Query 040338
Match_columns 385
No_of_seqs 341 out of 1874
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 11:50:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040338.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040338hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 5.8E-34 2E-38 272.1 25.3 377 2-383 92-584 (597)
2 2xpi_A Anaphase-promoting comp 100.0 2.5E-31 8.7E-36 253.8 30.0 344 33-382 68-549 (597)
3 4g26_A Pentatricopeptide repea 100.0 1E-31 3.5E-36 248.2 19.1 185 49-276 26-223 (501)
4 4g26_A Pentatricopeptide repea 100.0 1.2E-31 3.9E-36 247.9 18.5 174 33-224 41-224 (501)
5 1w3b_A UDP-N-acetylglucosamine 99.9 1.1E-24 3.8E-29 196.7 32.9 331 4-382 9-372 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 1.9E-22 6.4E-27 182.1 29.5 302 33-382 14-338 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 4.7E-21 1.6E-25 176.3 25.5 287 48-382 25-362 (450)
8 2gw1_A Mitochondrial precursor 99.9 7.3E-21 2.5E-25 177.8 25.9 344 33-382 21-482 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 7.6E-20 2.6E-24 168.2 29.5 302 33-381 41-413 (450)
10 3fp2_A TPR repeat-containing p 99.8 6.6E-19 2.3E-23 165.6 26.9 321 33-382 40-495 (537)
11 2gw1_A Mitochondrial precursor 99.8 6.2E-19 2.1E-23 164.7 25.7 307 52-382 9-448 (514)
12 3ieg_A DNAJ homolog subfamily 99.8 4.4E-18 1.5E-22 151.1 26.1 286 49-382 3-339 (359)
13 3spa_A Mtrpol, DNA-directed RN 99.8 3.2E-21 1.1E-25 184.0 5.1 149 50-224 128-286 (1134)
14 3spa_A Mtrpol, DNA-directed RN 99.8 2.5E-20 8.7E-25 177.9 8.1 142 87-246 127-286 (1134)
15 3hym_B Cell division cycle pro 99.8 1.1E-16 3.6E-21 140.6 27.1 271 48-365 21-321 (330)
16 3hym_B Cell division cycle pro 99.8 1.2E-17 4.1E-22 146.7 19.6 257 83-382 18-303 (330)
17 3ieg_A DNAJ homolog subfamily 99.8 1.6E-16 5.5E-21 141.0 26.5 285 33-361 18-352 (359)
18 1fch_A Peroxisomal targeting s 99.8 3.7E-17 1.3E-21 146.1 20.7 303 7-376 14-357 (368)
19 1b89_A Protein (clathrin heavy 99.8 2.1E-18 7.2E-23 153.0 9.7 269 33-372 18-305 (449)
20 3fp2_A TPR repeat-containing p 99.7 1.9E-16 6.3E-21 148.8 22.6 295 50-383 26-412 (537)
21 1fch_A Peroxisomal targeting s 99.7 2.7E-17 9.2E-22 146.9 14.0 268 65-382 38-318 (368)
22 4eqf_A PEX5-related protein; a 99.7 7.7E-17 2.6E-21 144.0 14.9 256 86-374 64-352 (365)
23 4eqf_A PEX5-related protein; a 99.7 7.1E-16 2.4E-20 137.7 20.5 251 48-344 64-354 (365)
24 1b89_A Protein (clathrin heavy 99.7 3.4E-16 1.2E-20 138.9 15.3 251 6-307 15-304 (449)
25 3cv0_A Peroxisome targeting si 99.7 2.1E-15 7.3E-20 132.0 20.4 259 50-378 22-315 (327)
26 3mkr_A Coatomer subunit epsilo 99.7 1.2E-15 4E-20 131.7 17.6 241 98-383 10-269 (291)
27 2xm6_A Protein corresponding t 99.7 3.1E-13 1.1E-17 125.6 31.8 318 33-381 58-435 (490)
28 3mkr_A Coatomer subunit epsilo 99.6 1.6E-14 5.3E-19 124.7 16.2 262 33-371 14-287 (291)
29 2ooe_A Cleavage stimulation fa 99.6 2.9E-12 1E-16 120.2 29.7 351 6-381 24-495 (530)
30 1xi4_A Clathrin heavy chain; a 99.6 1.6E-12 5.4E-17 128.7 28.3 313 33-373 1000-1340(1630)
31 4g1t_A Interferon-induced prot 99.6 2.4E-12 8.1E-17 118.9 28.4 315 49-384 51-465 (472)
32 3cv0_A Peroxisome targeting si 99.6 5.2E-13 1.8E-17 116.8 22.7 244 33-345 36-314 (327)
33 2xm6_A Protein corresponding t 99.6 4.1E-12 1.4E-16 118.0 29.3 314 37-380 26-398 (490)
34 1xi4_A Clathrin heavy chain; a 99.6 2.9E-12 9.8E-17 126.9 27.3 339 2-370 993-1376(1630)
35 3uq3_A Heat shock protein STI1 99.5 8.6E-14 2.9E-18 117.4 13.8 213 140-379 5-237 (258)
36 3u4t_A TPR repeat-containing p 99.5 6.4E-13 2.2E-17 113.2 18.6 232 87-383 3-255 (272)
37 2ooe_A Cleavage stimulation fa 99.5 9.8E-12 3.3E-16 116.7 27.3 327 48-382 12-458 (530)
38 1ouv_A Conserved hypothetical 99.5 2.2E-12 7.6E-17 110.1 19.4 217 138-382 4-255 (273)
39 3uq3_A Heat shock protein STI1 99.5 1.9E-12 6.5E-17 109.1 18.4 221 50-345 6-235 (258)
40 2h6f_A Protein farnesyltransfe 99.5 5E-12 1.7E-16 112.8 21.1 234 87-381 97-351 (382)
41 4a1s_A PINS, partner of inscut 99.5 5.2E-13 1.8E-17 120.9 14.2 256 88-379 49-373 (411)
42 2pl2_A Hypothetical conserved 99.5 2.1E-12 7E-17 106.3 16.1 191 47-286 3-208 (217)
43 1xnf_A Lipoprotein NLPI; TPR, 99.5 6.2E-13 2.1E-17 113.3 13.4 240 65-372 18-269 (275)
44 3ro2_A PINS homolog, G-protein 99.5 6E-13 2E-17 116.5 13.5 256 89-381 7-335 (338)
45 2ho1_A Type 4 fimbrial biogene 99.5 8.9E-12 3.1E-16 104.8 20.0 200 140-382 37-242 (252)
46 3sf4_A G-protein-signaling mod 99.4 9E-13 3.1E-17 118.9 14.0 131 248-378 163-336 (406)
47 4a1s_A PINS, partner of inscut 99.4 1.5E-12 5.2E-17 117.9 15.0 250 63-345 59-371 (411)
48 2pl2_A Hypothetical conserved 99.4 4.3E-12 1.5E-16 104.4 16.0 195 84-344 2-212 (217)
49 1xnf_A Lipoprotein NLPI; TPR, 99.4 2.3E-12 7.7E-17 109.8 14.5 148 33-205 20-174 (275)
50 3sf4_A G-protein-signaling mod 99.4 5.4E-12 1.8E-16 113.8 17.5 267 65-365 22-363 (406)
51 3e4b_A ALGK; tetratricopeptide 99.4 1E-11 3.5E-16 114.0 19.1 327 5-380 14-389 (452)
52 2q7f_A YRRB protein; TPR, prot 99.4 2.3E-12 7.7E-17 107.7 13.4 199 138-382 21-226 (243)
53 2ho1_A Type 4 fimbrial biogene 99.4 1.1E-11 3.9E-16 104.1 17.6 200 49-316 37-240 (252)
54 3ulq_A Response regulator aspa 99.4 1.2E-11 4.2E-16 111.0 18.8 293 53-379 13-369 (383)
55 3u4t_A TPR repeat-containing p 99.4 6E-11 2.1E-15 100.8 22.0 233 65-355 16-261 (272)
56 2vq2_A PILW, putative fimbrial 99.4 2.2E-11 7.7E-16 100.1 18.7 202 138-382 6-215 (225)
57 2q7f_A YRRB protein; TPR, prot 99.4 4E-12 1.4E-16 106.1 13.9 119 65-204 36-154 (243)
58 2h6f_A Protein farnesyltransfe 99.4 4.1E-11 1.4E-15 106.9 21.1 243 50-361 98-365 (382)
59 3ro2_A PINS homolog, G-protein 99.4 6E-12 2E-16 110.1 15.1 249 64-345 17-331 (338)
60 1ouv_A Conserved hypothetical 99.4 6.1E-11 2.1E-15 101.1 20.8 225 48-345 5-250 (273)
61 4g1t_A Interferon-induced prot 99.4 1.4E-10 4.8E-15 107.0 24.1 282 84-381 48-404 (472)
62 2vq2_A PILW, putative fimbrial 99.4 4.5E-11 1.5E-15 98.3 18.6 167 48-260 7-175 (225)
63 3vtx_A MAMA; tetratricopeptide 99.3 1.2E-11 3.9E-16 98.9 12.0 152 231-382 4-174 (184)
64 3nf1_A KLC 1, kinesin light ch 99.3 2.1E-11 7E-16 105.7 14.3 255 86-381 26-310 (311)
65 3ulq_A Response regulator aspa 99.3 8.2E-11 2.8E-15 105.6 18.3 219 93-344 109-366 (383)
66 3nf1_A KLC 1, kinesin light ch 99.3 3.6E-11 1.2E-15 104.1 15.1 257 49-344 27-305 (311)
67 3e4b_A ALGK; tetratricopeptide 99.3 2.8E-10 9.6E-15 104.4 21.3 287 65-381 16-354 (452)
68 2ond_A Cleavage stimulation fa 99.3 6.5E-10 2.2E-14 96.6 20.1 219 104-383 33-275 (308)
69 3vtx_A MAMA; tetratricopeptide 99.2 7.1E-10 2.4E-14 88.3 17.4 169 48-263 4-172 (184)
70 4abn_A Tetratricopeptide repea 99.2 2.2E-10 7.7E-15 105.7 15.9 212 66-344 82-319 (474)
71 4e6h_A MRNA 3'-END-processing 99.2 2.2E-08 7.4E-13 95.5 29.5 355 5-383 77-575 (679)
72 3q15_A PSP28, response regulat 99.2 6.8E-10 2.3E-14 99.4 18.3 290 54-378 14-365 (378)
73 2ond_A Cleavage stimulation fa 99.2 2.4E-09 8.1E-14 93.0 19.7 217 35-316 33-272 (308)
74 4abn_A Tetratricopeptide repea 99.2 4.7E-10 1.6E-14 103.5 15.6 207 33-285 83-314 (474)
75 3as5_A MAMA; tetratricopeptide 99.2 3.1E-10 1E-14 90.1 12.4 152 232-383 8-178 (186)
76 3q15_A PSP28, response regulat 99.1 3.8E-09 1.3E-13 94.5 19.4 219 93-344 107-363 (378)
77 3as5_A MAMA; tetratricopeptide 99.1 2.3E-09 8E-14 84.9 15.4 154 87-283 8-164 (186)
78 1hz4_A MALT regulatory protein 99.1 7.6E-08 2.6E-12 85.7 25.7 285 33-367 29-354 (373)
79 1hz4_A MALT regulatory protein 99.1 1.7E-08 6E-13 89.9 21.2 265 65-379 27-323 (373)
80 4gyw_A UDP-N-acetylglucosamine 99.1 5.6E-10 1.9E-14 107.5 11.9 151 230-380 7-176 (723)
81 3edt_B KLC 2, kinesin light ch 99.1 4E-09 1.4E-13 89.6 15.8 238 65-344 14-279 (283)
82 3edt_B KLC 2, kinesin light ch 99.1 3E-09 1E-13 90.4 14.6 152 35-204 25-198 (283)
83 4i17_A Hypothetical protein; T 99.0 5.4E-09 1.8E-13 86.3 14.3 153 231-383 6-214 (228)
84 4gyw_A UDP-N-acetylglucosamine 99.0 7.7E-09 2.6E-13 99.6 16.3 164 49-260 9-173 (723)
85 2fo7_A Synthetic consensus TPR 99.0 1.4E-08 4.9E-13 75.6 13.8 132 51-206 3-134 (136)
86 1qqe_A Vesicular transport pro 99.0 1.1E-08 3.7E-13 88.0 14.0 210 142-381 39-272 (292)
87 4i17_A Hypothetical protein; T 99.0 3.7E-08 1.3E-12 81.2 16.6 186 48-260 6-208 (228)
88 2fo7_A Synthetic consensus TPR 98.9 2.3E-08 7.9E-13 74.4 12.1 130 88-260 2-131 (136)
89 3qky_A Outer membrane assembly 98.8 3.6E-08 1.2E-12 83.1 12.3 153 231-383 14-229 (261)
90 2yhc_A BAMD, UPF0169 lipoprote 98.8 1.1E-07 3.9E-12 78.2 14.4 181 178-382 7-217 (225)
91 3mv2_B Coatomer subunit epsilo 98.8 5.3E-07 1.8E-11 76.7 18.5 199 138-383 69-287 (310)
92 1qqe_A Vesicular transport pro 98.8 5.5E-08 1.9E-12 83.6 12.7 143 240-382 45-232 (292)
93 2uy1_A Cleavage stimulation fa 98.8 1.5E-06 5.2E-11 80.2 22.5 341 6-377 6-412 (493)
94 4e6h_A MRNA 3'-END-processing 98.8 8.7E-06 3E-10 77.7 27.6 68 46-117 63-133 (679)
95 2pzi_A Probable serine/threoni 98.8 1.2E-07 4E-12 91.5 15.0 172 65-282 404-587 (681)
96 2ifu_A Gamma-SNAP; membrane fu 98.7 1.3E-07 4.6E-12 81.8 13.4 231 65-370 4-253 (307)
97 3qky_A Outer membrane assembly 98.7 1.7E-07 5.7E-12 79.1 12.8 195 85-316 13-226 (261)
98 3qou_A Protein YBBN; thioredox 98.7 7.3E-07 2.5E-11 76.3 16.9 176 36-258 104-281 (287)
99 3mv2_B Coatomer subunit epsilo 98.7 6.5E-07 2.2E-11 76.2 16.0 146 71-260 85-239 (310)
100 3rjv_A Putative SEL1 repeat pr 98.7 2.9E-07 9.9E-12 75.0 13.3 150 232-382 18-201 (212)
101 3urz_A Uncharacterized protein 98.7 1.3E-07 4.3E-12 76.9 10.3 147 236-382 8-190 (208)
102 2pzi_A Probable serine/threoni 98.7 4E-07 1.4E-11 87.8 14.9 171 151-345 402-604 (681)
103 3qou_A Protein YBBN; thioredox 98.6 4E-07 1.4E-11 78.0 13.2 160 83-286 113-278 (287)
104 2ifu_A Gamma-SNAP; membrane fu 98.6 4.2E-07 1.4E-11 78.7 13.4 142 239-382 43-227 (307)
105 2r5s_A Uncharacterized protein 98.6 3.7E-07 1.3E-11 71.9 11.7 154 89-286 8-167 (176)
106 3gyz_A Chaperone protein IPGC; 98.6 2E-07 6.8E-12 71.3 8.8 118 265-382 11-137 (151)
107 2r5s_A Uncharacterized protein 98.6 6.4E-07 2.2E-11 70.5 12.0 143 235-377 9-172 (176)
108 2vsy_A XCC0866; transferase, g 98.6 6.1E-07 2.1E-11 84.7 13.9 152 65-260 2-156 (568)
109 3urz_A Uncharacterized protein 98.6 9.2E-07 3.1E-11 71.7 13.1 160 64-269 16-196 (208)
110 4ga2_A E3 SUMO-protein ligase 98.6 3.7E-07 1.3E-11 69.8 10.0 137 65-224 10-148 (150)
111 1hh8_A P67PHOX, NCF-2, neutrop 98.6 1.1E-06 3.9E-11 71.2 13.0 121 65-208 19-154 (213)
112 2vsy_A XCC0866; transferase, g 98.5 1.3E-06 4.4E-11 82.5 14.2 150 34-207 5-160 (568)
113 1hh8_A P67PHOX, NCF-2, neutrop 98.5 2.9E-06 9.8E-11 68.8 14.4 125 234-380 8-152 (213)
114 3dra_A Protein farnesyltransfe 98.5 0.00012 4E-09 62.8 24.6 230 52-346 32-287 (306)
115 2yhc_A BAMD, UPF0169 lipoprote 98.5 5.3E-06 1.8E-10 68.1 15.9 157 65-260 17-212 (225)
116 4gco_A Protein STI-1; structur 98.5 9.6E-07 3.3E-11 65.3 9.2 97 287-383 15-115 (126)
117 3u3w_A Transcriptional activat 98.4 7E-06 2.4E-10 70.4 15.8 142 236-377 79-265 (293)
118 3gw4_A Uncharacterized protein 98.4 9.3E-07 3.2E-11 71.0 9.7 134 245-378 5-176 (203)
119 3gyz_A Chaperone protein IPGC; 98.4 2.5E-06 8.4E-11 65.2 11.3 85 65-169 49-133 (151)
120 4ga2_A E3 SUMO-protein ligase 98.4 2.8E-06 9.7E-11 64.9 11.7 133 33-190 12-149 (150)
121 3dra_A Protein farnesyltransfe 98.4 0.00024 8.2E-09 60.8 24.3 219 10-260 32-286 (306)
122 1na0_A Designed protein CTPR3; 98.4 3.5E-06 1.2E-10 61.3 10.9 113 87-220 9-121 (125)
123 1na0_A Designed protein CTPR3; 98.4 5.8E-06 2E-10 60.1 12.0 112 49-185 9-121 (125)
124 2lni_A Stress-induced-phosphop 98.4 6.5E-06 2.2E-10 60.8 11.8 100 86-205 15-114 (133)
125 3u3w_A Transcriptional activat 98.4 8.6E-06 3E-10 69.8 14.1 161 65-259 88-264 (293)
126 3gw4_A Uncharacterized protein 98.3 1.7E-06 5.9E-11 69.4 8.9 162 65-260 5-175 (203)
127 2qfc_A PLCR protein; TPR, HTH, 98.3 3.7E-06 1.3E-10 72.1 11.4 144 234-377 77-265 (293)
128 1a17_A Serine/threonine protei 98.3 9.4E-06 3.2E-10 62.6 12.5 130 50-203 14-145 (166)
129 2vyi_A SGTA protein; chaperone 98.3 5.6E-06 1.9E-10 60.8 10.3 97 88-204 13-109 (131)
130 2qfc_A PLCR protein; TPR, HTH, 98.3 4.4E-05 1.5E-09 65.3 17.1 173 52-259 78-264 (293)
131 2kck_A TPR repeat; tetratricop 98.3 3.2E-06 1.1E-10 60.3 8.4 96 288-383 9-111 (112)
132 2kck_A TPR repeat; tetratricop 98.3 6.5E-06 2.2E-10 58.6 10.0 101 86-206 5-108 (112)
133 2vyi_A SGTA protein; chaperone 98.3 1.4E-05 4.7E-10 58.6 12.0 119 49-191 12-130 (131)
134 1a17_A Serine/threonine protei 98.3 6.5E-06 2.2E-10 63.5 10.5 132 87-259 13-144 (166)
135 2lni_A Stress-induced-phosphop 98.3 1.9E-05 6.6E-10 58.1 12.6 116 138-277 14-132 (133)
136 4gco_A Protein STI-1; structur 98.3 1.8E-05 6.2E-10 58.3 12.0 84 65-168 26-109 (126)
137 1p5q_A FKBP52, FK506-binding p 98.3 2.2E-06 7.5E-11 75.1 8.1 147 33-203 128-293 (336)
138 2e2e_A Formate-dependent nitri 98.2 3E-06 1E-10 66.6 8.1 118 243-382 21-148 (177)
139 2vgx_A Chaperone SYCD; alterna 98.2 4E-06 1.4E-10 63.8 8.3 95 288-382 24-122 (148)
140 4gcn_A Protein STI-1; structur 98.2 2.7E-06 9.1E-11 62.9 7.0 96 287-382 10-116 (127)
141 2xcb_A PCRH, regulatory protei 98.2 4.3E-06 1.5E-10 63.1 8.1 95 289-383 22-120 (142)
142 2e2e_A Formate-dependent nitri 98.2 5E-06 1.7E-10 65.2 8.7 120 65-206 23-146 (177)
143 3rjv_A Putative SEL1 repeat pr 98.2 2E-05 6.9E-10 63.9 12.1 128 250-378 4-158 (212)
144 3sz7_A HSC70 cochaperone (SGT) 98.2 7.1E-06 2.4E-10 63.5 8.6 96 288-383 14-113 (164)
145 2xcb_A PCRH, regulatory protei 98.2 3E-05 1E-09 58.4 11.5 85 65-169 31-115 (142)
146 1hxi_A PEX5, peroxisome target 98.1 5E-06 1.7E-10 60.9 6.9 94 290-383 22-119 (121)
147 2vgx_A Chaperone SYCD; alterna 98.1 3.6E-05 1.2E-09 58.5 12.0 96 51-169 23-118 (148)
148 4b4t_Q 26S proteasome regulato 98.1 0.00016 5.5E-09 65.3 18.1 197 94-314 11-245 (434)
149 1elw_A TPR1-domain of HOP; HOP 98.1 1.2E-05 4.1E-10 57.7 8.6 95 288-382 7-105 (118)
150 4b4t_Q 26S proteasome regulato 98.1 3.3E-05 1.1E-09 69.9 13.3 179 148-344 12-243 (434)
151 3upv_A Heat shock protein STI1 98.1 8.8E-06 3E-10 59.8 7.8 92 288-379 7-102 (126)
152 3q7a_A Farnesyltransferase alp 98.1 0.0037 1.3E-07 54.3 24.4 218 10-259 53-329 (349)
153 3upv_A Heat shock protein STI1 98.1 2E-05 7E-10 57.8 9.0 64 139-204 37-101 (126)
154 3q7a_A Farnesyltransferase alp 98.1 0.003 1E-07 54.8 23.4 231 65-346 67-331 (349)
155 1elw_A TPR1-domain of HOP; HOP 98.1 0.00011 3.8E-09 52.5 12.6 97 50-169 5-101 (118)
156 2xev_A YBGF; tetratricopeptide 98.0 1.7E-05 5.9E-10 58.3 7.9 93 290-382 7-109 (129)
157 1elr_A TPR2A-domain of HOP; HO 98.0 1E-05 3.6E-10 59.3 6.6 94 288-381 7-111 (131)
158 4gcn_A Protein STI-1; structur 98.0 9.9E-06 3.4E-10 59.8 6.4 100 88-206 9-114 (127)
159 4f3v_A ESX-1 secretion system 98.0 2.6E-05 9E-10 65.5 9.6 129 65-216 115-247 (282)
160 3q49_B STIP1 homology and U bo 98.0 1.6E-05 5.5E-10 59.2 7.6 95 287-381 11-109 (137)
161 2fbn_A 70 kDa peptidylprolyl i 98.0 1.3E-05 4.4E-10 64.2 7.4 64 318-381 89-154 (198)
162 1p5q_A FKBP52, FK506-binding p 98.0 2.8E-05 9.6E-10 68.0 10.1 151 65-259 126-292 (336)
163 3ro3_A PINS homolog, G-protein 98.0 4.9E-05 1.7E-09 57.9 10.3 135 232-379 9-159 (164)
164 2c2l_A CHIP, carboxy terminus 98.0 5.3E-05 1.8E-09 64.4 11.4 98 49-169 4-101 (281)
165 3ro3_A PINS homolog, G-protein 98.0 2.3E-05 7.8E-10 59.8 8.4 92 287-378 11-118 (164)
166 3q49_B STIP1 homology and U bo 98.0 0.0001 3.5E-09 54.6 11.5 101 46-169 6-106 (137)
167 3sz7_A HSC70 cochaperone (SGT) 98.0 4.8E-05 1.7E-09 58.7 9.9 100 86-206 10-110 (164)
168 3k9i_A BH0479 protein; putativ 98.0 7.9E-06 2.7E-10 59.3 4.9 86 297-382 2-94 (117)
169 1elr_A TPR2A-domain of HOP; HO 98.0 5.3E-05 1.8E-09 55.4 9.5 112 50-183 5-120 (131)
170 2if4_A ATFKBP42; FKBP-like, al 97.9 2.4E-05 8.1E-10 68.5 7.7 144 233-383 180-333 (338)
171 4f3v_A ESX-1 secretion system 97.9 9.8E-05 3.3E-09 62.0 11.0 172 187-381 18-240 (282)
172 3rkv_A Putative peptidylprolyl 97.9 5E-05 1.7E-09 58.5 8.7 96 288-383 14-131 (162)
173 3k9i_A BH0479 protein; putativ 97.9 9.4E-06 3.2E-10 58.9 3.7 86 65-169 3-90 (117)
174 2dba_A Smooth muscle cell asso 97.9 0.00035 1.2E-08 52.3 12.7 98 48-169 27-128 (148)
175 2dba_A Smooth muscle cell asso 97.9 0.0002 6.9E-09 53.6 11.3 100 85-206 26-130 (148)
176 2fbn_A 70 kDa peptidylprolyl i 97.8 0.00014 4.9E-09 58.0 10.9 147 33-204 19-186 (198)
177 2c2l_A CHIP, carboxy terminus 97.8 0.00011 3.8E-09 62.4 10.1 95 288-382 7-105 (281)
178 1wao_1 Serine/threonine protei 97.8 8.5E-05 2.9E-09 68.3 9.5 114 64-199 18-134 (477)
179 1hxi_A PEX5, peroxisome target 97.8 0.00013 4.4E-09 53.1 8.5 95 52-169 20-114 (121)
180 3dss_A Geranylgeranyl transfer 97.7 0.0042 1.4E-07 53.6 18.2 255 49-345 26-303 (331)
181 3n71_A Histone lysine methyltr 97.7 8.8E-05 3E-09 68.0 7.6 123 240-377 317-463 (490)
182 2xev_A YBGF; tetratricopeptide 97.7 0.00025 8.5E-09 51.8 8.8 96 90-206 5-107 (129)
183 1kt0_A FKBP51, 51 kDa FK506-bi 97.7 7.1E-05 2.4E-09 68.4 6.9 146 33-202 249-413 (457)
184 3n71_A Histone lysine methyltr 97.6 6.2E-05 2.1E-09 69.0 6.3 81 297-377 321-421 (490)
185 2uy1_A Cleavage stimulation fa 97.6 0.0015 5.3E-08 60.1 14.9 281 66-375 28-380 (493)
186 1wao_1 Serine/threonine protei 97.6 0.0003 1E-08 64.6 9.7 117 4-164 16-134 (477)
187 1kt0_A FKBP51, 51 kDa FK506-bi 97.5 0.00041 1.4E-08 63.4 10.2 138 232-375 268-412 (457)
188 2hr2_A Hypothetical protein; a 97.5 0.00038 1.3E-08 52.8 8.2 97 288-384 14-137 (159)
189 1ihg_A Cyclophilin 40; ppiase 97.5 0.00046 1.6E-08 61.1 9.9 95 288-382 226-340 (370)
190 3rkv_A Putative peptidylprolyl 97.5 0.00094 3.2E-08 51.1 10.5 100 52-175 14-130 (162)
191 2l6j_A TPR repeat-containing p 97.5 0.00014 4.9E-09 51.5 5.2 94 86-200 3-103 (111)
192 3lvg_A Clathrin heavy chain 1; 97.4 2.5E-05 8.5E-10 69.4 0.6 233 125-369 41-324 (624)
193 1ihg_A Cyclophilin 40; ppiase 97.4 0.00099 3.4E-08 58.9 10.9 119 52-194 226-360 (370)
194 2kat_A Uncharacterized protein 97.4 0.00025 8.6E-09 50.8 5.2 78 303-380 3-84 (115)
195 2if4_A ATFKBP42; FKBP-like, al 97.3 0.00057 2E-08 59.7 7.7 97 287-383 181-298 (338)
196 2l6j_A TPR repeat-containing p 97.3 0.0001 3.5E-09 52.3 2.3 88 287-374 6-103 (111)
197 1klx_A Cysteine rich protein B 97.2 0.001 3.5E-08 49.6 7.2 91 292-382 32-130 (138)
198 2kat_A Uncharacterized protein 97.2 0.00098 3.3E-08 47.6 6.6 79 70-168 3-81 (115)
199 2hr2_A Hypothetical protein; a 97.2 0.0036 1.2E-07 47.5 9.7 89 65-168 24-130 (159)
200 3dss_A Geranylgeranyl transfer 97.0 0.055 1.9E-06 46.6 17.3 215 141-381 27-307 (331)
201 1dce_A Protein (RAB geranylger 97.0 0.011 3.8E-07 55.3 14.0 201 51-281 27-244 (567)
202 1zu2_A Mitochondrial import re 97.0 0.00066 2.3E-08 51.4 4.5 98 65-184 15-133 (158)
203 3ma5_A Tetratricopeptide repea 97.0 0.0013 4.6E-08 45.7 5.8 64 86-168 6-69 (100)
204 1klx_A Cysteine rich protein B 96.9 0.0066 2.3E-07 45.1 9.5 113 65-206 8-128 (138)
205 3qww_A SET and MYND domain-con 96.9 0.0015 5.2E-08 58.8 6.8 81 297-377 310-410 (433)
206 1na3_A Designed protein CTPR2; 96.9 0.0032 1.1E-07 42.4 7.0 29 140-168 43-71 (91)
207 1na3_A Designed protein CTPR2; 96.8 0.0056 1.9E-07 41.1 7.9 82 139-222 8-89 (91)
208 1zu2_A Mitochondrial import re 96.8 0.00081 2.8E-08 50.9 3.1 87 297-383 14-125 (158)
209 3ma5_A Tetratricopeptide repea 96.7 0.016 5.3E-07 40.1 9.6 57 288-344 10-68 (100)
210 2kc7_A BFR218_protein; tetratr 96.7 0.0012 4.2E-08 45.5 3.5 86 291-384 6-96 (99)
211 3qwp_A SET and MYND domain-con 96.7 0.004 1.4E-07 56.1 7.7 86 292-377 294-399 (429)
212 1dce_A Protein (RAB geranylger 96.7 0.027 9.4E-07 52.7 13.4 139 246-384 43-227 (567)
213 3qww_A SET and MYND domain-con 96.4 0.0046 1.6E-07 55.7 6.1 87 244-345 310-410 (433)
214 1wy6_A Hypothetical protein ST 96.4 0.17 5.9E-06 36.6 12.7 138 65-207 20-157 (172)
215 3mkq_A Coatomer beta'-subunit; 96.3 0.012 4.2E-07 57.6 9.3 166 144-368 633-802 (814)
216 3ly7_A Transcriptional activat 96.3 0.06 2.1E-06 46.8 12.0 145 45-208 190-343 (372)
217 3qwp_A SET and MYND domain-con 96.2 0.0078 2.7E-07 54.2 6.8 93 238-345 293-399 (429)
218 3mkq_A Coatomer beta'-subunit; 96.2 0.033 1.1E-06 54.6 11.5 71 123-204 666-736 (814)
219 1wy6_A Hypothetical protein ST 96.2 0.074 2.5E-06 38.5 9.9 134 244-382 19-158 (172)
220 2kc7_A BFR218_protein; tetratr 96.1 0.0065 2.2E-07 41.7 4.4 61 323-383 6-69 (99)
221 3mkq_B Coatomer subunit alpha; 95.9 0.33 1.1E-05 37.2 13.3 125 240-375 13-141 (177)
222 1pc2_A Mitochondria fission pr 95.4 0.008 2.7E-07 45.0 2.7 85 298-382 11-104 (152)
223 3bee_A Putative YFRE protein; 95.2 0.077 2.6E-06 36.1 7.0 66 85-169 4-72 (93)
224 3ly7_A Transcriptional activat 95.1 0.37 1.3E-05 41.9 12.6 128 33-182 214-350 (372)
225 3lvg_A Clathrin heavy chain 1; 95.1 0.018 6.3E-07 51.5 4.2 168 46-224 80-277 (624)
226 1pc2_A Mitochondria fission pr 95.0 0.043 1.5E-06 41.0 5.6 86 67-174 13-103 (152)
227 3u64_A Protein TP_0956; tetrat 94.9 0.15 5.2E-06 42.5 9.0 82 300-381 178-272 (301)
228 2v5f_A Prolyl 4-hydroxylase su 94.2 0.065 2.2E-06 37.3 4.7 55 290-344 10-73 (104)
229 2v5f_A Prolyl 4-hydroxylase su 94.2 0.2 6.7E-06 34.7 7.2 68 139-206 4-77 (104)
230 3bee_A Putative YFRE protein; 93.8 0.35 1.2E-05 32.7 7.7 48 301-348 25-75 (93)
231 3mkq_B Coatomer subunit alpha; 93.8 0.76 2.6E-05 35.2 10.2 104 95-259 13-116 (177)
232 1nzn_A CGI-135 protein, fissio 93.1 0.36 1.2E-05 34.6 7.0 84 299-382 15-107 (126)
233 2ff4_A Probable regulatory pro 92.8 1 3.4E-05 39.8 11.0 32 50-81 113-144 (388)
234 4b4t_P 26S proteasome regulato 92.8 0.71 2.4E-05 41.6 10.2 50 154-203 30-84 (445)
235 3u64_A Protein TP_0956; tetrat 92.6 0.77 2.6E-05 38.4 9.2 94 67-180 178-282 (301)
236 1nzn_A CGI-135 protein, fissio 91.3 1 3.4E-05 32.3 7.5 87 66-174 15-106 (126)
237 4fhn_B Nucleoporin NUP120; pro 89.9 8.1 0.00028 39.5 15.5 166 144-338 846-1041(1139)
238 4h7y_A Dual specificity protei 89.2 2 7E-05 31.8 7.6 58 153-211 73-130 (161)
239 1v54_E Cytochrome C oxidase po 87.2 2.4 8E-05 28.9 6.3 63 155-218 25-87 (109)
240 4h7y_A Dual specificity protei 87.1 7.5 0.00026 28.8 9.8 114 46-183 10-136 (161)
241 2ff4_A Probable regulatory pro 87.0 1.9 6.7E-05 38.0 7.8 70 143-213 174-248 (388)
242 3ffl_A Anaphase-promoting comp 86.5 5.4 0.00018 30.1 8.7 119 142-260 22-150 (167)
243 1v54_E Cytochrome C oxidase po 84.7 5.2 0.00018 27.2 7.0 62 103-183 26-87 (109)
244 2uwj_G Type III export protein 84.5 3.6 0.00012 27.8 6.1 87 65-180 19-107 (115)
245 1qsa_A Protein (soluble lytic 84.4 27 0.00093 32.8 24.9 106 272-377 239-347 (618)
246 4gns_B Protein CSD3, chitin bi 84.1 15 0.00051 35.4 12.7 130 144-286 252-394 (754)
247 4b4t_P 26S proteasome regulato 83.5 24 0.00083 31.6 19.7 180 138-345 54-246 (445)
248 3txn_A 26S proteasome regulato 83.1 23 0.00078 31.1 12.6 143 234-376 21-208 (394)
249 2p58_C Putative type III secre 82.8 3.8 0.00013 27.8 5.7 87 65-180 20-108 (116)
250 2y69_E Cytochrome C oxidase su 80.9 5.4 0.00018 28.8 6.2 59 158-217 71-129 (152)
251 4gns_B Protein CSD3, chitin bi 79.8 23 0.00078 34.2 12.2 50 295-344 347-398 (754)
252 3lpz_A GET4 (YOR164C homolog); 78.9 30 0.001 29.5 19.9 197 66-313 10-215 (336)
253 4fhn_B Nucleoporin NUP120; pro 78.6 62 0.0021 33.1 26.4 205 65-286 825-1043(1139)
254 2wpv_A GET4, UPF0363 protein Y 75.9 35 0.0012 28.8 20.0 196 67-312 12-215 (312)
255 3o48_A Mitochondria fission 1 75.3 8 0.00027 27.9 5.9 60 58-117 49-108 (134)
256 3o48_A Mitochondria fission 1 74.8 17 0.00059 26.1 7.6 68 83-168 36-106 (134)
257 1y8m_A FIS1; mitochondria, unk 71.7 11 0.00038 27.6 6.0 85 33-117 21-107 (144)
258 1zbp_A Hypothetical protein VP 71.5 9.7 0.00033 31.3 6.3 30 353-382 102-133 (273)
259 2y69_E Cytochrome C oxidase su 71.1 27 0.00092 25.3 8.2 46 137-183 85-130 (152)
260 1zbp_A Hypothetical protein VP 70.8 5.9 0.0002 32.6 4.9 70 96-184 6-77 (273)
261 3txn_A 26S proteasome regulato 68.2 24 0.00082 31.0 8.6 114 264-377 20-167 (394)
262 1y8m_A FIS1; mitochondria, unk 66.5 35 0.0012 24.9 9.0 71 84-174 36-109 (144)
263 2w57_A Ferric uptake regulatio 65.9 37 0.0013 24.9 8.2 61 163-224 5-66 (150)
264 2zu6_B Programmed cell death p 65.8 14 0.00047 31.2 6.4 58 287-344 168-229 (307)
265 3ygs_P Procaspase 9; apoptosis 65.4 22 0.00076 23.9 6.3 27 34-60 53-79 (97)
266 2fe3_A Peroxide operon regulat 64.9 37 0.0013 24.7 8.0 61 163-224 10-70 (145)
267 1mzb_A Ferric uptake regulatio 64.4 33 0.0011 24.6 7.6 59 165-224 8-67 (136)
268 2xig_A Ferric uptake regulatio 62.6 36 0.0012 25.0 7.5 62 162-224 14-75 (150)
269 2uwj_G Type III export protein 62.2 34 0.0012 23.2 7.6 77 300-379 21-98 (115)
270 1ug3_A EIF4GI, eukaryotic prot 61.8 41 0.0014 28.7 8.8 27 90-116 14-40 (339)
271 3lpz_A GET4 (YOR164C homolog); 61.6 76 0.0026 27.1 16.3 167 142-344 37-214 (336)
272 3eiq_C Programmed cell death p 61.4 44 0.0015 28.8 8.8 58 287-344 219-280 (358)
273 2p58_C Putative type III secre 61.3 36 0.0012 23.2 8.4 77 300-379 22-99 (116)
274 2fu4_A Ferric uptake regulatio 61.1 29 0.001 22.1 8.3 61 164-225 6-67 (83)
275 2p1h_A APAF-1, apoptotic prote 58.8 37 0.0012 22.5 7.4 47 15-61 26-79 (94)
276 4a1g_A Mitotic checkpoint seri 58.6 39 0.0013 25.0 6.9 62 192-274 82-143 (152)
277 2nsz_A Programmed cell death p 58.5 47 0.0016 23.7 7.7 67 90-175 10-78 (129)
278 3esl_A Checkpoint serine/threo 56.9 40 0.0014 26.3 7.0 58 100-174 92-149 (202)
279 3eyy_A Putative iron uptake re 55.5 35 0.0012 24.9 6.4 60 163-224 7-66 (145)
280 4b4t_R RPN7, 26S proteasome re 54.9 31 0.0011 30.7 7.1 53 234-286 133-191 (429)
281 2r9g_A AAA ATPase, central reg 54.9 73 0.0025 24.8 8.3 48 54-102 16-63 (204)
282 3qil_A Clathrin heavy chain 1; 53.2 3.7 0.00013 28.9 0.6 67 273-339 16-86 (125)
283 2ion_A PDCD4, programmed cell 52.8 42 0.0014 24.8 6.4 67 90-175 12-80 (152)
284 4ets_A Ferric uptake regulatio 52.7 57 0.002 24.3 7.3 67 157-224 14-83 (162)
285 3esl_A Checkpoint serine/threo 52.5 81 0.0028 24.6 8.2 68 143-211 83-151 (202)
286 4b4t_R RPN7, 26S proteasome re 49.0 1.4E+02 0.0048 26.4 12.8 129 67-211 109-244 (429)
287 3bu8_A Telomeric repeat-bindin 48.4 64 0.0022 25.4 6.8 46 301-346 88-143 (235)
288 2wvi_A Mitotic checkpoint seri 48.0 72 0.0025 23.9 7.0 61 192-273 77-137 (164)
289 4a1g_A Mitotic checkpoint seri 47.5 83 0.0028 23.2 8.0 44 302-345 82-129 (152)
290 1wdy_A 2-5A-dependent ribonucl 46.1 85 0.0029 25.1 8.2 66 304-370 198-271 (285)
291 3bge_A Predicted ATPase; struc 44.7 84 0.0029 24.4 6.9 48 54-101 9-56 (201)
292 2cos_A Serine/threonine protei 44.3 34 0.0012 20.0 3.5 38 11-48 7-52 (54)
293 1ug3_A EIF4GI, eukaryotic prot 43.1 22 0.00075 30.5 4.0 23 144-166 15-37 (339)
294 2wpv_A GET4, UPF0363 protein Y 42.5 1.5E+02 0.0052 24.9 16.8 166 142-343 35-214 (312)
295 4aez_C MAD3, mitotic spindle c 42.4 89 0.003 24.8 7.0 44 302-345 131-178 (223)
296 4aez_C MAD3, mitotic spindle c 42.2 72 0.0025 25.3 6.4 62 191-273 130-191 (223)
297 3mwm_A ZUR, putative metal upt 41.5 63 0.0021 23.3 5.8 45 180-224 18-62 (139)
298 3bqo_A Telomeric repeat-bindin 41.5 38 0.0013 26.2 4.5 22 323-344 123-144 (211)
299 3ctd_A Putative ATPase, AAA fa 40.6 1.2E+02 0.0042 23.7 7.3 50 53-102 36-85 (213)
300 4b4t_S RPN3, 26S proteasome re 40.3 2.2E+02 0.0074 26.0 11.3 48 215-262 213-261 (523)
301 1k1a_A B-cell lymphoma 3-encod 39.6 1.1E+02 0.0039 23.7 7.8 178 1-209 13-210 (241)
302 4ady_A RPN2, 26S proteasome re 39.2 3E+02 0.01 27.4 18.9 46 123-168 388-439 (963)
303 1oai_A Nuclear RNA export fact 39.1 22 0.00074 21.4 2.4 24 153-176 33-57 (59)
304 2xig_A Ferric uptake regulatio 38.8 1.1E+02 0.0037 22.4 6.8 54 49-105 26-79 (150)
305 2fe3_A Peroxide operon regulat 38.6 80 0.0027 22.9 6.0 53 140-192 21-73 (145)
306 4ets_A Ferric uptake regulatio 38.0 1E+02 0.0034 23.0 6.5 67 36-105 19-87 (162)
307 3bqo_A Telomeric repeat-bindin 37.6 1.1E+02 0.0036 23.8 6.4 17 62-78 127-143 (211)
308 2nsz_A Programmed cell death p 37.5 70 0.0024 22.7 5.4 66 142-211 9-79 (129)
309 3ffl_A Anaphase-promoting comp 37.2 1.3E+02 0.0045 22.6 11.4 49 65-113 33-89 (167)
310 2o03_A Probable zinc uptake re 36.3 70 0.0024 22.7 5.3 47 145-191 15-61 (131)
311 2f6m_A Suppressor protein STP2 35.5 69 0.0024 19.7 4.2 52 51-106 4-55 (65)
312 2qx5_A Nucleoporin NIC96; mRNA 34.8 3E+02 0.01 26.1 15.9 84 292-375 450-564 (661)
313 2o03_A Probable zinc uptake re 34.2 70 0.0024 22.7 5.0 45 180-224 15-59 (131)
314 3kae_A CDC27, possible protein 34.0 61 0.0021 24.6 4.5 26 233-258 115-140 (242)
315 3rjo_A Endoplasmic reticulum a 33.8 2.4E+02 0.0083 24.7 11.6 29 142-170 269-297 (419)
316 4fke_A Aminopeptidase N; zinc 33.6 2E+02 0.0068 28.5 9.6 92 54-168 691-786 (909)
317 3mwm_A ZUR, putative metal upt 33.0 62 0.0021 23.3 4.6 49 144-192 17-65 (139)
318 3ygs_P Procaspase 9; apoptosis 32.7 45 0.0015 22.3 3.5 24 137-160 65-88 (97)
319 3pvs_A Replication-associated 32.2 2.7E+02 0.0093 24.7 12.2 137 68-206 167-326 (447)
320 2p1h_A APAF-1, apoptotic prote 32.1 38 0.0013 22.4 3.0 61 71-157 24-84 (94)
321 2ion_A PDCD4, programmed cell 31.8 61 0.0021 23.9 4.4 67 142-212 11-82 (152)
322 2d2s_A Exocyst complex compone 31.5 1.6E+02 0.0054 23.6 7.1 41 336-376 78-118 (235)
323 3qye_A TBC1 domain family memb 31.2 2.4E+02 0.0081 23.7 8.8 47 161-207 209-255 (331)
324 3eyy_A Putative iron uptake re 30.6 1E+02 0.0034 22.4 5.4 50 142-192 20-69 (145)
325 2ko4_A Mediator of RNA polymer 30.6 1E+02 0.0035 19.7 4.4 38 39-79 24-63 (81)
326 4gq2_M Nucleoporin NUP120; bet 30.1 2.3E+02 0.0078 28.3 9.4 65 139-204 839-926 (950)
327 1s6c_A KV4 potassium channel-i 29.4 1.7E+02 0.0058 21.5 10.6 42 334-375 140-182 (183)
328 3eu9_A Huntingtin-interacting 29.3 1.6E+02 0.0054 22.6 7.0 45 65-113 19-65 (240)
329 2qfz_A TBC1 domain family memb 28.7 1.6E+02 0.0054 25.1 7.2 83 161-261 230-315 (345)
330 2b7e_A PRE-mRNA processing pro 28.5 62 0.0021 19.4 3.1 33 68-100 2-35 (59)
331 2d2s_A Exocyst complex compone 28.1 2.3E+02 0.0078 22.6 8.2 98 10-113 8-117 (235)
332 2r9g_A AAA ATPase, central reg 27.9 2.1E+02 0.0073 22.2 9.1 64 143-207 14-85 (204)
333 3pvs_A Replication-associated 27.2 3.3E+02 0.011 24.2 10.1 96 7-102 205-305 (447)
334 1mzb_A Ferric uptake regulatio 26.8 1.6E+02 0.0054 20.9 5.9 52 141-192 18-70 (136)
335 3eiq_C Programmed cell death p 26.8 2.1E+02 0.0072 24.6 7.4 24 91-114 221-244 (358)
336 4gq2_M Nucleoporin NUP120; bet 26.3 4.9E+02 0.017 25.9 11.3 123 238-363 816-950 (950)
337 3kat_A Nacht, LRR and PYD doma 25.5 1.5E+02 0.0051 20.3 5.0 40 33-76 62-101 (107)
338 2zu6_B Programmed cell death p 25.0 2E+02 0.0069 24.1 6.9 64 91-173 170-235 (307)
339 3gvo_A Pumilio 2, pumilio homo 24.7 3.2E+02 0.011 23.2 10.2 85 292-377 185-278 (351)
340 3d5l_A Regulatory protein RECX 24.1 2.6E+02 0.009 21.9 7.5 51 157-208 93-143 (221)
341 3bge_A Predicted ATPase; struc 24.0 2.5E+02 0.0087 21.7 7.5 62 145-206 9-78 (201)
342 3ctd_A Putative ATPase, AAA fa 23.5 2.7E+02 0.0091 21.8 8.4 66 142-207 34-107 (213)
343 2w57_A Ferric uptake regulatio 23.5 1.3E+02 0.0044 21.9 4.9 51 142-192 18-69 (150)
344 1wgl_A TOLL-interacting protei 23.4 1.3E+02 0.0043 18.0 4.2 22 362-383 36-57 (59)
345 2yru_A Steroid receptor RNA ac 23.3 62 0.0021 22.7 2.8 43 162-204 48-90 (118)
346 2bn5_A PSI; nuclear protein, s 23.3 86 0.0029 16.1 2.8 24 92-115 7-30 (33)
347 3t8k_A Uncharacterized protein 23.0 2.1E+02 0.007 21.5 6.3 66 145-210 40-109 (186)
348 2jul_A Calsenilin; EF-hand, ca 22.7 2.9E+02 0.0099 21.9 12.2 43 333-375 212-255 (256)
349 2ijq_A Hypothetical protein; s 22.5 2.4E+02 0.0083 21.0 6.6 49 329-377 44-103 (161)
350 2wvi_A Mitotic checkpoint seri 22.3 2.5E+02 0.0084 21.0 9.8 43 303-345 78-124 (164)
351 3kae_A CDC27, possible protein 20.9 2.8E+02 0.0096 21.1 11.3 117 57-205 7-144 (242)
352 2keb_A DNA polymerase subunit 20.2 2.1E+02 0.007 19.3 5.9 55 158-214 27-86 (101)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.8e-34 Score=272.09 Aligned_cols=377 Identities=9% Similarity=-0.042 Sum_probs=328.0
Q ss_pred cccccCCChHHHHHHHHHHHHcccchhhHHh---------hhhhHHHHHhhh--CCCChhhHHHHHHHHHhhhccCChHH
Q 040338 2 KACGSLKSLPIARKIHAQLISTCLISSIFLQ---------LIDDDYRVFCDI--GPRYLFTYNTMINGGVRCLCVGNIKM 70 (385)
Q Consensus 2 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---------~~~~A~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~~~~ 70 (385)
+.|.+.|+++.|..+++++......+..+.. ++++|..+|+++ ..+++.+|+.++.++.+ .|++++
T Consensus 92 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~ 168 (597)
T 2xpi_A 92 HDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVK---LYDWQG 168 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHH---TTCHHH
T ss_pred HHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHH---HhhHHH
Confidence 3567889999999999999965543322222 899999999998 47889999999999888 899999
Q ss_pred HHHHHHHHHHh---------------ccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCcc----------------
Q 040338 71 ALHLHGLVKKF---------------YFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLF---------------- 119 (385)
Q Consensus 71 a~~~~~~m~~~---------------g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~---------------- 119 (385)
|.++|+++... |.+++..+|+.++.+|.+.|++++|.++|++|.+.++.
T Consensus 169 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 248 (597)
T 2xpi_A 169 ALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTA 248 (597)
T ss_dssp HHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCH
T ss_pred HHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccc
Confidence 99999953221 22345789999999999999999999999999654321
Q ss_pred ----------------------------------ccccchHHHHHHhcCCCC--CCcchHHHHHHHHHhCCCchHHHHHH
Q 040338 120 ----------------------------------CWKFGIIRLLIMFQKMPE--RDLVSWNTMISILTRHGFGFETLCTF 163 (385)
Q Consensus 120 ----------------------------------~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~ 163 (385)
...|++++|.++|+++.. ++..+|+.++.+|.+.|++++|..+|
T Consensus 249 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 328 (597)
T 2xpi_A 249 DEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAIT 328 (597)
T ss_dssp HHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 112889999999999976 88999999999999999999999999
Q ss_pred HHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCC------------CCch
Q 040338 164 IELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNG------------IESS 231 (385)
Q Consensus 164 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~------------~~~~ 231 (385)
+++.+.+ +.+..++..++.++.+.|++++|.++++.+.+.. +.+..+++.+...|.+.|+.+ .+.+
T Consensus 329 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 406 (597)
T 2xpi_A 329 TKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQF 406 (597)
T ss_dssp HHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Confidence 9999864 3378889999999999999999999999999764 467889999999999999887 4456
Q ss_pred hhHHHHHHHHHHcCCChhHHHHHHHhccc---CChhhHHHHHHHHHhcCCCCchHHHH------------HHHHHHHHhc
Q 040338 232 IQIGKALVTMYAEGGSTQKADLAFELMSR---RNMISWMVLISAFSQAGVLEKPRFFF------------FFVSLLSGCS 296 (385)
Q Consensus 232 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~------------~~~~l~~~~~ 296 (385)
..+|+.++.+|.+.|++++|+++|+++.+ ++..+|+.++.+|.+.|++++|++.| +|+.++..|.
T Consensus 407 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 486 (597)
T 2xpi_A 407 GPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAF 486 (597)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 78999999999999999999999999875 37789999999999999999999999 8999999999
Q ss_pred ccCChhhHHHHHHHHHhcc------c---hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-C-CcchHHHHHHHHHhcCCh
Q 040338 297 HSGPVTKGKHYFTAMAKFT------Y---TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-P-TCVIWGALLGACCSHYNT 365 (385)
Q Consensus 297 ~~~~~~~a~~~~~~~~~~~------~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p-~~~~~~~li~~~~~~g~~ 365 (385)
+.|++++|.++|+++.+.. + ..++..++.+|.+.|++++|.++|+++.+. | +..+|..+..+|.+.|++
T Consensus 487 ~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 566 (597)
T 2xpi_A 487 NKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIP 566 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCH
T ss_pred HhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCH
Confidence 9999999999999998762 2 468899999999999999999999998763 4 788999999999999999
Q ss_pred HHHHHHHHHHHhccccCC
Q 040338 366 KLAELVMRNLLQLDVKVF 383 (385)
Q Consensus 366 ~~a~~~~~~~~~~~~~~~ 383 (385)
++|.+.++++.+.+|.++
T Consensus 567 ~~A~~~~~~~l~~~p~~~ 584 (597)
T 2xpi_A 567 GLAITHLHESLAISPNEI 584 (597)
T ss_dssp HHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHhcCCCCh
Confidence 999999999999988754
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.5e-31 Score=253.80 Aligned_cols=344 Identities=10% Similarity=-0.043 Sum_probs=267.9
Q ss_pred hhhhHHHHHhhhCCCChhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHh
Q 040338 33 LIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLR 112 (385)
Q Consensus 33 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 112 (385)
.+..+...|+.++.+++..|+.++..+.+ .|++++|..+|++|.+. .|+..++..++.+|.+.|++++|..+|++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 142 (597)
T 2xpi_A 68 SFLKERNAQNTDSLSREDYLRLWRHDALM---QQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTK 142 (597)
T ss_dssp --------------CHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccCCCCCccccchHHHHHHHHHHHHHHHH---ccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 45666777887777888889999999777 89999999999998854 56778888899999999999999999998
Q ss_pred cc--CCCccccc---------cchHHHHHHhcCCCCC-------------------CcchHHHHHHHHHhCCCchHHHHH
Q 040338 113 ML--NPSLFCWK---------FGIIRLLIMFQKMPER-------------------DLVSWNTMISILTRHGFGFETLCT 162 (385)
Q Consensus 113 m~--~~~~~~~~---------~~~~~a~~~~~~~~~~-------------------~~~~~~~li~~~~~~~~~~~a~~~ 162 (385)
+. ..+..++. |++++|.++|+++.+. +..+|+.++.+|.+.|++++|.++
T Consensus 143 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 222 (597)
T 2xpi_A 143 EDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKEC 222 (597)
T ss_dssp TCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 83 33443333 8899999999865433 377899999999999999999999
Q ss_pred HHHHHHCCC----------------------------------------------------------------------C
Q 040338 163 FIELWNHGF----------------------------------------------------------------------G 172 (385)
Q Consensus 163 ~~~m~~~g~----------------------------------------------------------------------~ 172 (385)
|++|.+.+. +
T Consensus 223 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 302 (597)
T 2xpi_A 223 YKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLE 302 (597)
T ss_dssp HHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGG
T ss_pred HHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCC
Confidence 998876432 1
Q ss_pred CCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCC------------CCchhhHHHHHHH
Q 040338 173 LSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNG------------IESSIQIGKALVT 240 (385)
Q Consensus 173 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~------------~~~~~~~~~~li~ 240 (385)
++..++..++.++.+.|++++|.++|+++.+.++ .+..+++.++.+|.+.|+.+ .+.+..++..++.
T Consensus 303 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 381 (597)
T 2xpi_A 303 KSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGI 381 (597)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHH
Confidence 4555566666666666666666666666666553 25556666666666666554 4456788999999
Q ss_pred HHHcCCChhHHHHHHHhccc---CChhhHHHHHHHHHhcCCCCchHHHH------------HHHHHHHHhcccCChhhHH
Q 040338 241 MYAEGGSTQKADLAFELMSR---RNMISWMVLISAFSQAGVLEKPRFFF------------FFVSLLSGCSHSGPVTKGK 305 (385)
Q Consensus 241 ~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~------------~~~~l~~~~~~~~~~~~a~ 305 (385)
.|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++| +|..++.+|.+.|++++|.
T Consensus 382 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 461 (597)
T 2xpi_A 382 YYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLAN 461 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999998865 36779999999999999999999988 8899999999999999999
Q ss_pred HHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCC-------CCC--cchHHHHHHHHHhcCChHHHHHHHHH
Q 040338 306 HYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPS-------KPT--CVIWGALLGACCSHYNTKLAELVMRN 374 (385)
Q Consensus 306 ~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~p~--~~~~~~li~~~~~~g~~~~a~~~~~~ 374 (385)
++|+++.+..+ ..++..++..|.+.|++++|.++|+++.+ .|+ ..+|..++.+|.+.|++++|.+.+++
T Consensus 462 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 541 (597)
T 2xpi_A 462 EYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQ 541 (597)
T ss_dssp HHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 99999988776 78899999999999999999999998844 466 67899999999999999999999999
Q ss_pred HHhccccC
Q 040338 375 LLQLDVKV 382 (385)
Q Consensus 375 ~~~~~~~~ 382 (385)
+.+.+|..
T Consensus 542 ~~~~~p~~ 549 (597)
T 2xpi_A 542 GLLLSTND 549 (597)
T ss_dssp HHHHSSCC
T ss_pred HHHhCCCC
Confidence 99887654
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.98 E-value=1e-31 Score=248.23 Aligned_cols=185 Identities=9% Similarity=0.007 Sum_probs=169.6
Q ss_pred hhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCC---------hhHHHHHHHhccCCCcc
Q 040338 49 LFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGA---------VDYAESAFLRMLNPSLF 119 (385)
Q Consensus 49 ~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---------~~~a~~~~~~m~~~~~~ 119 (385)
...++.+|.+|++ .|++++|+++|++|.+.|+.||..+||+||.+|++.+. +++|.++|++|.+.|+
T Consensus 26 e~~l~~~id~c~k---~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~- 101 (501)
T 4g26_A 26 EALLKQKLDMCSK---KGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKV- 101 (501)
T ss_dssp HHHHHHHHHHTTT---SCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHh---CCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCC-
Confidence 3457889999666 99999999999999999999999999999999998765 6789999999999998
Q ss_pred ccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHH
Q 040338 120 CWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHS 199 (385)
Q Consensus 120 ~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 199 (385)
.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|+
T Consensus 102 -----------------~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~ 164 (501)
T 4g26_A 102 -----------------VPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDA 164 (501)
T ss_dssp -----------------CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -----------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc----CChhhHHHHHHHHHh
Q 040338 200 RVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR----RNMISWMVLISAFSQ 275 (385)
Q Consensus 200 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~ 275 (385)
+|.+.|+.||..+| ++||.+|++.|++++|.++|++|.+ |+..||+.++..|+.
T Consensus 165 ~M~~~G~~Pd~~ty----------------------~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 165 HMVESEVVPEEPEL----------------------AALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHTTCCCCHHHH----------------------HHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHhcCCCCCHHHH----------------------HHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 99999998887777 5555556666699999999999985 899999999999986
Q ss_pred c
Q 040338 276 A 276 (385)
Q Consensus 276 ~ 276 (385)
.
T Consensus 223 ~ 223 (501)
T 4g26_A 223 E 223 (501)
T ss_dssp H
T ss_pred C
Confidence 4
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.98 E-value=1.2e-31 Score=247.91 Aligned_cols=174 Identities=8% Similarity=-0.013 Sum_probs=161.4
Q ss_pred hhhhHHHHHhhhC----CCChhhHHHHHHHHHhhhc------cCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCC
Q 040338 33 LIDDDYRVFCDIG----PRYLFTYNTMINGGVRCLC------VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGA 102 (385)
Q Consensus 33 ~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~------~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 102 (385)
++++|.++|++|. +||..|||+||.+|+.+.. .+.+++|.++|++|.+.|+.||..+|++||.+|++.|+
T Consensus 41 ~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~ 120 (501)
T 4g26_A 41 DVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDD 120 (501)
T ss_dssp CHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCC
Confidence 6777777777775 7999999999999775321 34478999999999999999999999999999999999
Q ss_pred hhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHH
Q 040338 103 VDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAF 182 (385)
Q Consensus 103 ~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll 182 (385)
+++|.++|++|.+.|+ .||..+||+||.+|++.|++++|.++|++|.+.|+.||..||++||
T Consensus 121 ~~~A~~l~~~M~~~g~------------------~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li 182 (501)
T 4g26_A 121 PEMAFDMVKQMKAFGI------------------QPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALL 182 (501)
T ss_dssp HHHHHHHHHHHHHTTC------------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC------------------CCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 9999999999999998 8999999999999999999999999999999999999999999999
Q ss_pred HHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcC
Q 040338 183 SARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG 224 (385)
Q Consensus 183 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 224 (385)
.+|++.|++++|.+++++|.+.|..|+..||+.++..|+..+
T Consensus 183 ~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 183 KVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred HHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999988743
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=1.1e-24 Score=196.75 Aligned_cols=331 Identities=11% Similarity=0.055 Sum_probs=266.8
Q ss_pred cccCCChHHHHHHHHHHHHcccchhhHHh----------hhhhHHHHHhhhC---CCChhhHHHHHHHHHhhhccCChHH
Q 040338 4 CGSLKSLPIARKIHAQLISTCLISSIFLQ----------LIDDDYRVFCDIG---PRYLFTYNTMINGGVRCLCVGNIKM 70 (385)
Q Consensus 4 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----------~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~~~~ 70 (385)
+-+.|+++.|...+.++.+.......... ++++|...++... +.+..+|..+...+.. .|++++
T Consensus 9 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~---~g~~~~ 85 (388)
T 1w3b_A 9 EYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKE---RGQLQE 85 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---HTCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH---CCCHHH
Confidence 34578999999999888876533322221 7788888887554 4456778888888777 789999
Q ss_pred HHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHH
Q 040338 71 ALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISIL 150 (385)
Q Consensus 71 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~ 150 (385)
|...|+++.+.. +.+..+|..+..++.+.|++++|.+.|+++.+.+ +.+...+..+...+
T Consensus 86 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------------p~~~~~~~~l~~~~ 145 (388)
T 1w3b_A 86 AIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-------------------PDLYCVRSDLGNLL 145 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-------------------TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------------CCcHHHHHHHHHHH
Confidence 999998888763 3345678888888888999999998888876544 23455677778888
Q ss_pred HhCCCchHHHHHHHHHHHCCCCC-CHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCC
Q 040338 151 TRHGFGFETLCTFIELWNHGFGL-SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229 (385)
Q Consensus 151 ~~~~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~ 229 (385)
...|++++|.+.|+++.+. .| +..+|..+...+.+.|++++|...++++.+.++
T Consensus 146 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p----------------------- 200 (388)
T 1w3b_A 146 KALGRLEEAKACYLKAIET--QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP----------------------- 200 (388)
T ss_dssp HTTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-----------------------
T ss_pred HHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----------------------
Confidence 8889999999999888875 34 567888888888889999999999988887653
Q ss_pred chhhHHHHHHHHHHcCCChhHHHHHHHhccc--C-ChhhHHHHHHHHHhcCCCCchHHHH------------HHHHHHHH
Q 040338 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSR--R-NMISWMVLISAFSQAGVLEKPRFFF------------FFVSLLSG 294 (385)
Q Consensus 230 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~------------~~~~l~~~ 294 (385)
.+...+..+...+...|++++|+..|++..+ | +..++..+..+|.+.|++++|++.+ +|..+...
T Consensus 201 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 280 (388)
T 1w3b_A 201 NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANA 280 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 1234556777778888899999998887764 3 5678888888999999999998888 78889999
Q ss_pred hcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-C-CcchHHHHHHHHHhcCChHHHHH
Q 040338 295 CSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-P-TCVIWGALLGACCSHYNTKLAEL 370 (385)
Q Consensus 295 ~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p-~~~~~~~li~~~~~~g~~~~a~~ 370 (385)
+.+.|++++|...++++.+..+ ...+..+...+.+.|++++|.+.++++.+. | +..+|..+...|.+.|++++|..
T Consensus 281 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 360 (388)
T 1w3b_A 281 LKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 360 (388)
T ss_dssp HHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999999998877 788899999999999999999999999874 4 46689999999999999999999
Q ss_pred HHHHHHhccccC
Q 040338 371 VMRNLLQLDVKV 382 (385)
Q Consensus 371 ~~~~~~~~~~~~ 382 (385)
.++++.+..|..
T Consensus 361 ~~~~a~~~~p~~ 372 (388)
T 1w3b_A 361 HYKEAIRISPTF 372 (388)
T ss_dssp HHHHHHTTCTTC
T ss_pred HHHHHHhhCCCC
Confidence 999999887754
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.92 E-value=1.9e-22 Score=182.13 Aligned_cols=302 Identities=10% Similarity=0.007 Sum_probs=257.1
Q ss_pred hhhhHHHHHhhhC--CCCh-hhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHH
Q 040338 33 LIDDDYRVFCDIG--PRYL-FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109 (385)
Q Consensus 33 ~~~~A~~~~~~~~--~~~~-~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 109 (385)
++++|...|+.+. .|+. ..+..+...+.. .|++++|...++...+.. +.+..+|..+..+|.+.|++++|.+.
T Consensus 14 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~---~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 89 (388)
T 1w3b_A 14 DFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQ---CRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEH 89 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 7899999998765 4544 344444444444 899999999999988764 55788999999999999999999999
Q ss_pred HHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-HhhHHHHHHHhcCc
Q 040338 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLS-SMLYATAFSARASV 188 (385)
Q Consensus 110 ~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~ 188 (385)
|+++.+.+ +.+..+|..+..++.+.|++++|.+.|+++.+. .|+ ...+..+...+...
T Consensus 90 ~~~al~~~-------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~ 148 (388)
T 1w3b_A 90 YRHALRLK-------------------PDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKAL 148 (388)
T ss_dssp HHHHHHHC-------------------TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTT
T ss_pred HHHHHHcC-------------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHc
Confidence 99886544 345668999999999999999999999999875 464 44566788888999
Q ss_pred cCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc--C-Chhh
Q 040338 189 YDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR--R-NMIS 265 (385)
Q Consensus 189 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~ 265 (385)
|++++|.+.++.+.+..+ .+..+|..+...+.+.|++++|+..|+++.+ | +...
T Consensus 149 g~~~~A~~~~~~al~~~p-----------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 205 (388)
T 1w3b_A 149 GRLEEAKACYLKAIETQP-----------------------NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDA 205 (388)
T ss_dssp SCHHHHHHHHHHHHHHCT-----------------------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred cCHHHHHHHHHHHHHhCC-----------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Confidence 999999999999988743 2344567788888899999999999999976 3 5678
Q ss_pred HHHHHHHHHhcCCCCchHHHH------------HHHHHHHHhcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccC
Q 040338 266 WMVLISAFSQAGVLEKPRFFF------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSG 331 (385)
Q Consensus 266 ~~~li~~~~~~g~~~~a~~~~------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g 331 (385)
|..+...+...|++++|+..+ ++..+...+...|++++|...++++.+..+ +..+..+...+.+.|
T Consensus 206 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 285 (388)
T 1w3b_A 206 YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKG 285 (388)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Confidence 889999999999999999988 888999999999999999999999999877 788999999999999
Q ss_pred CHHHHHHHHHhCCCC--CCcchHHHHHHHHHhcCChHHHHHHHHHHHhccccC
Q 040338 332 LLGEAKKLIDEMPSK--PTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKV 382 (385)
Q Consensus 332 ~~~~A~~~~~~m~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 382 (385)
++++|.+.|+++.+. ++..+|..+...+...|++++|...++++.+..|..
T Consensus 286 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 338 (388)
T 1w3b_A 286 SVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF 338 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTC
T ss_pred CHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 999999999998763 467789999999999999999999999999887653
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.89 E-value=4.7e-21 Score=176.25 Aligned_cols=287 Identities=10% Similarity=-0.031 Sum_probs=236.9
Q ss_pred ChhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHH
Q 040338 48 YLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIR 127 (385)
Q Consensus 48 ~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 127 (385)
+...|..+...+.. .|++++|..+|+.+.+.. +.+..++..+..+|...|++++|...|+++.+.+
T Consensus 25 ~~~~~~~~~~~~~~---~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---------- 90 (450)
T 2y4t_A 25 DVEKHLELGKKLLA---AGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK---------- 90 (450)
T ss_dssp HHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----------
Confidence 45677888888777 899999999999999864 4578899999999999999999999999987655
Q ss_pred HHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCH----hhHHHH------------HHHhcCccCc
Q 040338 128 LLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSS----MLYATA------------FSARASVYDL 191 (385)
Q Consensus 128 a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~t~~~l------------l~~~~~~~~~ 191 (385)
+.+..++..+..+|.+.|++++|...|+++.+. .|+. ..+..+ ...+.+.|++
T Consensus 91 ---------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 159 (450)
T 2y4t_A 91 ---------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDY 159 (450)
T ss_dssp ---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred ---------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 356788999999999999999999999999875 4543 444444 3448889999
Q ss_pred cchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc---CChhhHHH
Q 040338 192 EWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR---RNMISWMV 268 (385)
Q Consensus 192 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~ 268 (385)
++|...++.+.+..+ . +..++..+...|.+.|++++|+..|+++.+ .+..++..
T Consensus 160 ~~A~~~~~~~~~~~~-~----------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 216 (450)
T 2y4t_A 160 TAAIAFLDKILEVCV-W----------------------DAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYK 216 (450)
T ss_dssp HHHHHHHHHHHHHCT-T----------------------CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHH
T ss_pred HHHHHHHHHHHHhCC-C----------------------ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 999999999988753 2 334456667777777788888888887764 35677888
Q ss_pred HHHHHHhcCCCCchHHHH------------HHHH------------HHHHhcccCChhhHHHHHHHHHhccc------hh
Q 040338 269 LISAFSQAGVLEKPRFFF------------FFVS------------LLSGCSHSGPVTKGKHYFTAMAKFTY------TC 318 (385)
Q Consensus 269 li~~~~~~g~~~~a~~~~------------~~~~------------l~~~~~~~~~~~~a~~~~~~~~~~~~------~~ 318 (385)
+...|...|++++|+..+ .+.. +...|.+.|++++|...++.+.+..+ ..
T Consensus 217 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 296 (450)
T 2y4t_A 217 ISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVR 296 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHH
Confidence 888888888888888877 3333 37889999999999999999988766 23
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHhCCC-CC-CcchHHHHHHHHHhcCChHHHHHHHHHHHhccccC
Q 040338 319 YFVCMVDLLGLSGLLGEAKKLIDEMPS-KP-TCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKV 382 (385)
Q Consensus 319 ~~~~li~~~~~~g~~~~A~~~~~~m~~-~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 382 (385)
.+..+...+.+.|++++|...++++.. .| +...|..+..+|...|++++|...++++.+..|..
T Consensus 297 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 362 (450)
T 2y4t_A 297 SKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEND 362 (450)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcch
Confidence 678889999999999999999999865 34 67889999999999999999999999999988765
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.88 E-value=7.3e-21 Score=177.85 Aligned_cols=344 Identities=10% Similarity=-0.053 Sum_probs=268.0
Q ss_pred hhhhHHHHHhhhC--CCChhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHH
Q 040338 33 LIDDDYRVFCDIG--PRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAF 110 (385)
Q Consensus 33 ~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 110 (385)
++++|...|+++. .|+...|..+..++.. .|++++|...++.+.+.+ +.+..++..+..+|.+.|++++|...|
T Consensus 21 ~~~~A~~~~~~al~~~p~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 96 (514)
T 2gw1_A 21 KYDDAIKYYNWALELKEDPVFYSNLSACYVS---VGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFDL 96 (514)
T ss_dssp CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCccHHHHHhHHHHHHH---HhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 5666666666554 5788888888888777 899999999999998875 346678888999999999999999999
Q ss_pred HhccCCCcccccc------------chHHH--------------------------------------HHHhcCCC----
Q 040338 111 LRMLNPSLFCWKF------------GIIRL--------------------------------------LIMFQKMP---- 136 (385)
Q Consensus 111 ~~m~~~~~~~~~~------------~~~~a--------------------------------------~~~~~~~~---- 136 (385)
+++.+.+...... ....+ ...+....
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (514)
T 2gw1_A 97 SVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELT 176 (514)
T ss_dssp HHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCC
T ss_pred HHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHH
Confidence 8886554321110 00000 00000000
Q ss_pred -----CC-CcchHHHHHHHHHh---CCCchHHHHHHHHHHH-----CCCC-------C-CHhhHHHHHHHhcCccCccch
Q 040338 137 -----ER-DLVSWNTMISILTR---HGFGFETLCTFIELWN-----HGFG-------L-SSMLYATAFSARASVYDLEWG 194 (385)
Q Consensus 137 -----~~-~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~-----~g~~-------p-~~~t~~~ll~~~~~~~~~~~a 194 (385)
.| +...+..+...+.. .|++++|..+|+++.+ ..-. | +..++..+...+...|++++|
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 256 (514)
T 2gw1_A 177 FANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGA 256 (514)
T ss_dssp CSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHH
Confidence 01 13333334444443 7899999999999887 3112 2 355677788888899999999
Q ss_pred hhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCC------------CCchhhHHHHHHHHHHcCCChhHHHHHHHhccc--
Q 040338 195 PHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNG------------IESSIQIGKALVTMYAEGGSTQKADLAFELMSR-- 260 (385)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-- 260 (385)
...++.+.+..+. ..++..+...|...|+.+ .+.+..++..+...+...|++++|...|++..+
T Consensus 257 ~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 334 (514)
T 2gw1_A 257 HEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD 334 (514)
T ss_dssp HHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 9999999988755 888888999999999887 445677889999999999999999999998865
Q ss_pred -CChhhHHHHHHHHHhcCCCCchHHHH------------HHHHHHHHhcccCChhhHHHHHHHHHhccc--hh------h
Q 040338 261 -RNMISWMVLISAFSQAGVLEKPRFFF------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TC------Y 319 (385)
Q Consensus 261 -~~~~~~~~li~~~~~~g~~~~a~~~~------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~------~ 319 (385)
.+...+..+...+...|++++|+..+ ++..+...+...|++++|...++++.+..+ .. .
T Consensus 335 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 414 (514)
T 2gw1_A 335 PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAP 414 (514)
T ss_dssp SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHH
Confidence 35678889999999999999999998 788899999999999999999999988766 22 8
Q ss_pred HHHHHHHHHc---cCCHHHHHHHHHhCCCC-C-CcchHHHHHHHHHhcCChHHHHHHHHHHHhccccC
Q 040338 320 FVCMVDLLGL---SGLLGEAKKLIDEMPSK-P-TCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKV 382 (385)
Q Consensus 320 ~~~li~~~~~---~g~~~~A~~~~~~m~~~-p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 382 (385)
+..+...+.. .|++++|.+.|+.+... | +..++..+...|...|++++|...+++..+.+|..
T Consensus 415 ~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 482 (514)
T 2gw1_A 415 LVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTM 482 (514)
T ss_dssp HHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSH
T ss_pred HHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcccc
Confidence 8899999999 99999999999988653 3 56688899999999999999999999999988764
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.88 E-value=7.6e-20 Score=168.18 Aligned_cols=302 Identities=10% Similarity=-0.004 Sum_probs=242.0
Q ss_pred hhhhHHHHHhhhC---CCChhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHH
Q 040338 33 LIDDDYRVFCDIG---PRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109 (385)
Q Consensus 33 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 109 (385)
++++|..+|+++. +.+..+|..+...+.. .|++++|...++.+.+.+ +.+..++..+..+|.+.|++++|.+.
T Consensus 41 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 116 (450)
T 2y4t_A 41 QLADALSQFHAAVDGDPDNYIAYYRRATVFLA---MGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDD 116 (450)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH---CCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888888888765 4567888888888777 899999999999999875 34678999999999999999999999
Q ss_pred HHhccCCCccccccchHHHHHHhcCCCCCCc---chHHHHH------------HHHHhCCCchHHHHHHHHHHHCCCCCC
Q 040338 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDL---VSWNTMI------------SILTRHGFGFETLCTFIELWNHGFGLS 174 (385)
Q Consensus 110 ~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~li------------~~~~~~~~~~~a~~~~~~m~~~g~~p~ 174 (385)
|+++.+.+ +.+. ..+..+. ..+.+.|++++|+..|+++.+. .+.+
T Consensus 117 ~~~~~~~~-------------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~ 176 (450)
T 2y4t_A 117 FKKVLKSN-------------------PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV-CVWD 176 (450)
T ss_dssp HHHHHTSC-------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTC
T ss_pred HHHHHhcC-------------------CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC
Confidence 99987765 2344 5555553 4488999999999999999875 2346
Q ss_pred HhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHH
Q 040338 175 SMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLA 254 (385)
Q Consensus 175 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 254 (385)
..++..+..++.+.|++++|.+.++.+.+..+ .+..++..+...|...|++++|+..
T Consensus 177 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------------------~~~~~~~~l~~~~~~~g~~~~A~~~ 233 (450)
T 2y4t_A 177 AELRELRAECFIKEGEPRKAISDLKAASKLKN-----------------------DNTEAFYKISTLYYQLGDHELSLSE 233 (450)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-----------------------SCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----------------------CCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 78889999999999999999999999987642 2344567777888888899999999
Q ss_pred HHhccc--C-ChhhHHHH------------HHHHHhcCCCCchHHHH----------------HHHHHHHHhcccCChhh
Q 040338 255 FELMSR--R-NMISWMVL------------ISAFSQAGVLEKPRFFF----------------FFVSLLSGCSHSGPVTK 303 (385)
Q Consensus 255 ~~~m~~--~-~~~~~~~l------------i~~~~~~g~~~~a~~~~----------------~~~~l~~~~~~~~~~~~ 303 (385)
|+++.+ | +...+..+ ...+.+.|++++|+..+ .+..+...+.+.|++++
T Consensus 234 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~ 313 (450)
T 2y4t_A 234 VRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVE 313 (450)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHH
Confidence 998865 3 33444444 78888999999999888 57788899999999999
Q ss_pred HHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-CC-cchHHHHHH------------HHHhcC----
Q 040338 304 GKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-PT-CVIWGALLG------------ACCSHY---- 363 (385)
Q Consensus 304 a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p~-~~~~~~li~------------~~~~~g---- 363 (385)
|...++++.+..+ ...+..+..+|...|++++|.+.|+++.+. |+ ...+..+.. .|...|
T Consensus 314 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~ 393 (450)
T 2y4t_A 314 AIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRN 393 (450)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTT
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCcc
Confidence 9999999988766 888999999999999999999999998764 54 445555552 233344
Q ss_pred -ChHHHHHHHHH-HHhcccc
Q 040338 364 -NTKLAELVMRN-LLQLDVK 381 (385)
Q Consensus 364 -~~~~a~~~~~~-~~~~~~~ 381 (385)
+.+++.+.+++ ..+..|.
