Query 040341
Match_columns 251
No_of_seqs 177 out of 1159
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 07:30:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040341.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040341hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2670 Enolase [Carbohydrate 100.0 1.8E-95 4E-100 652.8 22.3 243 1-247 191-433 (433)
2 PF00113 Enolase_C: Enolase, C 100.0 8.2E-93 1.8E-97 642.9 19.6 247 1-247 49-295 (295)
3 COG0148 Eno Enolase [Carbohydr 100.0 8.3E-86 1.8E-90 604.6 22.6 233 1-245 186-420 (423)
4 PTZ00081 enolase; Provisional 100.0 3E-74 6.5E-79 546.9 24.5 242 1-242 197-438 (439)
5 PTZ00378 hypothetical protein; 100.0 1.3E-73 2.9E-78 542.8 23.0 220 14-241 242-486 (518)
6 PLN00191 enolase 100.0 9.1E-71 2E-75 525.0 24.0 244 1-247 212-455 (457)
7 PRK00077 eno enolase; Provisio 100.0 8E-63 1.7E-67 468.5 23.4 234 1-246 187-423 (425)
8 cd03313 enolase Enolase: Enola 100.0 8.1E-63 1.8E-67 466.3 21.5 225 1-232 182-408 (408)
9 TIGR01060 eno phosphopyruvate 100.0 1.5E-61 3.3E-66 459.7 23.3 237 1-245 184-423 (425)
10 PRK08350 hypothetical protein; 100.0 4.9E-62 1.1E-66 443.4 18.1 177 1-238 157-335 (341)
11 TIGR01502 B_methylAsp_ase meth 99.8 1.2E-19 2.6E-24 171.8 19.7 195 28-233 176-405 (408)
12 TIGR01928 menC_lowGC/arch o-su 99.8 1.8E-18 3.8E-23 159.3 16.4 172 28-215 130-308 (324)
13 cd03317 NAAAR N-acylamino acid 99.8 2.1E-18 4.6E-23 160.1 16.2 172 32-215 139-313 (354)
14 cd03315 MLE_like Muconate lact 99.8 4E-18 8.7E-23 152.3 16.2 166 28-207 83-257 (265)
15 cd03318 MLE Muconate Lactonizi 99.8 7.6E-18 1.7E-22 157.1 14.1 169 29-211 141-320 (365)
16 cd03314 MAL Methylaspartate am 99.8 6.5E-18 1.4E-22 158.3 13.4 131 80-211 198-345 (369)
17 TIGR02534 mucon_cyclo muconate 99.8 2.1E-17 4.6E-22 154.4 16.3 168 29-209 140-317 (368)
18 cd03319 L-Ala-DL-Glu_epimerase 99.8 2.3E-17 5E-22 150.9 15.6 166 28-204 132-302 (316)
19 cd03322 rpsA The starvation se 99.8 1.1E-17 2.3E-22 156.3 13.4 162 30-204 126-289 (361)
20 cd03325 D-galactonate_dehydrat 99.7 2.1E-17 4.5E-22 153.8 14.9 162 29-205 122-301 (352)
21 cd03316 MR_like Mandelate race 99.7 1.5E-17 3.3E-22 154.2 13.4 160 30-204 139-315 (357)
22 cd00308 enolase_like Enolase-s 99.7 1.5E-17 3.2E-22 145.7 12.1 120 80-204 100-221 (229)
23 PRK15129 L-Ala-D/L-Glu epimera 99.7 3.5E-17 7.6E-22 150.6 14.6 157 27-202 126-289 (321)
24 PRK14017 galactonate dehydrata 99.7 4.8E-17 1.1E-21 152.8 14.7 161 29-204 123-301 (382)
25 cd03320 OSBS o-Succinylbenzoat 99.7 3.2E-17 6.8E-22 146.7 11.8 156 33-204 85-250 (263)
26 cd03321 mandelate_racemase Man 99.7 5.1E-17 1.1E-21 151.2 13.4 160 28-205 139-308 (355)
27 PRK02714 O-succinylbenzoate sy 99.7 1.1E-16 2.4E-21 147.3 15.0 159 28-203 116-287 (320)
28 cd03327 MR_like_2 Mandelate ra 99.7 7.3E-17 1.6E-21 149.5 12.7 148 29-186 119-279 (341)
29 PRK15072 bifunctional D-altron 99.7 1.6E-16 3.5E-21 150.5 15.3 122 80-205 212-333 (404)
30 cd03329 MR_like_4 Mandelate ra 99.7 2.1E-16 4.6E-21 147.8 15.3 161 27-205 140-312 (368)
31 TIGR01927 menC_gamma/gm+ o-suc 99.7 2.8E-16 6E-21 144.0 14.4 160 28-205 109-283 (307)
32 cd03323 D-glucarate_dehydratas 99.7 5.7E-16 1.2E-20 146.5 16.0 158 29-203 167-334 (395)
33 cd03328 MR_like_3 Mandelate ra 99.7 3.7E-16 8E-21 145.5 14.1 157 30-204 138-305 (352)
34 cd03326 MR_like_1 Mandelate ra 99.7 7.3E-16 1.6E-20 145.3 15.3 154 22-188 152-321 (385)
35 COG4948 L-alanine-DL-glutamate 99.7 3.2E-16 6.9E-21 146.6 11.7 162 30-206 142-313 (372)
36 TIGR03247 glucar-dehydr glucar 99.7 1.8E-15 4E-20 144.9 15.9 160 29-204 179-354 (441)
37 PRK05105 O-succinylbenzoate sy 99.7 2.2E-15 4.8E-20 138.8 14.6 165 27-212 112-290 (322)
38 cd03324 rTSbeta_L-fuconate_deh 99.6 7.6E-15 1.6E-19 139.7 15.1 146 30-186 196-351 (415)
39 PRK02901 O-succinylbenzoate sy 99.6 1.1E-13 2.3E-18 128.1 15.7 158 30-207 89-258 (327)
40 PRK15440 L-rhamnonate dehydrat 99.5 2.5E-13 5.4E-18 128.6 11.7 104 80-185 214-317 (394)
41 PLN02980 2-oxoglutarate decarb 99.4 1.9E-12 4.1E-17 140.7 15.0 159 28-203 1088-1262(1655)
42 PF07476 MAAL_C: Methylasparta 99.1 2.1E-09 4.4E-14 93.7 13.6 146 86-232 87-245 (248)
43 PF13378 MR_MLE_C: Enolase C-t 98.6 1.8E-07 4E-12 72.8 6.9 72 134-208 1-72 (111)
44 PF01188 MR_MLE: Mandelate rac 98.3 9.7E-07 2.1E-11 63.2 5.1 50 80-134 18-67 (67)
45 COG3799 Mal Methylaspartate am 97.8 0.00013 2.8E-09 66.5 9.5 128 85-213 246-386 (410)
46 COG1441 MenC O-succinylbenzoat 96.9 0.0044 9.6E-08 55.0 8.3 105 80-192 162-268 (321)
47 COG1105 FruK Fructose-1-phosph 96.8 0.019 4.2E-07 53.0 11.7 157 4-185 43-219 (310)
48 PRK13398 3-deoxy-7-phosphohept 95.9 0.5 1.1E-05 42.8 15.2 93 88-188 77-170 (266)
49 cd02932 OYE_YqiM_FMN Old yello 95.9 0.089 1.9E-06 48.8 10.6 71 84-158 237-319 (336)
50 PRK13396 3-deoxy-7-phosphohept 95.7 0.33 7.1E-06 45.8 13.9 134 27-188 110-244 (352)
51 PRK08673 3-deoxy-7-phosphohept 95.7 0.39 8.5E-06 44.9 14.3 106 89-202 144-253 (335)
52 PRK13397 3-deoxy-7-phosphohept 95.4 0.65 1.4E-05 41.8 14.1 134 27-188 24-158 (250)
53 cd04733 OYE_like_2_FMN Old yel 95.4 0.21 4.5E-06 46.4 11.2 116 18-158 187-321 (338)
54 TIGR01361 DAHP_synth_Bsub phos 95.2 0.19 4.2E-06 45.3 10.1 93 88-188 75-168 (260)
55 cd07941 DRE_TIM_LeuA3 Desulfob 94.9 0.67 1.5E-05 41.8 12.7 144 82-227 14-189 (273)
56 TIGR02090 LEU1_arch isopropylm 94.6 0.7 1.5E-05 43.5 12.5 128 82-214 16-163 (363)
57 TIGR03586 PseI pseudaminic aci 94.3 0.69 1.5E-05 43.2 11.5 145 30-187 15-168 (327)
58 PRK12595 bifunctional 3-deoxy- 94.2 1.6 3.5E-05 41.2 14.0 95 85-188 166-261 (360)
59 TIGR03569 NeuB_NnaB N-acetylne 94.2 0.37 8E-06 45.0 9.5 134 30-182 14-161 (329)
60 cd02801 DUS_like_FMN Dihydrour 94.0 0.33 7.1E-06 41.9 8.4 66 89-158 139-212 (231)
61 cd07940 DRE_TIM_IPMS 2-isoprop 93.6 2 4.3E-05 38.5 13.0 132 82-217 14-168 (268)
62 KOG2367 Alpha-isopropylmalate 93.2 0.81 1.7E-05 44.7 10.1 118 81-201 72-210 (560)
63 COG0821 gcpE 1-hydroxy-2-methy 93.2 0.35 7.5E-06 45.2 7.4 98 90-194 38-137 (361)
64 cd02803 OYE_like_FMN_family Ol 92.8 1.1 2.5E-05 40.9 10.3 70 85-158 225-310 (327)
65 cd07944 DRE_TIM_HOA_like 4-hyd 92.8 4.4 9.6E-05 36.5 13.9 143 82-228 14-177 (266)
66 PRK05481 lipoyl synthase; Prov 92.5 2 4.3E-05 39.2 11.4 175 29-245 80-274 (289)
67 cd07943 DRE_TIM_HOA 4-hydroxy- 92.5 3 6.4E-05 37.3 12.4 140 82-227 16-179 (263)
68 cd07939 DRE_TIM_NifV Streptomy 92.3 4.1 8.9E-05 36.3 13.0 132 82-218 14-165 (259)
69 PRK13957 indole-3-glycerol-pho 92.1 2.3 5E-05 38.2 11.1 101 84-191 60-162 (247)
70 TIGR02660 nifV_homocitr homoci 92.0 3.6 7.7E-05 38.7 12.8 142 82-227 17-180 (365)
71 PRK00366 ispG 4-hydroxy-3-meth 91.9 0.81 1.8E-05 43.1 8.1 103 89-198 43-148 (360)
72 PF00682 HMGL-like: HMGL-like 91.7 1.4 3.1E-05 38.3 9.2 135 83-221 9-169 (237)
73 cd07937 DRE_TIM_PC_TC_5S Pyruv 91.6 3.9 8.5E-05 36.9 12.2 140 83-227 16-187 (275)
74 PRK12344 putative alpha-isopro 91.2 4.8 0.0001 39.9 13.2 131 82-214 21-180 (524)
75 TIGR01212 radical SAM protein, 90.7 4 8.6E-05 37.4 11.4 114 81-211 87-212 (302)
76 PRK09389 (R)-citramalate synth 90.4 4.7 0.0001 39.6 12.3 130 82-215 18-166 (488)
77 PRK11858 aksA trans-homoaconit 90.2 2.4 5.2E-05 40.1 9.8 126 82-211 20-164 (378)
78 TIGR00612 ispG_gcpE 1-hydroxy- 89.5 1.3 2.8E-05 41.5 7.1 102 90-198 36-139 (346)
79 PRK05692 hydroxymethylglutaryl 88.6 2.9 6.3E-05 38.1 8.8 138 82-225 20-191 (287)
80 cd03174 DRE_TIM_metallolyase D 88.5 7.6 0.00016 34.0 11.2 125 82-212 13-166 (265)
81 cd02930 DCR_FMN 2,4-dienoyl-Co 88.5 4.3 9.4E-05 37.9 10.0 70 84-157 220-304 (353)
82 TIGR02026 BchE magnesium-proto 88.4 8.3 0.00018 37.8 12.3 126 83-211 220-372 (497)
83 PRK00915 2-isopropylmalate syn 87.9 6.3 0.00014 38.9 11.2 129 82-214 20-171 (513)
84 PLN02321 2-isopropylmalate syn 87.8 4.5 9.8E-05 41.1 10.2 133 81-216 101-264 (632)
85 PRK06552 keto-hydroxyglutarate 87.5 4.8 0.0001 35.2 9.1 112 85-211 22-135 (213)
86 PF04551 GcpE: GcpE protein; 86.3 1.6 3.4E-05 41.2 5.7 107 86-198 29-149 (359)
87 PF01207 Dus: Dihydrouridine s 86.0 3.6 7.7E-05 37.9 7.8 99 28-158 104-212 (309)
88 TIGR03217 4OH_2_O_val_ald 4-hy 85.7 22 0.00048 33.2 13.0 143 82-228 18-182 (333)
89 cd07945 DRE_TIM_CMS Leptospira 84.9 20 0.00043 32.6 12.1 131 81-214 12-169 (280)
90 cd00331 IGPS Indole-3-glycerol 84.9 23 0.0005 30.3 12.0 101 82-188 25-129 (217)
91 TIGR03551 F420_cofH 7,8-dideme 83.7 30 0.00066 32.0 13.1 112 84-200 69-214 (343)
92 COG2089 SpsE Sialic acid synth 83.7 39 0.00085 31.7 14.1 143 29-189 27-184 (347)
93 TIGR00977 LeuA_rel 2-isopropyl 83.6 11 0.00024 37.4 10.5 130 81-213 16-175 (526)
94 TIGR01182 eda Entner-Doudoroff 83.4 8.3 0.00018 33.6 8.5 93 85-189 17-110 (204)
95 cd07948 DRE_TIM_HCS Saccharomy 83.3 20 0.00044 32.2 11.3 141 82-227 16-179 (262)
96 PRK08195 4-hyroxy-2-oxovalerat 82.6 33 0.00073 32.0 12.8 146 82-233 19-186 (337)
97 PRK07094 biotin synthase; Prov 82.6 25 0.00055 32.0 11.9 112 85-202 70-203 (323)
98 PRK05718 keto-hydroxyglutarate 82.4 7 0.00015 34.2 7.7 111 84-211 23-134 (212)
99 PRK08508 biotin synthase; Prov 81.8 25 0.00054 31.7 11.4 112 84-200 39-172 (279)
100 PRK12928 lipoyl synthase; Prov 81.7 17 0.00038 33.2 10.4 155 83-241 85-278 (290)
101 PRK07114 keto-hydroxyglutarate 81.6 9.6 0.00021 33.6 8.4 95 85-189 24-121 (222)
102 PF01081 Aldolase: KDPG and KH 81.5 9.1 0.0002 33.1 8.0 93 84-188 16-109 (196)
103 PRK09140 2-dehydro-3-deoxy-6-p 81.1 13 0.00027 32.3 8.8 112 84-211 18-130 (206)
104 PRK06015 keto-hydroxyglutarate 80.6 12 0.00026 32.5 8.5 93 85-189 13-106 (201)
105 PF00218 IGPS: Indole-3-glycer 80.5 16 0.00036 32.8 9.6 102 84-191 67-169 (254)
106 PRK00278 trpC indole-3-glycero 80.0 13 0.00028 33.4 8.8 96 107-212 92-187 (260)
107 cd00956 Transaldolase_FSA Tran 79.8 23 0.0005 30.8 10.1 117 85-212 61-185 (211)
108 PTZ00314 inosine-5'-monophosph 79.6 18 0.00039 35.6 10.4 122 85-215 238-376 (495)
109 PLN02746 hydroxymethylglutaryl 78.6 41 0.00089 31.7 12.0 141 81-227 61-235 (347)
110 TIGR00973 leuA_bact 2-isopropy 78.1 34 0.00075 33.7 11.8 131 82-216 17-170 (494)
111 COG0119 LeuA Isopropylmalate/h 77.7 24 0.00051 34.0 10.3 134 81-217 17-171 (409)
112 PRK14040 oxaloacetate decarbox 77.5 61 0.0013 32.8 13.5 128 83-215 22-178 (593)
113 PRK06256 biotin synthase; Vali 77.5 38 0.00083 31.0 11.4 113 84-201 90-223 (336)
114 TIGR03550 F420_cofG 7,8-dideme 76.1 11 0.00023 34.8 7.3 35 166-202 148-186 (322)
115 COG0436 Aspartate/tyrosine/aro 75.9 26 0.00057 33.2 10.1 149 25-185 37-201 (393)
116 TIGR00735 hisF imidazoleglycer 75.5 58 0.0012 28.8 12.0 93 86-183 153-253 (254)
117 PRK00694 4-hydroxy-3-methylbut 75.1 12 0.00027 37.5 7.7 107 86-198 43-176 (606)
118 TIGR03700 mena_SCO4494 putativ 74.2 52 0.0011 30.7 11.4 109 85-199 79-222 (351)
119 PRK09427 bifunctional indole-3 73.1 35 0.00075 33.4 10.2 100 84-191 69-170 (454)
120 PRK14847 hypothetical protein; 73.0 63 0.0014 30.3 11.5 120 81-203 47-195 (333)
121 COG1012 PutA NAD-dependent ald 71.7 2 4.2E-05 42.0 1.3 86 147-237 155-247 (472)
122 TIGR00510 lipA lipoate synthas 71.5 40 0.00087 31.1 9.8 129 85-217 91-247 (302)
123 PRK06852 aldolase; Validated 71.0 17 0.00037 33.7 7.2 72 143-214 120-210 (304)
124 TIGR00423 radical SAM domain p 70.7 59 0.0013 29.6 10.8 34 165-200 143-180 (309)
125 TIGR00433 bioB biotin syntheta 70.0 57 0.0012 29.1 10.4 111 83-200 60-193 (296)
126 PRK05286 dihydroorotate dehydr 69.4 95 0.0021 28.9 12.0 102 87-188 124-246 (344)
127 COG1921 SelA Selenocysteine sy 69.2 20 0.00044 34.4 7.5 72 118-191 124-198 (395)
128 TIGR03471 HpnJ hopanoid biosyn 69.1 1E+02 0.0022 29.8 12.5 118 83-203 225-362 (472)
129 PRK09234 fbiC FO synthase; Rev 69.0 26 0.00055 37.0 8.8 134 28-195 101-248 (843)
130 cd05710 SIS_1 A subgroup of th 68.8 8 0.00017 30.1 4.0 54 154-207 48-101 (120)
131 cd04734 OYE_like_3_FMN Old yel 68.3 66 0.0014 29.9 10.7 70 85-158 225-314 (343)
132 PLN02495 oxidoreductase, actin 68.0 61 0.0013 31.0 10.5 101 85-188 95-215 (385)
133 PRK13802 bifunctional indole-3 67.8 46 0.00099 34.4 10.1 114 84-208 69-183 (695)
134 PRK05926 hypothetical protein; 67.3 76 0.0016 30.1 11.0 125 83-213 97-254 (370)
135 PF02896 PEP-utilizers_C: PEP- 67.1 29 0.00063 31.9 7.9 132 24-170 141-289 (293)
136 TIGR01108 oadA oxaloacetate de 66.8 1.5E+02 0.0032 30.0 13.5 129 83-215 16-172 (582)
137 cd00452 KDPG_aldolase KDPG and 66.6 50 0.0011 27.8 8.8 110 85-211 13-123 (190)
138 PRK12331 oxaloacetate decarbox 66.4 91 0.002 30.4 11.5 136 83-223 21-188 (448)
139 PRK02048 4-hydroxy-3-methylbut 66.2 22 0.00047 36.0 7.3 107 86-198 39-172 (611)
140 PRK07360 FO synthase subunit 2 65.8 1.1E+02 0.0023 28.8 11.7 112 84-200 90-236 (371)
141 PRK10874 cysteine sulfinate de 65.8 50 0.0011 30.7 9.5 103 86-189 89-199 (401)
142 PRK00748 1-(5-phosphoribosyl)- 65.6 56 0.0012 28.1 9.1 64 86-154 31-99 (233)
143 PF06506 PrpR_N: Propionate ca 65.3 33 0.00071 28.6 7.4 19 29-47 17-35 (176)
144 PRK06245 cofG FO synthase subu 65.3 32 0.00068 31.7 7.9 35 165-201 151-189 (336)
145 PLN03228 methylthioalkylmalate 64.7 61 0.0013 32.2 10.1 142 81-225 99-275 (503)
146 PRK10550 tRNA-dihydrouridine s 64.5 29 0.00062 32.1 7.4 42 114-158 182-223 (312)
147 PRK12581 oxaloacetate decarbox 64.2 1.3E+02 0.0029 29.6 12.2 129 84-217 31-188 (468)
148 PLN02460 indole-3-glycerol-pho 64.0 49 0.0011 31.1 8.8 102 84-191 138-241 (338)
149 PRK00912 ribonuclease P protei 63.8 49 0.0011 28.9 8.5 101 87-194 68-181 (237)
150 PF07994 NAD_binding_5: Myo-in 63.7 8.3 0.00018 35.5 3.7 77 85-187 186-263 (295)
151 cd00613 GDC-P Glycine cleavage 62.6 31 0.00067 31.8 7.4 85 102-187 109-196 (398)
152 PRK00451 glycine dehydrogenase 62.5 27 0.00059 33.1 7.1 84 102-186 155-239 (447)
153 TIGR03128 RuMP_HxlA 3-hexulose 62.1 95 0.0021 26.1 12.3 120 85-212 9-133 (206)
154 PLN00143 tyrosine/nicotianamin 61.9 1.1E+02 0.0023 28.8 11.0 149 28-187 48-210 (409)
155 PF03102 NeuB: NeuB family; I 61.6 57 0.0012 29.1 8.5 95 84-187 52-147 (241)
156 PLN02925 4-hydroxy-3-methylbut 61.4 30 0.00064 35.7 7.3 108 85-198 107-241 (733)
157 PRK07379 coproporphyrinogen II 60.9 41 0.00089 32.0 8.0 101 84-204 79-192 (400)
158 cd05008 SIS_GlmS_GlmD_1 SIS (S 60.8 13 0.00028 28.6 3.9 53 154-206 47-99 (126)
159 TIGR01675 plant-AP plant acid 60.7 28 0.00062 30.8 6.4 88 164-251 120-226 (229)
160 cd04735 OYE_like_4_FMN Old yel 59.9 68 0.0015 29.9 9.1 69 84-155 231-309 (353)
161 PF00072 Response_reg: Respons 59.8 64 0.0014 23.4 7.8 78 86-170 31-111 (112)
162 TIGR03470 HpnH hopanoid biosyn 59.5 1.4E+02 0.0031 27.3 11.2 124 83-211 57-197 (318)
163 PRK07455 keto-hydroxyglutarate 59.5 1E+02 0.0022 26.1 9.4 111 85-211 21-131 (187)
164 COG0134 TrpC Indole-3-glycerol 59.5 86 0.0019 28.3 9.3 111 84-208 65-179 (254)
165 PRK00164 moaA molybdenum cofac 59.2 1.4E+02 0.0031 27.1 12.2 119 82-206 46-188 (331)
166 PRK12330 oxaloacetate decarbox 58.8 66 0.0014 31.9 9.1 130 83-216 22-179 (499)
167 COG0434 SgcQ Predicted TIM-bar 58.8 99 0.0021 28.0 9.3 122 106-227 123-257 (263)
168 PRK05301 pyrroloquinoline quin 58.5 1.6E+02 0.0034 27.4 13.2 127 82-211 43-188 (378)
169 PRK08444 hypothetical protein; 58.4 1E+02 0.0022 29.0 10.0 105 84-194 79-218 (353)
170 PRK11382 frlB fructoselysine-6 58.1 13 0.00027 34.6 3.9 54 154-207 93-146 (340)
171 TIGR03392 FeS_syn_CsdA cystein 57.9 89 0.0019 29.0 9.6 86 103-189 108-196 (398)
172 cd08183 Fe-ADH2 Iron-containin 57.2 50 0.0011 30.9 7.8 71 123-194 19-89 (374)
173 PLN02389 biotin synthase 56.9 75 0.0016 30.2 8.9 113 84-201 115-249 (379)
174 PRK07107 inosine 5-monophospha 56.6 1.6E+02 0.0035 29.2 11.4 123 86-217 239-386 (502)
175 PRK06849 hypothetical protein; 56.1 95 0.0021 29.0 9.5 86 33-135 16-107 (389)
176 COG0520 csdA Selenocysteine ly 55.7 56 0.0012 31.3 7.9 75 112-188 122-200 (405)
177 COG0800 Eda 2-keto-3-deoxy-6-p 55.5 1.5E+02 0.0032 26.2 10.1 92 85-188 22-114 (211)
178 PLN02493 probable peroxisomal 55.5 55 0.0012 31.1 7.7 110 113-230 211-333 (367)
179 PRK09261 phospho-2-dehydro-3-d 55.3 1.9E+02 0.0041 27.4 12.4 139 27-180 62-207 (349)
180 COG1533 SplB DNA repair photol 54.4 1.2E+02 0.0026 27.9 9.5 145 31-212 64-219 (297)
181 TIGR00007 phosphoribosylformim 54.3 1.1E+02 0.0023 26.4 8.9 39 114-155 60-98 (230)
182 cd04740 DHOD_1B_like Dihydroor 54.1 1.6E+02 0.0036 26.3 13.5 96 86-185 73-184 (296)
183 PLN02656 tyrosine transaminase 54.0 1.9E+02 0.0042 27.1 12.0 149 28-187 47-209 (409)
184 TIGR01302 IMP_dehydrog inosine 53.3 87 0.0019 30.3 8.9 116 91-214 226-358 (450)
185 PHA01745 hypothetical protein 53.2 51 0.0011 30.2 6.7 101 68-179 42-156 (306)
186 PF01408 GFO_IDH_MocA: Oxidore 53.2 94 0.002 23.3 9.5 47 139-187 74-120 (120)
187 PF00465 Fe-ADH: Iron-containi 53.1 30 0.00065 32.2 5.5 76 115-192 11-90 (366)
188 TIGR01979 sufS cysteine desulf 52.9 60 0.0013 30.0 7.6 87 102-189 109-198 (403)
189 COG0352 ThiE Thiamine monophos 52.7 94 0.002 27.2 8.2 76 128-213 7-89 (211)
190 PRK10415 tRNA-dihydrouridine s 52.3 53 0.0012 30.3 7.0 20 213-232 249-268 (321)
191 TIGR02109 PQQ_syn_pqqE coenzym 52.1 1.9E+02 0.0042 26.5 13.1 126 83-211 35-179 (358)
192 cd04738 DHOD_2_like Dihydrooro 52.0 2E+02 0.0042 26.5 10.9 100 87-187 114-236 (327)
193 KOG2599 Pyridoxal/pyridoxine/p 51.8 50 0.0011 30.4 6.4 104 82-185 59-185 (308)
194 cd04732 HisA HisA. Phosphorib 51.4 1.6E+02 0.0034 25.2 10.1 48 107-158 171-218 (234)
195 PRK00979 tetrahydromethanopter 50.8 1.5E+02 0.0033 27.6 9.6 117 86-234 53-188 (308)
196 cd04726 KGPDC_HPS 3-Keto-L-gul 50.4 1.5E+02 0.0032 24.7 10.4 118 86-212 11-133 (202)
197 cd03789 GT1_LPS_heptosyltransf 50.0 57 0.0012 28.7 6.7 96 113-224 137-236 (279)
198 PRK05628 coproporphyrinogen II 49.9 99 0.0022 28.9 8.5 105 84-209 72-192 (375)
199 PRK08247 cystathionine gamma-s 49.8 2E+02 0.0042 26.7 10.5 117 89-210 78-200 (366)
200 PLN00145 tyrosine/nicotianamin 49.8 2.4E+02 0.0051 26.9 11.5 161 15-187 56-230 (430)
201 PRK05198 2-dehydro-3-deoxyphos 49.4 1.7E+02 0.0038 26.6 9.5 93 88-188 67-160 (264)
202 cd04732 HisA HisA. Phosphorib 49.3 1.2E+02 0.0025 26.0 8.3 43 112-158 59-101 (234)
203 PF00793 DAHP_synth_1: DAHP sy 49.2 1.1E+02 0.0024 27.7 8.4 152 27-201 25-184 (270)
204 PF13684 Dak1_2: Dihydroxyacet 49.1 85 0.0019 29.0 7.8 84 99-189 95-178 (313)
205 TIGR02815 agaS_fam putative su 48.8 24 0.00052 33.3 4.2 47 153-199 92-140 (372)
206 TIGR01305 GMP_reduct_1 guanosi 48.6 1.9E+02 0.0041 27.4 9.9 124 85-216 104-245 (343)
207 PF02677 DUF208: Uncharacteriz 48.5 9.4 0.0002 32.6 1.3 89 93-187 46-142 (176)
208 cd06334 PBP1_ABC_ligand_bindin 48.4 1.7E+02 0.0037 26.8 9.8 83 99-187 141-227 (351)
209 PRK09195 gatY tagatose-bisphos 48.4 1.1E+02 0.0023 28.1 8.2 106 119-229 67-203 (284)
210 TIGR00538 hemN oxygen-independ 48.3 84 0.0018 30.3 8.0 50 160-209 180-235 (455)
211 PRK13347 coproporphyrinogen II 47.9 92 0.002 30.1 8.2 50 159-209 180-236 (453)
212 PRK04128 1-(5-phosphoribosyl)- 47.7 1.9E+02 0.0041 25.3 9.5 68 86-156 31-100 (228)
213 COG0167 PyrD Dihydroorotate de 47.5 2.1E+02 0.0046 26.6 10.0 98 88-188 79-194 (310)
214 PRK00064 recF recombination pr 47.4 52 0.0011 30.8 6.2 66 93-163 293-359 (361)
215 PF07755 DUF1611: Protein of u 47.4 17 0.00036 33.7 2.8 84 94-204 79-174 (301)
216 PHA02567 rnh RnaseH; Provision 47.2 90 0.002 29.0 7.5 76 50-135 65-155 (304)
217 cd06660 Aldo_ket_red Aldo-keto 46.7 2E+02 0.0043 25.1 14.6 151 30-189 27-201 (285)
218 PRK11613 folP dihydropteroate 46.6 2E+02 0.0043 26.3 9.6 108 55-191 21-144 (282)
219 PRK06267 hypothetical protein; 46.3 1.7E+02 0.0037 27.3 9.4 111 84-199 62-187 (350)
220 PRK15108 biotin synthase; Prov 46.2 2.5E+02 0.0054 26.2 11.9 112 84-201 75-207 (345)
221 PRK02083 imidazole glycerol ph 46.1 57 0.0012 28.7 6.0 65 113-183 184-251 (253)
222 TIGR01496 DHPS dihydropteroate 45.8 1.6E+02 0.0035 26.3 8.9 101 82-191 17-129 (257)
223 cd06453 SufS_like Cysteine des 45.6 82 0.0018 28.7 7.2 84 103-187 90-176 (373)
224 COG0042 tRNA-dihydrouridine sy 45.4 41 0.00088 31.2 5.1 45 113-159 184-228 (323)
225 cd08192 Fe-ADH7 Iron-containin 45.2 1.4E+02 0.003 27.9 8.7 73 122-194 19-95 (370)
226 cd00739 DHPS DHPS subgroup of 44.9 2.3E+02 0.005 25.3 11.1 101 82-192 18-132 (257)
227 PLN02855 Bifunctional selenocy 44.7 1.1E+02 0.0023 28.8 7.9 85 103-188 124-211 (424)
228 PRK04311 selenocysteine syntha 44.6 70 0.0015 31.2 6.8 70 119-189 185-259 (464)
229 cd08190 HOT Hydroxyacid-oxoaci 44.2 1.4E+02 0.003 28.5 8.7 75 120-194 16-94 (414)
230 PLN02979 glycolate oxidase 44.2 1.1E+02 0.0023 29.2 7.7 92 113-214 210-309 (366)
231 PRK08248 O-acetylhomoserine am 44.2 1.5E+02 0.0033 28.4 9.0 112 93-209 95-212 (431)
232 PRK07709 fructose-bisphosphate 44.2 1.6E+02 0.0034 27.0 8.6 108 119-229 68-204 (285)
233 PRK15454 ethanol dehydrogenase 43.9 1.2E+02 0.0025 28.9 8.0 82 112-194 34-120 (395)
234 PRK06176 cystathionine gamma-s 43.9 1.6E+02 0.0035 27.6 9.0 112 94-210 81-198 (380)
235 PRK09295 bifunctional cysteine 43.3 98 0.0021 28.9 7.4 85 103-188 115-202 (406)
236 cd05014 SIS_Kpsf KpsF-like pro 43.2 40 0.00086 25.8 4.0 51 156-206 50-100 (128)
237 PF00128 Alpha-amylase: Alpha 43.2 26 0.00056 30.5 3.3 32 161-192 46-81 (316)
238 cd00615 Orn_deC_like Ornithine 42.4 43 0.00094 29.9 4.7 92 94-189 92-192 (294)
239 TIGR00611 recf recF protein. A 42.3 45 0.00097 31.4 4.9 62 98-162 300-362 (365)
240 PRK09282 pyruvate carboxylase 42.2 3.7E+02 0.0081 27.2 11.7 128 83-217 21-179 (592)
241 PF13407 Peripla_BP_4: Peripla 42.2 50 0.0011 28.1 4.9 80 106-189 8-89 (257)
242 TIGR00730 conserved hypothetic 42.2 35 0.00076 28.9 3.8 36 150-185 94-131 (178)
243 cd01568 QPRTase_NadC Quinolina 41.9 45 0.00097 30.1 4.7 72 150-227 148-222 (269)
244 cd08185 Fe-ADH1 Iron-containin 41.9 1.6E+02 0.0034 27.6 8.5 75 120-194 19-97 (380)
245 TIGR00347 bioD dethiobiotin sy 41.8 1.7E+02 0.0037 23.4 7.8 76 86-183 85-160 (166)
246 KOG0538 Glycolate oxidase [Ene 41.8 84 0.0018 29.5 6.4 114 112-233 209-335 (363)
247 PRK07428 nicotinate-nucleotide 41.6 45 0.00097 30.6 4.6 96 126-227 130-237 (288)
248 PRK01060 endonuclease IV; Prov 41.3 1.8E+02 0.0039 25.5 8.5 25 85-110 44-72 (281)
249 cd05005 SIS_PHI Hexulose-6-pho 41.3 2E+02 0.0043 23.6 9.1 54 153-206 75-128 (179)
250 PF02310 B12-binding: B12 bind 41.0 1.5E+02 0.0033 22.2 9.0 67 119-188 21-89 (121)
251 cd03527 RuBisCO_small Ribulose 40.7 1.7E+02 0.0037 22.6 7.3 68 23-102 7-74 (99)
252 TIGR01037 pyrD_sub1_fam dihydr 40.7 2.7E+02 0.0059 25.0 11.9 52 133-187 135-189 (300)
253 PRK03359 putative electron tra 40.6 2.3E+02 0.005 25.5 9.0 87 101-188 28-120 (256)
254 PRK13520 L-tyrosine decarboxyl 40.6 1.3E+02 0.0027 27.3 7.6 73 115-187 114-188 (371)
255 cd07938 DRE_TIM_HMGL 3-hydroxy 40.6 2.7E+02 0.0059 25.0 9.8 140 82-227 14-187 (274)
256 COG1066 Sms Predicted ATP-depe 40.2 3.2E+02 0.0068 26.8 10.2 101 80-188 101-219 (456)
257 PRK10624 L-1,2-propanediol oxi 40.2 1.5E+02 0.0034 27.8 8.2 72 123-194 26-101 (382)
258 PRK09250 fructose-bisphosphate 39.8 1.6E+02 0.0035 27.8 8.1 75 144-219 152-244 (348)
259 PF07969 Amidohydro_3: Amidohy 39.8 80 0.0017 29.2 6.2 102 85-187 123-245 (404)
260 cd05017 SIS_PGI_PMI_1 The memb 39.5 41 0.00088 25.9 3.6 33 153-185 43-75 (119)
261 PRK08227 autoinducer 2 aldolas 39.3 1.1E+02 0.0025 27.6 6.8 70 144-214 100-180 (264)
262 PRK12677 xylose isomerase; Pro 39.2 2.1E+02 0.0045 27.3 8.9 23 165-187 112-134 (384)
263 COG0106 HisA Phosphoribosylfor 39.1 2.9E+02 0.0063 24.8 11.5 118 36-174 112-239 (241)
264 TIGR00441 gmhA phosphoheptose 39.0 44 0.00095 27.2 3.8 51 154-204 80-130 (154)
265 TIGR02195 heptsyl_trn_II lipop 38.9 1.8E+02 0.004 26.2 8.3 44 165-219 241-284 (334)
266 cd03768 SR_ResInv Serine Recom 38.7 1.3E+02 0.0028 22.9 6.3 79 86-188 13-92 (126)