T Consensus 394 ~~~~~~~~~y~~~~l~~~pd 413 (450)
T 2y4t_A 394 AKKQEIIKAYRKLALQWHPD 413 (450)
T ss_dssp CCTTHHHHHHHHHHHHSCGG
T ss_pred CCHHHHHHHHHHHHHHhCCC
Confidence 55677888876 5555554
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.84 E-value=6.6e-19 Score=165.58 Aligned_cols=321 Identities=9% Similarity=-0.007 Sum_probs=227.4
Q ss_pred hhhhHHHHHhhhC---CCChhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHH
Q 040338 33 LIDDDYRVFCDIG---PRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109 (385)
Q Consensus 33 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 109 (385)
++++|...|+++. +.++..|..+...+.. .|++++|.+.++++.+.+ +.+..++..+..+|...|++++|.+.
T Consensus 40 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~ 115 (537)
T 3fp2_A 40 NFNEAIKYYQYAIELDPNEPVFYSNISACYIS---TGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFD 115 (537)
T ss_dssp CCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred cHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH---cCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777777654 3456777777777666 788888888888888765 34677788888888888888888888
Q ss_pred HHhccCCCcccc--------c-----------------------------------------------------------
Q 040338 110 FLRMLNPSLFCW--------K----------------------------------------------------------- 122 (385)
Q Consensus 110 ~~~m~~~~~~~~--------~----------------------------------------------------------- 122 (385)
|+.+........ .
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (537)
T 3fp2_A 116 LSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYAL 195 (537)
T ss_dssp HHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHH
T ss_pred HHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHH
Confidence 854421110000 0
Q ss_pred --------------------cchHHHHHHhcCCCC--CC--------cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCC
Q 040338 123 --------------------FGIIRLLIMFQKMPE--RD--------LVSWNTMISILTRHGFGFETLCTFIELWNHGFG 172 (385)
Q Consensus 123 --------------------~~~~~a~~~~~~~~~--~~--------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 172 (385)
+++++|...|.++.. |+ ..++..+...+...|++++|...|++..+. .
T Consensus 196 ~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~ 273 (537)
T 3fp2_A 196 LSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--H 273 (537)
T ss_dssp HHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--C
Confidence 244455555544422 21 113444445555566666666666666553 3
Q ss_pred CCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHH
Q 040338 173 LSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKAD 252 (385)
Q Consensus 173 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~ 252 (385)
|+...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|+
T Consensus 274 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----------------------~~~~~~~~~l~~~~~~~~~~~~A~ 330 (537)
T 3fp2_A 274 PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-----------------------PEYPPTYYHRGQMYFILQDYKNAK 330 (537)
T ss_dssp CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-----------------------TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-----------------------CCCHHHHHHHHHHHHhcCCHHHHH
Confidence 445555555566666666666666666655543 234556778888888899999999
Q ss_pred HHHHhccc--C-ChhhHHHHHHHHHhcCCCCchHHHH------------HHHHHHHHhcccCChhhHHHHHHHHHhccc-
Q 040338 253 LAFELMSR--R-NMISWMVLISAFSQAGVLEKPRFFF------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY- 316 (385)
Q Consensus 253 ~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~- 316 (385)
..|++..+ | +...+..+...+...|++++|+..+ .+..+...+...|++++|...++++.+..+
T Consensus 331 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 331 EDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 99998875 3 5678889999999999999999998 888899999999999999999999888766
Q ss_pred -------hhhHHHHHHHHHcc----------CCHHHHHHHHHhCCCC-C-CcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 040338 317 -------TCYFVCMVDLLGLS----------GLLGEAKKLIDEMPSK-P-TCVIWGALLGACCSHYNTKLAELVMRNLLQ 377 (385)
Q Consensus 317 -------~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~-p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 377 (385)
...+......+.+. |++++|...|++..+. | +...|..+...|...|++++|...+++..+
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 12234445677777 9999999999988763 4 567889999999999999999999999998
Q ss_pred ccccC
Q 040338 378 LDVKV 382 (385)
Q Consensus 378 ~~~~~ 382 (385)
..|..
T Consensus 491 ~~~~~ 495 (537)
T 3fp2_A 491 LARTM 495 (537)
T ss_dssp HC--C
T ss_pred hCCCc
Confidence 87764
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.84 E-value=6.2e-19 Score=164.72 Aligned_cols=307 Identities=8% Similarity=-0.107 Sum_probs=251.3
Q ss_pred HHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHH
Q 040338 52 YNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIM 131 (385)
Q Consensus 52 ~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~ 131 (385)
|...-..+.. .|++++|...|+++.+.. |+..+|..+..+|.+.|++++|.+.|+++.+.+
T Consensus 9 ~~~~g~~~~~---~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------------- 69 (514)
T 2gw1_A 9 LKDKGNQFFR---NKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-------------- 69 (514)
T ss_dssp HHHHHHHHHH---TSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHH---hccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--------------
Confidence 3444445445 899999999999999975 789999999999999999999999999887655
Q ss_pred hcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-------------------------------------
Q 040338 132 FQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLS------------------------------------- 174 (385)
Q Consensus 132 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~------------------------------------- 174 (385)
+.+..+|..+..++.+.|++++|...|+++.+.+...+
T Consensus 70 -----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 144 (514)
T 2gw1_A 70 -----PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELS 144 (514)
T ss_dssp -----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------
T ss_pred -----hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 35677899999999999999999999999877642100
Q ss_pred -----------------------------------------HhhHHHHHHHhc---CccCccchhhHHHHHHH-----hC
Q 040338 175 -----------------------------------------SMLYATAFSARA---SVYDLEWGPHLHSRVVH-----ME 205 (385)
Q Consensus 175 -----------------------------------------~~t~~~ll~~~~---~~~~~~~a~~~~~~~~~-----~~ 205 (385)
...+......+. +.|++++|...++.+.+ ..
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 224 (514)
T 2gw1_A 145 TQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLD 224 (514)
T ss_dssp ------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred CChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhc
Confidence 222222222222 48999999999999988 31
Q ss_pred C--------CCchHHHHHHHHHHHhcCCCC-----------CCchhhHHHHHHHHHHcCCChhHHHHHHHhccc---CCh
Q 040338 206 P--------SLDVFVGSGLIDMYLKCGCNG-----------IESSIQIGKALVTMYAEGGSTQKADLAFELMSR---RNM 263 (385)
Q Consensus 206 ~--------~~~~~~~~~li~~~~~~g~~~-----------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~ 263 (385)
. +.+..++..+...+...|+.+ ..|+..++..+...+...|++++|...++...+ .+.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 304 (514)
T 2gw1_A 225 KNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNS 304 (514)
T ss_dssp TSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCT
T ss_pred cCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCH
Confidence 1 234567778888888888776 334488889999999999999999999998876 366
Q ss_pred hhHHHHHHHHHhcCCCCchHHHH------------HHHHHHHHhcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHc
Q 040338 264 ISWMVLISAFSQAGVLEKPRFFF------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGL 329 (385)
Q Consensus 264 ~~~~~li~~~~~~g~~~~a~~~~------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~ 329 (385)
..+..+...|...|++++|+..+ ++..+...+...|++++|...++.+.+..+ ...+..+...+.+
T Consensus 305 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 384 (514)
T 2gw1_A 305 SVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTD 384 (514)
T ss_dssp HHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHH
Confidence 78889999999999999999998 788899999999999999999999988776 7788889999999
Q ss_pred cCCHHHHHHHHHhCCCC-C---C----cchHHHHHHHHHh---cCChHHHHHHHHHHHhccccC
Q 040338 330 SGLLGEAKKLIDEMPSK-P---T----CVIWGALLGACCS---HYNTKLAELVMRNLLQLDVKV 382 (385)
Q Consensus 330 ~g~~~~A~~~~~~m~~~-p---~----~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~~~~~ 382 (385)
.|++++|.+.++++... | + ...|..+...|.. .|++++|...++++.+..+..
T Consensus 385 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 448 (514)
T 2gw1_A 385 KNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRS 448 (514)
T ss_dssp TTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTC
T ss_pred CCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCccc
Confidence 99999999999988653 2 2 3388999999999 999999999999998877654
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.82 E-value=4.4e-18 Score=151.14 Aligned_cols=286 Identities=10% Similarity=-0.031 Sum_probs=233.6
Q ss_pred hhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHH
Q 040338 49 LFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRL 128 (385)
Q Consensus 49 ~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a 128 (385)
+..+..+-..+.. .|++++|...++.+.+.. +.+..++..+...+...|++++|...|+++.+.+
T Consensus 3 ~~~~~~~~~~~~~---~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----------- 67 (359)
T 3ieg_A 3 VEKHLELGKKLLA---AGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK----------- 67 (359)
T ss_dssp HHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHH---cCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----------
Confidence 4455566666555 899999999999999874 4467899999999999999999999998876544
Q ss_pred HHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC----CHhhHHHH------------HHHhcCccCcc
Q 040338 129 LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGL----SSMLYATA------------FSARASVYDLE 192 (385)
Q Consensus 129 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p----~~~t~~~l------------l~~~~~~~~~~ 192 (385)
+.+...|..+...+...|++++|...|++..+. .| +...+..+ ...+...|+++
T Consensus 68 --------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 68 --------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYT 137 (359)
T ss_dssp --------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred --------CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHH
Confidence 346678999999999999999999999999875 45 33344333 47788999999
Q ss_pred chhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc---CChhhHHHH
Q 040338 193 WGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR---RNMISWMVL 269 (385)
Q Consensus 193 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~l 269 (385)
+|.+.++.+.+..+. +...+..+...+...|++++|...+++..+ .+..++..+
T Consensus 138 ~A~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 194 (359)
T 3ieg_A 138 AAITFLDKILEVCVW-----------------------DAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKI 194 (359)
T ss_dssp HHHHHHHHHHHHCTT-----------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-----------------------chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 999999999887542 233456677777888899999999988875 366788888
Q ss_pred HHHHHhcCCCCchHHHH------------HH------------HHHHHHhcccCChhhHHHHHHHHHhccc------hhh
Q 040338 270 ISAFSQAGVLEKPRFFF------------FF------------VSLLSGCSHSGPVTKGKHYFTAMAKFTY------TCY 319 (385)
Q Consensus 270 i~~~~~~g~~~~a~~~~------------~~------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~ 319 (385)
...+...|++++|...+ .+ ..+...+...|++++|...++++.+..+ ...
T Consensus 195 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 274 (359)
T 3ieg_A 195 STLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRS 274 (359)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHH
Confidence 88899999999998888 22 2336678899999999999999988776 234
Q ss_pred HHHHHHHHHccCCHHHHHHHHHhCCC-CC-CcchHHHHHHHHHhcCChHHHHHHHHHHHhccccC
Q 040338 320 FVCMVDLLGLSGLLGEAKKLIDEMPS-KP-TCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKV 382 (385)
Q Consensus 320 ~~~li~~~~~~g~~~~A~~~~~~m~~-~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 382 (385)
+..+...+...|++++|.+.+++..+ .| +..+|..+...|...|++++|...+++..+.+|..
T Consensus 275 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~ 339 (359)
T 3ieg_A 275 KERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEND 339 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 55688899999999999999998876 34 67789999999999999999999999999988764
No 13
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.82 E-value=3.2e-21 Score=183.97 Aligned_cols=149 Identities=16% Similarity=0.127 Sum_probs=119.3
Q ss_pred hhHHHHHHHHHhhhccCChHHHHHHHHHHH---HhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchH
Q 040338 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVK---KFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGII 126 (385)
Q Consensus 50 ~~~~~li~~~~~~~~~~~~~~a~~~~~~m~---~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 126 (385)
.|||+||.+||+ .|++++|.++|++|. +.|+.||+.|||+||++||+.|++++|.++|++|.+.|+
T Consensus 128 ~TynaLIdglcK---~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~-------- 196 (1134)
T 3spa_A 128 QRLLAFFKCCLL---TDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGL-------- 196 (1134)
T ss_dssp HHHHHHHHHHHH---HTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC--------
T ss_pred HHHHHHHHHHHh---CCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--------
Confidence 589999999888 799999999998876 458999999999999999999999999999999999998
Q ss_pred HHHHHhcCCCCCCcchHHHHHHHHHhCCCc-hHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhC
Q 040338 127 RLLIMFQKMPERDLVSWNTMISILTRHGFG-FETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHME 205 (385)
Q Consensus 127 ~a~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 205 (385)
.||+.|||+||.++++.|+. ++|.++|++|.+.|+.||..||+.++.++.+.+-+ +..+.+ .-+
T Consensus 197 ----------~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL----~~Vrkv-~P~ 261 (1134)
T 3spa_A 197 ----------TPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVL----KAVHKV-KPT 261 (1134)
T ss_dssp ----------CCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHH----HHHGGG-CCC
T ss_pred ----------CCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHH----HHHHHh-Ccc
Confidence 89999999999999999985 68899999999999999999999888655543322 222222 223
Q ss_pred CCCc------hHHHHHHHHHHHhcC
Q 040338 206 PSLD------VFVGSGLIDMYLKCG 224 (385)
Q Consensus 206 ~~~~------~~~~~~li~~~~~~g 224 (385)
+.|+ ..+...|.+.|.+.+
T Consensus 262 f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 262 FSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp CCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred cCCCCCCcccccchHHHHHHHccCC
Confidence 4443 344444555565555
No 14
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.81 E-value=2.5e-20 Score=177.89 Aligned_cols=142 Identities=12% Similarity=0.055 Sum_probs=119.6
Q ss_pred chHHHhHHHHHHhcCChhHHHHHHHhccC---CCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHH
Q 040338 87 ESIAKSSIDMHVKCGAVDYAESAFLRMLN---PSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTF 163 (385)
Q Consensus 87 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 163 (385)
..|||+||++||+.|++++|.++|++|.+ .|+ .||+.|||+||.+||+.|++++|.++|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~------------------~PdvvTYNtLI~Glck~G~~~eA~~Lf 188 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRK------------------LLTLDMYNAVMLGWARQGAFKELVYVL 188 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHT------------------TCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCC------------------CCCHhHHHHHHHHHHhCCCHHHHHHHH
Confidence 46899999999999999999999988754 355 799999999999999999999999999
Q ss_pred HHHHHCCCCCCHhhHHHHHHHhcCccCc-cchhhHHHHHHHhCCCCchHHHHHHHHHHHhcC--------CCCCCc----
Q 040338 164 IELWNHGFGLSSMLYATAFSARASVYDL-EWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG--------CNGIES---- 230 (385)
Q Consensus 164 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--------~~~~~~---- 230 (385)
++|.+.|+.||..||+++|.++++.|+. ++|.++|++|.+.|+.||..+|++++....+.+ +.+..|
T Consensus 189 ~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~ 268 (1134)
T 3spa_A 189 FMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQL 268 (1134)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCC
T ss_pred HHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCC
Confidence 9999999999999999999999999985 789999999999999999999996555544443 333222
Q ss_pred --hhhHHHHHHHHHHcCC
Q 040338 231 --SIQIGKALVTMYAEGG 246 (385)
Q Consensus 231 --~~~~~~~li~~~~~~g 246 (385)
.+.+...|.+.|.+.+
T Consensus 269 ~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 269 PPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp CCCCCCCTTTHHHHCCCS
T ss_pred cccccchHHHHHHHccCC
Confidence 2445555666666544
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.79 E-value=1.1e-16 Score=140.60 Aligned_cols=271 Identities=10% Similarity=-0.040 Sum_probs=178.2
Q ss_pred ChhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHH
Q 040338 48 YLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIR 127 (385)
Q Consensus 48 ~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 127 (385)
++..+..+...+.. .|++++|.++++.+.+.. +.+...+..++..+.+.|++++|..+++++.+.+
T Consensus 21 ~~~~~~~~a~~~~~---~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---------- 86 (330)
T 3hym_B 21 NLDVVVSLAERHYY---NCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY---------- 86 (330)
T ss_dssp CCTTHHHHHHHHHH---TTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC----------
T ss_pred hHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC----------
Confidence 44445555555544 677777777777777654 3355566666677777777777777777765443
Q ss_pred HHHHhcCCCCCCcchHHHHHHHHHhCC-CchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCC
Q 040338 128 LLIMFQKMPERDLVSWNTMISILTRHG-FGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEP 206 (385)
Q Consensus 128 a~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 206 (385)
+.+..+|..+...+...| ++++|...|++..+.. +.+...+..+...+...|++++|.+.++...+...
T Consensus 87 ---------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 156 (330)
T 3hym_B 87 ---------PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK 156 (330)
T ss_dssp ---------TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT
T ss_pred ---------cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc
Confidence 345566777777777777 7777777777776542 22455666777777777777777777777776643
Q ss_pred CCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc---CChhhHHHHHHHHHhcCCCCchH
Q 040338 207 SLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR---RNMISWMVLISAFSQAGVLEKPR 283 (385)
Q Consensus 207 ~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~ 283 (385)
. +...+..+...+...|++++|...+++..+ .+...+..+...+...|++++|+
T Consensus 157 ~-----------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~ 213 (330)
T 3hym_B 157 G-----------------------CHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAE 213 (330)
T ss_dssp T-----------------------CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred c-----------------------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHH
Confidence 2 112234455566666677777777776654 24455666666666666666666
Q ss_pred HHH---------------------HHHHHHHHhcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHH
Q 040338 284 FFF---------------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLI 340 (385)
Q Consensus 284 ~~~---------------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~ 340 (385)
..+ ++..+...+...|++++|...+++..+..+ ...+..+...+.+.|++++|.+.|
T Consensus 214 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 293 (330)
T 3hym_B 214 KWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYF 293 (330)
T ss_dssp HHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHH
Confidence 555 455666777777778888888888777666 677777888888888888888888
Q ss_pred HhCCCC-C-CcchHHHHHHHH-HhcCCh
Q 040338 341 DEMPSK-P-TCVIWGALLGAC-CSHYNT 365 (385)
Q Consensus 341 ~~m~~~-p-~~~~~~~li~~~-~~~g~~ 365 (385)
++..+. | +...+..+..++ ...|+.
T Consensus 294 ~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 294 HTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 887764 4 455666666666 444544
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.78 E-value=1.2e-17 Score=146.68 Aligned_cols=257 Identities=10% Similarity=-0.044 Sum_probs=219.2
Q ss_pred cCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHH
Q 040338 83 FVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCT 162 (385)
Q Consensus 83 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 162 (385)
.+.+...+..+...+...|++++|.++|+++.+.+ +.+...+..++..+...|++++|..+
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-------------------p~~~~~~~~~~~~~~~~~~~~~A~~~ 78 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-------------------PFHASCLPVHIGTLVELNKANELFYL 78 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------TTCTTTHHHHHHHHHHHTCHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------------------CCChhhHHHHHHHHHHhhhHHHHHHH
Confidence 46677888899999999999999999999987655 35667788888999999999999999
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHhcCcc-CccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHH
Q 040338 163 FIELWNHGFGLSSMLYATAFSARASVY-DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241 (385)
Q Consensus 163 ~~~m~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~ 241 (385)
++++.+.. +.+...+..+...+...| ++++|.+.++...+..+. +...|..+...
T Consensus 79 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~-----------------------~~~~~~~l~~~ 134 (330)
T 3hym_B 79 SHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKT-----------------------YGPAWIAYGHS 134 (330)
T ss_dssp HHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTT-----------------------CTHHHHHHHHH
T ss_pred HHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCc-----------------------cHHHHHHHHHH
Confidence 99998852 235677888888999999 999999999999876532 23345677778
Q ss_pred HHcCCChhHHHHHHHhccc--C-ChhhHHHHHHHHHhcCCCCchHHHH------------HHHHHHHHhcccCChhhHHH
Q 040338 242 YAEGGSTQKADLAFELMSR--R-NMISWMVLISAFSQAGVLEKPRFFF------------FFVSLLSGCSHSGPVTKGKH 306 (385)
Q Consensus 242 ~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~------------~~~~l~~~~~~~~~~~~a~~ 306 (385)
+...|++++|+..|++..+ | +...+..+...|...|++++|+..+ .+..+...+...|++++|..
T Consensus 135 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 214 (330)
T 3hym_B 135 FAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEK 214 (330)
T ss_dssp HHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHH
Confidence 8888899999999998875 3 4577888999999999999999999 88899999999999999999
Q ss_pred HHHHHHhcc---------c--hhhHHHHHHHHHccCCHHHHHHHHHhCCCC--CCcchHHHHHHHHHhcCChHHHHHHHH
Q 040338 307 YFTAMAKFT---------Y--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK--PTCVIWGALLGACCSHYNTKLAELVMR 373 (385)
Q Consensus 307 ~~~~~~~~~---------~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~ 373 (385)
.++++.+.. . ...+..+...|.+.|++++|.+.+++..+. .+...|..+...|...|++++|...++
T Consensus 215 ~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 294 (330)
T 3hym_B 215 WFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFH 294 (330)
T ss_dssp HHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHH
Confidence 999998864 2 668889999999999999999999988763 456789999999999999999999999
Q ss_pred HHHhccccC
Q 040338 374 NLLQLDVKV 382 (385)
Q Consensus 374 ~~~~~~~~~ 382 (385)
+..+..|..
T Consensus 295 ~al~~~p~~ 303 (330)
T 3hym_B 295 TALGLRRDD 303 (330)
T ss_dssp TTTTTCSCC
T ss_pred HHHccCCCc
Confidence 999888764
No 17
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.78 E-value=1.6e-16 Score=141.01 Aligned_cols=285 Identities=9% Similarity=-0.028 Sum_probs=218.8
Q ss_pred hhhhHHHHHhhhC---CCChhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHH
Q 040338 33 LIDDDYRVFCDIG---PRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109 (385)
Q Consensus 33 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 109 (385)
++++|...|+++. +.+...|..+...+.. .|++++|...++.+.+.. +.+...+..+..+|...|++++|...
T Consensus 18 ~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~---~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 93 (359)
T 3ieg_A 18 QLADALSQFHAAVDGDPDNYIAYYRRATVFLA---MGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDEAEDD 93 (359)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHHHHHH
Confidence 4555555555443 3456677777777666 899999999999999874 33678899999999999999999999
Q ss_pred HHhccCCCccccccchHHHHHHhcCCCCCCcchHHHH------------HHHHHhCCCchHHHHHHHHHHHCCCCCCHhh
Q 040338 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTM------------ISILTRHGFGFETLCTFIELWNHGFGLSSML 177 (385)
Q Consensus 110 ~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t 177 (385)
|++..+.++.. ..+...+..+ ...+...|++++|..+++++.+. .+.+...
T Consensus 94 ~~~~~~~~~~~----------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~ 156 (359)
T 3ieg_A 94 FKKVLKSNPSE----------------QEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV-CVWDAEL 156 (359)
T ss_dssp HHHHHTSCCCH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHH
T ss_pred HHHHHhcCCcc----------------cChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCchHH
Confidence 99987654100 0233444444 57888999999999999999875 2346778
Q ss_pred HHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHh
Q 040338 178 YATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257 (385)
Q Consensus 178 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 257 (385)
+..+...+...|++++|...++.+.+..+ . +..++..+...+...|++++|...|+.
T Consensus 157 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~----------------------~~~~~~~la~~~~~~~~~~~A~~~~~~ 213 (359)
T 3ieg_A 157 RELRAECFIKEGEPRKAISDLKAASKLKS-D----------------------NTEAFYKISTLYYQLGDHELSLSEVRE 213 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCS-C----------------------CHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-C----------------------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88899999999999999999999987643 1 233456677777778899999999988
Q ss_pred ccc--C-ChhhHH------------HHHHHHHhcCCCCchHHHH----------------HHHHHHHHhcccCChhhHHH
Q 040338 258 MSR--R-NMISWM------------VLISAFSQAGVLEKPRFFF----------------FFVSLLSGCSHSGPVTKGKH 306 (385)
Q Consensus 258 m~~--~-~~~~~~------------~li~~~~~~g~~~~a~~~~----------------~~~~l~~~~~~~~~~~~a~~ 306 (385)
..+ | +...+. .+...+.+.|++++|+..+ .+..+...+...|++++|..
T Consensus 214 a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 214 CLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 865 3 222222 2366688899999998888 35567888999999999999
Q ss_pred HHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-CC-cchHHHHHHHHHh
Q 040338 307 YFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-PT-CVIWGALLGACCS 361 (385)
Q Consensus 307 ~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p~-~~~~~~li~~~~~ 361 (385)
.+++..+..+ ...+..+...+.+.|++++|.+.|++..+. |+ ...+..+..+...
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 294 ICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 9999998777 888899999999999999999999998874 55 4455555555443
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.77 E-value=3.7e-17 Score=146.05 Aligned_cols=303 Identities=11% Similarity=-0.051 Sum_probs=204.5
Q ss_pred CCChHHHHHHHHHHHHcccchhhHHhhhhhHHH-HHhhhC--CC-----ChhhHHHHHHHHHhhhccCChHHHHHHHHHH
Q 040338 7 LKSLPIARKIHAQLISTCLISSIFLQLIDDDYR-VFCDIG--PR-----YLFTYNTMINGGVRCLCVGNIKMALHLHGLV 78 (385)
Q Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~-~~~~~~--~~-----~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m 78 (385)
.+.+..+...++.+.+.+.....+..++++|.. .|++.. .| +...+..+...+.. .|++++|...++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~A~~~~~~a 90 (368)
T 1fch_A 14 VDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQ---EGDLPNAVLLFEAA 90 (368)
T ss_dssp --------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHH---TTCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHcCCchhhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHH---CCCHHHHHHHHHHH
Confidence 345666666777776665554445558899988 887543 11 24557777777666 89999999999999
Q ss_pred HHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchH
Q 040338 79 KKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFE 158 (385)
Q Consensus 79 ~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 158 (385)
.+.. +.+..++..+..+|.+.|++++|.+.|+++.+.+ +.+..++..+...+...|++++
T Consensus 91 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------------~~~~~~~~~l~~~~~~~g~~~~ 150 (368)
T 1fch_A 91 VQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-------------------PDNQTALMALAVSFTNESLQRQ 150 (368)
T ss_dssp HHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-------------------CCCHHHHHHHHHHHHHcCCHHH
Confidence 9874 4477889999999999999999999998876554 4577889999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHhhHHH---------------HHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhc
Q 040338 159 TLCTFIELWNHGFGLSSMLYAT---------------AFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKC 223 (385)
Q Consensus 159 a~~~~~~m~~~g~~p~~~t~~~---------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 223 (385)
|...|+++.+.... +...+.. .+..+...|++++|...++.+.+..+..
T Consensus 151 A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~--------------- 214 (368)
T 1fch_A 151 ACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTS--------------- 214 (368)
T ss_dssp HHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTS---------------
T ss_pred HHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCc---------------
Confidence 99999999886322 2222211 2333337889999999999988875421
Q ss_pred CCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc--C-ChhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcccCC
Q 040338 224 GCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR--R-NMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGP 300 (385)
Q Consensus 224 g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~l~~~~~~~~~ 300 (385)
++..++..+...+.+.|++++|+..|++..+ | +..++. .+...+...|+
T Consensus 215 ------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----------------------~l~~~~~~~g~ 266 (368)
T 1fch_A 215 ------IDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWN----------------------KLGATLANGNQ 266 (368)
T ss_dssp ------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH----------------------HHHHHHHHTTC
T ss_pred ------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHH----------------------HHHHHHHHcCC
Confidence 1234556777778888899999999988765 2 233444 44455555666
Q ss_pred hhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-CC------------cchHHHHHHHHHhcCCh
Q 040338 301 VTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-PT------------CVIWGALLGACCSHYNT 365 (385)
Q Consensus 301 ~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p~------------~~~~~~li~~~~~~g~~ 365 (385)
+++|...++++.+..+ ...+..+...|.+.|++++|.+.|+++... |+ ..+|..+..+|...|++
T Consensus 267 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 346 (368)
T 1fch_A 267 SEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQS 346 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCCh
Confidence 7777788888777666 778888999999999999999999887652 22 46899999999999999
Q ss_pred HHHHHHHHHHH
Q 040338 366 KLAELVMRNLL 376 (385)
Q Consensus 366 ~~a~~~~~~~~ 376 (385)
++|..++++..
T Consensus 347 ~~A~~~~~~~l 357 (368)
T 1fch_A 347 DAYGAADARDL 357 (368)
T ss_dssp GGHHHHHTTCH
T ss_pred HhHHHhHHHHH
Confidence 99998877543
No 19
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.75 E-value=2.1e-18 Score=152.95 Aligned_cols=269 Identities=12% Similarity=-0.002 Sum_probs=130.7
Q ss_pred hhhhHHHHHhhhCCCChhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHh
Q 040338 33 LIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLR 112 (385)
Q Consensus 33 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 112 (385)
++++|..++++++.|+ +|..+..++.. .|++++|++.|.+ .+|..+|..++..+...|++++|++.++.
T Consensus 18 ~ld~A~~fae~~~~~~--vWs~La~A~l~---~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 18 NLDRAYEFAERCNEPA--VWSQLAKAQLQ---KGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CHHHHHHHHHhCCChH--HHHHHHHHHHH---cCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 6899999999987664 89999999777 8999999999964 35778999999999999999999997765
Q ss_pred ccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCcc
Q 040338 113 MLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLE 192 (385)
Q Consensus 113 m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 192 (385)
..+ . .+++.+.+.|+.+|.+.|+++++.++++ .|+..+|..+...|...|.++
T Consensus 87 ark-~-------------------~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~ye 139 (449)
T 1b89_A 87 ARK-K-------------------ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYD 139 (449)
T ss_dssp ------------------------------------------CHHHHTTTTT-------CC----------------CTT
T ss_pred HHH-h-------------------CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHH
Confidence 544 2 2557788899999999999999888884 477789999999999999999
Q ss_pred chhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhcccCChhhHHHHHHH
Q 040338 193 WGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISA 272 (385)
Q Consensus 193 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~ 272 (385)
+|...|..+ ..|..++.++.+.|++++|.+.+.++ .++.+|..++.+
T Consensus 140 eA~~~Y~~a-------------------------------~n~~~LA~~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~a 186 (449)
T 1b89_A 140 AAKLLYNNV-------------------------------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFA 186 (449)
T ss_dssp THHHHHHHT-------------------------------TCHHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHH
T ss_pred HHHHHHHHh-------------------------------hhHHHHHHHHHHhccHHHHHHHHHHc--CCchhHHHHHHH
Confidence 999999976 13577888888888999999999988 478999999999
Q ss_pred HHhcCCCCchHHHH--------HHHHHHHHhcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHc--cCCHHHHHHHH
Q 040338 273 FSQAGVLEKPRFFF--------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGL--SGLLGEAKKLI 340 (385)
Q Consensus 273 ~~~~g~~~~a~~~~--------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~--~g~~~~A~~~~ 340 (385)
|+..|+++.|.... -...++..|.+.|.+++|..+++....... ...|+-|...|++ -+++.+.+++|
T Consensus 187 Cv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~ 266 (449)
T 1b89_A 187 CVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELF 266 (449)
T ss_dssp HHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999998886655 444688889999999999999999887766 7777777777776 45677777777
Q ss_pred HhCCCC-------CCcchHHHHHHHHHhcCChHHHHHHH
Q 040338 341 DEMPSK-------PTCVIWGALLGACCSHYNTKLAELVM 372 (385)
Q Consensus 341 ~~m~~~-------p~~~~~~~li~~~~~~g~~~~a~~~~ 372 (385)
..-..- -+...|..++-.|...++++.|...+
T Consensus 267 ~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 267 WSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp STTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 654442 24678999999999999999887643
No 20
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.75 E-value=1.9e-16 Score=148.84 Aligned_cols=295 Identities=9% Similarity=-0.054 Sum_probs=222.7
Q ss_pred hhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHH
Q 040338 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLL 129 (385)
Q Consensus 50 ~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~ 129 (385)
..|..+-..+.. .|++++|...|+++.+.. +.+..++..+..+|.+.|++++|++.|+++.+.+
T Consensus 26 ~~~~~~g~~~~~---~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------------ 89 (537)
T 3fp2_A 26 VQLKNRGNHFFT---AKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK------------ 89 (537)
T ss_dssp HHHHHHHHHHHH---TTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHH---hccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------------
Confidence 345555556555 899999999999999875 4578899999999999999999999999987655
Q ss_pred HHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCC------------------------------------CCC
Q 040338 130 IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG------------------------------------FGL 173 (385)
Q Consensus 130 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g------------------------------------~~p 173 (385)
+.+..++..+..++...|++++|...|+.+.... ..|
T Consensus 90 -------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~ 162 (537)
T 3fp2_A 90 -------PDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLP 162 (537)
T ss_dssp -------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCC
T ss_pred -------CchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccc
Confidence 3566778888888888888888888886331110 011
Q ss_pred CHhhH------------------------------HHHHHHhcCc--------cCccchhhHHHHHHHhCCCCchHHHHH
Q 040338 174 SSMLY------------------------------ATAFSARASV--------YDLEWGPHLHSRVVHMEPSLDVFVGSG 215 (385)
Q Consensus 174 ~~~t~------------------------------~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~ 215 (385)
+.... ..+...+... |++++|..+++.+.+..+. +...+..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~ 241 (537)
T 3fp2_A 163 SNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLREN 241 (537)
T ss_dssp CHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHH
T ss_pred hHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHH
Confidence 11111 1111111111 2455555566555544321 1222222
Q ss_pred HHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc--CChhhHHHHHHHHHhcCCCCchHHHH-------
Q 040338 216 LIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR--RNMISWMVLISAFSQAGVLEKPRFFF------- 286 (385)
Q Consensus 216 li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~a~~~~------- 286 (385)
+ ..++..+...+...|++++|...|+...+ |+...+..+...+...|++++|+..+
T Consensus 242 ~---------------~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 306 (537)
T 3fp2_A 242 A---------------ALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN 306 (537)
T ss_dssp H---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC
T ss_pred H---------------HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC
Confidence 2 23456677888899999999999999875 67788888999999999999999998
Q ss_pred -----HHHHHHHHhcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-C-CcchHHHHHH
Q 040338 287 -----FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-P-TCVIWGALLG 357 (385)
Q Consensus 287 -----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p-~~~~~~~li~ 357 (385)
++..+...+...|++++|...++++.+..+ ...+..+...+...|++++|.+.++++.+. | +...|..+..
T Consensus 307 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 386 (537)
T 3fp2_A 307 PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAE 386 (537)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 888999999999999999999999998877 788889999999999999999999988763 4 4668999999
Q ss_pred HHHhcCChHHHHHHHHHHHhccccCC
Q 040338 358 ACCSHYNTKLAELVMRNLLQLDVKVF 383 (385)
Q Consensus 358 ~~~~~g~~~~a~~~~~~~~~~~~~~~ 383 (385)
.|...|++++|...++++.+..+.+.
T Consensus 387 ~~~~~g~~~~A~~~~~~a~~~~~~~~ 412 (537)
T 3fp2_A 387 ILTDRGDFDTAIKQYDIAKRLEEVQE 412 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHhCCHHHHHHHHHHHHHcCCcch
Confidence 99999999999999999998776544
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.73 E-value=2.7e-17 Score=146.92 Aligned_cols=268 Identities=10% Similarity=-0.053 Sum_probs=193.1
Q ss_pred cCChHHHHH-HHHHHHHhcc---CCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCc
Q 040338 65 VGNIKMALH-LHGLVKKFYF---VSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDL 140 (385)
Q Consensus 65 ~~~~~~a~~-~~~~m~~~g~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~ 140 (385)
.|++++|.. .+++..+... ..+...+..+...+.+.|++++|...|+++.+.+ +.+.
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-------------------p~~~ 98 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-------------------PKHM 98 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-------------------TTCH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------------------CCCH
Confidence 578888887 7775554321 1135678889999999999999999999987665 4677
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHH
Q 040338 141 VSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMY 220 (385)
Q Consensus 141 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 220 (385)
.+|..+..++.+.|++++|...|+++.+.. +.+..++..+...+...|++++|...++.+.+..+..... +..+....
T Consensus 99 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~ 176 (368)
T 1fch_A 99 EAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHL-VTPAEEGA 176 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGG-CC------
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHH-HHHHHHHh
Confidence 889999999999999999999999998863 3367889999999999999999999999999875432211 10000000
Q ss_pred HhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc--CC---hhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHh
Q 040338 221 LKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR--RN---MISWMVLISAFSQAGVLEKPRFFFFFVSLLSGC 295 (385)
Q Consensus 221 ~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~l~~~~ 295 (385)
+. ..+ ...+..+ ..+...|++++|...|+++.+ |+ ..++. .+...+
T Consensus 177 ---~~--~~~-~~~~~~~-~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~----------------------~l~~~~ 227 (368)
T 1fch_A 177 ---GG--AGL-GPSKRIL-GSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQC----------------------GLGVLF 227 (368)
T ss_dssp ---------------CTT-HHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHH----------------------HHHHHH
T ss_pred ---hh--hcc-cHHHHHH-HHHhhcccHHHHHHHHHHHHHhCcCcccHHHHH----------------------HHHHHH
Confidence 00 000 0011122 233377899999999998875 22 33333 444555
Q ss_pred cccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-C-CcchHHHHHHHHHhcCChHHHHHH
Q 040338 296 SHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-P-TCVIWGALLGACCSHYNTKLAELV 371 (385)
Q Consensus 296 ~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p-~~~~~~~li~~~~~~g~~~~a~~~ 371 (385)
...|++++|...++++.+..+ ...+..+...+.+.|++++|.+.|+++... | +...|..+...|.+.|++++|...
T Consensus 228 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 307 (368)
T 1fch_A 228 NLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEH 307 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 556667777888888777666 778899999999999999999999998652 4 567899999999999999999999
Q ss_pred HHHHHhccccC
Q 040338 372 MRNLLQLDVKV 382 (385)
Q Consensus 372 ~~~~~~~~~~~ 382 (385)
++++.+..|..
T Consensus 308 ~~~al~~~~~~ 318 (368)
T 1fch_A 308 FLEALNMQRKS 318 (368)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHhCCCC
Confidence 99999887765
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.72 E-value=7.7e-17 Score=143.99 Aligned_cols=256 Identities=9% Similarity=-0.048 Sum_probs=189.7
Q ss_pred CchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHH
Q 040338 86 DESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIE 165 (385)
Q Consensus 86 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 165 (385)
+...+..+...+.+.|++++|.+.|+++.+.+ +.+..+|..+...+.+.|++++|+..|++
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 124 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-------------------PGDAEAWQFLGITQAENENEQAAIVALQR 124 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------------------cCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 44557777777777888888888887765544 34566777788888888888888888888
Q ss_pred HHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcC
Q 040338 166 LWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEG 245 (385)
Q Consensus 166 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~ 245 (385)
+.+.. +.+..++..+..++...|++++|...++.+.+..+... ..+..+ ......+..+...+...
T Consensus 125 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~~------------~~~~~~~~~l~~~~~~~ 190 (365)
T 4eqf_A 125 CLELQ-PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYK-YLVKNK------------KGSPGLTRRMSKSPVDS 190 (365)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHH-CC-------------------------------CC
T ss_pred HHhcC-CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccch-HHHhhh------------ccchHHHHHHHHHHhhh
Confidence 77642 22466777777788888888888888888777542110 001000 01123345667888889
Q ss_pred CChhHHHHHHHhccc--C---ChhhHHHHHHHHHhcCCCCchHHHH------------HHHHHHHHhcccCChhhHHHHH
Q 040338 246 GSTQKADLAFELMSR--R---NMISWMVLISAFSQAGVLEKPRFFF------------FFVSLLSGCSHSGPVTKGKHYF 308 (385)
Q Consensus 246 g~~~~A~~~~~~m~~--~---~~~~~~~li~~~~~~g~~~~a~~~~------------~~~~l~~~~~~~~~~~~a~~~~ 308 (385)
|++++|+..|+++.+ | +..++..+...|...|++++|+..+ +|..+..+|...|++++|...+
T Consensus 191 g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 270 (365)
T 4eqf_A 191 SVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAY 270 (365)
T ss_dssp HHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999875 3 5778999999999999999999998 8999999999999999999999
Q ss_pred HHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-C-------------CcchHHHHHHHHHhcCChHHHHHHH
Q 040338 309 TAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-P-------------TCVIWGALLGACCSHYNTKLAELVM 372 (385)
Q Consensus 309 ~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p-------------~~~~~~~li~~~~~~g~~~~a~~~~ 372 (385)
+++.+..+ ...+..+..+|.+.|++++|.+.|+++.+. | +...|..+..++...|+.+.+....
T Consensus 271 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 350 (365)
T 4eqf_A 271 TRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAAN 350 (365)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 99998877 788889999999999999999999988652 2 2678999999999999999888876
Q ss_pred HH
Q 040338 373 RN 374 (385)
Q Consensus 373 ~~ 374 (385)
++
T Consensus 351 ~~ 352 (365)
T 4eqf_A 351 LG 352 (365)
T ss_dssp TT
T ss_pred Hh
Confidence 65
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.71 E-value=7.1e-16 Score=137.70 Aligned_cols=251 Identities=11% Similarity=-0.018 Sum_probs=201.5
Q ss_pred ChhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHH
Q 040338 48 YLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIR 127 (385)
Q Consensus 48 ~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 127 (385)
+...|..+...+.. .|++++|...|+.+.+.. +.+..++..+..+|.+.|++++|...|++..+.+
T Consensus 64 ~~~~~~~~~~~~~~---~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---------- 129 (365)
T 4eqf_A 64 DWPGAFEEGLKRLK---EGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ---------- 129 (365)
T ss_dssp TCTTHHHHHHHHHH---HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------
T ss_pred chhHHHHHHHHHHH---CCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----------
Confidence 34557777777666 899999999999999875 4478899999999999999999999999886654
Q ss_pred HHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-----------HhhHHHHHHHhcCccCccchhh
Q 040338 128 LLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLS-----------SMLYATAFSARASVYDLEWGPH 196 (385)
Q Consensus 128 a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-----------~~t~~~ll~~~~~~~~~~~a~~ 196 (385)
+.+..+|..+...|...|++++|...|+++.+. .|+ ...+..+...+.+.|++++|.+
T Consensus 130 ---------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 198 (365)
T 4eqf_A 130 ---------PNNLKALMALAVSYTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKE 198 (365)
T ss_dssp ---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHH
T ss_pred ---------CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHH
Confidence 356789999999999999999999999999874 332 2223345788999999999999
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc---CChhhHHHHHHHH
Q 040338 197 LHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR---RNMISWMVLISAF 273 (385)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~ 273 (385)
.++++.+..+.. ++..++..+...|...|++++|+..|++..+ .+..+|..+..+|
T Consensus 199 ~~~~al~~~p~~---------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 257 (365)
T 4eqf_A 199 LYLEAAHQNGDM---------------------IDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATL 257 (365)
T ss_dssp HHHHHHHHSCSS---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCcCc---------------------cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999875431 1334456677777778899999999998865 3577899999999
Q ss_pred HhcCCCCchHHHH------------HHHHHHHHhcccCChhhHHHHHHHHHhccc--------------hhhHHHHHHHH
Q 040338 274 SQAGVLEKPRFFF------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--------------TCYFVCMVDLL 327 (385)
Q Consensus 274 ~~~g~~~~a~~~~------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------------~~~~~~li~~~ 327 (385)
...|++++|+..+ ++..+..+|...|++++|...++++.+..+ ...+..+..++
T Consensus 258 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 337 (365)
T 4eqf_A 258 ANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIAL 337 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHH
Confidence 9999999999888 788899999999999999999999887664 46788899999
Q ss_pred HccCCHHHHHHHHHhCC
Q 040338 328 GLSGLLGEAKKLIDEMP 344 (385)
Q Consensus 328 ~~~g~~~~A~~~~~~m~ 344 (385)
...|+.+.+.++.++-.
T Consensus 338 ~~~g~~~~a~~~~~~~l 354 (365)
T 4eqf_A 338 SLMDQPELFQAANLGDL 354 (365)
T ss_dssp HHHTCHHHHHHHHTTCC
T ss_pred HHcCcHHHHHHHHHhhH
Confidence 99999999999887643
No 24
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.69 E-value=3.4e-16 Score=138.88 Aligned_cols=251 Identities=8% Similarity=0.006 Sum_probs=112.6
Q ss_pred cCCChHHHHHHHHHHHHcccchhhHHh---------hhhhHHHHHhhhCCCChhhHHHHHHHHHhhhccCChHHHHHHHH
Q 040338 6 SLKSLPIARKIHAQLISTCLISSIFLQ---------LIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHG 76 (385)
Q Consensus 6 ~~~~~~~a~~~~~~~~~~~~~~~~~~~---------~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~ 76 (385)
+.|+++.|.+.++++.. |+++.. ++++|.+.|.+ .+|..+|..++.++.. .|++++|..+++
T Consensus 15 ~~~~ld~A~~fae~~~~----~~vWs~La~A~l~~g~~~eAIdsfik--a~D~~~y~~V~~~ae~---~g~~EeAi~yl~ 85 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNE----PAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANT---SGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCC----hHHHHHHHHHHHHcCCHHHHHHHHHc--CCCHHHHHHHHHHHHh---CCCHHHHHHHHH
Confidence 56889999999999944 334333 99999999976 4677799999998655 899999999888
Q ss_pred HHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCc
Q 040338 77 LVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFG 156 (385)
Q Consensus 77 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~ 156 (385)
...+. .+++.+.+.++.+|++.|+++++.++++ .|+..+|+.+...|...|++
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------------------------~pn~~a~~~IGd~~~~~g~y 138 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFIN-------------------------GPNNAHIQQVGDRCYDEKMY 138 (449)
T ss_dssp -------------------------CHHHHTTTTT-------------------------CC----------------CT
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------------------------CCcHHHHHHHHHHHHHcCCH
Confidence 77764 4568889999999999999999988874 36666888888888888888
Q ss_pred hHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCC--------C
Q 040338 157 FETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNG--------I 228 (385)
Q Consensus 157 ~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--------~ 228 (385)
++|..+|..+ ..|..+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++ +
T Consensus 139 eeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L 203 (449)
T 1b89_A 139 DAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI 203 (449)
T ss_dssp TTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT
T ss_pred HHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 8888888866 47888888888888888888888877 36788888888888887555 2
Q ss_pred CchhhHHHHHHHHHHcCCChhHHHHHHHhccc---CChhhHHHHHHHHHhc--CCCCchHHHH-----------------
Q 040338 229 ESSIQIGKALVTMYAEGGSTQKADLAFELMSR---RNMISWMVLISAFSQA--GVLEKPRFFF----------------- 286 (385)
Q Consensus 229 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~--g~~~~a~~~~----------------- 286 (385)
.....-...++..|.+.|++++|..+++.... ..+..|+.|.-.|++- ++..+.++.|
T Consensus 204 ~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~ 283 (449)
T 1b89_A 204 VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAH 283 (449)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTT
T ss_pred HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 22223345688999999999999999987765 3566777777777654 4556666666
Q ss_pred HHHHHHHHhcccCChhhHHHH
Q 040338 287 FFVSLLSGCSHSGPVTKGKHY 307 (385)
Q Consensus 287 ~~~~l~~~~~~~~~~~~a~~~ 307 (385)
.|..+.-.|.+.++++.|...
T Consensus 284 ~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 284 LWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp CHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhhchHHHHHHH
Confidence 677777777888888877653
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.69 E-value=2.1e-15 Score=132.04 Aligned_cols=259 Identities=11% Similarity=-0.023 Sum_probs=199.9
Q ss_pred hhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHH
Q 040338 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLL 129 (385)
Q Consensus 50 ~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~ 129 (385)
..|..+...+.. .|++++|..+++.+.+.. +.+...+..+..++.+.|++++|.+.|+++.+.+
T Consensus 22 ~~~~~~a~~~~~---~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------------ 85 (327)
T 3cv0_A 22 ENPMEEGLSMLK---LANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD------------ 85 (327)
T ss_dssp SCHHHHHHHHHH---TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHH---hccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------------
Confidence 445555666555 899999999999999875 3477888999999999999999999999886554
Q ss_pred HHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-HhhHHHH--------------HH-HhcCccCccc
Q 040338 130 IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLS-SMLYATA--------------FS-ARASVYDLEW 193 (385)
Q Consensus 130 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~t~~~l--------------l~-~~~~~~~~~~ 193 (385)
+.+..++..+...+...|++++|...++++.+. .|+ ...+..+ .. .+...|++++
T Consensus 86 -------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (327)
T 3cv0_A 86 -------PKDIAVHAALAVSHTNEHNANAALASLRAWLLS--QPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRE 156 (327)
T ss_dssp -------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--STTTTTC--------------------CCTTSHHHHHH
T ss_pred -------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHH
Confidence 456788999999999999999999999999875 333 2333333 22 4788899999
Q ss_pred hhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc--C-ChhhHHHHH
Q 040338 194 GPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR--R-NMISWMVLI 270 (385)
Q Consensus 194 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li 270 (385)
|.+.++.+.+.... +..++..+...+.+.|++++|...+++..+ | +..++
T Consensus 157 A~~~~~~~~~~~~~-----------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---- 209 (327)
T 3cv0_A 157 CRTLLHAALEMNPN-----------------------DAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLW---- 209 (327)
T ss_dssp HHHHHHHHHHHSTT-----------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH----
T ss_pred HHHHHHHHHhhCCC-----------------------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH----
Confidence 99999999887532 334556777788888899999999998865 2 23333
Q ss_pred HHHHhcCCCCchHHHHHHHHHHHHhcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-C
Q 040338 271 SAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-P 347 (385)
Q Consensus 271 ~~~~~~g~~~~a~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p 347 (385)
..+...+...|++++|...++++.+..+ ...+..+...|.+.|++++|.+.|++.... |
T Consensus 210 ------------------~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 271 (327)
T 3cv0_A 210 ------------------NKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQV 271 (327)
T ss_dssp ------------------HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred ------------------HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 3444555556667777788888777666 777888999999999999999999887653 4
Q ss_pred C-------------cchHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 040338 348 T-------------CVIWGALLGACCSHYNTKLAELVMRNLLQL 378 (385)
Q Consensus 348 ~-------------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 378 (385)
+ ...|..+..+|...|++++|..++++..+.
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 315 (327)
T 3cv0_A 272 GGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEP 315 (327)
T ss_dssp TSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHH
T ss_pred ccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3 668889999999999999999998876543
No 26
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.69 E-value=1.2e-15 Score=131.74 Aligned_cols=241 Identities=10% Similarity=-0.084 Sum_probs=174.4
Q ss_pred HhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhh
Q 040338 98 VKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSML 177 (385)
Q Consensus 98 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t 177 (385)
...|++..|+..+++....++ .+.....-.+..+|...|++++|+..++. .-+|+..+
T Consensus 10 ~~~g~y~~ai~~~~~~~~~~p------------------~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a 67 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPSSP------------------ERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQA 67 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCCSH------------------HHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCc------------------hhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHH
Confidence 346777777777766544332 11123445567788888888888876644 13556777
Q ss_pred HHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHh
Q 040338 178 YATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257 (385)
Q Consensus 178 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 257 (385)
+..+...+...++.++|++.++++...+..|+... .+..+...+...|++++|+..+++
T Consensus 68 ~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~---------------------~~~~la~~~~~~g~~~~Al~~l~~ 126 (291)
T 3mkr_A 68 VRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTT---------------------FLLMAASIYFYDQNPDAALRTLHQ 126 (291)
T ss_dssp HHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHH---------------------HHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHH---------------------HHHHHHHHHHHCCCHHHHHHHHhC
Confidence 77788888888888888888888877664443322 234445566666777777777776
Q ss_pred cccCChhhHHHHHHHHHhcCCCCchHHHH----------HHHHHH----HHhcccCChhhHHHHHHHHHhccc--hhhHH
Q 040338 258 MSRRNMISWMVLISAFSQAGVLEKPRFFF----------FFVSLL----SGCSHSGPVTKGKHYFTAMAKFTY--TCYFV 321 (385)
Q Consensus 258 m~~~~~~~~~~li~~~~~~g~~~~a~~~~----------~~~~l~----~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~ 321 (385)
..+...+..++..|.+.|++++|++.+ +...+. ..+...|++++|..+|+++.+..+ ...++
T Consensus 127 --~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~ 204 (291)
T 3mkr_A 127 --GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLN 204 (291)
T ss_dssp --CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred --CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHH
Confidence 345667777777777777777777776 222222 333456899999999999998877 88889
Q ss_pred HHHHHHHccCCHHHHHHHHHhCCCC-C-CcchHHHHHHHHHhcCChHH-HHHHHHHHHhccccCC
Q 040338 322 CMVDLLGLSGLLGEAKKLIDEMPSK-P-TCVIWGALLGACCSHYNTKL-AELVMRNLLQLDVKVF 383 (385)
Q Consensus 322 ~li~~~~~~g~~~~A~~~~~~m~~~-p-~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~~~~~~ 383 (385)
.+..++.+.|++++|...|++.... | +..++..++..+...|+.++ +.++++++++.+|..+
T Consensus 205 ~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~ 269 (291)
T 3mkr_A 205 GQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHP 269 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCh
Confidence 9999999999999999999997763 4 56789999999999999976 6789999999888754
No 27
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.66 E-value=3.1e-13 Score=125.58 Aligned_cols=318 Identities=9% Similarity=-0.113 Sum_probs=204.2
Q ss_pred hhhhHHHHHhhhC-CCChhhHHHHHHHHHh-hhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHh----cCChhHH
Q 040338 33 LIDDDYRVFCDIG-PRYLFTYNTMINGGVR-CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVK----CGAVDYA 106 (385)
Q Consensus 33 ~~~~A~~~~~~~~-~~~~~~~~~li~~~~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~a 106 (385)
++++|...|++.. ..++..+..|-..+.. .+-.+++++|.+.|++..+.| +...+..|...|.. .++.++|
T Consensus 58 ~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A 134 (490)
T 2xm6_A 58 DLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAES 134 (490)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 5666666665443 2233344433333221 001456666666666666543 44555556666665 5666666
Q ss_pred HHHHHhccCCCccc--------------cccchHHHHHHhcCCC-CCCcchHHHHHHHHHh----CCCchHHHHHHHHHH
Q 040338 107 ESAFLRMLNPSLFC--------------WKFGIIRLLIMFQKMP-ERDLVSWNTMISILTR----HGFGFETLCTFIELW 167 (385)
Q Consensus 107 ~~~~~~m~~~~~~~--------------~~~~~~~a~~~~~~~~-~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~ 167 (385)
.+.|++..+.+... ..++.++|.+.|.+.. ..+...+..|...|.. .+++++|+.+|++..
T Consensus 135 ~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~ 214 (490)
T 2xm6_A 135 VKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSA 214 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH
Confidence 66666654432100 0022222222222211 1234445555555554 555666666666555
Q ss_pred HCCCCCCHhhHHHHHHHhcC----ccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHH
Q 040338 168 NHGFGLSSMLYATAFSARAS----VYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYA 243 (385)
Q Consensus 168 ~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~ 243 (385)
+.| +...+..+...+.. .++.++|...++...+.| +...+..+...|.
T Consensus 215 ~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-------------------------~~~a~~~lg~~y~ 266 (490)
T 2xm6_A 215 TSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG-------------------------NSIAQFRLGYILE 266 (490)
T ss_dssp HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT-------------------------CHHHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-------------------------CHHHHHHHHHHHH
Confidence 543 23333344444432 455555665555555443 2334455556666
Q ss_pred c----CCChhHHHHHHHhcccC-ChhhHHHHHHHHHhc-----CCCCchHHHH----------HHHHHHHHhcccC---C
Q 040338 244 E----GGSTQKADLAFELMSRR-NMISWMVLISAFSQA-----GVLEKPRFFF----------FFVSLLSGCSHSG---P 300 (385)
Q Consensus 244 ~----~g~~~~A~~~~~~m~~~-~~~~~~~li~~~~~~-----g~~~~a~~~~----------~~~~l~~~~~~~~---~ 300 (385)
. .++.++|+..|++..+. +...+..+...|... +++++|+..+ .+..+...|...| +
T Consensus 267 ~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g~~~~ 346 (490)
T 2xm6_A 267 QGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLGSEEE 346 (490)
T ss_dssp HTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccc
Confidence 6 78999999999988764 667778888888877 8888999888 6666777776655 8
Q ss_pred hhhHHHHHHHHHhccchhhHHHHHHHHHc----cCCHHHHHHHHHhCCCCCCcchHHHHHHHHHh----cCChHHHHHHH
Q 040338 301 VTKGKHYFTAMAKFTYTCYFVCMVDLLGL----SGLLGEAKKLIDEMPSKPTCVIWGALLGACCS----HYNTKLAELVM 372 (385)
Q Consensus 301 ~~~a~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~----~g~~~~a~~~~ 372 (385)
.++|.+.|++..+.+.+..+..+...|.. .+++++|.+.|++..+..+...+..|...|.. .++.++|...|
T Consensus 347 ~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 426 (490)
T 2xm6_A 347 HKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWF 426 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 89999999999998888888889999988 89999999999998877678888899999998 89999999999
Q ss_pred HHHHhcccc
Q 040338 373 RNLLQLDVK 381 (385)
Q Consensus 373 ~~~~~~~~~ 381 (385)
++..+.+++
T Consensus 427 ~~A~~~~~~ 435 (490)
T 2xm6_A 427 DTASTNDMN 435 (490)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHCCCC
Confidence 999998843
No 28
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.61 E-value=1.6e-14 Score=124.66 Aligned_cols=262 Identities=11% Similarity=0.007 Sum_probs=155.3
Q ss_pred hhhhHHHHHhhhCCCCh----hhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHH
Q 040338 33 LIDDDYRVFCDIGPRYL----FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAES 108 (385)
Q Consensus 33 ~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 108 (385)
++++|...++.....++ ...-.+.+++.. .|+++.|+..++. .-+|+..++..+...+...++.++|++
T Consensus 14 ~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~---~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~~ 86 (291)
T 3mkr_A 14 SYQQCINEAQRVKPSSPERDVERDVFLYRAYLA---QRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIVA 86 (291)
T ss_dssp CHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHH---TTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHHH
T ss_pred HHHHHHHHHHhcccCCchhhHHHHHHHHHHHHH---CCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHHH
Confidence 66666666665443221 122344555555 6777776654433 124455666666667777777777777
Q ss_pred HHHhccCCCccccccchHHHHHHhcCCCCC-CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcC
Q 040338 109 AFLRMLNPSLFCWKFGIIRLLIMFQKMPER-DLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARAS 187 (385)
Q Consensus 109 ~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 187 (385)
.++++...+. .| +...+..+...+.+.|++++|++.+++ +.+...+..+...+.+
T Consensus 87 ~l~~ll~~~~------------------~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~ 142 (291)
T 3mkr_A 87 ELDREMSRSV------------------DVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLK 142 (291)
T ss_dssp HHHHHHHSCC------------------CCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHH
T ss_pred HHHHHHhccc------------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHH
Confidence 7766644332 23 344455555666777777777777665 3455666666667777
Q ss_pred ccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc--C-Chh
Q 040338 188 VYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR--R-NMI 264 (385)
Q Consensus 188 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~ 264 (385)
.|++++|.+.++.+.+.. |+.... ......+..+...|++++|..+|+++.+ | +..
T Consensus 143 ~g~~~~A~~~l~~~~~~~--p~~~~~-------------------~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~ 201 (291)
T 3mkr_A 143 LDRLDLARKELKKMQDQD--EDATLT-------------------QLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLL 201 (291)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHH-------------------HHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHH
T ss_pred CCCHHHHHHHHHHHHhhC--cCcHHH-------------------HHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHH
Confidence 777777777777776654 221100 0112233334445667777777776654 2 333
Q ss_pred hHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHH-HHHHHH
Q 040338 265 SWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGE-AKKLID 341 (385)
Q Consensus 265 ~~~~li~~~~~~g~~~~a~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~-A~~~~~ 341 (385)
. ++.+..++.+.|++++|...++++.+..+ +.++..++..+...|+.++ +.++++
T Consensus 202 ~----------------------~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~ 259 (291)
T 3mkr_A 202 L----------------------LNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLS 259 (291)
T ss_dssp H----------------------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred H----------------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3 44445555566667777888888887777 7788888888888998876 567887
Q ss_pred hCCC-CCCcchHHHHHHHHHhcCChHHHHHH
Q 040338 342 EMPS-KPTCVIWGALLGACCSHYNTKLAELV 371 (385)
Q Consensus 342 ~m~~-~p~~~~~~~li~~~~~~g~~~~a~~~ 371 (385)
++.+ .|+... +.....+.+.++++..-
T Consensus 260 ~~~~~~P~~~~---~~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 260 QLKDAHRSHPF---IKEYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHCTTCHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCChH---HHHHHHHHHHHHHHHHH
Confidence 7765 355432 33344555555555443
No 29
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.58 E-value=2.9e-12 Score=120.24 Aligned_cols=351 Identities=10% Similarity=0.041 Sum_probs=225.6
Q ss_pred cCCChHHHHHHHHHHHHcccc-hhhHHh---------hhhhHHHHHhhhC--CCChhhHHHHHHHHHhhhccCChHHHHH
Q 040338 6 SLKSLPIARKIHAQLISTCLI-SSIFLQ---------LIDDDYRVFCDIG--PRYLFTYNTMINGGVRCLCVGNIKMALH 73 (385)
Q Consensus 6 ~~~~~~~a~~~~~~~~~~~~~-~~~~~~---------~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~~~~a~~ 73 (385)
+.|+++.|+.+++++++.... +..+.. ++++|..+|++.. .|++..|...+.-... ..|+++.|.+
T Consensus 24 ~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~--~~~~~~~a~~ 101 (530)
T 2ooe_A 24 QNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRE--TKGKLPSYKE 101 (530)
T ss_dssp HSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHH--HTTTSTTHHH
T ss_pred HhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHH--HccchhhHHH
Confidence 468899999999999886432 223332 8889999999876 4666666666643221 1466666554
Q ss_pred ----HHHHHHHh-ccCC-CchHHHhHHHHHHh---------cCChhHHHHHHHhccCCCcc----ccc------------
Q 040338 74 ----LHGLVKKF-YFVS-DESIAKSSIDMHVK---------CGAVDYAESAFLRMLNPSLF----CWK------------ 122 (385)
Q Consensus 74 ----~~~~m~~~-g~~~-~~~~~~~li~~~~~---------~g~~~~a~~~~~~m~~~~~~----~~~------------ 122 (385)
+|+...+. |..| +...|...+....+ .|+++.|.++|++..+.... .|.
T Consensus 102 ~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~ 181 (530)
T 2ooe_A 102 KMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIH 181 (530)
T ss_dssp HHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchh
Confidence 77766654 5444 45677777776654 67888999999887662110 111
Q ss_pred ----------cchHHHHHHhc----------CC---CCCC--------cchHHHHHHHHHhC----CCc----hHHHHHH
Q 040338 123 ----------FGIIRLLIMFQ----------KM---PERD--------LVSWNTMISILTRH----GFG----FETLCTF 163 (385)
Q Consensus 123 ----------~~~~~a~~~~~----------~~---~~~~--------~~~~~~li~~~~~~----~~~----~~a~~~~ 163 (385)
+.+..|..++. .. .+|+ ...|...+...... ++. +++..+|
T Consensus 182 ~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y 261 (530)
T 2ooe_A 182 LAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAY 261 (530)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHH
Confidence 12222322221 10 0111 12333333222211 111 2445555
Q ss_pred HHHHHCCCCCCHhhHHHHHHHhcC-------ccCcc-------chhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCC
Q 040338 164 IELWNHGFGLSSMLYATAFSARAS-------VYDLE-------WGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229 (385)
Q Consensus 164 ~~m~~~g~~p~~~t~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~ 229 (385)
++.... .+-+...|......+.+ .|+++ +|..+++..++.- .+
T Consensus 262 ~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~----------------------~p 318 (530)
T 2ooe_A 262 EQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL----------------------LK 318 (530)
T ss_dssp HHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTT----------------------CS
T ss_pred HHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHh----------------------Cc
Confidence 555543 11234444444444432 45554 5555555554311 12
Q ss_pred chhhHHHHHHHHHHcCCChhHHHHHHHhccc--CC-h-hhHHHHHHHHHhcCCCCchHHHH------------HHHHHHH
Q 040338 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSR--RN-M-ISWMVLISAFSQAGVLEKPRFFF------------FFVSLLS 293 (385)
Q Consensus 230 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~-~-~~~~~li~~~~~~g~~~~a~~~~------------~~~~l~~ 293 (385)
.+...|..++..+.+.|++++|..+|++..+ |+ . ..|...+..+.+.|++++|.++| .|.....
T Consensus 319 ~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~ 398 (530)
T 2ooe_A 319 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAAL 398 (530)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHH
Confidence 2355667778888888999999999998875 33 2 47888888888899999999888 2222111
Q ss_pred H-hcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-C-C----cchHHHHHHHHHhcCC
Q 040338 294 G-CSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-P-T----CVIWGALLGACCSHYN 364 (385)
Q Consensus 294 ~-~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p-~----~~~~~~li~~~~~~g~ 364 (385)
. +...|+.++|..+|+...+..+ +..+..++..+.+.|+.++|..+|++.... | + ...|...+......|+
T Consensus 399 ~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~ 478 (530)
T 2ooe_A 399 MEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD 478 (530)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSC
T ss_pred HHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC
Confidence 1 2358999999999999988777 888999999999999999999999998653 2 2 2378888998999999
Q ss_pred hHHHHHHHHHHHhcccc
Q 040338 365 TKLAELVMRNLLQLDVK 381 (385)
Q Consensus 365 ~~~a~~~~~~~~~~~~~ 381 (385)
.+.+..+.+++.+.-|.
T Consensus 479 ~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 479 LASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHCch
Confidence 99999999999887664
No 30
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.58 E-value=1.6e-12 Score=128.69 Aligned_cols=313 Identities=10% Similarity=0.031 Sum_probs=227.1
Q ss_pred hhhhHHHHHhhhC-CCC-----hhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHH
Q 040338 33 LIDDDYRVFCDIG-PRY-----LFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYA 106 (385)
Q Consensus 33 ~~~~A~~~~~~~~-~~~-----~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a 106 (385)
.+.+|..+++++. .|+ ...-+.++.+..+ -+..+..++....... + ...+...+...|.+++|
T Consensus 1000 lp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIk----aD~~Rv~eyI~kLd~~----d---~~eIA~Iai~lglyEEA 1068 (1630)
T 1xi4_A 1000 LPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIK----ADRTRVMEYINRLDNY----D---APDIANIAISNELFEEA 1068 (1630)
T ss_pred CHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHH----hChhhHHHHHHHhhhc----c---HHHHHHHHHhCCCHHHH
Confidence 5566666666554 221 2334445544444 1334444443333311 1 23355667778899999
Q ss_pred HHHHHhccCCCc----cc-cccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHH
Q 040338 107 ESAFLRMLNPSL----FC-WKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181 (385)
Q Consensus 107 ~~~~~~m~~~~~----~~-~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~l 181 (385)
..+|++....+. .. ..+++++|.++..+... ..+|..+..++...|++++|++.|.+. -|...|..+
T Consensus 1069 f~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~--p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eV 1140 (1630)
T 1xi4_A 1069 FAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNE--PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEV 1140 (1630)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHH
Confidence 999988753221 11 11888888888887744 567899999999999999999999663 467788889
Q ss_pred HHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCC------CCchhhHHHHHHHHHHcCCChhHHHHHH
Q 040338 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNG------IESSIQIGKALVTMYAEGGSTQKADLAF 255 (385)
Q Consensus 182 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~ 255 (385)
+.++.+.|++++|.+.+....+.. +++...+.+..+|++.++.+ ..++...|..+...|...|++++|..+|
T Consensus 1141 a~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y 1218 (1630)
T 1xi4_A 1141 VQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLY 1218 (1630)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 999999999999999999887765 44444445888888887666 5566677888999999999999999999
Q ss_pred HhcccCChhhHHHHHHHHHhcCCCCchHHHH-------HHHHHHHHhcccCChhhHHHHHHHHHhccchhhHHHHHHHHH
Q 040338 256 ELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLG 328 (385)
Q Consensus 256 ~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~ 328 (385)
... ..|..+...|++.|++++|++.+ +|..+-.+|...|++..|......+... +..+..++..|.
T Consensus 1219 ~kA-----~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~--~deLeeli~yYe 1291 (1630)
T 1xi4_A 1219 NNV-----SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH--ADELEELINYYQ 1291 (1630)
T ss_pred Hhh-----hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcC--HHHHHHHHHHHH
Confidence 886 48999999999999999999999 8999999999999998888876643222 566778999999
Q ss_pred ccCCHHHHHHHHHhCCCC--CCcchHHHHHHHHHhc--CChHHHHHHHH
Q 040338 329 LSGLLGEAKKLIDEMPSK--PTCVIWGALLGACCSH--YNTKLAELVMR 373 (385)
Q Consensus 329 ~~g~~~~A~~~~~~m~~~--p~~~~~~~li~~~~~~--g~~~~a~~~~~ 373 (385)
+.|.+++|+.+++..... .+...|+-|...|++. ++..++.++|.
T Consensus 1292 ~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1292 DRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999999999999887653 3444666666666653 33444444444
No 31
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.58 E-value=2.4e-12 Score=118.88 Aligned_cols=315 Identities=8% Similarity=-0.090 Sum_probs=200.8
Q ss_pred hhhHHHHHHHHHhhhccCChHHHHHHHHHHHHh-----c--cCC-CchHHHhHHHHHHhcCChhHHHHHHHhccCCCccc
Q 040338 49 LFTYNTMINGGVRCLCVGNIKMALHLHGLVKKF-----Y--FVS-DESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFC 120 (385)
Q Consensus 49 ~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~-----g--~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 120 (385)
...||.|-..+.. .|+.++|++.|++..+. + ..| ...+|+.+..+|...|++++|...+++..+
T Consensus 51 a~~yn~Lg~~~~~---~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~----- 122 (472)
T 4g1t_A 51 ATMCNLLAYLKHL---KGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKH----- 122 (472)
T ss_dssp CHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH-----
Confidence 4568887777666 89999999999987653 1 122 356889999999999999999999876532
Q ss_pred cccchHHHHHHhcCCC---CC-CcchHHHHHHHHHhC--CCchHHHHHHHHHHHCCCCCC-HhhHHHHHHH---hcCccC
Q 040338 121 WKFGIIRLLIMFQKMP---ER-DLVSWNTMISILTRH--GFGFETLCTFIELWNHGFGLS-SMLYATAFSA---RASVYD 190 (385)
Q Consensus 121 ~~~~~~~a~~~~~~~~---~~-~~~~~~~li~~~~~~--~~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~---~~~~~~ 190 (385)
+..... .+ ...+++.+..++... +++++|+..|++..+. .|+ ...+..+..+ +...++
T Consensus 123 ----------i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~ 190 (472)
T 4g1t_A 123 ----------VCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPP 190 (472)
T ss_dssp ----------HHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCC
T ss_pred ----------HhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchH
Confidence 222211 11 234555555555443 4688899999888774 453 3333333333 345567
Q ss_pred ccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCC----C------------CCchhhHHHHHHHHHHcCCChhHHHHH
Q 040338 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCN----G------------IESSIQIGKALVTMYAEGGSTQKADLA 254 (385)
Q Consensus 191 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----~------------~~~~~~~~~~li~~~~~~g~~~~A~~~ 254 (385)
.++|++.++..++..+ .+..++..+...+...+.. + .+.+..++..+...|...|++++|...
T Consensus 191 ~~~al~~~~~al~l~p-~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~ 269 (472)
T 4g1t_A 191 SQNAIDPLRQAIRLNP-DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIEL 269 (472)
T ss_dssp CCCTHHHHHHHHHHCS-SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhhcCC-cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHH
Confidence 7788888888877653 3445555555555554432 2 455667888999999999999999999
Q ss_pred HHhccc--C-ChhhHHHHHHHHHhc-------------------CCCCchHHHH------------HHHHHHHHhcccCC
Q 040338 255 FELMSR--R-NMISWMVLISAFSQA-------------------GVLEKPRFFF------------FFVSLLSGCSHSGP 300 (385)
Q Consensus 255 ~~~m~~--~-~~~~~~~li~~~~~~-------------------g~~~~a~~~~------------~~~~l~~~~~~~~~ 300 (385)
+++..+ | +..++..+...|... +..++|+..+ ++..+...+...|+
T Consensus 270 ~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~ 349 (472)
T 4g1t_A 270 LKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQ 349 (472)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTC
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhcc
Confidence 998875 4 445666665555322 1123344444 67788899999999
Q ss_pred hhhHHHHHHHHHhccc-----hhhHHHHHH-HHHccCCHHHHHHHHHhCCC-------------------------C-CC
Q 040338 301 VTKGKHYFTAMAKFTY-----TCYFVCMVD-LLGLSGLLGEAKKLIDEMPS-------------------------K-PT 348 (385)
Q Consensus 301 ~~~a~~~~~~~~~~~~-----~~~~~~li~-~~~~~g~~~~A~~~~~~m~~-------------------------~-p~ 348 (385)
+++|...|++..+..+ ...+..+.. .+...|+.++|+..|++... . .+
T Consensus 350 ~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~ 429 (472)
T 4g1t_A 350 YEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGAD 429 (472)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-C
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999999887655 222333332 23467899999988876532 1 34
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHhccccCCC
Q 040338 349 CVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384 (385)
Q Consensus 349 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 384 (385)
..+|..+...|...|++++|++.|++.++.++..+.
T Consensus 430 ~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~ 465 (472)
T 4g1t_A 430 SEALHVLAFLQELNEKMQQADEDSERGLESGSLIPS 465 (472)
T ss_dssp TTHHHHHHHHHHHHHHCC------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc
Confidence 678999999999999999999999999998887654
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.58 E-value=5.2e-13 Score=116.75 Aligned_cols=244 Identities=9% Similarity=-0.032 Sum_probs=182.7
Q ss_pred hhhhHHHHHhhhC---CCChhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHH
Q 040338 33 LIDDDYRVFCDIG---PRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109 (385)
Q Consensus 33 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 109 (385)
++++|..+|+++. +.+...|..+...+.. .|++++|...++.+.+.. +.+..++..+...|...|++++|.+.
T Consensus 36 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 111 (327)
T 3cv0_A 36 NLAEAALAFEAVCQAAPEREEAWRSLGLTQAE---NEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAALAS 111 (327)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6777777777654 3456677777777666 899999999999999874 44778899999999999999999999
Q ss_pred HHhccCCCccccccchHHHHHHhcCCCCCCcchHHHH--------------HH-HHHhCCCchHHHHHHHHHHHCCCCCC
Q 040338 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTM--------------IS-ILTRHGFGFETLCTFIELWNHGFGLS 174 (385)
Q Consensus 110 ~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l--------------i~-~~~~~~~~~~a~~~~~~m~~~g~~p~ 174 (385)
++++.+.+. .+...+..+ .. .+...|++++|...++++.+.. +.+
T Consensus 112 ~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 171 (327)
T 3cv0_A 112 LRAWLLSQP-------------------QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PND 171 (327)
T ss_dssp HHHHHHTST-------------------TTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTC
T ss_pred HHHHHHhCC-------------------ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCC
Confidence 998865542 222333332 22 3777899999999999998763 336
Q ss_pred HhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHH
Q 040338 175 SMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLA 254 (385)
Q Consensus 175 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 254 (385)
...+..+...+...|++++|.+.++.+.+..+ .+..++..+...+...|++++|...
T Consensus 172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-----------------------~~~~~~~~l~~~~~~~~~~~~A~~~ 228 (327)
T 3cv0_A 172 AQLHASLGVLYNLSNNYDSAAANLRRAVELRP-----------------------DDAQLWNKLGATLANGNRPQEALDA 228 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------------TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-----------------------CcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 78888999999999999999999999988743 2334567778888888999999999
Q ss_pred HHhccc--C-ChhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcccCChhhHHHHHHHHHhccc--------------h
Q 040338 255 FELMSR--R-NMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--------------T 317 (385)
Q Consensus 255 ~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------------~ 317 (385)
|++..+ | +..++..+...|...| ++++|.+.++++.+..+ .
T Consensus 229 ~~~a~~~~~~~~~~~~~l~~~~~~~g----------------------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 286 (327)
T 3cv0_A 229 YNRALDINPGYVRVMYNMAVSYSNMS----------------------QYDLAAKQLVRAIYMQVGGTTPTGEASREATR 286 (327)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHHHHTTSCC-----CCTHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHhc----------------------cHHHHHHHHHHHHHhCCccccccccchhhcCH
Confidence 998865 3 3445555555555554 55555555555544332 4
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHhCCC
Q 040338 318 CYFVCMVDLLGLSGLLGEAKKLIDEMPS 345 (385)
Q Consensus 318 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 345 (385)
..+..+..++.+.|++++|..++++..+
T Consensus 287 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 287 SMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 5677889999999999999999987654
No 33
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.57 E-value=4.1e-12 Score=118.01 Aligned_cols=314 Identities=11% Similarity=-0.076 Sum_probs=219.7
Q ss_pred HHHHHhhhC-CCChhhHHHHHHHHHh-hhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHh----cCChhHHHHHH
Q 040338 37 DYRVFCDIG-PRYLFTYNTMINGGVR-CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVK----CGAVDYAESAF 110 (385)
Q Consensus 37 A~~~~~~~~-~~~~~~~~~li~~~~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~ 110 (385)
+...+.... ..++..+..+-..|.. ....+++++|...|+...+.| +...+..|...|.. .++.++|.+.|
T Consensus 26 ~~~~~~~~a~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 102 (490)
T 2xm6_A 26 NLEQLKQKAESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWY 102 (490)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 344444333 4466665555555432 112799999999999998864 67788889999998 89999999999
Q ss_pred HhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHh----CCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhc
Q 040338 111 LRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTR----HGFGFETLCTFIELWNHGFGLSSMLYATAFSARA 186 (385)
Q Consensus 111 ~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 186 (385)
++..+.+ +...+..|-..|.. .+++++|+.+|++..+.| +...+..+...|.
T Consensus 103 ~~a~~~~---------------------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~ 158 (490)
T 2xm6_A 103 KKAALKG---------------------LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYF 158 (490)
T ss_dssp HHHHHTT---------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHHCC---------------------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 9986543 23344445555555 555666666666555543 2333334444443
Q ss_pred C----ccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHh----cCCCC----------CCchhhHHHHHHHHHHc----
Q 040338 187 S----VYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLK----CGCNG----------IESSIQIGKALVTMYAE---- 244 (385)
Q Consensus 187 ~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~----------~~~~~~~~~~li~~~~~---- 244 (385)
. .++.++|.+.|+...+.| +...+..|-..|.. .++.+ ...+...+..+...|..
T Consensus 159 ~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~ 235 (490)
T 2xm6_A 159 EGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGV 235 (490)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSS
T ss_pred cCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCC
Confidence 3 455555666665555543 33444444444443 12111 11234455666777765
Q ss_pred CCChhHHHHHHHhccc-CChhhHHHHHHHHHh----cCCCCchHHHH----------HHHHHHHHhccc-----CChhhH
Q 040338 245 GGSTQKADLAFELMSR-RNMISWMVLISAFSQ----AGVLEKPRFFF----------FFVSLLSGCSHS-----GPVTKG 304 (385)
Q Consensus 245 ~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~----~g~~~~a~~~~----------~~~~l~~~~~~~-----~~~~~a 304 (385)
.++.++|...|++..+ .+...+..+...|.. .+++++|+..+ .+..+...|... ++.++|
T Consensus 236 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A 315 (490)
T 2xm6_A 236 TQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQA 315 (490)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHH
Confidence 7899999999998876 466777788888877 78889999888 566677777766 899999
Q ss_pred HHHHHHHHhccchhhHHHHHHHHHccC---CHHHHHHHHHhCCCCCCcchHHHHHHHHHh----cCChHHHHHHHHHHHh
Q 040338 305 KHYFTAMAKFTYTCYFVCMVDLLGLSG---LLGEAKKLIDEMPSKPTCVIWGALLGACCS----HYNTKLAELVMRNLLQ 377 (385)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~ 377 (385)
...+++..+.+....+..+...|...| ++++|.+.|++..+..+...+..|...|.. .+++++|..++++..+
T Consensus 316 ~~~~~~a~~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~ 395 (490)
T 2xm6_A 316 ISWYTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE 395 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Confidence 999999999888777888888888766 789999999988877788889999999998 8999999999999988
Q ss_pred ccc
Q 040338 378 LDV 380 (385)
Q Consensus 378 ~~~ 380 (385)
.+.
T Consensus 396 ~~~ 398 (490)
T 2xm6_A 396 QGL 398 (490)
T ss_dssp TTC
T ss_pred CCC
Confidence 764
No 34
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.55 E-value=2.9e-12 Score=126.90 Aligned_cols=339 Identities=12% Similarity=0.001 Sum_probs=243.5
Q ss_pred cccccCCChHHHHHHHHHHHHcccchhhHHh---------------hhhhHHHHHhhhCCCChhhHHHHHHHHHhhhccC
Q 040338 2 KACGSLKSLPIARKIHAQLISTCLISSIFLQ---------------LIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVG 66 (385)
Q Consensus 2 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---------------~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 66 (385)
++|...|.+.+|..+++.++-. |+.|.. +........++....+ ..-+-.. |...|
T Consensus 993 Kaf~~aglp~EaieLLEKivl~---~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d---~~eIA~I---ai~lg 1063 (1630)
T 1xi4_A 993 KAFMTADLPNELIELLEKIVLD---NSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYD---APDIANI---AISNE 1063 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHHHcC---CCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhcc---HHHHHHH---HHhCC
Confidence 4567789999999999999843 332222 2333333333322222 2223333 23378
Q ss_pred ChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccc-------cchHHHHHHhcCCCCCC
Q 040338 67 NIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWK-------FGIIRLLIMFQKMPERD 139 (385)
Q Consensus 67 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-------~~~~~a~~~~~~~~~~~ 139 (385)
.+++|..+|++.. ......+.++. ..+++++|.++.++...+.....- |.+++|.+.|.+- .|
T Consensus 1064 lyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD 1133 (1630)
T 1xi4_A 1064 LFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DD 1133 (1630)
T ss_pred CHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CC
Confidence 8888888887752 12222233332 667888888888877554332111 8888888888663 67
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHH
Q 040338 140 LVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDM 219 (385)
Q Consensus 140 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 219 (385)
...|..++.++.+.|++++|.+.|....+.. ++....+.+..+|++.+++++...+ ++ .++...+..+-..
T Consensus 1134 ~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f----I~---~~n~ad~~~iGd~ 1204 (1630)
T 1xi4_A 1134 PSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF----IN---GPNNAHIQQVGDR 1204 (1630)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH----Hh---CCCHHHHHHHHHH
Confidence 7788999999999999999999999877754 4433344588899999888754433 22 3455666678888
Q ss_pred HHhcCCCC----CCchhhHHHHHHHHHHcCCChhHHHHHHHhcccCChhhHHHHHHHHHhcCCCCchHHHH--------H
Q 040338 220 YLKCGCNG----IESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF--------F 287 (385)
Q Consensus 220 ~~~~g~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~--------~ 287 (385)
|...|+++ .--....|..+...|.+.|++++|.+.+++. .+..+|..+-.+|...|++..|.... .
T Consensus 1205 le~eg~YeeA~~~Y~kA~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~de 1282 (1630)
T 1xi4_A 1205 CYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE 1282 (1630)
T ss_pred HHhcCCHHHHHHHHHhhhHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHH
Confidence 88888766 2233468999999999999999999999977 56689999999999999999888776 6
Q ss_pred HHHHHHHhcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHc--cCCHHHHHHHHHhCCCC-------CCcchHHHHH
Q 040338 288 FVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGL--SGLLGEAKKLIDEMPSK-------PTCVIWGALL 356 (385)
Q Consensus 288 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~-------p~~~~~~~li 356 (385)
+..++..|.+.|.+++|+.+++....... ...|+-+...|++ -+++-++.++|..-..- -+...|..++
T Consensus 1283 Leeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv 1362 (1630)
T 1xi4_A 1283 LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELV 1362 (1630)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHH
Confidence 77889999999999999999998877666 6677767777766 45677788887755542 3456799999
Q ss_pred HHHHhcCChHHHHH
Q 040338 357 GACCSHYNTKLAEL 370 (385)
Q Consensus 357 ~~~~~~g~~~~a~~ 370 (385)
-.|.+.|+++.|..
T Consensus 1363 ~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1363 FLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHhcccHHHHHH
Confidence 99999999999883
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.54 E-value=8.6e-14 Score=117.39 Aligned_cols=213 Identities=11% Similarity=-0.100 Sum_probs=179.6
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCC--CchHHHHHHH
Q 040338 140 LVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPS--LDVFVGSGLI 217 (385)
Q Consensus 140 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li 217 (385)
...|..+...+...|++++|+..|++..+.. .+...+..+..++...|++++|.+.++...+.... ++..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------ 76 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK------ 76 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH------
Confidence 3567888899999999999999999999886 78889999999999999999999999998875421 1110
Q ss_pred HHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc--CChhhHHHHHHHHHhcCCCCchHHHH---------
Q 040338 218 DMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR--RNMISWMVLISAFSQAGVLEKPRFFF--------- 286 (385)
Q Consensus 218 ~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~a~~~~--------- 286 (385)
....++..+...+...|++++|...|++..+ |+. ..+...|++++|+..+
T Consensus 77 ------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~ 137 (258)
T 3uq3_A 77 ------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKELKKAEAEAYVNPE 137 (258)
T ss_dssp ------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred ------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHHHHHHHHHHHcCcc
Confidence 1135667788888899999999999998876 442 3455566677777776
Q ss_pred ---HHHHHHHHhcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-C-CcchHHHHHHHH
Q 040338 287 ---FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-P-TCVIWGALLGAC 359 (385)
Q Consensus 287 ---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p-~~~~~~~li~~~ 359 (385)
.+..+...+...|++++|...++++.+..+ ...+..+...|.+.|++++|.+.|++..+. | +...|..+...|
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 217 (258)
T 3uq3_A 138 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 217 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 788899999999999999999999998877 788889999999999999999999988763 4 467899999999
Q ss_pred HhcCChHHHHHHHHHHHhcc
Q 040338 360 CSHYNTKLAELVMRNLLQLD 379 (385)
Q Consensus 360 ~~~g~~~~a~~~~~~~~~~~ 379 (385)
...|++++|...+++..+..
T Consensus 218 ~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 218 IAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHhC
Confidence 99999999999999999887
No 36
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.53 E-value=6.4e-13 Score=113.16 Aligned_cols=232 Identities=9% Similarity=-0.043 Sum_probs=159.6
Q ss_pred chHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHH
Q 040338 87 ESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIEL 166 (385)
Q Consensus 87 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 166 (385)
...+......+...|++++|+..|++..+.+ +.+...+..+..++...|++++|+..+++.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-------------------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 63 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-------------------YNSPYIYNRRAVCYYELAKYDLAQKDIETY 63 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-------------------CCCSTTHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------------------CCcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3445556677778888888888887776554 345557777888888888888888888888
Q ss_pred HHCCCCCC--HhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHc
Q 040338 167 WNHGFGLS--SMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAE 244 (385)
Q Consensus 167 ~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~ 244 (385)
.+.+..|+ ...|..+...+...|++++|++.++...+..+. +..++..+...|..
T Consensus 64 ~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~-----------------------~~~~~~~l~~~~~~ 120 (272)
T 3u4t_A 64 FSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT-----------------------RLDMYGQIGSYFYN 120 (272)
T ss_dssp HTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-----------------------CTHHHHHHHHHHHH
T ss_pred HhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc-----------------------cHHHHHHHHHHHHH
Confidence 77432222 233677777888888888888888888776431 23345667777777
Q ss_pred CCChhHHHHHHHhcccC---ChhhHHHHH-HHHHhcCCCCchHHHHHHHHHHHHhcccCChhhHHHHHHHHHhccc--hh
Q 040338 245 GGSTQKADLAFELMSRR---NMISWMVLI-SAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TC 318 (385)
Q Consensus 245 ~g~~~~A~~~~~~m~~~---~~~~~~~li-~~~~~~g~~~~a~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~ 318 (385)
.|++++|+..|++..+. +...+..+. ..|. .+++++|...++++.+..+ ..
T Consensus 121 ~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-----------------------~~~~~~A~~~~~~a~~~~p~~~~ 177 (272)
T 3u4t_A 121 KGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY-----------------------NKEYVKADSSFVKVLELKPNIYI 177 (272)
T ss_dssp TTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH-----------------------TTCHHHHHHHHHHHHHHSTTCHH
T ss_pred ccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHhCccchH
Confidence 88888888888887752 333343333 2222 2267777777777777666 55
Q ss_pred hHHHHHHHHHccCC---HHHHHHHHHhCCCC----CCc------chHHHHHHHHHhcCChHHHHHHHHHHHhccccCC
Q 040338 319 YFVCMVDLLGLSGL---LGEAKKLIDEMPSK----PTC------VIWGALLGACCSHYNTKLAELVMRNLLQLDVKVF 383 (385)
Q Consensus 319 ~~~~li~~~~~~g~---~~~A~~~~~~m~~~----p~~------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 383 (385)
.+..+...+...|+ +++|...+++..+. |+. .+|..+...|...|++++|...+++..+.+|.++
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 255 (272)
T 3u4t_A 178 GYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNK 255 (272)
T ss_dssp HHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHH
Confidence 66667777777777 66677777666542 442 4677788888888999999999998888887653
No 37
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.52 E-value=9.8e-12 Score=116.66 Aligned_cols=327 Identities=13% Similarity=0.028 Sum_probs=209.2
Q ss_pred ChhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCc--cccc---
Q 040338 48 YLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSL--FCWK--- 122 (385)
Q Consensus 48 ~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~~~~--- 122 (385)
|...|..++. +.. .|++++|..+|+.+.+. .+.+...|..++..+.+.|++++|..+|++.....+ ..|.
T Consensus 12 ~~~~w~~l~~-~~~---~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~ 86 (530)
T 2ooe_A 12 DLDAWSILIR-EAQ---NQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYL 86 (530)
T ss_dssp CHHHHHHHHH-HHH---SSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHH
T ss_pred CHHHHHHHHH-HHH---hCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 4556666665 233 56666666666666654 233455666666666666666666666666654332 1111
Q ss_pred -------cchHHHHH----HhcCC------CCCCcchHHHHHHHHHh---------CCCchHHHHHHHHHHHCCCCCC--
Q 040338 123 -------FGIIRLLI----MFQKM------PERDLVSWNTMISILTR---------HGFGFETLCTFIELWNHGFGLS-- 174 (385)
Q Consensus 123 -------~~~~~a~~----~~~~~------~~~~~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~g~~p~-- 174 (385)
|+.+.|.+ +|++. ..++...|...+....+ .|+++.|..+|++..+. |+
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~~ 163 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMIN 163 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCTT
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhhh
Confidence 22222221 33221 22456678777776654 67889999999998772 33
Q ss_pred -HhhHHHHHHH---h----------cCccCccchhhHHHHHH------HhC---CCCc--------hHHHHHHHHHHHhc
Q 040338 175 -SMLYATAFSA---R----------ASVYDLEWGPHLHSRVV------HME---PSLD--------VFVGSGLIDMYLKC 223 (385)
Q Consensus 175 -~~t~~~ll~~---~----------~~~~~~~~a~~~~~~~~------~~~---~~~~--------~~~~~~li~~~~~~ 223 (385)
...|...... + .+.+++..|..++..+. +.. +.|+ ...|...+......
T Consensus 164 ~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~ 243 (530)
T 2ooe_A 164 IEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSN 243 (530)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcC
Confidence 2333322221 1 12345556666555522 111 2332 23454444332221
Q ss_pred C----CCC----------------CCchhhHHHHHHHHHHc-------CCChh-------HHHHHHHhccc---C-Chhh
Q 040338 224 G----CNG----------------IESSIQIGKALVTMYAE-------GGSTQ-------KADLAFELMSR---R-NMIS 265 (385)
Q Consensus 224 g----~~~----------------~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~---~-~~~~ 265 (385)
+ +.. .+.+...|......+.+ .|+++ +|..+|++..+ | +...
T Consensus 244 ~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l 323 (530)
T 2ooe_A 244 PLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLL 323 (530)
T ss_dssp SSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHH
T ss_pred CccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHH
Confidence 1 110 23356677777777765 79987 89999998864 4 5678
Q ss_pred HHHHHHHHHhcCCCCchHHHH-------------HHHHHHHHhcccCChhhHHHHHHHHHhccc--hhhHHHHHHH-HHc
Q 040338 266 WMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDL-LGL 329 (385)
Q Consensus 266 ~~~li~~~~~~g~~~~a~~~~-------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~-~~~ 329 (385)
|..++..+.+.|++++|..++ .|...+..+.+.|++++|..+|++..+.++ ...+...... +..
T Consensus 324 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~ 403 (530)
T 2ooe_A 324 YFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYC 403 (530)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 888999999999999999988 577777777889999999999999988766 2333222222 336
Q ss_pred cCCHHHHHHHHHhCCCC-C-CcchHHHHHHHHHhcCChHHHHHHHHHHHhccccC
Q 040338 330 SGLLGEAKKLIDEMPSK-P-TCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKV 382 (385)
Q Consensus 330 ~g~~~~A~~~~~~m~~~-p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 382 (385)
.|+.++|.++|+...+. | +...|..++..+.+.|+.++|..+|++.+..++.+
T Consensus 404 ~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~ 458 (530)
T 2ooe_A 404 SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 458 (530)
T ss_dssp TCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSC
T ss_pred cCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCC
Confidence 89999999999988764 5 56789999999999999999999999999876543
No 38
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.50 E-value=2.2e-12 Score=110.07 Aligned_cols=217 Identities=10% Similarity=-0.100 Sum_probs=180.0
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcC----ccCccchhhHHHHHHHhCCCCchHHH
Q 040338 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARAS----VYDLEWGPHLHSRVVHMEPSLDVFVG 213 (385)
Q Consensus 138 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 213 (385)
.+..++..+...+...|++++|+..|++..+. -+...+..+...+.. .+++++|...+++..+.+ +..
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~-- 75 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSN-- 75 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH--
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHH--
Confidence 35667788888899999999999999998873 345667777778888 899999999999988775 233
Q ss_pred HHHHHHHHhcCCCCCCchhhHHHHHHHHHHc----CCChhHHHHHHHhcccC-ChhhHHHHHHHHHh----cCCCCchHH
Q 040338 214 SGLIDMYLKCGCNGIESSIQIGKALVTMYAE----GGSTQKADLAFELMSRR-NMISWMVLISAFSQ----AGVLEKPRF 284 (385)
Q Consensus 214 ~~li~~~~~~g~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~-~~~~~~~li~~~~~----~g~~~~a~~ 284 (385)
.+..+...|.. .+++++|+..|++..+. +...+..+...|.. .+++++|+.
T Consensus 76 --------------------a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~ 135 (273)
T 1ouv_A 76 --------------------GCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVE 135 (273)
T ss_dssp --------------------HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred --------------------HHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHH
Confidence 33555666666 78999999999887664 66788888888888 889999998
Q ss_pred HH----------HHHHHHHHhcc----cCChhhHHHHHHHHHhccchhhHHHHHHHHHc----cCCHHHHHHHHHhCCCC
Q 040338 285 FF----------FFVSLLSGCSH----SGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGL----SGLLGEAKKLIDEMPSK 346 (385)
Q Consensus 285 ~~----------~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~ 346 (385)
.+ ++..+...|.. .+++++|...+++..+.+....+..+...|.. .+++++|.+.|++..+.
T Consensus 136 ~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~ 215 (273)
T 1ouv_A 136 YFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL 215 (273)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC
Confidence 88 66777777777 89999999999999988888888889999999 99999999999988776
Q ss_pred CCcchHHHHHHHHHh----cCChHHHHHHHHHHHhccccC
Q 040338 347 PTCVIWGALLGACCS----HYNTKLAELVMRNLLQLDVKV 382 (385)
Q Consensus 347 p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~ 382 (385)
.+...+..+...|.. .+++++|...+++..+.++.+
T Consensus 216 ~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 216 ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred CCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 557788889999999 999999999999999988764
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.49 E-value=1.9e-12 Score=109.06 Aligned_cols=221 Identities=9% Similarity=-0.034 Sum_probs=168.9
Q ss_pred hhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHH
Q 040338 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLL 129 (385)
Q Consensus 50 ~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~ 129 (385)
..|..+-..+.. .|++++|...++...+.. .+..++..+..+|...|++++|.+.|++..+.+.
T Consensus 6 ~~~~~~g~~~~~---~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~----------- 69 (258)
T 3uq3_A 6 DKEKAEGNKFYK---ARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGR----------- 69 (258)
T ss_dssp HHHHHHHHHHHH---TTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHH---hccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCc-----------
Confidence 355666666555 899999999999999987 7899999999999999999999999988755332
Q ss_pred HHhcCCCCCC----cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhC
Q 040338 130 IMFQKMPERD----LVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHME 205 (385)
Q Consensus 130 ~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 205 (385)
.. .++ ..+|..+...+...|++++|...|++..+. .|+. ..+.+.|++++|...++.+....
T Consensus 70 ----~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~ 135 (258)
T 3uq3_A 70 ----EM-RADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN 135 (258)
T ss_dssp ----HT-TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC
T ss_pred ----cc-ccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC
Confidence 00 112 578889999999999999999999999885 4553 34556688999999999988753
Q ss_pred CCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc--C-ChhhHHHHHHHHHhcCCCCch
Q 040338 206 PSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR--R-NMISWMVLISAFSQAGVLEKP 282 (385)
Q Consensus 206 ~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a 282 (385)
+ .+...+..+...+...|++++|...|++..+ | +...+..
T Consensus 136 ~-----------------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~-------------- 178 (258)
T 3uq3_A 136 P-----------------------EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSN-------------- 178 (258)
T ss_dssp H-----------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH--------------
T ss_pred c-----------------------chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHH--------------
Confidence 2 2334567778888889999999999998875 2 3334444
Q ss_pred HHHHHHHHHHHHhcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCC
Q 040338 283 RFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPS 345 (385)
Q Consensus 283 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 345 (385)
+...+...|++++|...+++..+..+ ...+..+...+.+.|++++|.+.|++..+
T Consensus 179 --------l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 179 --------RAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp --------HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------HHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 44445555666677777777766666 67777788888888888888888877654
No 40
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.48 E-value=5e-12 Score=112.80 Aligned_cols=234 Identities=8% Similarity=-0.002 Sum_probs=187.0
Q ss_pred chHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCC-chHHHHHHHH
Q 040338 87 ESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGF-GFETLCTFIE 165 (385)
Q Consensus 87 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~ 165 (385)
...|..+..++.+.|++++|++.|++..+.+ +.+..+|+.+..++...|+ +++|+..|++
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-------------------P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~ 157 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-------------------AANYTVWHFRRVLLKSLQKDLHEEMNYITA 157 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-------------------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-------------------ccCHHHHHHHHHHHHHcccCHHHHHHHHHH
Confidence 4567788888889999999999999887655 3567889999999999997 9999999999
Q ss_pred HHHCCCCC-CHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHc
Q 040338 166 LWNHGFGL-SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAE 244 (385)
Q Consensus 166 m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~ 244 (385)
..+. .| +...|..+-.++...|++++|+..++.+++..+ .+...|..+..++.+
T Consensus 158 al~l--~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP-----------------------~~~~a~~~lg~~~~~ 212 (382)
T 2h6f_A 158 IIEE--QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDA-----------------------KNYHAWQHRQWVIQE 212 (382)
T ss_dssp HHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-----------------------TCHHHHHHHHHHHHH
T ss_pred HHHH--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-----------------------cCHHHHHHHHHHHHH
Confidence 9885 44 677888888899999999999999999998754 244556777778888
Q ss_pred CCChhHHHHHHHhccc--C-ChhhHHHHHHHHHh-cCCCCchHHHHHHHHHHHHhcccCChhhHHHHHHHHHhccc--hh
Q 040338 245 GGSTQKADLAFELMSR--R-NMISWMVLISAFSQ-AGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TC 318 (385)
Q Consensus 245 ~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~-~g~~~~a~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~ 318 (385)
.|++++|+..|+++.+ | +...|+.+..++.. .|..++|+ .+.+...+++.....+ ..
T Consensus 213 ~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~-----------------~~~el~~~~~Al~l~P~~~~ 275 (382)
T 2h6f_A 213 FKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAV-----------------LEREVQYTLEMIKLVPHNES 275 (382)
T ss_dssp HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHH-----------------HHHHHHHHHHHHHHSTTCHH
T ss_pred cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHH-----------------HHHHHHHHHHHHHHCCCCHH
Confidence 8899999999999876 3 66788888888888 55556663 3444577777777776 77
Q ss_pred hHHHHHHHHHccC--CHHHHHHHHHhCCCCC-CcchHHHHHHHHHhcC--------C-hHHHHHHHHHH-Hhcccc
Q 040338 319 YFVCMVDLLGLSG--LLGEAKKLIDEMPSKP-TCVIWGALLGACCSHY--------N-TKLAELVMRNL-LQLDVK 381 (385)
Q Consensus 319 ~~~~li~~~~~~g--~~~~A~~~~~~m~~~p-~~~~~~~li~~~~~~g--------~-~~~a~~~~~~~-~~~~~~ 381 (385)
.|..+...+...| ++++|.+.++++...| +...+..+...|.+.| + .++|+++++++ .+.+|.
T Consensus 276 a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~ 351 (382)
T 2h6f_A 276 AWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTI 351 (382)
T ss_dssp HHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCch
Confidence 8888888888888 6899999999883334 4567888888888874 2 58999999999 777764
No 41
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.47 E-value=5.2e-13 Score=120.95 Aligned_cols=256 Identities=10% Similarity=-0.061 Sum_probs=196.8
Q ss_pred hHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCc----chHHHHHHHHHhCCCchHHHHHH
Q 040338 88 SIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDL----VSWNTMISILTRHGFGFETLCTF 163 (385)
Q Consensus 88 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~ 163 (385)
..+..+...+...|++++|...|++..+.+ +.+. ..|..+...|...|++++|...+
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-------------------~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 109 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG-------------------TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYH 109 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-------------------ccChhHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 345556678888999999999998876543 2232 46888889999999999999999
Q ss_pred HHHHHC----CCCC-CHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHH
Q 040338 164 IELWNH----GFGL-SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKAL 238 (385)
Q Consensus 164 ~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~l 238 (385)
++..+. +-.| ...++..+...+...|++++|...+++..+....... ......++..+
T Consensus 110 ~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------------~~~~~~~~~~l 172 (411)
T 4a1s_A 110 KHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGD-----------------RLSEGRALYNL 172 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-----------------HHHHHHHHHHH
T ss_pred HHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc-----------------hHHHHHHHHHH
Confidence 987653 2223 4567778888999999999999999988764211000 01123355667
Q ss_pred HHHHHcCCC-----------------hhHHHHHHHhccc-----C----ChhhHHHHHHHHHhcCCCCchHHHH------
Q 040338 239 VTMYAEGGS-----------------TQKADLAFELMSR-----R----NMISWMVLISAFSQAGVLEKPRFFF------ 286 (385)
Q Consensus 239 i~~~~~~g~-----------------~~~A~~~~~~m~~-----~----~~~~~~~li~~~~~~g~~~~a~~~~------ 286 (385)
...|...|+ +++|+..+++..+ . ...++..+...|...|++++|+..+
T Consensus 173 ~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 252 (411)
T 4a1s_A 173 GNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRI 252 (411)
T ss_dssp HHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 777777778 8888888876543 1 2347778888899999999998888
Q ss_pred ------------HHHHHHHHhcccCChhhHHHHHHHHHhccc--------hhhHHHHHHHHHccCCHHHHHHHHHhCCCC
Q 040338 287 ------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--------TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK 346 (385)
Q Consensus 287 ------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 346 (385)
++..+...+...|++++|...+++...... ...+..+...|...|++++|.+.+++....
T Consensus 253 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 332 (411)
T 4a1s_A 253 AREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAI 332 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 678888999999999999999998876544 567788899999999999999999887652
Q ss_pred ----CC----cchHHHHHHHHHhcCChHHHHHHHHHHHhcc
Q 040338 347 ----PT----CVIWGALLGACCSHYNTKLAELVMRNLLQLD 379 (385)
Q Consensus 347 ----p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 379 (385)
++ ..++..+...|...|++++|...+++..+..
T Consensus 333 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 333 AQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 22 3478889999999999999999999987643
No 42
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.46 E-value=2.1e-12 Score=106.35 Aligned_cols=191 Identities=14% Similarity=-0.013 Sum_probs=149.5
Q ss_pred CChhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchH
Q 040338 47 RYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGII 126 (385)
Q Consensus 47 ~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 126 (385)
++...+..+-..+.. .|++++|...++...+.. +.+...+..+..++.+.|++++|+..|++..+.+
T Consensus 3 ~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--------- 69 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYA---LGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART--------- 69 (217)
T ss_dssp -CCHHHHHHHHHHHH---TTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------
T ss_pred CcHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------
Confidence 455566777777666 899999999999999875 4477889999999999999999999999887655
Q ss_pred HHHHHhcCCCCCCcchHHHHHHHHHhC-----------CCchHHHHHHHHHHHCCCCC-CHhhHHHHHHHhcCccCccch
Q 040338 127 RLLIMFQKMPERDLVSWNTMISILTRH-----------GFGFETLCTFIELWNHGFGL-SSMLYATAFSARASVYDLEWG 194 (385)
Q Consensus 127 ~a~~~~~~~~~~~~~~~~~li~~~~~~-----------~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a 194 (385)
+.+...+..+...+.+. |++++|+..|++..+. .| +...+..+..++...|++++|
T Consensus 70 ----------P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A 137 (217)
T 2pl2_A 70 ----------PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKA 137 (217)
T ss_dssp ----------TTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred ----------CCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHH
Confidence 35677899999999999 9999999999999885 45 567788888999999999999
Q ss_pred hhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc--C-ChhhHHHHHH
Q 040338 195 PHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR--R-NMISWMVLIS 271 (385)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~ 271 (385)
+..+++.++.. .+...+ ..+...|...|++++|+..|++..+ | +...+..+..
T Consensus 138 ~~~~~~al~~~--~~~~~~----------------------~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~ 193 (217)
T 2pl2_A 138 EASLKQALALE--DTPEIR----------------------SALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYAS 193 (217)
T ss_dssp HHHHHHHHHHC--CCHHHH----------------------HHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHhcc--cchHHH----------------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 99999999887 444444 5666677777899999999998875 4 5677888888
Q ss_pred HHHhcCCCCchHHHH
Q 040338 272 AFSQAGVLEKPRFFF 286 (385)
Q Consensus 272 ~~~~~g~~~~a~~~~ 286 (385)
.+...|++++|+..+
T Consensus 194 ~~~~~g~~~~A~~~~ 208 (217)
T 2pl2_A 194 ALLLKGKAEEAARAA 208 (217)
T ss_dssp HHTC-----------
T ss_pred HHHHccCHHHHHHHH
Confidence 888888888887654
No 43
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.46 E-value=6.2e-13 Score=113.34 Aligned_cols=240 Identities=8% Similarity=-0.167 Sum_probs=153.3
Q ss_pred cCChHHHHHHHHHHHHhcc---CCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcc
Q 040338 65 VGNIKMALHLHGLVKKFYF---VSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLV 141 (385)
Q Consensus 65 ~~~~~~a~~~~~~m~~~g~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 141 (385)
.|++++|+..++.+.+... +.+..++..+...|...|++++|...|++..+.+ +.+..
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-------------------~~~~~ 78 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-------------------PDMPE 78 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------CCCHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-------------------CCcHH
Confidence 5777888888888777532 1245667777778888888888888887765544 34567
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHH
Q 040338 142 SWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYL 221 (385)
Q Consensus 142 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 221 (385)
+|..+...+...|++++|...|++..+.. +.+...+..+...+.+.|++++|...++.+.+..+. ....
T Consensus 79 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~--~~~~-------- 147 (275)
T 1xnf_A 79 VFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN--DPFR-------- 147 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHH--------
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--ChHH--------
Confidence 77778888888888888888888877642 224667777777788888888888888887776432 1111
Q ss_pred hcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc--CChhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcccC
Q 040338 222 KCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR--RNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSG 299 (385)
Q Consensus 222 ~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~l~~~~~~~~ 299 (385)
...+..+...|++++|...++.... |+...... ++..+...+
T Consensus 148 --------------~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~ 191 (275)
T 1xnf_A 148 --------------SLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWN----------------------IVEFYLGNI 191 (275)
T ss_dssp --------------HHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHH----------------------HHHHHTTSS
T ss_pred --------------HHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHH----------------------HHHHHHHhc
Confidence 1122222344678888888866543 21111111 223333444
Q ss_pred ChhhHHHHHHHHHhccc------hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-CCcchHHHHHHHHHhcCChHHHHHHH
Q 040338 300 PVTKGKHYFTAMAKFTY------TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-PTCVIWGALLGACCSHYNTKLAELVM 372 (385)
Q Consensus 300 ~~~~a~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p~~~~~~~li~~~~~~g~~~~a~~~~ 372 (385)
+.++|...++......+ ...+..+...|.+.|++++|.+.|++.... |+. +.....++...|++++|++.+
T Consensus 192 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 192 SEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT--CHHHHHHHHHHHHHHHC----
T ss_pred CHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 55566666666655444 466777888888888899998888888764 432 334455677778888887765
No 44
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.46 E-value=6e-13 Score=116.54 Aligned_cols=256 Identities=11% Similarity=-0.043 Sum_probs=188.7
Q ss_pred HHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCC----cchHHHHHHHHHhCCCchHHHHHHH
Q 040338 89 IAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERD----LVSWNTMISILTRHGFGFETLCTFI 164 (385)
Q Consensus 89 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~ 164 (385)
.+......+...|++++|...|++..+.+ +.+ ...+..+...+...|++++|...++
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-------------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 67 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-------------------TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHH 67 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-------------------cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34455667778899999999988775533 122 3567788889999999999999988
Q ss_pred HHHHC----CCCC-CHhhHHHHHHHhcCccCccchhhHHHHHHHhCCC-CchHHHHHHHHHHHhcCCCCCCchhhHHHHH
Q 040338 165 ELWNH----GFGL-SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPS-LDVFVGSGLIDMYLKCGCNGIESSIQIGKAL 238 (385)
Q Consensus 165 ~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~~~~~~~~~~l 238 (385)
+..+. +..| ...++..+...+...|++++|...+++..+.... ++.. ....++..+
T Consensus 68 ~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------------------~~~~~~~~l 129 (338)
T 3ro2_A 68 HDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV------------------GEARALYNL 129 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH------------------HHHHHHHHH
T ss_pred HHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCch------------------HHHHHHHHH
Confidence 86543 2222 2556777888888999999999999887764221 1110 112244556
Q ss_pred HHHHHcCCC--------------------hhHHHHHHHhccc-----C----ChhhHHHHHHHHHhcCCCCchHHHH---
Q 040338 239 VTMYAEGGS--------------------TQKADLAFELMSR-----R----NMISWMVLISAFSQAGVLEKPRFFF--- 286 (385)
Q Consensus 239 i~~~~~~g~--------------------~~~A~~~~~~m~~-----~----~~~~~~~li~~~~~~g~~~~a~~~~--- 286 (385)
...+...|+ +++|...+++..+ + ...++..+...+...|++++|+..+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 209 (338)
T 3ro2_A 130 GNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQR 209 (338)
T ss_dssp HHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 666666667 7777777766543 1 2346777888888899999888888
Q ss_pred ---------------HHHHHHHHhcccCChhhHHHHHHHHHhccc--------hhhHHHHHHHHHccCCHHHHHHHHHhC
Q 040338 287 ---------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--------TCYFVCMVDLLGLSGLLGEAKKLIDEM 343 (385)
Q Consensus 287 ---------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~A~~~~~~m 343 (385)
++..+...+...|++++|...+++...... ...+..+...+...|++++|.+.+++.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (338)
T 3ro2_A 210 LLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 289 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 677888888999999999999998776433 557778889999999999999999887
Q ss_pred CCC----CC----cchHHHHHHHHHhcCChHHHHHHHHHHHhcccc
Q 040338 344 PSK----PT----CVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381 (385)
Q Consensus 344 ~~~----p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 381 (385)
... ++ ..++..+...|...|++++|...+++..+....
T Consensus 290 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 290 LAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 652 22 447888999999999999999999999876543
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.46 E-value=8.9e-12 Score=104.76 Aligned_cols=200 Identities=10% Similarity=-0.075 Sum_probs=160.1
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHH
Q 040338 140 LVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDM 219 (385)
Q Consensus 140 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 219 (385)
...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++++.+....
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~------------ 103 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR------------ 103 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC------------
Confidence 5678888899999999999999999998762 336778888999999999999999999999887532
Q ss_pred HHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc--CChhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcc
Q 040338 220 YLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR--RNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSH 297 (385)
Q Consensus 220 ~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~l~~~~~~ 297 (385)
+...+..+...+...|++++|+..|++..+ .+.. ....+..+...+..
T Consensus 104 -----------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-------------------~~~~~~~la~~~~~ 153 (252)
T 2ho1_A 104 -----------NARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPE-------------------RSRVFENLGLVSLQ 153 (252)
T ss_dssp -----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTT-------------------HHHHHHHHHHHHHH
T ss_pred -----------cHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcc-------------------cHHHHHHHHHHHHH
Confidence 233456777788888999999999998875 1110 00133444555566
Q ss_pred cCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCC--CCcchHHHHHHHHHhcCChHHHHHHHH
Q 040338 298 SGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK--PTCVIWGALLGACCSHYNTKLAELVMR 373 (385)
Q Consensus 298 ~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~ 373 (385)
.|++++|...++++.+..+ ...+..+...+...|++++|...++++.+. .+...+..+...+...|++++|.+.++
T Consensus 154 ~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 233 (252)
T 2ho1_A 154 MKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGL 233 (252)
T ss_dssp TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 6777888888888877666 777888999999999999999999998764 456678888899999999999999999
Q ss_pred HHHhccccC
Q 040338 374 NLLQLDVKV 382 (385)
Q Consensus 374 ~~~~~~~~~ 382 (385)
++.+..|..
T Consensus 234 ~~~~~~p~~ 242 (252)
T 2ho1_A 234 QLKRLYPGS 242 (252)
T ss_dssp HHHHHCTTS
T ss_pred HHHHHCCCC
Confidence 999887764
No 46
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.45 E-value=9e-13 Score=118.90 Aligned_cols=131 Identities=11% Similarity=-0.043 Sum_probs=96.3
Q ss_pred hhHHHHHHHhccc-----C----ChhhHHHHHHHHHhcCCCCchHHHH------------------HHHHHHHHhcccCC
Q 040338 248 TQKADLAFELMSR-----R----NMISWMVLISAFSQAGVLEKPRFFF------------------FFVSLLSGCSHSGP 300 (385)
Q Consensus 248 ~~~A~~~~~~m~~-----~----~~~~~~~li~~~~~~g~~~~a~~~~------------------~~~~l~~~~~~~~~ 300 (385)
+++|...+++..+ + ...++..+...|...|++++|+..+ ++..+...+...|+
T Consensus 163 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 242 (406)
T 3sf4_A 163 LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 242 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 6666666554432 1 1245666667777777777777666 67777778888888
Q ss_pred hhhHHHHHHHHHhccc--------hhhHHHHHHHHHccCCHHHHHHHHHhCCCC----CC----cchHHHHHHHHHhcCC
Q 040338 301 VTKGKHYFTAMAKFTY--------TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK----PT----CVIWGALLGACCSHYN 364 (385)
Q Consensus 301 ~~~a~~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----p~----~~~~~~li~~~~~~g~ 364 (385)
+++|...+++...... ..++..+...|...|++++|.+.+++.... ++ ..++..+...|...|+
T Consensus 243 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 322 (406)
T 3sf4_A 243 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGN 322 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 8888888888765433 557778888899999999999998877552 22 4577888889999999
Q ss_pred hHHHHHHHHHHHhc
Q 040338 365 TKLAELVMRNLLQL 378 (385)
Q Consensus 365 ~~~a~~~~~~~~~~ 378 (385)
+++|...+++..+.
T Consensus 323 ~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 323 HDQAMHFAEKHLEI 336 (406)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987764
No 47
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.44 E-value=1.5e-12 Score=117.87 Aligned_cols=250 Identities=12% Similarity=-0.056 Sum_probs=192.3
Q ss_pred hccCChHHHHHHHHHHHHhccCCCc----hHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCC--
Q 040338 63 LCVGNIKMALHLHGLVKKFYFVSDE----SIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMP-- 136 (385)
Q Consensus 63 ~~~~~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~-- 136 (385)
...|++++|...+++..+.+.. +. .++..+...|...|++++|...|++..+ +.....
T Consensus 59 ~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---------------~~~~~~~~ 122 (411)
T 4a1s_A 59 CNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLT---------------LAKSMNDR 122 (411)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---------------HHHHTTCH
T ss_pred HHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---------------HHHHccCc
Confidence 3389999999999999987422 33 4788899999999999999999977532 222221
Q ss_pred CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHC----CCCC-CHhhHHHHHHHhcCccC-----------------ccch
Q 040338 137 ERDLVSWNTMISILTRHGFGFETLCTFIELWNH----GFGL-SSMLYATAFSARASVYD-----------------LEWG 194 (385)
Q Consensus 137 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~-----------------~~~a 194 (385)
+....++..+...|...|++++|...+++..+. +-.| ...++..+...+...|+ +++|
T Consensus 123 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A 202 (411)
T 4a1s_A 123 LGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRA 202 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHH
Confidence 124567888899999999999999999987653 2122 34577888889999999 8888
Q ss_pred hhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc-----CC----hhh
Q 040338 195 PHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR-----RN----MIS 265 (385)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~----~~~ 265 (385)
.+.+++..+.... .++ ......++..+...|...|++++|+..+++..+ ++ ..+
T Consensus 203 ~~~~~~al~~~~~---------------~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 265 (411)
T 4a1s_A 203 VEFYQENLKLMRD---------------LGD--RGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRA 265 (411)
T ss_dssp HHHHHHHHHHHHH---------------HTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHH---------------cCC--HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 8888776543110 000 011234667788889999999999999988765 12 237
Q ss_pred HHHHHHHHHhcCCCCchHHHH------------------HHHHHHHHhcccCChhhHHHHHHHHHhccc--------hhh
Q 040338 266 WMVLISAFSQAGVLEKPRFFF------------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--------TCY 319 (385)
Q Consensus 266 ~~~li~~~~~~g~~~~a~~~~------------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~ 319 (385)
+..+...|...|++++|+..+ ++..+...+...|++++|...+++...... ...
T Consensus 266 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 345 (411)
T 4a1s_A 266 NSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARA 345 (411)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHH
Confidence 888899999999999999888 677888899999999999999998877543 457
Q ss_pred HHHHHHHHHccCCHHHHHHHHHhCCC
Q 040338 320 FVCMVDLLGLSGLLGEAKKLIDEMPS 345 (385)
Q Consensus 320 ~~~li~~~~~~g~~~~A~~~~~~m~~ 345 (385)
+..+...|.+.|++++|.+.|++..+
T Consensus 346 ~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 346 CWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 88899999999999999999987654
No 48
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.43 E-value=4.3e-12 Score=104.41 Aligned_cols=195 Identities=15% Similarity=-0.015 Sum_probs=145.5
Q ss_pred CCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHH
Q 040338 84 VSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTF 163 (385)
Q Consensus 84 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 163 (385)
+++...+..+...+.+.|++++|...|++..+.+ +.+...|..+...+.+.|++++|+..|
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------------------p~~~~a~~~lg~~~~~~g~~~~A~~~~ 62 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-------------------PQDPEALYWLARTQLKLGLVNPALENG 62 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-------------------SSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------------CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5678889999999999999999999999988776 467888999999999999999999999
Q ss_pred HHHHHCCCCC-CHhhHHHHHHHhcCc-----------cCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCch
Q 040338 164 IELWNHGFGL-SSMLYATAFSARASV-----------YDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESS 231 (385)
Q Consensus 164 ~~m~~~g~~p-~~~t~~~ll~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~ 231 (385)
++..+. .| +...+..+..++... |++++|+..++..++..+. +
T Consensus 63 ~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-----------------------~ 117 (217)
T 2pl2_A 63 KTLVAR--TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-----------------------Y 117 (217)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-----------------------C
T ss_pred HHHHHh--CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-----------------------c
Confidence 999885 45 567888888899999 9999999999999887532 3
Q ss_pred hhHHHHHHHHHHcCCChhHHHHHHHhcccC--ChhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcccCChhhHHHHHH
Q 040338 232 IQIGKALVTMYAEGGSTQKADLAFELMSRR--NMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFT 309 (385)
Q Consensus 232 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~l~~~~~~~~~~~~a~~~~~ 309 (385)
...+..+...+...|++++|+..|++..+- +...+ ..+..++...|++++|...++
T Consensus 118 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~----------------------~~la~~~~~~g~~~~A~~~~~ 175 (217)
T 2pl2_A 118 APLHLQRGLVYALLGERDKAEASLKQALALEDTPEIR----------------------SALAELYLSMGRLDEALAQYA 175 (217)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHH----------------------HHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHH----------------------HHHHHHHHHcCCHHHHHHHHH
Confidence 345567778888899999999999887642 23333 344455566667778888888
Q ss_pred HHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCC
Q 040338 310 AMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMP 344 (385)
Q Consensus 310 ~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 344 (385)
+..+..+ ...+..+...+.+.|++++|.+.|++.-
T Consensus 176 ~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 176 KALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 8888777 7778888999999999999999887653
No 49
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.43 E-value=2.3e-12 Score=109.82 Aligned_cols=148 Identities=8% Similarity=-0.138 Sum_probs=98.2
Q ss_pred hhhhHHHHHhhhCCC-------ChhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhH
Q 040338 33 LIDDDYRVFCDIGPR-------YLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDY 105 (385)
Q Consensus 33 ~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 105 (385)
++++|...|+++... +...|..+...+.. .|++++|...+++..+.. +.+..++..+...|...|++++
T Consensus 20 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 20 QQEVILARMEQILASRALTDDERAQLLYERGVLYDS---LGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHH---cccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 455555555544321 23455556666555 788888888888877764 3356777778888888888888
Q ss_pred HHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHh
Q 040338 106 AESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSAR 185 (385)
Q Consensus 106 a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 185 (385)
|.+.|++..+.+ +.+..++..+...+.+.|++++|...|+++.+. .|+.......+..+
T Consensus 96 A~~~~~~al~~~-------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~ 154 (275)
T 1xnf_A 96 AYEAFDSVLELD-------------------PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLA 154 (275)
T ss_dssp HHHHHHHHHHHC-------------------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-------------------ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHH
Confidence 888887765543 345667777777888888888888888887764 44444444444455
Q ss_pred cCccCccchhhHHHHHHHhC
Q 040338 186 ASVYDLEWGPHLHSRVVHME 205 (385)
Q Consensus 186 ~~~~~~~~a~~~~~~~~~~~ 205 (385)
...|++++|...++......
T Consensus 155 ~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 155 EQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHCHHHHHHHHHHHHHHS
T ss_pred HHhcCHHHHHHHHHHHHhcC
Confidence 66677788888877766654
No 50
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.43 E-value=5.4e-12 Score=113.78 Aligned_cols=267 Identities=10% Similarity=-0.066 Sum_probs=202.9
Q ss_pred cCChHHHHHHHHHHHHhccCCC----chHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCC--C
Q 040338 65 VGNIKMALHLHGLVKKFYFVSD----ESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE--R 138 (385)
Q Consensus 65 ~~~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~--~ 138 (385)
.|++++|...+++..+.+.. + ..++..+...|...|++++|...+++... +...... .
T Consensus 22 ~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---------------~~~~~~~~~~ 85 (406)
T 3sf4_A 22 SGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT---------------LARTIGDQLG 85 (406)
T ss_dssp TTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHH
T ss_pred hccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHhccccHH
Confidence 89999999999999987422 3 35788889999999999999999876532 2222211 2
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHHCC----CCC-CHhhHHHHHHHhcCccC--------------------ccc
Q 040338 139 DLVSWNTMISILTRHGFGFETLCTFIELWNHG----FGL-SSMLYATAFSARASVYD--------------------LEW 193 (385)
Q Consensus 139 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g----~~p-~~~t~~~ll~~~~~~~~--------------------~~~ 193 (385)
...++..+...+...|++++|...+++..+.. -.+ ...++..+...+...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 35578888899999999999999999886531 111 14477788888999999 888
Q ss_pred hhhHHHHHHHhCCC-CchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc-----CC----h
Q 040338 194 GPHLHSRVVHMEPS-LDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR-----RN----M 263 (385)
Q Consensus 194 a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~----~ 263 (385)
|...++...+.... ++. .....++..+...|...|++++|...+++..+ ++ .
T Consensus 166 A~~~~~~al~~~~~~~~~------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 227 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDR------------------AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAER 227 (406)
T ss_dssp HHHHHHHHHHHHHHTTCH------------------HHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccCc------------------HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHH
Confidence 88888776653110 011 11234567778888889999999999988764 22 2
Q ss_pred hhHHHHHHHHHhcCCCCchHHHH------------------HHHHHHHHhcccCChhhHHHHHHHHHhccc--------h
Q 040338 264 ISWMVLISAFSQAGVLEKPRFFF------------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--------T 317 (385)
Q Consensus 264 ~~~~~li~~~~~~g~~~~a~~~~------------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~ 317 (385)
.++..+...|...|++++|+..+ ++..+...+...|++++|...+++..+... .
T Consensus 228 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 307 (406)
T 3sf4_A 228 RAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEG 307 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHH
Confidence 37888889999999999999888 677888899999999999999998876533 5
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHhCCCC--------CCcchHHHHHHHHHhcCCh
Q 040338 318 CYFVCMVDLLGLSGLLGEAKKLIDEMPSK--------PTCVIWGALLGACCSHYNT 365 (385)
Q Consensus 318 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------p~~~~~~~li~~~~~~g~~ 365 (385)
..+..+...|...|++++|.+.+++..+. ....++..+...+...|+.
T Consensus 308 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 308 RACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 57778899999999999999999887541 1244677788888887766
No 51
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.42 E-value=1e-11 Score=113.98 Aligned_cols=327 Identities=7% Similarity=-0.113 Sum_probs=171.3
Q ss_pred ccCCChHHHHHHHHHHHHcccchhhHHh-----------hhhhHHHHHhhhCCCChhhHHHHHHHHHhhhc--cCChHHH
Q 040338 5 GSLKSLPIARKIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDIGPRYLFTYNTMINGGVRCLC--VGNIKMA 71 (385)
Q Consensus 5 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~-----------~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~~~~a 71 (385)
.+.|+++.|...++++...|..+..+.- ++++|...|++....++..+..+-..+..... .+++++|
T Consensus 14 ~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~~A 93 (452)
T 3e4b_A 14 LKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHEA 93 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CCHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHHHH
Confidence 3568899999999999887743332221 44899999988775566666655553333110 1478899
Q ss_pred HHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHH---HHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHH
Q 040338 72 LHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYA---ESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMIS 148 (385)
Q Consensus 72 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a---~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~ 148 (385)
...|+...+.|. ...+..|...|...+..+++ .+.+...... .+...+..|..
T Consensus 94 ~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~---------------------g~~~a~~~Lg~ 149 (452)
T 3e4b_A 94 ESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAA---------------------GYPEAGLAQVL 149 (452)
T ss_dssp HHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH---------------------TCTTHHHHHHH
T ss_pred HHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC---------------------CCHHHHHHHHH
Confidence 999999988663 33677788888776654433 3333332221 23445556666
Q ss_pred HHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCcc---CccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCC
Q 040338 149 ILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVY---DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGC 225 (385)
Q Consensus 149 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 225 (385)
.|...+.++++........+.-...+...+..+...|...| +.++|.+.|+...+.|.. +...+
T Consensus 150 ~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~------------ 216 (452)
T 3e4b_A 150 LYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRV------------ 216 (452)
T ss_dssp HHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHH------------
T ss_pred HHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHH------------
Confidence 66666655555444333332222223335555666666666 667777777777666542 22211
Q ss_pred CCCCchhhHHHHHHHHHHcC----CChhHHHHHHHhcccCChhhHHHHHHH-H--HhcCCCCchHHHH----------HH
Q 040338 226 NGIESSIQIGKALVTMYAEG----GSTQKADLAFELMSRRNMISWMVLISA-F--SQAGVLEKPRFFF----------FF 288 (385)
Q Consensus 226 ~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~~~~~li~~-~--~~~g~~~~a~~~~----------~~ 288 (385)
..+...|... ++.++|+..|++....+...+..|... | ...+++++|+..| ++
T Consensus 217 ----------~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~ 286 (452)
T 3e4b_A 217 ----------DSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAE 286 (452)
T ss_dssp ----------HHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ----------HHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 2222233222 456666666665552244455555544 2 3455555666555 34
Q ss_pred HHHHHHhcccC-----ChhhHHHHHHHHHhccchhhHHHHHHHHHc----cCCHHHHHHHHHhCCCCCCcchHHHHHHHH
Q 040338 289 VSLLSGCSHSG-----PVTKGKHYFTAMAKFTYTCYFVCMVDLLGL----SGLLGEAKKLIDEMPSKPTCVIWGALLGAC 359 (385)
Q Consensus 289 ~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~li~~~ 359 (385)
..+...|. .| +.++|...|++.. .+.+.....|...|.. ..++++|.+.|+...+..+......|...|
T Consensus 287 ~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y 364 (452)
T 3e4b_A 287 LLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLF 364 (452)
T ss_dssp HHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHH
T ss_pred HHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHH
Confidence 44444443 33 6666666666666 4445555555555554 336666777766665554555555565555
Q ss_pred Hh----cCChHHHHHHHHHHHhccc
Q 040338 360 CS----HYNTKLAELVMRNLLQLDV 380 (385)
Q Consensus 360 ~~----~g~~~~a~~~~~~~~~~~~ 380 (385)
.. ..+.++|..+++...+.|.
T Consensus 365 ~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 365 SQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp HSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred HhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 53 3466666666666665554
No 52
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.42 E-value=2.3e-12 Score=107.67 Aligned_cols=199 Identities=12% Similarity=0.005 Sum_probs=141.3
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHH
Q 040338 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLI 217 (385)
Q Consensus 138 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 217 (385)
.....|..+...+...|++++|...|+++.+. .+.+...+..+...+...|++++|...++.+.+...
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~----------- 88 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE-NKEDAIPYINFANLLSSVNELERALAFYDKALELDS----------- 88 (243)
T ss_dssp ---------------------CCTTHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----------
Confidence 45667888888899999999999999999874 344678888888899999999999999999887743
Q ss_pred HHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc--C-ChhhHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Q 040338 218 DMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR--R-NMISWMVLISAFSQAGVLEKPRFFFFFVSLLSG 294 (385)
Q Consensus 218 ~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~l~~~ 294 (385)
.+..++..+...+...|++++|...+++..+ | +...+. .+...
T Consensus 89 ------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~----------------------~~a~~ 134 (243)
T 2q7f_A 89 ------------SAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFY----------------------MLGTV 134 (243)
T ss_dssp ------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHH----------------------HHHHH
T ss_pred ------------cchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHH----------------------HHHHH
Confidence 2345678889999999999999999988765 2 333333 34445
Q ss_pred hcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCC--CCcchHHHHHHHHHhcCChHHHHH
Q 040338 295 CSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK--PTCVIWGALLGACCSHYNTKLAEL 370 (385)
Q Consensus 295 ~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--p~~~~~~~li~~~~~~g~~~~a~~ 370 (385)
+...|++++|...++++.+..+ ...+..+...+.+.|++++|.+.|++.... .+..+|..+...|...|++++|..
T Consensus 135 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 214 (243)
T 2q7f_A 135 LVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALE 214 (243)
T ss_dssp HHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHH
Confidence 5566677777788888777665 777888899999999999999999887653 356688889999999999999999
Q ss_pred HHHHHHhccccC
Q 040338 371 VMRNLLQLDVKV 382 (385)
Q Consensus 371 ~~~~~~~~~~~~ 382 (385)
.++++.+..|.+
T Consensus 215 ~~~~~~~~~p~~ 226 (243)
T 2q7f_A 215 MLDKAIDIQPDH 226 (243)
T ss_dssp HHHHHHHHCTTC
T ss_pred HHHHHHccCcch
Confidence 999998887764
No 53
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.41 E-value=1.1e-11 Score=104.10 Aligned_cols=200 Identities=10% Similarity=0.011 Sum_probs=150.9
Q ss_pred hhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHH
Q 040338 49 LFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRL 128 (385)
Q Consensus 49 ~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a 128 (385)
...|..+...+.. .|++++|...++.+.+.. +.+...+..+...|...|++++|.+.|+++.+.+
T Consensus 37 ~~~~~~~a~~~~~---~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~----------- 101 (252)
T 2ho1_A 37 RDAYIQLGLGYLQ---RGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD----------- 101 (252)
T ss_dssp HHHHHHHHHHHHH---TTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHH---cCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----------
Confidence 4556666666656 899999999999998874 4467888899999999999999999998876544
Q ss_pred HHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-CHhhHHHHHHHhcCccCccchhhHHHHHHHhCCC
Q 040338 129 LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGL-SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPS 207 (385)
Q Consensus 129 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 207 (385)
+.+...+..+...+...|++++|.++|+++.+.+..| +...+..+...+...|++++|.+.++...+....
T Consensus 102 --------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 173 (252)
T 2ho1_A 102 --------SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN 173 (252)
T ss_dssp --------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC
T ss_pred --------cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc
Confidence 3567788889999999999999999999998744455 4567778888899999999999999998887532
Q ss_pred CchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhcccC---ChhhHHHHHHHHHhcCCCCchHH
Q 040338 208 LDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRR---NMISWMVLISAFSQAGVLEKPRF 284 (385)
Q Consensus 208 ~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~a~~ 284 (385)
+...+..+...+...|++++|...++...+. +...+..+...+
T Consensus 174 -----------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~----------- 219 (252)
T 2ho1_A 174 -----------------------QPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLA----------- 219 (252)
T ss_dssp -----------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHH-----------
T ss_pred -----------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-----------
Confidence 2334566777788888999999999888652 333444444444
Q ss_pred HHHHHHHHHHhcccCChhhHHHHHHHHHhccc
Q 040338 285 FFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTY 316 (385)
Q Consensus 285 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 316 (385)
...|+.++|.+.++.+.+..+
T Consensus 220 -----------~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 220 -----------KVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp -----------HHTTCHHHHHHHHHHHHHHCT
T ss_pred -----------HHccCHHHHHHHHHHHHHHCC
Confidence 445556666666666665554
No 54
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.41 E-value=1.2e-11 Score=110.98 Aligned_cols=293 Identities=9% Similarity=-0.049 Sum_probs=206.0
Q ss_pred HHHHHHHHhhhccCChHHHHHHHHHHHHhc--cCCC--chHHHhHHHHHH--hcCChhHHH-----------HHHHhccC
Q 040338 53 NTMINGGVRCLCVGNIKMALHLHGLVKKFY--FVSD--ESIAKSSIDMHV--KCGAVDYAE-----------SAFLRMLN 115 (385)
Q Consensus 53 ~~li~~~~~~~~~~~~~~a~~~~~~m~~~g--~~~~--~~~~~~li~~~~--~~g~~~~a~-----------~~~~~m~~ 115 (385)
..+|.-+-.+.+.+++++|..+++++.+.- ...| ...|-.++..-. -.+.++.+. +.++.+..
T Consensus 13 ~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~ 92 (383)
T 3ulq_A 13 GEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDK 92 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHh
Confidence 444554444555899999999999997752 2223 333444443221 123333333 44444322
Q ss_pred CCccccccchHHHHHHhcCCCCCC----cchHHHHHHHHHhCCCchHHHHHHHHHHHC----CCCC-CHhhHHHHHHHhc
Q 040338 116 PSLFCWKFGIIRLLIMFQKMPERD----LVSWNTMISILTRHGFGFETLCTFIELWNH----GFGL-SSMLYATAFSARA 186 (385)
Q Consensus 116 ~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~t~~~ll~~~~ 186 (385)
... +.+ ...+......+...|++++|+..|++..+. +-.+ ...++..+...+.
T Consensus 93 ~~~------------------~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~ 154 (383)
T 3ulq_A 93 KQA------------------RLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYY 154 (383)
T ss_dssp HTH------------------HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHH
T ss_pred cCC------------------CchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH
Confidence 110 001 011222456678899999999999999764 2122 3467888889999
Q ss_pred CccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc-----C
Q 040338 187 SVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR-----R 261 (385)
Q Consensus 187 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~ 261 (385)
..|+++.|...+++..+.....+.. ......+++.+...|...|++++|+..|++..+ +
T Consensus 155 ~~~~~~~A~~~~~~al~~~~~~~~~----------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 218 (383)
T 3ulq_A 155 YMKQTYFSMDYARQAYEIYKEHEAY----------------NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK 218 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCSTT----------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHHHHHhCccc----------------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999988752211110 011234567888889999999999999987764 1
Q ss_pred C----hhhHHHHHHHHHhcCCCCchHHHH------------------HHHHHHHHhcccCChhhHHHHHHHHHhccc---
Q 040338 262 N----MISWMVLISAFSQAGVLEKPRFFF------------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--- 316 (385)
Q Consensus 262 ~----~~~~~~li~~~~~~g~~~~a~~~~------------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--- 316 (385)
+ ..++..+...|...|++++|+..+ ++..+...+...|++++|...+++..+...
T Consensus 219 ~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 298 (383)
T 3ulq_A 219 QPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAG 298 (383)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC
Confidence 2 247888899999999999999888 688889999999999999999998877532
Q ss_pred ----hhhHHHHHHHHHccCC---HHHHHHHHHhCCCCCC-cchHHHHHHHHHhcCChHHHHHHHHHHHhcc
Q 040338 317 ----TCYFVCMVDLLGLSGL---LGEAKKLIDEMPSKPT-CVIWGALLGACCSHYNTKLAELVMRNLLQLD 379 (385)
Q Consensus 317 ----~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 379 (385)
...+..+...+...|+ +++|..++++....|+ ...+..+...|...|++++|...+++..+..
T Consensus 299 ~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 299 DVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp CHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 3336678888999999 9999999999865433 4467789999999999999999999987643
No 55
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.41 E-value=6e-11 Score=100.81 Aligned_cols=233 Identities=10% Similarity=-0.020 Sum_probs=168.6
Q ss_pred cCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCC--cch
Q 040338 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERD--LVS 142 (385)
Q Consensus 65 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~ 142 (385)
.|++++|...++...+.. +.+...+..+..+|...|++++|...|++..+... .++ ..+
T Consensus 16 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~------------------~~~~~~~~ 76 (272)
T 3u4t_A 16 NNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVN------------------ATKAKSAD 76 (272)
T ss_dssp TTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSC------------------TTTCCHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccC------------------chhHHHHH
Confidence 899999999999999864 33566889999999999999999999998876221 232 234
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHh
Q 040338 143 WNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLK 222 (385)
Q Consensus 143 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 222 (385)
|..+...+...|++++|+..|++..+.. +.+..++..+...+...|++++|...++...+..+ .
T Consensus 77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~-------------- 140 (272)
T 3u4t_A 77 FEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT-T-------------- 140 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC-C--------------
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC-C--------------
Confidence 8889999999999999999999998852 23567888999999999999999999999877632 1
Q ss_pred cCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc--C-ChhhHHHHHHHHHhcCC---CCchHHHHHHHHHHHHhc
Q 040338 223 CGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR--R-NMISWMVLISAFSQAGV---LEKPRFFFFFVSLLSGCS 296 (385)
Q Consensus 223 ~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~---~~~a~~~~~~~~l~~~~~ 296 (385)
+...+..+...+...+++++|...|++..+ | +...+..+...+...|+ +++|+..+
T Consensus 141 --------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~---------- 202 (272)
T 3u4t_A 141 --------DPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYY---------- 202 (272)
T ss_dssp --------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHH----------
T ss_pred --------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHH----------
Confidence 223344555233334599999999998876 3 45666667777777776 66665543
Q ss_pred ccCChhhHHHHHHHHHhcc---chhhHHHHHHHHHccCCHHHHHHHHHhCCCC-CC-cchHHHH
Q 040338 297 HSGPVTKGKHYFTAMAKFT---YTCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-PT-CVIWGAL 355 (385)
Q Consensus 297 ~~~~~~~a~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p~-~~~~~~l 355 (385)
+++.++........ ....+..+...|.+.|++++|.+.|++..+. |+ ...+..+
T Consensus 203 -----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 261 (272)
T 3u4t_A 203 -----EKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGL 261 (272)
T ss_dssp -----HHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred -----HHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHh
Confidence 22222222111110 1367777888999999999999999988752 44 3334433
No 56
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.41 E-value=2.2e-11 Score=100.12 Aligned_cols=202 Identities=8% Similarity=-0.062 Sum_probs=159.7
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHH
Q 040338 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLI 217 (385)
Q Consensus 138 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 217 (385)
.+...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++.+.+....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---------- 74 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD---------- 74 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC----------
Confidence 356678889999999999999999999998752 335778888999999999999999999999887531
Q ss_pred HHHHhcCCCCCCchhhHHHHHHHHHHcC-CChhHHHHHHHhccc--CChhhHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Q 040338 218 DMYLKCGCNGIESSIQIGKALVTMYAEG-GSTQKADLAFELMSR--RNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSG 294 (385)
Q Consensus 218 ~~~~~~g~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~l~~~ 294 (385)
+..++..+...+... |++++|...++++.+ .+. . ....+..+...
T Consensus 75 -------------~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~----------------~---~~~~~~~l~~~ 122 (225)
T 2vq2_A 75 -------------SAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYP----------------T---PYIANLNKGIC 122 (225)
T ss_dssp -------------CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCS----------------C---HHHHHHHHHHH
T ss_pred -------------ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCc----------------c---hHHHHHHHHHH
Confidence 234556777888888 999999999998876 111 0 01133445555
Q ss_pred hcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-C--CcchHHHHHHHHHhcCChHHHH
Q 040338 295 CSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-P--TCVIWGALLGACCSHYNTKLAE 369 (385)
Q Consensus 295 ~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p--~~~~~~~li~~~~~~g~~~~a~ 369 (385)
+...|++++|...++++.+..+ ...+..+...+.+.|++++|.+.+++.... | +...+..+...+...|+.+++.
T Consensus 123 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 202 (225)
T 2vq2_A 123 SAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAY 202 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHH
Confidence 6666777888888888877666 777888999999999999999999988663 4 5566777888889999999999
Q ss_pred HHHHHHHhccccC
Q 040338 370 LVMRNLLQLDVKV 382 (385)
Q Consensus 370 ~~~~~~~~~~~~~ 382 (385)
.+++.+.+..|..
T Consensus 203 ~~~~~~~~~~p~~ 215 (225)
T 2vq2_A 203 EYEAQLQANFPYS 215 (225)
T ss_dssp HHHHHHHHHCTTC
T ss_pred HHHHHHHHhCCCC
Confidence 9999998877664
No 57
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.40 E-value=4e-12 Score=106.12 Aligned_cols=119 Identities=9% Similarity=-0.005 Sum_probs=59.2
Q ss_pred cCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHH
Q 040338 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWN 144 (385)
Q Consensus 65 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 144 (385)
.|++++|...++++.+.. +.+...+..+...|...|++++|.+.|++..+.+ +.+..++.
T Consensus 36 ~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------------------~~~~~~~~ 95 (243)
T 2q7f_A 36 FGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-------------------SSAATAYY 95 (243)
T ss_dssp ------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------TTCHHHHH
T ss_pred hhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------------------CcchHHHH
Confidence 556666666665555532 2244555555555555566666665555544322 23444555
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHh
Q 040338 145 TMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHM 204 (385)
Q Consensus 145 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 204 (385)
.+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+.
T Consensus 96 ~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 154 (243)
T 2q7f_A 96 GAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL 154 (243)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 55555555566666666555555432 223444455555555555555555555555544
No 58
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.40 E-value=4.1e-11 Score=106.92 Aligned_cols=243 Identities=9% Similarity=0.027 Sum_probs=183.1
Q ss_pred hhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCC-hhHHHHHHHhccCCCccccccchHHH
Q 040338 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGA-VDYAESAFLRMLNPSLFCWKFGIIRL 128 (385)
Q Consensus 50 ~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~~~~~a 128 (385)
..|+.+-..+.. .|++++|+..+++..+.. +-+...|+.+..++.+.|+ +++|+..|++..+.+
T Consensus 98 ~a~~~lg~~~~~---~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~----------- 162 (382)
T 2h6f_A 98 DVYDYFRAVLQR---DERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ----------- 162 (382)
T ss_dssp HHHHHHHHHHHH---TCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHHHHH---CCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-----------
Confidence 456666666555 899999999999999875 3367889999999999997 999999999987766
Q ss_pred HHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-CHhhHHHHHHHhcCccCccchhhHHHHHHHhCCC
Q 040338 129 LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGL-SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPS 207 (385)
Q Consensus 129 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 207 (385)
+.+...|+.+..++...|++++|+..|+++.+. .| +...|..+..++.+.|++++|+..++.+++..+.
T Consensus 163 --------P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~ 232 (382)
T 2h6f_A 163 --------PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR 232 (382)
T ss_dssp --------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT
T ss_pred --------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 467889999999999999999999999999985 44 6788999999999999999999999999998642
Q ss_pred CchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHc-CCChhHH-----HHHHHhccc--C-ChhhHHHHHHHHHhcCC
Q 040338 208 LDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAE-GGSTQKA-----DLAFELMSR--R-NMISWMVLISAFSQAGV 278 (385)
Q Consensus 208 ~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~-~g~~~~A-----~~~~~~m~~--~-~~~~~~~li~~~~~~g~ 278 (385)
+...|+.+...+.+ .|..++| +..|++..+ | +...|+.+...+...|.
T Consensus 233 -----------------------~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~ 289 (382)
T 2h6f_A 233 -----------------------NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGL 289 (382)
T ss_dssp -----------------------CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCG
T ss_pred -----------------------CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCc
Confidence 33455666666666 5555777 467776654 3 45566666666655441
Q ss_pred CCchHHHHHHHHHHHHhcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccC---------CHHHHHHHHHhC-CC-
Q 040338 279 LEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSG---------LLGEAKKLIDEM-PS- 345 (385)
Q Consensus 279 ~~~a~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g---------~~~~A~~~~~~m-~~- 345 (385)
++.++|...+.++ +..+ ...+..+...|.+.| ..++|+++|+++ .+
T Consensus 290 --------------------~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 290 --------------------SKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEK 348 (382)
T ss_dssp --------------------GGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTT
T ss_pred --------------------cchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHh
Confidence 1355666666666 4444 677778888888764 258899999998 44
Q ss_pred CCCc-chHHHHHHHHHh
Q 040338 346 KPTC-VIWGALLGACCS 361 (385)
Q Consensus 346 ~p~~-~~~~~li~~~~~ 361 (385)
.|.. ..|..+...+..
T Consensus 349 DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 349 DTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp CGGGHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHH
Confidence 3543 356666665544
No 59
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.39 E-value=6e-12 Score=110.12 Aligned_cols=249 Identities=10% Similarity=-0.053 Sum_probs=188.7
Q ss_pred ccCChHHHHHHHHHHHHhccCCC----chHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCC--
Q 040338 64 CVGNIKMALHLHGLVKKFYFVSD----ESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE-- 137 (385)
Q Consensus 64 ~~~~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~-- 137 (385)
..|++++|...++++.+.... + ...+..+...|...|++++|.+.+++..+. ......
T Consensus 17 ~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---------------~~~~~~~~ 80 (338)
T 3ro2_A 17 KSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL---------------ARTIGDQL 80 (338)
T ss_dssp HTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------HHHHTCHH
T ss_pred HhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------------hhcccccH
Confidence 389999999999999987422 3 367888999999999999999999775321 111111
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCC-CCC----HhhHHHHHHHhcCccC--------------------cc
Q 040338 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGF-GLS----SMLYATAFSARASVYD--------------------LE 192 (385)
Q Consensus 138 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~~~--------------------~~ 192 (385)
....++..+...+...|++++|...+++..+... .++ ..++..+...+...|+ ++
T Consensus 81 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (338)
T 3ro2_A 81 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQ 160 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHH
Confidence 2355788888999999999999999998765311 112 3477788888899999 88
Q ss_pred chhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc-----CC----h
Q 040338 193 WGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR-----RN----M 263 (385)
Q Consensus 193 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~----~ 263 (385)
+|.+.+++...... +.+ +......++..+...+...|++++|...+++..+ ++ .
T Consensus 161 ~A~~~~~~a~~~~~---------------~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 223 (338)
T 3ro2_A 161 AAVDLYEENLSLVT---------------ALG--DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAER 223 (338)
T ss_dssp HHHHHHHHHHHHHH---------------HHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHH---------------hcC--CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHH
Confidence 88888877654311 000 0011234567778888889999999999988764 12 2
Q ss_pred hhHHHHHHHHHhcCCCCchHHHH------------------HHHHHHHHhcccCChhhHHHHHHHHHhccc--------h
Q 040338 264 ISWMVLISAFSQAGVLEKPRFFF------------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--------T 317 (385)
Q Consensus 264 ~~~~~li~~~~~~g~~~~a~~~~------------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~ 317 (385)
.++..+...+...|++++|+..+ ++..+...+...|++++|...+++...... .
T Consensus 224 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 303 (338)
T 3ro2_A 224 RAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEG 303 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHH
Confidence 37788888999999999999888 677888889999999999999998876543 4
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHhCCC
Q 040338 318 CYFVCMVDLLGLSGLLGEAKKLIDEMPS 345 (385)
Q Consensus 318 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 345 (385)
..+..+...|.+.|++++|.+.+++..+
T Consensus 304 ~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 304 RACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4777899999999999999999987653
No 60
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.39 E-value=6.1e-11 Score=101.09 Aligned_cols=225 Identities=5% Similarity=-0.088 Sum_probs=154.0
Q ss_pred ChhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHh----cCChhHHHHHHHhccCCCcccccc
Q 040338 48 YLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVK----CGAVDYAESAFLRMLNPSLFCWKF 123 (385)
Q Consensus 48 ~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~ 123 (385)
++.++..+-..+.. .|++++|...|++..+ +.+...+..+...|.. .+++++|.+.|++..+.
T Consensus 5 ~~~a~~~lg~~~~~---~~~~~~A~~~~~~a~~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~------- 71 (273)
T 1ouv_A 5 DPKELVGLGAKSYK---EKDFTQAKKYFEKACD---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL------- 71 (273)
T ss_dssp CHHHHHHHHHHHHH---TTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------
T ss_pred ChHHHHHHHHHHHh---CCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC-------
Confidence 44455555555545 6788888888887776 6666777777777777 78888888887765432
Q ss_pred chHHHHHHhcCCCCCCcchHHHHHHHHHh----CCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcC----ccCccchh
Q 040338 124 GIIRLLIMFQKMPERDLVSWNTMISILTR----HGFGFETLCTFIELWNHGFGLSSMLYATAFSARAS----VYDLEWGP 195 (385)
Q Consensus 124 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~ 195 (385)
.+...+..+...|.. .+++++|+..|++..+.+ +...+..+...+.. .+++++|.
T Consensus 72 --------------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~ 134 (273)
T 1ouv_A 72 --------------NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAV 134 (273)
T ss_dssp --------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred --------------CCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHH
Confidence 245667777777777 788888888888877764 55666677777776 77888888
Q ss_pred hHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHc----CCChhHHHHHHHhcccC-ChhhHHHHH
Q 040338 196 HLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAE----GGSTQKADLAFELMSRR-NMISWMVLI 270 (385)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~-~~~~~~~li 270 (385)
..++...+.+ +...+..+...|.. .+++++|+..|++..+. +...+..+.
T Consensus 135 ~~~~~a~~~~-------------------------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 189 (273)
T 1ouv_A 135 EYFTKACDLN-------------------------DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAG 189 (273)
T ss_dssp HHHHHHHHTT-------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhcC-------------------------cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 8887776654 22456667777776 77888888888776543 333343444
Q ss_pred HHHHhcCCCCchHHHHHHHHHHHHhcccCChhhHHHHHHHHHhccchhhHHHHHHHHHc----cCCHHHHHHHHHhCCC
Q 040338 271 SAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGL----SGLLGEAKKLIDEMPS 345 (385)
Q Consensus 271 ~~~~~~g~~~~a~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~ 345 (385)
..|... ....+++++|...+++..+.+....+..+...|.+ .+++++|.+.|++..+
T Consensus 190 ~~~~~g------------------~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~ 250 (273)
T 1ouv_A 190 NMYHHG------------------EGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCK 250 (273)
T ss_dssp HHHHHT------------------CSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHH
T ss_pred HHHHcC------------------CCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHH
Confidence 333330 01167777788888887777776677777778877 8888888888876554
No 61
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.38 E-value=1.4e-10 Score=106.96 Aligned_cols=282 Identities=11% Similarity=-0.013 Sum_probs=195.2
Q ss_pred CCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCC-----CCCCcchHHHHHHHHHhCCCchH
Q 040338 84 VSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKM-----PERDLVSWNTMISILTRHGFGFE 158 (385)
Q Consensus 84 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~li~~~~~~~~~~~ 158 (385)
......||.|...+...|+.++|++.|++.. +++.+. .+....+|+.+..+|...|++++
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl---------------~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~ 112 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAE---------------ELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSD 112 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---------------HHHHhcCccccchHHHHHHHHHHHHHHHcCChHH
Confidence 3446789999999999999999999997642 222211 12345689999999999999999
Q ss_pred HHHHHHHHHHC-----C-CCC-CHhhHHHHHHHhcC--ccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhc---CCC
Q 040338 159 TLCTFIELWNH-----G-FGL-SSMLYATAFSARAS--VYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKC---GCN 226 (385)
Q Consensus 159 a~~~~~~m~~~-----g-~~p-~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~ 226 (385)
|...+++..+. + ..+ ...++.....++.. .+++++|+..|++.++..+. ++..+..+..++.+. ++.
T Consensus 113 A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~ 191 (472)
T 4g1t_A 113 VQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPS 191 (472)
T ss_dssp HHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHH
Confidence 99999887642 1 112 24456555444443 45789999999999987642 444555555554443 333
Q ss_pred C------------CCchhhHHHHHHHHHHc----CCChhHHHHHHHhccc---CChhhHHHHHHHHHhcCCCCchHHHH-
Q 040338 227 G------------IESSIQIGKALVTMYAE----GGSTQKADLAFELMSR---RNMISWMVLISAFSQAGVLEKPRFFF- 286 (385)
Q Consensus 227 ~------------~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~- 286 (385)
+ .+.+..++..+...+.. .|+.++|...+++..+ .+...+..+...|...|++++|+..+
T Consensus 192 ~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 271 (472)
T 4g1t_A 192 QNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLK 271 (472)
T ss_dssp CCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 3 33445566666555554 4678899999987754 35678888999999999999999988
Q ss_pred -----------HHHHHHHHhcc-------------------cCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHH
Q 040338 287 -----------FFVSLLSGCSH-------------------SGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLG 334 (385)
Q Consensus 287 -----------~~~~l~~~~~~-------------------~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~ 334 (385)
++..+...|.. .+..+.|...+++.....+ ...+..+...|...|+++
T Consensus 272 ~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~ 351 (472)
T 4g1t_A 272 KALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYE 351 (472)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHH
T ss_pred HHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHH
Confidence 44444444422 2335677888888777766 788888999999999999
Q ss_pred HHHHHHHhCCCC-CCcc----hHHHHHH-HHHhcCChHHHHHHHHHHHhcccc
Q 040338 335 EAKKLIDEMPSK-PTCV----IWGALLG-ACCSHYNTKLAELVMRNLLQLDVK 381 (385)
Q Consensus 335 ~A~~~~~~m~~~-p~~~----~~~~li~-~~~~~g~~~~a~~~~~~~~~~~~~ 381 (385)
+|++.|++..+. |+.. .+..+.. .+...|++++|+..+++.++.++.
T Consensus 352 ~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~ 404 (472)
T 4g1t_A 352 EAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQK 404 (472)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc
Confidence 999999987643 3322 2333332 345678999999999998887664
No 62
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.38 E-value=4.5e-11 Score=98.31 Aligned_cols=167 Identities=13% Similarity=-0.051 Sum_probs=131.3
Q ss_pred ChhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHH
Q 040338 48 YLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIR 127 (385)
Q Consensus 48 ~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 127 (385)
+...|..+...+.. .|++++|.+.++.+.+.. +.+...+..+...|...|++++|.+.|++..+.+
T Consensus 7 ~~~~~~~~~~~~~~---~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---------- 72 (225)
T 2vq2_A 7 VSNIKTQLAMEYMR---GQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK---------- 72 (225)
T ss_dssp HHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------
T ss_pred cHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC----------
Confidence 34566677777666 899999999999998864 3467788889999999999999999998876544
Q ss_pred HHHHhcCCCCCCcchHHHHHHHHHhC-CCchHHHHHHHHHHHCCCCCC-HhhHHHHHHHhcCccCccchhhHHHHHHHhC
Q 040338 128 LLIMFQKMPERDLVSWNTMISILTRH-GFGFETLCTFIELWNHGFGLS-SMLYATAFSARASVYDLEWGPHLHSRVVHME 205 (385)
Q Consensus 128 a~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 205 (385)
+.+..++..+...+... |++++|...++++.+.+..|+ ...+..+..++...|++++|...++.+.+..