267 TIGR03812 tyr_de_CO2_Arch tyro 38.6 1.4E+02 0.003 27.1 7.5 76 114-189 115-192 (373)
268 cd08187 BDH Butanol dehydrogen 38.5 1.4E+02 0.0031 28.0 7.7 77 118-194 20-100 (382)
269 cd08189 Fe-ADH5 Iron-containin 38.3 2E+02 0.0043 26.9 8.6 68 127-194 27-97 (374)
270 PRK05567 inosine 5'-monophosph 38.2 2.4E+02 0.0053 27.5 9.5 117 91-215 230-363 (486)
271 COG3854 SpoIIIAA ncharacterize 38.0 74 0.0016 29.0 5.3 85 84-176 53-161 (308)
272 COG0621 MiaB 2-methylthioadeni 37.9 97 0.0021 30.2 6.5 136 30-200 174-318 (437)
273 cd08181 PPD-like 1,3-propanedi 37.6 1.7E+02 0.0037 27.2 8.0 73 122-194 21-97 (357)
274 PRK15482 transcriptional regul 37.6 1.6E+02 0.0035 26.2 7.6 55 154-208 183-237 (285)
275 TIGR02370 pyl_corrinoid methyl 37.6 2E+02 0.0044 24.4 7.9 66 121-189 107-176 (197)
276 PRK05660 HemN family oxidoredu 37.6 1.9E+02 0.0042 27.2 8.4 109 83-209 70-191 (378)
277 KOG4077 Cytochrome c oxidase, 37.5 35 0.00075 28.0 2.9 56 109-175 57-112 (149)
278 PRK09058 coproporphyrinogen II 37.5 1.6E+02 0.0035 28.4 8.0 45 159-204 191-240 (449)
279 PRK00331 glucosamine--fructose 37.2 47 0.001 33.2 4.4 57 152-208 335-391 (604)
280 cd08193 HVD 5-hydroxyvalerate 37.2 2E+02 0.0043 26.9 8.4 68 127-194 27-97 (376)
281 COG0656 ARA1 Aldo/keto reducta 37.1 3.3E+02 0.0072 24.9 11.1 111 86-201 83-208 (280)
282 TIGR01325 O_suc_HS_sulf O-succ 37.1 1.4E+02 0.0031 27.8 7.5 102 104-210 96-203 (380)
283 PRK14329 (dimethylallyl)adenos 37.0 4E+02 0.0087 25.9 11.3 151 82-233 194-397 (467)
284 TIGR00393 kpsF KpsF/GutQ famil 36.9 1.1E+02 0.0025 26.6 6.4 54 154-207 48-101 (268)
285 TIGR01265 tyr_nico_aTase tyros 36.7 3.4E+02 0.0074 25.2 10.0 152 26-188 45-210 (403)
286 PRK09234 fbiC FO synthase; Rev 36.7 50 0.0011 34.8 4.6 110 84-200 556-701 (843)
287 PLN02535 glycolate oxidase 36.7 1.6E+02 0.0035 28.0 7.6 94 113-214 210-309 (364)
288 cd08176 LPO Lactadehyde:propan 36.5 1.8E+02 0.004 27.2 8.1 73 122-194 23-99 (377)
289 PRK10892 D-arabinose 5-phospha 36.4 44 0.00096 30.4 3.8 55 154-208 95-149 (326)
290 COG1453 Predicted oxidoreducta 36.4 4E+02 0.0086 25.6 11.4 144 30-187 32-203 (391)
291 PRK05096 guanosine 5'-monophos 36.3 3.3E+02 0.0072 25.8 9.5 122 86-217 106-247 (346)
292 PRK14331 (dimethylallyl)adenos 36.3 89 0.0019 30.0 6.0 149 83-233 173-368 (437)
293 COG0403 GcvP Glycine cleavage 36.2 1.7E+02 0.0036 28.6 7.7 75 140-215 199-283 (450)
294 COG2006 Uncharacterized conser 36.1 2.8E+02 0.0061 25.6 8.7 60 152-234 36-105 (293)
295 TIGR02201 heptsyl_trn_III lipo 35.9 1.6E+02 0.0035 26.7 7.5 46 165-221 250-295 (344)
296 PF01380 SIS: SIS domain SIS d 35.9 53 0.0012 25.0 3.7 58 152-209 52-109 (131)
297 PLN02274 inosine-5'-monophosph 35.9 4E+02 0.0086 26.4 10.6 116 91-214 250-382 (505)
298 PRK13561 putative diguanylate 35.8 4.5E+02 0.0098 26.1 11.8 123 86-211 498-635 (651)
299 PRK08207 coproporphyrinogen II 35.8 2.1E+02 0.0047 28.1 8.7 44 160-204 298-346 (488)
300 cd08191 HHD 6-hydroxyhexanoate 35.6 2.2E+02 0.0047 26.8 8.4 74 119-194 15-93 (386)
301 PTZ00394 glucosamine-fructose- 35.5 44 0.00095 34.2 3.9 54 153-206 401-454 (670)
302 PRK00090 bioD dithiobiotin syn 35.4 2.7E+02 0.0059 23.5 8.4 26 84-109 87-112 (222)
303 COG4018 Uncharacterized protei 35.3 94 0.002 29.6 5.7 95 113-231 176-275 (505)
304 PRK00748 1-(5-phosphoribosyl)- 35.2 72 0.0016 27.4 4.8 45 111-158 175-219 (233)
305 PRK10551 phage resistance prot 35.2 4E+02 0.0086 26.2 10.5 115 88-211 364-498 (518)
306 TIGR00725 conserved hypothetic 35.1 52 0.0011 27.3 3.7 42 145-190 84-125 (159)
307 PF00289 CPSase_L_chain: Carba 35.1 56 0.0012 25.4 3.7 71 169-244 14-84 (110)
308 cd03332 LMO_FMN L-Lactate 2-mo 35.0 1.9E+02 0.0041 27.7 7.9 109 113-230 240-362 (383)
309 PRK11557 putative DNA-binding 34.8 2E+02 0.0043 25.4 7.7 51 154-204 176-226 (278)
310 PRK05967 cystathionine beta-ly 34.7 2.3E+02 0.005 27.0 8.5 110 96-210 98-213 (395)
311 PRK14041 oxaloacetate decarbox 34.7 4.6E+02 0.0099 25.8 14.0 129 83-216 20-177 (467)
312 cd08551 Fe-ADH iron-containing 34.5 2.1E+02 0.0045 26.6 8.1 68 127-194 24-94 (370)
313 TIGR02638 lactal_redase lactal 34.4 2.1E+02 0.0046 26.8 8.1 79 116-194 18-100 (379)
314 PRK07671 cystathionine beta-ly 34.4 3.1E+02 0.0068 25.6 9.3 112 94-210 81-198 (377)
315 COG3707 AmiR Response regulato 34.4 1.5E+02 0.0032 25.8 6.4 69 100-173 52-120 (194)
316 smart00642 Aamy Alpha-amylase 34.3 47 0.001 27.6 3.3 25 162-186 65-89 (166)
317 TIGR03588 PseC UDP-4-keto-6-de 34.3 1.7E+02 0.0036 27.1 7.4 80 103-187 71-155 (380)
318 TIGR01814 kynureninase kynuren 34.2 2.2E+02 0.0047 26.6 8.2 107 103-210 115-236 (406)
319 cd08550 GlyDH-like Glycerol_de 34.1 1.7E+02 0.0037 27.1 7.4 30 165-194 62-91 (349)
320 PRK09423 gldA glycerol dehydro 34.1 1.7E+02 0.0037 27.3 7.4 31 164-194 68-98 (366)
321 TIGR03127 RuMP_HxlB 6-phospho 34.0 64 0.0014 26.6 4.1 53 154-206 73-125 (179)
322 cd08194 Fe-ADH6 Iron-containin 33.9 2.1E+02 0.0046 26.7 8.0 68 127-194 24-94 (375)
323 cd04731 HisF The cyclase subun 33.8 3.1E+02 0.0068 23.7 11.4 37 112-151 57-93 (243)
324 TIGR01437 selA_rel uncharacter 33.8 1.2E+02 0.0026 28.2 6.3 88 118-207 116-209 (363)
325 COG1167 ARO8 Transcriptional r 33.6 2.4E+02 0.0053 27.2 8.6 96 87-187 164-267 (459)
326 PRK08064 cystathionine beta-ly 33.5 2E+02 0.0044 27.0 7.9 102 103-209 94-201 (390)
327 TIGR01303 IMP_DH_rel_1 IMP deh 33.4 2.3E+02 0.0049 27.9 8.3 121 88-215 224-360 (475)
328 PF02581 TMP-TENI: Thiamine mo 33.3 1.3E+02 0.0028 25.0 5.9 63 141-213 15-80 (180)
329 PRK03739 2-isopropylmalate syn 33.2 2.9E+02 0.0063 27.7 9.2 119 81-203 45-193 (552)
330 cd01455 vWA_F11C1-5a_type Von 33.2 2.1E+02 0.0046 24.7 7.2 93 113-214 72-175 (191)
331 cd05013 SIS_RpiR RpiR-like pro 33.2 1.6E+02 0.0036 22.1 6.1 49 154-202 61-109 (139)
332 cd03770 SR_TndX_transposase Se 32.9 2.4E+02 0.0052 22.3 7.2 81 85-188 18-107 (140)
333 TIGR03599 YloV DAK2 domain fus 32.8 2.1E+02 0.0044 28.6 8.0 61 116-176 324-384 (530)
334 PRK09860 putative alcohol dehy 32.8 2.7E+02 0.0058 26.3 8.5 31 164-194 72-102 (383)
335 cd00405 PRAI Phosphoribosylant 32.6 1.4E+02 0.003 25.2 6.1 81 138-224 6-92 (203)
336 TIGR00474 selA seryl-tRNA(sec) 32.4 1.5E+02 0.0033 28.9 6.9 68 122-190 183-255 (454)
337 TIGR00089 RNA modification enz 32.4 4.4E+02 0.0096 25.0 13.2 121 82-203 165-315 (429)
338 TIGR01329 cysta_beta_ly_E cyst 32.3 3.5E+02 0.0077 25.2 9.3 112 94-210 78-195 (378)
339 cd06595 GH31_xylosidase_XylS-l 32.2 2.5E+02 0.0055 25.3 8.0 103 30-145 23-135 (292)
340 TIGR01326 OAH_OAS_sulfhy OAH/O 32.1 3.3E+02 0.0072 25.8 9.2 112 93-209 88-205 (418)
341 PF13174 TPR_6: Tetratricopept 32.1 40 0.00087 19.0 1.9 17 86-102 15-31 (33)
342 smart00857 Resolvase Resolvase 32.1 2.4E+02 0.0053 21.9 7.1 28 160-187 74-102 (148)
343 TIGR01211 ELP3 histone acetylt 32.1 3E+02 0.0066 27.4 9.1 74 140-213 205-296 (522)
344 cd02929 TMADH_HD_FMN Trimethyl 32.0 4.4E+02 0.0094 24.8 10.0 37 119-158 282-318 (370)
345 cd08182 HEPD Hydroxyethylphosp 32.0 2.3E+02 0.0049 26.4 7.9 72 122-194 18-91 (367)
346 PRK02261 methylaspartate mutas 32.0 2.7E+02 0.0058 22.4 11.6 91 121-214 26-121 (137)
347 PRK05957 aspartate aminotransf 32.0 1.9E+02 0.0041 26.8 7.4 85 98-187 110-200 (389)
348 TIGR01976 am_tr_V_VC1184 cyste 31.9 2E+02 0.0043 26.4 7.5 84 103-187 106-193 (397)
349 PRK14327 (dimethylallyl)adenos 31.9 5.2E+02 0.011 25.6 11.6 122 82-204 238-389 (509)
350 PRK09249 coproporphyrinogen II 31.7 2.6E+02 0.0057 26.9 8.5 44 160-204 180-228 (453)
351 PF13607 Succ_CoA_lig: Succiny 31.7 1.1E+02 0.0023 24.9 4.9 63 129-193 31-93 (138)
352 cd06346 PBP1_ABC_ligand_bindin 31.7 3.6E+02 0.0079 23.8 10.2 82 100-187 139-224 (312)
353 cd06289 PBP1_MalI_like Ligand- 31.6 1.1E+02 0.0024 25.7 5.4 31 151-185 54-84 (268)
354 PF01075 Glyco_transf_9: Glyco 31.4 56 0.0012 28.0 3.5 46 165-221 173-218 (247)
355 TIGR03531 selenium_SpcS O-phos 31.2 2.2E+02 0.0048 27.7 7.9 77 114-190 160-245 (444)
356 PF01116 F_bP_aldolase: Fructo 31.2 1.3E+02 0.0029 27.4 6.0 53 128-183 73-130 (287)
357 cd08186 Fe-ADH8 Iron-containin 31.1 2.4E+02 0.0053 26.4 8.0 68 127-194 27-98 (383)
358 PRK05742 nicotinate-nucleotide 31.1 96 0.0021 28.3 5.0 95 126-227 124-230 (277)
359 cd00128 XPG Xeroderma pigmento 31.1 1.2E+02 0.0027 27.6 5.9 121 88-233 127-253 (316)
360 COG4552 Eis Predicted acetyltr 31.1 40 0.00088 32.0 2.6 100 82-198 157-257 (389)
361 cd07112 ALDH_GABALDH-PuuC Esch 30.9 60 0.0013 31.3 3.9 72 147-222 146-221 (462)
362 TIGR01135 glmS glucosamine--fr 30.8 1.4E+02 0.003 29.9 6.6 56 153-208 338-393 (607)
363 PRK05927 hypothetical protein; 30.8 1.1E+02 0.0024 28.7 5.5 33 166-200 184-220 (350)
364 PRK07226 fructose-bisphosphate 30.8 1.5E+02 0.0031 26.5 6.1 71 143-214 98-182 (267)
365 PLN02187 rooty/superroot1 30.7 4.5E+02 0.0098 25.3 9.9 160 14-187 69-244 (462)
366 PRK00950 histidinol-phosphate 30.7 4E+02 0.0088 24.0 10.0 96 87-187 96-195 (361)
367 cd08188 Fe-ADH4 Iron-containin 30.6 3E+02 0.0065 25.8 8.5 77 118-194 19-99 (377)
368 PLN02242 methionine gamma-lyas 30.5 3E+02 0.0065 26.3 8.6 113 94-210 108-226 (418)
369 TIGR00524 eIF-2B_rel eIF-2B al 30.5 3.2E+02 0.007 25.1 8.4 78 100-190 152-241 (303)
370 PRK14862 rimO ribosomal protei 30.4 5E+02 0.011 25.0 12.4 74 159-233 273-369 (440)
371 PTZ00295 glucosamine-fructose- 30.4 65 0.0014 32.6 4.2 53 153-205 369-421 (640)
372 cd07947 DRE_TIM_Re_CS Clostrid 30.2 4.2E+02 0.009 24.0 12.6 100 85-187 18-135 (279)
373 cd02940 DHPD_FMN Dihydropyrimi 30.2 4.1E+02 0.009 24.0 12.5 97 87-186 83-199 (299)
374 PRK08354 putative aminotransfe 30.1 4E+02 0.0086 23.8 10.2 91 87-187 63-157 (311)
375 cd04736 MDH_FMN Mandelate dehy 30.1 3.6E+02 0.0077 25.6 8.8 107 114-230 224-343 (361)
376 cd08556 GDPD Glycerophosphodie 30.1 2.9E+02 0.0063 22.2 10.3 140 31-187 12-167 (189)
377 TIGR02080 O_succ_thio_ly O-suc 30.0 2.6E+02 0.0057 26.2 8.0 119 87-210 75-200 (382)
378 PRK08649 inosine 5-monophospha 30.0 4.9E+02 0.011 24.7 10.9 93 114-214 175-287 (368)
379 TIGR01769 GGGP geranylgeranylg 29.9 3.7E+02 0.008 23.3 8.4 69 85-158 131-204 (205)
380 PRK08610 fructose-bisphosphate 29.9 2.4E+02 0.0052 25.9 7.4 65 116-183 65-134 (286)
381 cd04795 SIS SIS domain. SIS (S 29.8 80 0.0017 22.1 3.6 33 153-185 47-79 (87)
382 TIGR01517 ATPase-IIB_Ca plasma 29.8 1.6E+02 0.0034 31.4 7.0 100 102-205 572-694 (941)
383 PF01876 RNase_P_p30: RNase P 29.7 2.9E+02 0.0064 22.1 7.3 93 89-189 13-117 (150)
384 cd00423 Pterin_binding Pterin 29.6 4E+02 0.0086 23.6 9.5 113 55-191 7-131 (258)
385 cd06598 GH31_transferase_CtsZ 29.6 2.7E+02 0.0058 25.5 7.8 85 29-124 21-107 (317)
386 TIGR03699 mena_SCO4550 menaqui 29.5 1.5E+02 0.0032 27.2 6.1 34 164-199 178-215 (340)
387 PRK14338 (dimethylallyl)adenos 29.5 3.8E+02 0.0082 26.0 9.2 43 160-203 283-331 (459)
388 TIGR01858 tag_bisphos_ald clas 29.5 1.7E+02 0.0038 26.7 6.4 60 119-183 65-129 (282)
389 PF00248 Aldo_ket_red: Aldo/ke 29.5 3.8E+02 0.0082 23.3 15.1 151 28-187 13-188 (283)
390 PRK10916 ADP-heptose:LPS hepto 29.4 1.5E+02 0.0032 27.1 6.1 41 165-216 251-291 (348)
391 COG0313 Predicted methyltransf 29.3 4.5E+02 0.0097 24.1 10.4 146 12-189 77-227 (275)
392 PRK05968 hypothetical protein; 29.3 3.6E+02 0.0078 25.3 8.8 101 104-210 105-211 (389)
393 PF13433 Peripla_BP_5: Peripla 29.3 1.7E+02 0.0037 27.8 6.5 98 119-218 126-228 (363)
394 PF00478 IMPDH: IMP dehydrogen 29.1 5E+02 0.011 24.6 9.9 121 91-218 110-246 (352)
395 TIGR03738 PRTRC_C PRTRC system 29.0 60 0.0013 23.3 2.6 32 80-114 18-52 (66)
396 cd04729 NanE N-acetylmannosami 29.0 3.6E+02 0.0079 22.9 9.6 10 143-152 84-93 (219)
397 PRK13937 phosphoheptose isomer 28.9 84 0.0018 26.4 4.0 51 154-204 107-157 (188)
398 COG1737 RpiR Transcriptional r 28.9 3.4E+02 0.0074 24.3 8.2 55 152-206 176-230 (281)
399 TIGR01290 nifB nitrogenase cof 28.9 5.4E+02 0.012 24.9 11.0 123 82-206 57-217 (442)
400 COG0439 AccC Biotin carboxylas 28.9 1.4E+02 0.003 29.2 6.0 72 168-244 13-84 (449)
401 cd02070 corrinoid_protein_B12- 28.9 3.6E+02 0.0078 22.8 8.2 69 117-188 101-173 (201)
402 PRK11197 lldD L-lactate dehydr 28.8 4.1E+02 0.0089 25.4 9.0 105 114-229 233-353 (381)
403 cd06327 PBP1_SBP_like_1 Peripl 28.6 4.2E+02 0.0091 23.5 9.5 81 101-187 138-223 (334)
404 TIGR01524 ATPase-IIIB_Mg magne 28.6 1.1E+02 0.0023 32.4 5.5 101 102-206 508-629 (867)
405 PF03828 PAP_assoc: Cid1 famil 28.6 24 0.00052 23.7 0.5 13 101-113 47-59 (60)
406 PRK09482 flap endonuclease-lik 28.5 2.4E+02 0.0052 25.4 7.1 87 35-134 35-131 (256)
407 cd04747 OYE_like_5_FMN Old yel 28.5 1.8E+02 0.0039 27.5 6.6 19 139-157 308-326 (361)
408 PRK12342 hypothetical protein; 28.5 4E+02 0.0087 23.9 8.5 85 102-188 28-117 (254)
409 TIGR01362 KDO8P_synth 3-deoxy- 28.4 4.5E+02 0.0098 23.8 11.1 93 88-188 59-152 (258)
410 cd06375 PBP1_mGluR_groupII Lig 28.3 4.7E+02 0.01 25.0 9.6 96 90-191 161-268 (458)
411 cd02067 B12-binding B12 bindin 28.2 2.7E+02 0.0058 21.1 8.4 65 121-188 22-89 (119)
412 cd08170 GlyDH Glycerol dehydro 28.1 2.9E+02 0.0063 25.4 7.9 30 165-194 62-91 (351)
413 PF01729 QRPTase_C: Quinolinat 28.1 3E+02 0.0064 23.1 7.2 89 116-213 68-156 (169)
414 cd06363 PBP1_Taste_receptor Li 28.1 3.3E+02 0.007 25.4 8.3 92 91-188 164-268 (410)
415 PRK11706 TDP-4-oxo-6-deoxy-D-g 27.9 2.4E+02 0.0052 26.1 7.3 79 103-187 73-153 (375)
416 PRK08960 hypothetical protein; 27.9 3.8E+02 0.0082 24.7 8.6 151 26-187 42-205 (387)
417 cd06450 DOPA_deC_like DOPA dec 27.9 1.8E+02 0.0039 26.0 6.3 83 103-189 97-187 (345)
418 PRK01122 potassium-transportin 27.8 1.1E+02 0.0023 31.6 5.2 95 103-207 439-535 (679)
419 PF03796 DnaB_C: DnaB-like hel 27.7 2.9E+02 0.0064 24.0 7.5 101 84-187 57-177 (259)
420 PRK08445 hypothetical protein; 27.7 2.2E+02 0.0048 26.6 7.0 110 85-198 73-215 (348)
421 cd00614 CGS_like CGS_like: Cys 27.6 4.5E+02 0.0097 24.3 9.0 109 97-210 75-189 (369)
422 TIGR01328 met_gam_lyase methio 27.5 4E+02 0.0087 25.0 8.8 111 95-210 92-208 (391)
423 PRK06290 aspartate aminotransf 27.5 5.3E+02 0.011 24.3 10.0 95 87-186 115-218 (410)
424 PRK07259 dihydroorotate dehydr 27.4 4.6E+02 0.0099 23.5 12.5 97 85-185 74-187 (301)
425 PRK13523 NADPH dehydrogenase N 27.2 1.6E+02 0.0035 27.4 6.0 70 84-157 223-303 (337)
426 PRK12737 gatY tagatose-bisphos 27.2 2E+02 0.0043 26.3 6.4 60 119-183 67-131 (284)
427 PRK07084 fructose-bisphosphate 27.1 2.9E+02 0.0062 25.9 7.5 50 131-183 90-142 (321)
428 smart00475 53EXOc 5'-3' exonuc 27.0 2.8E+02 0.0061 24.8 7.3 90 32-135 34-132 (259)
429 KOG4021 Mitochondrial ribosoma 27.0 69 0.0015 28.0 3.1 57 125-183 107-170 (239)
430 PF01212 Beta_elim_lyase: Beta 27.0 2.2E+02 0.0047 25.9 6.6 114 86-203 54-185 (290)
431 PRK14012 cysteine desulfurase; 26.9 3.7E+02 0.008 25.0 8.4 84 103-188 96-182 (404)
432 PRK08072 nicotinate-nucleotide 26.8 1.1E+02 0.0023 28.0 4.5 96 126-227 122-229 (277)
433 PRK08133 O-succinylhomoserine 26.7 4.6E+02 0.01 24.5 9.1 111 95-210 94-210 (390)
434 PLN02766 coniferyl-aldehyde de 26.6 71 0.0015 31.3 3.6 73 146-222 179-255 (501)
435 TIGR00078 nadC nicotinate-nucl 26.4 1.1E+02 0.0024 27.6 4.6 71 150-226 145-218 (265)
436 PLN03033 2-dehydro-3-deoxyphos 26.4 2.7E+02 0.0059 25.7 7.0 93 88-188 73-166 (290)
437 PF06301 Lambda_Kil: Bacteriop 26.3 33 0.00071 22.5 0.8 29 6-42 7-35 (43)
438 PRK10090 aldehyde dehydrogenas 26.2 88 0.0019 29.8 4.1 72 147-222 93-168 (409)
439 cd03109 DTBS Dethiobiotin synt 26.1 2.6E+02 0.0056 22.0 6.2 41 152-192 68-110 (134)
440 TIGR03250 PhnAcAld_DH putative 26.0 82 0.0018 30.6 3.9 73 146-222 160-236 (472)
441 cd05006 SIS_GmhA Phosphoheptos 25.9 99 0.0021 25.4 3.9 51 154-204 102-152 (177)
442 PF03641 Lysine_decarbox: Poss 25.9 52 0.0011 26.2 2.1 44 142-187 45-91 (133)
443 TIGR01919 hisA-trpF 1-(5-phosp 25.8 3.8E+02 0.0082 23.7 7.8 58 168-225 150-213 (243)
444 TIGR00970 leuA_yeast 2-isoprop 25.7 4.8E+02 0.01 26.2 9.3 118 81-202 41-191 (564)
445 cd06451 AGAT_like Alanine-glyo 25.7 3.1E+02 0.0068 24.6 7.5 70 118-187 89-161 (356)
446 PLN02428 lipoic acid synthase 25.7 5.7E+02 0.012 24.1 12.6 137 87-241 165-321 (349)
447 PLN02981 glucosamine:fructose- 25.5 78 0.0017 32.4 3.8 50 156-205 413-462 (680)
448 cd07151 ALDH_HBenzADH NADP+-de 25.5 91 0.002 30.1 4.1 37 146-182 151-187 (465)
449 PRK05848 nicotinate-nucleotide 25.5 3.8E+02 0.0083 24.3 7.9 94 126-225 116-221 (273)
450 cd07142 ALDH_F2BC Arabidosis a 25.3 86 0.0019 30.4 3.9 73 147-223 163-239 (476)
451 PRK08599 coproporphyrinogen II 25.2 5.6E+02 0.012 23.8 11.4 102 84-204 64-177 (377)
452 PRK13587 1-(5-phosphoribosyl)- 25.2 4.6E+02 0.01 22.9 10.5 42 113-158 179-220 (234)
453 cd08180 PDD 1,3-propanediol de 25.2 4E+02 0.0086 24.4 8.1 67 127-194 23-92 (332)
454 COG2084 MmsB 3-hydroxyisobutyr 25.2 1.5E+02 0.0032 27.2 5.2 87 83-183 95-199 (286)
455 cd07766 DHQ_Fe-ADH Dehydroquin 25.2 4.7E+02 0.01 23.7 8.6 31 164-194 62-92 (332)
456 cd06361 PBP1_GPC6A_like Ligand 25.2 4.2E+02 0.0091 24.9 8.5 80 103-188 177-267 (403)
457 cd07083 ALDH_P5CDH ALDH subfam 25.2 1E+02 0.0022 30.2 4.3 72 147-222 176-251 (500)
458 PRK12755 phospho-2-dehydro-3-d 25.2 6E+02 0.013 24.2 13.6 137 27-178 63-206 (353)
459 PRK00414 gmhA phosphoheptose i 25.2 99 0.0022 26.2 3.9 52 155-206 113-164 (192)
460 PRK13355 bifunctional HTH-doma 25.2 6E+02 0.013 24.7 9.8 159 15-186 150-320 (517)
461 cd06502 TA_like Low-specificit 25.2 4.7E+02 0.01 23.1 8.5 89 97-186 67-165 (338)
462 PRK07810 O-succinylhomoserine 25.1 5.3E+02 0.012 24.4 9.2 112 94-210 102-219 (403)
463 PRK14330 (dimethylallyl)adenos 25.0 6.1E+02 0.013 24.2 13.5 74 159-233 267-364 (434)
464 TIGR01521 FruBisAldo_II_B fruc 25.0 2.5E+02 0.0055 26.5 6.8 52 129-183 76-137 (347)
465 KOG2335 tRNA-dihydrouridine sy 25.0 6.1E+02 0.013 24.2 9.8 104 18-155 112-229 (358)
466 COG1879 RbsB ABC-type sugar tr 24.8 1.9E+02 0.004 25.8 5.8 81 107-191 44-127 (322)
467 cd06362 PBP1_mGluR Ligand bind 24.8 4.7E+02 0.01 24.6 8.8 93 90-188 159-265 (452)
468 PRK13587 1-(5-phosphoribosyl)- 24.7 4.7E+02 0.01 22.8 9.8 38 114-154 64-101 (234)
469 TIGR00539 hemN_rel putative ox 24.5 2.9E+02 0.0063 25.6 7.2 51 160-210 129-185 (360)
470 PRK14340 (dimethylallyl)adenos 24.5 3.1E+02 0.0067 26.5 7.5 43 160-203 276-324 (445)
471 cd07942 DRE_TIM_LeuA Mycobacte 24.4 5.4E+02 0.012 23.4 9.2 119 81-203 16-164 (284)
472 PRK09265 aminotransferase AlaT 24.4 4.6E+02 0.01 24.3 8.6 96 87-186 104-207 (404)
473 TIGR02886 spore_II_AA anti-sig 24.4 2.9E+02 0.0063 20.3 6.5 56 136-191 18-82 (106)
474 PRK08208 coproporphyrinogen II 24.4 5E+02 0.011 24.8 8.9 50 160-209 170-225 (430)
475 PRK05994 O-acetylhomoserine am 24.3 3E+02 0.0065 26.3 7.4 81 103-188 104-186 (427)
476 TIGR00737 nifR3_yhdG putative 24.3 1.3E+02 0.0027 27.6 4.6 70 158-232 196-266 (319)
477 PRK01033 imidazole glycerol ph 24.2 4.5E+02 0.0097 23.2 8.0 47 108-157 178-224 (258)
478 cd07104 ALDH_BenzADH-like ALDH 23.9 92 0.002 29.5 3.8 36 147-182 120-155 (431)
479 PRK10840 transcriptional regul 23.9 4.2E+02 0.0091 21.9 9.0 80 86-171 37-121 (216)
480 PF04273 DUF442: Putative phos 23.9 1.2E+02 0.0027 23.5 3.8 22 140-161 16-37 (110)
481 PRK14339 (dimethylallyl)adenos 23.9 1.9E+02 0.0041 27.7 5.9 119 83-202 154-305 (420)
482 PRK10422 lipopolysaccharide co 23.8 2.7E+02 0.0059 25.4 6.8 48 165-223 252-299 (352)
483 cd07115 ALDH_HMSADH_HapE Pseud 23.8 1E+02 0.0022 29.6 4.0 70 147-222 139-214 (453)
484 PRK14326 (dimethylallyl)adenos 23.8 7.1E+02 0.015 24.5 12.4 121 82-203 183-333 (502)
485 cd06309 PBP1_YtfQ_like Peripla 23.7 2.4E+02 0.0052 24.0 6.1 80 106-189 9-89 (273)
486 TIGR00379 cobB cobyrinic acid 23.6 6.7E+02 0.015 24.2 10.6 137 37-183 19-171 (449)
487 PRK07550 hypothetical protein; 23.6 5.8E+02 0.012 23.4 10.5 96 88-187 100-203 (386)
488 PRK06207 aspartate aminotransf 23.5 5.9E+02 0.013 23.8 9.1 97 87-188 111-219 (405)
489 PRK13938 phosphoheptose isomer 23.4 1.1E+02 0.0025 26.1 3.9 50 155-204 115-164 (196)
490 PRK08462 biotin carboxylase; V 23.4 1.3E+02 0.0028 28.6 4.7 69 169-242 16-84 (445)
491 TIGR01303 IMP_DH_rel_1 IMP deh 23.4 1.5E+02 0.0033 29.1 5.2 73 141-220 227-302 (475)
492 COG2008 GLY1 Threonine aldolas 23.4 3.1E+02 0.0067 25.9 7.0 110 87-205 61-181 (342)
493 cd02069 methionine_synthase_B1 23.3 4.8E+02 0.01 22.5 7.8 64 122-188 112-177 (213)
494 cd07088 ALDH_LactADH-AldA Esch 23.1 94 0.002 29.9 3.7 73 146-222 154-230 (468)
495 cd07113 ALDH_PADH_NahF Escheri 23.1 1E+02 0.0022 29.8 4.0 69 147-222 164-238 (477)
496 PF03465 eRF1_3: eRF1 domain 3 23.0 2.8E+02 0.0061 21.4 5.8 56 133-188 18-91 (113)
497 TIGR01977 am_tr_V_EF2568 cyste 23.0 3.4E+02 0.0075 24.5 7.3 86 103-189 88-176 (376)
498 cd04723 HisA_HisF Phosphoribos 22.9 5E+02 0.011 22.5 10.4 72 83-158 144-217 (233)
499 cd06294 PBP1_ycjW_transcriptio 22.9 3.3E+02 0.0072 22.9 6.8 15 88-102 20-34 (270)
500 PRK11096 ansB L-asparaginase I 22.9 3.7E+02 0.0079 25.3 7.5 83 140-226 245-330 (347)
No 1
>KOG2670 consensus Enolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.8e-95 Score=652.80 Aligned_cols=243 Identities=71% Similarity=1.108 Sum_probs=240.3
Q ss_pred ChHHHHHHHhcCCCCCCCCCcccccCCCCCcHHHHHHHHHHHHhcCCccceeeeeehhhhcccccCCcceeecCCCCCCC
Q 040341 1 MFLQAVIKKKYGQDATNVGDEGGFAPNIQESYEGFELLKTAIAKGGYIGKIVIGMDVAASEFYDSKDKTYDLNFKEENND 80 (251)
Q Consensus 1 ~~lk~~l~~~~g~~~~~vgdeGGfap~~~~~eeal~~i~~Ai~~aGy~~kI~iglD~Aase~~~~~~g~Y~l~~~~~~~d 80 (251)
|+||.+||+|||..+|+|||||||||++.+++|+|++|.+||+++||++||+||||+|||+||++ |+|+|+|++|..|
T Consensus 191 h~LK~vik~kyG~~a~nVGDEGGfAPnI~~~~E~L~Li~~Ai~kagyt~kikIgmDvAaseF~~d--gkYDLdfk~~~~d 268 (433)
T KOG2670|consen 191 HHLKSVIKEKYGADATNVGDEGGFAPNIQTNEEALDLIKEAINKAGYTGKVKIGMDVAASEFYKD--GKYDLDFKSPNSD 268 (433)
T ss_pred HHHHHHHHHHhCccccccccccCcCCCccchHHHHHHHHHHHHhcCCCCceEEEEeechhhhhcC--CcccccCcCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999998 9999999999999
Q ss_pred CCCccChhhHHHHHHHhhhcCCceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeec
Q 040341 81 GSQKVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKV 160 (251)
Q Consensus 81 ~~~~~s~~elid~~~~l~~~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~ 160 (251)
+.+++|+++|.|+|++++++|||+||||||++|||++|++|.... .+|||||||+||||+||++|+++++||++|+|+
T Consensus 269 ~s~~~s~~~L~dlY~~~~k~yPivSiEDPFdqdDw~~w~~~~~~~--~iqiVgDDLtvTnpkri~~Ai~~k~cN~LLlKv 346 (433)
T KOG2670|consen 269 PSRWLSGDQLADLYKSFIKDYPIVSIEDPFDQDDWEAWSKFFKEV--GIQIVGDDLTVTNPKRIATAIEEKACNALLLKV 346 (433)
T ss_pred cccccCHHHHHHHHHHHHhcCCeeeecCCcchhhHHHHHHHhhcc--ceEEecCcccccCHHHHHHHHHHhhccceEeec
Confidence 999999999999999999999999999999999999999999887 899999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHHcCCcEEEecCCCCCCchhHhhhhhhcccCccccCCCCchhHHHHhhHHHHHHHHhCCCcccc
Q 040341 161 NQIGSVTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGPAAIYA 240 (251)
Q Consensus 161 nqiGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d~~iadLAva~~~~~ik~G~~~r~Er~aKyN~llrie~~l~~~~~~~ 240 (251)
||||||||+++++++|+++||+||||||||||+|+||+||.||+++||||+|+||||||++||||||||||||++.++|+
T Consensus 347 NQIGtvtEsiea~~~a~~~gwgvmvSHRSGETeDtFIaDL~VGl~tgqIKtGApcRsERlaKYNqLLRIeEelg~~a~~a 426 (433)
T KOG2670|consen 347 NQIGTVTESIEAAKLARSAGWGVMVSHRSGETEDTFIADLVVGLGTGQIKTGAPCRSERLAKYNQLLRIEEELGDDARYA 426 (433)
T ss_pred cccccHHHHHHHHHHHHhcCceEEEeccCCCcccchHHHhhhhhccceeecCCCchHHHHHHHHHHHHHHHHhcccceec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCC
Q 040341 241 GTKFRAP 247 (251)
Q Consensus 241 ~~~~~~~ 247 (251)
|.+||+|
T Consensus 427 G~~f~~~ 433 (433)
T KOG2670|consen 427 GENFRNP 433 (433)
T ss_pred cccccCC
Confidence 9999987
No 2
>PF00113 Enolase_C: Enolase, C-terminal TIM barrel domain; InterPro: IPR020810 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ]. In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3TQP_B 2PU1_A 1OEP_A 2PA6_A 1PDY_A 1PDZ_A 3UJ2_E ....