T Consensus 73 ---------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 143 (225)
T 2vq2_A 73 ---------PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ 143 (225)
T ss_dssp ---------TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred ---------CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 35667888889999999 999999999999987433443 5677788888999999999999999988764
Q ss_pred CCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc
Q 040338 206 PSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR 260 (385)
Q Consensus 206 ~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 260 (385)
+. +...+..+...+.+.|++++|...++...+
T Consensus 144 ~~-----------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 175 (225)
T 2vq2_A 144 PQ-----------------------FPPAFKELARTKMLAGQLGDADYYFKKYQS 175 (225)
T ss_dssp TT-----------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CC-----------------------CchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 32 233456667777778899999999988764
No 63
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.33 E-value=1.2e-11 Score=98.86 Aligned_cols=152 Identities=12% Similarity=-0.004 Sum_probs=136.6
Q ss_pred hhhHHHHHHHHHHcCCChhHHHHHHHhccc--C-ChhhHHHHHHHHHhcCCCCchHHHH------------HHHHHHHHh
Q 040338 231 SIQIGKALVTMYAEGGSTQKADLAFELMSR--R-NMISWMVLISAFSQAGVLEKPRFFF------------FFVSLLSGC 295 (385)
Q Consensus 231 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~------------~~~~l~~~~ 295 (385)
+..+|..+...|.+.|++++|+..|++..+ | +..++..+..+|.+.|++++|+..+ .+..+...+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSAN 83 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 567788999999999999999999998875 4 6788999999999999999999988 777888888
Q ss_pred cccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCC-CC-CcchHHHHHHHHHhcCChHHHHHH
Q 040338 296 SHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPS-KP-TCVIWGALLGACCSHYNTKLAELV 371 (385)
Q Consensus 296 ~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~p-~~~~~~~li~~~~~~g~~~~a~~~ 371 (385)
...++++.+...+.+.....+ ...+..+...|.+.|++++|++.|++..+ .| +..+|..+..+|.+.|++++|++.
T Consensus 84 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 163 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKY 163 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999999988877 78888899999999999999999998876 34 567899999999999999999999
Q ss_pred HHHHHhccccC
Q 040338 372 MRNLLQLDVKV 382 (385)
Q Consensus 372 ~~~~~~~~~~~ 382 (385)
|++.++.+|+.
T Consensus 164 ~~~al~~~p~~ 174 (184)
T 3vtx_A 164 FKKALEKEEKK 174 (184)
T ss_dssp HHHHHHTTHHH
T ss_pred HHHHHhCCccC
Confidence 99999988764
No 64
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.33 E-value=2.1e-11 Score=105.69 Aligned_cols=255 Identities=7% Similarity=-0.064 Sum_probs=160.8
Q ss_pred CchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCC----CCCCcchHHHHHHHHHhCCCchHHHH
Q 040338 86 DESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKM----PERDLVSWNTMISILTRHGFGFETLC 161 (385)
Q Consensus 86 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~li~~~~~~~~~~~a~~ 161 (385)
+..++..+...|...|++++|..+|+++.+. +... .+....++..+...|...|++++|..
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~---------------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 90 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALED---------------LEKTSGHDHPDVATMLNILALVYRDQNKYKDAAN 90 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------HHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------------HHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 3566778888888889999999888776431 1111 02345678889999999999999999
Q ss_pred HHHHHHHC------CCCC-CHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhH
Q 040338 162 TFIELWNH------GFGL-SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQI 234 (385)
Q Consensus 162 ~~~~m~~~------g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~ 234 (385)
.+++..+. +-.| ...++..+...+...|++++|...+++..+.... ....+.+....+
T Consensus 91 ~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~---------------~~~~~~~~~~~~ 155 (311)
T 3nf1_A 91 LLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK---------------VLGKDHPDVAKQ 155 (311)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH---------------HHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH---------------hcCCCChHHHHH
Confidence 99998764 2233 4567888999999999999999999998875200 000001123345
Q ss_pred HHHHHHHHHcCCChhHHHHHHHhcccCChhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcccCChhhHHHHHHHHHhc
Q 040338 235 GKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKF 314 (385)
Q Consensus 235 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 314 (385)
+..+...+...|++++|+..|++..+. +.+....+......++..+...+...|++++|...++++.+.
T Consensus 156 ~~~la~~~~~~~~~~~A~~~~~~a~~~-----------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 156 LNNLALLCQNQGKYEEVEYYYQRALEI-----------YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHH-----------HHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH-----------HHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 678888899999999999999887541 011100011111114445555556666666666666666543
Q ss_pred cc-----------------hhhHHHHHHHHHccCCHHHHHHHHHhCCCC--CCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 040338 315 TY-----------------TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK--PTCVIWGALLGACCSHYNTKLAELVMRNL 375 (385)
Q Consensus 315 ~~-----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 375 (385)
.. ...+..+...+...+.+.+|...++..... .+..+|..+...|.+.|++++|...+++.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 304 (311)
T 3nf1_A 225 AHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAA 304 (311)
T ss_dssp HHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 21 222333344445566666666777666653 34567889999999999999999999999
Q ss_pred Hhcccc
Q 040338 376 LQLDVK 381 (385)
Q Consensus 376 ~~~~~~ 381 (385)
.+..+.
T Consensus 305 l~l~~~ 310 (311)
T 3nf1_A 305 MRSRKQ 310 (311)
T ss_dssp HHHHC-
T ss_pred HHHhhc
Confidence 876553
No 65
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.32 E-value=8.2e-11 Score=105.57 Aligned_cols=219 Identities=6% Similarity=-0.086 Sum_probs=167.8
Q ss_pred HHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCC--CcchHHHHHHHHHhCCCchHHHHHHHHHHHCC
Q 040338 93 SIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPER--DLVSWNTMISILTRHGFGFETLCTFIELWNHG 170 (385)
Q Consensus 93 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 170 (385)
....+...|++++|...|++..+. +...+.+ ...+|..+...|...|++++|+..+++..+.-
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~---------------~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 173 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESK---------------LIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIY 173 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT---------------GGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH---------------HhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 556777899999999999876543 2222111 34678889999999999999999999986531
Q ss_pred --C---CC-CHhhHHHHHHHhcCccCccchhhHHHHHHHhCCC-CchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHH
Q 040338 171 --F---GL-SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPS-LDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYA 243 (385)
Q Consensus 171 --~---~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~ 243 (385)
. .| ...++..+...+...|++++|...++...+.... ++.. ....++..+...|.
T Consensus 174 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------------------~~~~~~~~lg~~y~ 235 (383)
T 3ulq_A 174 KEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQ------------------LMGRTLYNIGLCKN 235 (383)
T ss_dssp HTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH------------------HHHHHHHHHHHHHH
T ss_pred HhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChH------------------HHHHHHHHHHHHHH
Confidence 1 11 2457788889999999999999999998865221 1111 12245678888999
Q ss_pred cCCChhHHHHHHHhccc-----CC----hhhHHHHHHHHHhcCCCCchHHHH-----------------HHHHHHHHhcc
Q 040338 244 EGGSTQKADLAFELMSR-----RN----MISWMVLISAFSQAGVLEKPRFFF-----------------FFVSLLSGCSH 297 (385)
Q Consensus 244 ~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~a~~~~-----------------~~~~l~~~~~~ 297 (385)
..|++++|+..|++..+ .+ ..++..+...|.+.|++++|...+ .+..+...+..
T Consensus 236 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~ 315 (383)
T 3ulq_A 236 SQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLS 315 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTS
T ss_pred HCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 99999999999988765 22 356888899999999999999988 45678888888
Q ss_pred cCC---hhhHHHHHHHHHhccc-hhhHHHHHHHHHccCCHHHHHHHHHhCC
Q 040338 298 SGP---VTKGKHYFTAMAKFTY-TCYFVCMVDLLGLSGLLGEAKKLIDEMP 344 (385)
Q Consensus 298 ~~~---~~~a~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 344 (385)
.|+ .++|..++++...... ...+..+...|...|++++|.+.+++..
T Consensus 316 ~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 316 GPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 998 8888888887744333 6778889999999999999999998764
No 66
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.31 E-value=3.6e-11 Score=104.12 Aligned_cols=257 Identities=11% Similarity=-0.026 Sum_probs=165.5
Q ss_pred hhhHHHHHHHHHhhhccCChHHHHHHHHHHHHh-------ccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCcccc
Q 040338 49 LFTYNTMINGGVRCLCVGNIKMALHLHGLVKKF-------YFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121 (385)
Q Consensus 49 ~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~-------g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 121 (385)
..++..+...+.. .|++++|..+++++.+. ..+....++..+...|...|++++|...+++..+
T Consensus 27 ~~~~~~l~~~~~~---~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~------ 97 (311)
T 3nf1_A 27 LRTLHNLVIQYAS---QGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALA------ 97 (311)
T ss_dssp HHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------
Confidence 3456667777666 89999999999999874 2333567788899999999999999999977643
Q ss_pred ccchHHHHHHhcCC----CCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHC------CCCC-CHhhHHHHHHHhcCccC
Q 040338 122 KFGIIRLLIMFQKM----PERDLVSWNTMISILTRHGFGFETLCTFIELWNH------GFGL-SSMLYATAFSARASVYD 190 (385)
Q Consensus 122 ~~~~~~a~~~~~~~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p-~~~t~~~ll~~~~~~~~ 190 (385)
++.+. .+....++..+...|...|++++|...|++..+. +-.| ....+..+...+...|+
T Consensus 98 ---------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 168 (311)
T 3nf1_A 98 ---------IREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGK 168 (311)
T ss_dssp ---------HHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTC
T ss_pred ---------HHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC
Confidence 22111 1234567888999999999999999999998764 2334 45667888899999999
Q ss_pred ccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhcccCChhhHHHHH
Q 040338 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLI 270 (385)
Q Consensus 191 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li 270 (385)
+++|.+.++...+... +....+.+....++..+...|...|++++|...+++..+.....
T Consensus 169 ~~~A~~~~~~a~~~~~---------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----- 228 (311)
T 3nf1_A 169 YEEVEYYYQRALEIYQ---------------TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHER----- 228 (311)
T ss_dssp HHHHHHHHHHHHHHHH---------------HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHH---------------HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-----
Confidence 9999999999887510 00000011123456778888889999999999999887411000
Q ss_pred HHHHhcCCCCchHHHH--HHHHHHHHhcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCC
Q 040338 271 SAFSQAGVLEKPRFFF--FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMP 344 (385)
Q Consensus 271 ~~~~~~g~~~~a~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 344 (385)
.+............. .+..+...+...+.+.++...++......+ ..++..+...|.+.|++++|.+.|++..
T Consensus 229 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 305 (311)
T 3nf1_A 229 -EFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAM 305 (311)
T ss_dssp -HHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred -cCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 000000000000000 333344444556666777777777766555 7778888888889999999988887654
No 67
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.31 E-value=2.8e-10 Score=104.37 Aligned_cols=287 Identities=10% Similarity=-0.032 Sum_probs=182.0
Q ss_pred cCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCCh---hHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcc
Q 040338 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAV---DYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLV 141 (385)
Q Consensus 65 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~---~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 141 (385)
.|++++|.++|+...+.| +...+..|...|...|+. ++|...|++..+ .+..
T Consensus 16 ~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~----------------------~~~~ 70 (452)
T 3e4b_A 16 RGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAAD----------------------TSPR 70 (452)
T ss_dssp HHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------------------------
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHh----------------------CCHH
Confidence 688999999999888775 445555666677777777 788888866543 2445
Q ss_pred hHHHHHHHHHhCC-----CchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHH
Q 040338 142 SWNTMISILTRHG-----FGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGL 216 (385)
Q Consensus 142 ~~~~li~~~~~~~-----~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 216 (385)
.+..|...+...+ ++++|+.+|++..+.|... .+..|...|...+..+.+.+.++.+.+.....+......|
T Consensus 71 A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~L 147 (452)
T 3e4b_A 71 AQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQ 147 (452)
T ss_dssp CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHH
Confidence 5666666454544 6778888888888765433 4555555555555544444444443332111123344445
Q ss_pred HHHHHhcCCCC-------------CCchhhHHHHHHHHHHcCC---ChhHHHHHHHhcccC---ChhhHHHHHHHHHhc-
Q 040338 217 IDMYLKCGCNG-------------IESSIQIGKALVTMYAEGG---STQKADLAFELMSRR---NMISWMVLISAFSQA- 276 (385)
Q Consensus 217 i~~~~~~g~~~-------------~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~- 276 (385)
...|...+..+ ...+...+..|...|.+.| +.++|+..|++..+. +...+..|...|...
T Consensus 148 g~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~ 227 (452)
T 3e4b_A 148 VLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDAT 227 (452)
T ss_dssp HHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGG
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 55555544332 2233447888889999999 899999999888653 334446677777554
Q ss_pred ---CCCCchHHHH---------HHHHHHHH-h--cccCChhhHHHHHHHHHhccchhhHHHHHHHHHccC-----CHHHH
Q 040338 277 ---GVLEKPRFFF---------FFVSLLSG-C--SHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSG-----LLGEA 336 (385)
Q Consensus 277 ---g~~~~a~~~~---------~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A 336 (385)
+++++|+..| .+..+... + ...++.++|...|++..+.+.......|...|. .| ++++|
T Consensus 228 ~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A 306 (452)
T 3e4b_A 228 LGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAA 306 (452)
T ss_dssp GSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence 5777888887 45555554 3 458999999999999999888777777888887 55 99999
Q ss_pred HHHHHhCCCCCCcchHHHHHHHHHh----cCChHHHHHHHHHHHhcccc
Q 040338 337 KKLIDEMPSKPTCVIWGALLGACCS----HYNTKLAELVMRNLLQLDVK 381 (385)
Q Consensus 337 ~~~~~~m~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~ 381 (385)
.+.|++.. ..+...+..|...|.. ..+.++|..+|++..+.|..
T Consensus 307 ~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 354 (452)
T 3e4b_A 307 EAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQN 354 (452)
T ss_dssp HHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCT
T ss_pred HHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChH
Confidence 99999999 6677788888888877 34999999999999887654
No 68
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.26 E-value=6.5e-10 Score=96.57 Aligned_cols=219 Identities=12% Similarity=0.031 Sum_probs=162.2
Q ss_pred hHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHH-------hCCCc-------hHHHHHHHHHHHC
Q 040338 104 DYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILT-------RHGFG-------FETLCTFIELWNH 169 (385)
Q Consensus 104 ~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~-------~~~~~-------~~a~~~~~~m~~~ 169 (385)
++|..+|++....+ +.+...|..+...+. +.|++ ++|..+|++..+.
T Consensus 33 ~~a~~~~~~al~~~-------------------p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~ 93 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-------------------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST 93 (308)
T ss_dssp HHHHHHHHHHHHHH-------------------TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHc-------------------CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH
Confidence 56667777665543 467778888887775 45886 8999999999873
Q ss_pred CCCC-CHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCCh
Q 040338 170 GFGL-SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGST 248 (385)
Q Consensus 170 g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~ 248 (385)
+.| +...|..+...+.+.|++++|.++|++.++.. |+.. ..+|..+...+.+.|++
T Consensus 94 -~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~--------------------~~~~~~~~~~~~~~~~~ 150 (308)
T 2ond_A 94 -LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE--DIDP--------------------TLVYIQYMKFARRAEGI 150 (308)
T ss_dssp -TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS--SSCT--------------------HHHHHHHHHHHHHHHCH
T ss_pred -hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc--ccCc--------------------cHHHHHHHHHHHHhcCH
Confidence 355 45678888889999999999999999998853 2211 01456666677777899
Q ss_pred hHHHHHHHhcccCChhhHHHHHHHHHhcCCCCchHHHHHHHHHHHH-hcccCChhhHHHHHHHHHhccc--hhhHHHHHH
Q 040338 249 QKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSG-CSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVD 325 (385)
Q Consensus 249 ~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~ 325 (385)
++|..+|++..+.+...+...+ ..... +...|+.++|..+|++..+..+ ...+..++.
T Consensus 151 ~~A~~~~~~a~~~~p~~~~~~~-------------------~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 211 (308)
T 2ond_A 151 KSGRMIFKKAREDARTRHHVYV-------------------TAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYID 211 (308)
T ss_dssp HHHHHHHHHHHTSTTCCTHHHH-------------------HHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHH-------------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 9999999998763221111111 00111 1135888899999999888777 788888999
Q ss_pred HHHccCCHHHHHHHHHhCCCC----C--CcchHHHHHHHHHhcCChHHHHHHHHHHHhccccCC
Q 040338 326 LLGLSGLLGEAKKLIDEMPSK----P--TCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVF 383 (385)
Q Consensus 326 ~~~~~g~~~~A~~~~~~m~~~----p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 383 (385)
.+.+.|++++|..+|++.... | ....|..++..+.+.|+.+.|..+++++.+..|...
T Consensus 212 ~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 212 YLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp HHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccc
Confidence 999999999999999988762 3 244788889999999999999999999998887643
No 69
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.23 E-value=7.1e-10 Score=88.30 Aligned_cols=169 Identities=9% Similarity=-0.030 Sum_probs=136.5
Q ss_pred ChhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHH
Q 040338 48 YLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIR 127 (385)
Q Consensus 48 ~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 127 (385)
++..|..+-..+.. .|++++|++.|++..+.. +-+..++..+..+|.+.|++++|...+.......
T Consensus 4 ~~~iy~~lG~~~~~---~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~---------- 69 (184)
T 3vtx_A 4 TTTIYMDIGDKKRT---KGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD---------- 69 (184)
T ss_dssp CHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----------
Confidence 45677777777666 899999999999999875 3467889999999999999999999998875544
Q ss_pred HHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCC
Q 040338 128 LLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPS 207 (385)
Q Consensus 128 a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 207 (385)
+.+...+..+...+...++++.+...+.+.... .+-+...+..+...+.+.|++++|++.+++..+..+
T Consensus 70 ---------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p- 138 (184)
T 3vtx_A 70 ---------TTSAEAYYILGSANFMIDEKQAAIDALQRAIAL-NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP- 138 (184)
T ss_dssp ---------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-
T ss_pred ---------chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-
Confidence 355667788888889999999999999998775 233567788888899999999999999999988753
Q ss_pred CchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhcccCCh
Q 040338 208 LDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNM 263 (385)
Q Consensus 208 ~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 263 (385)
.+..+|..+...|.+.|++++|+..|++..+.+.
T Consensus 139 ----------------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 172 (184)
T 3vtx_A 139 ----------------------GFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEE 172 (184)
T ss_dssp ----------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTH
T ss_pred ----------------------hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCc
Confidence 2344567778888888899999999998876443
No 70
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.22 E-value=2.2e-10 Score=105.68 Aligned_cols=212 Identities=11% Similarity=-0.038 Sum_probs=165.3
Q ss_pred CChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCCh-hHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHH
Q 040338 66 GNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAV-DYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWN 144 (385)
Q Consensus 66 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 144 (385)
..++++...++...... +.+...+..+...|...|++ ++|++.|++..+.+ +.+...|.
T Consensus 82 ~~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-------------------p~~~~a~~ 141 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-------------------PELVEAWN 141 (474)
T ss_dssp HHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-------------------TTCHHHHH
T ss_pred HHHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-------------------CCCHHHHH
Confidence 45677777777766542 34778889999999999999 99999998876655 35678999
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCc---------cCccchhhHHHHHHHhCCCCchHHHHH
Q 040338 145 TMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASV---------YDLEWGPHLHSRVVHMEPSLDVFVGSG 215 (385)
Q Consensus 145 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~ 215 (385)
.+..+|.+.|++++|...|++..+. .|+...+..+...+... |++++|++.+++.++..+. +.
T Consensus 142 ~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~----- 213 (474)
T 4abn_A 142 QLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DG----- 213 (474)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CH-----
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CH-----
Confidence 9999999999999999999999885 57778888999999999 9999999999999987532 23
Q ss_pred HHHHHHhcCCCCCCchhhHHHHHHHHHHcC--------CChhHHHHHHHhccc--C----ChhhHHHHHHHHHhcCCCCc
Q 040338 216 LIDMYLKCGCNGIESSIQIGKALVTMYAEG--------GSTQKADLAFELMSR--R----NMISWMVLISAFSQAGVLEK 281 (385)
Q Consensus 216 li~~~~~~g~~~~~~~~~~~~~li~~~~~~--------g~~~~A~~~~~~m~~--~----~~~~~~~li~~~~~~g~~~~ 281 (385)
..|..+...|... |++++|+..|++..+ | +...|.
T Consensus 214 -----------------~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~-------------- 262 (474)
T 4abn_A 214 -----------------RSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHL-------------- 262 (474)
T ss_dssp -----------------HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHH--------------
T ss_pred -----------------HHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHH--------------
Confidence 3445555666665 789999999988865 2 233343
Q ss_pred hHHHHHHHHHHHHhcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCC
Q 040338 282 PRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMP 344 (385)
Q Consensus 282 a~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 344 (385)
.+..+|...|++++|...|++..+..+ ...+..+...+...|++++|.+.+..+.
T Consensus 263 --------~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~~ 319 (474)
T 4abn_A 263 --------NRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTK 319 (474)
T ss_dssp --------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred --------HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 444455556667777788888777766 6677888888888999999988776664
No 71
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.22 E-value=2.2e-08 Score=95.49 Aligned_cols=355 Identities=11% Similarity=0.057 Sum_probs=223.2
Q ss_pred ccCCChHHHHHHHHHHHHccc-chhhHHh---------h---hhhHHHHHhhhC--C---CChhhHHHHHHHHHhhhcc-
Q 040338 5 GSLKSLPIARKIHAQLISTCL-ISSIFLQ---------L---IDDDYRVFCDIG--P---RYLFTYNTMINGGVRCLCV- 65 (385)
Q Consensus 5 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~---------~---~~~A~~~~~~~~--~---~~~~~~~~li~~~~~~~~~- 65 (385)
.+.+.++.++.++++++..-. .+..+.. + ++.+..+|++.. . |++..|...+.-..++...
T Consensus 77 ~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~ 156 (679)
T 4e6h_A 77 VSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDII 156 (679)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCST
T ss_pred HhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccc
Confidence 345789999999999998742 3333332 5 899999999765 3 7787888777654442110
Q ss_pred ----CChHHHHHHHHHHHHh-cc-CCC-chHHHhHHHHHH---------hcCChhHHHHHHHhccCCCc----cccc---
Q 040338 66 ----GNIKMALHLHGLVKKF-YF-VSD-ESIAKSSIDMHV---------KCGAVDYAESAFLRMLNPSL----FCWK--- 122 (385)
Q Consensus 66 ----~~~~~a~~~~~~m~~~-g~-~~~-~~~~~~li~~~~---------~~g~~~~a~~~~~~m~~~~~----~~~~--- 122 (385)
+..+...++|+..... |. .|+ ...|...+.... ..++++.+.++|++...... ..|.
T Consensus 157 ~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~ 236 (679)
T 4e6h_A 157 TGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYT 236 (679)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 1124455788776654 66 554 467777776654 23457788899988875321 1111
Q ss_pred -------------------cchHHHHHHhcC-------C----CC----------C--C------cchHHHHHHHHHhCC
Q 040338 123 -------------------FGIIRLLIMFQK-------M----PE----------R--D------LVSWNTMISILTRHG 154 (385)
Q Consensus 123 -------------------~~~~~a~~~~~~-------~----~~----------~--~------~~~~~~li~~~~~~~ 154 (385)
..++.|...+.+ + +. | + ...|...+..--..+
T Consensus 237 ~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~ 316 (679)
T 4e6h_A 237 QWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNK 316 (679)
T ss_dssp HHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCT
T ss_pred HHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCC
Confidence 111122222211 1 00 0 0 123444443322222
Q ss_pred C-------chHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchh-hHHHHHHHhCCCCchHHHHHHHHHHHhcCCC
Q 040338 155 F-------GFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGP-HLHSRVVHMEPSLDVFVGSGLIDMYLKCGCN 226 (385)
Q Consensus 155 ~-------~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 226 (385)
. .+.+..+|++.... ++-+...|...+..+.+.|+.++|. ++++......+
T Consensus 317 ~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P-------------------- 375 (679)
T 4e6h_A 317 LELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIP-------------------- 375 (679)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCT--------------------
T ss_pred ccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCC--------------------
Confidence 0 12344556666553 2224455555555555667777775 77777765432
Q ss_pred CCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc-------------CC------------hhhHHHHHHHHHhcCCCCc
Q 040338 227 GIESSIQIGKALVTMYAEGGSTQKADLAFELMSR-------------RN------------MISWMVLISAFSQAGVLEK 281 (385)
Q Consensus 227 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------------~~------------~~~~~~li~~~~~~g~~~~ 281 (385)
.+...|-..+...-+.|+++.|.++|+.+.+ |+ ...|...+....+.|..+.
T Consensus 376 ---~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~ 452 (679)
T 4e6h_A 376 ---NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAA 452 (679)
T ss_dssp ---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred ---CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHH
Confidence 2233445566666677888889988887764 21 1246666666677788888
Q ss_pred hHHHH-------------HHHHHHHHhcc-cCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCC
Q 040338 282 PRFFF-------------FFVSLLSGCSH-SGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPS 345 (385)
Q Consensus 282 a~~~~-------------~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 345 (385)
|..+| .|......-.+ .++.+.|..+|+...+..+ ...+..+++.....|+.+.|..+|++...
T Consensus 453 AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~ 532 (679)
T 4e6h_A 453 SRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSID 532 (679)
T ss_dssp HHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 88877 22221111222 3568999999999888776 66777888888899999999999999887
Q ss_pred C-C----CcchHHHHHHHHHhcCChHHHHHHHHHHHhccccCC
Q 040338 346 K-P----TCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVF 383 (385)
Q Consensus 346 ~-p----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 383 (385)
. | ....|...+..-.+.|+.+.+..+.+++.+..|++.
T Consensus 533 ~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 533 KISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp TSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred hcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 5 4 235788899999999999999999999999888753
No 72
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.22 E-value=6.8e-10 Score=99.36 Aligned_cols=290 Identities=11% Similarity=-0.006 Sum_probs=199.6
Q ss_pred HHHHHHHhhhccCChHHHHHHHHHHHHhc--cCCC--chHHHhHHHHHH--hcCChhHHH---------HHHHhccCCCc
Q 040338 54 TMINGGVRCLCVGNIKMALHLHGLVKKFY--FVSD--ESIAKSSIDMHV--KCGAVDYAE---------SAFLRMLNPSL 118 (385)
Q Consensus 54 ~li~~~~~~~~~~~~~~a~~~~~~m~~~g--~~~~--~~~~~~li~~~~--~~g~~~~a~---------~~~~~m~~~~~ 118 (385)
.+|.-+-.+...+++++|.++++++.+.. ...| ...|-.|+..-. -.+..+.+. ..++.+....
T Consensus 14 ~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~- 92 (378)
T 3q15_A 14 VKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQ- 92 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGG-
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccC-
Confidence 33443333344899999999999987752 2222 333444443211 112222222 4444432211
Q ss_pred cccccchHHHHHHhcCCCCC-C-cc---hHHHHHHHHHhCCCchHHHHHHHHHHHCCC-CC----CHhhHHHHHHHhcCc
Q 040338 119 FCWKFGIIRLLIMFQKMPER-D-LV---SWNTMISILTRHGFGFETLCTFIELWNHGF-GL----SSMLYATAFSARASV 188 (385)
Q Consensus 119 ~~~~~~~~~a~~~~~~~~~~-~-~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p----~~~t~~~ll~~~~~~ 188 (385)
.+ + .. .|......+...|++++|+..|++..+... .+ ...++..+...+...
T Consensus 93 ------------------~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~ 154 (378)
T 3q15_A 93 ------------------KKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHM 154 (378)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHT
T ss_pred ------------------CCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHc
Confidence 11 1 11 222344556789999999999999876421 12 245777888899999
Q ss_pred cCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc-----CC-
Q 040338 189 YDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR-----RN- 262 (385)
Q Consensus 189 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~- 262 (385)
|+++.|...+++..+......... .....+++.+...|...|++++|++.|++..+ ++
T Consensus 155 ~~~~~A~~~~~~al~~~~~~~~~~----------------~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~ 218 (378)
T 3q15_A 155 KQTHVSMYHILQALDIYQNHPLYS----------------IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQND 218 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHTSTTCH----------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred CCcHHHHHHHHHHHHHHHhCCCch----------------hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCH
Confidence 999999999998876422111000 01234567788889999999999999987764 22
Q ss_pred ---hhhHHHHHHHHHhcCCCCchHHHH-----------------HHHHHHHHhcccCChhhHHHHHHHHHhccc------
Q 040338 263 ---MISWMVLISAFSQAGVLEKPRFFF-----------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY------ 316 (385)
Q Consensus 263 ---~~~~~~li~~~~~~g~~~~a~~~~-----------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------ 316 (385)
..++..+...|...|++++|+..+ ++..+...+.+.|++++|...+++..+...
T Consensus 219 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 298 (378)
T 3q15_A 219 RFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKF 298 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSC
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 357788889999999999999888 678888999999999999999999887532
Q ss_pred -hhhHHHHHHHHHccCC---HHHHHHHHHhCCCCCC-cchHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 040338 317 -TCYFVCMVDLLGLSGL---LGEAKKLIDEMPSKPT-CVIWGALLGACCSHYNTKLAELVMRNLLQL 378 (385)
Q Consensus 317 -~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 378 (385)
...+..+...+...|+ +.+|...+++....|+ ...+..+...|...|++++|...+++..+.
T Consensus 299 ~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 299 YKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4456667777788888 9999999998654333 346678899999999999999999998754
No 73
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.19 E-value=2.4e-09 Score=92.98 Aligned_cols=217 Identities=9% Similarity=-0.065 Sum_probs=152.9
Q ss_pred hhHHHHHhhhC---CCChhhHHHHHHHHHhh----hccCCh-------HHHHHHHHHHHHhccCCCchHHHhHHHHHHhc
Q 040338 35 DDDYRVFCDIG---PRYLFTYNTMINGGVRC----LCVGNI-------KMALHLHGLVKKFYFVSDESIAKSSIDMHVKC 100 (385)
Q Consensus 35 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~----~~~~~~-------~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 100 (385)
+.|..+|++.. +.++..|..+...+... ...|++ ++|..+|++..+.-.+-+...|..++..+.+.
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 56666776554 44666777777665431 125776 89999999999831233566899999999999
Q ss_pred CChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcc-hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHH
Q 040338 101 GAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLV-SWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYA 179 (385)
Q Consensus 101 g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~ 179 (385)
|++++|.++|++..+.. +.+.. +|..+...+.+.|++++|..+|++..+.. +++...|.
T Consensus 113 ~~~~~A~~~~~~al~~~-------------------p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~ 172 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIE-------------------DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYV 172 (308)
T ss_dssp TCHHHHHHHHHHHHTSS-------------------SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHH
T ss_pred CCHHHHHHHHHHHHhcc-------------------ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHH
Confidence 99999999999987644 22343 89999999999999999999999998753 23444444
Q ss_pred HHHHH-hcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhc
Q 040338 180 TAFSA-RASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELM 258 (385)
Q Consensus 180 ~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 258 (385)
..... +...|+.++|.++|+..++..+ .+...|..++..+.+.|++++|..+|++.
T Consensus 173 ~~a~~~~~~~~~~~~A~~~~~~al~~~p-----------------------~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 229 (308)
T 2ond_A 173 TAALMEYYCSKDKSVAFKIFELGLKKYG-----------------------DIPEYVLAYIDYLSHLNEDNNTRVLFERV 229 (308)
T ss_dssp HHHHHHHHTSCCHHHHHHHHHHHHHHHT-----------------------TCHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------------------CcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 33322 2236999999999999988642 12345577777888888999999999988
Q ss_pred ccC---C----hhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcccCChhhHHHHHHHHHhccc
Q 040338 259 SRR---N----MISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTY 316 (385)
Q Consensus 259 ~~~---~----~~~~~~li~~~~~~g~~~~a~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 316 (385)
.+. + ...|..++ ......|+.+.|..+++++.+..+
T Consensus 230 l~~~~l~p~~~~~l~~~~~----------------------~~~~~~g~~~~a~~~~~~a~~~~p 272 (308)
T 2ond_A 230 LTSGSLPPEKSGEIWARFL----------------------AFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp HHSSSSCGGGCHHHHHHHH----------------------HHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred HhccCCCHHHHHHHHHHHH----------------------HHHHHcCCHHHHHHHHHHHHHHcc
Confidence 652 1 12333333 333445666777777777776655
No 74
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.18 E-value=4.7e-10 Score=103.54 Aligned_cols=207 Identities=10% Similarity=-0.100 Sum_probs=164.8
Q ss_pred hhhhHHHHHhhhC---CCChhhHHHHHHHHHhhhccCCh-HHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHH
Q 040338 33 LIDDDYRVFCDIG---PRYLFTYNTMINGGVRCLCVGNI-KMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAES 108 (385)
Q Consensus 33 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~~-~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 108 (385)
.++++...++... ..+...|..+-..+.. .|++ ++|++.|++..+.. +.+...|..+..+|.+.|++++|.+
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~---~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~ 158 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNV---TPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHT 158 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTS---SSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHh---ccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 5777777777654 2345566666666555 8999 99999999999875 3367899999999999999999999
Q ss_pred HHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhC---------CCchHHHHHHHHHHHCCCCC-CHhhH
Q 040338 109 AFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRH---------GFGFETLCTFIELWNHGFGL-SSMLY 178 (385)
Q Consensus 109 ~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~---------~~~~~a~~~~~~m~~~g~~p-~~~t~ 178 (385)
.|++..+.+ |+...+..+...+... |++++|+..|++..+. .| +...+
T Consensus 159 ~~~~al~~~--------------------p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~ 216 (474)
T 4abn_A 159 CFSGALTHC--------------------KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSW 216 (474)
T ss_dssp HHHHHHTTC--------------------CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred HHHHHHhhC--------------------CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHH
Confidence 999887654 5568888999999999 9999999999999885 44 57788
Q ss_pred HHHHHHhcCc--------cCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhH
Q 040338 179 ATAFSARASV--------YDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250 (385)
Q Consensus 179 ~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~ 250 (385)
..+..++... |++++|++.++...+..+. ...+...|..+...|...|++++
T Consensus 217 ~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--------------------~~~~~~~~~~lg~~~~~~g~~~~ 276 (474)
T 4abn_A 217 YILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRK--------------------ASSNPDLHLNRATLHKYEESYGE 276 (474)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGG--------------------GGGCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCC--------------------cccCHHHHHHHHHHHHHcCCHHH
Confidence 8899999888 9999999999999987421 00244556778888888999999
Q ss_pred HHHHHHhccc--C-ChhhHHHHHHHHHhcCCCCchHHH
Q 040338 251 ADLAFELMSR--R-NMISWMVLISAFSQAGVLEKPRFF 285 (385)
Q Consensus 251 A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~ 285 (385)
|+..|++..+ | +...+..+...+...|++++|++.
T Consensus 277 A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 277 ALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998865 3 456677777777777777766544
No 75
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.17 E-value=3.1e-10 Score=90.09 Aligned_cols=152 Identities=11% Similarity=-0.060 Sum_probs=132.9
Q ss_pred hhHHHHHHHHHHcCCChhHHHHHHHhccc---CChhhHHHHHHHHHhcCCCCchHHHH------------HHHHHHHHhc
Q 040338 232 IQIGKALVTMYAEGGSTQKADLAFELMSR---RNMISWMVLISAFSQAGVLEKPRFFF------------FFVSLLSGCS 296 (385)
Q Consensus 232 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~------------~~~~l~~~~~ 296 (385)
...+..+...+...|++++|...++++.+ .+...+..+...+...|++++|...+ .+..+...+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 34567778888889999999999998876 36678888999999999999999988 7888888999
Q ss_pred ccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCC--CCcchHHHHHHHHHhcCChHHHHHHH
Q 040338 297 HSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK--PTCVIWGALLGACCSHYNTKLAELVM 372 (385)
Q Consensus 297 ~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--p~~~~~~~li~~~~~~g~~~~a~~~~ 372 (385)
..|++++|.+.++++.+..+ ...+..+...+...|++++|.+.+++.... .+...+..+...|...|++++|...+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999988776 778888999999999999999999988663 35678899999999999999999999
Q ss_pred HHHHhccccCC
Q 040338 373 RNLLQLDVKVF 383 (385)
Q Consensus 373 ~~~~~~~~~~~ 383 (385)
++..+..|.++
T Consensus 168 ~~~~~~~~~~~ 178 (186)
T 3as5_A 168 KKANELDEGAS 178 (186)
T ss_dssp HHHHHHHHCCC
T ss_pred HHHHHcCCCch
Confidence 99998877654
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.14 E-value=3.8e-09 Score=94.52 Aligned_cols=219 Identities=8% Similarity=-0.021 Sum_probs=162.9
Q ss_pred HHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCC--CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCC
Q 040338 93 SIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE--RDLVSWNTMISILTRHGFGFETLCTFIELWNHG 170 (385)
Q Consensus 93 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 170 (385)
....+...|++++|...|++..+.. ...+. ....++..+...|...|++++|...+++..+..
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~---------------~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~ 171 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKEL---------------PFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIY 171 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTG---------------GGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHH---------------hhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 4455677899999999998765432 22211 124578888899999999999999999876531
Q ss_pred -----CCC-CHhhHHHHHHHhcCccCccchhhHHHHHHHhCCC-CchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHH
Q 040338 171 -----FGL-SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPS-LDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYA 243 (385)
Q Consensus 171 -----~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~ 243 (385)
..+ ...++..+..++...|++++|.+.++...+.... ++.. ....++..+...|.
T Consensus 172 ~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~------------------~~~~~~~~lg~~y~ 233 (378)
T 3q15_A 172 QNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDR------------------FIAISLLNIANSYD 233 (378)
T ss_dssp HTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH------------------HHHHHHHHHHHHHH
T ss_pred HhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHH------------------HHHHHHHHHHHHHH
Confidence 122 2457778888999999999999999988764211 1111 12245677888888
Q ss_pred cCCChhHHHHHHHhccc-----C---ChhhHHHHHHHHHhcCCCCchHHHH-----------------HHHHHHHHhccc
Q 040338 244 EGGSTQKADLAFELMSR-----R---NMISWMVLISAFSQAGVLEKPRFFF-----------------FFVSLLSGCSHS 298 (385)
Q Consensus 244 ~~g~~~~A~~~~~~m~~-----~---~~~~~~~li~~~~~~g~~~~a~~~~-----------------~~~~l~~~~~~~ 298 (385)
..|++++|+..|++..+ . ...++..+...|.+.|++++|...+ .+..+...+...
T Consensus 234 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~ 313 (378)
T 3q15_A 234 RSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKET 313 (378)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSS
T ss_pred HCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCC
Confidence 99999999999987765 2 2456777888999999999999888 566677777788
Q ss_pred CC---hhhHHHHHHHHHhccc-hhhHHHHHHHHHccCCHHHHHHHHHhCC
Q 040338 299 GP---VTKGKHYFTAMAKFTY-TCYFVCMVDLLGLSGLLGEAKKLIDEMP 344 (385)
Q Consensus 299 ~~---~~~a~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 344 (385)
++ +.+|...++....... ...+..+...|...|++++|.+.|++..
T Consensus 314 ~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 314 VDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 88 7888888877433333 6677789999999999999999998764
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.12 E-value=2.3e-09 Score=84.88 Aligned_cols=154 Identities=11% Similarity=-0.014 Sum_probs=117.5
Q ss_pred chHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHH
Q 040338 87 ESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIEL 166 (385)
Q Consensus 87 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 166 (385)
...+..+...+...|++++|.+.|+++.+.+ +.+..++..+...+...|++++|...++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 68 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-------------------AFDVDVALHLGIAYVKTGAVDRGTELLERS 68 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-------------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------------------ccChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3567778888999999999999998887655 356778889999999999999999999999
Q ss_pred HHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCC
Q 040338 167 WNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGG 246 (385)
Q Consensus 167 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g 246 (385)
.+. .+.+...+..+...+...|++++|.+.++.+.+.... +...+..+...+...|
T Consensus 69 ~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-----------------------~~~~~~~~a~~~~~~~ 124 (186)
T 3as5_A 69 LAD-APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPI-----------------------NFNVRFRLGVALDNLG 124 (186)
T ss_dssp HHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-----------------------CHHHHHHHHHHHHHTT
T ss_pred Hhc-CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcH-----------------------hHHHHHHHHHHHHHcC
Confidence 875 2336778888888999999999999999999887431 2334566777788888
Q ss_pred ChhHHHHHHHhccc--C-ChhhHHHHHHHHHhcCCCCchH
Q 040338 247 STQKADLAFELMSR--R-NMISWMVLISAFSQAGVLEKPR 283 (385)
Q Consensus 247 ~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~ 283 (385)
++++|...+++..+ | +...+..+...+...|++++|.
T Consensus 125 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 125 RFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 99999999988765 2 3344545555554444444443
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.09 E-value=7.6e-08 Score=85.71 Aligned_cols=285 Identities=8% Similarity=-0.079 Sum_probs=176.2
Q ss_pred hhhhHHHHHhhhC----CCChh----hHHHHHHHHHhhhccCChHHHHHHHHHHHHhccC-CC----chHHHhHHHHHHh
Q 040338 33 LIDDDYRVFCDIG----PRYLF----TYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFV-SD----ESIAKSSIDMHVK 99 (385)
Q Consensus 33 ~~~~A~~~~~~~~----~~~~~----~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~-~~----~~~~~~li~~~~~ 99 (385)
++++|...+++.. ..+.. .++.+-..+.. .|++++|...+++..+.... ++ ..++..+...+..
T Consensus 29 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 105 (373)
T 1hz4_A 29 NPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHC---KGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA 105 (373)
T ss_dssp CHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHh---cCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 6667766666432 22222 23444444444 79999999999998764221 12 2335667788899
Q ss_pred cCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCC---C-CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCC--C
Q 040338 100 CGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE---R-DLVSWNTMISILTRHGFGFETLCTFIELWNHGFG--L 173 (385)
Q Consensus 100 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p 173 (385)
.|++++|...+++..+ ...+... | ...++..+...+...|++++|...+++....... +
T Consensus 106 ~G~~~~A~~~~~~al~---------------~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 170 (373)
T 1hz4_A 106 QGFLQTAWETQEKAFQ---------------LINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP 170 (373)
T ss_dssp TTCHHHHHHHHHHHHH---------------HHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG
T ss_pred CCCHHHHHHHHHHHHH---------------HHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCc
Confidence 9999999999976532 2222222 2 2345667788899999999999999998764321 1
Q ss_pred --CHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCch-HHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhH
Q 040338 174 --SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDV-FVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250 (385)
Q Consensus 174 --~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~ 250 (385)
...++..+...+...|++++|...+++.......++. ..+... .....+..+...|++++
T Consensus 171 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~g~~~~ 233 (373)
T 1hz4_A 171 QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN-----------------ANKVRVIYWQMTGDKAA 233 (373)
T ss_dssp GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH-----------------HHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHH-----------------HHHHHHHHHHHCCCHHH
Confidence 2356777888899999999999999998765322211 111000 01123345678899999
Q ss_pred HHHHHHhcccCChhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcccCChhhHHHHHHHHHhccc--------hhhHHH
Q 040338 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--------TCYFVC 322 (385)
Q Consensus 251 A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~ 322 (385)
|...++...+++... . ......+..+...+...|++++|...++....... ...+..
T Consensus 234 A~~~~~~a~~~~~~~-------------~--~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~ 298 (373)
T 1hz4_A 234 AANWLRHTAKPEFAN-------------N--HFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLL 298 (373)
T ss_dssp HHHHHHHSCCCCCTT-------------C--GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCCc-------------c--hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 999999887643110 0 00000122334444555566666666665544321 235556
Q ss_pred HHHHHHccCCHHHHHHHHHhCCCC-----------CCcchHHHHHHHHHhcCChHH
Q 040338 323 MVDLLGLSGLLGEAKKLIDEMPSK-----------PTCVIWGALLGACCSHYNTKL 367 (385)
Q Consensus 323 li~~~~~~g~~~~A~~~~~~m~~~-----------p~~~~~~~li~~~~~~g~~~~ 367 (385)
+..++...|+.++|...+++.... ........++..+......++
T Consensus 299 la~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~~~~g~~~~~ll~~~~~~~~~~~ 354 (373)
T 1hz4_A 299 LNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPE 354 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHhccccHHHHHHHccHHHHHHHHHHHhCCCCch
Confidence 677788889999888888776541 112234567777777777633
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.09 E-value=1.7e-08 Score=89.88 Aligned_cols=265 Identities=12% Similarity=-0.006 Sum_probs=182.3
Q ss_pred cCChHHHHHHHHHHHHhccCCCch----HHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCC--
Q 040338 65 VGNIKMALHLHGLVKKFYFVSDES----IAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPER-- 138 (385)
Q Consensus 65 ~~~~~~a~~~~~~m~~~g~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~-- 138 (385)
.|++++|...+++..+.....+.. +++.+...+...|++++|.+.+++.... ......+
T Consensus 27 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---------------~~~~~~~~~ 91 (373)
T 1hz4_A 27 DGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQM---------------ARQHDVWHY 91 (373)
T ss_dssp TTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---------------HHHTTCHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH---------------HHhcCcHHH
Confidence 799999999999988764222222 4666778888899999999999775432 1221111
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHHC----CCC--C-CHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchH
Q 040338 139 DLVSWNTMISILTRHGFGFETLCTFIELWNH----GFG--L-SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVF 211 (385)
Q Consensus 139 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~--p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 211 (385)
...+++.+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++...........
T Consensus 92 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 171 (373)
T 1hz4_A 92 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ 171 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcH
Confidence 1234567778899999999999999988653 222 3 23456677788899999999999999988765432110
Q ss_pred HHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc----CCh-hhHHHHHHHHHhcCCCCchHHHH
Q 040338 212 VGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR----RNM-ISWMVLISAFSQAGVLEKPRFFF 286 (385)
Q Consensus 212 ~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~-~~~~~li~~~~~~g~~~~a~~~~ 286 (385)
....++..+...+...|++++|...+++... ++. ..+...
T Consensus 172 ------------------~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~----------------- 216 (373)
T 1hz4_A 172 ------------------QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN----------------- 216 (373)
T ss_dssp ------------------GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH-----------------
T ss_pred ------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHH-----------------
Confidence 1123556777888889999999999987653 111 011100
Q ss_pred HHHHHHHHhcccCChhhHHHHHHHHHhccc------hhhHHHHHHHHHccCCHHHHHHHHHhCCCC----C---Cc-chH
Q 040338 287 FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY------TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK----P---TC-VIW 352 (385)
Q Consensus 287 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----p---~~-~~~ 352 (385)
.....+..+...|+.++|...++....... ...+..+...+...|++++|...+++.... + +. ..+
T Consensus 217 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~ 296 (373)
T 1hz4_A 217 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNL 296 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 111223335567777777777777665433 224567788899999999999999887542 1 12 256
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcc
Q 040338 353 GALLGACCSHYNTKLAELVMRNLLQLD 379 (385)
Q Consensus 353 ~~li~~~~~~g~~~~a~~~~~~~~~~~ 379 (385)
..+..++...|+.++|...+++.....
T Consensus 297 ~~la~~~~~~g~~~~A~~~l~~al~~~ 323 (373)
T 1hz4_A 297 LLLNQLYWQAGRKSDAQRVLLDALKLA 323 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 677888999999999999999887543
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.08 E-value=5.6e-10 Score=107.51 Aligned_cols=151 Identities=13% Similarity=0.065 Sum_probs=136.9
Q ss_pred chhhHHHHHHHHHHcCCChhHHHHHHHhccc--C-ChhhHHHHHHHHHhcCCCCchHHHH------------HHHHHHHH
Q 040338 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSR--R-NMISWMVLISAFSQAGVLEKPRFFF------------FFVSLLSG 294 (385)
Q Consensus 230 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~------------~~~~l~~~ 294 (385)
.+..+++.|...|.+.|++++|+..|++..+ | +..+|+.+..+|.+.|++++|++.| +|..+..+
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3567889999999999999999999998876 4 5789999999999999999999999 89999999
Q ss_pred hcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCC-CC-CcchHHHHHHHHHhcCChHHHHH
Q 040338 295 CSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPS-KP-TCVIWGALLGACCSHYNTKLAEL 370 (385)
Q Consensus 295 ~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~p-~~~~~~~li~~~~~~g~~~~a~~ 370 (385)
+...|++++|.+.|++..+..+ ...+..+...|.+.|++++|++.|++..+ .| +...|..+..+|...|++++|.+
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~ 166 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDE 166 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHH
Confidence 9999999999999999999887 88899999999999999999999998876 35 46689999999999999999999
Q ss_pred HHHHHHhccc
Q 040338 371 VMRNLLQLDV 380 (385)
Q Consensus 371 ~~~~~~~~~~ 380 (385)
.++++.+..+
T Consensus 167 ~~~kal~l~~ 176 (723)
T 4gyw_A 167 RMKKLVSIVA 176 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhCh
Confidence 9999876543
No 81
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.07 E-value=4e-09 Score=89.64 Aligned_cols=238 Identities=12% Similarity=-0.032 Sum_probs=151.0
Q ss_pred cCChHHHHHHHHHHHHh-------ccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCC
Q 040338 65 VGNIKMALHLHGLVKKF-------YFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137 (385)
Q Consensus 65 ~~~~~~a~~~~~~m~~~-------g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~ 137 (385)
.|++++|...+++..+. ..+....++..+...|...|++++|...+++..+.. .+.+..-.+
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----------~~~~~~~~~ 82 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIR-----------EKTLGKDHP 82 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----------HHHTCTTCH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH-----------HHHcCCcch
Confidence 57777777777776653 112346778889999999999999999997764321 000001112
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHHHHC------CCCC-CHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCch
Q 040338 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNH------GFGL-SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDV 210 (385)
Q Consensus 138 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 210 (385)
....++..+...|...|++++|...|++..+. .-.| ...++..+...+...|++++|...+++..+..
T Consensus 83 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----- 157 (283)
T 3edt_B 83 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIY----- 157 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----
Confidence 34568889999999999999999999998764 1123 46678889999999999999999999988751
Q ss_pred HHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhcccC------------ChhhHHHHHHHHHhcCC
Q 040338 211 FVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRR------------NMISWMVLISAFSQAGV 278 (385)
Q Consensus 211 ~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------------~~~~~~~li~~~~~~g~ 278 (385)
.+....+.+....++..+...|...|++++|...+++..+. ....+..+...+...+.
T Consensus 158 ----------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (283)
T 3edt_B 158 ----------ATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDK 227 (283)
T ss_dssp ----------HHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCC
T ss_pred ----------HHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCc
Confidence 00000001123446677888888999999999999887641 11233333333333333
Q ss_pred CCchHHHHHHHHHHHHhcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCC
Q 040338 279 LEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMP 344 (385)
Q Consensus 279 ~~~a~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 344 (385)
...+. .+..+...++......+ ...+..+...|...|++++|.+.|++..
T Consensus 228 ~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 279 (283)
T 3edt_B 228 RRDSA----------------PYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCAS 279 (283)
T ss_dssp CCC----------------------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHHH----------------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33221 22333333333322222 5667778888888888888888887654
No 82
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.07 E-value=3e-09 Score=90.45 Aligned_cols=152 Identities=11% Similarity=-0.082 Sum_probs=113.2
Q ss_pred hhHHHHHhhhCCCC----hhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhc------c-CCCchHHHhHHHHHHhcCCh
Q 040338 35 DDDYRVFCDIGPRY----LFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFY------F-VSDESIAKSSIDMHVKCGAV 103 (385)
Q Consensus 35 ~~A~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g------~-~~~~~~~~~li~~~~~~g~~ 103 (385)
++|..+++++..++ ..++..+-..+.. .|++++|...+++..+.. - +....++..+...|...|++
T Consensus 25 ~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 101 (283)
T 3edt_B 25 KQALEDLEKTSGHDHPDVATMLNILALVYRD---QNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKY 101 (283)
T ss_dssp HHHHHHHHHHHCSSSHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH---cccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccH
Confidence 33444444443333 3456666666655 899999999999998752 1 22456788999999999999
Q ss_pred hHHHHHHHhccCCCccccccchHHHHHHhcCCC----CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHC------CCCC
Q 040338 104 DYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMP----ERDLVSWNTMISILTRHGFGFETLCTFIELWNH------GFGL 173 (385)
Q Consensus 104 ~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p 173 (385)
++|.+.|++..+. +.+.. +....++..+...|...|++++|...|++..+. +-.|
T Consensus 102 ~~A~~~~~~al~~---------------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 166 (283)
T 3edt_B 102 KEAEPLCKRALEI---------------REKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDP 166 (283)
T ss_dssp HHHHHHHHHHHHH---------------HHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHHHH---------------HHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 9999999776432 22111 223567888999999999999999999998775 2234
Q ss_pred -CHhhHHHHHHHhcCccCccchhhHHHHHHHh
Q 040338 174 -SSMLYATAFSARASVYDLEWGPHLHSRVVHM 204 (385)
Q Consensus 174 -~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 204 (385)
...++..+...+...|++++|...+++..+.
T Consensus 167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 167 NVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3567888999999999999999999998874
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.03 E-value=5.4e-09 Score=86.30 Aligned_cols=153 Identities=8% Similarity=-0.081 Sum_probs=132.8
Q ss_pred hhhHHHHHHHHHHcCCChhHHHHHHHhccc----CChhhHHHHHHHHHhcCCCCchHHHH------------HHHHHHHH
Q 040338 231 SIQIGKALVTMYAEGGSTQKADLAFELMSR----RNMISWMVLISAFSQAGVLEKPRFFF------------FFVSLLSG 294 (385)
Q Consensus 231 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~a~~~~------------~~~~l~~~ 294 (385)
+...+......+...|++++|+..|++..+ ++...+..+..++...|++++|+..+ ++..+...
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 446677888889999999999999998765 56677777899999999999999998 88899999
Q ss_pred hcccCChhhHHHHHHHHHhccc--h-------hhHHHHHHHHHccCCHHHHHHHHHhCCCC-CC---cchHHHHHHHHHh
Q 040338 295 CSHSGPVTKGKHYFTAMAKFTY--T-------CYFVCMVDLLGLSGLLGEAKKLIDEMPSK-PT---CVIWGALLGACCS 361 (385)
Q Consensus 295 ~~~~~~~~~a~~~~~~~~~~~~--~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p~---~~~~~~li~~~~~ 361 (385)
+...|++++|...+++..+..+ . ..+..+...+...|++++|++.|++..+. |+ ...|..+...|..
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 165 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYN 165 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Confidence 9999999999999999998777 3 55888888999999999999999999874 65 4678888888888
Q ss_pred cCCh---------------------------HHHHHHHHHHHhccccCC
Q 040338 362 HYNT---------------------------KLAELVMRNLLQLDVKVF 383 (385)
Q Consensus 362 ~g~~---------------------------~~a~~~~~~~~~~~~~~~ 383 (385)
.|+. ++|+..+++..+..|.+.
T Consensus 166 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~ 214 (228)
T 4i17_A 166 NGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRT 214 (228)
T ss_dssp HHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCH
Confidence 8888 899999999999888653
No 84
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.01 E-value=7.7e-09 Score=99.62 Aligned_cols=164 Identities=10% Similarity=-0.036 Sum_probs=128.4
Q ss_pred hhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHH
Q 040338 49 LFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRL 128 (385)
Q Consensus 49 ~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a 128 (385)
..+|+.+-..+.. .|++++|++.|++..+.. +-+...|..+..+|.+.|++++|++.|++..+.+
T Consensus 9 a~al~nLG~~~~~---~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~----------- 73 (723)
T 4gyw_A 9 ADSLNNLANIKRE---QGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS----------- 73 (723)
T ss_dssp HHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------
Confidence 4567777777666 899999999999988864 2356788888899999999999999988876544
Q ss_pred HHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-CHhhHHHHHHHhcCccCccchhhHHHHHHHhCCC
Q 040338 129 LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGL-SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPS 207 (385)
Q Consensus 129 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 207 (385)
+.+...|+.+..+|.+.|++++|++.|++..+. .| +...|..+..++.+.|++++|++.|++.++..+.
T Consensus 74 --------P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~ 143 (723)
T 4gyw_A 74 --------PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD 143 (723)
T ss_dssp --------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC
T ss_pred --------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 345778888889999999999999999888774 45 5678888888888999999999999988876531
Q ss_pred CchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc
Q 040338 208 LDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR 260 (385)
Q Consensus 208 ~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 260 (385)
+...+..+...+...|++++|.+.+++..+
T Consensus 144 -----------------------~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 144 -----------------------FPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp -----------------------CHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred -----------------------ChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 234456777777778888888888877653
No 85
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.98 E-value=1.4e-08 Score=75.56 Aligned_cols=132 Identities=12% Similarity=0.063 Sum_probs=110.2
Q ss_pred hHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHH
Q 040338 51 TYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLI 130 (385)
Q Consensus 51 ~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~ 130 (385)
.|..+...+.. .|++++|..+++.+.+.+ +.+...+..+...+...|++++|...|+++.+.+
T Consensus 3 ~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------------- 65 (136)
T 2fo7_A 3 AWYNLGNAYYK---QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD------------- 65 (136)
T ss_dssp HHHHHHHHHHH---HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHH---cCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-------------
Confidence 45666677666 799999999999998875 3467788889999999999999999998876544
Q ss_pred HhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCC
Q 040338 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEP 206 (385)
Q Consensus 131 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 206 (385)
+.+...+..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++.+.+..+
T Consensus 66 ------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 66 ------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp ------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred ------CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 3566788889999999999999999999998753 33577888899999999999999999999887653
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.96 E-value=1.1e-08 Score=88.02 Aligned_cols=210 Identities=13% Similarity=0.038 Sum_probs=129.5
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHC----CCCCC-HhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHH
Q 040338 142 SWNTMISILTRHGFGFETLCTFIELWNH----GFGLS-SMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGL 216 (385)
Q Consensus 142 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 216 (385)
.|+.....|...|++++|...|++..+. |-.++ ..+|+.+..+|.+.|++++|+..++..++.
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l------------ 106 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI------------ 106 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------------
Confidence 3555566677777777777777666442 22222 456667777777777777777777766543
Q ss_pred HHHHHhcCCCCCCchhhHHHHHHHHHHcC-CChhHHHHHHHhcccCChhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHh
Q 040338 217 IDMYLKCGCNGIESSIQIGKALVTMYAEG-GSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGC 295 (385)
Q Consensus 217 i~~~~~~g~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~l~~~~ 295 (385)
+.+.|+ ......+++.+...|... |++++|+..|++..+- +-..++. ....-++..+...+
T Consensus 107 ---~~~~g~--~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~-----------~~~~~~~--~~~~~~~~~lg~~~ 168 (292)
T 1qqe_A 107 ---FTHRGQ--FRRGANFKFELGEILENDLHDYAKAIDCYELAGEW-----------YAQDQSV--ALSNKCFIKCADLK 168 (292)
T ss_dssp ---HHHTTC--HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-----------HHHTTCH--HHHHHHHHHHHHHH
T ss_pred ---HHHcCC--HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH-----------HHhCCCh--HHHHHHHHHHHHHH
Confidence 112221 011234666677777774 7777777777665431 0001100 00000456667777
Q ss_pred cccCChhhHHHHHHHHHhccc--h-------hhHHHHHHHHHccCCHHHHHHHHHhCCCC-CCcc------hHHHHHHHH
Q 040338 296 SHSGPVTKGKHYFTAMAKFTY--T-------CYFVCMVDLLGLSGLLGEAKKLIDEMPSK-PTCV------IWGALLGAC 359 (385)
Q Consensus 296 ~~~~~~~~a~~~~~~~~~~~~--~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p~~~------~~~~li~~~ 359 (385)
...|++++|...|++..+..+ . ..+..+..++...|++++|...|++...- |+.. .+..++.+|
T Consensus 169 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~ 248 (292)
T 1qqe_A 169 ALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAV 248 (292)
T ss_dssp HHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH
Confidence 788888888899998887665 1 14677788899999999999999998763 4322 344556666
Q ss_pred H--hcCChHHHHHHHHHHHhcccc
Q 040338 360 C--SHYNTKLAELVMRNLLQLDVK 381 (385)
Q Consensus 360 ~--~~g~~~~a~~~~~~~~~~~~~ 381 (385)
. ..+++++|+..|+++...+|.
T Consensus 249 ~~~~~~~~~~A~~~~~~~~~l~~~ 272 (292)
T 1qqe_A 249 NEGDSEQLSEHCKEFDNFMRLDKW 272 (292)
T ss_dssp HTTCTTTHHHHHHHHTTSSCCCHH
T ss_pred HcCCHHHHHHHHHHhccCCccHHH
Confidence 5 456788999988887766653
No 87
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.96 E-value=3.7e-08 Score=81.19 Aligned_cols=186 Identities=10% Similarity=-0.094 Sum_probs=134.6
Q ss_pred ChhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHH
Q 040338 48 YLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIR 127 (385)
Q Consensus 48 ~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 127 (385)
|+..|...-..+.. .|++++|...|+...+...+++...+..+..++...|++++|++.|++..+.+
T Consensus 6 ~~~~~~~~g~~~~~---~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---------- 72 (228)
T 4i17_A 6 DPNQLKNEGNDALN---AKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN---------- 72 (228)
T ss_dssp CHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT----------
T ss_pred CHHHHHHHHHHHHH---ccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC----------
Confidence 45556556566555 89999999999999988654677888889999999999999999999887655
Q ss_pred HHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-CH-------hhHHHHHHHhcCccCccchhhHHH
Q 040338 128 LLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGL-SS-------MLYATAFSARASVYDLEWGPHLHS 199 (385)
Q Consensus 128 a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~-------~t~~~ll~~~~~~~~~~~a~~~~~ 199 (385)
+.+..+|..+...+...|++++|+..|++..+. .| +. ..|..+-..+...|++++|++.++
T Consensus 73 ---------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~ 141 (228)
T 4i17_A 73 ---------YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYK 141 (228)
T ss_dssp ---------CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---------cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHH
Confidence 356778999999999999999999999999875 34 33 457777788889999999999999
Q ss_pred HHHHhCCCC--chHHHHHHHHHHHhcCCCC-------CCchhhHHHHHHHHHHcCCChhHHHHHHHhccc
Q 040338 200 RVVHMEPSL--DVFVGSGLIDMYLKCGCNG-------IESSIQIGKALVTMYAEGGSTQKADLAFELMSR 260 (385)
Q Consensus 200 ~~~~~~~~~--~~~~~~~li~~~~~~g~~~-------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 260 (385)
..++..+ . +...+..+..+|...|+.- ...+...|.... ....+.+++|+..|++..+
T Consensus 142 ~al~~~p-~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 142 HATDVTS-KKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHTTSSC-HHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCC-CcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhh
Confidence 9987632 2 2456666666666555220 001111222211 1223445778888877754
No 88
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.90 E-value=2.3e-08 Score=74.40 Aligned_cols=130 Identities=14% Similarity=0.062 Sum_probs=105.4
Q ss_pred hHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHH
Q 040338 88 SIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELW 167 (385)
Q Consensus 88 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 167 (385)
..|..+...+...|++++|..+|+++.+.+ +.+...+..+...+...|++++|..+++++.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 62 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-------------------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 62 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcC-------------------CcchhHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 357788889999999999999998876544 3566788888999999999999999999998
Q ss_pred HCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCC
Q 040338 168 NHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGS 247 (385)
Q Consensus 168 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~ 247 (385)
..+ +.+...+..+...+...|++++|.+.++.+.+..+. +...+..+...+.+.|+
T Consensus 63 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----------------------~~~~~~~la~~~~~~~~ 118 (136)
T 2fo7_A 63 ELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-----------------------SAEAWYNLGNAYYKQGD 118 (136)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-----------------------CHHHHHHHHHHHHTTTC
T ss_pred HHC-CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-----------------------ChHHHHHHHHHHHHHcc
Confidence 763 335677888888999999999999999999887532 22344667777888889
Q ss_pred hhHHHHHHHhccc
Q 040338 248 TQKADLAFELMSR 260 (385)
Q Consensus 248 ~~~A~~~~~~m~~ 260 (385)
+++|...++++.+
T Consensus 119 ~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 119 YDEAIEYYQKALE 131 (136)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 9999999988764
No 89
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.83 E-value=3.6e-08 Score=83.14 Aligned_cols=153 Identities=13% Similarity=-0.059 Sum_probs=124.9
Q ss_pred hhhHHHHHHHHHHcCCChhHHHHHHHhccc--C-C---hhhHHHHHHHHHhcCCCCchHHHH---------------HHH
Q 040338 231 SIQIGKALVTMYAEGGSTQKADLAFELMSR--R-N---MISWMVLISAFSQAGVLEKPRFFF---------------FFV 289 (385)
Q Consensus 231 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~---~~~~~~li~~~~~~g~~~~a~~~~---------------~~~ 289 (385)
+...+-.+...+.+.|++++|+..|+.+.+ | + ...+..+..+|.+.|++++|+..+ ++.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 445566777888899999999999999876 3 3 467788889999999999999988 566
Q ss_pred HHHHHhcc--------cCChhhHHHHHHHHHhccc--hhhH-----------------HHHHHHHHccCCHHHHHHHHHh
Q 040338 290 SLLSGCSH--------SGPVTKGKHYFTAMAKFTY--TCYF-----------------VCMVDLLGLSGLLGEAKKLIDE 342 (385)
Q Consensus 290 ~l~~~~~~--------~~~~~~a~~~~~~~~~~~~--~~~~-----------------~~li~~~~~~g~~~~A~~~~~~ 342 (385)
.+..++.. .|++++|...|+++.+..+ .... ..+...|.+.|++++|+..|++
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 173 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEA 173 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 67777777 9999999999999998777 3333 4568889999999999999999
Q ss_pred CCCC-CC----cchHHHHHHHHHhc----------CChHHHHHHHHHHHhccccCC
Q 040338 343 MPSK-PT----CVIWGALLGACCSH----------YNTKLAELVMRNLLQLDVKVF 383 (385)
Q Consensus 343 m~~~-p~----~~~~~~li~~~~~~----------g~~~~a~~~~~~~~~~~~~~~ 383 (385)
+... |+ ...+..+..+|... |++++|...++++.+..|..+
T Consensus 174 ~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 174 VFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence 8763 54 34677788888866 889999999999999887653
No 90
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.81 E-value=1.1e-07 Score=78.20 Aligned_cols=181 Identities=9% Similarity=-0.060 Sum_probs=113.9
Q ss_pred HHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHh
Q 040338 178 YATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257 (385)
Q Consensus 178 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 257 (385)
+..+...+.+.|++++|+..|+.+++..+... .....+..+..+|.+.|++++|+..|++
T Consensus 7 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~--------------------~~~~a~~~lg~~~~~~~~~~~A~~~~~~ 66 (225)
T 2yhc_A 7 IYATAQQKLQDGNWRQAITQLEALDNRYPFGP--------------------YSQQVQLDLIYAYYKNADLPLAQAAIDR 66 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST--------------------THHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh--------------------HHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 33444556666777777777777766543211 0112334556666677777777777777
Q ss_pred ccc--CCh----hhHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcccCChhhHHHHHHHHHhccc--hhhH---------
Q 040338 258 MSR--RNM----ISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYF--------- 320 (385)
Q Consensus 258 m~~--~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~--------- 320 (385)
..+ |+. ..+..+..++...|.. +.. .|..+...+...|+.++|...|+++.+..+ ....
T Consensus 67 ~l~~~P~~~~~~~a~~~~g~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~ 142 (225)
T 2yhc_A 67 FIRLNPTHPNIDYVMYMRGLTNMALDDS--ALQ--GFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFL 142 (225)
T ss_dssp HHHHCTTCTTHHHHHHHHHHHHHHHHC------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHH
T ss_pred HHHHCcCCCcHHHHHHHHHHHHHhhhhh--hhh--hhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHH
Confidence 764 322 1344444444443321 100 223334445567788888888888888766 2222
Q ss_pred --------HHHHHHHHccCCHHHHHHHHHhCCCC-CCc----chHHHHHHHHHhcCChHHHHHHHHHHHhccccC
Q 040338 321 --------VCMVDLLGLSGLLGEAKKLIDEMPSK-PTC----VIWGALLGACCSHYNTKLAELVMRNLLQLDVKV 382 (385)
Q Consensus 321 --------~~li~~~~~~g~~~~A~~~~~~m~~~-p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 382 (385)
..+...|.+.|++++|+..|+++.+. |+. ..+..+..+|.+.|+.++|.+.++.+...+|..
T Consensus 143 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 143 KDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 24566788999999999999998764 553 468889999999999999999999999887764
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.80 E-value=5.3e-07 Score=76.74 Aligned_cols=199 Identities=10% Similarity=0.022 Sum_probs=134.7
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHH
Q 040338 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLI 217 (385)
Q Consensus 138 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 217 (385)
|....+..+...+ ..+ |+..|++....+ .++..++..+..++...|++++|++++...+..+..+
T Consensus 69 ~~~~a~~~la~~~-~~~----a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~--------- 133 (310)
T 3mv2_B 69 KLGKVLDLYVQFL-DTK----NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAE--------- 133 (310)
T ss_dssp TTHHHHHHHHHHH-TTT----CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCST---------
T ss_pred HHHHHHHHHHHHh-ccc----HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc---------
Confidence 4444444444433 322 678888777654 4566666678888899999999999999886665321
Q ss_pred HHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhcccCC-------hhhHHHHHHHHHhcCCCCchHHHHHHHH
Q 040338 218 DMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRN-------MISWMVLISAFSQAGVLEKPRFFFFFVS 290 (385)
Q Consensus 218 ~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-------~~~~~~li~~~~~~g~~~~a~~~~~~~~ 290 (385)
-+...+..++..+.+.|+.+.|.+.+++|.+.+ ..+...|+.+++..
T Consensus 134 ------------~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l-------------- 187 (310)
T 3mv2_B 134 ------------GTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKF-------------- 187 (310)
T ss_dssp ------------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--------------
T ss_pred ------------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHH--------------
Confidence 133445677788888889999999999997622 34444555553221
Q ss_pred HHHHhcccCChhhHHHHHHHHHhccc-hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-----------C-CcchHHHHHH
Q 040338 291 LLSGCSHSGPVTKGKHYFTAMAKFTY-TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-----------P-TCVIWGALLG 357 (385)
Q Consensus 291 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----------p-~~~~~~~li~ 357 (385)
....++...|..+|+++....+ ......++.++.+.|++++|.+.++.+.+. | |..+...+|.
T Consensus 188 ----~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~ 263 (310)
T 3mv2_B 188 ----ATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQIT 263 (310)
T ss_dssp ----HHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHH
T ss_pred ----HhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHH
Confidence 1112356777888999877765 234445555889999999999999876541 3 4556656666
Q ss_pred HHHhcCChHHHHHHHHHHHhccccCC
Q 040338 358 ACCSHYNTKLAELVMRNLLQLDVKVF 383 (385)
Q Consensus 358 ~~~~~g~~~~a~~~~~~~~~~~~~~~ 383 (385)
.....|+ +|.++++++++..|..+
T Consensus 264 l~~~lgk--~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 264 LALMQGL--DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp HHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred HHHHhCh--HHHHHHHHHHHhCCCCh
Confidence 6666676 88999999998887654
No 92
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.80 E-value=5.5e-08 Score=83.59 Aligned_cols=143 Identities=13% Similarity=0.041 Sum_probs=109.5
Q ss_pred HHHHcCCChhHHHHHHHhccc-----CC----hhhHHHHHHHHHhcCCCCchHHHH------------------HHHHHH
Q 040338 240 TMYAEGGSTQKADLAFELMSR-----RN----MISWMVLISAFSQAGVLEKPRFFF------------------FFVSLL 292 (385)
Q Consensus 240 ~~~~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~a~~~~------------------~~~~l~ 292 (385)
..|...|++++|...|++..+ .+ ..+|+.+..+|.+.|++++|+..+ ++..+.
T Consensus 45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 124 (292)
T 1qqe_A 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG 124 (292)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345566788888877776543 11 357777888888888888887777 677888
Q ss_pred HHhccc-CChhhHHHHHHHHHhccc--------hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-CC---cc-----hHHH
Q 040338 293 SGCSHS-GPVTKGKHYFTAMAKFTY--------TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-PT---CV-----IWGA 354 (385)
Q Consensus 293 ~~~~~~-~~~~~a~~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p~---~~-----~~~~ 354 (385)
..|... |++++|...|++..+..+ ..++..+...|.+.|++++|+..|++..+. |+ .. .|..
T Consensus 125 ~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 204 (292)
T 1qqe_A 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK 204 (292)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 888886 999999999999887544 356788899999999999999999987653 22 11 5677
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhccccC
Q 040338 355 LLGACCSHYNTKLAELVMRNLLQLDVKV 382 (385)
Q Consensus 355 li~~~~~~g~~~~a~~~~~~~~~~~~~~ 382 (385)
+..++...|++++|...+++..+..|..
T Consensus 205 lg~~~~~~g~~~~A~~~~~~al~l~p~~ 232 (292)
T 1qqe_A 205 KGLCQLAATDAVAAARTLQEGQSEDPNF 232 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHGGGCC----
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 8888999999999999999998877753
No 93
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.78 E-value=1.5e-06 Score=80.17 Aligned_cols=341 Identities=10% Similarity=0.017 Sum_probs=205.6
Q ss_pred cCC-ChHHHHHHHHHHHHcccchhhHHhhhhhHHHHHhhhC--CCChhhHHHHHHHHHhhhccCChHHHHHHHHHHHHh-
Q 040338 6 SLK-SLPIARKIHAQLISTCLISSIFLQLIDDDYRVFCDIG--PRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKF- 81 (385)
Q Consensus 6 ~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~- 81 (385)
+.| +++.||.++++++..-+. .+++.+..+|++-. .|++..|...+.-..+.. ...+....+|+..+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~~P~-----~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~--~~~~~i~~~fe~al~~v 78 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLYMS-----KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVS--QKKFKLYEVYEFTLGQF 78 (493)
T ss_dssp ------CCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC------CTHHHHHHHHHHS
T ss_pred HcCcchHHHHHHHHHHHHHCCC-----CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhC--chHHHHHHHHHHHHHHc
Confidence 346 488999999999875422 57899999998766 578888888887655531 1345667788877765
Q ss_pred ccCC-CchHHHhHHHHHH----hcCChhHHHHHHHhccCCCccc----cc----------------------cchHHHHH
Q 040338 82 YFVS-DESIAKSSIDMHV----KCGAVDYAESAFLRMLNPSLFC----WK----------------------FGIIRLLI 130 (385)
Q Consensus 82 g~~~-~~~~~~~li~~~~----~~g~~~~a~~~~~~m~~~~~~~----~~----------------------~~~~~a~~ 130 (385)
|..| +...|...+..+. ..++++.+.++|++........ |. ..+..|..
T Consensus 79 g~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~ 158 (493)
T 2uy1_A 79 ENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQ 158 (493)
T ss_dssp TTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHH
Confidence 5333 5567777776553 3467888889998886532211 11 00111121
Q ss_pred HhcCCC----CCCcchHHHHHHHHHhCCC-------chHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHH
Q 040338 131 MFQKMP----ERDLVSWNTMISILTRHGF-------GFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHS 199 (385)
Q Consensus 131 ~~~~~~----~~~~~~~~~li~~~~~~~~-------~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 199 (385)
++.... ..+...|...+..-...+. .+.+..+|+++... .+-+...|...+..+.+.|+.+.|..+++
T Consensus 159 ~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~e 237 (493)
T 2uy1_A 159 RYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVE 237 (493)
T ss_dssp HHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 111111 1133355554444322211 23466788888775 33356666666667778899999999999
Q ss_pred HHHHhCCCCchHHHHHHHHH----------HHhc--CC------CCCCchhhHHHHHHHHHHcCCChhHHHHHHHhcccC
Q 040338 200 RVVHMEPSLDVFVGSGLIDM----------YLKC--GC------NGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRR 261 (385)
Q Consensus 200 ~~~~~~~~~~~~~~~~li~~----------~~~~--g~------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 261 (385)
+.... +.+...+...... +.+. +. .........|...+....+.++++.|..+|+....|
T Consensus 238 rAi~~--P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~ 315 (493)
T 2uy1_A 238 RGIEM--SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNE 315 (493)
T ss_dssp HHHHH--CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTS
T ss_pred HHHhC--CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCC
Confidence 99988 3333333221111 0000 00 001112245566666666667788888888777323
Q ss_pred ChhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHH
Q 040338 262 NMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKL 339 (385)
Q Consensus 262 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~ 339 (385)
+ .++. +|...+.++... .++.+.|..+|+...+..+ +..+...++...+.|+.+.|..+
T Consensus 316 ~-~~~~-----------------v~i~~A~lE~~~-~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l 376 (493)
T 2uy1_A 316 G-VGPH-----------------VFIYCAFIEYYA-TGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARAL 376 (493)
T ss_dssp C-CCHH-----------------HHHHHHHHHHHH-HCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred C-CChH-----------------HHHHHHHHHHHH-CCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 2 1221 111112222222 2368899999999887665 55566778888889999999999
Q ss_pred HHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 040338 340 IDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQ 377 (385)
Q Consensus 340 ~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 377 (385)
|+.... ....|...+..-.+.|+.+.+..++++..+
T Consensus 377 ~er~~k--~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 377 FKRLEK--TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHSCC--BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999853 567788888888889999999998888764
No 94
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.76 E-value=8.7e-06 Score=77.67 Aligned_cols=68 Identities=15% Similarity=0.164 Sum_probs=56.7
Q ss_pred CCChhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCC---hhHHHHHHHhccCCC
Q 040338 46 PRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGA---VDYAESAFLRMLNPS 117 (385)
Q Consensus 46 ~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~ 117 (385)
+.|..+|..+|..... .+.++.+..+|+.+... ++.....|...+..-.+.|+ .+.+..+|++.....
T Consensus 63 p~d~~~W~~yi~~~~~---~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~ 133 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVS---LKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKE 133 (679)
T ss_dssp TTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSS
T ss_pred cCCHHHHHHHHHHHHh---cCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhc
Confidence 4578899999998665 79999999999999987 56678889999998888888 999999999987644
No 95
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.76 E-value=1.2e-07 Score=91.54 Aligned_cols=172 Identities=8% Similarity=-0.072 Sum_probs=137.4
Q ss_pred cCChHHHHHHHHHHH--------HhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCC
Q 040338 65 VGNIKMALHLHGLVK--------KFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMP 136 (385)
Q Consensus 65 ~~~~~~a~~~~~~m~--------~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~ 136 (385)
.|++++|++.+++.. +. .+.+...+..+..+|.+.|++++|++.|++..+.+
T Consensus 404 ~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~------------------- 463 (681)
T 2pzi_A 404 LSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV------------------- 463 (681)
T ss_dssp TCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-------------------
T ss_pred ccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-------------------
Confidence 799999999999998 43 24467889999999999999999999999887655
Q ss_pred CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-CHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHH
Q 040338 137 ERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGL-SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSG 215 (385)
Q Consensus 137 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 215 (385)
+.+...|..+..++...|++++|+..|++..+. .| +...+..+..++.+.|++++ ++.|++.++..+.