Probab=100.00 E-value=8.2e-93 Score=642.86 Aligned_cols=247 Identities=64% Similarity=1.020 Sum_probs=219.0
Q ss_pred ChHHHHHHHhcCCCCCCCCCcccccCCCCCcHHHHHHHHHHHHhcCCccceeeeeehhhhcccccCCcceeecCCCCCCC
Q 040341 1 MFLQAVIKKKYGQDATNVGDEGGFAPNIQESYEGFELLKTAIAKGGYIGKIVIGMDVAASEFYDSKDKTYDLNFKEENND 80 (251)
Q Consensus 1 ~~lk~~l~~~~g~~~~~vgdeGGfap~~~~~eeal~~i~~Ai~~aGy~~kI~iglD~Aase~~~~~~g~Y~l~~~~~~~d 80 (251)
|+||++|++|+|..+++|||||||+|+++++|+||++|++||+++||+++|.||+|||||+||+.++|+|++.++.+..+
T Consensus 49 ~~Lk~il~~k~G~~~t~vgDeGGfaP~~~~~eeaL~ll~~Ai~~aGy~~~v~ialD~AAsefyd~~~gkY~~~~~~~~~~ 128 (295)
T PF00113_consen 49 HALKKILKKKGGKFATNVGDEGGFAPNIDDNEEALDLLMEAIKEAGYEPDVAIALDVAASEFYDEEDGKYDLEFKSKEKD 128 (295)
T ss_dssp HHHHHHHHHHH-GGGGSBETTSSB--SBSSHHHHHHHHHHHHHHTT-TTTBEEEEE--GGGGEETETTEEETTTTSSSST
T ss_pred HHHHHHHhhcccccccccCcccccCCCCcchhHHHHHHHHHHHHccccceeeeeccccHHHhhhccCCeEEEeecccccc
Confidence 68999999999999999999999999999999999999999999999999999999999999988889999998765566
Q ss_pred CCCccChhhHHHHHHHhhhcCCceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeec
Q 040341 81 GSQKVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKV 160 (251)
Q Consensus 81 ~~~~~s~~elid~~~~l~~~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~ 160 (251)
+++.+|++||+|+|.+|+++|||+||||||+++||++|++|++++|++||||||||+||||+||++++++++||++||||
T Consensus 129 ~~~~~s~delid~y~~li~~YPIvsIEDpf~edD~e~w~~lt~~~g~~~~iVGDDl~vTn~~ri~~~i~~~~~na~llK~ 208 (295)
T PF00113_consen 129 PSRYKSSDELIDYYKDLIKKYPIVSIEDPFDEDDWEGWAKLTKRLGDKIQIVGDDLFVTNPKRIKKGIEKKACNALLLKP 208 (295)
T ss_dssp GGGEEEHHHHHHHHHHHHHHS-EEEEESSS-TT-HHHHHHHHHHHTTTSEEEESTTTTT-HHHHHHHHHCT--SEEEE-H
T ss_pred cccccCHHHHHHHHHHHHHhcCeEEEEccccccchHHHHHHHHhhhcceeeecccccccchhhhhccchhhhccchhhhh
Confidence 77889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHHcCCcEEEecCCCCCCchhHhhhhhhcccCccccCCCCchhHHHHhhHHHHHHHHhCCCcccc
Q 040341 161 NQIGSVTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGPAAIYA 240 (251)
Q Consensus 161 nqiGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d~~iadLAva~~~~~ik~G~~~r~Er~aKyN~llrie~~l~~~~~~~ 240 (251)
||||||||+++++++|+++||.+|||||||||+|+||||||||++++|||+|+|||+||++||||||||||+|+++++|+
T Consensus 209 NQigTvte~lea~~~a~~~g~~~vvS~rsgEteD~~iadLaVg~~a~~iK~G~p~r~Er~aKyN~LLrIeeelg~~a~~~ 288 (295)
T PF00113_consen 209 NQIGTVTETLEAVKLAKSAGWGVVVSHRSGETEDTFIADLAVGLGAGQIKTGAPCRGERIAKYNRLLRIEEELGSKAKYA 288 (295)
T ss_dssp HHHSSHHHHHHHHHHHHHTT-EEEEE--SS--S--HHHHHHHHTT-SEEEEESSSSHHHHHHHHHHHHHHHHHGGGSEE-
T ss_pred hhhHHHHHHHHHHHHHHHCCceeeccCCCCCcCchhHHHHHhccCcCeEecccchhhHHHHHhhHHHHHHHHcCCCCEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCC
Q 040341 241 GTKFRAP 247 (251)
Q Consensus 241 ~~~~~~~ 247 (251)
|++||+|
T Consensus 289 g~~~~~~ 295 (295)
T PF00113_consen 289 GKNFRKP 295 (295)
T ss_dssp GGGCTSC
T ss_pred ChhhhCc
Confidence 9999987
No 3
>COG0148 Eno Enolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.3e-86 Score=604.63 Aligned_cols=233 Identities=53% Similarity=0.828 Sum_probs=225.3
Q ss_pred ChHHHHHHHhcCCCCCCCCCcccccCCCCCcHHHHHHHHHHHHhcCCcc--ceeeeeehhhhcccccCCcceeecCCCCC
Q 040341 1 MFLQAVIKKKYGQDATNVGDEGGFAPNIQESYEGFELLKTAIAKGGYIG--KIVIGMDVAASEFYDSKDKTYDLNFKEEN 78 (251)
Q Consensus 1 ~~lk~~l~~~~g~~~~~vgdeGGfap~~~~~eeal~~i~~Ai~~aGy~~--kI~iglD~Aase~~~~~~g~Y~l~~~~~~ 78 (251)
|+||++|++++ ..|+|||||||+|++.++++||++|.+||+++||++ +|.+|+|||+||||++ ++|+++
T Consensus 186 h~lk~~l~~~g--~~t~vGDEGgfAP~l~~~eeald~i~~Aie~agy~~g~~i~~alD~Aasefy~~--~~Y~~~----- 256 (423)
T COG0148 186 HHLKKLLKEKG--LSTGVGDEGGFAPNLKSNEEALDILVEAIEEAGYEPGEDIALALDVAASEFYKD--GKYVLE----- 256 (423)
T ss_pred HHHHHHHhhcC--ccccccCCcccCCCCCccHHHHHHHHHHHHHhCCCCCcceeeeehhhhhhhccC--Ceeeec-----
Confidence 78999999994 777799999999999999999999999999999996 5999999999999998 779986
Q ss_pred CCCCCccChhhHHHHHHHhhhcCCceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEe
Q 040341 79 NDGSQKVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLL 158 (251)
Q Consensus 79 ~d~~~~~s~~elid~~~~l~~~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilI 158 (251)
+..+|++||++||.+|+++|||++|||||+|+||++|++|++++|+++||||||||||||++++++|+++++|+|+|
T Consensus 257 ---~~~~~~~e~i~~~~~Lv~~YpivsiEDpl~E~Dweg~~~lt~~~g~kvqivGDDLfvTN~~~l~~gi~~g~aNaiLI 333 (423)
T COG0148 257 ---GESLTSEELIEYYLELVKKYPIVSIEDPLSEDDWEGFAELTKRLGDKVQIVGDDLFVTNPKRLKKGIEKGAANAILI 333 (423)
T ss_pred ---CcccCHHHHHHHHHHHHHhCCEEEEcCCCCchhHHHHHHHHHhhCCeEEEECCcceecCHHHHHHHHHhccCceEEE
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccccHHHHHHHHHHHHHcCCcEEEecCCCCCCchhHhhhhhhcccCccccCCCCchhHHHHhhHHHHHHHHhCCCcc
Q 040341 159 KVNQIGSVTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGPAAI 238 (251)
Q Consensus 159 K~nqiGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d~~iadLAva~~~~~ik~G~~~r~Er~aKyN~llrie~~l~~~~~ 238 (251)
|||||||||||++++++|+++||.+|||||||||+|+||||||||++++|||+|+||||||++||||||||||+|++.++
T Consensus 334 K~NQIGTLTEt~~ai~~A~~~gy~~viSHRSGETeD~tIAdLAVa~~agqIKTGs~sRseRiaKyNqLlrIEeeLg~~a~ 413 (423)
T COG0148 334 KPNQIGTLTETLEAINLAKDAGYTAVISHRSGETEDTTIADLAVATNAGQIKTGSLSRSERVAKYNELLRIEEELGDKAR 413 (423)
T ss_pred echhcccHHHHHHHHHHHHHCCCeEEEecCCCCcccchHHHHHHHhCCCeeecCCCcchhHHHHHHHHHHHHHHhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcccc
Q 040341 239 YAGTKFR 245 (251)
Q Consensus 239 ~~~~~~~ 245 (251)
|+|..++
T Consensus 414 y~g~~~f 420 (423)
T COG0148 414 YAGIKEF 420 (423)
T ss_pred cCChHhh
Confidence 9997654
No 4
>PTZ00081 enolase; Provisional
Probab=100.00 E-value=3e-74 Score=546.90 Aligned_cols=242 Identities=71% Similarity=1.097 Sum_probs=231.6
Q ss_pred ChHHHHHHHhcCCCCCCCCCcccccCCCCCcHHHHHHHHHHHHhcCCccceeeeeehhhhcccccCCcceeecCCCCCCC
Q 040341 1 MFLQAVIKKKYGQDATNVGDEGGFAPNIQESYEGFELLKTAIAKGGYIGKIVIGMDVAASEFYDSKDKTYDLNFKEENND 80 (251)
Q Consensus 1 ~~lk~~l~~~~g~~~~~vgdeGGfap~~~~~eeal~~i~~Ai~~aGy~~kI~iglD~Aase~~~~~~g~Y~l~~~~~~~d 80 (251)
|.||++|++|||..+++|||||||+|++++++++|++|.+||+++||+++|.||+|||||+||+.++++|+++|+.|..+
T Consensus 197 ~~l~~il~~~~g~~~~~vgdeGgfap~~~~~eeal~ll~eAi~~ag~~~~v~i~lD~Aase~~~~~~~~Y~~~f~~~~~~ 276 (439)
T PTZ00081 197 HSLKSVIKKKYGLDATNVGDEGGFAPNIKDPEEALDLLVEAIKKAGYEGKVKICMDVAASEFYDKEKKVYDLDFKNPNND 276 (439)
T ss_pred HHHHHHHHHhcCCCccccccCCCcCCCCCCHHHHHHHHHHHHHHcCCcCceEEEEehhhhhhhhccCCceeeeeccccCc
Confidence 67999999999877899999999999999999999999999999999988999999999999976668999987664434
Q ss_pred CCCccChhhHHHHHHHhhhcCCceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeec
Q 040341 81 GSQKVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKV 160 (251)
Q Consensus 81 ~~~~~s~~elid~~~~l~~~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~ 160 (251)
.++.+|++||++||.+++++|||++|||||+++||++|++|++++|+++||||||+++||+++++++++.++||+++|||
T Consensus 277 ~~~~~s~~eli~~~~~~l~~y~I~~IEDPl~~~D~eg~~~Lt~~lg~~i~IvgDE~~~tn~~~l~~~I~~~aad~i~iKv 356 (439)
T PTZ00081 277 KSNKLTGEELVELYLDLVKKYPIVSIEDPFDQDDWEAYAKLTAAIGQKVQIVGDDLLVTNPTRIKKAIEKKACNALLLKV 356 (439)
T ss_pred cccccCHHHHHHHHHHHHhcCCcEEEEcCCCcccHHHHHHHHHhhCCCceEEcCCcccCCHHHHHHHHHhCCCCEEEecc
Confidence 56779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHHcCCcEEEecCCCCCCchhHhhhhhhcccCccccCCCCchhHHHHhhHHHHHHHHhCCCcccc
Q 040341 161 NQIGSVTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGPAAIYA 240 (251)
Q Consensus 161 nqiGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d~~iadLAva~~~~~ik~G~~~r~Er~aKyN~llrie~~l~~~~~~~ 240 (251)
||+||+||+++++++|+++|+.+|+|||||||+|+||||||||++++|||+|+|||+||++||||||||||+|++.+.|+
T Consensus 357 nqiGGITe~l~~a~lA~~~Gi~~iishrsgETed~~iadLAVa~~~~~iK~G~~~r~er~aKyN~llriee~l~~~~~~~ 436 (439)
T PTZ00081 357 NQIGTVTEAIEAAKLAQKNGWGVMVSHRSGETEDTFIADLVVGLGTGQIKTGAPCRSERLAKYNQLLRIEEELGSNAVYA 436 (439)
T ss_pred ccccCHHHHHHHHHHHHHcCCcEEEeCCCchhHHHHHHHHHHHcCCCceecCCCcchHHHHHHHHHHHHHHHhccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Cc
Q 040341 241 GT 242 (251)
Q Consensus 241 ~~ 242 (251)
|.
T Consensus 437 ~~ 438 (439)
T PTZ00081 437 GE 438 (439)
T ss_pred CC
Confidence 75
No 5
>PTZ00378 hypothetical protein; Provisional
Probab=100.00 E-value=1.3e-73 Score=542.81 Aligned_cols=220 Identities=20% Similarity=0.299 Sum_probs=205.8
Q ss_pred CCCCCCCcccc-cCCCCCcHHHHHHHHHHHHhcCCcc--ceeeeeehhhhcc------------cccCC----cceeecC
Q 040341 14 DATNVGDEGGF-APNIQESYEGFELLKTAIAKGGYIG--KIVIGMDVAASEF------------YDSKD----KTYDLNF 74 (251)
Q Consensus 14 ~~~~vgdeGGf-ap~~~~~eeal~~i~~Ai~~aGy~~--kI~iglD~Aase~------------~~~~~----g~Y~l~~ 74 (251)
++|+||||||| +|+++++|+||++|.+||+++||++ +|.|||||||||| |++++ ++|.+.
T Consensus 242 ~~t~vGDEGGfaap~~~~~eeAL~li~eAi~~aGy~pG~dI~iglD~AASef~~~~~~~~~~~~y~~~k~~~e~~Y~l~- 320 (518)
T PTZ00378 242 HNSSVRSDGSLHWDGFANLTDAVKLATEALRAVQLTPGTDVCLGLRMAASTTRVPATAVADGGAWKEAKDDCEVLYSLF- 320 (518)
T ss_pred ccCccCCCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCeEEEEEecccccccccccccccchhhccccCCCceeeeec-
Confidence 67999999999 6889999999999999999999995 5999999999999 97632 258874
Q ss_pred CCCCCCCCCccChhhHHHHHHHhhhcCC--ceeecCCCCcccHHHHHHHHhhhCCceEEEccccccc-CHHHHHHHHhcc
Q 040341 75 KEENNDGSQKVSGDGLKNVYRSFISDHP--IVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVT-NPKRVEKAIKEK 151 (251)
Q Consensus 75 ~~~~~d~~~~~s~~elid~~~~l~~~yp--I~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vt-n~~~i~~~i~~~ 151 (251)
+ ....+|++||++||++|+++|| |+||||||+|+||++|++||+++|++||||||||||| |+++++++|+.+
T Consensus 321 ~-----~~~~~t~~elieyy~~li~kYP~iIvsIEDp~~E~D~~gw~~lt~~lG~~iqivGDDL~vT~n~~ri~~gi~~~ 395 (518)
T PTZ00378 321 P-----GEPDVTGDQLSEYVREQLQAVPDIVVYVEDTHCDEDTFGLQRLQAALGDSIVLSGVDVYARSEYKKVESGLRGL 395 (518)
T ss_pred C-----CCCCCCHHHHHHHHHHHHHHCCCceEEEecCCCchHHHHHHHHHHHhCCeEEEECCCcCcCCCHHHHHHHHhcC
Confidence 2 2245899999999999999999 9999999999999999999999999999999999999 899999999999
Q ss_pred CcceeEeeccccccHHHHHHHHHHHHHcCCcEE---EecCCCCCCchhHhhhhhhcccCccccCCCCchhHHHHhhHHHH
Q 040341 152 TCNALLLKVNQIGSVTESIEAVKMSKRAGWGVM---ASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLR 228 (251)
Q Consensus 152 a~n~ilIK~nqiGtlte~l~~~~~a~~~g~~~i---vs~rsgEt~d~~iadLAva~~~~~ik~G~~~r~Er~aKyN~llr 228 (251)
+||++||||||||||||+++++++|+++||.+| |||||| +|+||||||||++++|||+|+|||+||++|||||||
T Consensus 396 ~~NaiLIK~NQIGTlSEtieav~lA~~~g~~~v~v~vShRSG--eD~~IAdLAVa~ga~~IKtGa~~r~ER~aKyNqLlr 473 (518)
T PTZ00378 396 WTSNIVLNPCAIGTLSDVVEIVRAVGEDEGRAVTVLVQTLAG--NAATAAHLAVAMGARFLCSGGLFSAHQCEVVSQLAS 473 (518)
T ss_pred CCceEEEccccceeHHHHHHHHHHHHHcCCcEEccccCCCcC--CccHHHHHHHHcCCCccccCCCccchHHHHHHHHHH
Confidence 999999999999999999999999999999999 999999 799999999999999999999999999999999999
Q ss_pred HHHHhCCCccccC
Q 040341 229 IEEELGPAAIYAG 241 (251)
Q Consensus 229 ie~~l~~~~~~~~ 241 (251)
|||||+.....+.
T Consensus 474 IeeeLg~~~~l~~ 486 (518)
T PTZ00378 474 RQDELTHSRMLAP 486 (518)
T ss_pred HHHHhCcCCccCC
Confidence 9999987665554
No 6
>PLN00191 enolase
Probab=100.00 E-value=9.1e-71 Score=524.98 Aligned_cols=244 Identities=81% Similarity=1.207 Sum_probs=231.4
Q ss_pred ChHHHHHHHhcCCCCCCCCCcccccCCCCCcHHHHHHHHHHHHhcCCccceeeeeehhhhcccccCCcceeecCCCCCCC
Q 040341 1 MFLQAVIKKKYGQDATNVGDEGGFAPNIQESYEGFELLKTAIAKGGYIGKIVIGMDVAASEFYDSKDKTYDLNFKEENND 80 (251)
Q Consensus 1 ~~lk~~l~~~~g~~~~~vgdeGGfap~~~~~eeal~~i~~Ai~~aGy~~kI~iglD~Aase~~~~~~g~Y~l~~~~~~~d 80 (251)
|.||++|+++||..+++|||||||+|++++++|+|++|.+||+++||+++|.||+|+|||+||+. +++|+++|+++..+
T Consensus 212 ~~l~~il~~~~g~~~~~vgdeGg~ap~~~~~~eal~ll~eAi~~ag~~~~i~i~lD~Aase~~~~-~~~Y~~~~~~~~~~ 290 (457)
T PLN00191 212 HHLKAVIKKKYGQDACNVGDEGGFAPNIQDNKEGLELLKEAIEKAGYTGKIKIGMDVAASEFYTK-DKKYDLDFKEENND 290 (457)
T ss_pred HHHHHHHHHhcCCCcCccCCCCCcCCCCCCHHHHHHHHHHHHHHcCCCCceEEEeehhhhhhccc-CCceEeeccccCCC
Confidence 67999999999877899999999999999999999999999999999988999999999999972 38999977654334
Q ss_pred CCCccChhhHHHHHHHhhhcCCceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeec
Q 040341 81 GSQKVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKV 160 (251)
Q Consensus 81 ~~~~~s~~elid~~~~l~~~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~ 160 (251)
.+..+|++|++++|.+|+++|||++|||||+++||++|++|+++. ++||||||+++||++++++++++++||+++||+
T Consensus 291 ~~~~~s~~e~i~~~~~L~~~y~I~~IEDPl~~~D~eg~~~Lt~~~--~ipIvgDE~~vtn~~~l~~~I~~~aad~i~iKl 368 (457)
T PLN00191 291 GSNKKSGDELIDLYKEFVSDYPIVSIEDPFDQDDWEHWAKLTSLE--DVQIVGDDLLVTNPKRVAKAIQEKACNALLLKV 368 (457)
T ss_pred cccccCHHHHHHHHHHHhhcCCcEEEECCCCcccHHHHHHHHccC--CCcEEccCcccCCHHHHHHHHHhCCCCEEEecc
Confidence 456789999999999999999999999999999999999999996 899999999899999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHHcCCcEEEecCCCCCCchhHhhhhhhcccCccccCCCCchhHHHHhhHHHHHHHHhCCCcccc
Q 040341 161 NQIGSVTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGPAAIYA 240 (251)
Q Consensus 161 nqiGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d~~iadLAva~~~~~ik~G~~~r~Er~aKyN~llrie~~l~~~~~~~ 240 (251)
||+||+|++++++++|+++||.+||||||+||+|+++||||||++++|+|+|+||||||++||||||||||+|++.+.|+
T Consensus 369 ~qiGGITea~~~a~lA~~~G~~~~ishrsgET~d~~~Adlava~~~~~ik~G~~~r~er~aKyN~llriee~l~~~~~~~ 448 (457)
T PLN00191 369 NQIGTVTESIEAVKMSKAAGWGVMTSHRSGETEDSFIADLAVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGDEAVYA 448 (457)
T ss_pred cccCCHHHHHHHHHHHHHCCCEEEeCCCCccchHHHHHHHHHHhCCCccccCCCcchHHHHHHHHHHHHHHHhcccceec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCC
Q 040341 241 GTKFRAP 247 (251)
Q Consensus 241 ~~~~~~~ 247 (251)
|..||.+
T Consensus 449 ~~~~~~~ 455 (457)
T PLN00191 449 GENFRKP 455 (457)
T ss_pred ccccccC
Confidence 9888874
No 7
>PRK00077 eno enolase; Provisional
Probab=100.00 E-value=8e-63 Score=468.47 Aligned_cols=234 Identities=52% Similarity=0.827 Sum_probs=222.5
Q ss_pred ChHHHHHHHhcCCCCCCCCCcccccCCCCCcHHHHHHHHHHHHhcCCc-c-ceeeeeehhhhcccccCCcceeecCCCCC
Q 040341 1 MFLQAVIKKKYGQDATNVGDEGGFAPNIQESYEGFELLKTAIAKGGYI-G-KIVIGMDVAASEFYDSKDKTYDLNFKEEN 78 (251)
Q Consensus 1 ~~lk~~l~~~~g~~~~~vgdeGGfap~~~~~eeal~~i~~Ai~~aGy~-~-kI~iglD~Aase~~~~~~g~Y~l~~~~~~ 78 (251)
|.||.+|++|+ ..++|||||||+|++++++++|++|.+||+++||+ + +|.|++|+|+|+||++ ++|+++
T Consensus 187 ~~lK~~l~~~g--~~~~vGdeGg~~p~~~~~~e~l~~lreAi~~ag~~~G~di~l~lD~aas~~~~~--~~y~~~----- 257 (425)
T PRK00077 187 HTLKKVLKEKG--LSTAVGDEGGFAPNLKSNEEALDLILEAIEKAGYKPGEDIALALDCAASEFYKD--GKYVLE----- 257 (425)
T ss_pred HHHHHHHHhcC--CCCcCCCcCCcCCCccchHHHHHHHHHHHHHhcCCCCCceEEEEehhhhhcccC--Ceeecc-----
Confidence 46899999883 67999999999999999999999999999999999 4 6999999999999965 889975
Q ss_pred CCCCCccChhhHHHHHHHhhhcCCceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEe
Q 040341 79 NDGSQKVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLL 158 (251)
Q Consensus 79 ~d~~~~~s~~elid~~~~l~~~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilI 158 (251)
++.+|++|++++|.+++++|||.+|||||+++||++|++|++++++++||||||+++||+.+++++++.++||+++|
T Consensus 258 ---~~~~s~~e~~~~~~~l~e~y~i~~iEdPl~~~D~~g~~~L~~~~~~~ipI~gdE~~~t~~~~~~~~i~~~a~d~v~i 334 (425)
T PRK00077 258 ---GEGLTSEEMIDYLAELVDKYPIVSIEDGLDENDWEGWKLLTEKLGDKVQLVGDDLFVTNTKRLKKGIEKGAANSILI 334 (425)
T ss_pred ---CCcCCHHHHHHHHHHHHhhCCcEEEEcCCCCccHHHHHHHHHhcCCCCeEEcCCCccCCHHHHHHHHHhCCCCEEEe
Confidence 35699999999999999999999999999999999999999999888999999998999999999999999999999
Q ss_pred eccccccHHHHHHHHHHHHHcCCcEEEecCCCCCCchhHhhhhhhcccCccccCCCCchhHHHHhhHHHHHHHHhCCCcc
Q 040341 159 KVNQIGSVTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGPAAI 238 (251)
Q Consensus 159 K~nqiGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d~~iadLAva~~~~~ik~G~~~r~Er~aKyN~llrie~~l~~~~~ 238 (251)
||+|+||+|++++++++|+.+|+.+|||||||||+|+++||||||++++|+|+|+|+|+||++||||||||||+|++.+.
T Consensus 335 k~~~~GGitea~~ia~lA~~~gi~~~vsh~sgEt~d~~~a~lava~~~~~ik~G~~~~~er~~k~n~ll~i~~~l~~~~~ 414 (425)
T PRK00077 335 KVNQIGTLTETLDAIELAKRAGYTAVVSHRSGETEDTTIADLAVATNAGQIKTGSLSRSERIAKYNQLLRIEEELGDAAR 414 (425)
T ss_pred CccccCCHHHHHHHHHHHHHcCCeEEEeCCCCcchHHHHHHHHHHhCCccccCCCCcchHHHHHHHHHHHHHHHhcccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC-ccccC
Q 040341 239 YAG-TKFRA 246 (251)
Q Consensus 239 ~~~-~~~~~ 246 (251)
|+| ..||.
T Consensus 415 ~~~~~~~~~ 423 (425)
T PRK00077 415 YAGKKAFKN 423 (425)
T ss_pred ecchhhccc
Confidence 999 57764
No 8
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=100.00 E-value=8.1e-63 Score=466.28 Aligned_cols=225 Identities=62% Similarity=0.962 Sum_probs=214.6
Q ss_pred ChHHHHHHHhcCCCCCCCCCcccccCCCCCcHHHHHHHHHHHHhcCCcc--ceeeeeehhhhcccccCCcceeecCCCCC
Q 040341 1 MFLQAVIKKKYGQDATNVGDEGGFAPNIQESYEGFELLKTAIAKGGYIG--KIVIGMDVAASEFYDSKDKTYDLNFKEEN 78 (251)
Q Consensus 1 ~~lk~~l~~~~g~~~~~vgdeGGfap~~~~~eeal~~i~~Ai~~aGy~~--kI~iglD~Aase~~~~~~g~Y~l~~~~~~ 78 (251)
|.||++|++|+|...++|||||||+|++++.+++|++|.+||+++||++ +|.|++|+|||+||++ ++|.+.+.
T Consensus 182 ~~lK~~l~~~~g~~~~~vgdeGg~~p~~~~d~~~l~~i~eAi~~~g~~~G~dv~i~lD~aas~~~~~--~~y~~~~~--- 256 (408)
T cd03313 182 HTLKKVLKKKGGLLATNVGDEGGFAPNLSSNEEALDLLVEAIEKAGYEPGKKIAIALDVAASEFYDE--GKYVYDSD--- 256 (408)
T ss_pred HHHHHHHHhhcCccccccccccCcCCCCCChHHHHHHHHHHHHHhcCCCCCeEEEEEehhhhhhccc--CcceeccC---
Confidence 5689999999887889999999999999999999999999999999995 7999999999999987 67876422
Q ss_pred CCCCCccChhhHHHHHHHhhhcCCceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEe
Q 040341 79 NDGSQKVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLL 158 (251)
Q Consensus 79 ~d~~~~~s~~elid~~~~l~~~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilI 158 (251)
.++.+|++|++++|.+|+++|||.+|||||+++||++|++|++++|.++||+|||++++|+++++++++.++||+++|
T Consensus 257 --~~~~~t~~eai~~~~~l~e~~~i~~iEdPl~~~D~eg~~~L~~~~g~~ipi~gdE~~~~~~~~~~~~i~~~a~d~v~i 334 (408)
T cd03313 257 --EGKKLTSEELIDYYKELVKKYPIVSIEDPFDEDDWEGWAKLTAKLGDKIQIVGDDLFVTNPERLKKGIEKKAANALLI 334 (408)
T ss_pred --CCcccCHHHHHHHHHHHHHhCCcEEEEeCCCCcCHHHHHHHHHhcCCCCeEEcCCcccCCHHHHHHHHHhCCCCEEEE
Confidence 367899999999999999999999999999999999999999999889999999998999999999999999999999
Q ss_pred eccccccHHHHHHHHHHHHHcCCcEEEecCCCCCCchhHhhhhhhcccCccccCCCCchhHHHHhhHHHHHHHH
Q 040341 159 KVNQIGSVTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEE 232 (251)
Q Consensus 159 K~nqiGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d~~iadLAva~~~~~ik~G~~~r~Er~aKyN~llrie~~ 232 (251)
||+|+||+|++++++++|+++|+.+|+|||||||+|+|+||||||++++|||+|+|+|+||++||||||||||+
T Consensus 335 k~~~iGGite~~~ia~lA~~~G~~~~~sh~sget~d~~~adlava~~~~~ik~G~~~r~er~~k~n~ll~i~~~ 408 (408)
T cd03313 335 KVNQIGTLTETIEAIKLAKKNGYGVVVSHRSGETEDTFIADLAVALGAGQIKTGAPCRSERTAKYNQLLRIEEE 408 (408)
T ss_pred cccccCCHHHHHHHHHHHHHcCCeEEccCCCchhHHHHHHHHHHHhCcCccccCCCcchHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999985
No 9
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=100.00 E-value=1.5e-61 Score=459.67 Aligned_cols=237 Identities=51% Similarity=0.813 Sum_probs=223.7
Q ss_pred ChHHHHHHHhcCCCCCCCCCcccccCCCCCcHHHHHHHHHHHHhcCCc-c-ceeeeeehhhhcccccCCcceeecCCCCC
Q 040341 1 MFLQAVIKKKYGQDATNVGDEGGFAPNIQESYEGFELLKTAIAKGGYI-G-KIVIGMDVAASEFYDSKDKTYDLNFKEEN 78 (251)
Q Consensus 1 ~~lk~~l~~~~g~~~~~vgdeGGfap~~~~~eeal~~i~~Ai~~aGy~-~-kI~iglD~Aase~~~~~~g~Y~l~~~~~~ 78 (251)
|.||.+|++|+ .+++|||||||+|++++++++|+++.+||+++||+ + +|.+++|+|+|+||+.++++|++. .
T Consensus 184 ~~lK~~l~~~~--~~~~vGdeGg~~p~~~~~~~~l~~~~~ai~~~~~~~G~di~l~lD~aas~~~~~~~~~y~~~--~-- 257 (425)
T TIGR01060 184 HALKKLLKEKG--LATGVGDEGGFAPNLASNEEALEIISEAIEKAGYKPGEDVALALDCAASEFYDEEDGKYVYK--G-- 257 (425)
T ss_pred HHHHHHHHhcC--CCCCCCcccccCCCccccHHHHHHHHHHHHHHhhccCCceEEEEEccccccccccCceeeec--C--
Confidence 46888898884 67999999999999999999999999999999999 4 699999999999998555899985 2
Q ss_pred CCCCCccChhhHHHHHHHhhhcCCceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEe
Q 040341 79 NDGSQKVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLL 158 (251)
Q Consensus 79 ~d~~~~~s~~elid~~~~l~~~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilI 158 (251)
+++.+|++|++++|++|+++|||++|||||+++||++|++|++++|+++||||||+++||+.+++++++.++||+++|
T Consensus 258 --~~~~~s~~eai~~~~~lle~~~i~~iEdPl~~~D~~~~~~L~~~~~~~ipI~gDE~~~t~~~~~~~~i~~~a~d~v~i 335 (425)
T TIGR01060 258 --ENKQLTSEEMIEYYKELVEKYPIVSIEDGLSEEDWEGWAELTKELGDKVQIVGDDLFVTNTEILREGIEMGVANSILI 335 (425)
T ss_pred --cccccCHHHHHHHHHHHHhcCCcEEEEcCCCcccHHHHHHHHHhcCCCCeEEeCCCcccCHHHHHHHHHhCCCCEEEe
Confidence 346689999999999989999999999999999999999999999989999999998999999999999999999999
Q ss_pred eccccccHHHHHHHHHHHHHcCCcEEEecCCCCCCchhHhhhhhhcccCccccCCCCchhHHHHhhHHHHHHHHhCCCcc
Q 040341 159 KVNQIGSVTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGPAAI 238 (251)
Q Consensus 159 K~nqiGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d~~iadLAva~~~~~ik~G~~~r~Er~aKyN~llrie~~l~~~~~ 238 (251)
||||+||+|++++++++|+++|+.+|++||||||+|+++||||||++++|+|+|+|+|+||++||||||||||+|+..+.
T Consensus 336 k~~~iGGItea~~ia~lA~~~Gi~~vv~h~sgEt~d~~~a~lava~~~~~ik~g~~~~~er~~kyn~ll~i~~~l~~~~~ 415 (425)
T TIGR01060 336 KPNQIGTLTETLDAVELAKKAGYTAVISHRSGETEDTTIADLAVALNAGQIKTGSLSRSERIAKYNQLLRIEEELGDSAR 415 (425)
T ss_pred cccccCCHHHHHHHHHHHHHcCCcEEEecCCcccHHHHHHHHHHHhCcCccccCCCchHHHHHHHHHHHHHHHHhcccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC-cccc
Q 040341 239 YAG-TKFR 245 (251)
Q Consensus 239 ~~~-~~~~ 245 (251)
|+| ..||
T Consensus 416 ~~~~~~~~ 423 (425)
T TIGR01060 416 YAGKNTFY 423 (425)
T ss_pred ecchhccC
Confidence 999 4665
No 10
>PRK08350 hypothetical protein; Provisional
Probab=100.00 E-value=4.9e-62 Score=443.39 Aligned_cols=177 Identities=23% Similarity=0.297 Sum_probs=166.5
Q ss_pred ChHHHHHHHhcCCCCCCCCCcccccCCCCCcHHHHHHHHHHHHhcCCcc--ceeeeeehhhhcccccCCcceeecCCCCC
Q 040341 1 MFLQAVIKKKYGQDATNVGDEGGFAPNIQESYEGFELLKTAIAKGGYIG--KIVIGMDVAASEFYDSKDKTYDLNFKEEN 78 (251)
Q Consensus 1 ~~lk~~l~~~~g~~~~~vgdeGGfap~~~~~eeal~~i~~Ai~~aGy~~--kI~iglD~Aase~~~~~~g~Y~l~~~~~~ 78 (251)
|+||++|++ ++++||++|.+||+++||++ +|.+|+|+.
T Consensus 157 ~~lk~il~~--------------------~~eeaL~ll~eAi~~aGy~~g~dv~~~lD~~-------------------- 196 (341)
T PRK08350 157 DAVNKILEN--------------------SKEVSLEGLSKASEKAGDELGLEVALGIAQK-------------------- 196 (341)
T ss_pred HHHHHHHhh--------------------ChHHHHHHHHHHHHHhCCCccccEEEeeccC--------------------
Confidence 789999997 78999999999999999994 599999981
Q ss_pred CCCCCccChhhHHHHHHHhhhcCCceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEe
Q 040341 79 NDGSQKVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLL 158 (251)
Q Consensus 79 ~d~~~~~s~~elid~~~~l~~~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilI 158 (251)
..+|++||+ +|+++|||+||| ||+|+ ++|++||++ |+++|||||||||||+++ ++++||++||
T Consensus 197 ----~~~t~~eli----~l~~kYPIvsIE-p~~E~--~gw~~lt~~-g~~iqiVGDDLfvTN~~~-----~~~~~NaiLi 259 (341)
T PRK08350 197 ----REMETEKVL----NLVEDNNIAYIK-PIGDE--ELFLELIAG-THGVFIDGEYLFRTRNIL-----DRRYYNALSI 259 (341)
T ss_pred ----CCCCHHHHH----HHHHHCCEEEEE-cCCcc--hHHHHHHhc-CCceEEEcccccccChhH-----hhCccceEEE
Confidence 126889998 799999999999 99977 999999999 899999999999999977 8899999999
Q ss_pred eccccccHHHHHHHHHHHHHcCCcEEEecCCCCCCchhHhhhhhhcccCccccCCCCchhHHHHhhHHHHHHHHhCCCcc
Q 040341 159 KVNQIGSVTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGPAAI 238 (251)
Q Consensus 159 K~nqiGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d~~iadLAva~~~~~ik~G~~~r~Er~aKyN~llrie~~l~~~~~ 238 (251)
|||||||||||++++++|+++||.+|||||||||+|+||||||||++++||| |||||++||||||||||+|++.++
T Consensus 260 K~NQIGTltEt~~ai~~A~~~g~~~vvSHRSGETeD~~IAdLaVa~~agqIK----~R~ER~aKyN~LlrIee~lg~~~~ 335 (341)
T PRK08350 260 KPINLGTLTDLYNLVNDVKSERITPILAEAKYESADEALPHLAVGLRCPAML----IHKDSVEKINELNRIAEDLGERGR 335 (341)
T ss_pred eeccceeHHHHHHHHHHHHHcCCeEEeecCCCCCcchhHHHHHHHhCCCccc----cchhHHHHHHHHHHHHHHcCCCeE
Confidence 9999999999999999999999999999999999999999999999999999 899999999999999999987764
No 11
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=99.84 E-value=1.2e-19 Score=171.78 Aligned_cols=195 Identities=17% Similarity=0.236 Sum_probs=152.0
Q ss_pred CCCcHHHHHHHHHHHHhcCCcc-ceeeeeehhh--------hcc---cccC--CcceeecCCCCCCCCCC------ccCh
Q 040341 28 IQESYEGFELLKTAIAKGGYIG-KIVIGMDVAA--------SEF---YDSK--DKTYDLNFKEENNDGSQ------KVSG 87 (251)
Q Consensus 28 ~~~~eeal~~i~~Ai~~aGy~~-kI~iglD~Aa--------se~---~~~~--~g~Y~l~~~~~~~d~~~------~~s~ 87 (251)
..++++.+....+.+...+|+. | ++|.|... .+. .... .-...+ |+|+ .+|+
T Consensus 176 ~~~~d~m~~~a~~~~~~G~~~~~K-kvG~~~~k~~~~~~~~~~ri~~lr~~g~~~~l~v-------DaN~~~~~~~~~~~ 247 (408)
T TIGR01502 176 YDNVDKMILKEVDVLPHGLINSVE-ELGLDGEKLLEYVKWLRDRIIKLGREGYAPIFHI-------DVYGTIGEAFGVDI 247 (408)
T ss_pred CCCHHHHHHHHHHHHhccCcccee-eecCCHHHhhhhHHHHHHHHHHhhccCCCCeEEE-------EcCCCcccccCCCH
Confidence 3456888888999885433775 6 47776420 111 1111 012333 4776 8999
Q ss_pred hhHHHHHHHhhh---cCCceeecCCCCccc----HHHHHHHHhhh---CCceEEEcccccccCHHHHHHHHhccCcceeE
Q 040341 88 DGLKNVYRSFIS---DHPIVSIEDPFDQDD----WEHHAELTGKI---GRHVQIVGDDLLVTNPKRVEKAIKEKTCNALL 157 (251)
Q Consensus 88 ~elid~~~~l~~---~ypI~~IEDP~~e~D----~~~~~~l~~~l---g~~~~ivgDdl~vtn~~~i~~~i~~~a~n~il 157 (251)
+++++++.+|-+ .|++ +||||++.+| +++|++|++++ +.++|||+|| +++|++++++.++.++|+.++
T Consensus 248 ~~ai~~l~~l~~~~~~~~~-~iEqPv~~~d~~~~~e~la~Lr~~~~~~~~~vPI~aDE-s~~t~~d~~~~i~~~a~d~v~ 325 (408)
T TIGR01502 248 KAMADYIQTLAEAAKPFHL-RIEGPMDVGSRQAQIEAMADLRAELDGRGVDAEIVADE-WCNTVEDVKFFTDAKAGHMVQ 325 (408)
T ss_pred HHHHHHHHHHHHhCccCCe-EEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecC-CCCCHHHHHHHHHhCCCCEEE
Confidence 999999999744 3776 9999998865 99999999884 3489999999 799999999999999999999
Q ss_pred eeccccccHHHHHHHHHHHHHcCCcEEEecCCCCCCchhH--hhhhhhcccCcc--ccCCCCchhH-HHHhhHHHHHHHH
Q 040341 158 LKVNQIGSVTESIEAVKMSKRAGWGVMASHRSGETEDTFI--ADLSVGLATGQI--KTGAPCRSER-LAKYNQLLRIEEE 232 (251)
Q Consensus 158 IK~nqiGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d~~i--adLAva~~~~~i--k~G~~~r~Er-~aKyN~llrie~~ 232 (251)
||++++|++|++++++.+|+++|+.+|++++.+||..+.. +|||.++.+.|+ |||- .--|. +..+|++.|.-..
T Consensus 326 iK~~k~GGIt~a~kia~lA~~~Gi~~~~g~~~~es~I~~aa~~Hlaaa~~~~~~l~kpg~-g~d~~~~~~~ne~~r~~~~ 404 (408)
T TIGR01502 326 IKTPDVGGVNNIARAIMYCKANGMGAYVGGTCNETNRSAEVTTHVGMATGARQVLAKPGM-GVDEGMMIVKNEMNRVLAL 404 (408)
T ss_pred eCccccCCHHHHHHHHHHHHHcCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEecCCC-CcchhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999889987654 499999998776 7773 22344 7788888887654
Q ss_pred h
Q 040341 233 L 233 (251)
Q Consensus 233 l 233 (251)
+
T Consensus 405 ~ 405 (408)
T TIGR01502 405 V 405 (408)
T ss_pred h
Confidence 3
No 12
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=99.80 E-value=1.8e-18 Score=159.34 Aligned_cols=172 Identities=16% Similarity=0.179 Sum_probs=142.0
Q ss_pred CCCcHHHHHHHHHHHHhcCCcc-ceeeee--ehh----hhcccccCCcceeecCCCCCCCCCCccChhhHHHHHHHhhhc
Q 040341 28 IQESYEGFELLKTAIAKGGYIG-KIVIGM--DVA----ASEFYDSKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISD 100 (251)
Q Consensus 28 ~~~~eeal~~i~~Ai~~aGy~~-kI~igl--D~A----ase~~~~~~g~Y~l~~~~~~~d~~~~~s~~elid~~~~l~~~ 100 (251)
+.++++.++.+.+.+ +.||+. ||+++. |++ .++.+++ -...+ |+|+.+|.++ +...++ +++
T Consensus 130 ~~~~~~~~~~a~~~~-~~Gf~~~KiKv~~~~d~~~v~~vr~~~~~--~~l~v-------DaN~~~~~~~-a~~~~~-l~~ 197 (324)
T TIGR01928 130 LANDEQMLKQIESLK-ATGYKRIKLKITPQIMHQLVKLRRLRFPQ--IPLVI-------DANESYDLQD-FPRLKE-LDR 197 (324)
T ss_pred CCCHHHHHHHHHHHH-HcCCcEEEEEeCCchhHHHHHHHHHhCCC--CcEEE-------ECCCCCCHHH-HHHHHH-Hhh
Confidence 356789999999977 679996 887753 332 2333322 23444 4899999988 455555 699
Q ss_pred CCceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeeccccccHHHHHHHHHHHHHcC
Q 040341 101 HPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAG 180 (251)
Q Consensus 101 ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqiGtlte~l~~~~~a~~~g 180 (251)
|++.+||||+..+|++++++|++++ +++|++|| ++.++.++++.++.++++.+++|+.++|++|++++++.+|+++|
T Consensus 198 ~~~~~iEeP~~~~~~~~~~~l~~~~--~~pia~dE-s~~~~~~~~~~~~~~~~dvi~~d~~~~GGit~~~~~~~~A~~~g 274 (324)
T TIGR01928 198 YQLLYIEEPFKIDDLSMLDELAKGT--ITPICLDE-SITSLDDARNLIELGNVKVINIKPGRLGGLTEVQKAIETCREHG 274 (324)
T ss_pred CCCcEEECCCChhHHHHHHHHHhhc--CCCEeeCC-CcCCHHHHHHHHHcCCCCEEEeCcchhcCHHHHHHHHHHHHHcC
Confidence 9999999999999999999999998 79999999 79999999999999999999999999999999999999999999
Q ss_pred CcEEEecCCCCCCchhHhhhhhhcccCccccCCCC
Q 040341 181 WGVMASHRSGETEDTFIADLSVGLATGQIKTGAPC 215 (251)
Q Consensus 181 ~~~ivs~rsgEt~d~~iadLAva~~~~~ik~G~~~ 215 (251)
+.+|+++.. ||.....|-+.++...+...+|...
T Consensus 275 i~~~~~~~~-es~i~~aa~~hla~~~~~~~~~~~~ 308 (324)
T TIGR01928 275 AKVWIGGML-ETGISRAFNVALASLGGNDYPGDVS 308 (324)
T ss_pred CeEEEcceE-cccHHHHHHHHHHhCCCCCCCCCCC
Confidence 999999764 8888777777777777777666543
No 13
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=99.79 E-value=2.1e-18 Score=160.06 Aligned_cols=172 Identities=18% Similarity=0.252 Sum_probs=138.5
Q ss_pred HHHHHHHHHHHHhcCCcc-ceeeee--ehhhhcccccCCcceeecCCCCCCCCCCccChhhHHHHHHHhhhcCCceeecC
Q 040341 32 YEGFELLKTAIAKGGYIG-KIVIGM--DVAASEFYDSKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHPIVSIED 108 (251)
Q Consensus 32 eeal~~i~~Ai~~aGy~~-kI~igl--D~Aase~~~~~~g~Y~l~~~~~~~d~~~~~s~~elid~~~~l~~~ypI~~IED 108 (251)
++.++.+.++. +.||+. ||+++. |++--+..++.-|...+. .|+|+.+|.++. .+.+. +++|+|.+|||
T Consensus 139 ~~~~~~~~~~~-~~Gf~~~KiKv~~~~d~~~l~~vr~~~g~~~l~-----lDaN~~~~~~~a-~~~~~-l~~~~i~~iEe 210 (354)
T cd03317 139 EQLLKQIERYL-EEGYKRIKLKIKPGWDVEPLKAVRERFPDIPLM-----ADANSAYTLADI-PLLKR-LDEYGLLMIEQ 210 (354)
T ss_pred HHHHHHHHHHH-HcCCcEEEEecChHHHHHHHHHHHHHCCCCeEE-----EECCCCCCHHHH-HHHHH-hhcCCccEEEC
Confidence 88899998877 689986 877753 342222222211212222 258999999885 56665 69999999999
Q ss_pred CCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeeccccccHHHHHHHHHHHHHcCCcEEEecC
Q 040341 109 PFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAGWGVMASHR 188 (251)
Q Consensus 109 P~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqiGtlte~l~~~~~a~~~g~~~ivs~r 188 (251)
|+..+|+++++.|++++ .+||++|| ++.++.+++..++.++++.+++||+++||+|++++++.+|+.+|+.+|+|++
T Consensus 211 P~~~~d~~~~~~l~~~~--~~pia~dE-s~~~~~~~~~~~~~~~~d~~~ik~~~~GGit~~~~i~~~A~~~gi~~~~g~~ 287 (354)
T cd03317 211 PLAADDLIDHAELQKLL--KTPICLDE-SIQSAEDARKAIELGACKIINIKPGRVGGLTEALKIHDLCQEHGIPVWCGGM 287 (354)
T ss_pred CCChhHHHHHHHHHhhc--CCCEEeCC-ccCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCcEEecCc
Confidence 99999999999999998 79999999 8999999999999999999999999999999999999999999999999976
Q ss_pred CCCCCchhHhhhhhhcccCccccCCCC
Q 040341 189 SGETEDTFIADLSVGLATGQIKTGAPC 215 (251)
Q Consensus 189 sgEt~d~~iadLAva~~~~~ik~G~~~ 215 (251)
.|+.....+.+.++.......++.+.
T Consensus 288 -~es~l~~~a~~hla~~~~~~~~~~~~ 313 (354)
T cd03317 288 -LESGIGRAHNVALASLPNFTYPGDIS 313 (354)
T ss_pred -ccchHHHHHHHHHHhCCCCCCccccC
Confidence 69988888887776555444445443
No 14
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=99.79 E-value=4e-18 Score=152.35 Aligned_cols=166 Identities=20% Similarity=0.273 Sum_probs=136.5
Q ss_pred CCCcHHHHHHHHHHHHhcCCcc-ceeeeeeh--------hhhcccccCCcceeecCCCCCCCCCCccChhhHHHHHHHhh
Q 040341 28 IQESYEGFELLKTAIAKGGYIG-KIVIGMDV--------AASEFYDSKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFI 98 (251)
Q Consensus 28 ~~~~eeal~~i~~Ai~~aGy~~-kI~iglD~--------Aase~~~~~~g~Y~l~~~~~~~d~~~~~s~~elid~~~~l~ 98 (251)
..++++..+.+.+++ +.||+. ||++|-+. +.++.+.+ +-...+ |+|+.+|.++.+.+.+. +
T Consensus 83 ~~~~~~~~~~~~~~~-~~G~~~~KiKvg~~~~~d~~~v~~vr~~~g~-~~~l~v-------Dan~~~~~~~a~~~~~~-l 152 (265)
T cd03315 83 LGEPAEVAEEARRAL-EAGFRTFKLKVGRDPARDVAVVAALREAVGD-DAELRV-------DANRGWTPKQAIRALRA-L 152 (265)
T ss_pred CCCHHHHHHHHHHHH-HCCCCEEEEecCCCHHHHHHHHHHHHHhcCC-CCEEEE-------eCCCCcCHHHHHHHHHH-H
Confidence 346788888888877 679996 99988553 22222221 123344 47899999999998887 5
Q ss_pred hcCCceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeeccccccHHHHHHHHHHHHH
Q 040341 99 SDHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKR 178 (251)
Q Consensus 99 ~~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqiGtlte~l~~~~~a~~ 178 (251)
++|+|.+||||+..+|++++++|++++ .+||++|| .+.++.++++.++.++++.+++||+++|++|++++++++|++
T Consensus 153 ~~~~i~~iEeP~~~~d~~~~~~l~~~~--~ipia~dE-~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~~~~~A~~ 229 (265)
T cd03315 153 EDLGLDYVEQPLPADDLEGRAALARAT--DTPIMADE-SAFTPHDAFRELALGAADAVNIKTAKTGGLTKAQRVLAVAEA 229 (265)
T ss_pred HhcCCCEEECCCCcccHHHHHHHHhhC--CCCEEECC-CCCCHHHHHHHHHhCCCCEEEEecccccCHHHHHHHHHHHHH
Confidence 899999999999999999999999998 79999999 789999999999999999999999999999999999999999
Q ss_pred cCCcEEEecCCCCCCchhHhhhhhhcccC
Q 040341 179 AGWGVMASHRSGETEDTFIADLSVGLATG 207 (251)
Q Consensus 179 ~g~~~ivs~rsgEt~d~~iadLAva~~~~ 207 (251)
+|+.+|++++ .||.....+.+.++...+
T Consensus 230 ~gi~~~~~~~-~~s~i~~~a~~hlaa~~~ 257 (265)
T cd03315 230 LGLPVMVGSM-IESGLGTLANAHLAAALR 257 (265)
T ss_pred cCCcEEecCc-cchHHHHHHHHHHHHhCC
Confidence 9999999976 478776666555554444
No 15
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=99.76 E-value=7.6e-18 Score=157.07 Aligned_cols=169 Identities=14% Similarity=0.199 Sum_probs=136.1
Q ss_pred CCcHHHHHHHHHHHHhcC-Ccc-ceeeee-----ehh----hhcccccCCcceeecCCCCCCCCCCccChhhHHHHHHHh
Q 040341 29 QESYEGFELLKTAIAKGG-YIG-KIVIGM-----DVA----ASEFYDSKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSF 97 (251)
Q Consensus 29 ~~~eeal~~i~~Ai~~aG-y~~-kI~igl-----D~A----ase~~~~~~g~Y~l~~~~~~~d~~~~~s~~elid~~~~l 97 (251)
.+.++.++.+.+++ +.| |+. ||++|- |++ .++.+.+ .-...+ |+|+.+|.++.+.+.+.
T Consensus 141 ~~~~~~~~~~~~~~-~~G~f~~~KiKvg~~~~~~d~~~v~avr~~~g~-~~~l~i-------DaN~~~~~~~A~~~~~~- 210 (365)
T cd03318 141 GDTERDIAEAEEML-EAGRHRRFKLKMGARPPADDLAHVEAIAKALGD-RASVRV-------DVNQAWDESTAIRALPR- 210 (365)
T ss_pred CCHHHHHHHHHHHH-hCCCceEEEEEeCCCChHHHHHHHHHHHHHcCC-CcEEEE-------ECCCCCCHHHHHHHHHH-
Confidence 34577778888877 678 996 899874 332 2333322 112333 58999999998887777
Q ss_pred hhcCCceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeeccccccHHHHHHHHHHHH
Q 040341 98 ISDHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSK 177 (251)
Q Consensus 98 ~~~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqiGtlte~l~~~~~a~ 177 (251)
+++|++.+||||+..+|++++++|+++. .++|++|| ++.++.++++.++.++++.+++||.++||+|++++++.+|+
T Consensus 211 l~~~~~~~iEeP~~~~~~~~~~~l~~~~--~~pia~dE-~~~~~~~~~~~i~~~~~d~~~~d~~~~GGit~~~~~~~~a~ 287 (365)
T cd03318 211 LEAAGVELIEQPVPRENLDGLARLRSRN--RVPIMADE-SVSGPADAFELARRGAADVFSLKIAKSGGLRRAQKVAAIAE 287 (365)
T ss_pred HHhcCcceeeCCCCcccHHHHHHHHhhc--CCCEEcCc-ccCCHHHHHHHHHhCCCCeEEEeecccCCHHHHHHHHHHHH
Confidence 5999999999999999999999999998 79999999 78999999999999999999999999999999999999999
Q ss_pred HcCCcEEEecCCCCCCchhHhhhhhhcccCcccc
Q 040341 178 RAGWGVMASHRSGETEDTFIADLSVGLATGQIKT 211 (251)
Q Consensus 178 ~~g~~~ivs~rsgEt~d~~iadLAva~~~~~ik~ 211 (251)
++|+.+|++++. |+.....+.+.++.....+..
T Consensus 288 ~~gi~~~~~~~~-~s~i~~aa~~hlaaa~~~~~~ 320 (365)
T cd03318 288 AAGIALYGGTML-ESSIGTAASAHLFATLPSLPF 320 (365)
T ss_pred HcCCceeecCcc-hhHHHHHHHHHHHHhCCCCcc
Confidence 999999998764 877766665555554444433
No 16
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=99.76 E-value=6.5e-18 Score=158.27 Aligned_cols=131 Identities=19% Similarity=0.294 Sum_probs=114.6
Q ss_pred CCCCc----c--ChhhHHHHHHHhhhcCC--ceeecCCCCccc----HHHHHHHHhhh---CCceEEEcccccccCHHHH
Q 040341 80 DGSQK----V--SGDGLKNVYRSFISDHP--IVSIEDPFDQDD----WEHHAELTGKI---GRHVQIVGDDLLVTNPKRV 144 (251)
Q Consensus 80 d~~~~----~--s~~elid~~~~l~~~yp--I~~IEDP~~e~D----~~~~~~l~~~l---g~~~~ivgDdl~vtn~~~i 144 (251)
|+|+. + |+++.+++...|-+.|+ +.+|||||..+| ++++++|++++ +..+||++|| +++++.++
T Consensus 198 DaN~~w~~~~~~~~~~A~~~~~~Le~~~~~~~~~iEqP~~~~d~~~~~~~~a~Lr~~~~~~~~~iPIa~dE-s~~t~~d~ 276 (369)
T cd03314 198 DVYGTIGQAFDPDPDRAADYLATLEEAAAPFPLRIEGPMDAGSREAQIERMAALRAELDRRGVGVRIVADE-WCNTLEDI 276 (369)
T ss_pred EcCCccccccCCCHHHHHHHHHHHHHhcCCCcEEEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecC-CcCCHHHH
Confidence 46764 7 99999999888633334 779999999865 89999999884 2379999999 78999999
Q ss_pred HHHHhccCcceeEeeccccccHHHHHHHHHHHHHcCCcEEEecCCCCCCch--hHhhhhhhcccCcccc
Q 040341 145 EKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAGWGVMASHRSGETEDT--FIADLSVGLATGQIKT 211 (251)
Q Consensus 145 ~~~i~~~a~n~ilIK~nqiGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d~--~iadLAva~~~~~ik~ 211 (251)
++.++.++++.+++|++++|++|++++++.+|+.+|+.++++++++||... ..+||+.++.+.|+..
T Consensus 277 ~~li~~~a~div~~kl~k~GGIt~a~kia~lA~a~Gi~~~~h~~~~es~I~~aa~lHlaaa~~~~~~~~ 345 (369)
T cd03314 277 RDFADAGAAHMVQIKTPDLGGIDNTIDAVLYCKEHGVGAYLGGSCNETDISARVTVHVALATRADQMLA 345 (369)
T ss_pred HHHHHhCCCCEEEecchhcCCHHHHHHHHHHHHHcCCcEEEeCCCCCchHHHHHHHHHHHhcCCcceee
Confidence 999999999999999999999999999999999999999999998999987 4559999999988743
No 17
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=99.76 E-value=2.1e-17 Score=154.41 Aligned_cols=168 Identities=20% Similarity=0.206 Sum_probs=135.4
Q ss_pred CCcHHHHHHHHHHHHhcCCcc-ceeeee-e----h----hhhcccccCCcceeecCCCCCCCCCCccChhhHHHHHHHhh
Q 040341 29 QESYEGFELLKTAIAKGGYIG-KIVIGM-D----V----AASEFYDSKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFI 98 (251)
Q Consensus 29 ~~~eeal~~i~~Ai~~aGy~~-kI~igl-D----~----Aase~~~~~~g~Y~l~~~~~~~d~~~~~s~~elid~~~~l~ 98 (251)
.++++.++.+.+.+++.||+. ||++|- | + +.++.+.+ .-.+.+ |+|+.+|+++.+.+.+. +
T Consensus 140 ~~~~~~~~~~~~~~~~~Gf~~~KiKvg~~~~~~d~~~v~~~re~~g~-~~~l~~-------DaN~~~~~~~A~~~~~~-l 210 (368)
T TIGR02534 140 GDTDRDIAEAEERIEEKRHRSFKLKIGARDPADDVAHVVAIAKALGD-RASVRV-------DVNAAWDERTALHYLPQ-L 210 (368)
T ss_pred CCHHHHHHHHHHHHHhcCcceEEEEeCCCCcHHHHHHHHHHHHhcCC-CcEEEE-------ECCCCCCHHHHHHHHHH-H
Confidence 344566777777776789997 999874 2 2 22333322 123444 48999999999888777 5
Q ss_pred hcCCceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeeccccccHHHHHHHHHHHHH
Q 040341 99 SDHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKR 178 (251)
Q Consensus 99 ~~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqiGtlte~l~~~~~a~~ 178 (251)
++|++.+||||+..+|++++++|+++. .++|+.|| +++++.++.+.+..++++.+++||.++|++|++++++.+|+.