T Consensus 464 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-------- 532 (681)
T 2pzi_A 464 GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-------- 532 (681)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT--------
T ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc--------
Confidence 457788999999999999999999999999885 45 56778889999999999999 9999999987542
Q ss_pred HHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc--C-ChhhHHHHHHHHHhcCCCCch
Q 040338 216 LIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR--R-NMISWMVLISAFSQAGVLEKP 282 (385)
Q Consensus 216 li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a 282 (385)
+...|..+..++.+.|++++|+..|++..+ | +...+..+..++...++.+++
T Consensus 533 ---------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~ 587 (681)
T 2pzi_A 533 ---------------VISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEV 587 (681)
T ss_dssp ---------------CHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------C
T ss_pred ---------------hHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCC
Confidence 334567788888899999999999999976 3 345676777777666654444
No 96
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.74 E-value=1.3e-07 Score=81.79 Aligned_cols=231 Identities=10% Similarity=-0.062 Sum_probs=142.3
Q ss_pred cCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHH
Q 040338 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWN 144 (385)
Q Consensus 65 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 144 (385)
.|++++|.+++++..+... .. + +...+++++|...|.+
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~------~---~~~~~~~~~A~~~~~~-------------------------------- 41 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS------F---MKWKPDYDSAASEYAK-------------------------------- 41 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC------S---SSCSCCHHHHHHHHHH--------------------------------
T ss_pred cchHHHHHHHHHHHHHHcc-cc------c---cCCCCCHHHHHHHHHH--------------------------------
Confidence 5778888888887776422 11 0 1114667777666543
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHC----CCCC-CHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHH
Q 040338 145 TMISILTRHGFGFETLCTFIELWNH----GFGL-SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDM 219 (385)
Q Consensus 145 ~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 219 (385)
....|...|++++|...|.+..+. |-.+ -..+|..+...|.+.|++++|+..+++.++.-..
T Consensus 42 -a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~------------ 108 (307)
T 2ifu_A 42 -AAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVE------------ 108 (307)
T ss_dssp -HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHT------------
T ss_pred -HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH------------
Confidence 456777889999999998887653 2111 1457788888899999999999999987764211
Q ss_pred HHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhcccCChhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcccC
Q 040338 220 YLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSG 299 (385)
Q Consensus 220 ~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~l~~~~~~~~ 299 (385)
.|+ ......++..+...|.. |++++|+..|++..+- +-..|+.. ....++..+...+...|
T Consensus 109 ---~g~--~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~-----------~~~~~~~~--~~~~~~~~lg~~~~~~g 169 (307)
T 2ifu_A 109 ---NGT--PDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAV-----------FENEERLR--QAAELIGKASRLLVRQQ 169 (307)
T ss_dssp ---TTC--HHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHH-----------HHHTTCHH--HHHHHHHHHHHHHHHTT
T ss_pred ---cCC--HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH-----------HHhCCChh--HHHHHHHHHHHHHHHcC
Confidence 110 00123456777788878 9999999999877541 11111100 00114455555666666
Q ss_pred ChhhHHHHHHHHHhccc--------hhhHHHHHHHHHccCCHHHHHHHHHhCCCCCCcc------hHHHHHHHHHhcCCh
Q 040338 300 PVTKGKHYFTAMAKFTY--------TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCV------IWGALLGACCSHYNT 365 (385)
Q Consensus 300 ~~~~a~~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~------~~~~li~~~~~~g~~ 365 (385)
++++|+..|++...... ...+..++.++...|++++|...|++....|+.. ....++.++ ..|+.
T Consensus 170 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~p~~~~~~e~~~l~~l~~~~-~~~d~ 248 (307)
T 2ifu_A 170 KFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAALEDLLQAY-DEQDE 248 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTSTTSHHHHHHHHHHHHH-HTTCH
T ss_pred CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHH-HhcCH
Confidence 66666776766665432 2355666777777889999998888876224321 244455555 45666
Q ss_pred HHHHH
Q 040338 366 KLAEL 370 (385)
Q Consensus 366 ~~a~~ 370 (385)
+.+..
T Consensus 249 ~~~~~ 253 (307)
T 2ifu_A 249 EQLLR 253 (307)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 97
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.72 E-value=1.7e-07 Score=79.05 Aligned_cols=195 Identities=7% Similarity=-0.072 Sum_probs=115.2
Q ss_pred CCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCC---cchHHHHHHHHHhCCCchHHHH
Q 040338 85 SDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERD---LVSWNTMISILTRHGFGFETLC 161 (385)
Q Consensus 85 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~ 161 (385)
.+...+-.+...+.+.|++++|...|+++.+..+ .+ ...+..+..+|.+.|++++|+.
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-------------------~~~~~~~a~~~lg~~~~~~~~~~~A~~ 73 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGR-------------------THEWAADAQFYLARAYYQNKEYLLAAS 73 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS-------------------CSTTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-------------------CCcchHHHHHHHHHHHHHhCcHHHHHH
Confidence 3456667777788888999999998888766542 22 5567778888888899999999
Q ss_pred HHHHHHHCCC-CCC-HhhHHHHHHHhcC--------ccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCch
Q 040338 162 TFIELWNHGF-GLS-SMLYATAFSARAS--------VYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESS 231 (385)
Q Consensus 162 ~~~~m~~~g~-~p~-~~t~~~ll~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~ 231 (385)
.|++..+... .|. ...+..+..++.. .|++++|+..|+.+++..+.. ......+.......+ ..
T Consensus 74 ~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~-~~~~~a~~~~~~~~~-----~~ 147 (261)
T 3qky_A 74 EYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNH-ELVDDATQKIRELRA-----KL 147 (261)
T ss_dssp HHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTC-TTHHHHHHHHHHHHH-----HH
T ss_pred HHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCc-hhHHHHHHHHHHHHH-----HH
Confidence 9988887521 122 3445566666766 888888888888888775421 111111100000000 00
Q ss_pred hhHHHHHHHHHHcCCChhHHHHHHHhccc--CC----hhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcccCChhhHH
Q 040338 232 IQIGKALVTMYAEGGSTQKADLAFELMSR--RN----MISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGK 305 (385)
Q Consensus 232 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~l~~~~~~~~~~~~a~ 305 (385)
...+..+...|.+.|++++|+..|+...+ |+ ...+..+..+|...|+.+.+. ...|++++|.
T Consensus 148 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~------------~~~~~~~~A~ 215 (261)
T 3qky_A 148 ARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRA------------RQPERYRRAV 215 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGG------------GHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhh------------cccchHHHHH
Confidence 11234455666677777777777776654 32 123444445555444333221 1235556666
Q ss_pred HHHHHHHhccc
Q 040338 306 HYFTAMAKFTY 316 (385)
Q Consensus 306 ~~~~~~~~~~~ 316 (385)
..++++.+..+
T Consensus 216 ~~~~~~~~~~p 226 (261)
T 3qky_A 216 ELYERLLQIFP 226 (261)
T ss_dssp HHHHHHHHHCT
T ss_pred HHHHHHHHHCC
Confidence 66666655544
No 98
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.71 E-value=7.3e-07 Score=76.30 Aligned_cols=176 Identities=10% Similarity=-0.057 Sum_probs=124.3
Q ss_pred hHHHHHhhhCCCChhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccC
Q 040338 36 DDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLN 115 (385)
Q Consensus 36 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 115 (385)
.....++...+.+...+..+-..+.. .|++++|...+++..+.. +-+...+..+...+.+.|++++|...+++...
T Consensus 104 ~l~~~l~~~lp~~~~~~~~~a~~~~~---~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~ 179 (287)
T 3qou_A 104 AIRALLDXVLPREEELXAQQAMQLMQ---ESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPL 179 (287)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHh---CCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCch
Confidence 34444444443334444444445444 899999999999998874 33677888899999999999999999988765
Q ss_pred CCccccccchHHHHHHhcCCCCCCcchHH-HHHHHHHhCCCchHHHHHHHHHHHCCCCC-CHhhHHHHHHHhcCccCccc
Q 040338 116 PSLFCWKFGIIRLLIMFQKMPERDLVSWN-TMISILTRHGFGFETLCTFIELWNHGFGL-SSMLYATAFSARASVYDLEW 193 (385)
Q Consensus 116 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~ 193 (385)
.+ |+..... .....+.+.++.++|...|++.... .| +...+..+...+...|++++
T Consensus 180 ~~--------------------p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~ 237 (287)
T 3qou_A 180 QD--------------------QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEE 237 (287)
T ss_dssp GG--------------------CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred hh--------------------cchHHHHHHHHHHHHhhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHH
Confidence 43 4333222 2233466778888899999888775 44 57788888899999999999
Q ss_pred hhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhc
Q 040338 194 GPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELM 258 (385)
Q Consensus 194 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 258 (385)
|...+..+++..+.. .+...+..++..+...|+.++|...|++-
T Consensus 238 A~~~l~~~l~~~p~~---------------------~~~~a~~~l~~~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 238 ALELLFGHLRXDLTA---------------------ADGQTRXTFQEILAALGTGDALASXYRRQ 281 (287)
T ss_dssp HHHHHHHHHHHCTTG---------------------GGGHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHhccccc---------------------ccchHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 999999999886532 12334566666677777888887777643
No 99
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.71 E-value=6.5e-07 Score=76.22 Aligned_cols=146 Identities=8% Similarity=-0.122 Sum_probs=101.1
Q ss_pred HHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHH
Q 040338 71 ALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISIL 150 (385)
Q Consensus 71 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~ 150 (385)
++..+++..+.+ +++..++..+..++...|++++|++++.+....+.. .-+...+-.++..+
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~-----------------~~~lea~~l~vqi~ 146 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEA-----------------EGTTELLLLAIEVA 146 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCS-----------------TTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-----------------cCcHHHHHHHHHHH
Confidence 566677666654 445556667778888899999999999887554410 13566778888999
Q ss_pred HhCCCchHHHHHHHHHHHCCCCC-----CHhhHHHHHHH--hcC--ccCccchhhHHHHHHHhCCCCchHHHHHHHHHHH
Q 040338 151 TRHGFGFETLCTFIELWNHGFGL-----SSMLYATAFSA--RAS--VYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYL 221 (385)
Q Consensus 151 ~~~~~~~~a~~~~~~m~~~g~~p-----~~~t~~~ll~~--~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 221 (385)
.+.|+++.|.+.+++|.+. .| +..+...+..+ ... .++..+|..+|+++.+.. |+...
T Consensus 147 L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~--------- 213 (310)
T 3mv2_B 147 LLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKT--------- 213 (310)
T ss_dssp HHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHH---------
T ss_pred HHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCccc---------
Confidence 9999999999999999774 56 35565666655 222 348899999999986653 22111
Q ss_pred hcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc
Q 040338 222 KCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR 260 (385)
Q Consensus 222 ~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 260 (385)
-..++.++.+.|++++|...++.+.+
T Consensus 214 -------------~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 214 -------------QLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp -------------HHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred -------------HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 12233366777899999999986543
No 100
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.70 E-value=2.9e-07 Score=75.00 Aligned_cols=150 Identities=10% Similarity=-0.120 Sum_probs=125.7
Q ss_pred hhHHHHHHHHHHcCCChhHHHHHHHhcccC-ChhhHHHHHHHHHhcC----CCCchHHHH----------HHHHHHHHhc
Q 040338 232 IQIGKALVTMYAEGGSTQKADLAFELMSRR-NMISWMVLISAFSQAG----VLEKPRFFF----------FFVSLLSGCS 296 (385)
Q Consensus 232 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~li~~~~~~g----~~~~a~~~~----------~~~~l~~~~~ 296 (385)
...+..+...|...+++++|+..|++..+. +...+..|...|.. + ++++|+..| ++..+...|.
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~ 96 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAGSKSGEIVLARVLV 96 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344566777777788999999999988764 67788888888887 6 788899888 7777888887
Q ss_pred c----cCChhhHHHHHHHHHhccc----hhhHHHHHHHHHc----cCCHHHHHHHHHhCCCC-CCcchHHHHHHHHHhc-
Q 040338 297 H----SGPVTKGKHYFTAMAKFTY----TCYFVCMVDLLGL----SGLLGEAKKLIDEMPSK-PTCVIWGALLGACCSH- 362 (385)
Q Consensus 297 ~----~~~~~~a~~~~~~~~~~~~----~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~-p~~~~~~~li~~~~~~- 362 (385)
. .+++++|...|++..+.+. +..+..|...|.. .+++++|.+.|++..+. ++...+..|...|...
T Consensus 97 ~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg~~y~~g~ 176 (212)
T 3rjv_A 97 NRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMMFQQGE 176 (212)
T ss_dssp CGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHCB
T ss_pred cCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCC
Confidence 7 8999999999999999998 7888889999988 88999999999998765 5677888888888764
Q ss_pred C-----ChHHHHHHHHHHHhccccC
Q 040338 363 Y-----NTKLAELVMRNLLQLDVKV 382 (385)
Q Consensus 363 g-----~~~~a~~~~~~~~~~~~~~ 382 (385)
| +.++|..++++..+.|...
T Consensus 177 gg~~~~d~~~A~~~~~~A~~~g~~~ 201 (212)
T 3rjv_A 177 KGFIEPNKQKALHWLNVSCLEGFDT 201 (212)
T ss_dssp TTTBCCCHHHHHHHHHHHHHHTCHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCHH
Confidence 3 8999999999998887643
No 101
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.67 E-value=1.3e-07 Score=76.91 Aligned_cols=147 Identities=9% Similarity=-0.026 Sum_probs=114.4
Q ss_pred HHHHHHHHcCCChhHHHHHHHhccc--C-ChhhHHH----------------HHHHHHhcCCCCchHHHH----------
Q 040338 236 KALVTMYAEGGSTQKADLAFELMSR--R-NMISWMV----------------LISAFSQAGVLEKPRFFF---------- 286 (385)
Q Consensus 236 ~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~----------------li~~~~~~g~~~~a~~~~---------- 286 (385)
-.....+...|++++|+..|+...+ | +...|.. +..+|.+.|++++|+..+
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 87 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNN 87 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Confidence 3445667788999999999998876 3 3455666 888999999999999998
Q ss_pred --HHHHHHHHhcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCC--HHHHHHHHHhCCCC-CCcchHHHHHHHH
Q 040338 287 --FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGL--LGEAKKLIDEMPSK-PTCVIWGALLGAC 359 (385)
Q Consensus 287 --~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~-p~~~~~~~li~~~ 359 (385)
.+..+...+...|++++|...|++..+..+ ...+..+...|...|+ ...+...++..... |....+.....++
T Consensus 88 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~ 167 (208)
T 3urz_A 88 VDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSK 167 (208)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 888999999999999999999999999888 7788888888766554 45566777666543 2223344456677
Q ss_pred HhcCChHHHHHHHHHHHhccccC
Q 040338 360 CSHYNTKLAELVMRNLLQLDVKV 382 (385)
Q Consensus 360 ~~~g~~~~a~~~~~~~~~~~~~~ 382 (385)
...|++++|...|++.++..|.+
T Consensus 168 ~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 168 LFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHccCHHHHHHHHHHHHHhCCCH
Confidence 77899999999999999988864
No 102
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.65 E-value=4e-07 Score=87.83 Aligned_cols=171 Identities=12% Similarity=-0.003 Sum_probs=130.5
Q ss_pred HhCCCchHHHHHHHHHHH------CCCCC-CHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhc
Q 040338 151 TRHGFGFETLCTFIELWN------HGFGL-SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKC 223 (385)
Q Consensus 151 ~~~~~~~~a~~~~~~m~~------~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 223 (385)
...|++++|++.+++..+ ....| +...+..+..++...|++++|++.++...+...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p----------------- 464 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG----------------- 464 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-----------------
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-----------------
Confidence 778999999999999871 01334 566788888899999999999999999988743
Q ss_pred CCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc--C-ChhhHHHHHHHHHhcCCCCchHHHH------------HH
Q 040338 224 GCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR--R-NMISWMVLISAFSQAGVLEKPRFFF------------FF 288 (385)
Q Consensus 224 g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~------------~~ 288 (385)
.+...|..+...+...|++++|+..|++..+ | +...|..+..+|.+.|++++ ++.+ .|
T Consensus 465 ------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~ 537 (681)
T 2pzi_A 465 ------WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAA 537 (681)
T ss_dssp ------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHH
T ss_pred ------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHH
Confidence 2344567777888888999999999998875 4 56788889999999999988 8777 67
Q ss_pred HHHHHHhcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccC--------CHHHHHHHHHhCCC
Q 040338 289 VSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSG--------LLGEAKKLIDEMPS 345 (385)
Q Consensus 289 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~ 345 (385)
..+..++...|++++|.+.|++..+..+ ...+..+..++...+ ++++|.+.++.+..
T Consensus 538 ~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~ 604 (681)
T 2pzi_A 538 FGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPP 604 (681)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCT
T ss_pred HHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCC
Confidence 7777888888888888888888777666 556666666665533 36666666666653
No 103
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.64 E-value=4e-07 Score=77.98 Aligned_cols=160 Identities=8% Similarity=-0.082 Sum_probs=126.5
Q ss_pred cCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHH
Q 040338 83 FVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCT 162 (385)
Q Consensus 83 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 162 (385)
.+.+...+..+...+.+.|++++|...|++..+.+ +.+...+..+...+.+.|++++|...
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-------------------P~~~~a~~~la~~~~~~g~~~~A~~~ 173 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-------------------NQNGEIGLLLAETLIALNRSEDAEAV 173 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-------------------TSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-------------------CcchhHHHHHHHHHHHCCCHHHHHHH
Confidence 35566778888889999999999999999887655 35677899999999999999999999
Q ss_pred HHHHHHCCCCCCHhhHHH-HHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHH
Q 040338 163 FIELWNHGFGLSSMLYAT-AFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241 (385)
Q Consensus 163 ~~~m~~~g~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~ 241 (385)
+++.... .|+...... ....+...++.+.|...+++.....+ .+...+..+...
T Consensus 174 l~~~~~~--~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P-----------------------~~~~~~~~la~~ 228 (287)
T 3qou_A 174 LXTIPLQ--DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENP-----------------------EDAALATQLALQ 228 (287)
T ss_dssp HTTSCGG--GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCT-----------------------TCHHHHHHHHHH
T ss_pred HHhCchh--hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCC-----------------------ccHHHHHHHHHH
Confidence 9988664 455443322 23346677888889999999888754 234456778888
Q ss_pred HHcCCChhHHHHHHHhccc--CC---hhhHHHHHHHHHhcCCCCchHHHH
Q 040338 242 YAEGGSTQKADLAFELMSR--RN---MISWMVLISAFSQAGVLEKPRFFF 286 (385)
Q Consensus 242 ~~~~g~~~~A~~~~~~m~~--~~---~~~~~~li~~~~~~g~~~~a~~~~ 286 (385)
+...|++++|+..|....+ |+ ...+..+...|...|+.++|...+
T Consensus 229 l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~ 278 (287)
T 3qou_A 229 LHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXY 278 (287)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHH
Confidence 8889999999999999876 42 567888999999999988887665
No 104
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.64 E-value=4.2e-07 Score=78.67 Aligned_cols=142 Identities=10% Similarity=-0.049 Sum_probs=112.8
Q ss_pred HHHHHcCCChhHHHHHHHhccc-----CC----hhhHHHHHHHHHhcCCCCchHHHH------------------HHHHH
Q 040338 239 VTMYAEGGSTQKADLAFELMSR-----RN----MISWMVLISAFSQAGVLEKPRFFF------------------FFVSL 291 (385)
Q Consensus 239 i~~~~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~a~~~~------------------~~~~l 291 (385)
...|...|++++|...|.+..+ .+ ..+|+.+...|...|++++|+..+ ++..+
T Consensus 43 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 122 (307)
T 2ifu_A 43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRA 122 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3456677888888888877654 11 357788888899999999998887 67788
Q ss_pred HHHhcccCChhhHHHHHHHHHhccc--------hhhHHHHHHHHHccCCHHHHHHHHHhCCCC----CC----cchHHHH
Q 040338 292 LSGCSHSGPVTKGKHYFTAMAKFTY--------TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK----PT----CVIWGAL 355 (385)
Q Consensus 292 ~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----p~----~~~~~~l 355 (385)
...|.. |++++|...+++...... ..++..+...|.+.|++++|+..|++.... ++ ...+..+
T Consensus 123 g~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 201 (307)
T 2ifu_A 123 GKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQ 201 (307)
T ss_dssp HHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence 888888 999999999998876543 467788899999999999999999988652 22 2356677
Q ss_pred HHHHHhcCChHHHHHHHHHHHhccccC
Q 040338 356 LGACCSHYNTKLAELVMRNLLQLDVKV 382 (385)
Q Consensus 356 i~~~~~~g~~~~a~~~~~~~~~~~~~~ 382 (385)
..++...|++++|...+++.. ..|..
T Consensus 202 g~~~~~~g~~~~A~~~~~~al-~~p~~ 227 (307)
T 2ifu_A 202 VLVQLHRADYVAAQKCVRESY-SIPGF 227 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHT-TSTTS
T ss_pred HHHHHHcCCHHHHHHHHHHHh-CCCCC
Confidence 778888899999999999998 66643
No 105
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.63 E-value=3.7e-07 Score=71.89 Aligned_cols=154 Identities=6% Similarity=-0.124 Sum_probs=91.8
Q ss_pred HHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHH
Q 040338 89 IAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWN 168 (385)
Q Consensus 89 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 168 (385)
.+..+...+.+.|++++|...|++..+.+ +.+...+..+...+.+.|++++|+..|++...
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-------------------P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~ 68 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-------------------QSRGDVKLAKADCLLETKQFELAQELLATIPL 68 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-------------------HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------------------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh
Confidence 34455566667777777777777665544 24556677777777777777777777776654
Q ss_pred CCCCCCHhhHHHHHHH-hcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCC
Q 040338 169 HGFGLSSMLYATAFSA-RASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGS 247 (385)
Q Consensus 169 ~g~~p~~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~ 247 (385)
. .|+...+..+... +...++...+...++..++..+ .+...+..+...+...|+
T Consensus 69 ~--~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P-----------------------~~~~~~~~la~~~~~~g~ 123 (176)
T 2r5s_A 69 E--YQDNSYKSLIAKLELHQQAAESPELKRLEQELAANP-----------------------DNFELACELAVQYNQVGR 123 (176)
T ss_dssp G--GCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHST-----------------------TCHHHHHHHHHHHHHTTC
T ss_pred c--cCChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCC-----------------------CCHHHHHHHHHHHHHccc
Confidence 3 2333222221111 1122233345666666665532 123445666667777778
Q ss_pred hhHHHHHHHhccc--CC---hhhHHHHHHHHHhcCCCCchHHHH
Q 040338 248 TQKADLAFELMSR--RN---MISWMVLISAFSQAGVLEKPRFFF 286 (385)
Q Consensus 248 ~~~A~~~~~~m~~--~~---~~~~~~li~~~~~~g~~~~a~~~~ 286 (385)
+++|+..|++..+ |+ ...+..+...+...|+.++|...|
T Consensus 124 ~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 124 DEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp HHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 8888888877765 32 346677777777777777776554
No 106
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.59 E-value=2e-07 Score=71.33 Aligned_cols=118 Identities=9% Similarity=0.034 Sum_probs=96.2
Q ss_pred hHHHHHHHHHhcCCCCchHHHH-----HHHHHHHHhcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHH
Q 040338 265 SWMVLISAFSQAGVLEKPRFFF-----FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAK 337 (385)
Q Consensus 265 ~~~~li~~~~~~g~~~~a~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~ 337 (385)
....+.+.+...+.+.+++++- .+..+...+...|++++|...|++.....+ ...+..+..+|...|++++|+
T Consensus 11 ~~~~l~~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai 90 (151)
T 3gyz_A 11 ISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAA 90 (151)
T ss_dssp HHHHHHHHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHH
Confidence 3455555555566666665444 666777778888999999999999999888 888899999999999999999
Q ss_pred HHHHhCCC-CC-CcchHHHHHHHHHhcCChHHHHHHHHHHHhccccC
Q 040338 338 KLIDEMPS-KP-TCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKV 382 (385)
Q Consensus 338 ~~~~~m~~-~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 382 (385)
..|++... .| +...|..+..+|...|++++|...|++.++..+.+
T Consensus 91 ~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 91 DLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 99998876 24 56788999999999999999999999999887754
No 107
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.59 E-value=6.4e-07 Score=70.50 Aligned_cols=143 Identities=9% Similarity=-0.058 Sum_probs=112.5
Q ss_pred HHHHHHHHHcCCChhHHHHHHHhccc---CChhhHHHHHHHHHhcCCCCchHHHH----------HHHHHHH-H-hcccC
Q 040338 235 GKALVTMYAEGGSTQKADLAFELMSR---RNMISWMVLISAFSQAGVLEKPRFFF----------FFVSLLS-G-CSHSG 299 (385)
Q Consensus 235 ~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~----------~~~~l~~-~-~~~~~ 299 (385)
+..+...+...|++++|+..|+...+ .+...+..+...+...|++++|+..+ .+..+.. . +...+
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhc
Confidence 44566778889999999999998875 36678888999999999999999888 1111111 1 11222
Q ss_pred ChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-CC---cchHHHHHHHHHhcCChHHHHHHHH
Q 040338 300 PVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-PT---CVIWGALLGACCSHYNTKLAELVMR 373 (385)
Q Consensus 300 ~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p~---~~~~~~li~~~~~~g~~~~a~~~~~ 373 (385)
....|...+++..+..+ ...+..+...+...|++++|...|+++.+. |+ ...+..+...+...|+.++|...|+
T Consensus 89 ~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~ 168 (176)
T 2r5s_A 89 AESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYR 168 (176)
T ss_dssp TSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred ccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 33457888999888777 788888999999999999999999988764 54 4578999999999999999999999
Q ss_pred HHHh
Q 040338 374 NLLQ 377 (385)
Q Consensus 374 ~~~~ 377 (385)
+.+.
T Consensus 169 ~al~ 172 (176)
T 2r5s_A 169 RQLY 172 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 108
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.58 E-value=6.1e-07 Score=84.71 Aligned_cols=152 Identities=10% Similarity=-0.099 Sum_probs=91.0
Q ss_pred cCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHH
Q 040338 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWN 144 (385)
Q Consensus 65 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 144 (385)
.|++++|.+.+++..+.. +.+...+..+...|.+.|++++|.+.|++..+.+ +.+...|.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------------------p~~~~~~~ 61 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-------------------PGHPEAVA 61 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-------------------TTCHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------------CCCHHHHH
Confidence 366777777777776653 2346677777777777788888888777766554 34566777
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcC
Q 040338 145 TMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG 224 (385)
Q Consensus 145 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 224 (385)
.+...|...|++++|.+.|++..+.. +-+...+..+..++.+.|++++|.+.+++..+....
T Consensus 62 ~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----------------- 123 (568)
T 2vsy_A 62 RLGRVRWTQQRHAEAAVLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE----------------- 123 (568)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----------------
Confidence 77777777888888888887776642 224566777777777778888888887777776431
Q ss_pred CCCCCchhhHHHHHHHHHHcC---CChhHHHHHHHhccc
Q 040338 225 CNGIESSIQIGKALVTMYAEG---GSTQKADLAFELMSR 260 (385)
Q Consensus 225 ~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~ 260 (385)
+...+..+...+... |+.++|.+.+++..+
T Consensus 124 ------~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 124 ------EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp ------CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred ------CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 222345555556666 677777777777654
No 109
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.58 E-value=9.2e-07 Score=71.74 Aligned_cols=160 Identities=8% Similarity=-0.125 Sum_probs=112.0
Q ss_pred ccCChHHHHHHHHHHHHhccCCCchHHHh----------------HHHHHHhcCChhHHHHHHHhccCCCccccccchHH
Q 040338 64 CVGNIKMALHLHGLVKKFYFVSDESIAKS----------------SIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIR 127 (385)
Q Consensus 64 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~----------------li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 127 (385)
..|++++|...|+...+... -+...|.. +..+|.+.|++++|...|++..+.+
T Consensus 16 ~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---------- 84 (208)
T 3urz_A 16 EAGQNGQAVSYFRQTIALNI-DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA---------- 84 (208)
T ss_dssp HTTCHHHHHHHHHHHHHHCH-HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------
T ss_pred HCCCHHHHHHHHHHHHHhCC-CChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC----------
Confidence 37999999999999988642 24556666 8888999999999999998876655
Q ss_pred HHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-CHhhHHHHHHHhcCccCc--cchhhHHHHHHHh
Q 040338 128 LLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGL-SSMLYATAFSARASVYDL--EWGPHLHSRVVHM 204 (385)
Q Consensus 128 a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~--~~a~~~~~~~~~~ 204 (385)
+.+...|..+...+...|++++|+..|++..+. .| +..++..+..++...|+. ..+...+....
T Consensus 85 ---------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~-- 151 (208)
T 3urz_A 85 ---------PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS-- 151 (208)
T ss_dssp ---------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred ---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh--
Confidence 357788899999999999999999999999875 45 566777777776555432 33333333332
Q ss_pred CCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc--CChhhHHHH
Q 040338 205 EPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR--RNMISWMVL 269 (385)
Q Consensus 205 ~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~l 269 (385)
.|+... ..+.....++...|++++|+..|++..+ |+......+
T Consensus 152 --~~~~~~--------------------~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l 196 (208)
T 3urz_A 152 --SPTKMQ--------------------YARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTL 196 (208)
T ss_dssp --CCCHHH--------------------HHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHH
T ss_pred --CCCchh--------------------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 222221 1223344556667899999999999876 555444433
No 110
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.58 E-value=3.7e-07 Score=69.84 Aligned_cols=137 Identities=8% Similarity=-0.120 Sum_probs=98.7
Q ss_pred cCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHH
Q 040338 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWN 144 (385)
Q Consensus 65 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 144 (385)
.|++++|+..++...... +-+...+-.+...|.+.|++++|++.|++..+.+ +.+..+|.
T Consensus 10 ~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-------------------p~~~~a~~ 69 (150)
T 4ga2_A 10 KADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-------------------ERDPKAHR 69 (150)
T ss_dssp HHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------TTCHHHHH
T ss_pred cChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------------CCCHHHHH
Confidence 677888888887776542 2234556677888888899999998888876555 35677888
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCC-CHhhHHHHHHHhcCccCccchhhH-HHHHHHhCCCCchHHHHHHHHHHHh
Q 040338 145 TMISILTRHGFGFETLCTFIELWNHGFGL-SSMLYATAFSARASVYDLEWGPHL-HSRVVHMEPSLDVFVGSGLIDMYLK 222 (385)
Q Consensus 145 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~li~~~~~ 222 (385)
.+..+|.+.|++++|+..|++..+. .| +...+..+...+.+.|+.+++.+. ++...+..+ -++.+|......+.+
T Consensus 70 ~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P-~~~~~~~l~~~ll~~ 146 (150)
T 4ga2_A 70 FLGLLYELEENTDKAVECYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP-GSPAVYKLKEQLLDC 146 (150)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST-TCHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHH
Confidence 8888889999999999999888774 45 466788888888888888776655 477777643 244555544444444
Q ss_pred cC
Q 040338 223 CG 224 (385)
Q Consensus 223 ~g 224 (385)
.|
T Consensus 147 ~G 148 (150)
T 4ga2_A 147 EG 148 (150)
T ss_dssp CC
T ss_pred hC
Confidence 44
No 111
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.55 E-value=1.1e-06 Score=71.17 Aligned_cols=121 Identities=14% Similarity=-0.057 Sum_probs=76.3
Q ss_pred cCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHH
Q 040338 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWN 144 (385)
Q Consensus 65 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 144 (385)
.|++++|...+++. +.|+...+..+..+|.+.|++++|...|++..+.+ +.+...|.
T Consensus 19 ~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------------------~~~~~~~~ 75 (213)
T 1hh8_A 19 KKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-------------------KHLAVAYF 75 (213)
T ss_dssp TTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------TTCHHHHH
T ss_pred hCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------------ccchHHHH
Confidence 57777777776655 24566666777777777777777777776654433 24455666
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCC--------------CC-CHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCC
Q 040338 145 TMISILTRHGFGFETLCTFIELWNHGF--------------GL-SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSL 208 (385)
Q Consensus 145 ~li~~~~~~~~~~~a~~~~~~m~~~g~--------------~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 208 (385)
.+..++...|++++|+..|++..+... .| ....+..+..++...|++++|...++...+..+..
T Consensus 76 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 76 QRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 666777777777777777777665321 11 12455666666777777777777777776655433
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.52 E-value=1.3e-06 Score=82.51 Aligned_cols=150 Identities=6% Similarity=-0.092 Sum_probs=108.8
Q ss_pred hhhHHHHHhhhC---CCChhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHH
Q 040338 34 IDDDYRVFCDIG---PRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAF 110 (385)
Q Consensus 34 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 110 (385)
+++|...|++.. +.+...|..+-..+.. .|++++|.+.+++..+.. +.+...+..+..+|...|++++|.+.|
T Consensus 5 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 5 GPRELLQLRAAVRHRPQDFVAWLMLADAELG---MGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp ----------------CCHHHHHHHHHHHHH---HTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 445555555443 2345667777777666 799999999999988864 335778888889999999999999999
Q ss_pred HhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCc--
Q 040338 111 LRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASV-- 188 (385)
Q Consensus 111 ~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~-- 188 (385)
++..+.+ +.+...+..+..++.+.|++++|.+.|++..+.. +-+...+..+..++...
T Consensus 81 ~~al~~~-------------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~ 140 (568)
T 2vsy_A 81 QQASDAA-------------------PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCD 140 (568)
T ss_dssp HHHHHHC-------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhcC-------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhc
Confidence 8876544 3567788888899999999999999999988752 22566777888888888
Q ss_pred -cCccchhhHHHHHHHhCCC
Q 040338 189 -YDLEWGPHLHSRVVHMEPS 207 (385)
Q Consensus 189 -~~~~~a~~~~~~~~~~~~~ 207 (385)
|+.++|.+.+++..+.+..
T Consensus 141 ~g~~~~A~~~~~~al~~~p~ 160 (568)
T 2vsy_A 141 WRALDVLSAQVRAAVAQGVG 160 (568)
T ss_dssp CTTHHHHHHHHHHHHHHTCC
T ss_pred cccHHHHHHHHHHHHhcCCc
Confidence 8899999999998887654
No 113
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.51 E-value=2.9e-06 Score=68.78 Aligned_cols=125 Identities=10% Similarity=-0.108 Sum_probs=75.2
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHhcccCChhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcccCChhhHHHHHHHHHh
Q 040338 234 IGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAK 313 (385)
Q Consensus 234 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 313 (385)
.+..+...+...|++++|+..|++..+++...+..+...|...|++++|+..+ ++..+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~----------------------~~al~ 65 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAF----------------------TRSIN 65 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHH----------------------HHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHH----------------------HHHHH
Confidence 45567778889999999999999998777777777777777666666665554 44433
Q ss_pred ccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-C-Cc----------------chHHHHHHHHHhcCChHHHHHHHH
Q 040338 314 FTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-P-TC----------------VIWGALLGACCSHYNTKLAELVMR 373 (385)
Q Consensus 314 ~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p-~~----------------~~~~~li~~~~~~g~~~~a~~~~~ 373 (385)
..+ ...+..+..+|...|++++|.+.|++..+. | +. ..|..+..+|...|++++|...++
T Consensus 66 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 145 (213)
T 1hh8_A 66 RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLA 145 (213)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence 333 444444555555555555555555544331 1 11 344455555555555555555555
Q ss_pred HHHhccc
Q 040338 374 NLLQLDV 380 (385)
Q Consensus 374 ~~~~~~~ 380 (385)
+..+..|
T Consensus 146 ~al~~~p 152 (213)
T 1hh8_A 146 LATSMKS 152 (213)
T ss_dssp HHHTTCC
T ss_pred HHHHcCc
Confidence 5555444
No 114
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.50 E-value=0.00012 Score=62.76 Aligned_cols=230 Identities=8% Similarity=-0.014 Sum_probs=159.8
Q ss_pred HHHHHHHHHhhhccC-ChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcC--ChhHHHHHHHhccCCCccccccchHHH
Q 040338 52 YNTMINGGVRCLCVG-NIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCG--AVDYAESAFLRMLNPSLFCWKFGIIRL 128 (385)
Q Consensus 52 ~~~li~~~~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~~~~~~~~~a 128 (385)
|..++.-+......| ..++|+++++.+...+. -+..+|+.--.++...| +++++++.++.+...+
T Consensus 32 y~~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP-~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n----------- 99 (306)
T 3dra_A 32 YKQIMGLLLALMKAEEYSERALHITELGINELA-SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN----------- 99 (306)
T ss_dssp HHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCc-HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-----------
Confidence 455554444333344 45799999999998752 25566888888888888 9999999999887665
Q ss_pred HHHhcCCCCCCcchHHHHHHHH----HhC---CCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCcc--chhhHHH
Q 040338 129 LIMFQKMPERDLVSWNTMISIL----TRH---GFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLE--WGPHLHS 199 (385)
Q Consensus 129 ~~~~~~~~~~~~~~~~~li~~~----~~~---~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~--~a~~~~~ 199 (385)
+.+..+|+.--..+ ... +++++++.+++++.+.. +-|.+.++.--..+.+.|.++ ++++.++
T Consensus 100 --------Pk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~ 170 (306)
T 3dra_A 100 --------EKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVD 170 (306)
T ss_dssp --------TTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred --------cccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHH
Confidence 35666777655554 455 78999999999999852 337777776666666677777 9999999
Q ss_pred HHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCC------hhHHHHHHHhccc---CChhhHHHHH
Q 040338 200 RVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGS------TQKADLAFELMSR---RNMISWMVLI 270 (385)
Q Consensus 200 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~------~~~A~~~~~~m~~---~~~~~~~~li 270 (385)
.+++..+ -+.. .|+.-...+.+.|+ ++++++.++...+ .|...|+-+-
T Consensus 171 ~~i~~d~-~N~s----------------------AW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~ 227 (306)
T 3dra_A 171 KVIDTDL-KNNS----------------------AWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLL 227 (306)
T ss_dssp HHHHHCT-TCHH----------------------HHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHhCC-CCHH----------------------HHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHH
Confidence 9998764 2333 33443344444444 7888888887765 3778888888
Q ss_pred HHHHhcCCCCchHHHHHHHHHHHHhcccCChhhHHHHHHHHHhcc---c--hhhHHHHHHHHHccCCHHHHHHHHHhCCC
Q 040338 271 SAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFT---Y--TCYFVCMVDLLGLSGLLGEAKKLIDEMPS 345 (385)
Q Consensus 271 ~~~~~~g~~~~a~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 345 (385)
..+.+.|+..+++. .+.+++...+ + +..+..+.+.|.+.|+.++|.++++.+.+
T Consensus 228 ~ll~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 228 GIHERFDRSITQLE---------------------EFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHTTCCGGGGH---------------------HHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCChHHHH---------------------HHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 88888887554432 2222222222 2 66677788888888888899988888765
Q ss_pred C
Q 040338 346 K 346 (385)
Q Consensus 346 ~ 346 (385)
+
T Consensus 287 ~ 287 (306)
T 3dra_A 287 K 287 (306)
T ss_dssp T
T ss_pred c
Confidence 3
No 115
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.50 E-value=5.3e-06 Score=68.07 Aligned_cols=157 Identities=10% Similarity=-0.025 Sum_probs=103.6
Q ss_pred cCChHHHHHHHHHHHHhccCC--CchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCc-c
Q 040338 65 VGNIKMALHLHGLVKKFYFVS--DESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDL-V 141 (385)
Q Consensus 65 ~~~~~~a~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~-~ 141 (385)
.|++++|...|+.+.+..... ....+..+..+|.+.|++++|+..|++..+..+. .+.. .
T Consensus 17 ~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~-----------------~~~~~~ 79 (225)
T 2yhc_A 17 DGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT-----------------HPNIDY 79 (225)
T ss_dssp HTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------------CTTHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-----------------CCcHHH
Confidence 799999999999999864221 1356778889999999999999999887654420 1111 1
Q ss_pred hHHHHHHHHH------------------hCCCchHHHHHHHHHHHCCCCCCHh-hH-----------------HHHHHHh
Q 040338 142 SWNTMISILT------------------RHGFGFETLCTFIELWNHGFGLSSM-LY-----------------ATAFSAR 185 (385)
Q Consensus 142 ~~~~li~~~~------------------~~~~~~~a~~~~~~m~~~g~~p~~~-t~-----------------~~ll~~~ 185 (385)
.+..+..++. ..|++++|+..|+++.+. .|+.. .. ..+...+
T Consensus 80 a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~ 157 (225)
T 2yhc_A 80 VMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYY 157 (225)
T ss_dssp HHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333443 357889999999998875 34322 21 1334456
Q ss_pred cCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc
Q 040338 186 ASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR 260 (385)
Q Consensus 186 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 260 (385)
.+.|++++|+..++.+++..+.... ....+..+..+|.+.|+.++|.+.++.+..
T Consensus 158 ~~~~~~~~A~~~~~~~l~~~p~~~~--------------------~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 158 TERGAWVAVVNRVEGMLRDYPDTQA--------------------TRDALPLMENAYRQMQMNAQAEKVAKIIAA 212 (225)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTTSHH--------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHcCcHHHHHHHHHHHHHHCcCCCc--------------------cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 6777888888888887776432110 113445666777777788888888877654
No 116
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.46 E-value=9.6e-07 Score=65.28 Aligned_cols=97 Identities=9% Similarity=-0.124 Sum_probs=84.6
Q ss_pred HHHHHHHHhcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCC-C-CCcchHHHHHHHHHhc
Q 040338 287 FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPS-K-PTCVIWGALLGACCSH 362 (385)
Q Consensus 287 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~-p~~~~~~~li~~~~~~ 362 (385)
.+......|.+.|++++|+..|++..+..+ ...+..+..+|.+.|++++|++.|++..+ . .+...|..+..+|...
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 94 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAM 94 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence 455666778888999999999999988887 88888999999999999999999998876 2 4567899999999999
Q ss_pred CChHHHHHHHHHHHhccccCC
Q 040338 363 YNTKLAELVMRNLLQLDVKVF 383 (385)
Q Consensus 363 g~~~~a~~~~~~~~~~~~~~~ 383 (385)
|++++|.+.|++.++.+|.+.
T Consensus 95 ~~~~~A~~~~~~al~l~P~~~ 115 (126)
T 4gco_A 95 REWSKAQRAYEDALQVDPSNE 115 (126)
T ss_dssp TCHHHHHHHHHHHHHHCTTCH
T ss_pred CCHHHHHHHHHHHHHHCcCCH
Confidence 999999999999999988753
No 117
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.45 E-value=7e-06 Score=70.35 Aligned_cols=142 Identities=9% Similarity=-0.093 Sum_probs=112.2
Q ss_pred HHHHHHHHcCCChhHHHHHHHhcccC-----C----hhhHHHHHHHHHhcCCCCchHHHH------------------HH
Q 040338 236 KALVTMYAEGGSTQKADLAFELMSRR-----N----MISWMVLISAFSQAGVLEKPRFFF------------------FF 288 (385)
Q Consensus 236 ~~li~~~~~~g~~~~A~~~~~~m~~~-----~----~~~~~~li~~~~~~g~~~~a~~~~------------------~~ 288 (385)
...+..+...|++++|..++++..+. + ...+..+...+...|++++|+..+ ++
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 34467788889999999999887652 1 123334666677778888888887 58
Q ss_pred HHHHHHhcccCChhhHHHHHHHHHhc-------cc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-------CC-cch
Q 040338 289 VSLLSGCSHSGPVTKGKHYFTAMAKF-------TY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-------PT-CVI 351 (385)
Q Consensus 289 ~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------p~-~~~ 351 (385)
+.+...|...|++++|...++++.+. .. ..++..+...|.+.|++++|.+.+++..+- +. ..+
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 89999999999999999999998841 11 668888999999999999999999877641 11 457
Q ss_pred HHHHHHHHHhcCC-hHHHHHHHHHHHh
Q 040338 352 WGALLGACCSHYN-TKLAELVMRNLLQ 377 (385)
Q Consensus 352 ~~~li~~~~~~g~-~~~a~~~~~~~~~ 377 (385)
|..+..+|.+.|+ +++|...+++...
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 8899999999995 6999999988764
No 118
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.45 E-value=9.3e-07 Score=71.00 Aligned_cols=134 Identities=10% Similarity=-0.027 Sum_probs=88.4
Q ss_pred CCChhHHHH---HHHhcccCChhhHHHHHHHHHhcCCCCchHHHH------------------HHHHHHHHhcccCChhh
Q 040338 245 GGSTQKADL---AFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------------------FFVSLLSGCSHSGPVTK 303 (385)
Q Consensus 245 ~g~~~~A~~---~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~------------------~~~~l~~~~~~~~~~~~ 303 (385)
.|++++|.+ .+..-......++..+...+...|++++|+..+ ++..+...+...|++++
T Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 84 (203)
T 3gw4_A 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDA 84 (203)
T ss_dssp --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 455555555 332211112344555555555555555555555 56666777777788888
Q ss_pred HHHHHHHHHhc------cc---hhhHHHHHHHHHccCCHHHHHHHHHhCCCC----CC----cchHHHHHHHHHhcCChH
Q 040338 304 GKHYFTAMAKF------TY---TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK----PT----CVIWGALLGACCSHYNTK 366 (385)
Q Consensus 304 a~~~~~~~~~~------~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----p~----~~~~~~li~~~~~~g~~~ 366 (385)
|...+++.... .. ...+..+...+...|++++|.+.+++.... ++ ..++..+...+...|+++
T Consensus 85 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 164 (203)
T 3gw4_A 85 ARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLL 164 (203)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHH
Confidence 88777776654 11 556777888999999999999999877541 22 234678888999999999
Q ss_pred HHHHHHHHHHhc
Q 040338 367 LAELVMRNLLQL 378 (385)
Q Consensus 367 ~a~~~~~~~~~~ 378 (385)
+|...+++..+.
T Consensus 165 ~A~~~~~~al~~ 176 (203)
T 3gw4_A 165 EAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887654
No 119
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.44 E-value=2.5e-06 Score=65.18 Aligned_cols=85 Identities=9% Similarity=-0.028 Sum_probs=64.2
Q ss_pred cCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHH
Q 040338 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWN 144 (385)
Q Consensus 65 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 144 (385)
.|++++|...|+...+.. +.+...|..+..+|.+.|++++|+..|++..+.+ +.+...|.
T Consensus 49 ~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-------------------P~~~~~~~ 108 (151)
T 3gyz_A 49 KGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-------------------KNDYTPVF 108 (151)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------------------SSCCHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-------------------CCCcHHHH
Confidence 788888888888887764 3366777778888888888888888887776554 34566777
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHC
Q 040338 145 TMISILTRHGFGFETLCTFIELWNH 169 (385)
Q Consensus 145 ~li~~~~~~~~~~~a~~~~~~m~~~ 169 (385)
.+..+|.+.|++++|...|++..+.
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7888888888888888888887764
No 120
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.44 E-value=2.8e-06 Score=64.85 Aligned_cols=133 Identities=7% Similarity=-0.156 Sum_probs=102.2
Q ss_pred hhhhHHHHHhhhCCCC---hhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHH
Q 040338 33 LIDDDYRVFCDIGPRY---LFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109 (385)
Q Consensus 33 ~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 109 (385)
++++|...|+.....+ ...+-.+-..|.. .|++++|.+.|++..+.. +-+..+|..+..+|.+.|++++|...
T Consensus 12 ~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~---~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~ 87 (150)
T 4ga2_A 12 DVERYIASVQGSTPSPRQKSIKGFYFAKLYYE---AKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVEC 87 (150)
T ss_dssp HHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHH---TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHhcccCcccHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHH
Confidence 6777777777665332 3455556666666 899999999999999875 34788999999999999999999999
Q ss_pred HHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHH-HHHHHHCCCCC-CHhhHHHHHHHhcC
Q 040338 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCT-FIELWNHGFGL-SSMLYATAFSARAS 187 (385)
Q Consensus 110 ~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~-~~~m~~~g~~p-~~~t~~~ll~~~~~ 187 (385)
|++..+.+ +.+..+|..+...|.+.|++++|... +++..+. .| +...|......+..
T Consensus 88 ~~~al~~~-------------------p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~ 146 (150)
T 4ga2_A 88 YRRSVELN-------------------PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDC 146 (150)
T ss_dssp HHHHHHHC-------------------TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHT
T ss_pred HHHHHHhC-------------------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHH
Confidence 99887655 35678899999999999999887665 5777764 55 55666666666655
Q ss_pred ccC
Q 040338 188 VYD 190 (385)
Q Consensus 188 ~~~ 190 (385)
.|+
T Consensus 147 ~G~ 149 (150)
T 4ga2_A 147 EGE 149 (150)
T ss_dssp CCC
T ss_pred hCc
Confidence 554
No 121
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.41 E-value=0.00024 Score=60.81 Aligned_cols=219 Identities=8% Similarity=-0.066 Sum_probs=151.5
Q ss_pred hHHHHHHHHHHHHcccchhhHHhhhhhHHHHHhhhC--CC-ChhhHHHHHHHHHhhhccC--ChHHHHHHHHHHHHhccC
Q 040338 10 LPIARKIHAQLISTCLISSIFLQLIDDDYRVFCDIG--PR-YLFTYNTMINGGVRCLCVG--NIKMALHLHGLVKKFYFV 84 (385)
Q Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~--~~~~a~~~~~~m~~~g~~ 84 (385)
+..+...+..+.+.+- ..++|..+++.+. .| +...||.=-..+.. .+ ++++++++++.+......
T Consensus 32 y~~~~~~~~a~~~~~e-------~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~---l~~~~~~eeL~~~~~~L~~nPk 101 (306)
T 3dra_A 32 YKQIMGLLLALMKAEE-------YSERALHITELGINELASHYTIWIYRFNILKN---LPNRNLYDELDWCEEIALDNEK 101 (306)
T ss_dssp HHHHHHHHHHHHHTTC-------CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT---CTTSCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCC-------CCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHH---cccccHHHHHHHHHHHHHHCcc
Confidence 3445555555555442 2346777777665 34 44556655555444 56 999999999999987543
Q ss_pred CCchHHHhHHHHH----Hhc---CChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCch
Q 040338 85 SDESIAKSSIDMH----VKC---GAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGF 157 (385)
Q Consensus 85 ~~~~~~~~li~~~----~~~---g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 157 (385)
+..+|+.--..+ ... +++++++.+++++.+.+ +.|-.+|+--...+.+.|+++
T Consensus 102 -~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-------------------pkny~aW~~R~~vl~~l~~~~ 161 (306)
T 3dra_A 102 -NYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-------------------PKNHHVWSYRKWLVDTFDLHN 161 (306)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-------------------TTCHHHHHHHHHHHHHTTCTT
T ss_pred -cHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-------------------CCCHHHHHHHHHHHHHhcccC
Confidence 667777766666 555 78999999999988766 478888888888888888888
Q ss_pred --HHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccC------ccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCC--
Q 040338 158 --ETLCTFIELWNHGFGLSSMLYATAFSARASVYD------LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNG-- 227 (385)
Q Consensus 158 --~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-- 227 (385)
++++.++++.+... -|...|+.-...+.+.+. ++++++.++.++...+ -|...|+-+-..+.+.|...
T Consensus 162 ~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~ 239 (306)
T 3dra_A 162 DAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQ 239 (306)
T ss_dssp CHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGG
T ss_pred hHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHH
Confidence 99999999988633 366666655555555555 7788888888888754 56667766666666666432
Q ss_pred -----------C---CchhhHHHHHHHHHHcCCChhHHHHHHHhccc
Q 040338 228 -----------I---ESSIQIGKALVTMYAEGGSTQKADLAFELMSR 260 (385)
Q Consensus 228 -----------~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 260 (385)
. ..+...+..+...|.+.|+.++|.++++.+.+
T Consensus 240 ~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 240 LEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp GHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 1 33556666777777777777777777777654
No 122
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.39 E-value=3.5e-06 Score=61.34 Aligned_cols=113 Identities=11% Similarity=0.023 Sum_probs=87.2
Q ss_pred chHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHH
Q 040338 87 ESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIEL 166 (385)
Q Consensus 87 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 166 (385)
...+..+...+...|++++|.+.|+++.+.+ +.+..++..+...+.+.|++++|..+++++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 69 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-------------------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------------------cCcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4677888888899999999999998876543 346678888889999999999999999998
Q ss_pred HHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHH
Q 040338 167 WNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMY 220 (385)
Q Consensus 167 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 220 (385)
.+.. +.+..++..+...+...|++++|...++.+.+..+ .+...+..+...+
T Consensus 70 ~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~ 121 (125)
T 1na0_A 70 LELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNAK 121 (125)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHH
Confidence 8752 33677788888889999999999999999888754 2333443443333
No 123
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.39 E-value=5.8e-06 Score=60.13 Aligned_cols=112 Identities=11% Similarity=0.032 Sum_probs=89.4
Q ss_pred hhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHH
Q 040338 49 LFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRL 128 (385)
Q Consensus 49 ~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a 128 (385)
...|..+...+.. .|++++|.+.++++.+.. +.+..++..+...+.+.|++++|...|+++.+.+
T Consensus 9 ~~~~~~~~~~~~~---~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~----------- 73 (125)
T 1na0_A 9 AEAWYNLGNAYYK---QGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD----------- 73 (125)
T ss_dssp HHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----------
Confidence 4567777777666 899999999999999874 4467888999999999999999999998876544
Q ss_pred HHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-CHhhHHHHHHHh
Q 040338 129 LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGL-SSMLYATAFSAR 185 (385)
Q Consensus 129 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~ 185 (385)
+.+..++..+...+...|++++|...|+++.+. .| +...+..+...+
T Consensus 74 --------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 74 --------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAKQNLGNAK 121 (125)
T ss_dssp --------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred --------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHH
Confidence 356778899999999999999999999999875 34 344444444333
No 124
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.36 E-value=6.5e-06 Score=60.79 Aligned_cols=100 Identities=10% Similarity=-0.019 Sum_probs=60.2
Q ss_pred CchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHH
Q 040338 86 DESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIE 165 (385)
Q Consensus 86 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 165 (385)
+...+..+...+.+.|++++|...|++..+.+ +.+..++..+...+...|++++|+..+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 75 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-------------------PKDAKLYSNRAACYTKLLEFQLALKDCEE 75 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-------------------TTCHHHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------------------CCcHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 34555566666666666666666666655443 23455566666666666666666666666
Q ss_pred HHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhC
Q 040338 166 LWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHME 205 (385)
Q Consensus 166 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 205 (385)
..+.. +.+...+..+..++.+.|++++|.+.++...+..
T Consensus 76 a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 76 CIQLE-PTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhC-CCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 65531 2245555666666666666666666666666553
No 125
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.35 E-value=8.6e-06 Score=69.76 Aligned_cols=161 Identities=11% Similarity=-0.060 Sum_probs=114.6
Q ss_pred cCChHHHHHHHHHHHHhcc-CCCc----hHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCC
Q 040338 65 VGNIKMALHLHGLVKKFYF-VSDE----SIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERD 139 (385)
Q Consensus 65 ~~~~~~a~~~~~~m~~~g~-~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~ 139 (385)
.|++++|..++++..+... .|+. ..+..+...+...|++++|+..|++..+... . .++
T Consensus 88 ~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~---------------~--~~~ 150 (293)
T 3u3w_A 88 QKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQL---------------T--GID 150 (293)
T ss_dssp TTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCC---------------C--CSC
T ss_pred HhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhc---------------c--ccc
Confidence 8999999999999987421 2221 1334466677777899999999988754221 0 122
Q ss_pred ----cchHHHHHHHHHhCCCchHHHHHHHHHHH----C-CCCCC-HhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCc
Q 040338 140 ----LVSWNTMISILTRHGFGFETLCTFIELWN----H-GFGLS-SMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLD 209 (385)
Q Consensus 140 ----~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~-g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 209 (385)
..+|+.+...|...|++++|+..|++..+ . +..|. ..+|..+...|.+.|++++|...+++.++.....+
T Consensus 151 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~ 230 (293)
T 3u3w_A 151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN 230 (293)
T ss_dssp TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcC
Confidence 23689999999999999999999999874 1 22232 34788899999999999999999998876421110
Q ss_pred hHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCC-hhHHHHHHHhcc
Q 040338 210 VFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGS-TQKADLAFELMS 259 (385)
Q Consensus 210 ~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~ 259 (385)
. ...-..+|..+...|.+.|+ .++|.+.|++..
T Consensus 231 ~-----------------~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 231 S-----------------MALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp B-----------------CTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred c-----------------HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 0 01123456778888888885 588888887665
No 126
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.34 E-value=1.7e-06 Score=69.39 Aligned_cols=162 Identities=9% Similarity=-0.096 Sum_probs=114.6
Q ss_pred cCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCC--CCcch
Q 040338 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE--RDLVS 142 (385)
Q Consensus 65 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~ 142 (385)
.|++++|.++++.+.. .......++..+...+...|++++|...+++.. .++.+... ....+
T Consensus 5 ~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al---------------~~~~~~~~~~~~~~~ 68 (203)
T 3gw4_A 5 AHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQ---------------QQAQKSGDHTAEHRA 68 (203)
T ss_dssp --CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHTTCCHHHHHHH
T ss_pred cccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH---------------HHHHHcCCcHHHHHH
Confidence 6999999996655543 222356788889999999999999999986643 33333322 23557
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHC----CCCC--CHhhHHHHHHHhcCccCccchhhHHHHHHHhCCC-CchHHHHH
Q 040338 143 WNTMISILTRHGFGFETLCTFIELWNH----GFGL--SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPS-LDVFVGSG 215 (385)
Q Consensus 143 ~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ 215 (385)
++.+...+...|++++|...+++..+. +-.| ....+..+...+...|++++|...+++..+.... .+..
T Consensus 69 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---- 144 (203)
T 3gw4_A 69 LHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQV---- 144 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchH----
Confidence 888889999999999999999887653 2122 2345777888899999999999999988754211 1111
Q ss_pred HHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc
Q 040338 216 LIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR 260 (385)
Q Consensus 216 li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 260 (385)
.-..++..+...+...|++++|...+++..+
T Consensus 145 --------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 145 --------------AIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp --------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 1123456778888899999999999887754
No 127
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.34 E-value=3.7e-06 Score=72.08 Aligned_cols=144 Identities=9% Similarity=-0.117 Sum_probs=111.2
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHhccc--CC-------hhhHHHHHHHHHhcCCCCchHHHH------------------
Q 040338 234 IGKALVTMYAEGGSTQKADLAFELMSR--RN-------MISWMVLISAFSQAGVLEKPRFFF------------------ 286 (385)
Q Consensus 234 ~~~~li~~~~~~g~~~~A~~~~~~m~~--~~-------~~~~~~li~~~~~~g~~~~a~~~~------------------ 286 (385)
.+...+..+...|++++|.+.+++..+ +. ...+..+...+...|++++|+..+
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 445567778888999999998876654 11 123344566677788888888876
Q ss_pred HHHHHHHHhcccCChhhHHHHHHHHHhc---cc------hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-C-------Cc
Q 040338 287 FFVSLLSGCSHSGPVTKGKHYFTAMAKF---TY------TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-P-------TC 349 (385)
Q Consensus 287 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p-------~~ 349 (385)
+|+.+...|...|++++|...+++..+. .. ..++..+...|.+.|++++|.+.+++..+- + -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888899999999999999999998732 11 268888999999999999999999877541 1 14
Q ss_pred chHHHHHHHHHhcCChHHH-HHHHHHHHh
Q 040338 350 VIWGALLGACCSHYNTKLA-ELVMRNLLQ 377 (385)
Q Consensus 350 ~~~~~li~~~~~~g~~~~a-~~~~~~~~~ 377 (385)
.+|..+...|.+.|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 5788899999999999999 777877653
No 128
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.33 E-value=9.4e-06 Score=62.58 Aligned_cols=130 Identities=8% Similarity=-0.070 Sum_probs=100.9
Q ss_pred hhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHH
Q 040338 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLL 129 (385)
Q Consensus 50 ~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~ 129 (385)
..|..+-..+.. .|++++|...++...+.. +.+..++..+..++...|++++|...+++..+.+
T Consensus 14 ~~~~~~a~~~~~---~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~------------ 77 (166)
T 1a17_A 14 EELKTQANDYFK---AKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD------------ 77 (166)
T ss_dssp HHHHHHHHHHHH---TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHH---ccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------
Confidence 345555555555 899999999999998874 3467888999999999999999999998876544
Q ss_pred HHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhH--HHHHHHhcCccCccchhhHHHHHHH
Q 040338 130 IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLY--ATAFSARASVYDLEWGPHLHSRVVH 203 (385)
Q Consensus 130 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~--~~ll~~~~~~~~~~~a~~~~~~~~~ 203 (385)
+.+..+|..+..++...|++++|...|++..+... .+...+ ......+...|++++|...+.....
T Consensus 78 -------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 78 -------KKYIKGYYRRAASNMALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp -------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 35677888999999999999999999999987532 234444 3344447778999999988887654
No 129
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.30 E-value=5.6e-06 Score=60.80 Aligned_cols=97 Identities=9% Similarity=-0.029 Sum_probs=48.9
Q ss_pred hHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHH
Q 040338 88 SIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELW 167 (385)
Q Consensus 88 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 167 (385)
..+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 73 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-------------------PANAVYFCNRAAAYSKLGNYAGAVQDCERAI 73 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-------------------CCCHHHHHHHHHHHHHhhchHHHHHHHHHHH
Confidence 344445555555555555555555443322 2234445555555555555555555555554
Q ss_pred HCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHh
Q 040338 168 NHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHM 204 (385)
Q Consensus 168 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 204 (385)
+.. +.+...+..+...+...|++++|...++...+.
T Consensus 74 ~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 74 CID-PAYSKAYGRMGLALSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcC-ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 431 123444455555555555555555555555554
No 130
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.29 E-value=4.4e-05 Score=65.28 Aligned_cols=173 Identities=10% Similarity=-0.070 Sum_probs=118.3
Q ss_pred HHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCC-----chHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchH
Q 040338 52 YNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSD-----ESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGII 126 (385)
Q Consensus 52 ~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 126 (385)
+...+..+.. .|++++|.+.+....+.....+ ...+..+...+...|++++|+..+++..+...
T Consensus 78 l~~~~~~~~~---~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-------- 146 (293)
T 2qfc_A 78 FKDQVIMLCK---QKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQL-------- 146 (293)
T ss_dssp HHHHHHHHHH---TTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCC--------
T ss_pred HHHHHHHHHH---hhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh--------
Confidence 3344445444 8999999999998887532211 12234456667788999999999987654321
Q ss_pred HHHHHhcCCCCCC--cchHHHHHHHHHhCCCchHHHHHHHHHHHC-CCCCC-----HhhHHHHHHHhcCccCccchhhHH
Q 040338 127 RLLIMFQKMPERD--LVSWNTMISILTRHGFGFETLCTFIELWNH-GFGLS-----SMLYATAFSARASVYDLEWGPHLH 198 (385)
Q Consensus 127 ~a~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~-----~~t~~~ll~~~~~~~~~~~a~~~~ 198 (385)
....+. ..+|+.+...|...|++++|+..|++..+. ...|+ ..++..+...|.+.|++++|...+
T Consensus 147 -------~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~ 219 (293)
T 2qfc_A 147 -------TGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQV 219 (293)
T ss_dssp -------CSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -------cCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHH
Confidence 000122 448889999999999999999999998732 01222 258888999999999999999999
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHH-HHHHHhcc
Q 040338 199 SRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKA-DLAFELMS 259 (385)
Q Consensus 199 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~m~ 259 (385)
++.++.....+. ...-..+|..+...|.+.|+.++| ...+++..
T Consensus 220 ~kal~~~~~~~~-----------------~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 220 NKAIEISCRINS-----------------MALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTB-----------------CSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCc-----------------HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 998764211000 011234567778888888899998 66676554
No 131
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.29 E-value=3.2e-06 Score=60.32 Aligned_cols=96 Identities=13% Similarity=-0.033 Sum_probs=83.0
Q ss_pred HHHHHHHhcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-C---CcchHHHHHHHHHh
Q 040338 288 FVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-P---TCVIWGALLGACCS 361 (385)
Q Consensus 288 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p---~~~~~~~li~~~~~ 361 (385)
+..+...+...|++++|...+++..+..+ ...+..+...+...|++++|.+.|++..+. | +...|..+...|..
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~ 88 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRY 88 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHH
Confidence 34456677788999999999999888776 777888999999999999999999988764 4 46788999999999
Q ss_pred c-CChHHHHHHHHHHHhccccCC
Q 040338 362 H-YNTKLAELVMRNLLQLDVKVF 383 (385)
Q Consensus 362 ~-g~~~~a~~~~~~~~~~~~~~~ 383 (385)
. |++++|.+.+++..+..|.++
T Consensus 89 ~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 89 IEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp CSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HhCCHHHHHHHHHHHhhcccCCC
Confidence 9 999999999999999988765
No 132
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.29 E-value=6.5e-06 Score=58.62 Aligned_cols=101 Identities=9% Similarity=-0.093 Sum_probs=65.6
Q ss_pred CchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHH
Q 040338 86 DESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIE 165 (385)
Q Consensus 86 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 165 (385)
+...+..+...+.+.|++++|...|++..+.+ +.+...|..+...+...|++++|...|++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 65 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-------------------PEESKYWLMKGKALYNLERYEEAVDCYNY 65 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-------------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-------------------cCCHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 34556666667777777777777776654433 23455666667777777777777777777
Q ss_pred HHHCCCCC--CHhhHHHHHHHhcCc-cCccchhhHHHHHHHhCC
Q 040338 166 LWNHGFGL--SSMLYATAFSARASV-YDLEWGPHLHSRVVHMEP 206 (385)
Q Consensus 166 m~~~g~~p--~~~t~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~ 206 (385)
..+.. +. +...+..+..++... |++++|.+.++...+..+
T Consensus 66 a~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 66 VINVI-EDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHTS-CCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHhC-cccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 76642 12 355666667777777 777777777777766644
No 133
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.28 E-value=1.4e-05 Score=58.61 Aligned_cols=119 Identities=13% Similarity=0.013 Sum_probs=94.1
Q ss_pred hhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHH
Q 040338 49 LFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRL 128 (385)
Q Consensus 49 ~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a 128 (385)
...|..+...+.. .|++++|...++...+.. +.+...+..+..++...|++++|...+++..+.+
T Consensus 12 ~~~~~~~~~~~~~---~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----------- 76 (131)
T 2vyi_A 12 AERLKTEGNEQMK---VENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID----------- 76 (131)
T ss_dssp HHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------
T ss_pred hHHHHHHHHHHHH---ccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-----------
Confidence 4455666666555 899999999999998864 3467888999999999999999999998876544
Q ss_pred HHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCc
Q 040338 129 LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDL 191 (385)
Q Consensus 129 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 191 (385)
+.+...+..+...+...|++++|...|++..+.. +.+...+..+..++.+.|++
T Consensus 77 --------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 77 --------PAYSKAYGRMGLALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp --------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred --------ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 3567788899999999999999999999998752 22556666777777666654
No 134
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.27 E-value=6.5e-06 Score=63.51 Aligned_cols=132 Identities=9% Similarity=-0.054 Sum_probs=99.2
Q ss_pred chHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHH
Q 040338 87 ESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIEL 166 (385)
Q Consensus 87 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 166 (385)
...+..+...+...|++++|...|++..+.+ +.+..++..+...+...|++++|...+++.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 73 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-------------------PSNAIYYGNRSLAYLRTECYGYALGDATRA 73 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------------------CCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4557777888889999999999998876544 356778888999999999999999999998
Q ss_pred HHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCC
Q 040338 167 WNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGG 246 (385)
Q Consensus 167 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g 246 (385)
.+.. +.+...+..+..++...|++++|...++...+..+. +...+ .+-.....+.+.|
T Consensus 74 ~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~--------------------~~~~~~~~~~~~~ 131 (166)
T 1a17_A 74 IELD-KKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH-DKDAK--------------------MKYQECNKIVKQK 131 (166)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHH--------------------HHHHHHHHHHHHH
T ss_pred HHhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHH--------------------HHHHHHHHHHHHH
Confidence 8752 335677888888899999999999999999887542 22222 1122233355667
Q ss_pred ChhHHHHHHHhcc
Q 040338 247 STQKADLAFELMS 259 (385)
Q Consensus 247 ~~~~A~~~~~~m~ 259 (385)
++++|+..+....
T Consensus 132 ~~~~A~~~~~~~~ 144 (166)
T 1a17_A 132 AFERAIAGDEHKR 144 (166)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHcccchH
Confidence 8888888887654
No 135
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.27 E-value=1.9e-05 Score=58.13 Aligned_cols=116 Identities=8% Similarity=-0.050 Sum_probs=92.7
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHH
Q 040338 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLI 217 (385)
Q Consensus 138 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 217 (385)
.+...|..+...+.+.|++++|...|++..+.. +.+...+..+..++...|++++|.+.++...+....
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---------- 82 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT---------- 82 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT----------
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC----------
Confidence 456678889999999999999999999998752 236778888999999999999999999999887532
Q ss_pred HHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc--C-ChhhHHHHHHHHHhcC
Q 040338 218 DMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR--R-NMISWMVLISAFSQAG 277 (385)
Q Consensus 218 ~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g 277 (385)
+...+..+...+.+.|++++|...|++..+ | +...+..+...+...|
T Consensus 83 -------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 83 -------------FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp -------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred -------------chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 234456777788888999999999998865 3 4466666777766654
No 136
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.25 E-value=1.8e-05 Score=58.26 Aligned_cols=84 Identities=7% Similarity=-0.074 Sum_probs=52.1
Q ss_pred cCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHH
Q 040338 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWN 144 (385)
Q Consensus 65 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 144 (385)
.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++|+..|++..+.+ +.+...|.
T Consensus 26 ~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-------------------p~~~~a~~ 85 (126)
T 4gco_A 26 KGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-------------------SKFIKGYI 85 (126)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------TTCHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-------------------hhhhHHHH
Confidence 566666666666666553 2355666666666666666666666666554433 24455666
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHH
Q 040338 145 TMISILTRHGFGFETLCTFIELWN 168 (385)
Q Consensus 145 ~li~~~~~~~~~~~a~~~~~~m~~ 168 (385)
.+..++...|++++|+..|++..+
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666666666666666666666655
No 137
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.25 E-value=2.2e-06 Score=75.11 Aligned_cols=147 Identities=7% Similarity=-0.134 Sum_probs=115.5
Q ss_pred hhhhHHHHHhhhC--CC-ChhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCC--------------chHHHhHHH
Q 040338 33 LIDDDYRVFCDIG--PR-YLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSD--------------ESIAKSSID 95 (385)
Q Consensus 33 ~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~--------------~~~~~~li~ 95 (385)
++++|...|+... .| +...|..+-..+.. .|++++|...|++..+...... ..+|..+..
T Consensus 128 ~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~---~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 128 SFEKAKESWEMNSEEKLEQSTIVKERGTVYFK---EGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEECCCCGGGCCHHHHHHHHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccchhcCCHHHHHHHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 6666766666543 22 34566666666555 8999999999999998743221 488999999
Q ss_pred HHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-C
Q 040338 96 MHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGL-S 174 (385)
Q Consensus 96 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~ 174 (385)
+|.+.|++++|+..|++..+.+ +.+...|..+..+|...|++++|+..|++..+. .| +
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~-------------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~ 263 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELD-------------------SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNN 263 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSC
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-------------------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCC
Confidence 9999999999999998876655 457788999999999999999999999999885 44 5
Q ss_pred HhhHHHHHHHhcCccCccch-hhHHHHHHH
Q 040338 175 SMLYATAFSARASVYDLEWG-PHLHSRVVH 203 (385)
Q Consensus 175 ~~t~~~ll~~~~~~~~~~~a-~~~~~~~~~ 203 (385)
...+..+..++.+.|+.+++ ...++.|..
T Consensus 264 ~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 264 KAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888889999999888 456666654
No 138
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.25 E-value=3e-06 Score=66.55 Aligned_cols=118 Identities=10% Similarity=0.075 Sum_probs=63.3
Q ss_pred HcCCChhHHHHHHHhccc--C-ChhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcccCChhhHHHHHHHHHhccc--h
Q 040338 243 AEGGSTQKADLAFELMSR--R-NMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--T 317 (385)
Q Consensus 243 ~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~ 317 (385)
...|++++|+..++...+ | +...+..+...|.. .|++++|...+++..+..+ .
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----------------------~~~~~~A~~~~~~al~~~p~~~ 78 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLW----------------------QNDYSNSLLAYRQALQLRGENA 78 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHH----------------------TTCHHHHHHHHHHHHHHHCSCH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----------------------cCCHHHHHHHHHHHHHcCCCCH
Confidence 345566666666665543 2 33444445555544 4555555555555555544 4
Q ss_pred hhHHHHHHH-HHccCCH--HHHHHHHHhCCCC-C-CcchHHHHHHHHHhcCChHHHHHHHHHHHhccccC
Q 040338 318 CYFVCMVDL-LGLSGLL--GEAKKLIDEMPSK-P-TCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKV 382 (385)
Q Consensus 318 ~~~~~li~~-~~~~g~~--~~A~~~~~~m~~~-p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 382 (385)
..+..+..+ +...|++ ++|.+.|++.... | +...+..+...|...|++++|...++++.+..|.+
T Consensus 79 ~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 79 ELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 445555555 5556665 6666666655442 3 34455556666666666666666666666665544
No 139
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.24 E-value=4e-06 Score=63.85 Aligned_cols=95 Identities=13% Similarity=-0.064 Sum_probs=67.4
Q ss_pred HHHHHHHhcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-C-CcchHHHHHHHHHhcC
Q 040338 288 FVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-P-TCVIWGALLGACCSHY 363 (385)
Q Consensus 288 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p-~~~~~~~li~~~~~~g 363 (385)
+..+...+...|++++|...|+......+ ...+..+..+|...|++++|++.|++.... | +...|..+..+|...|
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g 103 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXG 103 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcC
Confidence 33444555566677777777777776666 666777777788888888888888776542 3 4566777777888888
Q ss_pred ChHHHHHHHHHHHhccccC
Q 040338 364 NTKLAELVMRNLLQLDVKV 382 (385)
Q Consensus 364 ~~~~a~~~~~~~~~~~~~~ 382 (385)
++++|...|++.++..|.+
T Consensus 104 ~~~~A~~~~~~al~~~p~~ 122 (148)
T 2vgx_A 104 ELAEAESGLFLAQELIANX 122 (148)
T ss_dssp CHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHCcCC
Confidence 8888888888877766653
No 140
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.23 E-value=2.7e-06 Score=62.94 Aligned_cols=96 Identities=7% Similarity=-0.063 Sum_probs=79.9
Q ss_pred HHHHHHHHhcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-CC--------cchHHHH
Q 040338 287 FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-PT--------CVIWGAL 355 (385)
Q Consensus 287 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p~--------~~~~~~l 355 (385)
++..+...+.+.|++++|+..|++..+..+ ...+..+..+|.+.|++++|++.+++..+. |+ ..+|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 456677888889999999999999988877 788888999999999999999999887652 21 2367778
Q ss_pred HHHHHhcCChHHHHHHHHHHHhccccC
Q 040338 356 LGACCSHYNTKLAELVMRNLLQLDVKV 382 (385)
Q Consensus 356 i~~~~~~g~~~~a~~~~~~~~~~~~~~ 382 (385)
..++...|++++|++.|++.++..+.|
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~~~~~~ 116 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLSEFRDP 116 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSCCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCcCH
Confidence 888999999999999999988766554
No 141
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.22 E-value=4.3e-06 Score=63.09 Aligned_cols=95 Identities=13% Similarity=-0.065 Sum_probs=73.3
Q ss_pred HHHHHHhcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-C-CcchHHHHHHHHHhcCC
Q 040338 289 VSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-P-TCVIWGALLGACCSHYN 364 (385)
Q Consensus 289 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p-~~~~~~~li~~~~~~g~ 364 (385)
..+...+...|++++|...|+......+ ...+..+..+|.+.|++++|+..|++.... | +...|..+..+|...|+
T Consensus 22 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 101 (142)
T 2xcb_A 22 YALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGD 101 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCC
Confidence 3445556667778888888888877777 777778888888888888888888877652 3 45667788888888888
Q ss_pred hHHHHHHHHHHHhccccCC
Q 040338 365 TKLAELVMRNLLQLDVKVF 383 (385)
Q Consensus 365 ~~~a~~~~~~~~~~~~~~~ 383 (385)
+++|...+++..+..|.++
T Consensus 102 ~~~A~~~~~~al~~~p~~~ 120 (142)
T 2xcb_A 102 LDGAESGFYSARALAAAQP 120 (142)
T ss_dssp HHHHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHHHHHhCCCCc
Confidence 8888888888888776543
No 142
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.21 E-value=5e-06 Score=65.24 Aligned_cols=120 Identities=7% Similarity=-0.082 Sum_probs=82.5
Q ss_pred cCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHH
Q 040338 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWN 144 (385)
Q Consensus 65 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 144 (385)
.|++++|...++...+.. +.+...+..+...|...|++++|...|++..+.+ +.+...+.
T Consensus 23 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-------------------p~~~~~~~ 82 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-------------------GENAELYA 82 (177)
T ss_dssp ----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------------CSCHHHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------------------CCCHHHHH
Confidence 577777777777777654 3356777777788888888888888887765443 24555666
Q ss_pred HHHHH-HHhCCCc--hHHHHHHHHHHHCCCCC-CHhhHHHHHHHhcCccCccchhhHHHHHHHhCC
Q 040338 145 TMISI-LTRHGFG--FETLCTFIELWNHGFGL-SSMLYATAFSARASVYDLEWGPHLHSRVVHMEP 206 (385)
Q Consensus 145 ~li~~-~~~~~~~--~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 206 (385)
.+..+ +...|++ ++|...|++..+. .| +...+..+...+...|++++|...++...+..+
T Consensus 83 ~la~~l~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 83 ALATVLYYQASQHMTAQTRAMIDKALAL--DSNEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 66666 6677777 8888888877764 33 456666777777788888888888888777654
No 143
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.19 E-value=2e-05 Score=63.93 Aligned_cols=128 Identities=9% Similarity=0.011 Sum_probs=111.2
Q ss_pred HHHHHHHhccc-CChhhHHHHHHHHHhcCCCCchHHHH----------HHHHHHHHhcccC----ChhhHHHHHHHHHhc
Q 040338 250 KADLAFELMSR-RNMISWMVLISAFSQAGVLEKPRFFF----------FFVSLLSGCSHSG----PVTKGKHYFTAMAKF 314 (385)
Q Consensus 250 ~A~~~~~~m~~-~~~~~~~~li~~~~~~g~~~~a~~~~----------~~~~l~~~~~~~~----~~~~a~~~~~~~~~~ 314 (385)
+|+..|++..+ .+...+..|...|...+++++|+..| ++..+...|.. + +.++|.+.|++..+.
T Consensus 4 eA~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~ 82 (212)
T 3rjv_A 4 EPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA 82 (212)
T ss_dssp CTTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC
Confidence 45666666655 47788889999999999999999999 77778888887 6 899999999999988
Q ss_pred cchhhHHHHHHHHHc----cCCHHHHHHHHHhCCCCCC----cchHHHHHHHHHh----cCChHHHHHHHHHHHhc
Q 040338 315 TYTCYFVCMVDLLGL----SGLLGEAKKLIDEMPSKPT----CVIWGALLGACCS----HYNTKLAELVMRNLLQL 378 (385)
Q Consensus 315 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~----~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~ 378 (385)
+.+..+..|...|.. .+++++|.+.|++..+..+ ...+..|...|.. .+++++|..++++..+.