T Consensus 211 ~~~~~~~iEeP~~~~d~~~~~~l~~~~--~~pia~dE-~~~~~~~~~~~~~~~~~d~~~~d~~~~GGi~~~~~i~~lA~~ 287 (368)
T TIGR02534 211 ADAGVELIEQPTPAENREALARLTRRF--NVPIMADE-SVTGPADALAIAKASAADVFALKTTKSGGLLESKKIAAIAEA 287 (368)
T ss_pred HhcChhheECCCCcccHHHHHHHHHhC--CCCEEeCc-ccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999998 79999999 789999999999999999999999999999999999999999
Q ss_pred cCCcEEEecCCCCCCchhHhhhhhhcccCcc
Q 040341 179 AGWGVMASHRSGETEDTFIADLSVGLATGQI 209 (251)
Q Consensus 179 ~g~~~ivs~rsgEt~d~~iadLAva~~~~~i 209 (251)
+|+.+|+++. .|+.....+.+.++.....+
T Consensus 288 ~gi~~~~~~~-~~s~i~~aa~~h~~a~~~~~ 317 (368)
T TIGR02534 288 AGIALYGGTM-LEGPIGTIASAHFFATFPAL 317 (368)
T ss_pred cCCceeeecc-hhhHHHHHHHHHHHHhCCCC
Confidence 9999998865 37777666655555444443
No 18
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=99.75 E-value=2.3e-17 Score=150.95 Aligned_cols=166 Identities=19% Similarity=0.221 Sum_probs=135.3
Q ss_pred CCCcHHHHHHHHHHHHhcCCcc-ceeeeeehhh----hcccccCCcceeecCCCCCCCCCCccChhhHHHHHHHhhhcCC
Q 040341 28 IQESYEGFELLKTAIAKGGYIG-KIVIGMDVAA----SEFYDSKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHP 102 (251)
Q Consensus 28 ~~~~eeal~~i~~Ai~~aGy~~-kI~iglD~Aa----se~~~~~~g~Y~l~~~~~~~d~~~~~s~~elid~~~~l~~~yp 102 (251)
..++++.++.+.++. +.||+. ||++|.+... -+...+.-|...+. .|+|+.++.++.+++.+. +++|+
T Consensus 132 ~~~~~~~~~~~~~~~-~~Gf~~iKik~g~~~~~d~~~v~~lr~~~g~~~l~-----vD~n~~~~~~~A~~~~~~-l~~~~ 204 (316)
T cd03319 132 IDTPEAMAAAAKKAA-KRGFPLLKIKLGGDLEDDIERIRAIREAAPDARLR-----VDANQGWTPEEAVELLRE-LAELG 204 (316)
T ss_pred CCCHHHHHHHHHHHH-HcCCCEEEEEeCCChhhHHHHHHHHHHhCCCCeEE-----EeCCCCcCHHHHHHHHHH-HHhcC
Confidence 356788889999887 689996 8988865411 11111111222232 257899999999888887 58999
Q ss_pred ceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeeccccccHHHHHHHHHHHHHcCCc
Q 040341 103 IVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAGWG 182 (251)
Q Consensus 103 I~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqiGtlte~l~~~~~a~~~g~~ 182 (251)
+.+||||+..+||+++++|++.+ ++||++|| .+.++.++++.++.++++.+.+||.++||+|++++++.+|+++|+.
T Consensus 205 l~~iEeP~~~~d~~~~~~L~~~~--~ipIa~~E-~~~~~~~~~~~~~~~~~d~v~~~~~~~GGi~~~~~~~~~a~~~gi~ 281 (316)
T cd03319 205 VELIEQPVPAGDDDGLAYLRDKS--PLPIMADE-SCFSAADAARLAGGGAYDGINIKLMKTGGLTEALRIADLARAAGLK 281 (316)
T ss_pred CCEEECCCCCCCHHHHHHHHhcC--CCCEEEeC-CCCCHHHHHHHHhcCCCCEEEEeccccCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999998 79999999 7999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCchhHhhhhhhc
Q 040341 183 VMASHRSGETEDTFIADLSVGL 204 (251)
Q Consensus 183 ~ivs~rsgEt~d~~iadLAva~ 204 (251)
++++.+. |+.-.+.+-+.++.
T Consensus 282 ~~~~~~~-~~~i~~~a~~hl~a 302 (316)
T cd03319 282 VMVGCMV-ESSLSIAAAAHLAA 302 (316)
T ss_pred EEEECch-hhHHHHHHHHHHHh
Confidence 9999764 88777766554443
No 19
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=99.75 E-value=1.1e-17 Score=156.29 Aligned_cols=162 Identities=13% Similarity=0.166 Sum_probs=132.3
Q ss_pred CcHHHHHHHHHHHHhcCCcc-ceee-eeehhhhcccccCCcceeecCCCCCCCCCCccChhhHHHHHHHhhhcCCceeec
Q 040341 30 ESYEGFELLKTAIAKGGYIG-KIVI-GMDVAASEFYDSKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHPIVSIE 107 (251)
Q Consensus 30 ~~eeal~~i~~Ai~~aGy~~-kI~i-glD~Aase~~~~~~g~Y~l~~~~~~~d~~~~~s~~elid~~~~l~~~ypI~~IE 107 (251)
++++.++.+.++. +.||+. ||++ ..=-+.++.+.+ ...+. .|+|+.+|.++.+.+.+. +++|++.+||
T Consensus 126 ~~~~~~~~a~~~~-~~Gf~~~KiKv~~~v~avre~~G~---~~~l~-----vDaN~~w~~~~A~~~~~~-l~~~~l~~iE 195 (361)
T cd03322 126 DIPELLEAVERHL-AQGYRAIRVQLPKLFEAVREKFGF---EFHLL-----HDVHHRLTPNQAARFGKD-VEPYRLFWME 195 (361)
T ss_pred CHHHHHHHHHHHH-HcCCCeEeeCHHHHHHHHHhccCC---CceEE-----EECCCCCCHHHHHHHHHH-hhhcCCCEEE
Confidence 4577788888877 689996 8875 111133444432 12222 258999999999888887 5999999999
Q ss_pred CCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeeccccccHHHHHHHHHHHHHcCCcEEEec
Q 040341 108 DPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAGWGVMASH 187 (251)
Q Consensus 108 DP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqiGtlte~l~~~~~a~~~g~~~ivs~ 187 (251)
||+..+|+++++.|++++ .++|++|| +++++.+.++.+..++++.+++|+.++||+|++++++++|+++|+.+++++
T Consensus 196 eP~~~~d~~~~~~L~~~~--~~pia~gE-~~~~~~~~~~~i~~~a~di~~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~ 272 (361)
T cd03322 196 DPTPAENQEAFRLIRQHT--ATPLAVGE-VFNSIWDWQNLIQERLIDYIRTTVSHAGGITPARKIADLASLYGVRTGWHG 272 (361)
T ss_pred CCCCcccHHHHHHHHhcC--CCCEEecc-CCcCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCeeeccC
Confidence 999999999999999998 79999999 789999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCchhHhhhhhhc
Q 040341 188 RSGETEDTFIADLSVGL 204 (251)
Q Consensus 188 rsgEt~d~~iadLAva~ 204 (251)
...++.-...+.+.++.
T Consensus 273 ~~~~s~i~~aa~~~laa 289 (361)
T cd03322 273 PTDLSPVGMAAALHLDL 289 (361)
T ss_pred CCCcchHHHHHHHHHHh
Confidence 65567666655555543
No 20
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=99.75 E-value=2.1e-17 Score=153.76 Aligned_cols=162 Identities=15% Similarity=0.186 Sum_probs=132.0
Q ss_pred CCcHHHHHHHHHHHHhcCCcc-ceeeee-------------eh----hhhcccccCCcceeecCCCCCCCCCCccChhhH
Q 040341 29 QESYEGFELLKTAIAKGGYIG-KIVIGM-------------DV----AASEFYDSKDKTYDLNFKEENNDGSQKVSGDGL 90 (251)
Q Consensus 29 ~~~eeal~~i~~Ai~~aGy~~-kI~igl-------------D~----Aase~~~~~~g~Y~l~~~~~~~d~~~~~s~~el 90 (251)
.++++..+.+.++. +.||+. ||++|- |+ +.++.+.+ .-...+ |+|+.+|.++.
T Consensus 122 ~~~~~~~~~~~~~~-~~Gf~~~KiKvg~~~~~~~~~~~~~~D~~~i~avr~~~g~-~~~l~v-------DaN~~~~~~~A 192 (352)
T cd03325 122 DRPSDVAEAARARR-EAGFTAVKMNATEELQWIDTSKKVDAAVERVAALREAVGP-DIDIGV-------DFHGRVSKPMA 192 (352)
T ss_pred CCHHHHHHHHHHHH-HcCCCEEEecCCCCcccCCCHHHHHHHHHHHHHHHHhhCC-CCEEEE-------ECCCCCCHHHH
Confidence 46788888888876 689996 898873 23 22333321 123344 48999999999
Q ss_pred HHHHHHhhhcCCceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeeccccccHHHHH
Q 040341 91 KNVYRSFISDHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESI 170 (251)
Q Consensus 91 id~~~~l~~~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqiGtlte~l 170 (251)
+.+.+. +++|+|.+||||+..+|++++++|++++ .++|++|| ++.++.++...++.++++.+++||.++|++|+++
T Consensus 193 ~~~~~~-l~~~~i~~iEeP~~~~d~~~~~~L~~~~--~~pia~dE-s~~~~~~~~~~~~~~~~d~v~~d~~~~GGit~~~ 268 (352)
T cd03325 193 KDLAKE-LEPYRLLFIEEPVLPENVEALAEIAART--TIPIATGE-RLFSRWDFKELLEDGAVDIIQPDISHAGGITELK 268 (352)
T ss_pred HHHHHh-ccccCCcEEECCCCccCHHHHHHHHHhC--CCCEEecc-cccCHHHHHHHHHhCCCCEEecCccccCCHHHHH
Confidence 888887 5999999999999999999999999998 79999999 7899999999999999999999999999999999
Q ss_pred HHHHHHHHcCCcEEEecCCCCCCchhHhhhhhhcc
Q 040341 171 EAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLA 205 (251)
Q Consensus 171 ~~~~~a~~~g~~~ivs~rsgEt~d~~iadLAva~~ 205 (251)
+++++|+++|+.+|+++. ++.....+.+.++..
T Consensus 269 ~~~~lA~~~gi~~~~h~~--~s~i~~~a~~hlaa~ 301 (352)
T cd03325 269 KIAAMAEAYDVALAPHCP--LGPIALAASLHVDAS 301 (352)
T ss_pred HHHHHHHHcCCcEeccCC--CChHHHHHHHHHHHh
Confidence 999999999999997664 666665555555443
No 21
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=99.75 E-value=1.5e-17 Score=154.23 Aligned_cols=160 Identities=19% Similarity=0.214 Sum_probs=131.0
Q ss_pred CcHHHHHHHHHHHHhcCCcc-ceeeeee----------h----hhhcccccCCcceeecCCCCCCCCCCccChhhHHHHH
Q 040341 30 ESYEGFELLKTAIAKGGYIG-KIVIGMD----------V----AASEFYDSKDKTYDLNFKEENNDGSQKVSGDGLKNVY 94 (251)
Q Consensus 30 ~~eeal~~i~~Ai~~aGy~~-kI~iglD----------~----Aase~~~~~~g~Y~l~~~~~~~d~~~~~s~~elid~~ 94 (251)
++++..+.+.++. ++||+. ||++|-+ + +.++.+.+ .+.+. .|+|+.+|.++.+++.
T Consensus 139 ~~~~~~~~a~~~~-~~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir~~~g~---~~~l~-----vDaN~~~~~~~a~~~~ 209 (357)
T cd03316 139 SPEELAEEAKRAV-AEGFTAVKLKVGGPDSGGEDLREDLARVRAVREAVGP---DVDLM-----VDANGRWDLAEAIRLA 209 (357)
T ss_pred CHHHHHHHHHHHH-HcCCCEEEEcCCCCCcchHHHHHHHHHHHHHHHhhCC---CCEEE-----EECCCCCCHHHHHHHH
Confidence 5788888888877 699997 8888753 2 22333321 23232 2478999999999988
Q ss_pred HHhhhcCCceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeeccccccHHHHHHHHH
Q 040341 95 RSFISDHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVK 174 (251)
Q Consensus 95 ~~l~~~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqiGtlte~l~~~~ 174 (251)
+. +++|++.+||||+..+|++.++.|++++ .++|++|| ++++++++++.++.++++.+++|+.++|++++++++++
T Consensus 210 ~~-l~~~~i~~iEqP~~~~~~~~~~~l~~~~--~ipi~~dE-~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~i~~ 285 (357)
T cd03316 210 RA-LEEYDLFWFEEPVPPDDLEGLARLRQAT--SVPIAAGE-NLYTRWEFRDLLEAGAVDIIQPDVTKVGGITEAKKIAA 285 (357)
T ss_pred HH-hCccCCCeEcCCCCccCHHHHHHHHHhC--CCCEEecc-ccccHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHH
Confidence 77 5999999999999999999999999998 79999999 78999999999999999999999999999999999999
Q ss_pred HHHHcCCcEEEecCCCCCCch--hHhhhhhhc
Q 040341 175 MSKRAGWGVMASHRSGETEDT--FIADLSVGL 204 (251)
Q Consensus 175 ~a~~~g~~~ivs~rsgEt~d~--~iadLAva~ 204 (251)
+|+++|+++|++++. + ... ..+|||.++
T Consensus 286 ~a~~~g~~~~~~~~~-~-~i~~aa~~hla~a~ 315 (357)
T cd03316 286 LAEAHGVRVAPHGAG-G-PIGLAASLHLAAAL 315 (357)
T ss_pred HHHHcCCeEeccCCC-C-HHHHHHHHHHHHhC
Confidence 999999999999863 3 343 444555554
No 22
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=99.74 E-value=1.5e-17 Score=145.74 Aligned_cols=120 Identities=23% Similarity=0.281 Sum_probs=106.8
Q ss_pred CCCCccChhhHHHHHHHhhhcCCceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEee
Q 040341 80 DGSQKVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 159 (251)
Q Consensus 80 d~~~~~s~~elid~~~~l~~~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK 159 (251)
|+|+.+|.++.+++.+. +++|++.+|||||..+|++++++|+++. .++|++|| +++++.++.+.++.++++.+++|
T Consensus 100 DaN~~~~~~~a~~~~~~-l~~~~i~~iEeP~~~~d~~~~~~L~~~~--~~pIa~dE-s~~~~~~~~~~~~~~~~d~~~~k 175 (229)
T cd00308 100 DANGAWTPKEAIRLIRA-LEKYGLAWIEEPCAPDDLEGYAALRRRT--GIPIAADE-SVTTVDDALEALELGAVDILQIK 175 (229)
T ss_pred ECCCCCCHHHHHHHHHH-hhhcCCCeEECCCCccCHHHHHHHHhhC--CCCEEeCC-CCCCHHHHHHHHHcCCCCEEecC
Confidence 47888999999998888 5889999999999999999999999998 79999999 78999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHHcCCcEEEecCCCCCCchhH--hhhhhhc
Q 040341 160 VNQIGSVTESIEAVKMSKRAGWGVMASHRSGETEDTFI--ADLSVGL 204 (251)
Q Consensus 160 ~nqiGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d~~i--adLAva~ 204 (251)
|+++|++|++++++++|+++|+.+|++++ .||.-... +|||.++
T Consensus 176 ~~~~GGi~~~~~i~~~a~~~gi~~~~~~~-~~s~i~~~a~~hlaa~~ 221 (229)
T cd00308 176 PTRVGGLTESRRAADLAEAFGIRVMVHGT-LESSIGTAAALHLAAAL 221 (229)
T ss_pred ccccCCHHHHHHHHHHHHHcCCEEeecCC-CCCHHHHHHHHHHHHhC
Confidence 99999999999999999999999999987 46655444 4555444
No 23
>PRK15129 L-Ala-D/L-Glu epimerase; Provisional
Probab=99.74 E-value=3.5e-17 Score=150.57 Aligned_cols=157 Identities=14% Similarity=0.166 Sum_probs=126.2
Q ss_pred CCCCcHHHHHHHHHHHHhcCCcc-ceeeeee--h----hhhcccccCCcceeecCCCCCCCCCCccChhhHHHHHHHhhh
Q 040341 27 NIQESYEGFELLKTAIAKGGYIG-KIVIGMD--V----AASEFYDSKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFIS 99 (251)
Q Consensus 27 ~~~~~eeal~~i~~Ai~~aGy~~-kI~iglD--~----Aase~~~~~~g~Y~l~~~~~~~d~~~~~s~~elid~~~~l~~ 99 (251)
.+.++++.++.+.+++ +.||+. ||+++.+ + +.++.+++ -...+| +|+.+|.++.+.+.+. ++
T Consensus 126 ~~~~~~~~~~~~~~~~-~~G~~~~KlKv~~~~d~~~v~avr~~~~~--~~l~vD-------aN~~w~~~~A~~~~~~-l~ 194 (321)
T PRK15129 126 VIGTPEQMANSASALW-QAGAKLLKVKLDNHLISERMVAIRSAVPD--ATLIVD-------ANESWRAEGLAARCQL-LA 194 (321)
T ss_pred cCCCHHHHHHHHHHHH-HcCCCEEEEeCCCchHHHHHHHHHHhCCC--CeEEEE-------CCCCCCHHHHHHHHHH-HH
Confidence 3567788999999887 689996 8887644 2 22333321 244554 8999999998887777 59
Q ss_pred cCCceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeeccccccHHHHHHHHHHHHHc
Q 040341 100 DHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRA 179 (251)
Q Consensus 100 ~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqiGtlte~l~~~~~a~~~ 179 (251)
+|+|.+|||||..+|+.+++.+. . ++||+.|| ++.++.++.+.+ ++++.+++||+++||++++++++++|+++
T Consensus 195 ~~~i~~iEqP~~~~~~~~l~~~~--~--~~pia~dE-s~~~~~d~~~~~--~~~d~v~~k~~~~GGi~~a~~i~~~a~~~ 267 (321)
T PRK15129 195 DLGVAMLEQPLPAQDDAALENFI--H--PLPICADE-SCHTRSSLKALK--GRYEMVNIKLDKTGGLTEALALATEARAQ 267 (321)
T ss_pred hcCceEEECCCCCCcHHHHHHhc--c--CCCEecCC-CCCCHHHHHHHH--hhCCEEEeCchhhCCHHHHHHHHHHHHHc
Confidence 99999999999999999988654 2 69999999 789999998874 79999999999999999999999999999
Q ss_pred CCcEEEecCCCCCCchhHhhhhh
Q 040341 180 GWGVMASHRSGETEDTFIADLSV 202 (251)
Q Consensus 180 g~~~ivs~rsgEt~d~~iadLAv 202 (251)
|+.+|++++ .||.-...+-+++
T Consensus 268 gi~~~~g~~-~es~i~~~a~~~l 289 (321)
T PRK15129 268 GFALMLGCM-LCTSRAISAALPL 289 (321)
T ss_pred CCcEEEecc-hHHHHHHHHHHHH
Confidence 999999997 4775555444444
No 24
>PRK14017 galactonate dehydratase; Provisional
Probab=99.73 E-value=4.8e-17 Score=152.85 Aligned_cols=161 Identities=14% Similarity=0.140 Sum_probs=131.6
Q ss_pred CCcHHHHHHHHHHHHhcCCcc-ceeeee-------------eh----hhhcccccCCcceeecCCCCCCCCCCccChhhH
Q 040341 29 QESYEGFELLKTAIAKGGYIG-KIVIGM-------------DV----AASEFYDSKDKTYDLNFKEENNDGSQKVSGDGL 90 (251)
Q Consensus 29 ~~~eeal~~i~~Ai~~aGy~~-kI~igl-------------D~----Aase~~~~~~g~Y~l~~~~~~~d~~~~~s~~el 90 (251)
.++++.++.+.+++ +.||+. ||+++- |+ +.++.+.+ .-...+ |+|+.+|.++.
T Consensus 123 ~~~~~~~~~a~~~~-~~Gf~~~KiKv~~~~~~~~~~~~~~~d~~~i~avr~~~g~-~~~l~v-------DaN~~w~~~~A 193 (382)
T PRK14017 123 DRPADVAEAARARV-ERGFTAVKMNGTEELQYIDSPRKVDAAVARVAAVREAVGP-EIGIGV-------DFHGRVHKPMA 193 (382)
T ss_pred CCHHHHHHHHHHHH-HcCCCEEEEcCcCCccccccHHHHHHHHHHHHHHHHHhCC-CCeEEE-------ECCCCCCHHHH
Confidence 46788889999987 689997 887642 22 22333322 113344 48999999999
Q ss_pred HHHHHHhhhcCCceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeeccccccHHHHH
Q 040341 91 KNVYRSFISDHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESI 170 (251)
Q Consensus 91 id~~~~l~~~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqiGtlte~l 170 (251)
+.+.+. +++|++.+||||+..+|++++++|++++ .++|++|| ++.++.+++..++.++++.+++|++++|++|+++
T Consensus 194 ~~~~~~-l~~~~~~~iEeP~~~~d~~~~~~L~~~~--~~pIa~dE-s~~~~~~~~~li~~~a~d~v~~d~~~~GGit~~~ 269 (382)
T PRK14017 194 KVLAKE-LEPYRPMFIEEPVLPENAEALPEIAAQT--SIPIATGE-RLFSRWDFKRVLEAGGVDIIQPDLSHAGGITECR 269 (382)
T ss_pred HHHHHh-hcccCCCeEECCCCcCCHHHHHHHHhcC--CCCEEeCC-ccCCHHHHHHHHHcCCCCeEecCccccCCHHHHH
Confidence 888887 5999999999999999999999999998 79999999 7999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCcEEEecCCCCCCchhHhhhhhhc
Q 040341 171 EAVKMSKRAGWGVMASHRSGETEDTFIADLSVGL 204 (251)
Q Consensus 171 ~~~~~a~~~g~~~ivs~rsgEt~d~~iadLAva~ 204 (251)
+++++|+++|+.+|++++. + .....+.+.++.
T Consensus 270 ~ia~~A~~~gi~~~~h~~~-~-~i~~aa~~hl~a 301 (382)
T PRK14017 270 KIAAMAEAYDVALAPHCPL-G-PIALAACLQVDA 301 (382)
T ss_pred HHHHHHHHcCCeEeecCCC-C-HHHHHHHHHHHH
Confidence 9999999999999998763 3 345445554433
No 25
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=99.72 E-value=3.2e-17 Score=146.72 Aligned_cols=156 Identities=21% Similarity=0.203 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHhcCCcc-ceeeeee-----h----hhhcccccCCcceeecCCCCCCCCCCccChhhHHHHHHHhhhcCC
Q 040341 33 EGFELLKTAIAKGGYIG-KIVIGMD-----V----AASEFYDSKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHP 102 (251)
Q Consensus 33 eal~~i~~Ai~~aGy~~-kI~iglD-----~----Aase~~~~~~g~Y~l~~~~~~~d~~~~~s~~elid~~~~l~~~yp 102 (251)
+.++.+.+++ +.||+. ||++|-+ + +.++.+.+ +-...+ |+|+.+|.++.+.+... +++|+
T Consensus 85 ~~~~~~~~~~-~~Gf~~~KiKvg~~~~~~d~~~v~~vr~~~g~-~~~l~v-------DaN~~w~~~~A~~~~~~-l~~~~ 154 (263)
T cd03320 85 AALGEAKAAY-GGGYRTVKLKVGATSFEEDLARLRALREALPA-DAKLRL-------DANGGWSLEEALAFLEA-LAAGR 154 (263)
T ss_pred HHHHHHHHHH-hCCCCEEEEEECCCChHHHHHHHHHHHHHcCC-CCeEEE-------eCCCCCCHHHHHHHHHh-hcccC
Confidence 5567777766 679996 8988742 2 22222221 123333 58999999998887777 58999
Q ss_pred ceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeeccccccHHHHHHHHHHHHHcCCc
Q 040341 103 IVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAGWG 182 (251)
Q Consensus 103 I~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqiGtlte~l~~~~~a~~~g~~ 182 (251)
|.+||||+..+|+++++.++ + .+||+.|| ++.++.++...++.++++.+++||.++||+|++++++++|+.+|+.
T Consensus 155 i~~iEqP~~~~d~~~~~~l~--~--~~PIa~dE-s~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~a~~~gi~ 229 (263)
T cd03320 155 IEYIEQPLPPDDLAELRRLA--A--GVPIALDE-SLRRLDDPLALAAAGALGALVLKPALLGGPRALLELAEEARARGIP 229 (263)
T ss_pred CceEECCCChHHHHHHHHhh--c--CCCeeeCC-ccccccCHHHHHhcCCCCEEEECchhcCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999998 5 79999999 7889999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCchhHhhhhhhc
Q 040341 183 VMASHRSGETEDTFIADLSVGL 204 (251)
Q Consensus 183 ~ivs~rsgEt~d~~iadLAva~ 204 (251)
+|++++ .|+.....+-+.++.
T Consensus 230 ~~~~~~-~es~ig~aa~~hlaa 250 (263)
T cd03320 230 AVVSSA-LESSIGLGALAHLAA 250 (263)
T ss_pred EEEEcc-hhhHHHHHHHHHHHH
Confidence 999965 588776655444433
No 26
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=99.72 E-value=5.1e-17 Score=151.24 Aligned_cols=160 Identities=20% Similarity=0.250 Sum_probs=129.8
Q ss_pred CCCcHHHHHHHHHHHHhcCCcc-ceeeee-----eh----hhhcccccCCcceeecCCCCCCCCCCccChhhHHHHHHHh
Q 040341 28 IQESYEGFELLKTAIAKGGYIG-KIVIGM-----DV----AASEFYDSKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSF 97 (251)
Q Consensus 28 ~~~~eeal~~i~~Ai~~aGy~~-kI~igl-----D~----Aase~~~~~~g~Y~l~~~~~~~d~~~~~s~~elid~~~~l 97 (251)
..++++.++.+.+.+ +.||+. ||++|- |+ +.++.+.+ +-...+ |+|+.+|.++.+.+.+.|
T Consensus 139 ~~~~~~~~~~a~~~~-~~Gf~~~KiKvg~~~~~~d~~~v~air~~~g~-~~~l~v-------DaN~~~~~~~A~~~~~~l 209 (355)
T cd03321 139 LDGAKLATERAVTAA-EEGFHAVKTKIGYPTADEDLAVVRSIRQAVGD-GVGLMV-------DYNQSLTVPEAIERGQAL 209 (355)
T ss_pred CChHHHHHHHHHHHH-HhhhHHHhhhcCCCChHhHHHHHHHHHHhhCC-CCEEEE-------eCCCCcCHHHHHHHHHHH
Confidence 345788888888877 579996 888863 23 22333321 123344 489999999999988885
Q ss_pred hhcCCceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeeccccccHHHHHHHHHHHH
Q 040341 98 ISDHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSK 177 (251)
Q Consensus 98 ~~~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqiGtlte~l~~~~~a~ 177 (251)
++|++.+||||+..+||+++++|++++ .++|+.|| ++.++.++++.++.++++.+++|++++||+|++++++++|+
T Consensus 210 -~~~~i~~iEeP~~~~d~~~~~~l~~~~--~ipia~~E-~~~~~~~~~~~i~~~~~d~i~~~~~~~GGit~~~~ia~~A~ 285 (355)
T cd03321 210 -DQEGLTWIEEPTLQHDYEGHARIASAL--RTPVQMGE-NWLGPEEMFKALSAGACDLVMPDLMKIGGVTGWLRASALAE 285 (355)
T ss_pred -HcCCCCEEECCCCCcCHHHHHHHHHhc--CCCEEEcC-CCcCHHHHHHHHHhCCCCeEecCHhhhCCHHHHHHHHHHHH
Confidence 999999999999999999999999999 79999999 68999999999999999999999999999999999999999
Q ss_pred HcCCcEEEecCCCCCCchhHhhhhhhcc
Q 040341 178 RAGWGVMASHRSGETEDTFIADLSVGLA 205 (251)
Q Consensus 178 ~~g~~~ivs~rsgEt~d~~iadLAva~~ 205 (251)
.+|+.++. |..+ ...+|++.++.
T Consensus 286 ~~gi~~~~-h~~~----~~~~h~~aa~~ 308 (355)
T cd03321 286 QAGIPMSS-HLFQ----EISAHLLAVTP 308 (355)
T ss_pred HcCCeecc-cchH----HHHHHHHHhCC
Confidence 99999764 4322 23567766543
No 27
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=99.72 E-value=1.1e-16 Score=147.27 Aligned_cols=159 Identities=19% Similarity=0.198 Sum_probs=128.1
Q ss_pred CCCcHHHHHHHHHHHHhcCCcc-ceeeeee-----hh----hhcccccCCcceeecCCCCCCCCCCccChhhHHHHHHHh
Q 040341 28 IQESYEGFELLKTAIAKGGYIG-KIVIGMD-----VA----ASEFYDSKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSF 97 (251)
Q Consensus 28 ~~~~eeal~~i~~Ai~~aGy~~-kI~iglD-----~A----ase~~~~~~g~Y~l~~~~~~~d~~~~~s~~elid~~~~l 97 (251)
+.+.++.++.+++.+ +.||+. ||++|.+ ++ .++.+.+ +-...+ |+|+.+|.++.+.+...|
T Consensus 116 i~~~~~~~~~a~~~~-~~G~~~~KvKvG~~~~~~d~~~v~air~~~g~-~~~l~v-------DaN~~w~~~~A~~~~~~l 186 (320)
T PRK02714 116 LPAGEAALQQWQTLW-QQGYRTFKWKIGVDPLEQELKIFEQLLERLPA-GAKLRL-------DANGGLSLEEAKRWLQLC 186 (320)
T ss_pred cCCCHHHHHHHHHHH-HcCCCEEEEEECCCChHHHHHHHHHHHHhcCC-CCEEEE-------ECCCCCCHHHHHHHHHHH
Confidence 456678888888866 689996 9999853 22 1222221 123454 489999999988877774
Q ss_pred hhc---CCceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeeccccccHHHHHHHHH
Q 040341 98 ISD---HPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVK 174 (251)
Q Consensus 98 ~~~---ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqiGtlte~l~~~~ 174 (251)
++ |+|.+||||+..+|++++++|++++ .+||++|| ++.++.++.+.++.++++.++|||.++|++++++ +
T Consensus 187 -~~l~~~~i~~iEqP~~~~~~~~~~~l~~~~--~~Pia~DE-s~~~~~d~~~~~~~~a~d~v~ik~~k~GGi~~~~---~ 259 (320)
T PRK02714 187 -DRRLSGKIEFIEQPLPPDQFDEMLQLSQDY--QTPIALDE-SVANLAQLQQCYQQGWRGIFVIKPAIAGSPSRLR---Q 259 (320)
T ss_pred -hhccCCCccEEECCCCcccHHHHHHHHHhC--CCCEEECC-ccCCHHHHHHHHHcCCCCEEEEcchhcCCHHHHH---H
Confidence 65 8999999999999999999999998 79999999 7999999999999999999999999999999654 6
Q ss_pred HHHHcCCcEEEecCCCCCCchhHhhhhhh
Q 040341 175 MSKRAGWGVMASHRSGETEDTFIADLSVG 203 (251)
Q Consensus 175 ~a~~~g~~~ivs~rsgEt~d~~iadLAva 203 (251)
+|+.+|+.+|++++ .||.....+.+.++
T Consensus 260 ~a~~~gi~~~~~~~-~es~ig~aa~~hla 287 (320)
T PRK02714 260 FCQQHPLDAVFSSV-FETAIGRKAALALA 287 (320)
T ss_pred HHHHhCCCEEEEec-hhhHHHHHHHHHHH
Confidence 79999999999987 58877665544443
No 28
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=99.71 E-value=7.3e-17 Score=149.53 Aligned_cols=148 Identities=21% Similarity=0.200 Sum_probs=121.3
Q ss_pred CCcHHHHHHHHHHHHhcCCcc-ceeeee-----------ehhhhcccccCCc-ceeecCCCCCCCCCCccChhhHHHHHH
Q 040341 29 QESYEGFELLKTAIAKGGYIG-KIVIGM-----------DVAASEFYDSKDK-TYDLNFKEENNDGSQKVSGDGLKNVYR 95 (251)
Q Consensus 29 ~~~eeal~~i~~Ai~~aGy~~-kI~igl-----------D~Aase~~~~~~g-~Y~l~~~~~~~d~~~~~s~~elid~~~ 95 (251)
.++++.++.+.+++ +.||+. ||++|. |++--+..++.-| ...+. .|+|+.+|.++.+.+.+
T Consensus 119 ~~~~~~~~~a~~~~-~~Gf~~~Kikvg~~~~~~~~~~~~d~~~v~avr~~~g~~~~l~-----vDan~~~~~~~A~~~~~ 192 (341)
T cd03327 119 TDLDELPDEAKEYL-KEGYRGMKMRFGYGPSDGHAGLRKNVELVRAIREAVGYDVDLM-----LDCYMSWNLNYAIKMAR 192 (341)
T ss_pred CCHHHHHHHHHHHH-HcCCCEEEECCCCCCCcchHHHHHHHHHHHHHHHHhCCCCcEE-----EECCCCCCHHHHHHHHH
Confidence 46788888888877 689996 888763 2221112221101 12222 25899999999888777
Q ss_pred HhhhcCCceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeeccccccHHHHHHHHHH
Q 040341 96 SFISDHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKM 175 (251)
Q Consensus 96 ~l~~~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqiGtlte~l~~~~~ 175 (251)
. +++|++.+||||+..+|+++|++|++++ .+||++|| +++++.++++.++.++++.+++|++++|++|++++++.+
T Consensus 193 ~-l~~~~~~~iEeP~~~~d~~~~~~l~~~~--~~pIa~gE-~~~~~~~~~~~i~~~a~d~i~~d~~~~GGit~~~~i~~~ 268 (341)
T cd03327 193 A-LEKYELRWIEEPLIPDDIEGYAELKKAT--GIPISTGE-HEYTVYGFKRLLEGRAVDILQPDVNWVGGITELKKIAAL 268 (341)
T ss_pred H-hhhcCCccccCCCCccCHHHHHHHHhcC--CCCeEecc-CccCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHH
Confidence 7 5999999999999999999999999998 79999999 688999999999999999999999999999999999999
Q ss_pred HHHcCCcEEEe
Q 040341 176 SKRAGWGVMAS 186 (251)
Q Consensus 176 a~~~g~~~ivs 186 (251)
|+.+|+.++..
T Consensus 269 A~~~g~~~~~h 279 (341)
T cd03327 269 AEAYGVPVVPH 279 (341)
T ss_pred HHHcCCeeccc
Confidence 99999997653
No 29
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=99.71 E-value=1.6e-16 Score=150.46 Aligned_cols=122 Identities=11% Similarity=0.095 Sum_probs=110.1
Q ss_pred CCCCccChhhHHHHHHHhhhcCCceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEee
Q 040341 80 DGSQKVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 159 (251)
Q Consensus 80 d~~~~~s~~elid~~~~l~~~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK 159 (251)
|+|+.+|.++.+.+.+. +++|++.+||||+..+|++++++|++++ .++|++|| ++.++..+++.++.++++.+++|
T Consensus 212 DaN~~w~~~~A~~~~~~-l~~~~l~~iEeP~~~~d~~~~~~L~~~~--~iPIa~dE-s~~~~~~~~~li~~~a~dii~~d 287 (404)
T PRK15072 212 DVHHRLTPIEAARLGKS-LEPYRLFWLEDPTPAENQEAFRLIRQHT--TTPLAVGE-VFNSIWDCKQLIEEQLIDYIRTT 287 (404)
T ss_pred ECCCCCCHHHHHHHHHh-ccccCCcEEECCCCccCHHHHHHHHhcC--CCCEEeCc-CccCHHHHHHHHHcCCCCEEecC
Confidence 58999999999998888 5999999999999999999999999998 79999999 68899999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHHcCCcEEEecCCCCCCchhHhhhhhhcc
Q 040341 160 VNQIGSVTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLA 205 (251)
Q Consensus 160 ~nqiGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d~~iadLAva~~ 205 (251)
+.++|++|++++++++|+.+|+.++++..+.++.-.+.+.+.++..
T Consensus 288 ~~~~GGit~~~kia~lA~~~gi~~~~h~~~~~s~l~~aa~~hlaaa 333 (404)
T PRK15072 288 VTHAGGITHLRRIADFAALYQVRTGSHGPTDLSPVCMAAALHFDLW 333 (404)
T ss_pred ccccCcHHHHHHHHHHHHHcCCceeeccCcccchHHHHHHHHHHHh
Confidence 9999999999999999999999999876666777766666555443
No 30
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=99.71 E-value=2.1e-16 Score=147.79 Aligned_cols=161 Identities=15% Similarity=0.167 Sum_probs=130.4
Q ss_pred CCCCcHHHHHHHHHHHHhcCCcc-ceeeeee------h----hhhcccccCCcceeecCCCCCCCCCCccChhhHHHHHH
Q 040341 27 NIQESYEGFELLKTAIAKGGYIG-KIVIGMD------V----AASEFYDSKDKTYDLNFKEENNDGSQKVSGDGLKNVYR 95 (251)
Q Consensus 27 ~~~~~eeal~~i~~Ai~~aGy~~-kI~iglD------~----Aase~~~~~~g~Y~l~~~~~~~d~~~~~s~~elid~~~ 95 (251)
.+.++++.++.+.+++ +.||+. ||+++.+ + +.++.+.+ ...+. .|+|+.+|.++.+.+.+
T Consensus 140 ~~~~~~~~~~~a~~~~-~~Gf~~~Kik~~~~~~~~~di~~i~~vR~~~G~---~~~l~-----vDan~~~~~~~A~~~~~ 210 (368)
T cd03329 140 GLESPEAYADFAEECK-ALGYRAIKLHPWGPGVVRRDLKACLAVREAVGP---DMRLM-----HDGAHWYSRADALRLGR 210 (368)
T ss_pred cCCCHHHHHHHHHHHH-HcCCCEEEEecCCchhHHHHHHHHHHHHHHhCC---CCeEE-----EECCCCcCHHHHHHHHH
Confidence 3457889999999987 689997 8887643 2 22332321 22222 25889999999998888
Q ss_pred HhhhcCCceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccC-HHHHHHHHhccCcceeEeeccccccHHHHHHHHH
Q 040341 96 SFISDHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTN-PKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVK 174 (251)
Q Consensus 96 ~l~~~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn-~~~i~~~i~~~a~n~ilIK~nqiGtlte~l~~~~ 174 (251)
. +++|++.+||||+..+|++++++|++++ .+||++|| ++.+ +.+.++.++.++++.+++|++++|++|++++++.
T Consensus 211 ~-l~~~~l~~iEeP~~~~d~~~~~~l~~~~--~ipIa~~E-~~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~~~~ia~ 286 (368)
T cd03329 211 A-LEELGFFWYEDPLREASISSYRWLAEKL--DIPILGTE-HSRGALESRADWVLAGATDFLRADVNLVGGITGAMKTAH 286 (368)
T ss_pred H-hhhcCCCeEeCCCCchhHHHHHHHHhcC--CCCEEccC-cccCcHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHH
Confidence 7 5999999999999999999999999998 79999999 5666 9999999999999999999999999999999999
Q ss_pred HHHHcCCcEEEecCCCCCCchhHhhhhhhcc
Q 040341 175 MSKRAGWGVMASHRSGETEDTFIADLSVGLA 205 (251)
Q Consensus 175 ~a~~~g~~~ivs~rsgEt~d~~iadLAva~~ 205 (251)
+|+++|+.+++... -..-+|+|.++.
T Consensus 287 ~a~~~gi~~~~h~~-----~~a~~hlaaa~~ 312 (368)
T cd03329 287 LAEAFGLDVELHGN-----GAANLHVIAAIR 312 (368)
T ss_pred HHHHcCCEEEEECh-----HHHHHHHHhcCC
Confidence 99999999987543 234456666553
No 31
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=99.70 E-value=2.8e-16 Score=143.97 Aligned_cols=160 Identities=16% Similarity=0.171 Sum_probs=126.0
Q ss_pred CCCcHHHHHHHHHHHHhcCCcc-ceeeee-eh----h----hhcccccCCcceeecCCCCCCCCCCccChhhHHHHHHHh
Q 040341 28 IQESYEGFELLKTAIAKGGYIG-KIVIGM-DV----A----ASEFYDSKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSF 97 (251)
Q Consensus 28 ~~~~eeal~~i~~Ai~~aGy~~-kI~igl-D~----A----ase~~~~~~g~Y~l~~~~~~~d~~~~~s~~elid~~~~l 97 (251)
+.++++... ++.++.||+. ||++|. |+ + ..+.+.+ +-...+ |+|+.+|.++.+.+.+.|
T Consensus 109 ~~~~~~~~~---~~~~~~Gf~~~KiKvG~~~~~~d~~~v~~vr~~~g~-~~~l~v-------DaN~~w~~~~A~~~~~~l 177 (307)
T TIGR01927 109 AGDPALLLL---RSAKAEGFRTFKWKVGVGELAREGMLVNLLLEALPD-KAELRL-------DANGGLSPDEAQQFLKAL 177 (307)
T ss_pred CCCHHHHHH---HHHHhCCCCEEEEEeCCCChHHHHHHHHHHHHHcCC-CCeEEE-------eCCCCCCHHHHHHHHHhc
Confidence 455565544 3344789996 999885 33 1 1222221 122344 589999999988888874
Q ss_pred hhc---CCceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeeccccccHHHHHHHHH
Q 040341 98 ISD---HPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVK 174 (251)
Q Consensus 98 ~~~---ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqiGtlte~l~~~~ 174 (251)
++ |+|.+||||+..+ ++++.|++++ .++|++|| ++.++.++.+.++.++++.+++||.++|++|+++++++
T Consensus 178 -~~~~~~~i~~iEqP~~~~--~~~~~l~~~~--~~Pia~dE-s~~~~~d~~~~~~~~~~d~i~ik~~~~GGi~~~~~i~~ 251 (307)
T TIGR01927 178 -DPNLRGRIAFLEEPLPDA--DEMSAFSEAT--GTAIALDE-SLWELPQLADEYGPGWRGALVIKPAIIGSPAKLRDLAQ 251 (307)
T ss_pred -ccccCCCceEEeCCCCCH--HHHHHHHHhC--CCCEEeCC-CcCChHHHHHHHhcCCCceEEECchhcCCHHHHHHHHH
Confidence 76 9999999999755 8999999998 89999999 78999999999999999999999999999999999999
Q ss_pred HHHHcCCcEEEecCCCCCCchhHh--hhhhhcc
Q 040341 175 MSKRAGWGVMASHRSGETEDTFIA--DLSVGLA 205 (251)
Q Consensus 175 ~a~~~g~~~ivs~rsgEt~d~~ia--dLAva~~ 205 (251)
+|+.+|+.+|++++ .||.....+ |||.+++
T Consensus 252 ~a~~~gi~~~~~~~-~es~i~~aa~~hlaa~~~ 283 (307)
T TIGR01927 252 KAHRLGLQAVFSSV-FESSIALGQLARLAAKLS 283 (307)
T ss_pred HHHHcCCCEEEECc-cchHHHHHHHHHHHHHhC
Confidence 99999999999976 488776655 5555544
No 32
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=99.69 E-value=5.7e-16 Score=146.46 Aligned_cols=158 Identities=17% Similarity=0.204 Sum_probs=130.5
Q ss_pred CCcHHHHHHHHHHHHhcCCcc-ceeeee-----eh----hhhcccccCCcceeecCCCCCCCCCCccChhhHHHHHHHhh
Q 040341 29 QESYEGFELLKTAIAKGGYIG-KIVIGM-----DV----AASEFYDSKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFI 98 (251)
Q Consensus 29 ~~~eeal~~i~~Ai~~aGy~~-kI~igl-----D~----Aase~~~~~~g~Y~l~~~~~~~d~~~~~s~~elid~~~~l~ 98 (251)
.++++..+.+.+++++.||+. ||++|. |+ +.++.+++ -...+ |+|+.+|+++.+.+.+.|
T Consensus 167 ~~~e~~~~~a~~~~~~~Gf~~~KiKvG~~~~~~di~~v~avRea~~~--~~l~v-------DaN~~w~~~~A~~~~~~l- 236 (395)
T cd03323 167 LTPEGVVRLARAAIDRYGFKSFKLKGGVLPGEEEIEAVKALAEAFPG--ARLRL-------DPNGAWSLETAIRLAKEL- 236 (395)
T ss_pred CCHHHHHHHHHHHHHhcCCcEEEEecCCCCHHHHHHHHHHHHHhCCC--CcEEE-------eCCCCcCHHHHHHHHHhc-
Confidence 467888888888886679996 898874 23 23444321 23344 489999999999988874
Q ss_pred hcCCceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeeccccccHHHHHHHHHHHHH
Q 040341 99 SDHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKR 178 (251)
Q Consensus 99 ~~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqiGtlte~l~~~~~a~~ 178 (251)
++ ++.+||||+. |++++++|++++ .++|+.|| +++++.+++..++.++++.+++|+.++|++|++++++.+|++
T Consensus 237 ~~-~l~~iEeP~~--d~~~~~~L~~~~--~~PIa~dE-s~~~~~~~~~~i~~~avdil~~d~~~~GGit~~~kia~~A~~ 310 (395)
T cd03323 237 EG-VLAYLEDPCG--GREGMAEFRRAT--GLPLATNM-IVTDFRQLGHAIQLNAVDIPLADHHFWGGMRGSVRVAQVCET 310 (395)
T ss_pred Cc-CCCEEECCCC--CHHHHHHHHHhc--CCCEEcCC-cccCHHHHHHHHHcCCCcEEeeccccccCHHHHHHHHHHHHH
Confidence 77 9999999998 999999999999 89999999 789999999999999999999999999999999999999999
Q ss_pred cCCcEEEecCCCCCCchhHhhhhhh
Q 040341 179 AGWGVMASHRSGETEDTFIADLSVG 203 (251)
Q Consensus 179 ~g~~~ivs~rsgEt~d~~iadLAva 203 (251)
+|+.+++++. +|+.....+.+.++
T Consensus 311 ~gi~~~~h~~-~e~~i~~aa~~hla 334 (395)
T cd03323 311 WGLGWGMHSN-NHLGISLAMMTHVA 334 (395)
T ss_pred cCCeEEEecC-cccHHHHHHHHHHH
Confidence 9999999775 67776655444443
No 33
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=99.69 E-value=3.7e-16 Score=145.52 Aligned_cols=157 Identities=17% Similarity=0.195 Sum_probs=128.9
Q ss_pred CcHHHHHHHHHHHHhcCCcc-ceeeeeeh--------hhhcccccCCcceeecCCCCCCCCCCccChhhHHHHHHHhhhc
Q 040341 30 ESYEGFELLKTAIAKGGYIG-KIVIGMDV--------AASEFYDSKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISD 100 (251)
Q Consensus 30 ~~eeal~~i~~Ai~~aGy~~-kI~iglD~--------Aase~~~~~~g~Y~l~~~~~~~d~~~~~s~~elid~~~~l~~~ 100 (251)
++++..+.+.+.+ +.||+. ||++|.|. +.++.+.+ +-...+ |+|+.+|.++.+.+.+. +++
T Consensus 138 ~~e~~~~~a~~~~-~~Gf~~~Kikvg~~~~~d~~~v~~vRe~~G~-~~~l~v-------DaN~~~~~~~A~~~~~~-l~~ 207 (352)
T cd03328 138 DDDRLREQLSGWV-AQGIPRVKMKIGRDPRRDPDRVAAARRAIGP-DAELFV-------DANGAYSRKQALALARA-FAD 207 (352)
T ss_pred CHHHHHHHHHHHH-HCCCCEEEeecCCCHHHHHHHHHHHHHHcCC-CCeEEE-------ECCCCCCHHHHHHHHHH-HHH
Confidence 5677888888877 589996 89887543 22333322 112333 58999999999998888 599
Q ss_pred CCceeecCCCCcccHHHHHHHHhh--hCCceEEEcccccccCHHHHHHHHhccCcceeEeeccccccHHHHHHHHHHHHH
Q 040341 101 HPIVSIEDPFDQDDWEHHAELTGK--IGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKR 178 (251)
Q Consensus 101 ypI~~IEDP~~e~D~~~~~~l~~~--lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqiGtlte~l~~~~~a~~ 178 (251)
|++.+||||+..+|++++++|+++ + .+||++|| ++.++.+.++.++.++++.+++|+.++|++|++++++.+|+.
T Consensus 208 ~~~~~~EeP~~~~d~~~~~~l~~~~~~--~iPIa~gE-~~~~~~~~~~li~~~a~div~~d~~~~GGit~~~~ia~~A~a 284 (352)
T cd03328 208 EGVTWFEEPVSSDDLAGLRLVRERGPA--GMDIAAGE-YAYTLAYFRRLLEAHAVDVLQADVTRCGGVTGFLQAAALAAA 284 (352)
T ss_pred hCcchhhCCCChhhHHHHHHHHhhCCC--CCCEEecc-cccCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999 6 79999999 789999999999999999999999999999999999999999
Q ss_pred cCCcEEEecCCCCCCchhHhhhhhhc
Q 040341 179 AGWGVMASHRSGETEDTFIADLSVGL 204 (251)
Q Consensus 179 ~g~~~ivs~rsgEt~d~~iadLAva~ 204 (251)
+|+.++..+. ...-+||+.++
T Consensus 285 ~gi~~~~h~~-----~~a~~hl~aa~ 305 (352)
T cd03328 285 HHVDLSAHCA-----PALHAHVACAV 305 (352)
T ss_pred cCCeeccCch-----HHHHHHHHHhC
Confidence 9999998642 12335555544
No 34
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=99.68 E-value=7.3e-16 Score=145.32 Aligned_cols=154 Identities=16% Similarity=0.203 Sum_probs=126.1
Q ss_pred ccccCCCCCcHHHHHHHHHHHHhcCCcc-ceeeee-----ehh----hhcccccCCcceeecCCCCCCCCCCccChhhHH
Q 040341 22 GGFAPNIQESYEGFELLKTAIAKGGYIG-KIVIGM-----DVA----ASEFYDSKDKTYDLNFKEENNDGSQKVSGDGLK 91 (251)
Q Consensus 22 GGfap~~~~~eeal~~i~~Ai~~aGy~~-kI~igl-----D~A----ase~~~~~~g~Y~l~~~~~~~d~~~~~s~~eli 91 (251)
+|+..+..++++.++.+.+.+ +.||+. |+++|- |++ .++.+.+ .-...+ |+|+.+|.++.+
T Consensus 152 ~~~~~~~~~~~~~~~~a~~~~-~~Gf~~~Kikvg~~~~~~di~~v~avRe~~G~-~~~l~v-------DaN~~w~~~~A~ 222 (385)
T cd03326 152 GGYYYPGDDLGRLRDEMRRYL-DRGYTVVKIKIGGAPLDEDLRRIEAALDVLGD-GARLAV-------DANGRFDLETAI 222 (385)
T ss_pred cCCCCCCCCHHHHHHHHHHHH-HCCCCEEEEeCCCCCHHHHHHHHHHHHHhcCC-CCeEEE-------ECCCCCCHHHHH
Confidence 344444556788888888877 689996 888863 332 2332221 113333 489999999999
Q ss_pred HHHHHhhhcCCceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCc----ceeEeeccccccHH
Q 040341 92 NVYRSFISDHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTC----NALLLKVNQIGSVT 167 (251)
Q Consensus 92 d~~~~l~~~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~----n~ilIK~nqiGtlt 167 (251)
.+.+. +++|++.+||||+..+|+++++.|++++ .+||++|| ++.++.++++.++.+++ +.+++|+.++|++|
T Consensus 223 ~~~~~-l~~~~~~~iEeP~~~~d~~~~~~L~~~~--~iPIa~gE-s~~~~~~~~~li~~~a~~~~~div~~d~~~~GGit 298 (385)
T cd03326 223 AYAKA-LAPYGLRWYEEPGDPLDYALQAELADHY--DGPIATGE-NLFSLQDARNLLRYGGMRPDRDVLQFDPGLSYGLP 298 (385)
T ss_pred HHHHH-hhCcCCCEEECCCCccCHHHHHHHHhhC--CCCEEcCC-CcCCHHHHHHHHHhCCccccCCEEEeCchhhCCHH
Confidence 98777 5999999999999999999999999999 79999999 78999999999999998 99999999999999
Q ss_pred HHHHHHHHHHHcCCc--EEEecC
Q 040341 168 ESIEAVKMSKRAGWG--VMASHR 188 (251)
Q Consensus 168 e~l~~~~~a~~~g~~--~ivs~r 188 (251)
++++++++|+.+|+. +++.|.
T Consensus 299 ~~~kia~lA~a~gi~~~~~~pH~ 321 (385)
T cd03326 299 EYLRMLDVLEAHGWSRRRFFPHG 321 (385)
T ss_pred HHHHHHHHHHHcCCCCceeecch
Confidence 999999999999998 366664
No 35
>COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only]
Probab=99.67 E-value=3.2e-16 Score=146.64 Aligned_cols=162 Identities=19% Similarity=0.263 Sum_probs=135.7
Q ss_pred CcHHHHHHHHHHHHhcCCcc-ceeeeee-----h----hhhcccccCCcceeecCCCCCCCCCCccChhhHHHHHHHhhh
Q 040341 30 ESYEGFELLKTAIAKGGYIG-KIVIGMD-----V----AASEFYDSKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFIS 99 (251)
Q Consensus 30 ~~eeal~~i~~Ai~~aGy~~-kI~iglD-----~----Aase~~~~~~g~Y~l~~~~~~~d~~~~~s~~elid~~~~l~~ 99 (251)
++++......+++.+.||+. |++++.. . |.++.+.+ ..++. .|+|+.+|.++.+.+.+. ++
T Consensus 142 ~~~e~~~~~~~~~~~~G~~~~Klk~g~~~~~~d~~~v~avRe~~g~---~~~l~-----iDan~~~~~~~A~~~~~~-l~ 212 (372)
T COG4948 142 DPEEMAAEAARALVELGFKALKLKVGVGDGDEDLERVRALREAVGD---DVRLM-----VDANGGWTLEEAIRLARA-LE 212 (372)
T ss_pred CCHHHHHHHHHHHHhcCCceEEecCCCCchHHHHHHHHHHHHHhCC---CceEE-----EeCCCCcCHHHHHHHHHH-hc
Confidence 46788877888887899997 8888765 2 33444442 23333 258999999998888887 58
Q ss_pred cCCceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeeccccccHHHHHHHHHHHHHc
Q 040341 100 DHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRA 179 (251)
Q Consensus 100 ~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqiGtlte~l~~~~~a~~~ 179 (251)
+|.|.+||||+..+|++++++|++.+ ++|||.|| ++.+..++++.++.++++.+++|+.++||+||+++++.+|+
T Consensus 213 ~~~l~~iEeP~~~~d~~~~~~l~~~~--~~PIa~gE-s~~~~~~~~~l~~~~a~div~~d~~~~GGite~~kia~~A~-- 287 (372)
T COG4948 213 EYGLEWIEEPLPPDDLEGLRELRAAT--STPIAAGE-SVYTRWDFRRLLEAGAVDIVQPDLARVGGITEALKIAALAE-- 287 (372)
T ss_pred ccCcceEECCCCccCHHHHHHHHhcC--CCCEecCc-ccccHHHHHHHHHcCCCCeecCCccccCCHHHHHHHHHHHH--
Confidence 99999999999999999999999998 59999999 89999999999999999999999999999999999999999
Q ss_pred CCcEEEecCCCCCCchhHhhhhhhccc
Q 040341 180 GWGVMASHRSGETEDTFIADLSVGLAT 206 (251)
Q Consensus 180 g~~~ivs~rsgEt~d~~iadLAva~~~ 206 (251)
++.++|+...+ +.-+..+.+.++...
T Consensus 288 ~~~~~v~~h~~-~~i~~aa~~hla~~~ 313 (372)
T COG4948 288 GFGVMVGPHVE-GPISLAAALHLAAAL 313 (372)
T ss_pred HhCCceeccCc-hHHHHHHHHHHhhcc
Confidence 88888888866 777777766666554
No 36
>TIGR03247 glucar-dehydr glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
Probab=99.66 E-value=1.8e-15 Score=144.87 Aligned_cols=160 Identities=15% Similarity=0.184 Sum_probs=127.7
Q ss_pred CCcHHHHHHHHHHHHhcCCcc-ceeeee-----eh----hhhcccccCCcceeecCCCCCCCCCCccChhhHHHHHHHhh
Q 040341 29 QESYEGFELLKTAIAKGGYIG-KIVIGM-----DV----AASEFYDSKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFI 98 (251)
Q Consensus 29 ~~~eeal~~i~~Ai~~aGy~~-kI~igl-----D~----Aase~~~~~~g~Y~l~~~~~~~d~~~~~s~~elid~~~~l~ 98 (251)
.++++..+.+.+.+++.||+. ||++|. |+ +.++.+++ -...+ |+|+.+|.++.+.+.++|
T Consensus 179 ~~~e~~~~~a~~~~~~~Gf~a~KiKvG~~~~~~Di~~v~avRea~~d--~~L~v-------DAN~~wt~~~Ai~~~~~L- 248 (441)
T TIGR03247 179 LTPEAVVRLAEAAYDRYGFRDFKLKGGVLRGEEEIEAVTALAKRFPQ--ARITL-------DPNGAWSLDEAIALCKDL- 248 (441)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEecCCCChHHHHHHHHHHHHhCCC--CeEEE-------ECCCCCCHHHHHHHHHHh-
Confidence 467888888888886679997 998874 33 33443321 22333 589999999999988885
Q ss_pred hcCCceeecCCCCccc----HHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeeccccccHHHHHHHHH
Q 040341 99 SDHPIVSIEDPFDQDD----WEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVK 174 (251)
Q Consensus 99 ~~ypI~~IEDP~~e~D----~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqiGtlte~l~~~~ 174 (251)
++| +.+||||+..+| ++++++|++++ .+||++|| +++++.++++.++.++++.+++|+. .|++|+++++++
T Consensus 249 e~~-~~~iEePv~~~d~~~~~~~la~Lr~~~--~iPIa~dE-s~~~~~~~~~li~~~avdi~~~d~~-~gGIt~~~kIa~ 323 (441)
T TIGR03247 249 KGV-LAYAEDPCGAEQGYSGREVMAEFRRAT--GLPTATNM-IATDWRQMGHALQLQAVDIPLADPH-FWTMQGSVRVAQ 323 (441)
T ss_pred hhh-hceEeCCCCcccccchHHHHHHHHHhC--CCCEEcCC-ccCCHHHHHHHHHhCCCCEEeccCC-cchHHHHHHHHH
Confidence 889 899999999998 99999999998 89999999 7999999999999999999999995 567999999999
Q ss_pred HHHHcCCcEEEecCCCCCCchhH--hhhhhhc
Q 040341 175 MSKRAGWGVMASHRSGETEDTFI--ADLSVGL 204 (251)
Q Consensus 175 ~a~~~g~~~ivs~rsgEt~d~~i--adLAva~ 204 (251)
+|+.+|+.++ .|...++..... +|||.++
T Consensus 324 lA~a~Gi~v~-~h~~~~~~i~~aa~~hlaaa~ 354 (441)
T TIGR03247 324 MCHDWGLTWG-SHSNNHFDISLAMFTHVAAAA 354 (441)
T ss_pred HHHHcCCEEE-EeCCccCHHHHHHHHHHHHhC
Confidence 9999999764 565455555444 4555443
No 37
>PRK05105 O-succinylbenzoate synthase; Provisional
Probab=99.65 E-value=2.2e-15 Score=138.85 Aligned_cols=165 Identities=15% Similarity=0.143 Sum_probs=123.9
Q ss_pred CCCCcHHHHHHHHHHHHhcCCcc-ceeeee-eh--------hhhcccccCCcceeecCCCCCCCCCCccChhhHHHHHHH
Q 040341 27 NIQESYEGFELLKTAIAKGGYIG-KIVIGM-DV--------AASEFYDSKDKTYDLNFKEENNDGSQKVSGDGLKNVYRS 96 (251)
Q Consensus 27 ~~~~~eeal~~i~~Ai~~aGy~~-kI~igl-D~--------Aase~~~~~~g~Y~l~~~~~~~d~~~~~s~~elid~~~~ 96 (251)
.+.++++.++.+.++ .||+. ||++|. ++ +.++.+++ ....+ |+|+.+|.++.+.+.+.
T Consensus 112 ~~~~~~~~~~~a~~~---~Gf~~~KvKvG~~~~~~d~~~i~~vr~~~~~--~~l~v-------DaN~~w~~~~A~~~~~~ 179 (322)
T PRK05105 112 CYGDPDELILKLADM---PGEKVAKVKVGLYEAVRDGMLVNLLLEAIPD--LKLRL-------DANRGWTLEKAQQFAKY 179 (322)
T ss_pred ecCCHHHHHHHHHHc---CCCCEEEEEECCCCHHHHHHHHHHHHHhCCC--CeEEE-------ECCCCCCHHHHHHHHHH
Confidence 345667777776664 79996 899884 32 12333322 34444 48999999999888887
Q ss_pred hhhc---CCceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeeccccccHHHHHHHH
Q 040341 97 FISD---HPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAV 173 (251)
Q Consensus 97 l~~~---ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqiGtlte~l~~~ 173 (251)
| ++ |+|.+||||+. +++..+.|++++ .++|+.|| ++.+++. ...+ .++++.++|||+++|+++++++++
T Consensus 180 l-~~~~~~~i~~iEqP~~--~~~~~~~l~~~~--~~PIa~DE-s~~~~~~-~~~~-~~~~d~i~ik~~k~GGi~~a~~i~ 251 (322)
T PRK05105 180 V-PPDYRHRIAFLEEPCK--TPDDSRAFARAT--GIAIAWDE-SLREPDF-QFEA-EPGVRAIVIKPTLTGSLEKCQELI 251 (322)
T ss_pred h-hhhcCCCccEEECCCC--CHHHHHHHHHhC--CCCEEECC-CCCchhh-hhhh-cCCCCEEEECccccCCHHHHHHHH
Confidence 4 77 99999999995 466789999998 79999999 6777753 2223 678999999999999999999999
Q ss_pred HHHHHcCCcEEEecCCCCCCchhHhhhhhhccc-CccccC
Q 040341 174 KMSKRAGWGVMASHRSGETEDTFIADLSVGLAT-GQIKTG 212 (251)
Q Consensus 174 ~~a~~~g~~~ivs~rsgEt~d~~iadLAva~~~-~~ik~G 212 (251)
++|+++|+++|++++ .||.....+-+.++... ...-.|
T Consensus 252 ~~A~~~gi~~~~~~~-~es~i~~aa~~hla~~~~~~~~~~ 290 (322)
T PRK05105 252 EQAHALGLRAVISSS-IESSLGLTQLARLAAWLTPDTIPG 290 (322)
T ss_pred HHHHHcCCcEEEECc-hhHHHHHHHHHHHHHhcCCCCCCC
Confidence 999999999999976 58877666655554443 333444
No 38
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=99.62 E-value=7.6e-15 Score=139.68 Aligned_cols=146 Identities=18% Similarity=0.259 Sum_probs=121.4
Q ss_pred CcHHHHHHHHHHHHhcCCcc-ceeeeeeh--------hhhcccccCCcceeecCCCCCCCCCCccChhhHHHHHHHhhhc
Q 040341 30 ESYEGFELLKTAIAKGGYIG-KIVIGMDV--------AASEFYDSKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISD 100 (251)
Q Consensus 30 ~~eeal~~i~~Ai~~aGy~~-kI~iglD~--------Aase~~~~~~g~Y~l~~~~~~~d~~~~~s~~elid~~~~l~~~ 100 (251)
++++..+.+.+.+ +.||+. |+++|.|. +.++-+.+ +-...+ |+|+.+|.++.+.+.+. +++
T Consensus 196 ~~~~~~~~a~~~~-~~Gf~~~KiKvg~~~~~d~~~v~avRe~vG~-~~~L~v-------DaN~~w~~~~A~~~~~~-L~~ 265 (415)
T cd03324 196 SDEKLRRLCKEAL-AQGFTHFKLKVGADLEDDIRRCRLAREVIGP-DNKLMI-------DANQRWDVPEAIEWVKQ-LAE 265 (415)
T ss_pred CHHHHHHHHHHHH-HcCCCEEEEeCCCCHHHHHHHHHHHHHhcCC-CCeEEE-------ECCCCCCHHHHHHHHHH-hhc
Confidence 4577788888877 589996 89887553 22333321 112333 58999999999998888 599
Q ss_pred CCceeecCCCCcccHHHHHHHHhhhC-CceEEEcccccccCHHHHHHHHhccCcceeEeeccccccHHHHHHHHHHHHHc
Q 040341 101 HPIVSIEDPFDQDDWEHHAELTGKIG-RHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRA 179 (251)
Q Consensus 101 ypI~~IEDP~~e~D~~~~~~l~~~lg-~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqiGtlte~l~~~~~a~~~ 179 (251)
|++.+|||||..+|+++++.|++++. ..++|++|| ++.++.+.+..++.++++.+++|+.++|++|++++++.+|+++
T Consensus 266 ~~l~~iEEP~~~~d~~~~~~L~~~~~~~~iPIa~gE-s~~~~~~~~~ll~~~a~dil~~d~~~~GGit~~~kia~lA~a~ 344 (415)
T cd03324 266 FKPWWIEEPTSPDDILGHAAIRKALAPLPIGVATGE-HCQNRVVFKQLLQAGAIDVVQIDSCRLGGVNENLAVLLMAAKF 344 (415)
T ss_pred cCCCEEECCCCCCcHHHHHHHHHhcccCCCceecCC-ccCCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHc
Confidence 99999999999999999999998872 138999999 6889999999999999999999999999999999999999999
Q ss_pred CCcEEEe
Q 040341 180 GWGVMAS 186 (251)
Q Consensus 180 g~~~ivs 186 (251)
|+.++..