T Consensus 83 g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 83 GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL 158 (212)
T ss_dssp TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 888888888888887 8999999999999988644 7889999999998 88999999999999887
No 144
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.17 E-value=7.1e-06 Score=63.54 Aligned_cols=96 Identities=14% Similarity=0.013 Sum_probs=63.0
Q ss_pred HHHHHHHhcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-C-CcchHHHHHHHHHhcC
Q 040338 288 FVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-P-TCVIWGALLGACCSHY 363 (385)
Q Consensus 288 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p-~~~~~~~li~~~~~~g 363 (385)
+..+...+...|++++|...|++..+..+ ...+..+..+|.+.|++++|+..|++.... | +...|..+..+|...|
T Consensus 14 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 93 (164)
T 3sz7_A 14 LKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMA 93 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Confidence 44455555666666777777777666655 666666677777777777777777666542 3 3556666777777777
Q ss_pred ChHHHHHHHHHHHhccccCC
Q 040338 364 NTKLAELVMRNLLQLDVKVF 383 (385)
Q Consensus 364 ~~~~a~~~~~~~~~~~~~~~ 383 (385)
++++|...+++.++..|.+.
T Consensus 94 ~~~~A~~~~~~al~~~p~~~ 113 (164)
T 3sz7_A 94 DYKGAKEAYEKGIEAEGNGG 113 (164)
T ss_dssp CHHHHHHHHHHHHHHHSSSC
T ss_pred CHHHHHHHHHHHHHhCCCch
Confidence 77777777777776666543
No 145
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.15 E-value=3e-05 Score=58.35 Aligned_cols=85 Identities=8% Similarity=-0.173 Sum_probs=73.4
Q ss_pred cCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHH
Q 040338 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWN 144 (385)
Q Consensus 65 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 144 (385)
.|++++|...|+...+.. +.+...|..+..+|.+.|++++|...|++..+.+ +.+...|.
T Consensus 31 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------------------p~~~~~~~ 90 (142)
T 2xcb_A 31 AGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-------------------INEPRFPF 90 (142)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------TTCTHHHH
T ss_pred HccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-------------------CCCcHHHH
Confidence 899999999999998875 3477888889999999999999999998876655 35677888
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHC
Q 040338 145 TMISILTRHGFGFETLCTFIELWNH 169 (385)
Q Consensus 145 ~li~~~~~~~~~~~a~~~~~~m~~~ 169 (385)
.+..++...|++++|...|+...+.
T Consensus 91 ~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 91 HAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8999999999999999999998764
No 146
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.15 E-value=5e-06 Score=60.86 Aligned_cols=94 Identities=12% Similarity=-0.041 Sum_probs=77.4
Q ss_pred HHHHHhcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-C-CcchHHHHHHHHHhcCCh
Q 040338 290 SLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-P-TCVIWGALLGACCSHYNT 365 (385)
Q Consensus 290 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p-~~~~~~~li~~~~~~g~~ 365 (385)
.+...+.+.|++++|...+++..+..+ ...+..+..++...|++++|+..|++..+. | +...+..+..+|...|++
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~ 101 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 101 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 345566788999999999999998887 888888999999999999999999988763 5 566888999999999999
Q ss_pred HHHHHHHHHHHhccccCC
Q 040338 366 KLAELVMRNLLQLDVKVF 383 (385)
Q Consensus 366 ~~a~~~~~~~~~~~~~~~ 383 (385)
++|...+++.++.+|..+
T Consensus 102 ~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 102 NAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHhCcCCC
Confidence 999999999999888654
No 147
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.15 E-value=3.6e-05 Score=58.46 Aligned_cols=96 Identities=9% Similarity=-0.119 Sum_probs=77.0
Q ss_pred hHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHH
Q 040338 51 TYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLI 130 (385)
Q Consensus 51 ~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~ 130 (385)
.+..+-..+.. .|++++|...|+...+.. +.+...|..+..+|...|++++|+..|++....+
T Consensus 23 ~~~~~g~~~~~---~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~------------- 85 (148)
T 2vgx_A 23 QLYSLAFNQYQ---SGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD------------- 85 (148)
T ss_dssp HHHHHHHHHHH---TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------------
T ss_pred HHHHHHHHHHH---cCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-------------
Confidence 44444445444 899999999999998864 3477888888899999999999999998876554
Q ss_pred HhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHC
Q 040338 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169 (385)
Q Consensus 131 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 169 (385)
+.+...|..+..+|...|++++|...|++..+.
T Consensus 86 ------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 86 ------IXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp ------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 356678888889999999999999999988764
No 148
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.13 E-value=0.00016 Score=65.31 Aligned_cols=197 Identities=9% Similarity=-0.105 Sum_probs=128.9
Q ss_pred HHHHHhcCChhHHHHHHHhccCCCccccc-----cchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHH
Q 040338 94 IDMHVKCGAVDYAESAFLRMLNPSLFCWK-----FGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWN 168 (385)
Q Consensus 94 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 168 (385)
...+.+.|++++|++.|.++.+....... +....... .....+..+...|...|++++|.+.+..+..
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRN-------EQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHH-------HHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhh-------hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45567889999999999887553320000 00000000 0012367788999999999999999988765
Q ss_pred CC-CCCCH----hhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHH
Q 040338 169 HG-FGLSS----MLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYA 243 (385)
Q Consensus 169 ~g-~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~ 243 (385)
.- -.++. .+.+.+-..+...|+.+.+..+++....... +.++ ...-..++..+...|.
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------------~~~~--~~~~~~~~~~la~~~~ 146 (434)
T 4b4t_Q 84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAK---------------REKR--VFLKHSLSIKLATLHY 146 (434)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHH---------------HSSC--CSSHHHHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH---------------HhCc--cHHHHHHHHHHHHHHH
Confidence 31 11222 2233344455667888999988887765311 1100 0112345567778888
Q ss_pred cCCChhHHHHHHHhccc--------C-ChhhHHHHHHHHHhcCCCCchHHHH-------------------HHHHHHHHh
Q 040338 244 EGGSTQKADLAFELMSR--------R-NMISWMVLISAFSQAGVLEKPRFFF-------------------FFVSLLSGC 295 (385)
Q Consensus 244 ~~g~~~~A~~~~~~m~~--------~-~~~~~~~li~~~~~~g~~~~a~~~~-------------------~~~~l~~~~ 295 (385)
..|++++|..+++.... + ...++..++..|...|++++|...+ .+..+...+
T Consensus 147 ~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~ 226 (434)
T 4b4t_Q 147 QKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILH 226 (434)
T ss_dssp HHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHT
T ss_pred HccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Confidence 88899999999887653 1 2357778888888999998888877 566777788
Q ss_pred cccCChhhHHHHHHHHHhc
Q 040338 296 SHSGPVTKGKHYFTAMAKF 314 (385)
Q Consensus 296 ~~~~~~~~a~~~~~~~~~~ 314 (385)
...+++++|...|.+....
T Consensus 227 ~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 227 CEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp TSSSCHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHH
Confidence 8889999998888777654
No 149
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.13 E-value=1.2e-05 Score=57.75 Aligned_cols=95 Identities=8% Similarity=-0.064 Sum_probs=80.6
Q ss_pred HHHHHHHhcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-C-CcchHHHHHHHHHhcC
Q 040338 288 FVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-P-TCVIWGALLGACCSHY 363 (385)
Q Consensus 288 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p-~~~~~~~li~~~~~~g 363 (385)
+..+...+...|++++|...++......+ ...+..+...+...|++++|...+++.... | +...+..+..+|...|
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 86 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 86 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh
Confidence 45566777788999999999999888776 777888889999999999999999887653 4 5667888999999999
Q ss_pred ChHHHHHHHHHHHhccccC
Q 040338 364 NTKLAELVMRNLLQLDVKV 382 (385)
Q Consensus 364 ~~~~a~~~~~~~~~~~~~~ 382 (385)
++++|...+++..+.+|.+
T Consensus 87 ~~~~A~~~~~~~~~~~~~~ 105 (118)
T 1elw_A 87 RFEEAKRTYEEGLKHEANN 105 (118)
T ss_dssp CHHHHHHHHHHHHTTCTTC
T ss_pred hHHHHHHHHHHHHHcCCCC
Confidence 9999999999999887764
No 150
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.12 E-value=3.3e-05 Score=69.94 Aligned_cols=179 Identities=8% Similarity=-0.137 Sum_probs=126.7
Q ss_pred HHHHhCCCchHHHHHHHHHHHCCCCC-CH---------------hhHHHHHHHhcCccCccchhhHHHHHHHhCCC-Cch
Q 040338 148 SILTRHGFGFETLCTFIELWNHGFGL-SS---------------MLYATAFSARASVYDLEWGPHLHSRVVHMEPS-LDV 210 (385)
Q Consensus 148 ~~~~~~~~~~~a~~~~~~m~~~g~~p-~~---------------~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~ 210 (385)
..+.+.|++++|++.|....+..... +. ..+..+...|...|++++|.+.+..+...-.. ++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 45678899999999999998753221 11 23677889999999999999999887764211 111
Q ss_pred HHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc-----CC----hhhHHHHHHHHHhcCCCCc
Q 040338 211 FVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR-----RN----MISWMVLISAFSQAGVLEK 281 (385)
Q Consensus 211 ~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~ 281 (385)
.+- ..+.+.+...+...|+.+.|..+++.... .+ ..++..+...|...|++++
T Consensus 92 ~~~------------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 153 (434)
T 4b4t_Q 92 KTV------------------KVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKD 153 (434)
T ss_dssp HHH------------------HHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHH
T ss_pred HHH------------------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHH
Confidence 111 11223344445567889999999887653 11 2467778888889999999
Q ss_pred hHHHH------------------HHHHHHHHhcccCChhhHHHHHHHHHhccc---------hhhHHHHHHHHHccCCHH
Q 040338 282 PRFFF------------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY---------TCYFVCMVDLLGLSGLLG 334 (385)
Q Consensus 282 a~~~~------------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~~~~~li~~~~~~g~~~ 334 (385)
|..++ ++..++..|...|++++|..++++...... ...+..+...+...|+++
T Consensus 154 A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~ 233 (434)
T 4b4t_Q 154 SLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYK 233 (434)
T ss_dssp HHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHH
T ss_pred HHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHH
Confidence 88887 788888888888999888888887765432 345566667777788888
Q ss_pred HHHHHHHhCC
Q 040338 335 EAKKLIDEMP 344 (385)
Q Consensus 335 ~A~~~~~~m~ 344 (385)
+|.+.|.+..
T Consensus 234 ~A~~~~~~a~ 243 (434)
T 4b4t_Q 234 TAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8877776553
No 151
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.12 E-value=8.8e-06 Score=59.78 Aligned_cols=92 Identities=12% Similarity=-0.126 Sum_probs=80.6
Q ss_pred HHHHHHHhcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-C-CcchHHHHHHHHHhcC
Q 040338 288 FVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-P-TCVIWGALLGACCSHY 363 (385)
Q Consensus 288 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p-~~~~~~~li~~~~~~g 363 (385)
+......+...|++++|...|++..+..+ ...+..+..+|.+.|++++|+..+++..+. | +...|..+..+|...|
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 86 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVK 86 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh
Confidence 45566777888999999999999988877 788889999999999999999999988763 4 5668889999999999
Q ss_pred ChHHHHHHHHHHHhcc
Q 040338 364 NTKLAELVMRNLLQLD 379 (385)
Q Consensus 364 ~~~~a~~~~~~~~~~~ 379 (385)
++++|...+++..+.+
T Consensus 87 ~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 87 EYASALETLDAARTKD 102 (126)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC
Confidence 9999999999999887
No 152
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.08 E-value=0.0037 Score=54.26 Aligned_cols=218 Identities=11% Similarity=-0.015 Sum_probs=152.9
Q ss_pred hHHHHHHHHHHHHcccchhhHHhhhhhHHHHHhhhC--CC-ChhhHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhccCC
Q 040338 10 LPIARKIHAQLISTCLISSIFLQLIDDDYRVFCDIG--PR-YLFTYNTMINGGVRCLCVG-NIKMALHLHGLVKKFYFVS 85 (385)
Q Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~-~~~~a~~~~~~m~~~g~~~ 85 (385)
+..+...+..+++.+- ..++|..+++.+. .| +...|+.--..+.. .+ .+++++++++.+.+... -
T Consensus 53 y~~~~~~~r~~~~~~e-------~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~---l~~~l~eEL~~~~~~L~~nP-K 121 (349)
T 3q7a_A 53 YKDAMDYFRAIAAKEE-------KSERALELTEIIVRMNPAHYTVWQYRFSLLTS---LNKSLEDELRLMNEFAVQNL-K 121 (349)
T ss_dssp HHHHHHHHHHHHHTTC-------CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCCHHHHHHHHHHHHHTTC-C
T ss_pred HHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHhCchhHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHhCC-C
Confidence 3445555555555442 2346777777665 33 45566655444444 56 69999999999998753 3
Q ss_pred CchHHHhHHHHHHhc-C-ChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCch------
Q 040338 86 DESIAKSSIDMHVKC-G-AVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGF------ 157 (385)
Q Consensus 86 ~~~~~~~li~~~~~~-g-~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~------ 157 (385)
+..+|+.--.++.+. + +.++++++++++.+.+ +.|-.+|+--...+.+.|.++
T Consensus 122 ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-------------------pkNy~AW~~R~wvl~~l~~~~~~~~~~ 182 (349)
T 3q7a_A 122 SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-------------------PKNYHTWAYLHWLYSHFSTLGRISEAQ 182 (349)
T ss_dssp CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-------------------TTCHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-------------------CCCHHHHHHHHHHHHHhccccccchhh
Confidence 777888888888776 7 8899999999998877 467778877666666666666
Q ss_pred --HHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccC-------ccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCC--
Q 040338 158 --ETLCTFIELWNHGFGLSSMLYATAFSARASVYD-------LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCN-- 226 (385)
Q Consensus 158 --~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-- 226 (385)
++++.++++.+.. +-|...|+.....+.+.+. ++++++.++..+...+ -|...|+-+-..+.+.|..
T Consensus 183 ~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P-~n~SaW~Ylr~Ll~~~~~~~~ 260 (349)
T 3q7a_A 183 WGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIP-HNVSAWNYLRGFLKHFSLPLV 260 (349)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCCcc
Confidence 8899999888763 2367777776666666665 5677777777777643 4666776666666665543
Q ss_pred ----------------C--------------------CCchhhHHHHHHHHHHcCCChhHHHHHHHhcc
Q 040338 227 ----------------G--------------------IESSIQIGKALVTMYAEGGSTQKADLAFELMS 259 (385)
Q Consensus 227 ----------------~--------------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 259 (385)
. ..++......+.+.|...|+.++|.++++.+.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 261 PILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp GGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 0 14667777888888888888888888888876
No 153
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.07 E-value=2e-05 Score=57.78 Aligned_cols=64 Identities=9% Similarity=-0.038 Sum_probs=31.3
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-CHhhHHHHHHHhcCccCccchhhHHHHHHHh
Q 040338 139 DLVSWNTMISILTRHGFGFETLCTFIELWNHGFGL-SSMLYATAFSARASVYDLEWGPHLHSRVVHM 204 (385)
Q Consensus 139 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 204 (385)
+...|..+..++.+.|++++|+..|++..+. .| +...+..+..++...|++++|...++...+.
T Consensus 37 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 37 DARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKATAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHh
Confidence 3444555555555555555555555555443 22 2344444445555555555555555554443
No 154
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.05 E-value=0.003 Score=54.76 Aligned_cols=231 Identities=7% Similarity=-0.034 Sum_probs=151.0
Q ss_pred cCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcC-ChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchH
Q 040338 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCG-AVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSW 143 (385)
Q Consensus 65 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 143 (385)
.+..++|+++++.+...+.. +..+|+.--..+...| .+++++++++.+...+ +.+..+|
T Consensus 67 ~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-------------------PKny~aW 126 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-------------------LKSYQVW 126 (349)
T ss_dssp TCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-------------------CCCHHHH
T ss_pred CCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-------------------CCcHHHH
Confidence 55667999999999987532 5567888777887788 5999999999988776 4677888
Q ss_pred HHHHHHHHhC-C-CchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCcc--------chhhHHHHHHHhCCCCchHHH
Q 040338 144 NTMISILTRH-G-FGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLE--------WGPHLHSRVVHMEPSLDVFVG 213 (385)
Q Consensus 144 ~~li~~~~~~-~-~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~ 213 (385)
+.--..+.+. + ++++++++++++.+.. +-|...++.-...+.+.+.++ ++++..+.+++..+ -+...
T Consensus 127 ~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SA- 203 (349)
T 3q7a_A 127 HHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSA- 203 (349)
T ss_dssp HHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHH-
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHH-
Confidence 8877777666 6 8999999999998752 236777766555555555666 78888888888754 23334
Q ss_pred HHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCC-------hhHHHHHHHhccc--C-ChhhHHHHHHHHHhcCCCCchH
Q 040338 214 SGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGS-------TQKADLAFELMSR--R-NMISWMVLISAFSQAGVLEKPR 283 (385)
Q Consensus 214 ~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~ 283 (385)
|+.....+.+.++ ++++++.+++..+ | |...|+-+-..+.+.|+....+
T Consensus 204 ---------------------W~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~ 262 (349)
T 3q7a_A 204 ---------------------WGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPI 262 (349)
T ss_dssp ---------------------HHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGG
T ss_pred ---------------------HHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccc
Confidence 4444444444444 5788888877765 3 6778887777777777652211
Q ss_pred HHH-----------HHHHHHHHhcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCC
Q 040338 284 FFF-----------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK 346 (385)
Q Consensus 284 ~~~-----------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 346 (385)
-.. ....+..-|...-+.... ..... +.....+.+.|...|+.++|.++++.+.++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 263 LPAILPYTASKLNPDIETVEAFGFPMPSDPLP-------EDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp HHHHGGGTC--------------CCCCC-CCC-------SSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cccccccccccccccchhHHHHHHHHHhcccc-------cccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 000 111122222111100000 00012 667777888899999999999999988654
No 155
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.05 E-value=0.00011 Score=52.50 Aligned_cols=97 Identities=16% Similarity=-0.001 Sum_probs=68.5
Q ss_pred hhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHH
Q 040338 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLL 129 (385)
Q Consensus 50 ~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~ 129 (385)
..|..+...+.. .|++++|...++...+.. +.+...+..+...+.+.|++++|...+++..+.+
T Consensus 5 ~~~~~~~~~~~~---~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------------ 68 (118)
T 1elw_A 5 NELKEKGNKALS---VGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK------------ 68 (118)
T ss_dssp HHHHHHHHHHHH---TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHH---cccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC------------
Confidence 344555555444 788888888888887753 3356677777778888888888888887765433
Q ss_pred HHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHC
Q 040338 130 IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169 (385)
Q Consensus 130 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 169 (385)
+.+...+..+..++...|++++|...+++..+.
T Consensus 69 -------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 69 -------PDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp -------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred -------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 245667777777888888888888888877664
No 156
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.03 E-value=1.7e-05 Score=58.26 Aligned_cols=93 Identities=9% Similarity=-0.017 Sum_probs=78.3
Q ss_pred HHHHHhcccCChhhHHHHHHHHHhccc--h---hhHHHHHHHHHccCCHHHHHHHHHhCCCC-CC----cchHHHHHHHH
Q 040338 290 SLLSGCSHSGPVTKGKHYFTAMAKFTY--T---CYFVCMVDLLGLSGLLGEAKKLIDEMPSK-PT----CVIWGALLGAC 359 (385)
Q Consensus 290 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p~----~~~~~~li~~~ 359 (385)
.+...+...|++++|...|+.+.+..+ . ..+..+..++.+.|++++|...|++.... |+ ...+..+..+|
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 345667788999999999999988766 3 57788899999999999999999988663 44 45678888999
Q ss_pred HhcCChHHHHHHHHHHHhccccC
Q 040338 360 CSHYNTKLAELVMRNLLQLDVKV 382 (385)
Q Consensus 360 ~~~g~~~~a~~~~~~~~~~~~~~ 382 (385)
...|++++|...++++.+..|..
T Consensus 87 ~~~g~~~~A~~~~~~~~~~~p~~ 109 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQYPGS 109 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTS
T ss_pred HHcCCHHHHHHHHHHHHHHCCCC
Confidence 99999999999999999887754
No 157
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.02 E-value=1e-05 Score=59.35 Aligned_cols=94 Identities=7% Similarity=-0.015 Sum_probs=77.1
Q ss_pred HHHHHHHhcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-C-C-------cchHHHHH
Q 040338 288 FVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-P-T-------CVIWGALL 356 (385)
Q Consensus 288 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p-~-------~~~~~~li 356 (385)
+..+...+...|++++|...+++.....+ ...+..+...+...|++++|...+++.... | + ..+|..+.
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la 86 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHH
Confidence 45666777788889999999998887766 777788888999999999999999887653 2 1 66788888
Q ss_pred HHHHhcCChHHHHHHHHHHHhcccc
Q 040338 357 GACCSHYNTKLAELVMRNLLQLDVK 381 (385)
Q Consensus 357 ~~~~~~g~~~~a~~~~~~~~~~~~~ 381 (385)
..|...|++++|...+++..+..+.
T Consensus 87 ~~~~~~~~~~~A~~~~~~~~~~~~~ 111 (131)
T 1elr_A 87 NSYFKEEKYKDAIHFYNKSLAEHRT 111 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCC
Confidence 9999999999999999998887653
No 158
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.02 E-value=9.9e-06 Score=59.80 Aligned_cols=100 Identities=11% Similarity=-0.018 Sum_probs=80.8
Q ss_pred hHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHH
Q 040338 88 SIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELW 167 (385)
Q Consensus 88 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 167 (385)
..+..+...+.+.|++++|++.|++..+.+ +.+...|+.+..+|.+.|++++|+..+++..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-------------------p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-------------------PSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------------CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 457778889999999999999998876554 4567889999999999999999999999987
Q ss_pred HCC--CCCC----HhhHHHHHHHhcCccCccchhhHHHHHHHhCC
Q 040338 168 NHG--FGLS----SMLYATAFSARASVYDLEWGPHLHSRVVHMEP 206 (385)
Q Consensus 168 ~~g--~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 206 (385)
+.. ..++ ..+|..+-.++...|++++|++.|+..+....
T Consensus 70 ~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 70 EVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 642 1122 23567777888899999999999999887643
No 159
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.02 E-value=2.6e-05 Score=65.46 Aligned_cols=129 Identities=12% Similarity=-0.111 Sum_probs=90.0
Q ss_pred cCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCC--Ccch
Q 040338 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPER--DLVS 142 (385)
Q Consensus 65 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~ 142 (385)
.|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...+.. .| ....
T Consensus 115 ~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-------------------d~~~~~~a 173 (282)
T 4f3v_A 115 QGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-------------------DKFLAGAA 173 (282)
T ss_dssp HTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-------------------CHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-------------------CcccHHHH
Confidence 688888888887776643 333255555567777788888888886442211 11 1236
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC--HhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHH
Q 040338 143 WNTMISILTRHGFGFETLCTFIELWNHGFGLS--SMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGL 216 (385)
Q Consensus 143 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 216 (385)
+..+-.++.+.|++++|+..|++.......|. .........++.+.|+.++|...|+++....+. ...+..|
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~--~~~~~aL 247 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE--PKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC--HHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--HHHHHHH
Confidence 77788899999999999999999875433254 234556667788999999999999999998754 4444333
No 160
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.01 E-value=1.6e-05 Score=59.15 Aligned_cols=95 Identities=5% Similarity=-0.203 Sum_probs=76.4
Q ss_pred HHHHHHHHhcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-C-CcchHHHHHHHHHhc
Q 040338 287 FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-P-TCVIWGALLGACCSH 362 (385)
Q Consensus 287 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p-~~~~~~~li~~~~~~ 362 (385)
.+..+...+...|++++|...|+......+ ...+..+..++...|++++|...+++.... | +...|..+..+|...
T Consensus 11 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 90 (137)
T 3q49_B 11 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEM 90 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 345556666777888888888888877776 777888888899999999999998887652 4 466788888899999
Q ss_pred CChHHHHHHHHHHHhcccc
Q 040338 363 YNTKLAELVMRNLLQLDVK 381 (385)
Q Consensus 363 g~~~~a~~~~~~~~~~~~~ 381 (385)
|++++|...+++..+..|.
T Consensus 91 ~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 91 ESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp TCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHChh
Confidence 9999999999998887765
No 161
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.01 E-value=1.3e-05 Score=64.20 Aligned_cols=64 Identities=8% Similarity=-0.163 Sum_probs=34.5
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHhCCCC--CCcchHHHHHHHHHhcCChHHHHHHHHHHHhcccc
Q 040338 318 CYFVCMVDLLGLSGLLGEAKKLIDEMPSK--PTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381 (385)
Q Consensus 318 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 381 (385)
..+..+..+|.+.|++++|+..++..... .+...|..+..+|...|++++|...+++..+..|.
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 154 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN 154 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC
Confidence 34445555555556666665555555431 23445555555555566666666666555555443
No 162
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.01 E-value=2.8e-05 Score=68.02 Aligned_cols=151 Identities=11% Similarity=-0.001 Sum_probs=113.1
Q ss_pred cCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCC-----
Q 040338 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERD----- 139 (385)
Q Consensus 65 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~----- 139 (385)
.+++++|...++...+.. +-+...+..+...|.+.|++++|...|++..+... .+
T Consensus 126 L~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p-------------------~~~~~~~ 185 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLE-------------------YESSFSN 185 (336)
T ss_dssp EEEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-------------------TCCCCCS
T ss_pred EeecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh-------------------ccccCCh
Confidence 345566666665544432 22567888899999999999999999988765432 22
Q ss_pred ----------cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCc
Q 040338 140 ----------LVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLD 209 (385)
Q Consensus 140 ----------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 209 (385)
..+|..+..+|.+.|++++|+..|++..+.. +.+...|..+..++...|++++|...|+..++..+. +
T Consensus 186 ~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~ 263 (336)
T 1p5q_A 186 EEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-N 263 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-C
Confidence 4789999999999999999999999998862 336788889999999999999999999999987542 2
Q ss_pred hHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHH-HHHHHhcc
Q 040338 210 VFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKA-DLAFELMS 259 (385)
Q Consensus 210 ~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~m~ 259 (385)
..++..+...+.+.|+.++| ..+|..|.
T Consensus 264 ----------------------~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 264 ----------------------KAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23445566666666777777 44555554
No 163
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.00 E-value=4.9e-05 Score=57.91 Aligned_cols=135 Identities=13% Similarity=-0.056 Sum_probs=90.7
Q ss_pred hhHHHHHHHHHHcCCChhHHHHHHHhcccCChhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcccCChhhHHHHHHHH
Q 040338 232 IQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAM 311 (385)
Q Consensus 232 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 311 (385)
..++..+...+...|++++|+..+++..+... ..++ ......++..+...+...|++++|...+++.
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-----------~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 75 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK-----------EFGD--KAAERIAYSNLGNAYIFLGEFETASEYYKKT 75 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----------HHTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-----------HhCC--chHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34667888888999999999999988764100 0000 0000013344444455555556666655554
Q ss_pred Hhccc--------hhhHHHHHHHHHccCCHHHHHHHHHhCCCC----C----CcchHHHHHHHHHhcCChHHHHHHHHHH
Q 040338 312 AKFTY--------TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK----P----TCVIWGALLGACCSHYNTKLAELVMRNL 375 (385)
Q Consensus 312 ~~~~~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----p----~~~~~~~li~~~~~~g~~~~a~~~~~~~ 375 (385)
..... ...+..+...+...|++++|.+.+++.... . ...++..+...|...|++++|.+.+++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 76 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 44322 556777888899999999999998877541 1 1346778889999999999999999998
Q ss_pred Hhcc
Q 040338 376 LQLD 379 (385)
Q Consensus 376 ~~~~ 379 (385)
.+..
T Consensus 156 ~~~~ 159 (164)
T 3ro3_A 156 LEIS 159 (164)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
No 164
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.00 E-value=5.3e-05 Score=64.40 Aligned_cols=98 Identities=8% Similarity=-0.158 Sum_probs=81.2
Q ss_pred hhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHH
Q 040338 49 LFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRL 128 (385)
Q Consensus 49 ~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a 128 (385)
...+..+-..+.. .|++++|...++...+.. +.+...|..+..+|.+.|++++|...+++..+.+
T Consensus 4 a~~~~~~g~~~~~---~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----------- 68 (281)
T 2c2l_A 4 AQELKEQGNRLFV---GRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD----------- 68 (281)
T ss_dssp HHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-----------
T ss_pred HHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----------
Confidence 3455555566555 899999999999999874 3377888999999999999999999999987765
Q ss_pred HHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHC
Q 040338 129 LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169 (385)
Q Consensus 129 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 169 (385)
+.+...+..+..++...|++++|...|++..+.
T Consensus 69 --------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 69 --------GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp --------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456778899999999999999999999988764
No 165
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.00 E-value=2.3e-05 Score=59.82 Aligned_cols=92 Identities=9% Similarity=-0.110 Sum_probs=69.6
Q ss_pred HHHHHHHHhcccCChhhHHHHHHHHHhccc--------hhhHHHHHHHHHccCCHHHHHHHHHhCCCC----CC----cc
Q 040338 287 FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--------TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK----PT----CV 350 (385)
Q Consensus 287 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----p~----~~ 350 (385)
++..+...+...|++++|...+++..+... ...+..+...+...|++++|.+.+++.... ++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 455666666777777777777777665433 357778888899999999999999876542 12 44
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 040338 351 IWGALLGACCSHYNTKLAELVMRNLLQL 378 (385)
Q Consensus 351 ~~~~li~~~~~~g~~~~a~~~~~~~~~~ 378 (385)
.+..+...+...|++++|...+++..+.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 118 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAI 118 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 6778888899999999999999988754
No 166
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.98 E-value=0.0001 Score=54.65 Aligned_cols=101 Identities=8% Similarity=-0.161 Sum_probs=80.4
Q ss_pred CCChhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccch
Q 040338 46 PRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGI 125 (385)
Q Consensus 46 ~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 125 (385)
..+...|..+-..+.. .|++++|...|+...+.. +.+...|..+..+|...|++++|...|++..+.+
T Consensus 6 ~~~~~~~~~~g~~~~~---~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-------- 73 (137)
T 3q49_B 6 SPSAQELKEQGNRLFV---GRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-------- 73 (137)
T ss_dssp CCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------
T ss_pred cccHHHHHHHHHHHHH---hCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------
Confidence 3455666667777656 899999999999988874 3367788888899999999999999998876544
Q ss_pred HHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHC
Q 040338 126 IRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169 (385)
Q Consensus 126 ~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 169 (385)
+.+...|..+..++...|++++|...|++..+.
T Consensus 74 -----------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 74 -----------GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp -----------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----------chhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 356778888889999999999999999888764
No 167
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.98 E-value=4.8e-05 Score=58.72 Aligned_cols=100 Identities=10% Similarity=-0.055 Sum_probs=81.5
Q ss_pred CchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHH
Q 040338 86 DESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIE 165 (385)
Q Consensus 86 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 165 (385)
+...+..+...+.+.|++++|+..|++..+.+ +.+...|..+..+|.+.|++++|+..|++
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 70 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-------------------PANPIYLSNRAAAYSASGQHEKAAEDAEL 70 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------------CcCHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 45667778888888999999999988876554 35677888888999999999999999999
Q ss_pred HHHCCCCC-CHhhHHHHHHHhcCccCccchhhHHHHHHHhCC
Q 040338 166 LWNHGFGL-SSMLYATAFSARASVYDLEWGPHLHSRVVHMEP 206 (385)
Q Consensus 166 m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 206 (385)
..+. .| +...|..+..++...|++++|...|+..++...
T Consensus 71 al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 110 (164)
T 3sz7_A 71 ATVV--DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEG 110 (164)
T ss_dssp HHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHS
T ss_pred HHHh--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 8875 34 577788888888999999999999998888654
No 168
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.97 E-value=7.9e-06 Score=59.26 Aligned_cols=86 Identities=6% Similarity=-0.018 Sum_probs=70.3
Q ss_pred ccCChhhHHHHHHHHHhcc---c--hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-C-CcchHHHHHHHHHhcCChHHHH
Q 040338 297 HSGPVTKGKHYFTAMAKFT---Y--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-P-TCVIWGALLGACCSHYNTKLAE 369 (385)
Q Consensus 297 ~~~~~~~a~~~~~~~~~~~---~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p-~~~~~~~li~~~~~~g~~~~a~ 369 (385)
..|++++|+..|++..+.+ + ...+..+...|.+.|++++|++.|++..+. | +...+..+..+|...|++++|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 3578889999999999883 4 788888999999999999999999988763 4 4667888999999999999999
Q ss_pred HHHHHHHhccccC
Q 040338 370 LVMRNLLQLDVKV 382 (385)
Q Consensus 370 ~~~~~~~~~~~~~ 382 (385)
..+++.++..|.+
T Consensus 82 ~~~~~al~~~p~~ 94 (117)
T 3k9i_A 82 ELLLKIIAETSDD 94 (117)
T ss_dssp HHHHHHHHHHCCC
T ss_pred HHHHHHHHhCCCc
Confidence 9999998887665
No 169
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.96 E-value=5.3e-05 Score=55.41 Aligned_cols=112 Identities=5% Similarity=0.009 Sum_probs=85.5
Q ss_pred hhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHH
Q 040338 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLL 129 (385)
Q Consensus 50 ~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~ 129 (385)
..|..+...+.. .|++++|...++...+.. +.+...+..+...|...|++++|...+++..+.+.
T Consensus 5 ~~~~~l~~~~~~---~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~----------- 69 (131)
T 1elr_A 5 LKEKELGNDAYK---KKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR----------- 69 (131)
T ss_dssp HHHHHHHHHHHH---TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHH---hcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc-----------
Confidence 345666666555 899999999999999875 44678889999999999999999999988754332
Q ss_pred HHhcCCCCCC----cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 040338 130 IMFQKMPERD----LVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFS 183 (385)
Q Consensus 130 ~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 183 (385)
.. .++ ..+|..+...+...|++++|...|++..+. .|+......+..
T Consensus 70 ----~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 120 (131)
T 1elr_A 70 ----EN-REDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQ 120 (131)
T ss_dssp ----HS-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHH
T ss_pred ----cc-chhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence 00 122 567888889999999999999999999885 456555444443
No 170
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.91 E-value=2.4e-05 Score=68.55 Aligned_cols=144 Identities=7% Similarity=-0.074 Sum_probs=83.0
Q ss_pred hHHHHHHHHHHcCCChhHHHHHHHhccc--CChhhHHHHHHHHHhcCCCCchHHHH---HHHHHHHHhcccCChhhHHHH
Q 040338 233 QIGKALVTMYAEGGSTQKADLAFELMSR--RNMISWMVLISAFSQAGVLEKPRFFF---FFVSLLSGCSHSGPVTKGKHY 307 (385)
Q Consensus 233 ~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~a~~~~---~~~~l~~~~~~~~~~~~a~~~ 307 (385)
..+..+...+.+.|++++|+..|++..+ |+... +...|+.+++...+ +|..+..+|.+.|++++|...
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~ 252 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGH 252 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4456777888899999999999998765 32221 11222223333333 788888999999999999999
Q ss_pred HHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-CC-cchHHHHHHH-HHhcCChHHHHHHHHHHHhccccC
Q 040338 308 FTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-PT-CVIWGALLGA-CCSHYNTKLAELVMRNLLQLDVKV 382 (385)
Q Consensus 308 ~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p~-~~~~~~li~~-~~~~g~~~~a~~~~~~~~~~~~~~ 382 (385)
+++..+..+ ...+..+..+|...|++++|.+.|++..+. |+ ...+..+... ....+..+++...|++|.+..|.+
T Consensus 253 ~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~ 332 (338)
T 2if4_A 253 CNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEG 332 (338)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------------------
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Confidence 999988877 788888999999999999999999999874 53 4455555554 334567788999999999888765
Q ss_pred C
Q 040338 383 F 383 (385)
Q Consensus 383 ~ 383 (385)
+
T Consensus 333 ~ 333 (338)
T 2if4_A 333 G 333 (338)
T ss_dssp -
T ss_pred C
Confidence 4
No 171
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.90 E-value=9.8e-05 Score=61.99 Aligned_cols=172 Identities=15% Similarity=0.015 Sum_probs=108.7
Q ss_pred CccCccchhhHHHHHHHhCCCCchHHHHHH-----------HHHHHhcCCCC-------CCc------------------
Q 040338 187 SVYDLEWGPHLHSRVVHMEPSLDVFVGSGL-----------IDMYLKCGCNG-------IES------------------ 230 (385)
Q Consensus 187 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-----------i~~~~~~g~~~-------~~~------------------ 230 (385)
..++...|.+.|.++....+. ....|..+ ...+.....+. ..|
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 578889999999999887642 33344433 22222222111 111
Q ss_pred ----hhhHHHHHHHHHHcCCChhHHHHHHHhccc--CChhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcccCChhhH
Q 040338 231 ----SIQIGKALVTMYAEGGSTQKADLAFELMSR--RNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKG 304 (385)
Q Consensus 231 ----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~l~~~~~~~~~~~~a 304 (385)
-...+-.....+...|++++|.++|+.+.. |+......+. ..+.+.+++++|
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a----------------------~l~~~~~r~~dA 154 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKA----------------------VVYGAAERWTDV 154 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHH----------------------HHHHHTTCHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHH----------------------HHHHHcCCHHHH
Confidence 123334456667777788888888777764 2111222222 244556667777
Q ss_pred HHHHHHHHhccc----hhhHHHHHHHHHccCCHHHHHHHHHhCCCCC---C--cchHHHHHHHHHhcCChHHHHHHHHHH
Q 040338 305 KHYFTAMAKFTY----TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKP---T--CVIWGALLGACCSHYNTKLAELVMRNL 375 (385)
Q Consensus 305 ~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p---~--~~~~~~li~~~~~~g~~~~a~~~~~~~ 375 (385)
+..|+....... ...+..+..++.+.|++++|++.|++....| . .........++.+.|+.++|..+|+++
T Consensus 155 ~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a 234 (282)
T 4f3v_A 155 IDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWL 234 (282)
T ss_dssp HHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777765544332 2356678888999999999999999886433 2 235566777888999999999999999
Q ss_pred Hhcccc
Q 040338 376 LQLDVK 381 (385)
Q Consensus 376 ~~~~~~ 381 (385)
...+|.
T Consensus 235 ~a~~P~ 240 (282)
T 4f3v_A 235 QTTHPE 240 (282)
T ss_dssp HHHSCC
T ss_pred HhcCCc
Confidence 888775
No 172
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.90 E-value=5e-05 Score=58.48 Aligned_cols=96 Identities=11% Similarity=-0.067 Sum_probs=75.3
Q ss_pred HHHHHHHhcccCChhhHHHHHHHHHhc------------------cc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-
Q 040338 288 FVSLLSGCSHSGPVTKGKHYFTAMAKF------------------TY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK- 346 (385)
Q Consensus 288 ~~~l~~~~~~~~~~~~a~~~~~~~~~~------------------~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 346 (385)
+......+.+.|++++|...|.+.... .+ ...+..+..+|.+.|++++|+..++.....
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 93 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE 93 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 444455556666666666666666554 33 677888899999999999999999888762
Q ss_pred C-CcchHHHHHHHHHhcCChHHHHHHHHHHHhccccCC
Q 040338 347 P-TCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVF 383 (385)
Q Consensus 347 p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 383 (385)
| +...|..+..+|...|++++|...+++.++.+|.+.
T Consensus 94 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 94 ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 4 567899999999999999999999999999888753
No 173
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.86 E-value=9.4e-06 Score=58.87 Aligned_cols=86 Identities=8% Similarity=-0.134 Sum_probs=61.1
Q ss_pred cCChHHHHHHHHHHHHhc--cCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcch
Q 040338 65 VGNIKMALHLHGLVKKFY--FVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVS 142 (385)
Q Consensus 65 ~~~~~~a~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 142 (385)
.|++++|+..|++..+.+ -+.+...+..+..+|.+.|++++|+..|++..+.+ +.+..+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-------------------p~~~~~ 63 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-------------------PNHQAL 63 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------TTCHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------------CCchHH
Confidence 577888888888887754 23345677778888888888888888887776544 345667
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHC
Q 040338 143 WNTMISILTRHGFGFETLCTFIELWNH 169 (385)
Q Consensus 143 ~~~li~~~~~~~~~~~a~~~~~~m~~~ 169 (385)
+..+..++.+.|++++|+..|++..+.
T Consensus 64 ~~~l~~~~~~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 64 RVFYAMVLYNLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 777888888888888888888877664
No 174
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.85 E-value=0.00035 Score=52.27 Aligned_cols=98 Identities=12% Similarity=0.027 Sum_probs=66.0
Q ss_pred ChhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCC----chHHHhHHHHHHhcCChhHHHHHHHhccCCCcccccc
Q 040338 48 YLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSD----ESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKF 123 (385)
Q Consensus 48 ~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 123 (385)
+...+..+...+.. .|++++|...|+...+. .|+ ...+..+..+|...|++++|...+++..+.+
T Consensus 27 ~~~~~~~~a~~~~~---~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------ 95 (148)
T 2dba_A 27 SVEQLRKEGNELFK---CGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD------ 95 (148)
T ss_dssp CHHHHHHHHHHHHT---TTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC------
Confidence 34445555555444 78888888888877764 344 5667777777777788888877776654433
Q ss_pred chHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHC
Q 040338 124 GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169 (385)
Q Consensus 124 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 169 (385)
+.+...|..+..++...|++++|...|++..+.
T Consensus 96 -------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 96 -------------GGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp -------------SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -------------ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 245566777777777777788887777777664
No 175
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.85 E-value=0.0002 Score=53.64 Aligned_cols=100 Identities=14% Similarity=-0.005 Sum_probs=85.5
Q ss_pred CCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCC----cchHHHHHHHHHhCCCchHHH
Q 040338 85 SDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERD----LVSWNTMISILTRHGFGFETL 160 (385)
Q Consensus 85 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~ 160 (385)
.+...+..+...+.+.|++++|.+.|++..+.+ |+ ...|..+..+|...|++++|+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--------------------~~~~~~~~~~~~~a~~~~~~~~~~~A~ 85 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--------------------ATPQDQAVLHRNRAACHLKLEDYDKAE 85 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--------------------CCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--------------------ccchHHHHHHHHHHHHHHHHccHHHHH
Confidence 356778888899999999999999999887654 33 677888899999999999999
Q ss_pred HHHHHHHHCCCCC-CHhhHHHHHHHhcCccCccchhhHHHHHHHhCC
Q 040338 161 CTFIELWNHGFGL-SSMLYATAFSARASVYDLEWGPHLHSRVVHMEP 206 (385)
Q Consensus 161 ~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 206 (385)
..+++..+. .| +...+..+..++...|++++|...++...+..+
T Consensus 86 ~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p 130 (148)
T 2dba_A 86 TEASKAIEK--DGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEP 130 (148)
T ss_dssp HHHHHHHHH--TSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHhh--CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 999998875 34 567788888899999999999999999998753
No 176
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.85 E-value=0.00014 Score=57.98 Aligned_cols=147 Identities=9% Similarity=-0.059 Sum_probs=98.4
Q ss_pred hhhhHHHHHhhhCCC---ChhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCc----------------hHHHhH
Q 040338 33 LIDDDYRVFCDIGPR---YLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDE----------------SIAKSS 93 (385)
Q Consensus 33 ~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~----------------~~~~~l 93 (385)
+++.|...|+.-... ....+..+-..+.. .|++++|...|++..+.... +. .+|..+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l 94 (198)
T 2fbn_A 19 FQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFK---KNEINEAIVKYKEALDFFIH-TEEWDDQILLDKKKNIEISCNLNL 94 (198)
T ss_dssp ---CCCSGGGCCHHHHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTTTT-CTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred hccccCchhhCCHHHHHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHhc-ccccchhhHHHHHHHHHHHHHHHH
Confidence 667777776632211 23344444455444 89999999999999885322 22 678888
Q ss_pred HHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC
Q 040338 94 IDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGL 173 (385)
Q Consensus 94 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 173 (385)
..+|.+.|++++|+..+++..+.+ +.+...|..+..+|...|++++|...|++..+. .|
T Consensus 95 a~~~~~~~~~~~A~~~~~~al~~~-------------------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p 153 (198)
T 2fbn_A 95 ATCYNKNKDYPKAIDHASKVLKID-------------------KNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NP 153 (198)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--ST
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhC-------------------cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CC
Confidence 899999999999999998876544 456778888999999999999999999998875 44
Q ss_pred -CHhhHHHHHHHhcCccCccchh-hHHHHHHHh
Q 040338 174 -SSMLYATAFSARASVYDLEWGP-HLHSRVVHM 204 (385)
Q Consensus 174 -~~~t~~~ll~~~~~~~~~~~a~-~~~~~~~~~ 204 (385)
+...+..+..++...++..++. ..+..+...
T Consensus 154 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 154 NNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp TCHHHHHHHHHHHHHHHHHHC------------
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5566677777777777766665 455555443
No 177
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.81 E-value=0.00011 Score=62.43 Aligned_cols=95 Identities=5% Similarity=-0.195 Sum_probs=79.7
Q ss_pred HHHHHHHhcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-C-CcchHHHHHHHHHhcC
Q 040338 288 FVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-P-TCVIWGALLGACCSHY 363 (385)
Q Consensus 288 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p-~~~~~~~li~~~~~~g 363 (385)
+..+...+...|++++|...+++..+..+ ...+..+..+|.+.|++++|.+.+++..+. | +...+..+..+|...|
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 86 (281)
T 2c2l_A 7 LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEME 86 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 44556677788889999999999888777 778888899999999999999999988774 4 5667888899999999
Q ss_pred ChHHHHHHHHHHHhccccC
Q 040338 364 NTKLAELVMRNLLQLDVKV 382 (385)
Q Consensus 364 ~~~~a~~~~~~~~~~~~~~ 382 (385)
++++|...+++..+.+|..
T Consensus 87 ~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 87 SYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp CHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhCccc
Confidence 9999999999998887754
No 178
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.78 E-value=8.5e-05 Score=68.31 Aligned_cols=114 Identities=7% Similarity=-0.076 Sum_probs=89.8
Q ss_pred ccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchH
Q 040338 64 CVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSW 143 (385)
Q Consensus 64 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 143 (385)
..|++++|.+.+++..+.. +.+..+|..+..+|.+.|++++|++.+++..+.+ +.+..+|
T Consensus 18 ~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-------------------p~~~~~~ 77 (477)
T 1wao_1 18 KAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-------------------KKYIKGY 77 (477)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-------------------TTCHHHH
T ss_pred HhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------------------CCCHHHH
Confidence 3799999999999999874 3367889999999999999999999998887655 4567789
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHCCCCC-CHhhHHHHHHH--hcCccCccchhhHHH
Q 040338 144 NTMISILTRHGFGFETLCTFIELWNHGFGL-SSMLYATAFSA--RASVYDLEWGPHLHS 199 (385)
Q Consensus 144 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~--~~~~~~~~~a~~~~~ 199 (385)
..+..+|.+.|++++|++.|++..+. .| +...+..+..+ +.+.|++++|++.++
T Consensus 78 ~~lg~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 78 YRRAASNMALGKFRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999875 34 33444445444 788899999999988
No 179
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.77 E-value=0.00013 Score=53.13 Aligned_cols=95 Identities=11% Similarity=-0.105 Sum_probs=76.7
Q ss_pred HHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHH
Q 040338 52 YNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIM 131 (385)
Q Consensus 52 ~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~ 131 (385)
+..+-..+.. .|++++|...++...+.. +.+...|..+..++.+.|++++|+..|++..+.+
T Consensus 20 ~~~~g~~~~~---~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-------------- 81 (121)
T 1hxi_A 20 PMEEGLSMLK---LANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-------------- 81 (121)
T ss_dssp HHHHHHHHHH---TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHH---cCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------
Confidence 3334444444 899999999999999874 3477888889999999999999999998876655
Q ss_pred hcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHC
Q 040338 132 FQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169 (385)
Q Consensus 132 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 169 (385)
+.+...+..+..++.+.|++++|+..|++..+.
T Consensus 82 -----P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 82 -----PKDIAVHAALAVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp -----TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred -----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 356778888999999999999999999998763
No 180
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.70 E-value=0.0042 Score=53.58 Aligned_cols=255 Identities=7% Similarity=-0.066 Sum_probs=149.5
Q ss_pred hhhHHHHHHHHHhhhccCChH-HHHHHHHHHHHhccCCCchHHHhHHHHHHhcCC----------hhHHHHHHHhccCCC
Q 040338 49 LFTYNTMINGGVRCLCVGNIK-MALHLHGLVKKFYFVSDESIAKSSIDMHVKCGA----------VDYAESAFLRMLNPS 117 (385)
Q Consensus 49 ~~~~~~li~~~~~~~~~~~~~-~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~~ 117 (385)
...|..+...+......|.+. +|+++++.+...+.. +..+|+.--..+...+. +++++.+++.+...+
T Consensus 26 i~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~ 104 (331)
T 3dss_A 26 LKLYQSATQAVFQKRQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN 104 (331)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC
Confidence 455666666555444466655 899999999976422 34455554444433332 567777777776555
Q ss_pred ccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCC--chHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccC-ccch
Q 040338 118 LFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGF--GFETLCTFIELWNHGFGLSSMLYATAFSARASVYD-LEWG 194 (385)
Q Consensus 118 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~a 194 (385)
+.+..+|+.-...+.+.++ +++++.+++++.+.. +-|.+.|+.-...+...|. ++++
T Consensus 105 -------------------PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~ee 164 (331)
T 3dss_A 105 -------------------PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEE 164 (331)
T ss_dssp -------------------TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHH
T ss_pred -------------------CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHH
Confidence 4677888887777777774 789999999999863 2367777665555666676 4889
Q ss_pred hhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc--C-ChhhHHHHHH
Q 040338 195 PHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR--R-NMISWMVLIS 271 (385)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~ 271 (385)
++.+..+++..+ -+...|+-....+.+.+.....++ ..-...+.++++++.++.... | |..+|+-+--
T Consensus 165 l~~~~~~I~~~p-~N~SAW~~R~~ll~~l~~~~~~~~--------~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ 235 (331)
T 3dss_A 165 LAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGP--------QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRW 235 (331)
T ss_dssp HHHHHHHHHHCS-CCHHHHHHHHHHHHHHSCCC--------------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCC-CCHHHHHHHHHHHHHhhhcccccc--------ccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 999999998764 455566555444444321100000 000001346778888877764 4 5666665444
Q ss_pred HHHhc-CCCCchHHHHHHHHHHHHhcccCChhhHHHHHHHHHhccchhhHH--H---HHHHHHccCCHHHHHHHHHhCCC
Q 040338 272 AFSQA-GVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFV--C---MVDLLGLSGLLGEAKKLIDEMPS 345 (385)
Q Consensus 272 ~~~~~-g~~~~a~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~---li~~~~~~g~~~~A~~~~~~m~~ 345 (385)
.+.+. |..+-. -...+.++++++.++++.+..+...+. + +.......|..+++...+.++.+
T Consensus 236 ll~~~~~~~~~~------------~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 236 LLGAGSGRCELS------------VEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHSSSCGGGCC------------HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred HHHhccCccccc------------hHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 44333 211000 011234567777777777766611221 1 22222345667777777777764
No 181
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.67 E-value=8.8e-05 Score=68.00 Aligned_cols=123 Identities=6% Similarity=-0.068 Sum_probs=83.5
Q ss_pred HHHHcCCChhHHHHHHHhccc-------C---C-hhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcccCChhhHHHHH
Q 040338 240 TMYAEGGSTQKADLAFELMSR-------R---N-MISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYF 308 (385)
Q Consensus 240 ~~~~~~g~~~~A~~~~~~m~~-------~---~-~~~~~~li~~~~~~g~~~~a~~~~~~~~l~~~~~~~~~~~~a~~~~ 308 (385)
..+...|++++|+.++++..+ + + ..+++.|..+|...|++++|+.++ +++..++
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~---------------~~aL~i~ 381 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYA---------------RRMVDGY 381 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHH---------------HHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHH---------------HHHHHHH
Confidence 345678999999999877653 1 1 246666777777777777776653 4444444
Q ss_pred HHHHhccc---hhhHHHHHHHHHccCCHHHHHHHHHhCCCC---------CCc-chHHHHHHHHHhcCChHHHHHHHHHH
Q 040338 309 TAMAKFTY---TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK---------PTC-VIWGALLGACCSHYNTKLAELVMRNL 375 (385)
Q Consensus 309 ~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------p~~-~~~~~li~~~~~~g~~~~a~~~~~~~ 375 (385)
++..-... ..+++.|...|..+|++++|+.++++..+- |++ .+.+.+-.++...+.+++|..+++++
T Consensus 382 ~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~ 461 (490)
T 3n71_A 382 MKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKM 461 (490)
T ss_dssp HHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44333333 667777888888888888888888776541 322 24556667777888888888888887
Q ss_pred Hh
Q 040338 376 LQ 377 (385)
Q Consensus 376 ~~ 377 (385)
.+
T Consensus 462 ~~ 463 (490)
T 3n71_A 462 RE 463 (490)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 182
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.66 E-value=0.00025 Score=51.85 Aligned_cols=96 Identities=13% Similarity=-0.098 Sum_probs=76.4
Q ss_pred HHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCc---chHHHHHHHHHhCCCchHHHHHHHHH
Q 040338 90 AKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDL---VSWNTMISILTRHGFGFETLCTFIEL 166 (385)
Q Consensus 90 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m 166 (385)
+..+...+.+.|++++|.+.|++..+.++ .+. ..+..+..++.+.|++++|...|++.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-------------------~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~ 65 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYP-------------------NGVYTPNALYWLGESYYATRNFQLAEAQFRDL 65 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCS-------------------SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCC-------------------CCcccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 34456777889999999999988765432 223 47777888999999999999999999
Q ss_pred HHCCCCCC----HhhHHHHHHHhcCccCccchhhHHHHHHHhCC
Q 040338 167 WNHGFGLS----SMLYATAFSARASVYDLEWGPHLHSRVVHMEP 206 (385)
Q Consensus 167 ~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 206 (385)
.+.. |+ ...+..+..++...|++++|...++.+.+..+
T Consensus 66 ~~~~--p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 107 (129)
T 2xev_A 66 VSRY--PTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYP 107 (129)
T ss_dssp HHHC--TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHC--CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 8753 43 55677788889999999999999999998753
No 183
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.65 E-value=7.1e-05 Score=68.43 Aligned_cols=146 Identities=5% Similarity=-0.173 Sum_probs=108.3
Q ss_pred hhhhHHHHHhhhCC--C-ChhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCC--------------chHHHhHHH
Q 040338 33 LIDDDYRVFCDIGP--R-YLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSD--------------ESIAKSSID 95 (385)
Q Consensus 33 ~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~--------------~~~~~~li~ 95 (385)
++++|...|+.... | ....|..+-..+.. .|++++|...|++..+...... ..+|..+..
T Consensus 249 ~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~---~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEKLEQAAIVKEKGTVYFK---GGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEECCCCGGGSCHHHHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhcCHHHHHHHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 56666666654331 1 23456666666555 8999999999999998643221 578899999
Q ss_pred HHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-C
Q 040338 96 MHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGL-S 174 (385)
Q Consensus 96 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~ 174 (385)
+|.+.|++++|+..|++..+.+ +.+...|..+..+|...|++++|+..|++..+. .| +
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~-------------------p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~ 384 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLD-------------------SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQN 384 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C---
T ss_pred HHHHhcCHHHHHHHHHHHHhcC-------------------CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCC
Confidence 9999999999999998887655 357788999999999999999999999999874 55 4
Q ss_pred HhhHHHHHHHhcCccCccchh-hHHHHHH
Q 040338 175 SMLYATAFSARASVYDLEWGP-HLHSRVV 202 (385)
Q Consensus 175 ~~t~~~ll~~~~~~~~~~~a~-~~~~~~~ 202 (385)
...+..+..++.+.++.+++. ..+..|.
T Consensus 385 ~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 385 KAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777888888888877665 3444443
No 184
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.64 E-value=6.2e-05 Score=69.01 Aligned_cols=81 Identities=6% Similarity=-0.093 Sum_probs=62.9
Q ss_pred ccCChhhHHHHHHHHHhccc----------hhhHHHHHHHHHccCCHHHHHHHHHhCCC---------CCC-cchHHHHH
Q 040338 297 HSGPVTKGKHYFTAMAKFTY----------TCYFVCMVDLLGLSGLLGEAKKLIDEMPS---------KPT-CVIWGALL 356 (385)
Q Consensus 297 ~~~~~~~a~~~~~~~~~~~~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~---------~p~-~~~~~~li 356 (385)
..|++++|..++++..+... ..+++.|...|...|++++|..++++... .|+ ..+++.|.
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 400 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG 400 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 44556666666655544221 77888999999999999999999988765 133 34799999
Q ss_pred HHHHhcCChHHHHHHHHHHHh
Q 040338 357 GACCSHYNTKLAELVMRNLLQ 377 (385)
Q Consensus 357 ~~~~~~g~~~~a~~~~~~~~~ 377 (385)
..|...|++++|..++++.++
T Consensus 401 ~~~~~~G~~~eA~~~~~~Al~ 421 (490)
T 3n71_A 401 LTNWHAGHIEVGHGMICKAYA 421 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999999865
No 185
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.59 E-value=0.0015 Score=60.10 Aligned_cols=281 Identities=9% Similarity=-0.059 Sum_probs=148.2
Q ss_pred CChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCC-hhHHHHHHHhccCC-CccccccchHHHHHHhcCCCCCCcchH
Q 040338 66 GNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGA-VDYAESAFLRMLNP-SLFCWKFGIIRLLIMFQKMPERDLVSW 143 (385)
Q Consensus 66 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~ 143 (385)
|+++.+..+|+..+.. .|+...|...+....+.+. .+....+|+..... |. ...+...|
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~-----------------d~~s~~iW 88 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFEN-----------------YWDSYGLY 88 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTT-----------------CTTCHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCC-----------------CcccHHHH
Confidence 7899999999999884 5799999999988888763 34455666554321 11 12355666
Q ss_pred HHHHHHHH----hCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcC---c--------------cCccchhhHHHHHH
Q 040338 144 NTMISILT----RHGFGFETLCTFIELWNHGFGLSSMLYATAFSARAS---V--------------YDLEWGPHLHSRVV 202 (385)
Q Consensus 144 ~~li~~~~----~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~---~--------------~~~~~a~~~~~~~~ 202 (385)
...+..+. ..++.+.+.++|++.... ++.. +..+...|.. . +.+..|..+++.+.
T Consensus 89 ~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~~--~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~ 164 (493)
T 2uy1_A 89 KEYIEEEGKIEDEQTRIEKIRNGYMRALQT--PMGS--LSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQ 164 (493)
T ss_dssp HHHHHHTSSCSSHHHHHHHHHHHHHHHHTS--CCTT--HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHHhC--hhhh--HHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHH
Confidence 66665543 234566777777777752 2211 0111111110 0 11111222222211
Q ss_pred HhCCCCchHHHHHHHHH--------------------HHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc-C
Q 040338 203 HMEPSLDVFVGSGLIDM--------------------YLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR-R 261 (385)
Q Consensus 203 ~~~~~~~~~~~~~li~~--------------------~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~ 261 (385)
..-...+...|...+.. |-+.= ...+.+...|-..+.-+.+.|+.+.|..+|++... |
T Consensus 165 ~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al-~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~P 243 (493)
T 2uy1_A 165 PLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYIL-DSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMS 243 (493)
T ss_dssp HHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHH-HHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 10000011112111111 11100 00233456777777788889999999999986654 3
Q ss_pred Chh-hHHHHHHHHHhcCCCCch---------------------HHH-HHHHHHHHHhcccCChhhHHHHHHHHHhccc--
Q 040338 262 NMI-SWMVLISAFSQAGVLEKP---------------------RFF-FFFVSLLSGCSHSGPVTKGKHYFTAMAKFTY-- 316 (385)
Q Consensus 262 ~~~-~~~~li~~~~~~g~~~~a---------------------~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-- 316 (385)
+.. .+. .|....+.++. ... ..|...+....+.++.+.|..+|++. +...
T Consensus 244 ~~~~l~~----~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~ 318 (493)
T 2uy1_A 244 DGMFLSL----YYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVG 318 (493)
T ss_dssp CSSHHHH----HHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCC
T ss_pred CcHHHHH----HHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCC
Confidence 221 111 12211111110 000 04555555555677889999999988 3222
Q ss_pred hhhHHHHHHHHHccC-CHHHHHHHHHhCCCC-CC-cchHHHHHHHHHhcCChHHHHHHHHHH
Q 040338 317 TCYFVCMVDLLGLSG-LLGEAKKLIDEMPSK-PT-CVIWGALLGACCSHYNTKLAELVMRNL 375 (385)
Q Consensus 317 ~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~-p~-~~~~~~li~~~~~~g~~~~a~~~~~~~ 375 (385)
...|......-...+ +.+.|..+|+..... |+ ...|...++...+.|+.+.|..+|+.+
T Consensus 319 ~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 319 PHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 233332222222233 688999999877653 33 334566677777888999998888875
No 186
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.56 E-value=0.0003 Score=64.65 Aligned_cols=117 Identities=11% Similarity=-0.073 Sum_probs=85.3
Q ss_pred cccCCChHHHHHHHHHHHHcccchhhHHhhhhhHHHHHhhhCCCChhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhcc
Q 040338 4 CGSLKSLPIARKIHAQLISTCLISSIFLQLIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYF 83 (385)
Q Consensus 4 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~ 83 (385)
+.+.|++++|...++++++. .+.+...|..+-..+.. .|++++|.+.+++..+..
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~---------------------~p~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~l~- 70 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIEL---------------------NPSNAIYYGNRSLAYLR---TECYGYALGDATRAIELD- 70 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHH---------------------CTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHSC-
T ss_pred HHHhCCHHHHHHHHHHHHHh---------------------CCccHHHHHHHHHHHHH---hcCHHHHHHHHHHHHHhC-
Confidence 34556666666666666552 24457788888888777 899999999999999874
Q ss_pred CCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHH--HHhCCCchHHHH
Q 040338 84 VSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISI--LTRHGFGFETLC 161 (385)
Q Consensus 84 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~ 161 (385)
+.+...|..+..+|.+.|++++|.+.|++..+.+ +.+...+..+..+ +.+.|++++|++
T Consensus 71 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-------------------p~~~~~~~~l~~~~~~~~~g~~~~A~~ 131 (477)
T 1wao_1 71 KKYIKGYYRRAASNMALGKFRAALRDYETVVKVK-------------------PHDKDAKMKYQECNKIVKQKAFERAIA 131 (477)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-------------------TTCTTHHHHHHHHHHHHHHHHHCCC--
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------------CCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3467889999999999999999999998876544 2344566666555 888899999999
Q ss_pred HHH
Q 040338 162 TFI 164 (385)
Q Consensus 162 ~~~ 164 (385)
.++
T Consensus 132 ~~~ 134 (477)
T 1wao_1 132 GDE 134 (477)
T ss_dssp ---
T ss_pred ccc
Confidence 988
No 187
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.54 E-value=0.00041 Score=63.38 Aligned_cols=138 Identities=12% Similarity=0.001 Sum_probs=85.8
Q ss_pred hhHHHHHHHHHHcCCChhHHHHHHHhccc--CChhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcccCChhhHHHHHH
Q 040338 232 IQIGKALVTMYAEGGSTQKADLAFELMSR--RNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFT 309 (385)
Q Consensus 232 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~l~~~~~~~~~~~~a~~~~~ 309 (385)
...+..+...+.+.|++++|+..|++..+ |+...+.. -... -.......+|..+..+|.+.|++++|+..++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~---~~~~---~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~ 341 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSE---KESK---ASESFLLAAFLNLAMCYLKLREYTKAVECCD 341 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCH---HHHH---HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCCh---HHHH---HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 34567788889999999999999998865 32100000 0000 0000001156666667777777777777777
Q ss_pred HHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-C-CcchHHHHHHHHHhcCChHHHHH-HHHHH
Q 040338 310 AMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-P-TCVIWGALLGACCSHYNTKLAEL-VMRNL 375 (385)
Q Consensus 310 ~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p-~~~~~~~li~~~~~~g~~~~a~~-~~~~~ 375 (385)
+..+..+ ...+..+..+|...|++++|+..|++..+. | +...+..+..++.+.++.+++.+ +++.|
T Consensus 342 ~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 342 KALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777666 666777777777788888888877777653 3 44567777777777777765543 34444
No 188
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.53 E-value=0.00038 Score=52.82 Aligned_cols=97 Identities=11% Similarity=-0.014 Sum_probs=77.4
Q ss_pred HHHHHHHhcccCChhhHHHHHHHHHhccch--------------hhHHHHHHHHHccCCHHHHHHHHHhCCC--------
Q 040338 288 FVSLLSGCSHSGPVTKGKHYFTAMAKFTYT--------------CYFVCMVDLLGLSGLLGEAKKLIDEMPS-------- 345 (385)
Q Consensus 288 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------------~~~~~li~~~~~~g~~~~A~~~~~~m~~-------- 345 (385)
+......+...|++++|...|++..+..+. ..|..+..++.+.|++++|+..+++..+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 344555666778888888888887776652 2788889999999999999998887653
Q ss_pred CC-CcchH----HHHHHHHHhcCChHHHHHHHHHHHhccccCCC
Q 040338 346 KP-TCVIW----GALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384 (385)
Q Consensus 346 ~p-~~~~~----~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 384 (385)
.| +...| .....++...|++++|+..|++.++..|...+
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~ 137 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 137 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence 34 44578 89999999999999999999999998887653
No 189
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.51 E-value=0.00046 Score=61.07 Aligned_cols=95 Identities=6% Similarity=-0.146 Sum_probs=66.7
Q ss_pred HHHHHHHhcccCChhhHHHHHHHHHh----------------ccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-C-
Q 040338 288 FVSLLSGCSHSGPVTKGKHYFTAMAK----------------FTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-P- 347 (385)
Q Consensus 288 ~~~l~~~~~~~~~~~~a~~~~~~~~~----------------~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p- 347 (385)
+..+...+.+.|++++|...|++..+ ... ...+..+..+|.+.|++++|++.+++..+. |
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 305 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 305 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch
Confidence 33444444455555555555555444 222 667777888888888888888888887763 4
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHhccccC
Q 040338 348 TCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKV 382 (385)
Q Consensus 348 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 382 (385)
+...|..+..+|...|++++|...+++..+..|.+
T Consensus 306 ~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~ 340 (370)
T 1ihg_A 306 NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED 340 (370)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 45678888888888888888888888888877654
No 190
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.50 E-value=0.00094 Score=51.15 Aligned_cols=100 Identities=10% Similarity=-0.126 Sum_probs=72.2
Q ss_pred HHHHHHHHHhhhccCChHHHHHHHHHHHHhc-----------------cCCCchHHHhHHHHHHhcCChhHHHHHHHhcc
Q 040338 52 YNTMINGGVRCLCVGNIKMALHLHGLVKKFY-----------------FVSDESIAKSSIDMHVKCGAVDYAESAFLRML 114 (385)
Q Consensus 52 ~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g-----------------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 114 (385)
+...-..+.. .|++++|...|....+.- -+.+..+|..+..+|.+.|++++|+..+++..
T Consensus 14 ~~~~G~~~~~---~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 14 LRQKGNELFV---QKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 4444444444 799999999999988750 12234677778888888888888888887766
Q ss_pred CCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCH
Q 040338 115 NPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSS 175 (385)
Q Consensus 115 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 175 (385)
+.+ +.+...|..+..+|...|++++|...|++..+. .|+.
T Consensus 91 ~~~-------------------p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~ 130 (162)
T 3rkv_A 91 KRE-------------------ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAA 130 (162)
T ss_dssp HHS-------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGG
T ss_pred hcC-------------------CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCC
Confidence 544 356677888888888888888888888887764 5543
No 191
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.48 E-value=0.00014 Score=51.52 Aligned_cols=94 Identities=12% Similarity=-0.014 Sum_probs=66.1
Q ss_pred CchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHH
Q 040338 86 DESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIE 165 (385)
Q Consensus 86 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 165 (385)
+...+..+...+.+.|++++|.+.|++..+.+ +.+...|..+..++.+.|++++|+..+++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 63 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-------------------PQNPVGYSNKAMALIKLGEYTQAIQMCQQ 63 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------------------CCCHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 45567777778888888888888887765544 34567778888888888888888888888
Q ss_pred HHHCCCCCC-------HhhHHHHHHHhcCccCccchhhHHHH
Q 040338 166 LWNHGFGLS-------SMLYATAFSARASVYDLEWGPHLHSR 200 (385)
Q Consensus 166 m~~~g~~p~-------~~t~~~ll~~~~~~~~~~~a~~~~~~ 200 (385)
..+. .|+ ...+..+..++...|+.+.+...++.
T Consensus 64 al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 64 GLRY--TSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHTS--CSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHh--CCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 8764 444 44555566666666777666655443
No 192
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.43 E-value=2.5e-05 Score=69.37 Aligned_cols=233 Identities=11% Similarity=0.048 Sum_probs=171.2
Q ss_pred hHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-CHhhHHHHHHHhcCccCccchhhHHHHHHH
Q 040338 125 IIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGL-SSMLYATAFSARASVYDLEWGPHLHSRVVH 203 (385)
Q Consensus 125 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 203 (385)
+++|.++-+++..| .+|..|..+..+.++..+|++-| ++. |...|..++.+..+.|.+++-.+.+....+
T Consensus 41 ldRa~eyA~~~n~p--~VWs~LgkAqL~~~~v~eAIdsy-------IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk 111 (624)
T 3lvg_A 41 LDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSY-------IKADDPSSYMEVVQAANTSGNWEELVKYLQMARK 111 (624)
T ss_dssp STTTTTSSSSCCCC--CCSSSHHHHTTTSSSCTTTTTSS-------CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTST
T ss_pred cHHHHHHHHHhCCc--cHHHHHHHHHHccCchHHHHHHH-------HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 33444444444344 35778888888888888887666 332 566788888888889988888888777665
Q ss_pred hCCCCchHHHHHHHHHHHhcCCCC------CCchhhHHHHHHHHHHcCCChhHHHHHHHhccc-----------------
Q 040338 204 MEPSLDVFVGSGLIDMYLKCGCNG------IESSIQIGKALVTMYAEGGSTQKADLAFELMSR----------------- 260 (385)
Q Consensus 204 ~~~~~~~~~~~~li~~~~~~g~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----------------- 260 (385)
.. -++.+=+.|+-+|++.++.. ..|++.-...+.+-|...|.++.|.-+|..+..
T Consensus 112 ~~--ke~~IDteLi~ayAk~~rL~elEefl~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~A 189 (624)
T 3lvg_A 112 KA--RESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAA 189 (624)
T ss_dssp TC--CSTTTTHHHHHHHHTSCSSSTTTSTTSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSS
T ss_pred Hh--cccccHHHHHHHHHhhCcHHHHHHHHcCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence 53 34445567888899888777 567777778889999999999999999887752
Q ss_pred -------CChhhHHHHHHHHHhcCCCCchHHHH--------HHHHHHHHhcccCChhhHHHHHHHHHhccc--hhhHHHH
Q 040338 261 -------RNMISWMVLISAFSQAGVLEKPRFFF--------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVCM 323 (385)
Q Consensus 261 -------~~~~~~~~li~~~~~~g~~~~a~~~~--------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~l 323 (385)
.++.||-.+-.+|...+.+.-|...- -...++..|-..|-+++.+.+++.-..... ..+|+-|
T Consensus 190 VdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTEL 269 (624)
T 3lvg_A 190 VDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTEL 269 (624)
T ss_dssp TTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHH
T ss_pred HHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHH
Confidence 37789999999999999988776443 455778888999999999999998774444 7888888
Q ss_pred HHHHHccCCHHHHHHHHHhCCCC----------CCcchHHHHHHHHHhcCChHHHH
Q 040338 324 VDLLGLSGLLGEAKKLIDEMPSK----------PTCVIWGALLGACCSHYNTKLAE 369 (385)
Q Consensus 324 i~~~~~~g~~~~A~~~~~~m~~~----------p~~~~~~~li~~~~~~g~~~~a~ 369 (385)
.-.|++- +++...+-++-.-.+ -....|.-++-.|..-.+++.|.
T Consensus 270 aILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 270 AILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 8888876 456666666555443 23456777777777777776554
No 193
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.43 E-value=0.00099 Score=58.94 Aligned_cols=119 Identities=10% Similarity=-0.057 Sum_probs=86.0
Q ss_pred HHHHHHHHHhhhccCChHHHHHHHHHHHHh---------------ccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCC
Q 040338 52 YNTMINGGVRCLCVGNIKMALHLHGLVKKF---------------YFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNP 116 (385)
Q Consensus 52 ~~~li~~~~~~~~~~~~~~a~~~~~~m~~~---------------g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 116 (385)
|..+-..+.+ .|++++|++.+++..+. --+.+..+|..+..+|.+.|++++|+..+++..+.
T Consensus 226 ~~~~g~~~~~---~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 226 LKNIGNTFFK---SQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHH---hcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 4445555444 89999999999998872 11234567888888888899999999998887765
Q ss_pred CccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-CHhhHHHHHHHhcCccCccch
Q 040338 117 SLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGL-SSMLYATAFSARASVYDLEWG 194 (385)
Q Consensus 117 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a 194 (385)
+ +.+...|..+..+|...|++++|+..|++..+. .| +...+..+..++...++.+++
T Consensus 303 ~-------------------p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 303 D-------------------PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp C-------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred C-------------------chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5 356778888888899999999999999888774 44 455555555555555554443
No 194
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.35 E-value=0.00025 Score=50.85 Aligned_cols=78 Identities=12% Similarity=-0.058 Sum_probs=50.2
Q ss_pred hHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-C-CcchHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 040338 303 KGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-P-TCVIWGALLGACCSHYNTKLAELVMRNLLQL 378 (385)
Q Consensus 303 ~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 378 (385)
.+...+++..+..+ ...+..+...|...|++++|++.|++.... | +...|..+..+|...|++++|...+++..+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45566666666555 556666666777777777777777666542 3 3446666677777777777777777776655
Q ss_pred cc
Q 040338 379 DV 380 (385)
Q Consensus 379 ~~ 380 (385)
.+
T Consensus 83 ~~ 84 (115)
T 2kat_A 83 AQ 84 (115)
T ss_dssp HH
T ss_pred cc
Confidence 44
No 195
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.30 E-value=0.00057 Score=59.68 Aligned_cols=97 Identities=6% Similarity=-0.209 Sum_probs=73.3
Q ss_pred HHHHHHHHhcccCChhhHHHHHHHHHhccc--h-----------------hhHHHHHHHHHccCCHHHHHHHHHhCCCC-
Q 040338 287 FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--T-----------------CYFVCMVDLLGLSGLLGEAKKLIDEMPSK- 346 (385)
Q Consensus 287 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~-----------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 346 (385)
.+..+...+.+.|++++|...|++...... . ..+..+..+|.+.|++++|+..+++....
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 260 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEE 260 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 455556666667777777777777665444 1 37888999999999999999999988663
Q ss_pred C-CcchHHHHHHHHHhcCChHHHHHHHHHHHhccccCC
Q 040338 347 P-TCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVF 383 (385)
Q Consensus 347 p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 383 (385)
| +...|..+..+|...|++++|...|++.++..|.+.
T Consensus 261 p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~ 298 (338)
T 2if4_A 261 EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDK 298 (338)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCH
Confidence 4 677899999999999999999999999998887654
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.28 E-value=0.0001 Score=52.31 Aligned_cols=88 Identities=9% Similarity=-0.082 Sum_probs=67.8
Q ss_pred HHHHHHHHhcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-CC-------cchHHHHH
Q 040338 287 FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-PT-------CVIWGALL 356 (385)
Q Consensus 287 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p~-------~~~~~~li 356 (385)
.+..+...+...|++++|...+++..+..+ ...+..+..++.+.|++++|++.+++.... |+ ...+..+.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 85 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLE 85 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHH
Confidence 355667778888999999999999888777 778888999999999999999999988764 55 44566666
Q ss_pred HHHHhcCChHHHHHHHHH
Q 040338 357 GACCSHYNTKLAELVMRN 374 (385)
Q Consensus 357 ~~~~~~g~~~~a~~~~~~ 374 (385)
.++...|+.+.|...+++
T Consensus 86 ~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 86 LAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHhHhhhHhHHHH
Confidence 677777766666554443
No 197
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.20 E-value=0.001 Score=49.56 Aligned_cols=91 Identities=11% Similarity=-0.126 Sum_probs=76.5
Q ss_pred HHHhcccCChhhHHHHHHHHHhccchhhHHHHHHHHHc----cCCHHHHHHHHHhCCCCCCcchHHHHHHHHHh----cC
Q 040338 292 LSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGL----SGLLGEAKKLIDEMPSKPTCVIWGALLGACCS----HY 363 (385)
Q Consensus 292 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~----~g 363 (385)
...|...+.+++|.+.|++..+.+.+.....|...|.. .+++++|.+.|++..+..+...+..|...|.. .+
T Consensus 32 g~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~ 111 (138)
T 1klx_A 32 SLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVK 111 (138)
T ss_dssp HHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCC
T ss_pred HHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCc
Confidence 34445556677799999999998888888888888888 89999999999998877788888899999998 89
Q ss_pred ChHHHHHHHHHHHhccccC
Q 040338 364 NTKLAELVMRNLLQLDVKV 382 (385)
Q Consensus 364 ~~~~a~~~~~~~~~~~~~~ 382 (385)
+.++|..++++..+.|..+
T Consensus 112 d~~~A~~~~~~Aa~~g~~~ 130 (138)
T 1klx_A 112 NEKQAVKTFEKACRLGSED 130 (138)
T ss_dssp CHHHHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHHCCCHH
Confidence 9999999999998887643
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.16 E-value=0.00098 Score=47.65 Aligned_cols=79 Identities=9% Similarity=-0.086 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHH
Q 040338 70 MALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISI 149 (385)
Q Consensus 70 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~ 149 (385)
.++..++...+.. +.+...+..+...|...|++++|...|++..+.+ +.+...|..+..+
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------------------p~~~~~~~~la~~ 62 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-------------------PTYSVAWKWLGKT 62 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-------------------CCcHHHHHHHHHH
Confidence 3555666665543 2355667777777777777777777776665433 2445567777777
Q ss_pred HHhCCCchHHHHHHHHHHH
Q 040338 150 LTRHGFGFETLCTFIELWN 168 (385)
Q Consensus 150 ~~~~~~~~~a~~~~~~m~~ 168 (385)
+...|++++|...|++..+
T Consensus 63 ~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 63 LQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 7777777777777777654
No 199
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.16 E-value=0.0036 Score=47.47 Aligned_cols=89 Identities=15% Similarity=0.096 Sum_probs=70.2
Q ss_pred cCChHHHHHHHHHHHHhccCC------Cc-----hHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhc
Q 040338 65 VGNIKMALHLHGLVKKFYFVS------DE-----SIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQ 133 (385)
Q Consensus 65 ~~~~~~a~~~~~~m~~~g~~~------~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~ 133 (385)
.|++++|+..|++..+..... +. ..|..+..++.+.|++++|+..+++..+ +|+
T Consensus 24 ~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~---------------l~n 88 (159)
T 2hr2_A 24 AGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH---------------YFN 88 (159)
T ss_dssp HTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHH
T ss_pred CCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---------------hhh
Confidence 799999999999999864321 22 3899999999999999999999876543 332
Q ss_pred CCC---CCCcchH----HHHHHHHHhCCCchHHHHHHHHHHH
Q 040338 134 KMP---ERDLVSW----NTMISILTRHGFGFETLCTFIELWN 168 (385)
Q Consensus 134 ~~~---~~~~~~~----~~li~~~~~~~~~~~a~~~~~~m~~ 168 (385)
+-. +.+...| ...-.++...|++++|+..|++..+
T Consensus 89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 221 3455677 8888999999999999999999865
No 200
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.04 E-value=0.055 Score=46.58 Aligned_cols=215 Identities=11% Similarity=-0.035 Sum_probs=128.4
Q ss_pred chHHHHHHH---HHhCCCch-HHHHHHHHHHHCCCCCCH-hhHHHHHHHhcCccC----------ccchhhHHHHHHHhC
Q 040338 141 VSWNTMISI---LTRHGFGF-ETLCTFIELWNHGFGLSS-MLYATAFSARASVYD----------LEWGPHLHSRVVHME 205 (385)
Q Consensus 141 ~~~~~li~~---~~~~~~~~-~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~ 205 (385)
..|..+... ..+.|.++ +|+++++.+... .|+. ..++.--..+...+. +++++.+++.+....
T Consensus 27 ~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~ 104 (331)
T 3dss_A 27 KLYQSATQAVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN 104 (331)
T ss_dssp HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC
Confidence 345444433 34556655 799999999874 5543 334432222222222 567788888887765
Q ss_pred CCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCC--ChhHHHHHHHhcccC---ChhhHHHHHHHHHhcCCC-
Q 040338 206 PSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGG--STQKADLAFELMSRR---NMISWMVLISAFSQAGVL- 279 (385)
Q Consensus 206 ~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~- 279 (385)
+ -+..+| +.-.-.+.+.| ++++++.+++.+.+. |-.+|+.-.-.+...|..
T Consensus 105 P-Kny~aW----------------------~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~ 161 (331)
T 3dss_A 105 P-KSYGTW----------------------HHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAP 161 (331)
T ss_dssp T-TCHHHH----------------------HHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCH
T ss_pred C-CCHHHH----------------------HHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCH
Confidence 4 233333 33333344444 467888888887763 445555555555666663
Q ss_pred CchHHHH------------HHHHHHHHhccc--------------CChhhHHHHHHHHHhccc--hhhHHHHHHHHHcc-
Q 040338 280 EKPRFFF------------FFVSLLSGCSHS--------------GPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLS- 330 (385)
Q Consensus 280 ~~a~~~~------------~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~- 330 (385)
+++++.+ +|+......... +.++++.+.+.......+ ...|+-+--.+.+.
T Consensus 162 ~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~ 241 (331)
T 3dss_A 162 AEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGS 241 (331)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc
Confidence 5666665 444333333322 457888899998888777 55555333334443
Q ss_pred ----------CCHHHHHHHHHhCCC-CCCcchHHHHHH-----HHHhcCChHHHHHHHHHHHhcccc
Q 040338 331 ----------GLLGEAKKLIDEMPS-KPTCVIWGALLG-----ACCSHYNTKLAELVMRNLLQLDVK 381 (385)
Q Consensus 331 ----------g~~~~A~~~~~~m~~-~p~~~~~~~li~-----~~~~~g~~~~a~~~~~~~~~~~~~ 381 (385)
+.++++++.++++.+ .|+. .|..+.. +....|..+++...++++++.+|.
T Consensus 242 ~~~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~ 307 (331)
T 3dss_A 242 GRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM 307 (331)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGG
T ss_pred CccccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcc
Confidence 457888888888876 3665 4443222 233467788999999999988875
No 201
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.03 E-value=0.011 Score=55.33 Aligned_cols=201 Identities=6% Similarity=-0.118 Sum_probs=135.3
Q ss_pred hHHHHHHHHHhhhcc-CChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCC----------hhHHHHHHHhccCCCcc
Q 040338 51 TYNTMINGGVRCLCV-GNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGA----------VDYAESAFLRMLNPSLF 119 (385)
Q Consensus 51 ~~~~li~~~~~~~~~-~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~~~~ 119 (385)
.|..+...+...... ..-++|++.++++.+.+.. +..+|+.--.++...|+ ++++++.++++.+.+
T Consensus 27 ~y~~~~~~~~~~~~~~~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-- 103 (567)
T 1dce_A 27 LYQSATQAVFQKRQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-- 103 (567)
T ss_dssp HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC--
Confidence 344444433332223 4556889999999987532 55677777777777666 889999998887666
Q ss_pred ccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCC--CchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCcc-Cccchhh
Q 040338 120 CWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHG--FGFETLCTFIELWNHGFGLSSMLYATAFSARASVY-DLEWGPH 196 (385)
Q Consensus 120 ~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~ 196 (385)
+.+..+|+.--..+.+.+ +++++++.++++.+.. +-|.+.|+.--..+.+.| .++++.+
T Consensus 104 -----------------pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~ 165 (567)
T 1dce_A 104 -----------------PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELA 165 (567)
T ss_dssp -----------------TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred -----------------CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHH
Confidence 467788988888888899 6699999999999863 237777877666666777 7788888
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc--C-ChhhHHHHHHHH
Q 040338 197 LHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR--R-NMISWMVLISAF 273 (385)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~ 273 (385)
.++.+++..+ -+...|+-....+.+.+......+.. -...+.++++++.++...+ | |...|+-+-..+
T Consensus 166 ~~~~~I~~~p-~n~saW~~r~~ll~~l~~~~~~~~~~--------~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll 236 (567)
T 1dce_A 166 FTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQG--------RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLL 236 (567)
T ss_dssp HHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSSSCC--------SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHH
T ss_pred HHHHHHHHCC-CCccHHHHHHHHHHhhcccccccccc--------cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Confidence 8888877654 35555655544444432110000000 0001356888888877764 4 678888888888
Q ss_pred HhcCCCCc
Q 040338 274 SQAGVLEK 281 (385)
Q Consensus 274 ~~~g~~~~ 281 (385)
.+.++.++
T Consensus 237 ~~~~~~~~ 244 (567)
T 1dce_A 237 GRAEPHDV 244 (567)
T ss_dssp SCCCCCSC
T ss_pred hcCCCccc
Confidence 88887655
No 202
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.02 E-value=0.00066 Score=51.40 Aligned_cols=98 Identities=8% Similarity=-0.155 Sum_probs=77.1
Q ss_pred cCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCCh----------hHHHHHHHhccCCCccccccchHHHHHHhcC
Q 040338 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAV----------DYAESAFLRMLNPSLFCWKFGIIRLLIMFQK 134 (385)
Q Consensus 65 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~----------~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~ 134 (385)
.+.+++|.+.++...+.. +.+...|+.+-.++.+.+++ ++|+..|++..+.+
T Consensus 15 ~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld----------------- 76 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID----------------- 76 (158)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-----------------
T ss_pred HhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-----------------
Confidence 578899999999999875 44788888888888888765 47888877776555
Q ss_pred CCCCCcchHHHHHHHHHhCC-----------CchHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 040338 135 MPERDLVSWNTMISILTRHG-----------FGFETLCTFIELWNHGFGLSSMLYATAFSA 184 (385)
Q Consensus 135 ~~~~~~~~~~~li~~~~~~~-----------~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 184 (385)
+.+..+|..+-.+|...| ++++|+..|++..+ +.|+...|...+..
T Consensus 77 --P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 77 --PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEM 133 (158)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred --cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 356778999999998764 89999999999988 47877777665553
No 203
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.99 E-value=0.0013 Score=45.70 Aligned_cols=64 Identities=11% Similarity=0.074 Sum_probs=34.5
Q ss_pred CchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHH
Q 040338 86 DESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIE 165 (385)
Q Consensus 86 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 165 (385)
+...+..+..+|.+.|++++|+..|++..+.+ +.+...|..+..+|...|++++|...|++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 66 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-------------------PDYVGTYYHLGKLYERLDRTDDAIDTYAQ 66 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------------------TTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34455555555555566666665555554433 23344555555555566666666655555
Q ss_pred HHH
Q 040338 166 LWN 168 (385)
Q Consensus 166 m~~ 168 (385)
..+
T Consensus 67 al~ 69 (100)
T 3ma5_A 67 GIE 69 (100)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
No 204
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.93 E-value=0.0066 Score=45.06 Aligned_cols=113 Identities=3% Similarity=-0.216 Sum_probs=78.6
Q ss_pred cCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHH
Q 040338 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWN 144 (385)
Q Consensus 65 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 144 (385)
.+++++|.+.|++..+.| .|+ .. |-..|...+.+++|.+.|++..+. .+...+.
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~---------------------g~~~a~~ 61 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMF--GC--LSLVSNSQINKQKLFQYLSKACEL---------------------NSGNGCR 61 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTT--HH--HHHHTCTTSCHHHHHHHHHHHHHT---------------------TCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHh--hh--HHHHHHcCCCHHHHHHHHHHHHcC---------------------CCHHHHH
Confidence 467788888888888776 222 22 666666667777788888776543 3445666
Q ss_pred HHHHHHHh----CCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcC----ccCccchhhHHHHHHHhCC
Q 040338 145 TMISILTR----HGFGFETLCTFIELWNHGFGLSSMLYATAFSARAS----VYDLEWGPHLHSRVVHMEP 206 (385)
Q Consensus 145 ~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~ 206 (385)
.|-..|.. .+++++|+.+|++..+.| +...+..|-..|.. .++.++|.+.++...+.|.
T Consensus 62 ~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 62 FLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 77777776 778888888888887764 34455555555555 6788888888888887764
No 205
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.92 E-value=0.0015 Score=58.81 Aligned_cols=81 Identities=9% Similarity=-0.049 Sum_probs=65.1
Q ss_pred ccCChhhHHHHHHHHHhccc----------hhhHHHHHHHHHccCCHHHHHHHHHhCCC---------CCC-cchHHHHH
Q 040338 297 HSGPVTKGKHYFTAMAKFTY----------TCYFVCMVDLLGLSGLLGEAKKLIDEMPS---------KPT-CVIWGALL 356 (385)
Q Consensus 297 ~~~~~~~a~~~~~~~~~~~~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~---------~p~-~~~~~~li 356 (385)
..|++++|..++++..+... ..+++.+..+|...|++++|+.++++... .|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 45678888888887665322 67788899999999999999999988765 133 34799999
Q ss_pred HHHHhcCChHHHHHHHHHHHh
Q 040338 357 GACCSHYNTKLAELVMRNLLQ 377 (385)
Q Consensus 357 ~~~~~~g~~~~a~~~~~~~~~ 377 (385)
..|...|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998865
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.91 E-value=0.0032 Score=42.36 Aligned_cols=29 Identities=10% Similarity=0.126 Sum_probs=14.5
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHH
Q 040338 140 LVSWNTMISILTRHGFGFETLCTFIELWN 168 (385)
Q Consensus 140 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 168 (385)
..++..+...+.+.|++++|...|++..+
T Consensus 43 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 43 AEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34444444555555555555555555444
No 207
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.84 E-value=0.0056 Score=41.08 Aligned_cols=82 Identities=10% Similarity=0.029 Sum_probs=63.8
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHH
Q 040338 139 DLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLID 218 (385)
Q Consensus 139 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 218 (385)
+...+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++..+..+ .+...+..+-.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence 35678888899999999999999999998752 23567788889999999999999999999998753 23445544444
Q ss_pred HHHh
Q 040338 219 MYLK 222 (385)
Q Consensus 219 ~~~~ 222 (385)
.+.+
T Consensus 86 ~~~~ 89 (91)
T 1na3_A 86 AKQK 89 (91)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 4433
No 208
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.76 E-value=0.00081 Score=50.92 Aligned_cols=87 Identities=13% Similarity=-0.091 Sum_probs=71.4
Q ss_pred ccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCH----------HHHHHHHHhCCC-CC-CcchHHHHHHHHHhc
Q 040338 297 HSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLL----------GEAKKLIDEMPS-KP-TCVIWGALLGACCSH 362 (385)
Q Consensus 297 ~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~----------~~A~~~~~~m~~-~p-~~~~~~~li~~~~~~ 362 (385)
+.+.+++|.+.++...+..+ ...+..+..++...+++ ++|+..|++..+ .| +...|..+..+|.+.
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 34567889999999988888 78888888888887765 589999988876 35 456899999999887
Q ss_pred C-----------ChHHHHHHHHHHHhccccCC
Q 040338 363 Y-----------NTKLAELVMRNLLQLDVKVF 383 (385)
Q Consensus 363 g-----------~~~~a~~~~~~~~~~~~~~~ 383 (385)
| ++++|++.|++.++.+|..+
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 5 89999999999999988753
No 209
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.74 E-value=0.016 Score=40.09 Aligned_cols=57 Identities=7% Similarity=-0.032 Sum_probs=36.4
Q ss_pred HHHHHHHhcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCC
Q 040338 288 FVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMP 344 (385)
Q Consensus 288 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 344 (385)
+..+...+...|++++|...|++..+..+ ...+..+..+|...|++++|.+.|++..
T Consensus 10 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 10 RYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34445555556666666666776666655 5566667777777777777777666543
No 210
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.69 E-value=0.0012 Score=45.53 Aligned_cols=86 Identities=6% Similarity=-0.079 Sum_probs=64.2
Q ss_pred HHHHhcccCChhhHHHHHHHHHhccc--hh-hHHHHHHHHHccCCHHHHHHHHHhCCCC-CCcc-hHHHHHHHHHhcCCh
Q 040338 291 LLSGCSHSGPVTKGKHYFTAMAKFTY--TC-YFVCMVDLLGLSGLLGEAKKLIDEMPSK-PTCV-IWGALLGACCSHYNT 365 (385)
Q Consensus 291 l~~~~~~~~~~~~a~~~~~~~~~~~~--~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~-p~~~-~~~~li~~~~~~g~~ 365 (385)
....+...|++++|...+++..+..+ .. .+..+..+|...|++++|.+.|++.... |+.. .+.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 34556778899999999999888777 56 7888889999999999999999888663 4432 2211 566
Q ss_pred HHHHHHHHHHHhccccCCC
Q 040338 366 KLAELVMRNLLQLDVKVFG 384 (385)
Q Consensus 366 ~~a~~~~~~~~~~~~~~~~ 384 (385)
.++...+++....+|.++.
T Consensus 78 ~~a~~~~~~~~~~~p~~~~ 96 (99)
T 2kc7_A 78 MDILNFYNKDMYNQLEHHH 96 (99)
T ss_dssp HHHHHHHCCTTHHHHCCSS
T ss_pred HHHHHHHHHHhccCccccc
Confidence 7777777777776666553
No 211
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.69 E-value=0.004 Score=56.12 Aligned_cols=86 Identities=14% Similarity=-0.087 Sum_probs=64.4
Q ss_pred HHHhcccCChhhHHHHHHHHHhccc----------hhhHHHHHHHHHccCCHHHHHHHHHhCCCC---------CC-cch
Q 040338 292 LSGCSHSGPVTKGKHYFTAMAKFTY----------TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK---------PT-CVI 351 (385)
Q Consensus 292 ~~~~~~~~~~~~a~~~~~~~~~~~~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------p~-~~~ 351 (385)
+..+...|++++|..++++..+... ..+++.+...|...|++++|+.++++...- |+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 4445566788888888887765322 667788888888889999988888876541 33 346
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 040338 352 WGALLGACCSHYNTKLAELVMRNLLQ 377 (385)
Q Consensus 352 ~~~li~~~~~~g~~~~a~~~~~~~~~ 377 (385)
++.|...|...|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88888889999999999888888764
No 212
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.66 E-value=0.027 Score=52.71 Aligned_cols=139 Identities=6% Similarity=-0.111 Sum_probs=105.4
Q ss_pred CChhHHHHHHHhccc--C-ChhhHHHHHHHHHhcCC----------CCchHHHH------------HHHHHHHHhcccC-
Q 040338 246 GSTQKADLAFELMSR--R-NMISWMVLISAFSQAGV----------LEKPRFFF------------FFVSLLSGCSHSG- 299 (385)
Q Consensus 246 g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~----------~~~a~~~~------------~~~~l~~~~~~~~- 299 (385)
..-++|++.++++.+ | +...|+.--.++...|+ ++++++.+ +|..-...+.+.+
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSS
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc
Confidence 345678888888876 3 34556554555555555 66677666 7777777777888
Q ss_pred -ChhhHHHHHHHHHhccc--hhhHHHHHHHHHccC-CHHHHHHHHHhCCCC--CCcchHHHHHHHHHhc-----------
Q 040338 300 -PVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSG-LLGEAKKLIDEMPSK--PTCVIWGALLGACCSH----------- 362 (385)
Q Consensus 300 -~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~--p~~~~~~~li~~~~~~----------- 362 (385)
+++++...++++.+..+ ...|+.-...+.+.| .++++.+.++++.+. -|...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 123 PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred ccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccc
Confidence 67999999999999888 667777777777788 899999999999875 4667788777776653
Q ss_pred ---CChHHHHHHHHHHHhccccCCC
Q 040338 363 ---YNTKLAELVMRNLLQLDVKVFG 384 (385)
Q Consensus 363 ---g~~~~a~~~~~~~~~~~~~~~~ 384 (385)
+.++++++.+++.+..+|.+.+
T Consensus 203 ~~~~~~~eel~~~~~ai~~~P~~~s 227 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFTDPNDQS 227 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHHCSSCSH
T ss_pred ccHHHHHHHHHHHHHHHhhCCCCcc
Confidence 5679999999999998887653
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.40 E-value=0.0046 Score=55.68 Aligned_cols=87 Identities=8% Similarity=-0.114 Sum_probs=56.4
Q ss_pred cCCChhHHHHHHHhccc-------C---C-hhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcccCChhhHHHHHHHHH
Q 040338 244 EGGSTQKADLAFELMSR-------R---N-MISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMA 312 (385)
Q Consensus 244 ~~g~~~~A~~~~~~m~~-------~---~-~~~~~~li~~~~~~g~~~~a~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 312 (385)
..|++++|+.++++..+ + + ..+++.|..+|...|++++|+.++ +++..++++..
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~---------------~~aL~i~~~~l 374 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYG---------------QKIIKPYSKHY 374 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHH---------------HHHHHHHHHHS
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHH---------------HHHHHHHHHHc
Confidence 45677777777766543 1 1 145555555565555555555442 44444444433
Q ss_pred hccc---hhhHHHHHHHHHccCCHHHHHHHHHhCCC
Q 040338 313 KFTY---TCYFVCMVDLLGLSGLLGEAKKLIDEMPS 345 (385)
Q Consensus 313 ~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 345 (385)
-... ..+++.|...|..+|++++|+.++++..+
T Consensus 375 G~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 375 PVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp CSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 3222 77888999999999999999999988764
No 214
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.36 E-value=0.17 Score=36.62 Aligned_cols=138 Identities=12% Similarity=-0.105 Sum_probs=97.6
Q ss_pred cCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHH
Q 040338 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWN 144 (385)
Q Consensus 65 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 144 (385)
.|.+++..++..+...+ .+..-||-+|.-....-+-+...++++.+-+.--.+.-|++.....-+-.+. .+..-.+
T Consensus 20 dG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n-~~se~vd 95 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINN-TLNEHVN 95 (172)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTT-CCCHHHH
T ss_pred hhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhc-chHHHHH
Confidence 57778888887777764 3556677776666666666666666666544322222244444444444432 3445677
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCC
Q 040338 145 TMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPS 207 (385)
Q Consensus 145 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 207 (385)
..++.+...|+-+.-.+++..+.. ..+|+....-.+..+|.+.|+..++.+++.+.-+.|++
T Consensus 96 ~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 96 KALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 788999999999999999988643 35778888889999999999999999999999999874
No 215
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.32 E-value=0.012 Score=57.64 Aligned_cols=166 Identities=16% Similarity=-0.018 Sum_probs=86.0
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhc
Q 040338 144 NTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKC 223 (385)
Q Consensus 144 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 223 (385)
..++..+.+.|.+++|+++.+. |. . -+......|+++.|.++.+.+
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~-------~~-~----~f~~~l~~~~~~~A~~~~~~~---------------------- 678 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD-------QD-Q----KFELALKVGQLTLARDLLTDE---------------------- 678 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC-------HH-H----HHHHHHHHTCHHHHHHHHTTC----------------------
T ss_pred HHHHHHHHhCCChHHheecCCC-------cc-h----heehhhhcCCHHHHHHHHHhh----------------------
Confidence 5666666777777777655521 11 1 122234456777666654332
Q ss_pred CCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhcccCChhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcccCChhh
Q 040338 224 GCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTK 303 (385)
Q Consensus 224 g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~l~~~~~~~~~~~~ 303 (385)
.+...|..+...+.+.|+++.|++.|..+.+ |..+...|...|+.+.. ..+.......|+.+.
T Consensus 679 ------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d-----~~~l~~l~~~~~~~~~~------~~~~~~a~~~~~~~~ 741 (814)
T 3mkq_A 679 ------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD-----LESLFLLHSSFNNKEGL------VTLAKDAETTGKFNL 741 (814)
T ss_dssp ------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-----HHHHHHHHHHTTCHHHH------HHHHHHHHHTTCHHH
T ss_pred ------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC-----hhhhHHHHHHcCCHHHH------HHHHHHHHHcCchHH
Confidence 1233456666666666677777777776653 22333333333333221 122333334445555
Q ss_pred HHHHHHHHHhccchhhHHHHHHHHHccCCHHHHHHHHHhCCCCCCc----chHHHHHHHHHhcCChHHH
Q 040338 304 GKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTC----VIWGALLGACCSHYNTKLA 368 (385)
Q Consensus 304 a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~----~~~~~li~~~~~~g~~~~a 368 (385)
|...+-.. .-+...++.|.+.+++++|..+-+... |.. .........+...|+.+.|
T Consensus 742 A~~~~~~~------g~~~~a~~~~~~~~~~~~A~~lA~~~~--~~~~~i~~~~~~~~~~L~~~~~~~~a 802 (814)
T 3mkq_A 742 AFNAYWIA------GDIQGAKDLLIKSQRFSEAAFLGSTYG--LGDNEVNDIVTKWKENLILNGKNTVS 802 (814)
T ss_dssp HHHHHHHH------TCHHHHHHHHHHTTCHHHHHHHHHHTT--CCHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHc------CCHHHHHHHHHHcCChHHHHHHHHHhC--CChHHHHHHHHHHHHHHHhccchhHH
Confidence 44444332 334445667777888888888877654 233 2333344455556654433
No 216
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.26 E-value=0.06 Score=46.79 Aligned_cols=145 Identities=8% Similarity=-0.090 Sum_probs=97.9
Q ss_pred CCCChhhHHHHHHHHHhhhc--cCChHHHHHHHHHHHHhccCCC-chHHHhHHHHHHh---cCChh-HHHHHHHhccCCC
Q 040338 45 GPRYLFTYNTMINGGVRCLC--VGNIKMALHLHGLVKKFYFVSD-ESIAKSSIDMHVK---CGAVD-YAESAFLRMLNPS 117 (385)
Q Consensus 45 ~~~~~~~~~~li~~~~~~~~--~~~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~---~g~~~-~a~~~~~~m~~~~ 117 (385)
+..+...|...+++.....+ .....+|..+|++..+. .|+ ...|..+..+|.- .+.+. ....-
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~-------- 259 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAA-------- 259 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH--------
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHH--------
Confidence 35578899999988765322 34568999999999986 454 3555554444431 11111 00000
Q ss_pred ccccccchHHHHHHhcC--CCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchh
Q 040338 118 LFCWKFGIIRLLIMFQK--MPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGP 195 (385)
Q Consensus 118 ~~~~~~~~~~a~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 195 (385)
+..+.+-... ..+.+..+|..+...+...|++++|...+++....+ |+...|..+-..+.-.|++++|.
T Consensus 260 -------l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~ 330 (372)
T 3ly7_A 260 -------LNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAA 330 (372)
T ss_dssp -------HHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHH
T ss_pred -------HHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHH
Confidence 0111111111 114577788887777777899999999999999874 88888878888888999999999
Q ss_pred hHHHHHHHhCCCC
Q 040338 196 HLHSRVVHMEPSL 208 (385)
Q Consensus 196 ~~~~~~~~~~~~~ 208 (385)
+.+++....++.+
T Consensus 331 e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 331 DAYLTAFNLRPGA 343 (372)
T ss_dssp HHHHHHHHHSCSH
T ss_pred HHHHHHHhcCCCc
Confidence 9999999886543
No 217
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.24 E-value=0.0078 Score=54.21 Aligned_cols=93 Identities=12% Similarity=0.026 Sum_probs=58.7
Q ss_pred HHHHHHcCCChhHHHHHHHhccc-------C-C---hhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcccCChhhHHH
Q 040338 238 LVTMYAEGGSTQKADLAFELMSR-------R-N---MISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKH 306 (385)
Q Consensus 238 li~~~~~~g~~~~A~~~~~~m~~-------~-~---~~~~~~li~~~~~~g~~~~a~~~~~~~~l~~~~~~~~~~~~a~~ 306 (385)
.+..+.+.|++++|+.++++..+ + + ..+++.|..+|...|++++|+.++ +++..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~---------------~~~L~ 357 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYG---------------TRTME 357 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHH---------------HHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHH---------------HHHHH
Confidence 35556667788888887776643 1 1 134555555555555555554442 33344
Q ss_pred HHHHHHhccc---hhhHHHHHHHHHccCCHHHHHHHHHhCCC
Q 040338 307 YFTAMAKFTY---TCYFVCMVDLLGLSGLLGEAKKLIDEMPS 345 (385)
Q Consensus 307 ~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 345 (385)
+++...-... ..+++.|...|...|++++|+.++++..+
T Consensus 358 i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 358 PYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4443322222 77788899999999999999999988765
No 218
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.17 E-value=0.033 Score=54.56 Aligned_cols=71 Identities=8% Similarity=-0.048 Sum_probs=39.4
Q ss_pred cchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHH
Q 040338 123 FGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVV 202 (385)
Q Consensus 123 ~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 202 (385)
|+++.|+++.+.+ .+...|..|...+.+.++++.|.++|..+.. |..+...+...|+.+...++-+...
T Consensus 666 ~~~~~A~~~~~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 666 GQLTLARDLLTDE--SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp TCHHHHHHHHTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444443333 3456788888888888888888888877643 2233333333455544444444443
Q ss_pred Hh
Q 040338 203 HM 204 (385)
Q Consensus 203 ~~ 204 (385)
..
T Consensus 735 ~~ 736 (814)
T 3mkq_A 735 TT 736 (814)
T ss_dssp HT
T ss_pred Hc
Confidence 33
No 219
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.15 E-value=0.074 Score=38.50 Aligned_cols=134 Identities=9% Similarity=-0.059 Sum_probs=87.8
Q ss_pred cCCChhHHHHHHHhcccC-ChhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHh--cccCChhhHHHHHHHHHhccc-hhh
Q 040338 244 EGGSTQKADLAFELMSRR-NMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGC--SHSGPVTKGKHYFTAMAKFTY-TCY 319 (385)
Q Consensus 244 ~~g~~~~A~~~~~~m~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~-~~~ 319 (385)
-.|.+++..++..+..++ +..-||-+|--....-+-+-..+++ ..+...+ ...|++......+- ..+. ...
T Consensus 19 ldG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vL--d~IGkiFDis~C~NlKrVi~C~~---~~n~~se~ 93 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVL--DKIGSYFDLDKCQNLKSVVECGV---INNTLNEH 93 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHH--HHHGGGSCGGGCSCTHHHHHHHH---HTTCCCHH
T ss_pred HhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHH--HHHhhhcCcHhhhcHHHHHHHHH---HhcchHHH
Confidence 357888888888887763 4455555554433332222222111 1111111 22344443333332 3333 777
Q ss_pred HHHHHHHHHccCCHHHHHHHHHhC-CCC-CCcchHHHHHHHHHhcCChHHHHHHHHHHHhccccC
Q 040338 320 FVCMVDLLGLSGLLGEAKKLIDEM-PSK-PTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKV 382 (385)
Q Consensus 320 ~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 382 (385)
++.-++.+..+|+-+...+++.++ ... |++...-.+..||.+.|+..+|.+++++..+.|++.
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~kE 158 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEKE 158 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhHH
Confidence 788899999999999999999995 443 788888889999999999999999999999998864
No 220
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.09 E-value=0.0065 Score=41.71 Aligned_cols=61 Identities=13% Similarity=0.010 Sum_probs=52.5
Q ss_pred HHHHHHccCCHHHHHHHHHhCCCC-C-Ccc-hHHHHHHHHHhcCChHHHHHHHHHHHhccccCC
Q 040338 323 MVDLLGLSGLLGEAKKLIDEMPSK-P-TCV-IWGALLGACCSHYNTKLAELVMRNLLQLDVKVF 383 (385)
Q Consensus 323 li~~~~~~g~~~~A~~~~~~m~~~-p-~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 383 (385)
....+.+.|++++|.+.|++..+. | +.. .|..+..+|...|++++|...+++.++.+|...
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 69 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP 69 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Confidence 456788899999999999988763 4 456 888899999999999999999999999888754
No 221
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.90 E-value=0.33 Score=37.22 Aligned_cols=125 Identities=16% Similarity=0.074 Sum_probs=88.6
Q ss_pred HHHHcCCChhHHHHHHHhcccCChhhHHHHHHHHHhcCCCCchHHHH----HHHHHHHHhcccCChhhHHHHHHHHHhcc
Q 040338 240 TMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF----FFVSLLSGCSHSGPVTKGKHYFTAMAKFT 315 (385)
Q Consensus 240 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 315 (385)
....+.|+++.|.++.+.+ .+...|..|.......|+++-|.+.| -+..+.-.|.-.|+.++...+-+....
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~iA~~-- 88 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNIAQT-- 88 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHHHH--
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHHH--
Confidence 4456789999999998877 46788999999999999999988877 455555555556666555544443333
Q ss_pred chhhHHHHHHHHHccCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 040338 316 YTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNL 375 (385)
Q Consensus 316 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 375 (385)
..-++.-...+...|+++++.++|.+...-| --+-.....|..+.|.++.+++
T Consensus 89 -~g~~n~af~~~l~lGdv~~~i~lL~~~~r~~------eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 89 -REDFGSMLLNTFYNNSTKERSSIFAEGGSLP------LAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp -TTCHHHHHHHHHHHTCHHHHHHHHHHTTCHH------HHHHHHHHTTCHHHHHHHHHHT
T ss_pred -CccHHHHHHHHHHcCCHHHHHHHHHHCCChH------HHHHHHHHcCcHHHHHHHHHHh
Confidence 3455666667778999999999998876522 1222233467778888887776
No 222
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.42 E-value=0.008 Score=44.97 Aligned_cols=85 Identities=15% Similarity=-0.067 Sum_probs=59.8
Q ss_pred cCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccC---CHHHHHHHHHhCCCC--C--CcchHHHHHHHHHhcCChHHH
Q 040338 298 SGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSG---LLGEAKKLIDEMPSK--P--TCVIWGALLGACCSHYNTKLA 368 (385)
Q Consensus 298 ~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~--p--~~~~~~~li~~~~~~g~~~~a 368 (385)
...+..+++-|.+..+.+. ..+...+..++++++ ++++++.+|++..+. | +...+-.|.-+|.+.|++++|
T Consensus 11 ~~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 11 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence 3445666777777666555 556666777888877 566888888877653 3 233455566677888899999
Q ss_pred HHHHHHHHhccccC
Q 040338 369 ELVMRNLLQLDVKV 382 (385)
Q Consensus 369 ~~~~~~~~~~~~~~ 382 (385)
.+.++.+++..|.+
T Consensus 91 ~~y~~~lL~ieP~n 104 (152)
T 1pc2_A 91 LKYVRGLLQTEPQN 104 (152)
T ss_dssp HHHHHHHHHHCTTC
T ss_pred HHHHHHHHhcCCCC
Confidence 99998888888765
No 223
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.19 E-value=0.077 Score=36.06 Aligned_cols=66 Identities=8% Similarity=-0.105 Sum_probs=37.4
Q ss_pred CCchHHHhHHHHHHhcCC---hhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHH
Q 040338 85 SDESIAKSSIDMHVKCGA---VDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLC 161 (385)
Q Consensus 85 ~~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 161 (385)
.++..+..+..++...++ .++|..++++..+.+ +.++.+...+...+.+.|++++|+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-------------------p~~~rA~~~lg~~~~~~g~y~~Ai~ 64 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-------------------PYNEAALSLIANDHFISFRFQEAID 64 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-------------------TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-------------------cCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 345555555555543332 466666666655444 2445555555666666666666666
Q ss_pred HHHHHHHC
Q 040338 162 TFIELWNH 169 (385)
Q Consensus 162 ~~~~m~~~ 169 (385)
.|+++.+.
T Consensus 65 ~w~~~l~~ 72 (93)
T 3bee_A 65 TWVLLLDS 72 (93)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHhh
Confidence 66666654
No 224
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.15 E-value=0.37 Score=41.89 Aligned_cols=128 Identities=7% Similarity=-0.063 Sum_probs=83.2
Q ss_pred hhhhHHHHHhhhC--CCC-hhhHHHHHHHHHhhhccC--ChHHHHH---HHHHHHH-hccCCCchHHHhHHHHHHhcCCh
Q 040338 33 LIDDDYRVFCDIG--PRY-LFTYNTMINGGVRCLCVG--NIKMALH---LHGLVKK-FYFVSDESIAKSSIDMHVKCGAV 103 (385)
Q Consensus 33 ~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~~~~~--~~~~a~~---~~~~m~~-~g~~~~~~~~~~li~~~~~~g~~ 103 (385)
+..+|..+|++.. .|+ ...|..+--++......+ ....... .+..... ...+.+..+|..+...+...|++
T Consensus 214 ~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~ 293 (372)
T 3ly7_A 214 SLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKT 293 (372)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCH
Confidence 6789999999877 454 234443333332111111 1111111 2221111 12356778888887777778999
Q ss_pred hHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHH
Q 040338 104 DYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAF 182 (385)
Q Consensus 104 ~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll 182 (385)
++|...+++....+ |+...|..+-..+.-.|++++|.+.|++.... .|...||...=
T Consensus 294 d~A~~~l~rAl~Ln--------------------~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~~~~ 350 (372)
T 3ly7_A 294 DESYQAINTGIDLE--------------------MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLYWIE 350 (372)
T ss_dssp HHHHHHHHHHHHHC--------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcC--------------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHHHHh
Confidence 99999998876543 66667777888889999999999999998874 77777765443
No 225
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.05 E-value=0.018 Score=51.50 Aligned_cols=168 Identities=8% Similarity=-0.026 Sum_probs=102.7
Q ss_pred CCChhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCc-----cc
Q 040338 46 PRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSL-----FC 120 (385)
Q Consensus 46 ~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-----~~ 120 (385)
..|+..|..+|.. +.+.|.+++-.+.+.-..+..- ++.+=+.|+-+|++.+++.+-.+++..-...++ .+
T Consensus 80 A~Dps~y~eVi~~---A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk~~rL~elEefl~~~N~A~iq~VGDrc 154 (624)
T 3lvg_A 80 ADDPSSYMEVVQA---ANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRC 154 (624)
T ss_dssp CSCCCSSSHHHHH---TTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHTSCSSSTTTSTTSCCSSSCTHHHHHHH
T ss_pred CCChHHHHHHHHH---HHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHhhCcHHHHHHHHcCCCcccHHHHHHHH
Confidence 3466778889998 4458999999988877666533 444446999999999988776655433222111 01
Q ss_pred cc-cchHHHHHHhcCCC------------------------CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCH
Q 040338 121 WK-FGIIRLLIMFQKMP------------------------ERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSS 175 (385)
Q Consensus 121 ~~-~~~~~a~~~~~~~~------------------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 175 (385)
+. |.++.|.-+|..++ ..++.||.-+-.+|...+.+.-|.-.--.+.- .||
T Consensus 155 f~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIv---had- 230 (624)
T 3lvg_A 155 YDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD- 230 (624)
T ss_dssp HHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS-
T ss_pred HHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH-
Confidence 11 33333333333332 24778899999999988888776544333332 222
Q ss_pred hhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcC
Q 040338 176 MLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG 224 (385)
Q Consensus 176 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 224 (385)
-...++..|-+.|.+++-+.+++.-+.. -......|+.|.-.|++-.
T Consensus 231 -eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY~ 277 (624)
T 3lvg_A 231 -ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK 277 (624)
T ss_dssp -CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSSC
T ss_pred -HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhcC
Confidence 1224566677777777777777765521 2345566666666666543
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.03 E-value=0.043 Score=41.01 Aligned_cols=86 Identities=8% Similarity=-0.200 Sum_probs=55.0
Q ss_pred ChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcC---ChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCC--Ccc
Q 040338 67 NIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCG---AVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPER--DLV 141 (385)
Q Consensus 67 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~--~~~ 141 (385)
.+..+.+-|.+..+.|. ++..+...+..++++.+ ++++++.+|++..+.+ .| +..
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-------------------~p~~~rd 72 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-------------------SKEEQRD 72 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-------------------CHHHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-------------------CccchHH
Confidence 34555566666655553 57777777777777776 5567777777665433 12 233
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC
Q 040338 142 SWNTMISILTRHGFGFETLCTFIELWNHGFGLS 174 (385)
Q Consensus 142 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 174 (385)
.+-.|--+|.+.|++++|.+.++.+.+. .|+
T Consensus 73 ~lY~LAv~~~kl~~Y~~A~~y~~~lL~i--eP~ 103 (152)
T 1pc2_A 73 YVFYLAVGNYRLKEYEKALKYVRGLLQT--EPQ 103 (152)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhc--CCC
Confidence 4444555667888888888888888773 563
No 227
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.86 E-value=0.15 Score=42.55 Aligned_cols=82 Identities=10% Similarity=0.074 Sum_probs=62.8
Q ss_pred ChhhHHHHHHHHHhccc----hhhHHHHHHHHHcc-----CCHHHHHHHHHhCCC-CCC--cchHHHHHHHHHhc-CChH
Q 040338 300 PVTKGKHYFTAMAKFTY----TCYFVCMVDLLGLS-----GLLGEAKKLIDEMPS-KPT--CVIWGALLGACCSH-YNTK 366 (385)
Q Consensus 300 ~~~~a~~~~~~~~~~~~----~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~-~p~--~~~~~~li~~~~~~-g~~~ 366 (385)
....|...+++..+..+ ...+..+...|.+. |+.+.|.+.|++..+ .|+ ..++......++.. |+.+
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 35677777787777776 55777788888874 888888888888776 363 66777777877774 8888
Q ss_pred HHHHHHHHHHhcccc
Q 040338 367 LAELVMRNLLQLDVK 381 (385)
Q Consensus 367 ~a~~~~~~~~~~~~~ 381 (385)
++.+.+++.++..+.
T Consensus 258 ~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 258 GFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHcCCCC
Confidence 888888888888777
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.23 E-value=0.065 Score=37.28 Aligned_cols=55 Identities=9% Similarity=-0.023 Sum_probs=30.5
Q ss_pred HHHHHhcccCChhhHHHHHHHHHhcc-------c--hhhHHHHHHHHHccCCHHHHHHHHHhCC
Q 040338 290 SLLSGCSHSGPVTKGKHYFTAMAKFT-------Y--TCYFVCMVDLLGLSGLLGEAKKLIDEMP 344 (385)
Q Consensus 290 ~l~~~~~~~~~~~~a~~~~~~~~~~~-------~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 344 (385)
.+...+...++++.|...++...+.. . ..++..+..+|.+.|+++.|...+++..
T Consensus 10 ~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al 73 (104)
T 2v5f_A 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL 73 (104)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34445555666666666666555431 1 4455555566666666666666655554
No 229
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.17 E-value=0.2 Score=34.72 Aligned_cols=68 Identities=9% Similarity=-0.089 Sum_probs=55.6
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHHCC------CCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCC
Q 040338 139 DLVSWNTMISILTRHGFGFETLCTFIELWNHG------FGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEP 206 (385)
Q Consensus 139 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 206 (385)
+..-+-.|...+.+.++++.|..+|+...+.- -.+....+..+..++.+.|+++.|...+++..+..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P 77 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 44556678889999999999999999987631 123466788899999999999999999999998754
No 230
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=93.85 E-value=0.35 Score=32.73 Aligned_cols=48 Identities=6% Similarity=-0.120 Sum_probs=32.8
Q ss_pred hhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-CC
Q 040338 301 VTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-PT 348 (385)
Q Consensus 301 ~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p~ 348 (385)
.++|..++++..+..+ +.....+...+.+.|++++|+..|+.+.+. |+
T Consensus 25 ~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5667777777776666 666666667777777777777777776654 44
No 231
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.80 E-value=0.76 Score=35.23 Aligned_cols=104 Identities=13% Similarity=0.095 Sum_probs=65.3
Q ss_pred HHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC
Q 040338 95 DMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLS 174 (385)
Q Consensus 95 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 174 (385)
....+.|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+..+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------------------------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D------ 62 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------------------------NDSITWERLIQEALAQGNASLAEMIYQTQHS------ 62 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC------
T ss_pred HHHHhcCCHHHHHHHHHHh------------------------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC------
Confidence 4455678888888877654 3456799999999999999999999888643
Q ss_pred HhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHH
Q 040338 175 SMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLA 254 (385)
Q Consensus 175 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 254 (385)
|..+.-.|.-.|+.+.-.++-+.....|- ++.-...+...|+++++.++
T Consensus 63 ---~~~L~~Ly~~tg~~e~L~kla~iA~~~g~----------------------------~n~af~~~l~lGdv~~~i~l 111 (177)
T 3mkq_B 63 ---FDKLSFLYLVTGDVNKLSKMQNIAQTRED----------------------------FGSMLLNTFYNNSTKERSSI 111 (177)
T ss_dssp ---HHHHHHHHHHHTCHHHHHHHHHHHHHTTC----------------------------HHHHHHHHHHHTCHHHHHHH
T ss_pred ---HHHHHHHHHHhCCHHHHHHHHHHHHHCcc----------------------------HHHHHHHHHHcCCHHHHHHH
Confidence 23333344445665554444444443332 13333445556777777777
Q ss_pred HHhcc
Q 040338 255 FELMS 259 (385)
Q Consensus 255 ~~~m~ 259 (385)
|.+..
T Consensus 112 L~~~~ 116 (177)
T 3mkq_B 112 FAEGG 116 (177)
T ss_dssp HHHTT
T ss_pred HHHCC
Confidence 65543
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.10 E-value=0.36 Score=34.64 Aligned_cols=84 Identities=14% Similarity=-0.061 Sum_probs=59.6
Q ss_pred CChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHH---HHHHHHhCCCC--C-Ccc-hHHHHHHHHHhcCChHHHH
Q 040338 299 GPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGE---AKKLIDEMPSK--P-TCV-IWGALLGACCSHYNTKLAE 369 (385)
Q Consensus 299 ~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~--p-~~~-~~~~li~~~~~~g~~~~a~ 369 (385)
..+..+.+-+......+. ..+-..+..++.++....+ ++.++++.... | ... ..-.|.-++.+.|++++|.
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 345566666666655454 5555557778888877666 88888888775 3 122 3334667889999999999
Q ss_pred HHHHHHHhccccC
Q 040338 370 LVMRNLLQLDVKV 382 (385)
Q Consensus 370 ~~~~~~~~~~~~~ 382 (385)
+.++.+++..|.+
T Consensus 95 ~~~~~lL~~eP~n 107 (126)
T 1nzn_A 95 KYVRGLLQTEPQN 107 (126)
T ss_dssp HHHHHHHHHCTTC
T ss_pred HHHHHHHHhCCCC
Confidence 9999999988865
No 233
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.80 E-value=1 Score=39.82 Aligned_cols=32 Identities=13% Similarity=0.072 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHhhhccCChHHHHHHHHHHHHh
Q 040338 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKF 81 (385)
Q Consensus 50 ~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~ 81 (385)
..|..++.........|+.+.+...+.+....
T Consensus 113 ~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L 144 (388)
T 2ff4_A 113 GRFVAEKTAGVHAAAAGRFEQASRHLSAALRE 144 (388)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 34555555433323357788888888777664
No 234
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.76 E-value=0.71 Score=41.62 Aligned_cols=50 Identities=12% Similarity=-0.072 Sum_probs=32.9
Q ss_pred CCchHHHHHHHHHHHC-----CCCCCHhhHHHHHHHhcCccCccchhhHHHHHHH
Q 040338 154 GFGFETLCTFIELWNH-----GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVH 203 (385)
Q Consensus 154 ~~~~~a~~~~~~m~~~-----g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 203 (385)
|++++|++.+-.+.+. +...+......++..|...++++...+.+..+.+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5677777777666542 2344556677788888888888777666655544
No 235
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=92.58 E-value=0.77 Score=38.37 Aligned_cols=94 Identities=10% Similarity=-0.044 Sum_probs=70.1
Q ss_pred ChHHHHHHHHHHHHhccCCC---chHHHhHHHHHHh-----cCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCC
Q 040338 67 NIKMALHLHGLVKKFYFVSD---ESIAKSSIDMHVK-----CGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPER 138 (385)
Q Consensus 67 ~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~ 138 (385)
....|...+++..+. .|+ -..|..|...|.. -|+.++|.+.|++..+.++ ..
T Consensus 178 ~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP------------------~~ 237 (301)
T 3u64_A 178 TVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCS------------------AH 237 (301)
T ss_dssp HHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCC------------------TT
T ss_pred hHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCC------------------CC
Confidence 355666666666664 555 5688999999998 4999999999988876552 23
Q ss_pred CcchHHHHHHHHHhC-CCchHHHHHHHHHHHCCCC--CCHhhHHH
Q 040338 139 DLVSWNTMISILTRH-GFGFETLCTFIELWNHGFG--LSSMLYAT 180 (385)
Q Consensus 139 ~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~g~~--p~~~t~~~ 180 (385)
+..++......+++. |+.+++.+.+++....... |+....+.
T Consensus 238 ~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 238 DPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp CSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 477888888888885 8999999999999887655 55444333
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=91.34 E-value=1 Score=32.34 Aligned_cols=87 Identities=9% Similarity=-0.213 Sum_probs=57.1
Q ss_pred CChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhH---HHHHHHhccCCCccccccchHHHHHHhcCCCCC--Cc
Q 040338 66 GNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDY---AESAFLRMLNPSLFCWKFGIIRLLIMFQKMPER--DL 140 (385)
Q Consensus 66 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~--~~ 140 (385)
..+..+.+-+......|. ++..+-..+..++.+..+..+ ++.+++...+.+ .| ..
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-------------------~p~~~R 74 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-------------------SKEEQR 74 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-------------------CHHHHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-------------------CcchHH
Confidence 444555666665555553 677777777788888776555 778887776544 12 22
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC
Q 040338 141 VSWNTMISILTRHGFGFETLCTFIELWNHGFGLS 174 (385)
Q Consensus 141 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 174 (385)
...-.|.-++.+.|++++|.+.++.+.+. .|+
T Consensus 75 d~lY~LAvg~yklg~Y~~A~~~~~~lL~~--eP~ 106 (126)
T 1nzn_A 75 DYVFYLAVGNYRLKEYEKALKYVRGLLQT--EPQ 106 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CCC
Confidence 33334556778888888888888888874 563
No 237
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.92 E-value=8.1 Score=39.52 Aligned_cols=166 Identities=10% Similarity=0.001 Sum_probs=93.5
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHCCCCCCH-----------------------hhHHHHHHHhcCccCccchhhHHHH
Q 040338 144 NTMISILTRHGFGFETLCTFIELWNHGFGLSS-----------------------MLYATAFSARASVYDLEWGPHLHSR 200 (385)
Q Consensus 144 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-----------------------~t~~~ll~~~~~~~~~~~a~~~~~~ 200 (385)
-.+..+|...|++++|...|.+.- .|+..+. .=|..++..+.+.+.++.+.++-..
T Consensus 846 yl~g~~~L~~ge~~~A~~~F~kaa-~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~l 924 (1139)
T 4fhn_B 846 YLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLL 924 (1139)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTCC-CSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHh-hhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 345567888899999999997642 1221110 1134444455555555555555444
Q ss_pred HHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhcccCC--hhhHHHHHHHHHhcCC
Q 040338 201 VVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRN--MISWMVLISAFSQAGV 278 (385)
Q Consensus 201 ~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~li~~~~~~g~ 278 (385)
.++...+.+. ......|..+.+.+...|++++|...+-.++.+. ......|+..+|..|.
T Consensus 925 Ai~~~~~~~~------------------~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cLr~LV~~lce~~~ 986 (1139)
T 4fhn_B 925 ADASKETDDE------------------DLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCLLDFVNQLTKQGK 986 (1139)
T ss_dssp HHHHCCSCCH------------------HHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHHHHHHHHHHHHCC
T ss_pred HHHhccCCCh------------------hhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCC
Confidence 4433211111 1122356778888888889999988888776543 3567778888888776
Q ss_pred CCchHHHHHHHHHHHHhcccCChhhHHHHHHHHHhcc-c----hhhHHHHHHHHHccCCHHHHHH
Q 040338 279 LEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFT-Y----TCYFVCMVDLLGLSGLLGEAKK 338 (385)
Q Consensus 279 ~~~a~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~----~~~~~~li~~~~~~g~~~~A~~ 338 (385)
.+.-.. +--.|..++..+++..-.+.. . +..|..|=.-+...|++-.|-.
T Consensus 987 ~~~L~~----------lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~ 1041 (1139)
T 4fhn_B 987 INQLLN----------YSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAA 1041 (1139)
T ss_dssp HHHHHH----------HTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHH
T ss_pred hhhhhC----------CCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHH
Confidence 443221 223555666666665433322 1 3445555555566666554433
No 238
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=89.23 E-value=2 Score=31.79 Aligned_cols=58 Identities=7% Similarity=-0.149 Sum_probs=44.1
Q ss_pred CCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchH
Q 040338 153 HGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVF 211 (385)
Q Consensus 153 ~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 211 (385)
.+++++|.++|+.+.+.+-+. ...+......=.+.|++..|.+++...+..+..|...
T Consensus 73 i~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred hcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 378999999999997763333 5555555555678999999999999999988765543
No 239
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.21 E-value=2.4 Score=28.90 Aligned_cols=63 Identities=11% Similarity=-0.041 Sum_probs=47.1
Q ss_pred CchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHH
Q 040338 155 FGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLID 218 (385)
Q Consensus 155 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 218 (385)
+.-+..+-++.+....+.|+.......+++|.|.+|+..|.++++-++..-- +...+|.-++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~-~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG-PHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc-CchhhHHHHHH
Confidence 3446667777777788999999999999999999999999999998877632 22445544443
No 240
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=87.14 E-value=7.5 Score=28.82 Aligned_cols=114 Identities=7% Similarity=-0.104 Sum_probs=76.0
Q ss_pred CCChhhHHHHHHHHHhhhccCCh------HHHHHHHHHHHHhccCCCch-HHHhHHHH------HHhcCChhHHHHHHHh
Q 040338 46 PRYLFTYNTMINGGVRCLCVGNI------KMALHLHGLVKKFYFVSDES-IAKSSIDM------HVKCGAVDYAESAFLR 112 (385)
Q Consensus 46 ~~~~~~~~~li~~~~~~~~~~~~------~~a~~~~~~m~~~g~~~~~~-~~~~li~~------~~~~g~~~~a~~~~~~ 112 (385)
..|..+|=..+..+-+ .|++ ++..++|+..... ++|+.. .|...|.. +-..+++++|.++|+.
T Consensus 10 p~~yd~W~~yl~llE~---~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~ 85 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEK---NSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQM 85 (161)
T ss_dssp CCSHHHHHHHHHHHHH---HTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHH
T ss_pred CCCHHHHHHHHHHHHH---cCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 5577788888887666 6888 8888999988875 566531 12222211 1234788999999987
Q ss_pred ccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 040338 113 MLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFS 183 (385)
Q Consensus 113 m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 183 (385)
+.+. . + +- ...|-.....=.+.|+...|.+++......+.+|. ..+.+.+.
T Consensus 86 a~~~-h--------------K---kF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~-~~le~a~~ 136 (161)
T 4h7y_A 86 ARAN-C--------------K---KF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL-EMLEIALR 136 (161)
T ss_dssp HHHH-C--------------T---TB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH-HHHHHHHH
T ss_pred HHHH-h--------------H---HH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH-HHHHHHHH
Confidence 7542 1 1 12 45666666666889999999999999998776654 34444443
No 241
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=86.99 E-value=1.9 Score=37.95 Aligned_cols=70 Identities=9% Similarity=-0.098 Sum_probs=58.3
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHH-----hCCCCchHHH
Q 040338 143 WNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVH-----MEPSLDVFVG 213 (385)
Q Consensus 143 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 213 (385)
...++..+...|++++++..++.+... -+.+...+..++.++.+.|+..+|.+.|+.+.+ .|+.|+..+-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 345667788899999999999998764 344888999999999999999999999998765 4888887654
No 242
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=86.49 E-value=5.4 Score=30.07 Aligned_cols=119 Identities=8% Similarity=-0.080 Sum_probs=73.0
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHCC-CCCC-------HhhHHHHHHHhcCccCccchhhHHHHHHHhCC--CCchH
Q 040338 142 SWNTMISILTRHGFGFETLCTFIELWNHG-FGLS-------SMLYATAFSARASVYDLEWGPHLHSRVVHMEP--SLDVF 211 (385)
Q Consensus 142 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~-------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~ 211 (385)
++-.=+..+...+.++.|+-+.+.+.... ..|+ ..++..+..++...+++..|...|++.++..- .-+..
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34445677788899999988877764421 2333 23566778888999999999999999765421 11111
Q ss_pred HHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc
Q 040338 212 VGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR 260 (385)
Q Consensus 212 ~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 260 (385)
.++++-..-..-+..+...+...---+-.+|.+.+++++|+.+++.++.
T Consensus 102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 1111110000111122344556666788999999999999999999864
No 243
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=84.71 E-value=5.2 Score=27.23 Aligned_cols=62 Identities=6% Similarity=-0.046 Sum_probs=48.4
Q ss_pred hhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHH
Q 040338 103 VDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAF 182 (385)
Q Consensus 103 ~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll 182 (385)
.=+..+-++.+...+. -|++.+..+.+.+|-|.+++.-|.++|+-.+.+ +.+...+|..++
T Consensus 26 ~~e~rrglN~l~~~Dl------------------VP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~l 86 (109)
T 1v54_E 26 AWELRKGMNTLVGYDL------------------VPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHHHTTSSB------------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHHHhcccc------------------CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHH
Confidence 3355566666666666 699999999999999999999999999998775 444455677776
Q ss_pred H
Q 040338 183 S 183 (385)
Q Consensus 183 ~ 183 (385)
.
T Consensus 87 q 87 (109)
T 1v54_E 87 Q 87 (109)
T ss_dssp H
T ss_pred H
Confidence 5
No 244
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=84.46 E-value=3.6 Score=27.85 Aligned_cols=87 Identities=15% Similarity=0.055 Sum_probs=55.9
Q ss_pred cCChHHHHHHHHHHHHhccCCCchHHHhHH--HHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcch
Q 040338 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSI--DMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVS 142 (385)
Q Consensus 65 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li--~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 142 (385)
.+..++|.-+-+.+...| + .-.-.+| ..+...|++++|..+.+.+ ..||...
T Consensus 19 ~H~HqEA~tIAdwL~~~~---~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----------------------c~pdlep 72 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLG---Q-DEAARLIRISSLANQGRYQEALAFAHGN----------------------PWPALEP 72 (115)
T ss_dssp TTCHHHHHHHHHHHHHTT---C-HHHHHHHHHHHHHHTTCHHHHHGGGTTC----------------------CCGGGHH
T ss_pred chHHHHHHHHHHHHHhCC---c-HHHHHHHHHHHHHcchhHHHHHHhcCCC----------------------CCchHHH
Confidence 466777777777777654 2 2223333 4455677777777766433 3688888
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHH
Q 040338 143 WNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYAT 180 (385)
Q Consensus 143 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ 180 (385)
|-+|-. .+.|-.+++...+.++...| .|....|..
T Consensus 73 w~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 73 WFALCE--WHLGLGAALDRRLAGLGGSS-DPALADFAA 107 (115)
T ss_dssp HHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHHHH
T ss_pred HHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHHH
Confidence 877654 47788888888887777664 444555543
No 245
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=84.41 E-value=27 Score=32.79 Aligned_cols=106 Identities=9% Similarity=-0.052 Sum_probs=62.0
Q ss_pred HHHhcCCCCchHHHHHHHHHHHHhcccCChhhHHHHHHHHHhccc-hhhHHHHHHHHHccCCHHHHHHHHHhCCCCC-C-
Q 040338 272 AFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTY-TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKP-T- 348 (385)
Q Consensus 272 ~~~~~g~~~~a~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p-~- 348 (385)
...+...+..+.....+..+.......+...++...+........ .....-.+....+.|+++.|...|+.|...+ +
T Consensus 239 ~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~ 318 (618)
T 1qsa_A 239 SLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEK 318 (618)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGS
T ss_pred hhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHHHHHHCCCHHHHHHHHHHcccccccc
Confidence 333334444444433555555556666634455555555433322 2223333444456799999999999998752 2
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 040338 349 CVIWGALLGACCSHYNTKLAELVMRNLLQ 377 (385)
Q Consensus 349 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 377 (385)
..-.--+..++...|+.++|..+|+++.+
T Consensus 319 ~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 319 DEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 22223355677788999999999888764
No 246
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=84.11 E-value=15 Score=35.43 Aligned_cols=130 Identities=10% Similarity=-0.023 Sum_probs=75.2
Q ss_pred HHHHHHHHhCCC-chHHHHHHHHHHHCCCCCCHhhH--HHHHHHhcCccC-ccchhhHHHHHHHh------CCCCchHHH
Q 040338 144 NTMISILTRHGF-GFETLCTFIELWNHGFGLSSMLY--ATAFSARASVYD-LEWGPHLHSRVVHM------EPSLDVFVG 213 (385)
Q Consensus 144 ~~li~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~t~--~~ll~~~~~~~~-~~~a~~~~~~~~~~------~~~~~~~~~ 213 (385)
..|+..+...++ .+.|.++|+++... .|...++ ..++..+...++ --+|.+++.+.++. ...+.....
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~--~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKK--DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhh--CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 445556666666 57899999999886 4433332 233443333332 22355555554431 111111111
Q ss_pred HHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc--C-ChhhHHHHHHHHHhcCCCCchHHHH
Q 040338 214 SGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR--R-NMISWMVLISAFSQAGVLEKPRFFF 286 (385)
Q Consensus 214 ~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~ 286 (385)
..++.. +....+.-.+.+...|+++.|+.+-++... | +-.+|..|..+|...|+++.|+-.+
T Consensus 330 ~~~~~~-----------~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtL 394 (754)
T 4gns_B 330 ARLMNC-----------MSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAI 394 (754)
T ss_dssp HHHHHH-----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccCc-----------chHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHH
Confidence 111100 111222334556678899999999887765 5 5689999999999999999998777
No 247
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.54 E-value=24 Score=31.55 Aligned_cols=180 Identities=14% Similarity=0.091 Sum_probs=107.3
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHHHHC-CCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHH
Q 040338 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNH-GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGL 216 (385)
Q Consensus 138 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 216 (385)
........++..|...++++...+.+..+.+. |..+... ..+++.+. ..+. .-..++..+.-.+
T Consensus 54 s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai--~~~V~~~~---------~~l~----~~~~~d~~~~~~~ 118 (445)
T 4b4t_P 54 SSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSI--QYMIQKVM---------EYLK----SSKSLDLNTRISV 118 (445)
T ss_dssp TCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHH--HHHHHHHH---------HHHH----HHCTTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHH--HHHHHHHH---------HHHh----cCCchhHHHHHHH
Confidence 34556777889999999999988877766543 3222222 22332221 1111 1122344444444
Q ss_pred HHHHHhc--CCCCCC-chhhHHHHHHHHHHcCCChhHHHHHHHhcccCChhhHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 040338 217 IDMYLKC--GCNGIE-SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLS 293 (385)
Q Consensus 217 i~~~~~~--g~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~l~~ 293 (385)
+...... |..-+. ........|...|-..|++.+|..++..+... |+ |..+....+-.+...+.
T Consensus 119 i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~E---t~----------~~~~~~~kve~~l~q~r 185 (445)
T 4b4t_P 119 IETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVE---TY----------GSMEMSEKIQFILEQME 185 (445)
T ss_dssp HHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---HC----------SSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH---HH----------hcccHHHHHHHHHHHHH
Confidence 4433221 111111 12334456778888899999999999888621 11 22233333335666777
Q ss_pred HhcccCChhhHHHHHHHHHhccc---------hhhHHHHHHHHHccCCHHHHHHHHHhCCC
Q 040338 294 GCSHSGPVTKGKHYFTAMAKFTY---------TCYFVCMVDLLGLSGLLGEAKKLIDEMPS 345 (385)
Q Consensus 294 ~~~~~~~~~~a~~~~~~~~~~~~---------~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 345 (385)
.|...+++.+|..+..++..... ...+...+..+...+++.+|.+.|.+..+
T Consensus 186 l~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 186 LSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 78888888888888887653221 55667788888889999998888877654
No 248
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=83.05 E-value=23 Score=31.11 Aligned_cols=143 Identities=8% Similarity=-0.072 Sum_probs=91.9
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHhccc--------CChhhHHHHHHHHHhcCCCC-chHHHH------------HH----
Q 040338 234 IGKALVTMYAEGGSTQKADLAFELMSR--------RNMISWMVLISAFSQAGVLE-KPRFFF------------FF---- 288 (385)
Q Consensus 234 ~~~~li~~~~~~g~~~~A~~~~~~m~~--------~~~~~~~~li~~~~~~g~~~-~a~~~~------------~~---- 288 (385)
....|...|.+.|+.++..+++..... ........|++.+....+.. .-.++. +|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~ 100 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677778888888888888877653 12234555666665543221 111111 23
Q ss_pred --HHHHHHhcccCChhhHHHHHHHHHhccc--------hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-----CCcchHH
Q 040338 289 --VSLLSGCSHSGPVTKGKHYFTAMAKFTY--------TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-----PTCVIWG 353 (385)
Q Consensus 289 --~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----p~~~~~~ 353 (385)
..++..|...|++.+|..++..+.+.-. ..++..-++.|...+++..+...+...... +++..-.
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a 180 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG 180 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence 2678888999999999888888777422 677777888899999999998888766431 2222211
Q ss_pred ----HHHHHHH-hcCChHHHHHHHHHHH
Q 040338 354 ----ALLGACC-SHYNTKLAELVMRNLL 376 (385)
Q Consensus 354 ----~li~~~~-~~g~~~~a~~~~~~~~ 376 (385)
.-.-.+. ..+++..|...|=+..
T Consensus 181 ~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 181 ALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 1122245 6788988888776653
No 249
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=82.80 E-value=3.8 Score=27.80 Aligned_cols=87 Identities=14% Similarity=0.035 Sum_probs=56.0
Q ss_pred cCChHHHHHHHHHHHHhccCCCchHHHhHH--HHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcch
Q 040338 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSI--DMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVS 142 (385)
Q Consensus 65 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li--~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 142 (385)
.+..++|.-+-+.+...| + .-.-.+| ..+...|++++|..+.+.+. .||...
T Consensus 20 ~H~HqEA~tIAdwL~~~~---~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----------------------~pdlep 73 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKG---E-EEAVQLIRLSSLMNRGDYASALQQGNKLA----------------------YPDLEP 73 (116)
T ss_dssp TTCHHHHHHHHHHHHHTT---C-HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----------------------CGGGHH
T ss_pred chHHHHHHHHHHHHHhCC---c-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----------------------CchHHH
Confidence 466778888887777654 2 2223344 45566788888888775443 588888
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHH
Q 040338 143 WNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYAT 180 (385)
Q Consensus 143 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ 180 (385)
|-+|-.. +.|-.+++...+.++...| .|....|..
T Consensus 74 w~ALce~--rlGl~s~le~rL~~la~sg-~p~~q~Fa~ 108 (116)
T 2p58_C 74 WLALCEY--RLGLGSALESRLNRLARSQ-DPRIQTFVN 108 (116)
T ss_dssp HHHHHHH--HHTCHHHHHHHHHHHTTCC-CHHHHHHHH
T ss_pred HHHHHHH--hcccHHHHHHHHHHHHhCC-CHHHHHHHH
Confidence 8776543 6777778877777776554 444445443
No 250
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=80.92 E-value=5.4 Score=28.82 Aligned_cols=59 Identities=12% Similarity=-0.035 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHH
Q 040338 158 ETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLI 217 (385)
Q Consensus 158 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 217 (385)
+..+-++.+...++.|+.......+++|-+.+|+..|.++++-++..- .+...+|.-++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence 455666666677788888888888888888888888888888887653 22244454443
No 251
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=79.77 E-value=23 Score=34.17 Aligned_cols=50 Identities=10% Similarity=-0.035 Sum_probs=31.2
Q ss_pred hcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCC
Q 040338 295 CSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMP 344 (385)
Q Consensus 295 ~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 344 (385)
|...|+++.|..+-++....-+ -.+|..|..+|...|+++.|+-.+..++
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3345666666666666665555 5566666666666666666666666554
No 252
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=78.89 E-value=30 Score=29.54 Aligned_cols=197 Identities=11% Similarity=-0.025 Sum_probs=111.7
Q ss_pred CChHHHHHHHHHHHHhccC----CCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcc
Q 040338 66 GNIKMALHLHGLVKKFYFV----SDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLV 141 (385)
Q Consensus 66 ~~~~~a~~~~~~m~~~g~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 141 (385)
+++++.+.-++.-++.|-- ---.+|.++..=|.+.+++++|++++-.
T Consensus 10 ~~~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~----------------------------- 60 (336)
T 3lpz_A 10 NKIERIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILAS----------------------------- 60 (336)
T ss_dssp CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-----------------------------
T ss_pred hHHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHH-----------------------------
Confidence 3444455555555555411 1124567778888889999999998732
Q ss_pred hHHHHHHHHHhCCCchHHHH----HHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchH-HHHHH
Q 040338 142 SWNTMISILTRHGFGFETLC----TFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVF-VGSGL 216 (385)
Q Consensus 142 ~~~~li~~~~~~~~~~~a~~----~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l 216 (385)
. ...+.+.|+...+.+ +++-+.+.++++|..+..-++..+.....-+ |+.. ..+..
T Consensus 61 ---G-A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~---------------p~r~~fi~~a 121 (336)
T 3lpz_A 61 ---V-SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGE---------------PVRKRFVKEM 121 (336)
T ss_dssp ---H-HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTC---------------HHHHHHHHHH
T ss_pred ---H-HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCC---------------cHHHHHHHHH
Confidence 1 223445566655444 3455666788888887777777666443211 1111 22223
Q ss_pred HHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhcccCChhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHhc
Q 040338 217 IDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCS 296 (385)
Q Consensus 217 i~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~l~~~~~ 296 (385)
|..-.+.|.. ...|...-..+...|.+.+++.+|+.-|=.-.++....|..++.-+...+...++ .+| ....+--|.
T Consensus 122 i~WS~~~g~~-~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~-dlf-iaRaVL~yL 198 (336)
T 3lpz_A 122 IDWSKKFGDY-PAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTA-PLY-CARAVLPYL 198 (336)
T ss_dssp HHHHHHHSSC-TTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGH-HHH-HHHHHHHHH
T ss_pred HHHHhhcCCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccH-HHH-HHHHHHHHH
Confidence 3333333321 2344555677888899999999999988422222336776655555555443333 444 223333445
Q ss_pred ccCChhhHHHHHHHHHh
Q 040338 297 HSGPVTKGKHYFTAMAK 313 (385)
Q Consensus 297 ~~~~~~~a~~~~~~~~~ 313 (385)
..+++..|..+++...+
T Consensus 199 ~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 199 LVANVRAANTAYRIFTS 215 (336)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHH
Confidence 56788888777666553
No 253
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=78.55 E-value=62 Score=33.05 Aligned_cols=205 Identities=9% Similarity=-0.066 Sum_probs=123.2
Q ss_pred cCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCcc-c-cccchHHHHHHhcCCCCC--Cc
Q 040338 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLF-C-WKFGIIRLLIMFQKMPER--DL 140 (385)
Q Consensus 65 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~-~~~~~~~a~~~~~~~~~~--~~ 140 (385)
.+..+.+.++.... +-+...--.+..+|..+|++++|.+.|.+....-.. . -.........+....... -.
T Consensus 825 ~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~ 899 (1139)
T 4fhn_B 825 FKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLS 899 (1139)
T ss_dssp HSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSH
T ss_pred hhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHH
Confidence 55665555543322 234444445567888899999999999886321100 0 001111111121111111 12
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHCCC-C-CC--HhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHH
Q 040338 141 VSWNTMISILTRHGFGFETLCTFIELWNHGF-G-LS--SMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGL 216 (385)
Q Consensus 141 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~-p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 216 (385)
.=|.-++..+-+.+.++.+.++-....+..- . ++ ...|..+++++...|++++|...+-.+.+... -......|
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~L 977 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHH
Confidence 3367788899999999999988877665421 1 11 12578899999999999999999988866543 45677788
Q ss_pred HHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc-----CChhh-HHHHHHHHHhcCCCCchHHHH
Q 040338 217 IDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR-----RNMIS-WMVLISAFSQAGVLEKPRFFF 286 (385)
Q Consensus 217 i~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~-~~~li~~~~~~g~~~~a~~~~ 286 (385)
+..+|..|+. ..|+ .+--.|..++..+++..--+ .+... |..|=.-+...|++.+|-.++
T Consensus 978 V~~lce~~~~---------~~L~-~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vm 1043 (1139)
T 4fhn_B 978 VNQLTKQGKI---------NQLL-NYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAII 1043 (1139)
T ss_dssp HHHHHHHCCH---------HHHH-HHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHhCCCh---------hhhh-CCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHH
Confidence 8888877742 2222 23345666777777654322 12223 444555567788888886664
No 254
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=75.93 E-value=35 Score=28.80 Aligned_cols=196 Identities=11% Similarity=-0.054 Sum_probs=117.3
Q ss_pred ChHHHHHHHHHHHHhccC-CCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHH
Q 040338 67 NIKMALHLHGLVKKFYFV-SDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNT 145 (385)
Q Consensus 67 ~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 145 (385)
.+++.+.-++.-++.|-- ---..|.++..=|.+.+++++|.+++..
T Consensus 12 ~~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~--------------------------------- 58 (312)
T 2wpv_A 12 KLAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQ--------------------------------- 58 (312)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH---------------------------------
T ss_pred HHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHH---------------------------------
Confidence 344555555555555411 1234577788888888999999998732
Q ss_pred HHHHHHhCCCchHHHH----HHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHH
Q 040338 146 MISILTRHGFGFETLC----TFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYL 221 (385)
Q Consensus 146 li~~~~~~~~~~~a~~----~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 221 (385)
-...+.+.|+...|-+ +++...+.++++|......++..+.....-+. .-....+..++.-.
T Consensus 59 ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~--------------~r~~fi~~ai~WS~ 124 (312)
T 2wpv_A 59 GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEP--------------NLKDVITGMNNWSI 124 (312)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCT--------------THHHHHHHHHHHHH
T ss_pred HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCc--------------hHHHHHHHHHHHHh
Confidence 1223455677665554 45556667888888887777776655432210 11222333444444
Q ss_pred hcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhcccCChhhHHHHHHHHHhc---CCCCchHHHHHHHHHHHHhccc
Q 040338 222 KCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQA---GVLEKPRFFFFFVSLLSGCSHS 298 (385)
Q Consensus 222 ~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~~~l~~~~~~~ 298 (385)
+.|.. ...+......+...|.+.|++.+|+..|-.-.+.|...+..++.-+... |...++ .+| ....+--|.-.
T Consensus 125 ~~g~~-~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~-dlf-~~RaVL~yL~l 201 (312)
T 2wpv_A 125 KFSEY-KFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTV-AEF-FSRLVFNYLFI 201 (312)
T ss_dssp HTSSC-TTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHH-HHH-HHHHHHHHHHT
T ss_pred hcCCC-CCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchH-HHH-HHHHHHHHHHh
Confidence 44432 2345667788888999999999999988633333566666665555554 544443 443 23333344567
Q ss_pred CChhhHHHHHHHHH
Q 040338 299 GPVTKGKHYFTAMA 312 (385)
Q Consensus 299 ~~~~~a~~~~~~~~ 312 (385)
+++..|..+++...
T Consensus 202 ~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 202 SNISFAHESKDIFL 215 (312)
T ss_dssp TBHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 78888888888764
No 255
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=75.35 E-value=8 Score=27.88 Aligned_cols=60 Identities=10% Similarity=-0.025 Sum_probs=45.9
Q ss_pred HHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCC
Q 040338 58 GGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPS 117 (385)
Q Consensus 58 ~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 117 (385)
++.+.....+..+++.+++++.+.+..-....+--|.-++.+.|+.++|.+..+.+.+..
T Consensus 49 ~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 49 GLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred HHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 333444456788999999999987633345666677789999999999999999887655
No 256
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=74.85 E-value=17 Score=26.15 Aligned_cols=68 Identities=7% Similarity=-0.158 Sum_probs=35.6
Q ss_pred cCCCchHHHhHHHHHHhcCCh---hHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHH
Q 040338 83 FVSDESIAKSSIDMHVKCGAV---DYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFET 159 (385)
Q Consensus 83 ~~~~~~~~~~li~~~~~~g~~---~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 159 (385)
-.|+..+--.+..++.+..+. .+++.+++++.+.+. .......-.|.-++.+.|++++|
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~------------------~~~Rd~LYyLAvg~yklgdY~~A 97 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAE------------------SRRRECLYYLTIGCYKLGEYSMA 97 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG------------------GGHHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCc------------------chhHHHHHHHHHHHHHhhhHHHH
Confidence 345555555555666665433 345555555433221 11223334445566666777777
Q ss_pred HHHHHHHHH
Q 040338 160 LCTFIELWN 168 (385)
Q Consensus 160 ~~~~~~m~~ 168 (385)
.+..+.+.+
T Consensus 98 r~y~d~lL~ 106 (134)
T 3o48_A 98 KRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 766666665
No 257
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=71.67 E-value=11 Score=27.57 Aligned_cols=85 Identities=8% Similarity=-0.059 Sum_probs=55.2
Q ss_pred hhhhHHHHHhhh-C-CCChhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHH
Q 040338 33 LIDDDYRVFCDI-G-PRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAF 110 (385)
Q Consensus 33 ~~~~A~~~~~~~-~-~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 110 (385)
.++..++-|+.- . .|+..+--.+--++.+.....+..+++.+++++.+.+..-.....--|.-++.+.|++++|.+..
T Consensus 21 eL~~lr~qY~~E~~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~ 100 (144)
T 1y8m_A 21 QLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYV 100 (144)
T ss_dssp HHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHH
Confidence 444555555433 1 33333322233344444456788899999999998754334455566778899999999999999
Q ss_pred HhccCCC
Q 040338 111 LRMLNPS 117 (385)
Q Consensus 111 ~~m~~~~ 117 (385)
+.+.+..
T Consensus 101 d~lL~~e 107 (144)
T 1y8m_A 101 DTLFEHE 107 (144)
T ss_dssp HHHHHTC
T ss_pred HHHHhcC
Confidence 8886654
No 258
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=71.49 E-value=9.7 Score=31.29 Aligned_cols=30 Identities=7% Similarity=-0.012 Sum_probs=19.9
Q ss_pred HHHHHHH--HhcCChHHHHHHHHHHHhccccC
Q 040338 353 GALLGAC--CSHYNTKLAELVMRNLLQLDVKV 382 (385)
Q Consensus 353 ~~li~~~--~~~g~~~~a~~~~~~~~~~~~~~ 382 (385)
..++.+. ...|+.++|.++-+++.+.-+..
T Consensus 102 ~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~ 133 (273)
T 1zbp_A 102 KSLVSFNLSMVSQDYEQVSELALQIEELRQEK 133 (273)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence 3444443 34588999999888887765443
No 259
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=71.07 E-value=27 Score=25.29 Aligned_cols=46 Identities=7% Similarity=-0.039 Sum_probs=37.9
Q ss_pred CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 040338 137 ERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFS 183 (385)
Q Consensus 137 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 183 (385)
-|++.+..+.+.+|-+.+++.-|.++|+-.+.+ ..+...+|..++.
T Consensus 85 VPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 85 VPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 688889999999999999999999999988765 4455666777764
No 260
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=70.77 E-value=5.9 Score=32.56 Aligned_cols=70 Identities=11% Similarity=0.033 Sum_probs=45.1
Q ss_pred HHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCC--CCC
Q 040338 96 MHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG--FGL 173 (385)
Q Consensus 96 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~p 173 (385)
.+.+.|.++++++....-.+.+ +.|...-..|+..+|-.|++++|.+.++...+.. ..|
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-------------------P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~ 66 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-------------------PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 66 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-------------------CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence 3445677777777766655544 3566677778888888888888888887776642 222
Q ss_pred CHhhHHHHHHH
Q 040338 174 SSMLYATAFSA 184 (385)
Q Consensus 174 ~~~t~~~ll~~ 184 (385)
...+|..+|++
T Consensus 67 ~a~~yr~lI~a 77 (273)
T 1zbp_A 67 GASQLRHLVKA 77 (273)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33455555543
No 261
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=68.25 E-value=24 Score=31.00 Aligned_cols=114 Identities=10% Similarity=-0.059 Sum_probs=81.1
Q ss_pred hhHHHHHHHHHhcCCCCchHHHH-----------------HHHHHHHHhccc-CChhhHHHHHHHHHhccc--hh-----
Q 040338 264 ISWMVLISAFSQAGVLEKPRFFF-----------------FFVSLLSGCSHS-GPVTKGKHYFTAMAKFTY--TC----- 318 (385)
Q Consensus 264 ~~~~~li~~~~~~g~~~~a~~~~-----------------~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~--~~----- 318 (385)
.+...|...|.+.|+.++..+++ ....+++.+... +..+.-.++..+..+... ..
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888899999998888888 677888888774 334444455444443322 12
Q ss_pred -hHHHHHHHHHccCCHHHHHHHHHhCCCC---CCc-----chHHHHHHHHHhcCChHHHHHHHHHHHh
Q 040338 319 -YFVCMVDLLGLSGLLGEAKKLIDEMPSK---PTC-----VIWGALLGACCSHYNTKLAELVMRNLLQ 377 (385)
Q Consensus 319 -~~~~li~~~~~~g~~~~A~~~~~~m~~~---p~~-----~~~~~li~~~~~~g~~~~a~~~~~~~~~ 377 (385)
.-.-++..|...|++.+|.+++.++.+. .|. ..|-.-++.|...++..++...+.....