T Consensus 345 gi~~~pH 351 (415)
T cd03324 345 GVPVCPH 351 (415)
T ss_pred CCeEEEc
Confidence 9988764
No 39
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=99.56 E-value=1.1e-13 Score=128.06 Aligned_cols=158 Identities=22% Similarity=0.292 Sum_probs=122.6
Q ss_pred CcHHHHHHHHHHHHhcCCcc-ceeeee-------ehh----hhcccccCCcceeecCCCCCCCCCCccChhhHHHHHHHh
Q 040341 30 ESYEGFELLKTAIAKGGYIG-KIVIGM-------DVA----ASEFYDSKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSF 97 (251)
Q Consensus 30 ~~eeal~~i~~Ai~~aGy~~-kI~igl-------D~A----ase~~~~~~g~Y~l~~~~~~~d~~~~~s~~elid~~~~l 97 (251)
+++++.+.+.+. .||+. ||++|. |++ .++.+.+ +....+ |+|+.+|.++.+.+.+.|
T Consensus 89 ~~e~~~~~~~~~---~G~~~~KvKVg~~~~~~~~Di~rv~avRe~lGp-d~~Lrv-------DAN~~ws~~~Ai~~~~~L 157 (327)
T PRK02901 89 DAAQVPEVLARF---PGCRTAKVKVAEPGQTLADDVARVNAVRDALGP-DGRVRV-------DANGGWSVDEAVAAARAL 157 (327)
T ss_pred CHHHHHHHHHHh---CCCCEEEEEECCCCCCHHHHHHHHHHHHHhcCC-CCEEEE-------ECCCCCCHHHHHHHHHHh
Confidence 456655554432 59986 888864 332 2333311 133444 489999999999988884
Q ss_pred hhcCCceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeeccccccHHHHHHHHHHHH
Q 040341 98 ISDHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSK 177 (251)
Q Consensus 98 ~~~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqiGtlte~l~~~~~a~ 177 (251)
-+.|+|.+||||+. ++++.+.|++++ .++|++|| +++++.+..+.++.++++.+++||+.+||++++++ +|+
T Consensus 158 ~e~~~l~~iEqP~~--~~~~la~Lr~~~--~vPIA~DE-s~~~~~d~~~l~~~~a~dvi~ik~~~~GGit~~lk---iA~ 229 (327)
T PRK02901 158 DADGPLEYVEQPCA--TVEELAELRRRV--GVPIAADE-SIRRAEDPLRVARAGAADVAVLKVAPLGGVRAALD---IAE 229 (327)
T ss_pred hhccCceEEecCCC--CHHHHHHHHHhC--CCCEEeCC-CCCCHHHHHHHHHcCCCCEEEeCcchhCCHHHHHH---HHH
Confidence 25799999999997 499999999999 79999999 78999999999999999999999999999999877 689
Q ss_pred HcCCcEEEecCCCCCCchhHhhhhhhcccC
Q 040341 178 RAGWGVMASHRSGETEDTFIADLSVGLATG 207 (251)
Q Consensus 178 ~~g~~~ivs~rsgEt~d~~iadLAva~~~~ 207 (251)
++|+++++|+. .||.....+.++++....
T Consensus 230 ~~gi~v~v~s~-~es~ig~aA~lhlaaalp 258 (327)
T PRK02901 230 QIGLPVVVSSA-LDTSVGIAAGLALAAALP 258 (327)
T ss_pred HcCCcEEEeCC-cccHHHHHHHHHHHHhCC
Confidence 99999999954 588877766555544433
No 40
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=99.48 E-value=2.5e-13 Score=128.57 Aligned_cols=104 Identities=13% Similarity=0.114 Sum_probs=96.3
Q ss_pred CCCCccChhhHHHHHHHhhhcCCceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEee
Q 040341 80 DGSQKVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 159 (251)
Q Consensus 80 d~~~~~s~~elid~~~~l~~~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK 159 (251)
|+|+.+|.++.+.+.+. +++|++..||||+..+|+++++.|++++.-.++|++|| .+.++.+.++.++.++++.+++|
T Consensus 214 DaN~~~~~~~Ai~~~~~-le~~~l~wiEEPl~~~d~~~~~~L~~~~~~~i~ia~gE-~~~~~~~~~~li~~~a~Divq~d 291 (394)
T PRK15440 214 DCWMSLDVNYATKLAHA-CAPYGLKWIEECLPPDDYWGYRELKRNAPAGMMVTSGE-HEATLQGFRTLLEMGCIDIIQPD 291 (394)
T ss_pred ECCCCCCHHHHHHHHHH-hhhcCCcceeCCCCcccHHHHHHHHHhCCCCCceecCC-CccCHHHHHHHHHcCCCCEEeCC
Confidence 58999999999998887 59999999999999999999999999984348899999 68899999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHHcCCcEEE
Q 040341 160 VNQIGSVTESIEAVKMSKRAGWGVMA 185 (251)
Q Consensus 160 ~nqiGtlte~l~~~~~a~~~g~~~iv 185 (251)
+.++|++|++++++.+|+.+|+.++.
T Consensus 292 ~~~~GGit~~~kia~lA~a~gi~~~p 317 (394)
T PRK15440 292 VGWCGGLTELVKIAALAKARGQLVVP 317 (394)
T ss_pred ccccCCHHHHHHHHHHHHHcCCeecc
Confidence 99999999999999999999999655
No 41
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=99.42 E-value=1.9e-12 Score=140.73 Aligned_cols=159 Identities=11% Similarity=0.129 Sum_probs=124.4
Q ss_pred CCCcHHHHHHHHHHHHhcCCcc-ceeeeee------h----hhhcccccCCcceeecCCCCCCCCCCccChhhHHHHHHH
Q 040341 28 IQESYEGFELLKTAIAKGGYIG-KIVIGMD------V----AASEFYDSKDKTYDLNFKEENNDGSQKVSGDGLKNVYRS 96 (251)
Q Consensus 28 ~~~~eeal~~i~~Ai~~aGy~~-kI~iglD------~----Aase~~~~~~g~Y~l~~~~~~~d~~~~~s~~elid~~~~ 96 (251)
..++++.++.+.+++ +.||+. |+++|.+ + +.++.+.+ .-+..+ |+|+.+|.++.+.+.+.
T Consensus 1088 ~~~~~~~~~~a~~~~-~~Gf~~~KlKvG~~~~~~~D~~~i~alRe~~G~-~~~Lrl-------DAN~~ws~~~A~~~~~~ 1158 (1655)
T PLN02980 1088 NGSPLEVAYVARKLV-EEGFSAIKLKVGRRVSPIQDAAVIQEVRKAVGY-QIELRA-------DANRNWTYEEAIEFGSL 1158 (1655)
T ss_pred CCCHHHHHHHHHHHH-HcCCCEEEEecCCCCCHHHHHHHHHHHHHHcCC-CCeEEE-------ECCCCCCHHHHHHHHHH
Confidence 457788888888877 689996 9998752 2 22333322 123444 48999999999888887
Q ss_pred hhhcCCceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHH-----HHHHHHhccCcceeEeeccccccHHHHHH
Q 040341 97 FISDHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPK-----RVEKAIKEKTCNALLLKVNQIGSVTESIE 171 (251)
Q Consensus 97 l~~~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~-----~i~~~i~~~a~n~ilIK~nqiGtlte~l~ 171 (251)
+++|+|.+||||+. |++++.+|++++ .++|++|| ++.++. .++..+..+++ .++|||+++|+++++++
T Consensus 1159 -L~~~~i~~iEqPl~--~~~~l~~l~~~~--~iPIA~DE-s~~~~~~~~~~~~~~~i~~~~~-~i~iK~~~~GGit~~~~ 1231 (1655)
T PLN02980 1159 -VKSCNLKYIEEPVQ--DEDDLIKFCEET--GLPVALDE-TIDKFEECPLRMLTKYTHPGIV-AVVIKPSVVGGFENAAL 1231 (1655)
T ss_pred -HhhcCCCEEECCCC--CHHHHHHHHHhC--CCCEEeCC-CcCCcccchHHHHHHHHHCCCe-EEEeChhhhCCHHHHHH
Confidence 59999999999997 688999999998 79999999 565543 46666666655 89999999999999999
Q ss_pred HHHHHHHcCCcEEEecCCCCCCchhHhhhhhh
Q 040341 172 AVKMSKRAGWGVMASHRSGETEDTFIADLSVG 203 (251)
Q Consensus 172 ~~~~a~~~g~~~ivs~rsgEt~d~~iadLAva 203 (251)
++++|+++|+.+|+|+. .||.....|-+.++
T Consensus 1232 ia~~A~~~gi~~~~~s~-~es~Ig~aA~~hla 1262 (1655)
T PLN02980 1232 IARWAQQHGKMAVISAA-YESGLGLSAYIQFA 1262 (1655)
T ss_pred HHHHHHHcCCeEEecCc-ccCHHHHHHHHHHH
Confidence 99999999999999975 58877665544443
No 42
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=99.10 E-value=2.1e-09 Score=93.70 Aligned_cols=146 Identities=22% Similarity=0.339 Sum_probs=105.5
Q ss_pred ChhhHHHHHHHhhh-cCC-ceeecCCCCccc----HHHHHHHHhhh---CCceEEEcccccccCHHHHHHHHhccCccee
Q 040341 86 SGDGLKNVYRSFIS-DHP-IVSIEDPFDQDD----WEHHAELTGKI---GRHVQIVGDDLLVTNPKRVEKAIKEKTCNAL 156 (251)
Q Consensus 86 s~~elid~~~~l~~-~yp-I~~IEDP~~e~D----~~~~~~l~~~l---g~~~~ivgDdl~vtn~~~i~~~i~~~a~n~i 156 (251)
+.+.+.+|+.+|-+ ..| =+.||.|++..+ ++..+.|++.+ |.++.||.|| .+.+.++|+.....+++..+
T Consensus 87 d~~~~adYl~~l~~aA~P~~L~iEgP~d~g~r~~QI~~l~~Lr~~L~~~g~~v~iVADE-WCNT~eDI~~F~da~A~dmV 165 (248)
T PF07476_consen 87 DPDRMADYLAELEEAAAPFKLRIEGPMDAGSREAQIEALAELREELDRRGINVEIVADE-WCNTLEDIREFADAKAADMV 165 (248)
T ss_dssp -HHHHHHHHHHHHHHHTTS-EEEE-SB--SSHHHHHHHHHHHHHHHHHCT--EEEEE-T-T--SHHHHHHHHHTT-SSEE
T ss_pred CHHHHHHHHHHHHHhcCCCeeeeeCCcCCCChHHHHHHHHHHHHHHHhcCCCCeEEeeh-hcCCHHHHHHHHhcCCcCEE
Confidence 57789999999764 356 368999999654 56677777665 7789999999 89999999999999999999
Q ss_pred EeeccccccHHHHHHHHHHHHHcCCcEEEecCCCCCCch--hHhhhhhhcccCcc--ccCCCCchhHHHHhhHHHHHHHH
Q 040341 157 LLKVNQIGSVTESIEAVKMSKRAGWGVMASHRSGETEDT--FIADLSVGLATGQI--KTGAPCRSERLAKYNQLLRIEEE 232 (251)
Q Consensus 157 lIK~nqiGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d~--~iadLAva~~~~~i--k~G~~~r~Er~aKyN~llrie~~ 232 (251)
=||.--.|++..+++++-+|+++|+...+|...-||.-+ .-+|+|+|+++.|+ |||==..--=+--||++.|+-..
T Consensus 166 QIKtPDLGgi~ntieAvlyCk~~gvgaY~GGtCNETd~SArv~~hvalAt~p~q~LaKPGMG~DEG~mIV~NEM~R~lal 245 (248)
T PF07476_consen 166 QIKTPDLGGINNTIEAVLYCKEHGVGAYLGGTCNETDRSARVCVHVALATRPDQMLAKPGMGVDEGYMIVTNEMNRTLAL 245 (248)
T ss_dssp EE-GGGGSSTHHHHHHHHHHHHTT-EEEE---TTS-HHHHHHHHHHHHHCT-SEEE--SSSSSHHHHHHHHHHHHHHHHH
T ss_pred EecCCCccchhhHHHHHHHHHhcCCceeecccccccchhHHHHHHHHHhcCHHHHhcCCCCCccchHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999664 56899999999987 66644333335678888887543
No 43
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=98.56 E-value=1.8e-07 Score=72.78 Aligned_cols=72 Identities=15% Similarity=0.237 Sum_probs=62.9
Q ss_pred ccccccCHHHHHHHHhccCcceeEeeccccccHHHHHHHHHHHHHcCCcEEEecCCCCCCchhHhhhhhhcccCc
Q 040341 134 DDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLATGQ 208 (251)
Q Consensus 134 Ddl~vtn~~~i~~~i~~~a~n~ilIK~nqiGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d~~iadLAva~~~~~ 208 (251)
|| ++.++.++++.++.++++.+++|+.++|++|++++++.+|+++|+.+|+++. ++...+.+.+.++.....
T Consensus 1 gE-~~~~~~~~~~li~~~a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~--~~~i~~aa~~hlaaa~~~ 72 (111)
T PF13378_consen 1 GE-SLFSLHDFRRLIEAGAVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM--ESGIGLAASLHLAAALPN 72 (111)
T ss_dssp ST-TSSSHHHHHHHHHTTSCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS--SSHHHHHHHHHHHHTSTT
T ss_pred CC-CCCCHHHHHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC--CCcHHHHHHHHHHHhcCC
Confidence 56 6889999999999999999999999999999999999999999999999996 887777777777666553
No 44
>PF01188 MR_MLE: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; InterPro: IPR013342 Mandelate racemase 5.1.2.2 from EC (MR) and muconate lactonising enzyme 5.5.1.1 from EC (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyse mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures [, ]. A number of other proteins also seem to be evolutionary related to these two enzymes. These include, various plasmid-encoded chloromuconate cycloisomerases 5.5.1.7 from EC, Escherichia coli protein rspA [], E. coli bifunctional DGOA protein, E. coli hypothetical proteins ycjG, yfaW and yidU and a hypothetical protein from Streptomyces ambofaciens []. This entry represents the C-terminal region of these proteins.; PDB: 3QLD_B 3CYJ_C 2QDD_B 3FVD_A 3H7V_A 2OZT_A 3NXL_A 1JDF_D 1JCT_B 1EC9_C ....
Probab=98.33 E-value=9.7e-07 Score=63.15 Aligned_cols=50 Identities=30% Similarity=0.379 Sum_probs=44.2
Q ss_pred CCCCccChhhHHHHHHHhhhcCCceeecCCCCcccHHHHHHHHhhhCCceEEEcc
Q 040341 80 DGSQKVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGD 134 (251)
Q Consensus 80 d~~~~~s~~elid~~~~l~~~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgD 134 (251)
|+|+.+|.++.+.+.+. +++| .+||||+..+|++++++|++++ ++||++|
T Consensus 18 Dan~~~~~~~a~~~~~~-l~~~--~~iEeP~~~~d~~~~~~l~~~~--~~pia~d 67 (67)
T PF01188_consen 18 DANQAWTLEEAIRLARA-LEDY--EWIEEPLPPDDLDGLAELRQQT--SVPIAAD 67 (67)
T ss_dssp E-TTBBSHHHHHHHHHH-HGGG--SEEESSSSTTSHHHHHHHHHHC--SSEEEES
T ss_pred ECCCCCCHHHHHHHHHH-cChh--heeecCCCCCCHHHHHHHHHhC--CCCEEeC
Confidence 37888999999998888 4775 9999999999999999999999 8999987
No 45
>COG3799 Mal Methylaspartate ammonia-lyase [Amino acid transport and metabolism]
Probab=97.81 E-value=0.00013 Score=66.51 Aligned_cols=128 Identities=17% Similarity=0.253 Sum_probs=108.1
Q ss_pred cChhhHHHHHHHhhhcCC--ceeecCCCC----cccHHHHHHHHhhh---CCceEEEcccccccCHHHHHHHHhccCcce
Q 040341 85 VSGDGLKNVYRSFISDHP--IVSIEDPFD----QDDWEHHAELTGKI---GRHVQIVGDDLLVTNPKRVEKAIKEKTCNA 155 (251)
Q Consensus 85 ~s~~elid~~~~l~~~yp--I~~IEDP~~----e~D~~~~~~l~~~l---g~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ 155 (251)
+.+.-..+|..+|-++-+ -.+||-|.+ +..++.++++++.+ |..+.||.|| .|.+.++|.-..+.++|..
T Consensus 246 ~dp~r~a~yi~~l~~~a~~~pL~IEgP~DaGs~~aQI~~~a~i~~~L~~~Gs~v~IVaDE-wCnt~~Di~~F~dA~a~h~ 324 (410)
T COG3799 246 MDPLRCAQYIASLEKEAQGLPLYIEGPVDAGSKPAQIRLLAAITKELTRLGSGVKIVADE-WCNTYQDIVDFTDAAACHM 324 (410)
T ss_pred CCHHHHHHHHHHHHhhCCCCceeeeccccCCCCHHHHHHHHHHHHHHhhcCCcceEeehh-hcccHHHHHHHHhhccccE
Confidence 567777788888765433 248999998 56678888887665 7789999999 8999999999999999999
Q ss_pred eEeeccccccHHHHHHHHHHHHHcCCcEEEecCCCCCCch--hHhhhhhhcccCcc--ccCC
Q 040341 156 LLLKVNQIGSVTESIEAVKMSKRAGWGVMASHRSGETEDT--FIADLSVGLATGQI--KTGA 213 (251)
Q Consensus 156 ilIK~nqiGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d~--~iadLAva~~~~~i--k~G~ 213 (251)
+-||.--+|++-++.+++.+|..+.....||...-||..+ .-+|.|+|+.+-++ |||-
T Consensus 325 VQiKTPDvGsi~~~~rAvlyC~~~~~~AYvGGtCnETdvSAr~cvHValAt~a~~mLaKPGM 386 (410)
T COG3799 325 VQIKTPDVGSIHNIVRAVLYCNSHSMEAYVGGTCNETDVSARTCVHVALATRAMRMLAKPGM 386 (410)
T ss_pred EEecCCCcchHHHHHHHHhhhccCccceeecccccccchhhhhhhhhhhhhcHHHHhcCCCC
Confidence 9999999999999999999999999999999999998664 56888999888765 5653
No 46
>COG1441 MenC O-succinylbenzoate synthase [Coenzyme metabolism]
Probab=96.93 E-value=0.0044 Score=54.96 Aligned_cols=105 Identities=17% Similarity=0.182 Sum_probs=79.4
Q ss_pred CCCCccChhhHHHHHHHhhhcC--CceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeE
Q 040341 80 DGSQKVSGDGLKNVYRSFISDH--PIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALL 157 (251)
Q Consensus 80 d~~~~~s~~elid~~~~l~~~y--pI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~il 157 (251)
|+|+.+|+.....|-+..--.| -|.++|.|..-.+ .-..|.... .+-|.=|| ++..++....+ +....+|+
T Consensus 162 DANRaWtp~Ka~~FAkyV~p~~R~RIaFLEEPCkt~a--eSr~Fa~eT--gIAIAWDE-s~readF~~e~--e~gv~avV 234 (321)
T COG1441 162 DANRAWTPLKAQQFAKYVNPDYRSRIAFLEEPCKTRA--ESRAFARET--GIAIAWDE-SLREADFAFEA--EPGVRAVV 234 (321)
T ss_pred cccccCChHHHHHHHHhcCHHHHHHHHHHhcccCChH--HHHHHHHhc--CeeEeecc-hhccccccccc--CCCceEEE
Confidence 6899999887544333321244 3999999987543 344666777 58899999 67765544333 55788999
Q ss_pred eeccccccHHHHHHHHHHHHHcCCcEEEecCCCCC
Q 040341 158 LKVNQIGSVTESIEAVKMSKRAGWGVMASHRSGET 192 (251)
Q Consensus 158 IK~nqiGtlte~l~~~~~a~~~g~~~ivs~rsgEt 192 (251)
|||.-+|++...-+.++.|+..|+..+||+. -|+
T Consensus 235 IKPTL~GSl~r~~eli~qAh~lGl~AVISSS-iES 268 (321)
T COG1441 235 IKPTLTGSLQRVRELVQQAHALGLTAVISSS-IES 268 (321)
T ss_pred ecccchhhHHHHHHHHHHHHhcCceeEeech-hhh
Confidence 9999999999999999999999999999984 555
No 47
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=96.79 E-value=0.019 Score=53.03 Aligned_cols=157 Identities=18% Similarity=0.298 Sum_probs=103.5
Q ss_pred HHHHHHhcCCCCCCCCCcccccCCCCCcHHHHHHHHHHHHhcCCccc-eeeeeehhhhc-ccccCCc-ceeecCCCCCCC
Q 040341 4 QAVIKKKYGQDATNVGDEGGFAPNIQESYEGFELLKTAIAKGGYIGK-IVIGMDVAASE-FYDSKDK-TYDLNFKEENND 80 (251)
Q Consensus 4 k~~l~~~~g~~~~~vgdeGGfap~~~~~eeal~~i~~Ai~~aGy~~k-I~iglD~Aase-~~~~~~g-~Y~l~~~~~~~d 80 (251)
-++|+. .|..++..|==|||.- +++++.+++.|.... |.+.=+---.- +-+++++ .+++.+.+
T Consensus 43 a~vL~~-lG~~~~a~GflGg~tg---------~~~~~~l~~~gi~~~fv~v~g~TRinvki~~~~~~~~Tein~~G---- 108 (310)
T COG1105 43 ARVLKD-LGIPVTALGFLGGFTG---------EFFVALLKDEGIPDAFVEVKGDTRINVKILDEEDGEETEINFPG---- 108 (310)
T ss_pred HHHHHH-cCCCceEEEecCCccH---------HHHHHHHHhcCCCceEEEccCCCeeeEEEEecCCCcEEEecCCC----
Confidence 345554 5678888887777755 347777777776531 22211111000 1122222 67887544
Q ss_pred CCCccChh---hHHHHHHHhhhcCCceee----cCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCc
Q 040341 81 GSQKVSGD---GLKNVYRSFISDHPIVSI----EDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTC 153 (251)
Q Consensus 81 ~~~~~s~~---elid~~~~l~~~ypI~~I----EDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~ 153 (251)
-..|.+ ++++.+++++.+..++-| =..+..+++..|..+.++. .+.++.| ++-+-+..+++.+
T Consensus 109 --p~is~~~~~~~l~~~~~~l~~~d~VvlsGSlP~g~~~d~y~~li~~~~~~--g~~vilD----~Sg~~L~~~L~~~-- 178 (310)
T COG1105 109 --PEISEAELEQFLEQLKALLESDDIVVLSGSLPPGVPPDAYAELIRILRQQ--GAKVILD----TSGEALLAALEAK-- 178 (310)
T ss_pred --CCCCHHHHHHHHHHHHHhcccCCEEEEeCCCCCCCCHHHHHHHHHHHHhc--CCeEEEE----CChHHHHHHHccC--
Confidence 345544 456677776777886644 4588999999999999998 4567767 3677788888766
Q ss_pred ceeEeeccc----------cccHHHHHHHHHHHHHcCCcEEE
Q 040341 154 NALLLKVNQ----------IGSVTESIEAVKMSKRAGWGVMA 185 (251)
Q Consensus 154 n~ilIK~nq----------iGtlte~l~~~~~a~~~g~~~iv 185 (251)
..+||||. ..++.+.+++++.....|+..+|
T Consensus 179 -P~lIKPN~~EL~~~~g~~~~~~~d~i~~a~~l~~~g~~~Vi 219 (310)
T COG1105 179 -PWLIKPNREELEALFGRELTTLEDVIKAARELLAEGIENVI 219 (310)
T ss_pred -CcEEecCHHHHHHHhCCCCCChHHHHHHHHHHHHCCCCEEE
Confidence 99999996 56777888888888888887643
No 48
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=95.86 E-value=0.5 Score=42.79 Aligned_cols=93 Identities=17% Similarity=0.181 Sum_probs=74.8
Q ss_pred hhHHHHHHHhhhcCCceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeeccccccHH
Q 040341 88 DGLKNVYRSFISDHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVT 167 (251)
Q Consensus 88 ~elid~~~~l~~~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqiGtlt 167 (251)
++....+++.+++++|-.+-+||++.+.+-..++ + .+.-+|-- .++|...++.+.. ....|++|-++.+++.
T Consensus 77 ~~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l~~~---v--d~~kIga~-~~~n~~LL~~~a~--~gkPV~lk~G~~~s~~ 148 (266)
T PRK13398 77 EEGLKILKEVGDKYNLPVVTEVMDTRDVEEVADY---A--DMLQIGSR-NMQNFELLKEVGK--TKKPILLKRGMSATLE 148 (266)
T ss_pred HHHHHHHHHHHHHcCCCEEEeeCChhhHHHHHHh---C--CEEEECcc-cccCHHHHHHHhc--CCCcEEEeCCCCCCHH
Confidence 4556778888899999999999999988877765 2 33344444 4789888887754 5678999999999999
Q ss_pred HHHHHHHHHHHcCC-cEEEecC
Q 040341 168 ESIEAVKMSKRAGW-GVMASHR 188 (251)
Q Consensus 168 e~l~~~~~a~~~g~-~~ivs~r 188 (251)
|.+.+++..+..|- .+++-+|
T Consensus 149 e~~~A~e~i~~~Gn~~i~L~~r 170 (266)
T PRK13398 149 EWLYAAEYIMSEGNENVVLCER 170 (266)
T ss_pred HHHHHHHHHHhcCCCeEEEEEC
Confidence 99999999998877 6888888
No 49
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=95.85 E-value=0.089 Score=48.78 Aligned_cols=71 Identities=10% Similarity=0.195 Sum_probs=55.2
Q ss_pred ccChhhHHHHHHHhhhcCCceeec-----------CCCC-cccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhcc
Q 040341 84 KVSGDGLKNVYRSFISDHPIVSIE-----------DPFD-QDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEK 151 (251)
Q Consensus 84 ~~s~~elid~~~~l~~~ypI~~IE-----------DP~~-e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~ 151 (251)
.++.+|++.+.+. ++++++-+|| .|+. ..+++..+++.+.+ +++|++.. .+++++++++.++.+
T Consensus 237 g~~~~e~~~ia~~-Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~~--~iPVi~~G-~i~t~~~a~~~l~~g 312 (336)
T cd02932 237 GWDLEDSVELAKA-LKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQEA--GIPVIAVG-LITDPEQAEAILESG 312 (336)
T ss_pred CCCHHHHHHHHHH-HHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhhC--CCCEEEeC-CCCCHHHHHHHHHcC
Confidence 3567788877666 5888888888 4663 34566777888888 78999998 789999999999999
Q ss_pred CcceeEe
Q 040341 152 TCNALLL 158 (251)
Q Consensus 152 a~n~ilI 158 (251)
.++.|.+
T Consensus 313 ~aD~V~~ 319 (336)
T cd02932 313 RADLVAL 319 (336)
T ss_pred CCCeehh
Confidence 8887543
No 50
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=95.74 E-value=0.33 Score=45.76 Aligned_cols=134 Identities=20% Similarity=0.218 Sum_probs=94.8
Q ss_pred CCCCcHHHHHHHHHHHHhcCCccceeeeeehhhhcccccCCcceeecCCCCCCCCCCccChhhHHHHHHHhhhcCCceee
Q 040341 27 NIQESYEGFELLKTAIAKGGYIGKIVIGMDVAASEFYDSKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHPIVSI 106 (251)
Q Consensus 27 ~~~~~eeal~~i~~Ai~~aGy~~kI~iglD~Aase~~~~~~g~Y~l~~~~~~~d~~~~~s~~elid~~~~l~~~ypI~~I 106 (251)
.+++.|++++.... +++.|-+ +..+ -.|+..+.-|.+ +.+- ++-.+++.+..++++|-.+
T Consensus 110 sIEs~eq~l~~A~~-lk~~g~~--~~r~------g~~kpRtsp~sf----------~G~g-~~gl~~L~~~~~e~Gl~~~ 169 (352)
T PRK13396 110 SVENEEMIVETAKR-VKAAGAK--FLRG------GAYKPRTSPYAF----------QGHG-ESALELLAAAREATGLGII 169 (352)
T ss_pred cccCHHHHHHHHHH-HHHcCCC--EEEe------eeecCCCCCccc----------CCch-HHHHHHHHHHHHHcCCcEE
Confidence 57888888887666 6666542 1110 112222222322 2233 4556888888889999999
Q ss_pred cCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeeccccccHHHHHHHHHHHHHcCC-cEEE
Q 040341 107 EDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAGW-GVMA 185 (251)
Q Consensus 107 EDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqiGtlte~l~~~~~a~~~g~-~~iv 185 (251)
-+||+.++.+-..++ . .+.-+|-- .++|...++.+-+. ...|+||-++..|+.|.+.+++...+.|- .+++
T Consensus 170 tev~d~~~v~~~~~~---~--d~lqIga~-~~~n~~LL~~va~t--~kPVllk~G~~~t~ee~~~A~e~i~~~Gn~~viL 241 (352)
T PRK13396 170 TEVMDAADLEKIAEV---A--DVIQVGAR-NMQNFSLLKKVGAQ--DKPVLLKRGMAATIDEWLMAAEYILAAGNPNVIL 241 (352)
T ss_pred EeeCCHHHHHHHHhh---C--CeEEECcc-cccCHHHHHHHHcc--CCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEE
Confidence 999999988777665 2 34444554 47898888877654 56999999999999999999999998887 5899
Q ss_pred ecC
Q 040341 186 SHR 188 (251)
Q Consensus 186 s~r 188 (251)
-||
T Consensus 242 ~er 244 (352)
T PRK13396 242 CER 244 (352)
T ss_pred Eec
Confidence 888
No 51
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=95.72 E-value=0.39 Score=44.94 Aligned_cols=106 Identities=20% Similarity=0.173 Sum_probs=81.0
Q ss_pred hHHHHHHHhhhcCCceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeeccccccHHH
Q 040341 89 GLKNVYRSFISDHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTE 168 (251)
Q Consensus 89 elid~~~~l~~~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqiGtlte 168 (251)
+-+.++.+.+++++|-.+-+||+.++.+-..++ + .+.-+|-- .++|...++.+... ...|+||-++.+|+.|
T Consensus 144 ~gL~~L~~~~~~~Gl~v~tev~d~~~~~~l~~~---v--d~lqIgAr-~~~N~~LL~~va~~--~kPViLk~G~~~ti~E 215 (335)
T PRK08673 144 EGLKLLAEAREETGLPIVTEVMDPRDVELVAEY---V--DILQIGAR-NMQNFDLLKEVGKT--NKPVLLKRGMSATIEE 215 (335)
T ss_pred HHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHh---C--CeEEECcc-cccCHHHHHHHHcC--CCcEEEeCCCCCCHHH
Confidence 335778887899999999999999988877765 2 33344444 47999999887654 5689999999999999
Q ss_pred HHHHHHHHHHcCC-cEEEecC---CCCCCchhHhhhhh
Q 040341 169 SIEAVKMSKRAGW-GVMASHR---SGETEDTFIADLSV 202 (251)
Q Consensus 169 ~l~~~~~a~~~g~-~~ivs~r---sgEt~d~~iadLAv 202 (251)
.+.+++..++.|- .+++-|| +.++-.....||..
T Consensus 216 ~l~A~e~i~~~GN~~viL~erG~~tf~~~~~~~ldl~a 253 (335)
T PRK08673 216 WLMAAEYILAEGNPNVILCERGIRTFETATRNTLDLSA 253 (335)
T ss_pred HHHHHHHHHHcCCCeEEEEECCCCCCCCcChhhhhHHH
Confidence 9999999988776 6888887 44444444455543
No 52
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=95.43 E-value=0.65 Score=41.78 Aligned_cols=134 Identities=14% Similarity=0.186 Sum_probs=91.7
Q ss_pred CCCCcHHHHHHHHHHHHhcCCccceeeeeehhhhcccccCCcceeecCCCCCCCCCCccChhhHHHHHHHhhhcCCceee
Q 040341 27 NIQESYEGFELLKTAIAKGGYIGKIVIGMDVAASEFYDSKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHPIVSI 106 (251)
Q Consensus 27 ~~~~~eeal~~i~~Ai~~aGy~~kI~iglD~Aase~~~~~~g~Y~l~~~~~~~d~~~~~s~~elid~~~~l~~~ypI~~I 106 (251)
.++|.|+.++.... +++.|.. ++.. |.|+ +..+|. .-+..-.+. +..+.+..++++|-.+
T Consensus 24 ~vEs~e~~~~~a~~-~~~~g~~-------------~~r~--g~~k-pRts~~--sf~G~G~~g-l~~L~~~~~~~Gl~~~ 83 (250)
T PRK13397 24 SIESYDHIRLAASS-AKKLGYN-------------YFRG--GAYK-PRTSAA--SFQGLGLQG-IRYLHEVCQEFGLLSV 83 (250)
T ss_pred ccCCHHHHHHHHHH-HHHcCCC-------------EEEe--cccC-CCCCCc--ccCCCCHHH-HHHHHHHHHHcCCCEE
Confidence 46776776665555 7777743 2222 3332 111111 112233333 5777777899999999
Q ss_pred cCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeeccccccHHHHHHHHHHHHHcCC-cEEE
Q 040341 107 EDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAGW-GVMA 185 (251)
Q Consensus 107 EDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqiGtlte~l~~~~~a~~~g~-~~iv 185 (251)
-+|++..+.+-..+ .+ .+.-+|-- .++|...++.+... ...|+||-+|..|+.|.+.+++..++.|- .+++
T Consensus 84 Tev~d~~~v~~~~e---~v--dilqIgs~-~~~n~~LL~~va~t--gkPVilk~G~~~t~~e~~~A~e~i~~~Gn~~i~L 155 (250)
T PRK13397 84 SEIMSERQLEEAYD---YL--DVIQVGAR-NMQNFEFLKTLSHI--DKPILFKRGLMATIEEYLGALSYLQDTGKSNIIL 155 (250)
T ss_pred EeeCCHHHHHHHHh---cC--CEEEECcc-cccCHHHHHHHHcc--CCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEE
Confidence 99999888776655 23 34444554 47898888877654 67999999999999999999999999887 5888
Q ss_pred ecC
Q 040341 186 SHR 188 (251)
Q Consensus 186 s~r 188 (251)
-||
T Consensus 156 ~eR 158 (250)
T PRK13397 156 CER 158 (250)
T ss_pred Ecc
Confidence 885
No 53
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=95.36 E-value=0.21 Score=46.38 Aligned_cols=116 Identities=13% Similarity=0.155 Sum_probs=72.9
Q ss_pred CCCcccccCCCCCcHHHHHHHHHHHHhcCCccceeeeeehhhhcccccCCcceeecCCCCCCCCCCccChhhHHHHHHHh
Q 040341 18 VGDEGGFAPNIQESYEGFELLKTAIAKGGYIGKIVIGMDVAASEFYDSKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSF 97 (251)
Q Consensus 18 vgdeGGfap~~~~~eeal~~i~~Ai~~aGy~~kI~iglD~Aase~~~~~~g~Y~l~~~~~~~d~~~~~s~~elid~~~~l 97 (251)
..||.|=.. .....-+++.|.+.-+..| +++.+++++.+.++.+ ..++.+|.+++.+.