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~ 167 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSART 167 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 2336889999999999999988887652 222 2455667788999999999999988754
No 262
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=66.52 E-value=35 Score=24.91 Aligned_cols=71 Identities=7% Similarity=-0.140 Sum_probs=41.5
Q ss_pred CCCchHHHhHHHHHHhcCC---hhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHH
Q 040338 84 VSDESIAKSSIDMHVKCGA---VDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETL 160 (385)
Q Consensus 84 ~~~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 160 (385)
.|+..+--.+..++.+..+ ..+++.+++.+.+.+. .......-.|.-++.+.|++++|.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~------------------~~~RdcLYyLAvg~ykl~~Y~~Ar 97 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAE------------------SRRRECLYYLTIGCYKLGEYSMAK 97 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCC------------------STHHHHHHHHHHHHHTTTCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCc------------------cchhHHHHHHHHHHHHhhhHHHHH
Confidence 5666666666677777654 3456666665543221 112223334455677777777777
Q ss_pred HHHHHHHHCCCCCC
Q 040338 161 CTFIELWNHGFGLS 174 (385)
Q Consensus 161 ~~~~~m~~~g~~p~ 174 (385)
+..+.+.+. .|+
T Consensus 98 ~y~d~lL~~--eP~ 109 (144)
T 1y8m_A 98 RYVDTLFEH--ERN 109 (144)
T ss_dssp HHHHHHHHT--CCC
T ss_pred HHHHHHHhc--CCC
Confidence 777777763 553
No 263
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=65.86 E-value=37 Score=24.94 Aligned_cols=61 Identities=7% Similarity=0.066 Sum_probs=44.5
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHhcCcc-CccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcC
Q 040338 163 FIELWNHGFGLSSMLYATAFSARASVY-DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG 224 (385)
Q Consensus 163 ~~~m~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 224 (385)
.+.|.+.|++++..=. .++..+...+ ..-.|.++++.+.+.++..+..|-..-++.+...|
T Consensus 5 ~~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 5 NQALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp HHHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 3456778888776544 3455566666 77889999999999888778777766677777766
No 264
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=65.79 E-value=14 Score=31.22 Aligned_cols=58 Identities=14% Similarity=0.200 Sum_probs=34.3
Q ss_pred HHHHHHHHhcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCC--HHHHHHHHHhCC
Q 040338 287 FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGL--LGEAKKLIDEMP 344 (385)
Q Consensus 287 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~--~~~A~~~~~~m~ 344 (385)
....++.-|...|+.++|.+.++++..... ..+...+..++-+.++ .+...+++..+.
T Consensus 168 ki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~ 229 (307)
T 2zu6_B 168 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLW 229 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHH
Confidence 666777777777888888888887764433 4444444445544332 334445555444
No 265
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=65.42 E-value=22 Score=23.88 Aligned_cols=27 Identities=15% Similarity=0.048 Sum_probs=14.5
Q ss_pred hhhHHHHHhhhCCCChhhHHHHHHHHH
Q 040338 34 IDDDYRVFCDIGPRYLFTYNTMINGGV 60 (385)
Q Consensus 34 ~~~A~~~~~~~~~~~~~~~~~li~~~~ 60 (385)
.+.|+++++.++.+++.+|..++.++.
T Consensus 53 ~~~ar~Lld~L~~rG~~Af~~F~~aL~ 79 (97)
T 3ygs_P 53 RDQARQLIIDLETRGSQALPLFISCLE 79 (97)
T ss_dssp HHHHHHHHHHHTTSCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcChHHHHHHHHHHH
Confidence 445555555555555555555555543
No 266
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=64.95 E-value=37 Score=24.72 Aligned_cols=61 Identities=8% Similarity=0.057 Sum_probs=43.8
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcC
Q 040338 163 FIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG 224 (385)
Q Consensus 163 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 224 (385)
.+.|.+.|++++..=. .++..+...+..-.|.++++.+.+.++..+..|-..-++.+...|
T Consensus 10 ~~~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 10 LETLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 3456778888765443 344444455677889999999998888778777777777777777
No 267
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=64.37 E-value=33 Score=24.63 Aligned_cols=59 Identities=8% Similarity=0.053 Sum_probs=41.8
Q ss_pred HHHHCCCCCCHhhHHHHHHHhcCcc-CccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcC
Q 040338 165 ELWNHGFGLSSMLYATAFSARASVY-DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG 224 (385)
Q Consensus 165 ~m~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 224 (385)
.|.+.|++++..=. .++..+...+ ..-.|.++++.+.+.++..+..|-..-++.+.+.|
T Consensus 8 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 8 ELRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 46677887765544 3444555555 67789999999988888777777767777777776
No 268
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=62.61 E-value=36 Score=25.03 Aligned_cols=62 Identities=6% Similarity=-0.056 Sum_probs=42.8
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcC
Q 040338 162 TFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG 224 (385)
Q Consensus 162 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 224 (385)
+-+.+.+.|++++..=. .++..+...+..-.|.++++.+.+.++..+..|--.-++.+...|
T Consensus 14 ~~~~l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 14 LRMSIKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 33456778887765433 345555556678899999999999888778877766777777776
No 269
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=62.16 E-value=34 Score=23.22 Aligned_cols=77 Identities=13% Similarity=-0.009 Sum_probs=53.9
Q ss_pred ChhhHHHHHHHHHhccc-hhhHHHHHHHHHccCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 040338 300 PVTKGKHYFTAMAKFTY-TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378 (385)
Q Consensus 300 ~~~~a~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 378 (385)
..++|..|-+.+...+. ..+--+-+..+...|++++|..+.+... -||...|-+|-. .+.|..+++...+.++...
T Consensus 21 ~HqEA~tIAdwL~~~~~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-~pdlepw~ALce--~rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQDEAARLIRISSLANQGRYQEALAFAHGNP-WPALEPWFALCE--WHLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTCHHHHHGGGTTCC-CGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHcchhHHHHHHhcCCCC-CchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 35666666666666655 2222334556888999999999998877 689988877753 5677778877777666554
Q ss_pred c
Q 040338 379 D 379 (385)
Q Consensus 379 ~ 379 (385)
|
T Consensus 98 g 98 (115)
T 2uwj_G 98 S 98 (115)
T ss_dssp S
T ss_pred C
Confidence 4
No 270
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=61.76 E-value=41 Score=28.74 Aligned_cols=27 Identities=15% Similarity=0.208 Sum_probs=21.1
Q ss_pred HHhHHHHHHhcCChhHHHHHHHhccCC
Q 040338 90 AKSSIDMHVKCGAVDYAESAFLRMLNP 116 (385)
Q Consensus 90 ~~~li~~~~~~g~~~~a~~~~~~m~~~ 116 (385)
...++.-|...|+.++|.+.++++..+
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p 40 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASP 40 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCc
Confidence 456788888889999999888887543
No 271
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=61.55 E-value=76 Score=27.06 Aligned_cols=167 Identities=8% Similarity=-0.058 Sum_probs=90.4
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccch----hhHHHHHHHhCCCCchHHHHHHH
Q 040338 142 SWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWG----PHLHSRVVHMEPSLDVFVGSGLI 217 (385)
Q Consensus 142 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a----~~~~~~~~~~~~~~~~~~~~~li 217 (385)
+|-++..-|.+.+++++|++++..--. .+.+.|+...| .-+++-+.+.++++|......|+
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 355566778888999998887755321 22233444333 33445566678888887777777
Q ss_pred HHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhc---ccCChhhHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Q 040338 218 DMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELM---SRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSG 294 (385)
Q Consensus 218 ~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~l~~~ 294 (385)
..+.... |+......+++. |+..=.+- +.-|......+...|.+.+++.+|..-| +
T Consensus 102 ~L~~~~~-----~~~p~r~~fi~~---------ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~-----i-- 160 (336)
T 3lpz_A 102 GCLRLFQ-----PGEPVRKRFVKE---------MIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL-----V-- 160 (336)
T ss_dssp HHHTTSC-----TTCHHHHHHHHH---------HHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH-----T--
T ss_pred HHHHhCC-----CCCcHHHHHHHH---------HHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH-----H--
Confidence 7776543 222222222221 11111111 1236667777888899999888886654 0
Q ss_pred hcccCChh-hHHHHHHHHHhccc---hhhHHHHHHHHHccCCHHHHHHHHHhCC
Q 040338 295 CSHSGPVT-KGKHYFTAMAKFTY---TCYFVCMVDLLGLSGLLGEAKKLIDEMP 344 (385)
Q Consensus 295 ~~~~~~~~-~a~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~ 344 (385)
++..+..+ -|.-+++...+.+. .....-.+--|...+++..|..+++...
T Consensus 161 lg~~~s~~~~a~mL~ew~~~~~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 161 LGTKESPEVLARMEYEWYKQDESHTAPLYCARAVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp TSCTTHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hcCCchHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 11111111 13334444444443 2222334445666888888888665443
No 272
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=61.36 E-value=44 Score=28.82 Aligned_cols=58 Identities=16% Similarity=0.202 Sum_probs=36.8
Q ss_pred HHHHHHHHhcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCC--HHHHHHHHHhCC
Q 040338 287 FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGL--LGEAKKLIDEMP 344 (385)
Q Consensus 287 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~--~~~A~~~~~~m~ 344 (385)
....++.=|...|+.++|.+.++++..... ..+..++..++-+.++ .+...+++..+.
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~ 280 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLW 280 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHH
Confidence 667778888888888888888888765433 4444455555555432 344556665554
No 273
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=61.31 E-value=36 Score=23.17 Aligned_cols=77 Identities=12% Similarity=-0.053 Sum_probs=53.4
Q ss_pred ChhhHHHHHHHHHhccc-hhhHHHHHHHHHccCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 040338 300 PVTKGKHYFTAMAKFTY-TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378 (385)
Q Consensus 300 ~~~~a~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 378 (385)
..++|..|-+.+...+. ..+--+-+..+...|++++|..+.+... -||...|-+|-. .+.|..+++...+.++...
T Consensus 22 ~HqEA~tIAdwL~~~~~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-~pdlepw~ALce--~rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGEEEAVQLIRLSSLMNRGDYASALQQGNKLA-YPDLEPWLALCE--YRLGLGSALESRLNRLARS 98 (116)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTSC-CGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHcchhHHHHHHhcCCCC-CchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 35666666666666655 2222334556888999999999998887 689988877754 4667777777777666544
Q ss_pred c
Q 040338 379 D 379 (385)
Q Consensus 379 ~ 379 (385)
|
T Consensus 99 g 99 (116)
T 2p58_C 99 Q 99 (116)
T ss_dssp C
T ss_pred C
Confidence 3
No 274
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=61.11 E-value=29 Score=22.14 Aligned_cols=61 Identities=10% Similarity=0.096 Sum_probs=44.8
Q ss_pred HHHHHCCCCCCHhhHHHHHHHhcCcc-CccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCC
Q 040338 164 IELWNHGFGLSSMLYATAFSARASVY-DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGC 225 (385)
Q Consensus 164 ~~m~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 225 (385)
+.|.+.|+.++..-. .++..+...+ ..-.+.++++.+.+.++..+..|-...++.+.+.|-
T Consensus 6 ~~l~~~g~~~t~~r~-~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 6 TALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCcCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 456778888776554 4556666665 677889999999888777777777777777777663
No 275
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=58.77 E-value=37 Score=22.49 Aligned_cols=47 Identities=13% Similarity=-0.002 Sum_probs=29.5
Q ss_pred HHHHHHHHcccchhhHHh-------hhhhHHHHHhhhCCCChhhHHHHHHHHHh
Q 040338 15 KIHAQLISTCLISSIFLQ-------LIDDDYRVFCDIGPRYLFTYNTMINGGVR 61 (385)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~-------~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 61 (385)
.+.+.+.+.++-...-.. ..+.|.++++.++..+...|..++.++..
T Consensus 26 ~lld~L~~~~vlt~~~~e~I~~~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~ 79 (94)
T 2p1h_A 26 YIMDHMISDGFLTISEEEKVRNEPTQQQRAAMLIKMILKKDNDSYVSFYNALLH 79 (94)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHTSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHcCCChHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 455566655533332222 67777777777777777777777777655
No 276
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=58.60 E-value=39 Score=25.00 Aligned_cols=62 Identities=8% Similarity=-0.137 Sum_probs=48.4
Q ss_pred cchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhcccCChhhHHHHHH
Q 040338 192 EWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLIS 271 (385)
Q Consensus 192 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~ 271 (385)
+++.++|..|...|+-.....+ |......+-..|++.+|.++|+.-.+.+......|..
T Consensus 82 ~dp~~if~~L~~~~IG~~~Alf---------------------Ye~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~ 140 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPL---------------------YIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFLQQ 140 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHH---------------------HHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHH---------------------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHH
Confidence 4589999999999886554433 6677777788899999999999988877777777766
Q ss_pred HHH
Q 040338 272 AFS 274 (385)
Q Consensus 272 ~~~ 274 (385)
.+.
T Consensus 141 ~~~ 143 (152)
T 4a1g_A 141 QYR 143 (152)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 277
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=58.45 E-value=47 Score=23.67 Aligned_cols=67 Identities=13% Similarity=0.164 Sum_probs=42.5
Q ss_pred HHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCC--chHHHHHHHHHH
Q 040338 90 AKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGF--GFETLCTFIELW 167 (385)
Q Consensus 90 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~m~ 167 (385)
.+.++.-|...|+.++|.+.++++..+.. ....+...+..++-+.+. .+.+..++..+.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-------------------~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~ 70 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHF-------------------HHELVYEAIVMVLESTGESAFKMILDLLKSLW 70 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGG-------------------HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCcc-------------------HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 45678888888999999998888753321 123344555556555432 355677777777
Q ss_pred HCCCCCCH
Q 040338 168 NHGFGLSS 175 (385)
Q Consensus 168 ~~g~~p~~ 175 (385)
..|+-+..
T Consensus 71 ~~~~is~~ 78 (129)
T 2nsz_A 71 KSSTITID 78 (129)
T ss_dssp HTTCSCHH
T ss_pred HCCCcCHH
Confidence 77654433
No 278
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=56.90 E-value=40 Score=26.31 Aligned_cols=58 Identities=12% Similarity=0.059 Sum_probs=41.5
Q ss_pred cCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC
Q 040338 100 CGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLS 174 (385)
Q Consensus 100 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 174 (385)
+++..++..+|..|...++- ..-..-|-.....+...|++.+|.++|+.-.+.+-.|-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG-----------------~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIG-----------------TKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSS-----------------TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHHCCCc-----------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 34466888888888766541 23445577777777888888888888888888777773
No 279
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=55.50 E-value=35 Score=24.89 Aligned_cols=60 Identities=10% Similarity=0.118 Sum_probs=39.6
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcC
Q 040338 163 FIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG 224 (385)
Q Consensus 163 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 224 (385)
-+.+.+.|++++..=. .++..+...+ .-.|.++++.+.+.++..+..|--.-++.+...|
T Consensus 7 ~~~L~~~g~r~T~qR~-~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 7 KSDLRQRGYRLTPQRQ-LVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHHHHTTTCCCCHHHH-HHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCcCHHHH-HHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 3456667877765432 3334444445 6788888988888887777776666666666666
No 280
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=54.94 E-value=31 Score=30.68 Aligned_cols=53 Identities=9% Similarity=-0.085 Sum_probs=34.8
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHhcccC------ChhhHHHHHHHHHhcCCCCchHHHH
Q 040338 234 IGKALVTMYAEGGSTQKADLAFELMSRR------NMISWMVLISAFSQAGVLEKPRFFF 286 (385)
Q Consensus 234 ~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~~~~~li~~~~~~g~~~~a~~~~ 286 (385)
+...+...|.+.|++++|.+.|.++.+. -+..+-.++..+...+++..+....
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~ 191 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKL 191 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 4567788888888888888888888752 2234445555555556555555444
No 281
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=54.89 E-value=73 Score=24.76 Aligned_cols=48 Identities=10% Similarity=-0.020 Sum_probs=36.7
Q ss_pred HHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCC
Q 040338 54 TMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGA 102 (385)
Q Consensus 54 ~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 102 (385)
-+|++|.+..+..+++.|+-.+..|.+.| .|....=..++-+.-.-|.
T Consensus 16 d~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGl 63 (204)
T 2r9g_A 16 DVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGL 63 (204)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccC
Confidence 48889998888899999999999999999 6555544444555544554
No 282
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=53.19 E-value=3.7 Score=28.92 Aligned_cols=67 Identities=6% Similarity=-0.145 Sum_probs=53.0
Q ss_pred HHhcCCCCchHHHH----HHHHHHHHhcccCChhhHHHHHHHHHhccchhhHHHHHHHHHccCCHHHHHHH
Q 040338 273 FSQAGVLEKPRFFF----FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKL 339 (385)
Q Consensus 273 ~~~~g~~~~a~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 339 (385)
|.+++++.+++++. .|--.|...+.+++.+-|..+++.....|....|.+.+-.+-..=++|-++++
T Consensus 16 ykkN~rw~qSI~L~KkDkLykDAietAa~S~d~elaEeLL~yFVe~g~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 16 PRGSHMWKQSVELAKKDSLYKDAMQYASESKDTELAEELLQWFLQEEKRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp SSSCCCCSSCCCCCSCCCCSSHHHHTTTSSCCSHHHHHHHHHHTTSCSHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred hhccccHHHHHHHHHhcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHHHhccChHHHHHH
Confidence 45566777777766 67777888899999999999999999988877777777777777777777665
No 283
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=52.78 E-value=42 Score=24.82 Aligned_cols=67 Identities=13% Similarity=0.164 Sum_probs=42.3
Q ss_pred HHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCC--chHHHHHHHHHH
Q 040338 90 AKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGF--GFETLCTFIELW 167 (385)
Q Consensus 90 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~m~ 167 (385)
.+.+|.-|...|+.++|.+.++++..+.. ....+..++..++-+.++ .+.+..++..+.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f-------------------~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~ 72 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHF-------------------HHELVYEAIVMVLESTGESAFKMILDLLKSLW 72 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGG-------------------HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcc-------------------hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 45678888888999999999888753321 123344555556555322 345677777777
Q ss_pred HCCCCCCH
Q 040338 168 NHGFGLSS 175 (385)
Q Consensus 168 ~~g~~p~~ 175 (385)
..|+-+..
T Consensus 73 ~~~~is~~ 80 (152)
T 2ion_A 73 KSSTITID 80 (152)
T ss_dssp HTTCSCHH
T ss_pred HCCCcCHH
Confidence 76654433
No 284
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=52.71 E-value=57 Score=24.30 Aligned_cols=67 Identities=7% Similarity=-0.044 Sum_probs=46.9
Q ss_pred hHHHHHHH-HHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHh--CCCCchHHHHHHHHHHHhcC
Q 040338 157 FETLCTFI-ELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHM--EPSLDVFVGSGLIDMYLKCG 224 (385)
Q Consensus 157 ~~a~~~~~-~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g 224 (385)
+.+++-+. .+.+.|++++..= ..++..+...+..-.|.++++.+.+. ++..+..|--.-++.+.+.|
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 44444443 4566788886543 35566777777888999999999988 77777776666666666666
No 285
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=52.49 E-value=81 Score=24.57 Aligned_cols=68 Identities=16% Similarity=0.062 Sum_probs=51.9
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-HhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchH
Q 040338 143 WNTMISILTRHGFGFETLCTFIELWNHGFGLS-SMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVF 211 (385)
Q Consensus 143 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 211 (385)
|-..+..+ ..+...+..++|..|...|+--. +.-|......+...|++.+|.++|+.-++.+-.|-..
T Consensus 83 Wl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~r 151 (202)
T 3esl_A 83 WIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNR 151 (202)
T ss_dssp HHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred HHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 43344433 24446799999999999987664 4566778888889999999999999999988777543
No 286
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=48.99 E-value=1.4e+02 Score=26.35 Aligned_cols=129 Identities=9% Similarity=-0.107 Sum_probs=81.7
Q ss_pred ChHHHHHHHHHHHHhcc-CC-CchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHH
Q 040338 67 NIKMALHLHGLVKKFYF-VS-DESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWN 144 (385)
Q Consensus 67 ~~~~a~~~~~~m~~~g~-~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 144 (385)
.+++..+......+... .. -..+...+...|.+.|+.+.|.+.|.++...-. ....-+..+-
T Consensus 109 ~l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~----------------~~~~kid~~l 172 (429)
T 4b4t_R 109 KIKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAI----------------STGAKIDVML 172 (429)
T ss_dssp CHHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHT----------------CCCSHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC----------------ChHHHHHHHH
Confidence 44555555555544322 22 234677899999999999999999998864321 0123355677
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHC---CCCCCHhhH--HHHHHHhcCccCccchhhHHHHHHHhCCCCchH
Q 040338 145 TMISILTRHGFGFETLCTFIELWNH---GFGLSSMLY--ATAFSARASVYDLEWGPHLHSRVVHMEPSLDVF 211 (385)
Q Consensus 145 ~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~t~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 211 (385)
..|..+...+++..+...+.+.... +-.|+...- ..-...+...+++..|-+.|-+....-...+..
T Consensus 173 ~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~~e~~ 244 (429)
T 4b4t_R 173 TIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFTSIELT 244 (429)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSCCSCHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCCccchh
Confidence 8889999999999999999887542 333333221 112223456688888888887776654333333
No 287
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=48.35 E-value=64 Score=25.38 Aligned_cols=46 Identities=11% Similarity=-0.025 Sum_probs=29.1
Q ss_pred hhhHHHHHHHHHhccc----------hhhHHHHHHHHHccCCHHHHHHHHHhCCCC
Q 040338 301 VTKGKHYFTAMAKFTY----------TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK 346 (385)
Q Consensus 301 ~~~a~~~~~~~~~~~~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 346 (385)
++.|..+|+.+.+... .-.-...+-.|.+.|.+++|.++|++...+
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 4566677777666553 111123455677788888888888877664
No 288
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=48.04 E-value=72 Score=23.91 Aligned_cols=61 Identities=13% Similarity=-0.032 Sum_probs=45.3
Q ss_pred cchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhcccCChhhHHHHHH
Q 040338 192 EWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLIS 271 (385)
Q Consensus 192 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~ 271 (385)
+...++|..|...|+-.....+ |......+-..|++.+|.++|..-.+.+......|-.
T Consensus 77 ~~p~~if~~L~~~~IG~~~Alf---------------------Y~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L~~ 135 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQF---------------------YISWAEEYEARENFRKADAIFQEGIQQKAEPLERLQS 135 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHH---------------------HHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHH---------------------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH
Confidence 5588899999999886554443 5666777778899999999999888766555555554
Q ss_pred HH
Q 040338 272 AF 273 (385)
Q Consensus 272 ~~ 273 (385)
.+
T Consensus 136 ~~ 137 (164)
T 2wvi_A 136 QH 137 (164)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 289
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=47.47 E-value=83 Score=23.23 Aligned_cols=44 Identities=11% Similarity=0.187 Sum_probs=36.6
Q ss_pred hhHHHHHHHHHhccc----hhhHHHHHHHHHccCCHHHHHHHHHhCCC
Q 040338 302 TKGKHYFTAMAKFTY----TCYFVCMVDLLGLSGLLGEAKKLIDEMPS 345 (385)
Q Consensus 302 ~~a~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 345 (385)
+....+|..|...++ ...|......+...|++.+|.++|+.-.+
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~ 129 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQ 129 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 347889999998888 77888888889999999999999876554
No 290
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=46.11 E-value=85 Score=25.14 Aligned_cols=66 Identities=15% Similarity=-0.068 Sum_probs=31.8
Q ss_pred HHHHHHHHHhccc-----hhhHHHHHHHHHccCCHHHHHHHHHhCCCC---CCcchHHHHHHHHHhcCChHHHHH
Q 040338 304 GKHYFTAMAKFTY-----TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK---PTCVIWGALLGACCSHYNTKLAEL 370 (385)
Q Consensus 304 a~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---p~~~~~~~li~~~~~~g~~~~a~~ 370 (385)
...+.+.+.+.|. ...-.+.+...++.|+.+-+..+++..... .|....+.+ ...++.|+.+-+.-
T Consensus 198 ~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l-~~A~~~~~~~i~~~ 271 (285)
T 1wdy_A 198 VEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTAL-LLAVELKLKKIAEL 271 (285)
T ss_dssp HHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHH-HHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHH-HHHHHcCcHHHHHH
Confidence 3455555555544 111122344556678888877777743332 222223333 33344566544333
No 291
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=44.70 E-value=84 Score=24.35 Aligned_cols=48 Identities=8% Similarity=-0.177 Sum_probs=36.6
Q ss_pred HHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcC
Q 040338 54 TMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCG 101 (385)
Q Consensus 54 ~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 101 (385)
-+|++|.+..+..+++.|+-.+..|++.|-.|....=..++-+.-.-|
T Consensus 9 d~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 9 DLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 378899988888999999999999999997765555444445544444
No 292
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=44.27 E-value=34 Score=20.01 Aligned_cols=38 Identities=8% Similarity=0.107 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHcccchhhHHh--------hhhhHHHHHhhhCCCC
Q 040338 11 PIARKIHAQLISTCLISSIFLQ--------LIDDDYRVFCDIGPRY 48 (385)
Q Consensus 11 ~~a~~~~~~~~~~~~~~~~~~~--------~~~~A~~~~~~~~~~~ 48 (385)
+.-++..+.++..|+.+..... .++.|...+.+|.-|+
T Consensus 7 ~vn~qmlq~L~eMGFd~erae~Alk~Tg~~Gle~AmewL~k~~~~~ 52 (54)
T 2cos_A 7 GVNRQMLQELVNAGCDQEMAGRALKQTGSRSIEAALEYISKMSGPS 52 (54)
T ss_dssp SCCHHHHHHHHHHHCCHHHHHHHHHHHTSCCHHHHHHHHHHHSCSC
T ss_pred hhHHHHHHHHHHcCCCHHHHHHHHHHhCcccHHHHHHHHHHhcCCC
Confidence 5556778889999988876554 6888888888887665
No 293
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=43.07 E-value=22 Score=30.48 Aligned_cols=23 Identities=17% Similarity=0.014 Sum_probs=14.3
Q ss_pred HHHHHHHHhCCCchHHHHHHHHH
Q 040338 144 NTMISILTRHGFGFETLCTFIEL 166 (385)
Q Consensus 144 ~~li~~~~~~~~~~~a~~~~~~m 166 (385)
+.++.-|...|+.++|...++++
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el 37 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQEL 37 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHc
Confidence 44556666666666666666665
No 294
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=42.54 E-value=1.5e+02 Score=24.89 Aligned_cols=166 Identities=8% Similarity=-0.057 Sum_probs=87.7
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhh----HHHHHHHhCCCCchHHHHHHH
Q 040338 142 SWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPH----LHSRVVHMEPSLDVFVGSGLI 217 (385)
Q Consensus 142 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~li 217 (385)
.|-++..-|.+.+++++|++++..-.. .+.+.|+...|-+ +.+-+.+.+.+++......++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 455667777788888888887755321 2223344444333 455555667777777777777
Q ss_pred HHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhc---ccCChhhHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Q 040338 218 DMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELM---SRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSG 294 (385)
Q Consensus 218 ~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~l~~~ 294 (385)
..+......+ |+...+ + .+|+..-.+. +..|......+...|.+.|++.+|..-|.
T Consensus 100 ~l~~~~p~~~--~~r~~f---i---------~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i------- 158 (312)
T 2wpv_A 100 RLIAELDPSE--PNLKDV---I---------TGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM------- 158 (312)
T ss_dssp HHHTTCCTTC--TTHHHH---H---------HHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH-------
T ss_pred HHHHHCCCCC--chHHHH---H---------HHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH-------
Confidence 6665543211 111111 1 1222222222 11366778888889999999988876551
Q ss_pred hcccCChhh-HHHHHHHHHhc--cc---hhh-HHHHHHHHHccCCHHHHHHHHHhC
Q 040338 295 CSHSGPVTK-GKHYFTAMAKF--TY---TCY-FVCMVDLLGLSGLLGEAKKLIDEM 343 (385)
Q Consensus 295 ~~~~~~~~~-a~~~~~~~~~~--~~---~~~-~~~li~~~~~~g~~~~A~~~~~~m 343 (385)
++...+.+. +.-+++...+. +. ... ..-.+-.|...|+...|..+|+..
T Consensus 159 ~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f 214 (312)
T 2wpv_A 159 LGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHESKDIF 214 (312)
T ss_dssp TSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHH
T ss_pred hCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 011001222 22233333331 32 222 222344456678888888887754
No 295
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=42.37 E-value=89 Score=24.79 Aligned_cols=44 Identities=11% Similarity=0.242 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHhccc----hhhHHHHHHHHHccCCHHHHHHHHHhCCC
Q 040338 302 TKGKHYFTAMAKFTY----TCYFVCMVDLLGLSGLLGEAKKLIDEMPS 345 (385)
Q Consensus 302 ~~a~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 345 (385)
+....+|..|...++ ...|......+...|++.+|.++|+.-.+
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~ 178 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKR 178 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467789999999888 88889999999999999999999976544
No 296
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=42.19 E-value=72 Score=25.32 Aligned_cols=62 Identities=15% Similarity=0.151 Sum_probs=46.0
Q ss_pred ccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhcccCChhhHHHHH
Q 040338 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLI 270 (385)
Q Consensus 191 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li 270 (385)
.+....+|..|...|+-.....| |......+-..|++.+|.++|+.-.+........|.
T Consensus 130 ~~~p~~if~~L~~~~IG~~~Alf---------------------Ye~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~ 188 (223)
T 4aez_C 130 IDEPVELFSFLAHHHIGQESSIF---------------------YEEYANYFESRGLFQKADEVYQKGKRMKAKPFLRFQ 188 (223)
T ss_dssp CSCHHHHHHHHHHTTCSTTBHHH---------------------HHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHHHH
T ss_pred cCCHHHHHHHHHHCCcchhHHHH---------------------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHH
Confidence 35888999999999886554443 667777778889999999999988775555555554
Q ss_pred HHH
Q 040338 271 SAF 273 (385)
Q Consensus 271 ~~~ 273 (385)
..|
T Consensus 189 ~~~ 191 (223)
T 4aez_C 189 QKY 191 (223)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 297
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=41.54 E-value=63 Score=23.30 Aligned_cols=45 Identities=13% Similarity=0.137 Sum_probs=27.6
Q ss_pred HHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcC
Q 040338 180 TAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG 224 (385)
Q Consensus 180 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 224 (385)
.++..+...+..-.|.++++.+.+.++..+..|--.-++.+.+.|
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 345555555556667777777766666666665555555555555
No 298
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=41.46 E-value=38 Score=26.20 Aligned_cols=22 Identities=14% Similarity=0.221 Sum_probs=13.8
Q ss_pred HHHHHHccCCHHHHHHHHHhCC
Q 040338 323 MVDLLGLSGLLGEAKKLIDEMP 344 (385)
Q Consensus 323 li~~~~~~g~~~~A~~~~~~m~ 344 (385)
.+..|.+.|.+++|.++|++..
T Consensus 123 AV~VCiekg~Fk~A~eiLkr~f 144 (211)
T 3bqo_A 123 AIAVCMENGNFKEAEEVFERIF 144 (211)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC
T ss_pred HHHHHHHccchHHHHHHHHHHh
Confidence 4445666677777777776643
No 299
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=40.63 E-value=1.2e+02 Score=23.70 Aligned_cols=50 Identities=8% Similarity=-0.076 Sum_probs=37.9
Q ss_pred HHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCC
Q 040338 53 NTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGA 102 (385)
Q Consensus 53 ~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 102 (385)
--+|++|.+..+..+++-|+-.+..|.+.|-.|....=..++-+.-.-|.
T Consensus 36 Yd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGl 85 (213)
T 3ctd_A 36 FDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGL 85 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 34889999888899999999999999999977655554445555544453
No 300
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=40.28 E-value=2.2e+02 Score=26.02 Aligned_cols=48 Identities=6% Similarity=0.050 Sum_probs=34.8
Q ss_pred HHHHHHHhc-CCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhcccCC
Q 040338 215 GLIDMYLKC-GCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRN 262 (385)
Q Consensus 215 ~li~~~~~~-g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 262 (385)
.|+.+|... .+.|...-...+|.+++.|...+.++.|..+.++..-|.
T Consensus 213 ~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~ 261 (523)
T 4b4t_S 213 TMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLEYPH 261 (523)
T ss_dssp HHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCT
T ss_pred HHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCc
Confidence 344444332 233445556788999999999999999999999987663
No 301
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=39.63 E-value=1.1e+02 Score=23.69 Aligned_cols=178 Identities=10% Similarity=-0.014 Sum_probs=0.0
Q ss_pred CcccccCCChHHHHHHHHHHHHcccchhhHHh-------------hhhhHHHHHhhhC---CCChhhHHHHHHHHHhhhc
Q 040338 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ-------------LIDDDYRVFCDIG---PRYLFTYNTMINGGVRCLC 64 (385)
Q Consensus 1 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------------~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~ 64 (385)
|...++.|+.+..+.+.+.+.+.+..++..-. +.+-+..+++.-. .++...++.+..+...
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~--- 89 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEH--- 89 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT---
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHc---
Q ss_pred cCChHHHHHHHHHHHHhccCCCchHHH--hHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcch
Q 040338 65 VGNIKMALHLHGLVKKFYFVSDESIAK--SSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVS 142 (385)
Q Consensus 65 ~~~~~~a~~~~~~m~~~g~~~~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 142 (385)
|+.+....+++.....++.++..... +.+...++.|+.+-+..+++.-...+ ..+...
T Consensus 90 -~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-------------------~~~~~~ 149 (241)
T 1k1a_A 90 -RSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADID-------------------AVDIKS 149 (241)
T ss_dssp -TCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-------------------CCCTTT
T ss_pred -CCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcc-------------------cccccC
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHH--HHHHHhcCccCccchhhHHHHHHHhCCCCc
Q 040338 143 WNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYA--TAFSARASVYDLEWGPHLHSRVVHMEPSLD 209 (385)
Q Consensus 143 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 209 (385)
-.+.+...++.|+ .++++.+.+.|..++..... +.+...+..|+ .++.+.+++.|..++
T Consensus 150 g~t~L~~A~~~~~----~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~ga~~~ 210 (241)
T 1k1a_A 150 GRSPLIHAVENNS----LSMVQLLLQHGANVNAQMYSGSSALHSASGRGL----LPLVRTLVRSGADSS 210 (241)
T ss_dssp CCCHHHHHHHTTC----HHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTC----HHHHHHHHHTTCCTT
T ss_pred CCcHHHHHHHcCC----HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCC----HHHHHHHHhcCCCCC
No 302
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=39.17 E-value=3e+02 Score=27.38 Aligned_cols=46 Identities=11% Similarity=-0.062 Sum_probs=24.8
Q ss_pred cchHHHHHHhcCCCC----CCcc--hHHHHHHHHHhCCCchHHHHHHHHHHH
Q 040338 123 FGIIRLLIMFQKMPE----RDLV--SWNTMISILTRHGFGFETLCTFIELWN 168 (385)
Q Consensus 123 ~~~~~a~~~~~~~~~----~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~ 168 (385)
|+.++++.++++-.. .+.. .=..+.-+....|..+++..++.....
T Consensus 388 g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~ 439 (963)
T 4ady_A 388 GNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIV 439 (963)
T ss_dssp SCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc
Confidence 555666776666433 1222 222233445566666677777776554
No 303
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=39.07 E-value=22 Score=21.39 Aligned_cols=24 Identities=13% Similarity=-0.027 Sum_probs=18.4
Q ss_pred CCCchHHHHHHHHHHHCC-CCCCHh
Q 040338 153 HGFGFETLCTFIELWNHG-FGLSSM 176 (385)
Q Consensus 153 ~~~~~~a~~~~~~m~~~g-~~p~~~ 176 (385)
.-+++.|...|.+++..| ++|+..
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eAF 57 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVAF 57 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHh
Confidence 457899999999998766 666543
No 304
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=38.83 E-value=1.1e+02 Score=22.38 Aligned_cols=54 Identities=7% Similarity=-0.075 Sum_probs=39.2
Q ss_pred hhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhH
Q 040338 49 LFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDY 105 (385)
Q Consensus 49 ~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 105 (385)
+..=..++..+.. .+..-.|.++++.+.+.+...+..|.---++.+.+.|-+.+
T Consensus 26 T~qR~~IL~~l~~---~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 79 (150)
T 2xig_A 26 SKQREEVVSVLYR---SGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFISV 79 (150)
T ss_dssp HHHHHHHHHHHHH---CSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHHHHHh---CCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEEE
Confidence 3334556666555 56778899999999888777777777777788888876543
No 305
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=38.60 E-value=80 Score=22.89 Aligned_cols=53 Identities=6% Similarity=-0.159 Sum_probs=38.2
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCcc
Q 040338 140 LVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLE 192 (385)
Q Consensus 140 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 192 (385)
+..-..++..+...+.+-.|.++++.+.+.+...+..|..-.++.+...|-+.
T Consensus 21 T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 21 TPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp CHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEE
Confidence 33445566777777778899999999988876667777666667776666543
No 306
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=37.97 E-value=1e+02 Score=22.96 Aligned_cols=67 Identities=7% Similarity=-0.014 Sum_probs=43.6
Q ss_pred hHHHHHhhhCCCChhhHHHHHHHHHhhhccCChHHHHHHHHHHHHh--ccCCCchHHHhHHHHHHhcCChhH
Q 040338 36 DDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKF--YFVSDESIAKSSIDMHVKCGAVDY 105 (385)
Q Consensus 36 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~ 105 (385)
++.+.+.+-..+-+..=..++..+.. .+..-.|.++++.+.+. +...+..|.---++.+.+.|-+.+
T Consensus 19 ~~~~~L~~~g~r~T~qR~~IL~~L~~---~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~ 87 (162)
T 4ets_A 19 RFKKILRQGGLKYTKQREVLLKTLYH---SDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTS 87 (162)
T ss_dssp HHHHHHHHHTCCCCHHHHHHHHHHHS---CCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHh---CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 34444444333333334556666555 56778899999999887 777777776667778888876544
No 307
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=37.60 E-value=1.1e+02 Score=23.83 Aligned_cols=17 Identities=29% Similarity=0.462 Sum_probs=8.9
Q ss_pred hhccCChHHHHHHHHHH
Q 040338 62 CLCVGNIKMALHLHGLV 78 (385)
Q Consensus 62 ~~~~~~~~~a~~~~~~m 78 (385)
|...|.+++|.+++++.
T Consensus 127 Ciekg~Fk~A~eiLkr~ 143 (211)
T 3bqo_A 127 CMENGNFKEAEEVFERI 143 (211)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHccchHHHHHHHHHH
Confidence 44455555555555553
No 308
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=37.49 E-value=70 Score=22.73 Aligned_cols=66 Identities=11% Similarity=-0.087 Sum_probs=43.8
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC---HhhHHHHHHHhcCcc--CccchhhHHHHHHHhCCCCchH
Q 040338 142 SWNTMISILTRHGFGFETLCTFIELWNHGFGLS---SMLYATAFSARASVY--DLEWGPHLHSRVVHMEPSLDVF 211 (385)
Q Consensus 142 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~ 211 (385)
..+.++.-|...|+.++|...++++. .|. ......+..++-+.+ ..+...+++..+.+.|+-+...
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~----~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q 79 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELE----VPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 79 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT----CGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhC----CCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 35678899999999999999999984 232 223344455555543 2356777777777777644443
No 309
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=37.20 E-value=1.3e+02 Score=22.57 Aligned_cols=49 Identities=12% Similarity=-0.032 Sum_probs=37.7
Q ss_pred cCChHHHHHHHHHHHHh-ccCCCc-------hHHHhHHHHHHhcCChhHHHHHHHhc
Q 040338 65 VGNIKMALHLHGLVKKF-YFVSDE-------SIAKSSIDMHVKCGAVDYAESAFLRM 113 (385)
Q Consensus 65 ~~~~~~a~~~~~~m~~~-g~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m 113 (385)
.+.++.|+-+.+.+... +..|+. .++..+.+++...|++..|...|++.
T Consensus 33 ~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 33 AGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 78999998888887664 234442 35667778999999999999999774
No 310
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=36.28 E-value=70 Score=22.68 Aligned_cols=47 Identities=13% Similarity=-0.062 Sum_probs=28.9
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCc
Q 040338 145 TMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDL 191 (385)
Q Consensus 145 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 191 (385)
.++..+...+.+-.|.++++.+.+.+...+..|..-.++.+...|-+
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 34555555666667777777777766555666655555566555543
No 311
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=35.49 E-value=69 Score=19.65 Aligned_cols=52 Identities=4% Similarity=-0.254 Sum_probs=40.4
Q ss_pred hHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHH
Q 040338 51 TYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYA 106 (385)
Q Consensus 51 ~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a 106 (385)
.++.++..++. ..-++.++..+++..+.| ..+..+|-.-.+.+++..-+..|
T Consensus 4 l~~Qll~l~Ae---d~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaReQF~~Ra 55 (65)
T 2f6m_A 4 GLNQLYNLVAQ---DYALTDTIEALSRMLHRG-TIPLDTFVKQGRELARQQFLVRW 55 (65)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 46778888766 778899999999999998 45888888888888776544443
No 312
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=34.84 E-value=3e+02 Score=26.05 Aligned_cols=84 Identities=11% Similarity=0.030 Sum_probs=49.7
Q ss_pred HHHhcccCChhhHHHHHHHHHhccc-hhhHHHHHH-HHHcc---------------CCHHHHHHHHHhCCCC--------
Q 040338 292 LSGCSHSGPVTKGKHYFTAMAKFTY-TCYFVCMVD-LLGLS---------------GLLGEAKKLIDEMPSK-------- 346 (385)
Q Consensus 292 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~li~-~~~~~---------------g~~~~A~~~~~~m~~~-------- 346 (385)
..-+...|.+++|..+|....+... ....+.++. +.... +-...|.++.+.....
T Consensus 450 A~~ae~~G~~~dAi~LY~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~~y~~~~~~~~~~~ 529 (661)
T 2qx5_A 450 ARRADEDGRIYDSILLYQLAEEYDIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARRMASIYFDNAGISRQIH 529 (661)
T ss_dssp HHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHHHHHTTCHHHHTTSC
T ss_pred HHHHHHCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHhcCchhhhhcc
Confidence 3455678888888888888766655 444443333 22221 1133566665554432
Q ss_pred -CCcchHHHHHHH-----HHhcCChHHHHHHHHHH
Q 040338 347 -PTCVIWGALLGA-----CCSHYNTKLAELVMRNL 375 (385)
Q Consensus 347 -p~~~~~~~li~~-----~~~~g~~~~a~~~~~~~ 375 (385)
.+..|+..|++. +...|+++.|++.++++
T Consensus 530 ~~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 530 VKNKEICMLLLNISSIRELYFNKQWQETLSQMELL 564 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 234456655443 37789999999888775
No 313
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=34.22 E-value=70 Score=22.70 Aligned_cols=45 Identities=9% Similarity=0.091 Sum_probs=35.0
Q ss_pred HHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcC
Q 040338 180 TAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG 224 (385)
Q Consensus 180 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 224 (385)
.++..+...+..-.|.++++.+.+.++..+..|-...++.+...|
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 355555556778899999999999988888877777777777777
No 314
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=33.98 E-value=61 Score=24.62 Aligned_cols=26 Identities=8% Similarity=-0.046 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHcCCChhHHHHHHHhc
Q 040338 233 QIGKALVTMYAEGGSTQKADLAFELM 258 (385)
Q Consensus 233 ~~~~~li~~~~~~g~~~~A~~~~~~m 258 (385)
..++.+...+...|+.++|+..|..-
T Consensus 115 fFy~l~a~lltq~g~r~EaI~y~~~S 140 (242)
T 3kae_A 115 FFESLLGDLCTLSGYREEGIGHYVRS 140 (242)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHhhhHhhhh
Confidence 34566667777788999999888643
No 315
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=33.80 E-value=2.4e+02 Score=24.68 Aligned_cols=29 Identities=10% Similarity=-0.096 Sum_probs=17.2
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHCC
Q 040338 142 SWNTMISILTRHGFGFETLCTFIELWNHG 170 (385)
Q Consensus 142 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g 170 (385)
--..++.+++...++....++++......
T Consensus 269 ek~~ll~aL~~s~d~~ll~~~L~~~l~~~ 297 (419)
T 3rjo_A 269 EKSQIEFALCRTQNKEKLQWLLDESFKGD 297 (419)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhCCC
Confidence 34456666666666666666666655443
No 316
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=33.61 E-value=2e+02 Score=28.50 Aligned_cols=92 Identities=10% Similarity=-0.116 Sum_probs=45.7
Q ss_pred HHHHHHHhhhccCChHHHHHHHHHHHHhc----cCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHH
Q 040338 54 TMINGGVRCLCVGNIKMALHLHGLVKKFY----FVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLL 129 (385)
Q Consensus 54 ~li~~~~~~~~~~~~~~a~~~~~~m~~~g----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~ 129 (385)
.++...|..+.....+.|.+.|+.....+ ++||. -..+...-.+.|..++-..++++..+.
T Consensus 691 ~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dl--r~~vy~~~~~~g~~~~~~~l~~~~~~~------------- 755 (909)
T 4fke_A 691 NAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNL--RSTIYCNAIAQGGQDQWDFAWGQLQQA------------- 755 (909)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTT--HHHHHHHHHHHSCHHHHHHHHHHHHHC-------------
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHH--HHHHHHHHHHhCCHHHHHHHHHHHHcc-------------
Confidence 34455555333444556667776665432 33332 233333334456555444444444321
Q ss_pred HHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHH
Q 040338 130 IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWN 168 (385)
Q Consensus 130 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 168 (385)
.+..--..++.+++...+.....++++....
T Consensus 756 --------~~~~ek~~ll~aL~~~~d~~~l~~~L~~~l~ 786 (909)
T 4fke_A 756 --------QLVNEADKLRSALACSNEVWLLNRYLGYTLN 786 (909)
T ss_dssp --------CSHHHHHHHHHHHTTCCCHHHHHHHHHHTTC
T ss_pred --------CCHHHHHHHHHHhCCCCCHHHHHHHHHHHhC
Confidence 2222344566666666666666666655543
No 317
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=33.01 E-value=62 Score=23.30 Aligned_cols=49 Identities=8% Similarity=-0.091 Sum_probs=36.9
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCcc
Q 040338 144 NTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLE 192 (385)
Q Consensus 144 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 192 (385)
..++..+...+.+-.|.++++.+.+.+...+..|.--.++.+...|-+.
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 65 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVD 65 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 4566777777778889999999998877777777666677777666543
No 318
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=32.69 E-value=45 Score=22.35 Aligned_cols=24 Identities=21% Similarity=0.151 Sum_probs=16.5
Q ss_pred CCCcchHHHHHHHHHhCCCchHHH
Q 040338 137 ERDLVSWNTMISILTRHGFGFETL 160 (385)
Q Consensus 137 ~~~~~~~~~li~~~~~~~~~~~a~ 160 (385)
......|..++.++...|+..-|.
T Consensus 65 ~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 65 TRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp TSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred HcChHHHHHHHHHHHHcCcHHHHH
Confidence 344468888898887777665443
No 319
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=32.19 E-value=2.7e+02 Score=24.74 Aligned_cols=137 Identities=10% Similarity=-0.031 Sum_probs=77.3
Q ss_pred hHHHHHHHHHHHHh--------ccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccc----cccchHHHHHHhcCC
Q 040338 68 IKMALHLHGLVKKF--------YFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFC----WKFGIIRLLIMFQKM 135 (385)
Q Consensus 68 ~~~a~~~~~~m~~~--------g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~----~~~~~~~a~~~~~~~ 135 (385)
.++...+++...+. ++..+......++.. -.|+..+++.+++.+....... ..=..+...+++.+.
T Consensus 167 ~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~~ 244 (447)
T 3pvs_A 167 TEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGER 244 (447)
T ss_dssp HHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhhh
Confidence 44555666655542 334555666666655 4688888888887763211000 001223334444443
Q ss_pred C---CCCcchHHHHHHHHH---hCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCcc-----chhhHHHHHHHh
Q 040338 136 P---ERDLVSWNTMISILT---RHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLE-----WGPHLHSRVVHM 204 (385)
Q Consensus 136 ~---~~~~~~~~~li~~~~---~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~-----~a~~~~~~~~~~ 204 (385)
. ..+...+-.+|+++. +.++++.|+.++.+|.+.|..|....-..+..+.-..|.-+ .|...++.....
T Consensus 245 ~~~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~ 324 (447)
T 3pvs_A 245 SARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRV 324 (447)
T ss_dssp CCC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHS
T ss_pred hhccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHh
Confidence 2 122223333555543 45789999999999999998887766667777766666532 344444444445
Q ss_pred CC
Q 040338 205 EP 206 (385)
Q Consensus 205 ~~ 206 (385)
|.
T Consensus 325 g~ 326 (447)
T 3pvs_A 325 GP 326 (447)
T ss_dssp CH
T ss_pred CC
Confidence 54
No 320
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=32.09 E-value=38 Score=22.43 Aligned_cols=61 Identities=13% Similarity=0.054 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHH
Q 040338 71 ALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISIL 150 (385)
Q Consensus 71 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~ 150 (385)
...+++.+.+.|+- +..-+..+-. .....+.|.++++.+.. .....|..++.++
T Consensus 24 v~~lld~L~~~~vl-t~~~~e~I~~---~~t~~~kar~Lld~l~~----------------------kG~~af~~F~~aL 77 (94)
T 2p1h_A 24 TSYIMDHMISDGFL-TISEEEKVRN---EPTQQQRAAMLIKMILK----------------------KDNDSYVSFYNAL 77 (94)
T ss_dssp HHHHHHHHHHHTSS-CHHHHHHHHT---SSSHHHHHHHHHHHHTT----------------------SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCC-CHHHHHHHHc---CCChHHHHHHHHHHHHH----------------------cCHHHHHHHHHHH
Confidence 34455666665543 3333333222 24455566666655543 4456788888888
Q ss_pred HhCCCch
Q 040338 151 TRHGFGF 157 (385)
Q Consensus 151 ~~~~~~~ 157 (385)
...+...
T Consensus 78 ~~~~~~~ 84 (94)
T 2p1h_A 78 LHEGYKD 84 (94)
T ss_dssp HHTTCHH
T ss_pred HHcCHHH
Confidence 8777543
No 321
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=31.82 E-value=61 Score=23.91 Aligned_cols=67 Identities=10% Similarity=-0.078 Sum_probs=44.1
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC---HhhHHHHHHHhcCcc--CccchhhHHHHHHHhCCCCchHH
Q 040338 142 SWNTMISILTRHGFGFETLCTFIELWNHGFGLS---SMLYATAFSARASVY--DLEWGPHLHSRVVHMEPSLDVFV 212 (385)
Q Consensus 142 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~ 212 (385)
..+.+|.-|...|+.++|...++++. .|. ......+..++-+.+ ..+.+..++..+...|+-+....
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~----~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~ 82 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELE----VPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 82 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT----CGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhC----CCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 45678899999999999999999984 232 223344455555532 24456777777777766444433
No 322
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=31.50 E-value=1.6e+02 Score=23.58 Aligned_cols=41 Identities=12% Similarity=-0.135 Sum_probs=23.0
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 040338 336 AKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLL 376 (385)
Q Consensus 336 A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 376 (385)
+..+.+++...++...-...+..+.+.|+.++|.++|=+..
T Consensus 78 ~~~L~~~l~~~~~~~~~r~~v~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 78 SSKLSQSILSSNEIVHLKSGTENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 33333333223444445556667777777777777765543
No 323
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=31.20 E-value=2.4e+02 Score=23.74 Aligned_cols=47 Identities=15% Similarity=0.088 Sum_probs=39.2
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCC
Q 040338 161 CTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPS 207 (385)
Q Consensus 161 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 207 (385)
+++..+.+.|+.|...++..++..+.+.=.++.+..+++.+...|..
T Consensus 209 ~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~ 255 (331)
T 3qye_A 209 DLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTE 255 (331)
T ss_dssp HHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcH
Confidence 45666777889998888888988888887888999999999888764
No 324
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=30.61 E-value=1e+02 Score=22.37 Aligned_cols=50 Identities=4% Similarity=-0.088 Sum_probs=36.0
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCcc
Q 040338 142 SWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLE 192 (385)
Q Consensus 142 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 192 (385)
.-..++..+...+ .-.|.++++.+.+.+...+..|.---++.+...|-+.
T Consensus 20 qR~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 69 (145)
T 3eyy_A 20 QRQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLVS 69 (145)
T ss_dssp HHHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEE
Confidence 3445666666666 7789999999998877777777666666776666543
No 325
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=30.59 E-value=1e+02 Score=19.70 Aligned_cols=38 Identities=11% Similarity=0.012 Sum_probs=25.1
Q ss_pred HHHhhhC--CCChhhHHHHHHHHHhhhccCChHHHHHHHHHHH
Q 040338 39 RVFCDIG--PRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVK 79 (385)
Q Consensus 39 ~~~~~~~--~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~ 79 (385)
.++++++ .|++.||+-+...+.+ ..-..++..+..++-
T Consensus 24 ~LL~kIPnLPpgVnTW~qI~el~qk---k~i~~~~m~iik~iy 63 (81)
T 2ko4_A 24 QLLQRIPNIPPNINTWQQVTALAQQ---KLLTPQDMEAAKEVY 63 (81)
T ss_dssp HHHTTSSSCCTTTCBHHHHHHHHTT---TSSCHHHHHHHHHHH
T ss_pred HHHhhCCCCCCCcchHHHHHHHHHc---CCCCHHHHHHHHHHH
Confidence 4667777 7889999988875443 444456666655554
No 326
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=30.12 E-value=2.3e+02 Score=28.26 Aligned_cols=65 Identities=6% Similarity=-0.167 Sum_probs=41.1
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCH-----------------------hhHHHHHHHhcCccCccchh
Q 040338 139 DLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSS-----------------------MLYATAFSARASVYDLEWGP 195 (385)
Q Consensus 139 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-----------------------~t~~~ll~~~~~~~~~~~a~ 195 (385)
+...--.+..+|...|++++|...|++.- .|+..+. .=|..++..+-+.+.++.+.
T Consensus 839 t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi 917 (950)
T 4gq2_M 839 DPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDAL 917 (950)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHH
Confidence 43333356678889999999999998753 2332110 12455666666677777777
Q ss_pred hHHHHHHHh
Q 040338 196 HLHSRVVHM 204 (385)
Q Consensus 196 ~~~~~~~~~ 204 (385)
++-+..++.
T Consensus 918 ~fA~lAI~~ 926 (950)
T 4gq2_M 918 EFSLLADAS 926 (950)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhh
Confidence 766666654
No 327
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=29.40 E-value=1.7e+02 Score=21.51 Aligned_cols=42 Identities=12% Similarity=0.125 Sum_probs=31.7
Q ss_pred HHHHHHHHhCCCC-CCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 040338 334 GEAKKLIDEMPSK-PTCVIWGALLGACCSHYNTKLAELVMRNL 375 (385)
Q Consensus 334 ~~A~~~~~~m~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 375 (385)
+++..+|+.+... ....+|.-++..+.+....-+.+..++.+
T Consensus 140 ~~~~~~f~~~D~d~dG~i~~~Ef~~~~~~~~~~~~~l~~~d~~ 182 (183)
T 1s6c_A 140 QHVDVFFQKMDKNKDGIVTLDEFLESXQEDDNIMRSLQLFQNV 182 (183)
T ss_dssp HHHHHHHHHHCTTCSSEECHHHHHHHTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcEeHHHHHHHHhcChHHHHHHHHhhcc
Confidence 6788888888654 45678999998888877777777777654
No 328
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=29.25 E-value=1.6e+02 Score=22.64 Aligned_cols=45 Identities=7% Similarity=-0.030 Sum_probs=26.9
Q ss_pred cCChHHHHHHHHHHHHhccCCCch--HHHhHHHHHHhcCChhHHHHHHHhc
Q 040338 65 VGNIKMALHLHGLVKKFYFVSDES--IAKSSIDMHVKCGAVDYAESAFLRM 113 (385)
Q Consensus 65 ~~~~~~a~~~~~~m~~~g~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m 113 (385)
.|+++....+ .+.|..++.. .-.+.+...++.|+.+-+..+++.-
T Consensus 19 ~g~~~~~~~L----l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~ 65 (240)
T 3eu9_A 19 YGIYERCREL----VEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKG 65 (240)
T ss_dssp TTCHHHHHHH----HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred cCChHHHHHH----HHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 5776655444 4456554432 2234666777888887777776543
No 329
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=28.71 E-value=1.6e+02 Score=25.05 Aligned_cols=83 Identities=11% Similarity=-0.014 Sum_probs=55.5
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchH-HHH--HHHHHHHhcCCCCCCchhhHHHH
Q 040338 161 CTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVF-VGS--GLIDMYLKCGCNGIESSIQIGKA 237 (385)
Q Consensus 161 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~--~li~~~~~~g~~~~~~~~~~~~~ 237 (385)
++++.+.+.|+.|...++..++..+.+.=.++.+..+++.+...|...... .|- +++..+. .
T Consensus 230 ~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~--------------~- 294 (345)
T 2qfz_A 230 QVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWR--------------K- 294 (345)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTTTTTHHHHHHHHHHHHTH--------------H-
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHH--------------H-
Confidence 355566677899888888888888888888899999999998887544322 221 1111110 1
Q ss_pred HHHHHHcCCChhHHHHHHHhcccC
Q 040338 238 LVTMYAEGGSTQKADLAFELMSRR 261 (385)
Q Consensus 238 li~~~~~~g~~~~A~~~~~~m~~~ 261 (385)
......++++...++..+...
T Consensus 295 ---~ll~~~d~~~il~~L~~~p~~ 315 (345)
T 2qfz_A 295 ---EILEEKDFQELLLFLQNLPTA 315 (345)
T ss_dssp ---HHHHCCCHHHHHHHHTSCSCT
T ss_pred ---HHHhhCCHHHHHHHHHcCCCc
Confidence 122346888888888877654
No 330
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=28.46 E-value=62 Score=19.40 Aligned_cols=33 Identities=12% Similarity=-0.227 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHhccCCCchHHHhHHHHH-Hhc
Q 040338 68 IKMALHLHGLVKKFYFVSDESIAKSSIDMH-VKC 100 (385)
Q Consensus 68 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~-~~~ 100 (385)
.++|.+.|-+|++..--++..+|...|+.+ ++.
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i~i~D 35 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISELGTRD 35 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCC
Confidence 367888888888775455778888888888 553
No 331
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=28.08 E-value=2.3e+02 Score=22.60 Aligned_cols=98 Identities=15% Similarity=0.076 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHHHcccchhhHHh--hhhhHHHHHhhhC-------CC---ChhhHHHHHHHHHhhhccCChHHHHHHHHH
Q 040338 10 LPIARKIHAQLISTCLISSIFLQ--LIDDDYRVFCDIG-------PR---YLFTYNTMINGGVRCLCVGNIKMALHLHGL 77 (385)
Q Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~~~-------~~---~~~~~~~li~~~~~~~~~~~~~~a~~~~~~ 77 (385)
.+...+-..++....=..|+.+. ++++|..+.++.. .+ +...-...|..-.. .+.-.-+..+.++
T Consensus 8 ~~~~~~~~~wl~~~~deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~---eR~~~L~~~L~~~ 84 (235)
T 2d2s_A 8 MSSTAQRLKFLDEGVEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIE---QRREAISSKLSQS 84 (235)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred CcccchhHHHHHcccHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 33344444444443323333333 7888877777543 21 11222223333222 3444555555555
Q ss_pred HHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhc
Q 040338 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRM 113 (385)
Q Consensus 78 m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 113 (385)
+.. .++.......+..+.+.|+.++|.++|-+.
T Consensus 85 l~~---~~~~~~~r~~v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 85 ILS---SNEIVHLKSGTENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHT---CSSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHh---cCCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 532 556667778889999999999999998554
No 332
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=27.92 E-value=2.1e+02 Score=22.19 Aligned_cols=64 Identities=13% Similarity=-0.043 Sum_probs=45.0
Q ss_pred HHHHHHHHH---hCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCc-----cchhhHHHHHHHhCCC
Q 040338 143 WNTMISILT---RHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDL-----EWGPHLHSRVVHMEPS 207 (385)
Q Consensus 143 ~~~li~~~~---~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~-----~~a~~~~~~~~~~~~~ 207 (385)
+--+|+++. |-.+++.|+-++-+|.+.| .|.-..-..++.+.-..|.- ..|...++.....|.+
T Consensus 14 HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 14 HYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 334556654 4578999999999999999 77776767777777777653 3445555666666653
No 333
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=27.17 E-value=3.3e+02 Score=24.16 Aligned_cols=96 Identities=5% Similarity=-0.192 Sum_probs=54.7
Q ss_pred CCChHHHHHHHHHHHHcccch--hhHHhhhhhHHHHHhhhC---CCChhhHHHHHHHHHhhhccCChHHHHHHHHHHHHh
Q 040338 7 LKSLPIARKIHAQLISTCLIS--SIFLQLIDDDYRVFCDIG---PRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKF 81 (385)
Q Consensus 7 ~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~ 81 (385)
.|+...+..+.+.+....... ....-..+....++.... ..+...+-.+|+++.+..+..+.+.|+.++..|.+.
T Consensus 205 ~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~~~~~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~ 284 (447)
T 3pvs_A 205 NGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITA 284 (447)
T ss_dssp CSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTCCCCC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 477777777777776654211 000013344444444332 112222334677777666678999999999999999
Q ss_pred ccCCCchHHHhHHHHHHhcCC
Q 040338 82 YFVSDESIAKSSIDMHVKCGA 102 (385)
Q Consensus 82 g~~~~~~~~~~li~~~~~~g~ 102 (385)
|..|....-..++.+.-.-|.
T Consensus 285 Gedp~~i~rrl~~~a~edig~ 305 (447)
T 3pvs_A 285 GGDPLYVARRCLAIASEDVGN 305 (447)
T ss_dssp TCCHHHHHHHHHHHHHHTTGG
T ss_pred CCCHHHHHHHHHHHHHhcccC
Confidence 877655544444444444443
No 334
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=26.85 E-value=1.6e+02 Score=20.91 Aligned_cols=52 Identities=6% Similarity=-0.015 Sum_probs=37.2
Q ss_pred chHHHHHHHHHhCC-CchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCcc
Q 040338 141 VSWNTMISILTRHG-FGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLE 192 (385)
Q Consensus 141 ~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 192 (385)
..-..++..+...+ .+-.|.++++.+.+.+...+..|..--++.+...|-+.
T Consensus 18 ~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 18 LPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 34455677777776 78899999999999877777777666666766666543
No 335
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=26.81 E-value=2.1e+02 Score=24.61 Aligned_cols=24 Identities=13% Similarity=0.137 Sum_probs=13.2
Q ss_pred HhHHHHHHhcCChhHHHHHHHhcc
Q 040338 91 KSSIDMHVKCGAVDYAESAFLRML 114 (385)
Q Consensus 91 ~~li~~~~~~g~~~~a~~~~~~m~ 114 (385)
+.++.-|...|+.++|.+.++++.
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~ 244 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELE 244 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHHhccCCCHHHHHHHHHHcc
Confidence 445555555555555555555554
No 336
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=26.30 E-value=4.9e+02 Score=25.87 Aligned_cols=123 Identities=11% Similarity=-0.014 Sum_probs=68.9
Q ss_pred HHHHHHcCCChhHHHHHHHhcccCChhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHhc---ccCCh-hhHHHHHHHHHh
Q 040338 238 LVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCS---HSGPV-TKGKHYFTAMAK 313 (385)
Q Consensus 238 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~l~~~~~---~~~~~-~~a~~~~~~~~~ 313 (385)
++..+...|..+-|.++..-+.. +...--.+..+|...|++++|.+.|--.+ .+.. ..... +....++.....
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA--~gl~~~~~~~~~~~~~~~ll~~~e~ 892 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS--LVLYSHTSQFAVLREFQEIAEKYHH 892 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCC--CTTCSSCCSCGGGHHHHHHHHHTTT
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh--hhcccCcccccchhhhhhccCcccc
Confidence 56666777777777665555543 44333456777888888888877760000 0000 00111 112222222111
Q ss_pred ccc-hhhHHHHHHHHHccCCHHHHHHHHHhCCCC---CC----cchHHHHHHHHHhcC
Q 040338 314 FTY-TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK---PT----CVIWGALLGACCSHY 363 (385)
Q Consensus 314 ~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---p~----~~~~~~li~~~~~~g 363 (385)
... ...|..++..+-+.+.++.+.++-+-..+. .| ...|..+.++.+..|
T Consensus 893 ~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 893 QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 111 557888999999999999887776544321 12 235777777777654
No 337
>3kat_A Nacht, LRR and PYD domains-containing protein 1; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 3.10A {Homo sapiens}
Probab=25.45 E-value=1.5e+02 Score=20.31 Aligned_cols=40 Identities=5% Similarity=-0.090 Sum_probs=25.5
Q ss_pred hhhhHHHHHhhhCCCChhhHHHHHHHHHhhhccCChHHHHHHHH
Q 040338 33 LIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHG 76 (385)
Q Consensus 33 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~ 76 (385)
..++++++|+.++..+...++.++.++.. .+...+.++++
T Consensus 62 ~q~k~R~Lld~v~~kG~~A~~~F~~~L~e----~dp~L~~~L~~ 101 (107)
T 3kat_A 62 RPSQMRKLFSLSQSWDRKCKDGLYQALKE----THPHLIMELWE 101 (107)
T ss_dssp HHHHHHHHHHGGGGCCTTHHHHHHHHHHH----HCHHHHHHHHH
T ss_pred CHHHHHHHHHHhhcCCHHHHHHHHHHHHH----cCHHHHHHHHh
Confidence 66777777777777777777777776544 44444444443
No 338
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=25.02 E-value=2e+02 Score=24.06 Aligned_cols=64 Identities=16% Similarity=0.187 Sum_probs=34.3
Q ss_pred HhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCC--chHHHHHHHHHHH
Q 040338 91 KSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGF--GFETLCTFIELWN 168 (385)
Q Consensus 91 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~ 168 (385)
+.++.-|...|+.++|.+.++++..+.. ....++.++..++-+.++ .+.+..++..+.+
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~~p~f-------------------~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~ 230 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELEVPHF-------------------HHELVYEAIIMVLESTGESTFKMILDLLKSLWK 230 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCGGG-------------------HHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCcc-------------------hHHHHHHHHHHHHccCChHHHHHHHHHHHHHHH
Confidence 4566666667777777777776653221 112334444444444322 3345566666666
Q ss_pred CCCCC
Q 040338 169 HGFGL 173 (385)
Q Consensus 169 ~g~~p 173 (385)
.|+-+
T Consensus 231 ~~~ls 235 (307)
T 2zu6_B 231 SSTIT 235 (307)
T ss_dssp HCSSC
T ss_pred CCCCC
Confidence 55443
No 339
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=24.69 E-value=3.2e+02 Score=23.15 Aligned_cols=85 Identities=11% Similarity=0.141 Sum_probs=51.7
Q ss_pred HHHhcccCChhhHHHHHHHHHhccc----hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-----CCcchHHHHHHHHHhc
Q 040338 292 LSGCSHSGPVTKGKHYFTAMAKFTY----TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-----PTCVIWGALLGACCSH 362 (385)
Q Consensus 292 ~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----p~~~~~~~li~~~~~~ 362 (385)
+..+.+....+.-..+++++...-. ...-|-++..+...+..+.-..+++.+... -+... +.++..|...
T Consensus 185 vq~~le~~~~~~~~~ii~~l~~~~~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~l~~~~~~Ls~~k~g-s~Vvek~l~~ 263 (351)
T 3gvo_A 185 IQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFA-SNVVEKCVTH 263 (351)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHTTTTCHHHHHTSTTH-HHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHhhhHHhcCCCchHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHhcCcHH-HHHHHHHHHh
Confidence 3333343444555556666554333 444566778888888888888888888764 22222 2455555666
Q ss_pred CChHHHHHHHHHHHh
Q 040338 363 YNTKLAELVMRNLLQ 377 (385)
Q Consensus 363 g~~~~a~~~~~~~~~ 377 (385)
+..+.-..+++++..
T Consensus 264 ~~~~~r~~ii~el~~ 278 (351)
T 3gvo_A 264 ASRAERALLIDEVCC 278 (351)
T ss_dssp SCHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHhc
Confidence 666666677777765
No 340
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=24.15 E-value=2.6e+02 Score=21.94 Aligned_cols=51 Identities=4% Similarity=-0.230 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCC
Q 040338 157 FETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSL 208 (385)
Q Consensus 157 ~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 208 (385)
+.+..+++.+.+.|.--|..--...++...+.+. .....+-.++.+.|+.+
T Consensus 93 e~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~~~~-~G~~~I~~eL~~KGI~~ 143 (221)
T 3d5l_A 93 EFVEPILKKLRGQQLIDDHAYAASYVRTMINTDL-KGPGIIRQHLRQKGIGE 143 (221)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHcCCCH
Confidence 4455666666666655333333344444433111 23455666666666643
No 341
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=23.98 E-value=2.5e+02 Score=21.71 Aligned_cols=62 Identities=13% Similarity=0.000 Sum_probs=43.5
Q ss_pred HHHHHHH---hCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCcc-----chhhHHHHHHHhCC
Q 040338 145 TMISILT---RHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLE-----WGPHLHSRVVHMEP 206 (385)
Q Consensus 145 ~li~~~~---~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~-----~a~~~~~~~~~~~~ 206 (385)
-+|+++. |-.+++.|+-++-+|.+.|-.|.-..-..++.+.-..|.-+ .|...++.....|.
T Consensus 9 d~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 78 (201)
T 3bge_A 9 DLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGA 78 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHCC
Confidence 3555554 45789999999999999998887777777777777766533 33444455555554
No 342
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=23.55 E-value=2.7e+02 Score=21.83 Aligned_cols=66 Identities=12% Similarity=-0.057 Sum_probs=46.8
Q ss_pred hHHHHHHHHH---hCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCcc-----chhhHHHHHHHhCCC
Q 040338 142 SWNTMISILT---RHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLE-----WGPHLHSRVVHMEPS 207 (385)
Q Consensus 142 ~~~~li~~~~---~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~-----~a~~~~~~~~~~~~~ 207 (385)
.+--+|+++. |-.+++.|+-++-+|.+.|-.|.-..-..++.+.-..|.-+ .|...++.....|.+
T Consensus 34 ~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 34 NHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 3344666664 45789999999999999998888777777887777766532 344555555566653
No 343
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=23.50 E-value=1.3e+02 Score=21.91 Aligned_cols=51 Identities=6% Similarity=-0.018 Sum_probs=37.1
Q ss_pred hHHHHHHHHHhCC-CchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCcc
Q 040338 142 SWNTMISILTRHG-FGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLE 192 (385)
Q Consensus 142 ~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 192 (385)
.-..++..+...+ .+-.|.++++.+.+.+...+..|..--+..+...|-+.
T Consensus 18 qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 18 PRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 3445666666666 77889999999998877777777666667777666554
No 344
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=23.41 E-value=1.3e+02 Score=18.00 Aligned_cols=22 Identities=9% Similarity=-0.198 Sum_probs=12.1
Q ss_pred cCChHHHHHHHHHHHhccccCC
Q 040338 362 HYNTKLAELVMRNLLQLDVKVF 383 (385)
Q Consensus 362 ~g~~~~a~~~~~~~~~~~~~~~ 383 (385)
.|+.+.|+..+-+|..-+..|.
T Consensus 36 ~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 36 RGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp TTCHHHHHHHHHHSSCCCCSCC
T ss_pred CCCHHHHHHHHHcCcCCCCCCC
Confidence 4556666666665555444443
No 345
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=23.31 E-value=62 Score=22.71 Aligned_cols=43 Identities=2% Similarity=-0.105 Sum_probs=31.6
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHh
Q 040338 162 TFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHM 204 (385)
Q Consensus 162 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 204 (385)
+|+.+.+..+.|+...--.-+..+...++++.|.+++-.+...
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 5556666668777665555566677889999999999888764
No 346
>2bn5_A PSI; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster} PDB: 2bn6_A
Probab=23.30 E-value=86 Score=16.05 Aligned_cols=24 Identities=17% Similarity=0.119 Sum_probs=18.9
Q ss_pred hHHHHHHhcCChhHHHHHHHhccC
Q 040338 92 SSIDMHVKCGAVDYAESAFLRMLN 115 (385)
Q Consensus 92 ~li~~~~~~g~~~~a~~~~~~m~~ 115 (385)
..+..|.+.|+.++|..+-.+|+.
T Consensus 7 QW~eYYrsiG~~~eAeaIe~q~k~ 30 (33)
T 2bn5_A 7 QWAEYYRSVGKIEEAEAIEKTLKN 30 (33)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHTC
T ss_pred HHHHHHHHcccHHHHHHHHHHHHh
Confidence 356778888999999988877763
No 347
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=23.02 E-value=2.1e+02 Score=21.50 Aligned_cols=66 Identities=12% Similarity=0.032 Sum_probs=38.3
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhh---HHHHHHHhcC-ccCccchhhHHHHHHHhCCCCch
Q 040338 145 TMISILTRHGFGFETLCTFIELWNHGFGLSSML---YATAFSARAS-VYDLEWGPHLHSRVVHMEPSLDV 210 (385)
Q Consensus 145 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t---~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~ 210 (385)
+.+...+..|+.+.-.++.+.+.+.|..|+... .+.|..++.. ..+.....++.+.+++.|..++.
T Consensus 40 T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~ 109 (186)
T 3t8k_A 40 NILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITA 109 (186)
T ss_dssp THHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSS
T ss_pred CHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCc
Confidence 345555667777777788888888888776532 2223222221 12223345667777777765543
No 348
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=22.73 E-value=2.9e+02 Score=21.91 Aligned_cols=43 Identities=16% Similarity=0.270 Sum_probs=34.7
Q ss_pred HHHHHHHHHhCCCC-CCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 040338 333 LGEAKKLIDEMPSK-PTCVIWGALLGACCSHYNTKLAELVMRNL 375 (385)
Q Consensus 333 ~~~A~~~~~~m~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 375 (385)
-+++..+|+.+... ....+|.-++..+.+....-+++..++.+
T Consensus 212 ~~~~~~~f~~~D~d~dG~Is~~Ef~~~~~~~~~l~~~l~~~d~~ 255 (256)
T 2jul_A 212 LEHVERFFQKMDRNQDGVVTIDEFLETCQKDENIMNSMQLFENV 255 (256)
T ss_dssp HHHHHHHHHHSCCSTTCSBCHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCcEeHHHHHHHHHhCHHHHHHHHhhccc
Confidence 46788888888764 45679999999999988888888887765
No 349
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=22.53 E-value=2.4e+02 Score=20.96 Aligned_cols=49 Identities=14% Similarity=0.091 Sum_probs=33.3
Q ss_pred ccCCHHHHHHHHHhCCCC---C--CcchHHHHHH-H-----HHhcCChHHHHHHHHHHHh
Q 040338 329 LSGLLGEAKKLIDEMPSK---P--TCVIWGALLG-A-----CCSHYNTKLAELVMRNLLQ 377 (385)
Q Consensus 329 ~~g~~~~A~~~~~~m~~~---p--~~~~~~~li~-~-----~~~~g~~~~a~~~~~~~~~ 377 (385)
..|++-+|-+++++.=.. + +...|..||+ . ..+.|+...|..++++...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 348888888888877553 3 3345666766 2 2346888888888887754
No 350
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=22.32 E-value=2.5e+02 Score=20.98 Aligned_cols=43 Identities=5% Similarity=0.097 Sum_probs=31.3
Q ss_pred hHHHHHHHHHhccc----hhhHHHHHHHHHccCCHHHHHHHHHhCCC
Q 040338 303 KGKHYFTAMAKFTY----TCYFVCMVDLLGLSGLLGEAKKLIDEMPS 345 (385)
Q Consensus 303 ~a~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 345 (385)
....+|..|...++ ...|......+-..|++.+|.++|+.-.+
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~ 124 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQ 124 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 36677777777777 66777777777778888888888765544
No 351
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=20.93 E-value=2.8e+02 Score=21.10 Aligned_cols=117 Identities=6% Similarity=-0.065 Sum_probs=67.1
Q ss_pred HHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHH-HHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCC
Q 040338 57 NGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSID-MHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKM 135 (385)
Q Consensus 57 ~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~-~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~ 135 (385)
.-.++|-+-.+.+.+.-+-..+. |+..-|..|+. .+--.|....++-++..
T Consensus 7 ~kI~Ks~kY~dYdt~~fLsa~L~-----~~~~eY~lL~~I~LyyngEY~R~Lf~L~~----------------------- 58 (242)
T 3kae_A 7 GKICKSIRYRDYETAIFLAACLL-----PCKPEYRMLMSIVLYLNGEYTRALFHLHK----------------------- 58 (242)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHC---------CTHHHHHHHHHHTTCHHHHHHHHHT-----------------------
T ss_pred HHHHHHhhcccccHHHHHHHHHc-----cCChHHHhhhhhhhhhcchHhHHHHHHHh-----------------------
Confidence 33444444566766655443332 33334555553 23347888888777632
Q ss_pred CCCCcch---HHHHHHHHHhCCCchHHHHHHHHHHHCCCC--C--------------C-HhhHHHHHHHhcCccCccchh
Q 040338 136 PERDLVS---WNTMISILTRHGFGFETLCTFIELWNHGFG--L--------------S-SMLYATAFSARASVYDLEWGP 195 (385)
Q Consensus 136 ~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p--------------~-~~t~~~ll~~~~~~~~~~~a~ 195 (385)
.|+.| |..| +|-+..++..|+..++.+....+. | | ...|+.+...|...|+.++|+
T Consensus 59 --lNT~Ts~YYk~L--Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI 134 (242)
T 3kae_A 59 --LNTCTSKYYESL--CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGI 134 (242)
T ss_dssp --CCBHHHHHHHHH--HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHH
T ss_pred --cchHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhh
Confidence 22222 2222 456778888888888888755443 1 2 233566667777888888888
Q ss_pred hHHHHHHHhC
Q 040338 196 HLHSRVVHME 205 (385)
Q Consensus 196 ~~~~~~~~~~ 205 (385)
..+..--...
T Consensus 135 ~y~~~Sf~~~ 144 (242)
T 3kae_A 135 GHYVRSFGKS 144 (242)
T ss_dssp HHHHHHHHHC
T ss_pred hHhhhhcCCc
Confidence 8776654443
No 352
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=20.24 E-value=2.1e+02 Score=19.26 Aligned_cols=55 Identities=9% Similarity=-0.020 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHH-----HhCCCCchHHHH
Q 040338 158 ETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVV-----HMEPSLDVFVGS 214 (385)
Q Consensus 158 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~~ 214 (385)
.+.++.++...-|+.|+..+..-++..|..-+. + +.++.++.. ..|..|+....+
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~ 86 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILN 86 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHH
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHH
Confidence 466777788888999988888888887776664 2 544444332 235555554443
Done!