T Consensus 187 R~D~yGGsl-enR~rf~~EiI~aIR~avG--~d~~v~vris~~~~~~------------------~g~~~eea~~ia~~- 244 (338)
T cd04733 187 RTDEYGGSL-ENRARLLLEIYDAIRAAVG--PGFPVGIKLNSADFQR------------------GGFTEEDALEVVEA- 244 (338)
T ss_pred CCccCCCCH-HHHHHHHHHHHHHHHHHcC--CCCeEEEEEcHHHcCC------------------CCCCHHHHHHHHHH-
Confidence 446644221 1223334444444222333 3567777776544332 13567788887776
Q ss_pred hhcCCceeec-------CCCCc--cc----------HHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEe
Q 040341 98 ISDHPIVSIE-------DPFDQ--DD----------WEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLL 158 (251)
Q Consensus 98 ~~~ypI~~IE-------DP~~e--~D----------~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilI 158 (251)
++++++-+|| +|... .+ ++.-+++.+.+ ++||+++. .++++++++++++.+.++.|.+
T Consensus 245 Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v--~iPVi~~G-~i~t~~~a~~~l~~g~aD~V~l 321 (338)
T cd04733 245 LEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVT--KTPLMVTG-GFRTRAAMEQALASGAVDGIGL 321 (338)
T ss_pred HHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHc--CCCEEEeC-CCCCHHHHHHHHHcCCCCeeee
Confidence 5888888887 55422 11 34445777778 78999998 6899999999999999998765
No 54
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=95.21 E-value=0.19 Score=45.26 Aligned_cols=93 Identities=19% Similarity=0.207 Sum_probs=74.8
Q ss_pred hhHHHHHHHhhhcCCceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeeccccccHH
Q 040341 88 DGLKNVYRSFISDHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVT 167 (251)
Q Consensus 88 ~elid~~~~l~~~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqiGtlt 167 (251)
++-+..+++.+++++|-.+-+||+.++.+--.++ + .+.-+|-- .++|...++.+.. ....|+||-++.+++.
T Consensus 75 ~~gl~~l~~~~~~~Gl~~~t~~~d~~~~~~l~~~---~--d~lkI~s~-~~~n~~LL~~~a~--~gkPVilk~G~~~t~~ 146 (260)
T TIGR01361 75 EEGLKLLRRAADEHGLPVVTEVMDPRDVEIVAEY---A--DILQIGAR-NMQNFELLKEVGK--QGKPVLLKRGMGNTIE 146 (260)
T ss_pred HHHHHHHHHHHHHhCCCEEEeeCChhhHHHHHhh---C--CEEEECcc-cccCHHHHHHHhc--CCCcEEEeCCCCCCHH
Confidence 4446778888899999999999999887776654 2 34444444 4789998888765 4669999999999999
Q ss_pred HHHHHHHHHHHcCC-cEEEecC
Q 040341 168 ESIEAVKMSKRAGW-GVMASHR 188 (251)
Q Consensus 168 e~l~~~~~a~~~g~-~~ivs~r 188 (251)
|...+++..++.|- .+++-||
T Consensus 147 e~~~Ave~i~~~Gn~~i~l~~r 168 (260)
T TIGR01361 147 EWLYAAEYILSSGNGNVILCER 168 (260)
T ss_pred HHHHHHHHHHHcCCCcEEEEEC
Confidence 99999999999888 6888887
No 55
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=94.85 E-value=0.67 Score=41.80 Aligned_cols=144 Identities=10% Similarity=0.078 Sum_probs=89.0
Q ss_pred CCccChhhHHHHHHHhhhcCCceeecC--CC-CcccHHHHHHHHhhhCCceEEEc------ccccccCHHHHHHHHhccC
Q 040341 82 SQKVSGDGLKNVYRSFISDHPIVSIED--PF-DQDDWEHHAELTGKIGRHVQIVG------DDLLVTNPKRVEKAIKEKT 152 (251)
Q Consensus 82 ~~~~s~~elid~~~~l~~~ypI~~IED--P~-~e~D~~~~~~l~~~lg~~~~ivg------Ddl~vtn~~~i~~~i~~~a 152 (251)
+..+|.++.++++.. +++-+|-.||= |+ .+.|.+.|..+.+.....+.++. .+..+-|...++.+.+.+.
T Consensus 14 ~~~~s~e~k~~i~~~-L~~~Gv~~IE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~a~~~g~ 92 (273)
T cd07941 14 GISFSVEDKLRIARK-LDELGVDYIEGGWPGSNPKDTEFFARAKKLKLKHAKLAAFGSTRRAGVKAEEDPNLQALLEAGT 92 (273)
T ss_pred CCCCCHHHHHHHHHH-HHHcCCCEEEecCCcCCHHHHHHHHHHHHcCCCCcEEEEEecccccCCCccchHHHHHHHhCCC
Confidence 457899999998887 58889999997 44 67788888877554211233332 1222234445666666544
Q ss_pred cceeEee-----------cc--ccccHHHHHHHHHHHHHcCCcEEEecC----CCCCCchhHhhhh---hhcccCccccC
Q 040341 153 CNALLLK-----------VN--QIGSVTESIEAVKMSKRAGWGVMASHR----SGETEDTFIADLS---VGLATGQIKTG 212 (251)
Q Consensus 153 ~n~ilIK-----------~n--qiGtlte~l~~~~~a~~~g~~~ivs~r----sgEt~d~~iadLA---va~~~~~ik~G 212 (251)
. .+.|- +| +--.+..+.+++++|++.|+.+.++.. +..++..++.+++ ...++..|...
T Consensus 93 ~-~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~g~~~i~l~ 171 (273)
T cd07941 93 P-VVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFFDGYKANPEYALATLKAAAEAGADWLVLC 171 (273)
T ss_pred C-EEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEeccccCCCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 3 33331 11 112455677899999999999988644 2356778888776 66777777655
Q ss_pred CC---CchhHHHHhhHHH
Q 040341 213 AP---CRSERLAKYNQLL 227 (251)
Q Consensus 213 ~~---~r~Er~aKyN~ll 227 (251)
+. ...+++..+=+.+
T Consensus 172 DT~G~~~P~~v~~lv~~l 189 (273)
T cd07941 172 DTNGGTLPHEIAEIVKEV 189 (273)
T ss_pred cCCCCCCHHHHHHHHHHH
Confidence 44 3445554444433
No 56
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=94.58 E-value=0.7 Score=43.49 Aligned_cols=128 Identities=16% Similarity=0.225 Sum_probs=88.9
Q ss_pred CCccChhhHHHHHHHhhhcCCceeecCCCC---cccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEe
Q 040341 82 SQKVSGDGLKNVYRSFISDHPIVSIEDPFD---QDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLL 158 (251)
Q Consensus 82 ~~~~s~~elid~~~~l~~~ypI~~IEDP~~---e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilI 158 (251)
+..+|.+|.++++.. +++.++-.||=.|. ++||+..+.+.+. +..+.|++= ...++++++++++.+. ..+.|
T Consensus 16 ~~~~s~~~k~~ia~~-L~~~Gv~~IEvG~p~~~~~~~e~i~~i~~~-~~~~~v~~~--~r~~~~di~~a~~~g~-~~i~i 90 (363)
T TIGR02090 16 GVSLTVEQKVEIARK-LDELGVDVIEAGFPIASEGEFEAIKKISQE-GLNAEICSL--ARALKKDIDKAIDCGV-DSIHT 90 (363)
T ss_pred CCCCCHHHHHHHHHH-HHHcCCCEEEEeCCCCChHHHHHHHHHHhc-CCCcEEEEE--cccCHHHHHHHHHcCc-CEEEE
Confidence 457899999897777 59999999986432 6778777777655 345666532 3468999999988764 33443
Q ss_pred --eccc-----------cccHHHHHHHHHHHHHcCCcEEEec-CCCCCCchhHhhh---hhhcccCccccCCC
Q 040341 159 --KVNQ-----------IGSVTESIEAVKMSKRAGWGVMASH-RSGETEDTFIADL---SVGLATGQIKTGAP 214 (251)
Q Consensus 159 --K~nq-----------iGtlte~l~~~~~a~~~g~~~ivs~-rsgEt~d~~iadL---Ava~~~~~ik~G~~ 214 (251)
..|. -.-+..+.+++++|++.|+.+.++. .++.++..++.++ ++..++..|...+.
T Consensus 91 ~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~DT 163 (363)
T TIGR02090 91 FIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDATRTDIDFLIKVFKRAEEAGADRINIADT 163 (363)
T ss_pred EEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 2221 1135667789999999999998886 5567778888776 45556776654444
No 57
>TIGR03586 PseI pseudaminic acid synthase.
Probab=94.26 E-value=0.69 Score=43.16 Aligned_cols=145 Identities=11% Similarity=0.110 Sum_probs=90.1
Q ss_pred CcHHHHHHHHHHHHhcCCccceeeeeehhhhcccccCC-cceeecCCCCCCC-------CCCccChhhHHHHHHHhhhcC
Q 040341 30 ESYEGFELLKTAIAKGGYIGKIVIGMDVAASEFYDSKD-KTYDLNFKEENND-------GSQKVSGDGLKNVYRSFISDH 101 (251)
Q Consensus 30 ~~eeal~~i~~Ai~~aGy~~kI~iglD~Aase~~~~~~-g~Y~l~~~~~~~d-------~~~~~s~~elid~~~~l~~~y 101 (251)
+.+.|+++|..|. ++|-.- |++..- -+.+++.... ..|... .+.+.+ ..-.++.++. ..+.+.++++
T Consensus 15 ~~~~A~~lI~~A~-~aGAda-vKFQ~~-~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~el~~e~~-~~L~~~~~~~ 89 (327)
T TIGR03586 15 SLERALAMIEAAK-AAGADA-IKLQTY-TPDTITLDSDRPEFIIK-GGLWDGRTLYDLYQEAHTPWEWH-KELFERAKEL 89 (327)
T ss_pred hHHHHHHHHHHHH-HhCCCE-EEeeec-cHHHhhccccccccccc-cCCcCCccHHHHHHHhhCCHHHH-HHHHHHHHHh
Confidence 6799999999877 788642 455442 3333322111 111110 000000 0113444443 3344558999
Q ss_pred CceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeeccccccHHHHHHHHHHHHHcCC
Q 040341 102 PIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAGW 181 (251)
Q Consensus 102 pI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqiGtlte~l~~~~~a~~~g~ 181 (251)
+|.++-.||+.++.+-.. .++-...=||-- .++|...|+...+ ....|+||-+. .|+.|...+++..+++|.
T Consensus 90 Gi~~~stpfd~~svd~l~----~~~v~~~KI~S~-~~~n~~LL~~va~--~gkPvilstG~-~t~~Ei~~Av~~i~~~g~ 161 (327)
T TIGR03586 90 GLTIFSSPFDETAVDFLE----SLDVPAYKIASF-EITDLPLIRYVAK--TGKPIIMSTGI-ATLEEIQEAVEACREAGC 161 (327)
T ss_pred CCcEEEccCCHHHHHHHH----HcCCCEEEECCc-cccCHHHHHHHHh--cCCcEEEECCC-CCHHHHHHHHHHHHHCCC
Confidence 999999999988765443 343234444443 4689999998765 46789999998 799999999999998887
Q ss_pred -cEEEec
Q 040341 182 -GVMASH 187 (251)
Q Consensus 182 -~~ivs~ 187 (251)
.+++=|
T Consensus 162 ~~i~Llh 168 (327)
T TIGR03586 162 KDLVLLK 168 (327)
T ss_pred CcEEEEe
Confidence 566644
No 58
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=94.21 E-value=1.6 Score=41.24 Aligned_cols=95 Identities=17% Similarity=0.216 Sum_probs=74.7
Q ss_pred cChhhHHHHHHHhhhcCCceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeeccccc
Q 040341 85 VSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIG 164 (251)
Q Consensus 85 ~s~~elid~~~~l~~~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqiG 164 (251)
...+. ...+.+.+++++|..+-+||+..+.+-..++ + .+.-+|-- .++|...++.+... ...|+||-++..
T Consensus 166 ~~~e~-l~~L~~~~~~~Gl~~~t~v~d~~~~~~l~~~---v--d~lkI~s~-~~~n~~LL~~~a~~--gkPVilk~G~~~ 236 (360)
T PRK12595 166 LGVEG-LKILKQVADEYGLAVISEIVNPADVEVALDY---V--DVIQIGAR-NMQNFELLKAAGRV--NKPVLLKRGLSA 236 (360)
T ss_pred CCHHH-HHHHHHHHHHcCCCEEEeeCCHHHHHHHHHh---C--CeEEECcc-cccCHHHHHHHHcc--CCcEEEeCCCCC
Confidence 44444 5667777899999999999999887777665 2 34444444 47898888887654 568999999999
Q ss_pred cHHHHHHHHHHHHHcCC-cEEEecC
Q 040341 165 SVTESIEAVKMSKRAGW-GVMASHR 188 (251)
Q Consensus 165 tlte~l~~~~~a~~~g~-~~ivs~r 188 (251)
|+.|...+++...+.|- .+++-||
T Consensus 237 t~~e~~~Ave~i~~~Gn~~i~L~er 261 (360)
T PRK12595 237 TIEEFIYAAEYIMSQGNGQIILCER 261 (360)
T ss_pred CHHHHHHHHHHHHHCCCCCEEEECC
Confidence 99999999999998887 6888875
No 59
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=94.16 E-value=0.37 Score=44.99 Aligned_cols=134 Identities=15% Similarity=0.193 Sum_probs=89.6
Q ss_pred CcHHHHHHHHHHHHhcCCccceeeeeehhhhcccccC-C-------------cceeecCCCCCCCCCCccChhhHHHHHH
Q 040341 30 ESYEGFELLKTAIAKGGYIGKIVIGMDVAASEFYDSK-D-------------KTYDLNFKEENNDGSQKVSGDGLKNVYR 95 (251)
Q Consensus 30 ~~eeal~~i~~Ai~~aGy~~kI~iglD~Aase~~~~~-~-------------g~Y~l~~~~~~~d~~~~~s~~elid~~~ 95 (251)
+.+.|+++|..|. ++|.. -|++..- -+.+++.+. . ..|++ |+ .-.++.++ ...+.
T Consensus 14 dl~~A~~lI~~A~-~aGad-aVKfQt~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~l~~e~-~~~L~ 82 (329)
T TIGR03569 14 SLELAKKLVDAAA-EAGAD-AVKFQTF-KAEDLVSKNAPKAEYQKINTGAEESQLEM-LK------KLELSEED-HRELK 82 (329)
T ss_pred cHHHHHHHHHHHH-HhCCC-EEEeeeC-CHHHhhCcccccccccccCCcCCCcHHHH-HH------HhCCCHHH-HHHHH
Confidence 6799999999987 78864 2444432 222222211 1 11222 11 12344444 56677
Q ss_pred HhhhcCCceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeeccccccHHHHHHHHHH
Q 040341 96 SFISDHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKM 175 (251)
Q Consensus 96 ~l~~~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqiGtlte~l~~~~~ 175 (251)
+.+++++|.++-.||++++.+-.. .++-.+.=||-- .++|...|+...+. ...|+||-+. .|+.|..++++.
T Consensus 83 ~~~~~~Gi~~~stpfd~~svd~l~----~~~v~~~KIaS~-~~~n~pLL~~~A~~--gkPvilStGm-atl~Ei~~Av~~ 154 (329)
T TIGR03569 83 EYCESKGIEFLSTPFDLESADFLE----DLGVPRFKIPSG-EITNAPLLKKIARF--GKPVILSTGM-ATLEEIEAAVGV 154 (329)
T ss_pred HHHHHhCCcEEEEeCCHHHHHHHH----hcCCCEEEECcc-cccCHHHHHHHHhc--CCcEEEECCC-CCHHHHHHHHHH
Confidence 779999999999999988765444 443344444443 47999999987664 6689999988 699999999999
Q ss_pred HHHcCCc
Q 040341 176 SKRAGWG 182 (251)
Q Consensus 176 a~~~g~~ 182 (251)
.+++|..
T Consensus 155 i~~~G~~ 161 (329)
T TIGR03569 155 LRDAGTP 161 (329)
T ss_pred HHHcCCC
Confidence 9998864
No 60
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=94.00 E-value=0.33 Score=41.94 Aligned_cols=66 Identities=9% Similarity=0.290 Sum_probs=48.9
Q ss_pred hHHHHHHHhhhcCCceee-------cC-CCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEe
Q 040341 89 GLKNVYRSFISDHPIVSI-------ED-PFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLL 158 (251)
Q Consensus 89 elid~~~~l~~~ypI~~I-------ED-P~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilI 158 (251)
+..++.+. +.++++-+| ++ +...-+|+.-+++.+.. +++|+++. -+++++++.+.++.+.++.+.+
T Consensus 139 ~~~~~~~~-l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~--~ipvi~~G-gi~~~~d~~~~l~~~gad~V~i 212 (231)
T cd02801 139 ETLELAKA-LEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAV--SIPVIANG-DIFSLEDALRCLEQTGVDGVMI 212 (231)
T ss_pred HHHHHHHH-HHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCC--CCeEEEeC-CCCCHHHHHHHHHhcCCCEEEE
Confidence 65565554 577787666 55 55566888888888776 68888888 6889999999888777776654
No 61
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=93.61 E-value=2 Score=38.51 Aligned_cols=132 Identities=16% Similarity=0.229 Sum_probs=86.7
Q ss_pred CCccChhhHHHHHHHhhhcCCceeecCCC---CcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccC---cce
Q 040341 82 SQKVSGDGLKNVYRSFISDHPIVSIEDPF---DQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKT---CNA 155 (251)
Q Consensus 82 ~~~~s~~elid~~~~l~~~ypI~~IEDP~---~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a---~n~ 155 (251)
+..++.++.+.++.. +++-+|-.||=.+ .++||+....+.+... .+.+.+ +.-.+.+.++++.+.+. .+.
T Consensus 14 ~~~~~~~~k~~i~~~-L~~~Gv~~iEvg~~~~~~~~~~~~~~l~~~~~-~~~~~~--l~r~~~~~v~~a~~~~~~~~~~~ 89 (268)
T cd07940 14 GVSLTPEEKLEIARQ-LDELGVDVIEAGFPAASPGDFEAVKRIAREVL-NAEICG--LARAVKKDIDAAAEALKPAKVDR 89 (268)
T ss_pred CCCCCHHHHHHHHHH-HHHcCCCEEEEeCCCCCHHHHHHHHHHHHhCC-CCEEEE--EccCCHhhHHHHHHhCCCCCCCE
Confidence 346899999998887 5888998888643 5688888887776543 344431 11257888888887663 333
Q ss_pred eEe--ecc-------c----cccHHHHHHHHHHHHHcCCcEEEecC-CCCCCchhHhhhh---hhcccCccccCCCCch
Q 040341 156 LLL--KVN-------Q----IGSVTESIEAVKMSKRAGWGVMASHR-SGETEDTFIADLS---VGLATGQIKTGAPCRS 217 (251)
Q Consensus 156 ilI--K~n-------q----iGtlte~l~~~~~a~~~g~~~ivs~r-sgEt~d~~iadLA---va~~~~~ik~G~~~r~ 217 (251)
+.| ..| . ---+-.+.++++.|++.|+.+.++.. ++.++..+++.++ ...++..|-..+..+.
T Consensus 90 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~ 168 (268)
T cd07940 90 IHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSAEDATRTDLDFLIEVVEAAIEAGATTINIPDTVGY 168 (268)
T ss_pred EEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEeeecCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCC
Confidence 333 111 1 11245567899999999999988863 4556677766665 5666777766555443
No 62
>KOG2367 consensus Alpha-isopropylmalate synthase/homocitrate synthase [Amino acid transport and metabolism]
Probab=93.22 E-value=0.81 Score=44.67 Aligned_cols=118 Identities=17% Similarity=0.272 Sum_probs=85.8
Q ss_pred CCCccChhhHHHHHHHhhhcCCceeecCCCC---cccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhcc--Ccce
Q 040341 81 GSQKVSGDGLKNVYRSFISDHPIVSIEDPFD---QDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEK--TCNA 155 (251)
Q Consensus 81 ~~~~~s~~elid~~~~l~~~ypI~~IEDP~~---e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~--a~n~ 155 (251)
++..+++++.+++.+. +.++.+.+||=.|. ++|++.-....+.+|..+.||+= .-...++|+++++.. +-++
T Consensus 72 ~ga~~~~~qK~eiar~-L~~~gvd~IEv~fP~aSe~~~~~~~~i~k~~g~~~~I~~l--~rc~~~di~~tvEAl~~aKr~ 148 (560)
T KOG2367|consen 72 PGAFLTTEQKLEIARQ-LAKLGVDIIEVGFPVASEQDFEDCKTIAKTLGYVPVICTL--IRCHMDDIERTVEALKYAKRP 148 (560)
T ss_pred CCCcCCcHHHHHHHHH-HHhcCcCEEEecCcccCcchHHHHHHHHHhCCCCceEEEe--eccchHHHHHHHHHhhccCcc
Confidence 4568899999998777 58999999987775 78888888888878887777764 334677777776632 2111
Q ss_pred --------------eEeeccccccHHHHHHHHHHHHHcC-CcEEEec-CCCCCCchhHhhhh
Q 040341 156 --------------LLLKVNQIGSVTESIEAVKMSKRAG-WGVMASH-RSGETEDTFIADLS 201 (251)
Q Consensus 156 --------------ilIK~nqiGtlte~l~~~~~a~~~g-~~~ivs~-rsgEt~d~~iadLA 201 (251)
+.+|-.+--.+.-|.++++++++.| |.+-.|. .+++|+-.|+..+-
T Consensus 149 ~Vh~~~aTSd~~rey~~~kskeevi~~Ave~ikfvkslg~~~ieFSpEd~~rse~~fl~eI~ 210 (560)
T KOG2367|consen 149 RVHVFIATSDIHREYKLKKSKEEVIESAVEVIKFVKSLGKWDIEFSPEDFGRSELEFLLEIL 210 (560)
T ss_pred eEEEEecccHHHHHHHhcccHHHHHHHHHHHHHHHHhcccceEEECccccccCcHHHHHHHH
Confidence 1134455567777888999999999 9998887 55667766666554
No 63
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=93.21 E-value=0.35 Score=45.18 Aligned_cols=98 Identities=18% Similarity=0.231 Sum_probs=76.9
Q ss_pred HHHHHHHhhhcCC--ceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeeccccccHH
Q 040341 90 LKNVYRSFISDHP--IVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVT 167 (251)
Q Consensus 90 lid~~~~l~~~yp--I~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqiGtlt 167 (251)
-+...++| .+-+ ||=+-=| +.+|-+++.++.+++ ++|+|+|--| +++.+..+++-+ +..+=|.|+.||.-.
T Consensus 38 Tv~QI~~L-~~aG~dIVRvtv~-~~e~A~A~~~Ik~~~--~vPLVaDiHf--~~rla~~~~~~g-~~k~RINPGNig~~~ 110 (361)
T COG0821 38 TVAQIKAL-ERAGCDIVRVTVP-DMEAAEALKEIKQRL--NVPLVADIHF--DYRLALEAAECG-VDKVRINPGNIGFKD 110 (361)
T ss_pred HHHHHHHH-HHcCCCEEEEecC-CHHHHHHHHHHHHhC--CCCEEEEeec--cHHHHHHhhhcC-cceEEECCcccCcHH
Confidence 34445553 4444 7655544 346789999999999 8999999544 677777777665 889999999999999
Q ss_pred HHHHHHHHHHHcCCcEEEecCCCCCCc
Q 040341 168 ESIEAVKMSKRAGWGVMASHRSGETED 194 (251)
Q Consensus 168 e~l~~~~~a~~~g~~~ivs~rsgEt~d 194 (251)
..-++++.|++.|+++-||-..|--+-
T Consensus 111 ~v~~vVe~Ak~~g~piRIGVN~GSLek 137 (361)
T COG0821 111 RVREVVEAAKDKGIPIRIGVNAGSLEK 137 (361)
T ss_pred HHHHHHHHHHHcCCCEEEecccCchhH
Confidence 999999999999999999998776443
No 64
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=92.79 E-value=1.1 Score=40.88 Aligned_cols=70 Identities=10% Similarity=0.218 Sum_probs=52.2
Q ss_pred cChhhHHHHHHHhhhcCCceee-------cCCCC---------cccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHH
Q 040341 85 VSGDGLKNVYRSFISDHPIVSI-------EDPFD---------QDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAI 148 (251)
Q Consensus 85 ~s~~elid~~~~l~~~ypI~~I-------EDP~~---------e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i 148 (251)
++.+|.+++.+. +.++++-+| ++|.. ..+++..+.+.+.+ +++|++.. -+++++++++++
T Consensus 225 ~~~~e~~~la~~-l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~--~iPVi~~G-gi~t~~~a~~~l 300 (327)
T cd02803 225 LTLEEAIEIAKA-LEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAV--KIPVIAVG-GIRDPEVAEEIL 300 (327)
T ss_pred CCHHHHHHHHHH-HHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHC--CCCEEEeC-CCCCHHHHHHHH
Confidence 567787776666 588887777 35443 34566667788887 68888888 688999999999
Q ss_pred hccCcceeEe
Q 040341 149 KEKTCNALLL 158 (251)
Q Consensus 149 ~~~a~n~ilI 158 (251)
+.+.++.|.+
T Consensus 301 ~~g~aD~V~i 310 (327)
T cd02803 301 AEGKADLVAL 310 (327)
T ss_pred HCCCCCeeee
Confidence 9888887654
No 65
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=92.78 E-value=4.4 Score=36.46 Aligned_cols=143 Identities=16% Similarity=0.162 Sum_probs=92.5
Q ss_pred CCccChhhHHHHHHHhhhcCCceeecCCCCcc------------cHHHHHHHHhhhC--CceEEEcccccccCHHHHHHH
Q 040341 82 SQKVSGDGLKNVYRSFISDHPIVSIEDPFDQD------------DWEHHAELTGKIG--RHVQIVGDDLLVTNPKRVEKA 147 (251)
Q Consensus 82 ~~~~s~~elid~~~~l~~~ypI~~IEDP~~e~------------D~~~~~~l~~~lg--~~~~ivgDdl~vtn~~~i~~~ 147 (251)
+-.+|.++.+++... +++.+|-+||=.|... |.+.|..+.+... .++..+.+- ..-+.+++..+
T Consensus 14 ~~~f~~~~~~~ia~~-L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~l~~a 91 (266)
T cd07944 14 NWDFGDEFVKAIYRA-LAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDY-GNDDIDLLEPA 91 (266)
T ss_pred CccCCHHHHHHHHHH-HHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECC-CCCCHHHHHHH
Confidence 457899999887776 6999999999886532 3688888876642 244343332 12246777777
Q ss_pred HhccCcceeEeeccccccHHHHHHHHHHHHHcCCcEEEecC-CCCCCchhHhhhh---hhcccCcccc---CCCCchhHH
Q 040341 148 IKEKTCNALLLKVNQIGSVTESIEAVKMSKRAGWGVMASHR-SGETEDTFIADLS---VGLATGQIKT---GAPCRSERL 220 (251)
Q Consensus 148 i~~~a~n~ilIK~nqiGtlte~l~~~~~a~~~g~~~ivs~r-sgEt~d~~iadLA---va~~~~~ik~---G~~~r~Er~ 220 (251)
.+.+ ...+-|-. ....+.++.++++.|++.|+.+.++-. +..+++.++.+++ ...++..|.. .+....+++
T Consensus 92 ~~~g-v~~iri~~-~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v 169 (266)
T cd07944 92 SGSV-VDMIRVAF-HKHEFDEALPLIKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIKPDVFYIVDSFGSMYPEDI 169 (266)
T ss_pred hcCC-cCEEEEec-ccccHHHHHHHHHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEEecCCCCCCHHHH
Confidence 6544 23322221 223788999999999999999987742 2346777777766 5556666644 344456666
Q ss_pred HHhhHHHH
Q 040341 221 AKYNQLLR 228 (251)
Q Consensus 221 aKyN~llr 228 (251)
.++=+.++
T Consensus 170 ~~lv~~l~ 177 (266)
T cd07944 170 KRIISLLR 177 (266)
T ss_pred HHHHHHHH
Confidence 55555544
No 66
>PRK05481 lipoyl synthase; Provisional
Probab=92.51 E-value=2 Score=39.19 Aligned_cols=175 Identities=17% Similarity=0.135 Sum_probs=99.9
Q ss_pred CCcHHHHHHHHHHHHhcCCccceeeeeehhhhcccccCCcceeecCCCCCCCCCCccChhhHHHHHHHhhhcCC-c-eee
Q 040341 29 QESYEGFELLKTAIAKGGYIGKIVIGMDVAASEFYDSKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHP-I-VSI 106 (251)
Q Consensus 29 ~~~eeal~~i~~Ai~~aGy~~kI~iglD~Aase~~~~~~g~Y~l~~~~~~~d~~~~~s~~elid~~~~l~~~yp-I-~~I 106 (251)
-++++.++.+.++. +.|++-=+-.|.|.. + + . + ...+.+.+++..+.+..| + +-+
T Consensus 80 ~~~eeI~~ea~~l~-~~G~kEI~L~gg~~~------d----~--~------~----~~~~~l~~Ll~~I~~~~p~irI~~ 136 (289)
T PRK05481 80 LDPDEPERVAEAVA-RMGLKYVVITSVDRD------D----L--P------D----GGAQHFAETIRAIRELNPGTTIEV 136 (289)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEEEEeeCC------C----c--c------c----ccHHHHHHHHHHHHhhCCCcEEEE
Confidence 46799999999865 688864334444421 0 0 0 0 011234444444333345 1 222
Q ss_pred cCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeeccccccHHHHHHHHHHHHHc--CCcE-
Q 040341 107 EDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRA--GWGV- 183 (251)
Q Consensus 107 EDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqiGtlte~l~~~~~a~~~--g~~~- 183 (251)
-.|......+....|.+. |.++.-.+++ ++ .++.+. +++-.|..+.+++++.+++. |+.+
T Consensus 137 l~~~~~~~~e~L~~l~~a-g~~i~~~~~e---ts-~~vlk~------------m~r~~t~e~~le~i~~ar~~~pgi~~~ 199 (289)
T PRK05481 137 LIPDFRGRMDALLTVLDA-RPDVFNHNLE---TV-PRLYKR------------VRPGADYERSLELLKRAKELHPGIPTK 199 (289)
T ss_pred EccCCCCCHHHHHHHHhc-Ccceeecccc---Ch-HHHHHH------------hCCCCCHHHHHHHHHHHHHhCCCCeEe
Confidence 233222233556666554 3333333444 23 333332 23335999999999999999 8876
Q ss_pred ---EEecCCCCCCchhHhhhhhhcccCccccCC------------CCchhHHHHhhHHHHHHHHhCCCccccCcccc
Q 040341 184 ---MASHRSGETEDTFIADLSVGLATGQIKTGA------------PCRSERLAKYNQLLRIEEELGPAAIYAGTKFR 245 (251)
Q Consensus 184 ---ivs~rsgEt~d~~iadLAva~~~~~ik~G~------------~~r~Er~aKyN~llrie~~l~~~~~~~~~~~~ 245 (251)
|||+ |||+.++..+|..--..++-..+. +.....-..+++|..|..++|=..+++|.--|
T Consensus 200 t~~IvGf--GET~ed~~~tl~~lrel~~d~v~if~Ys~pa~k~~~v~~~~k~~r~~~l~~~~~~i~~~~~~~~~~~~ 274 (289)
T PRK05481 200 SGLMVGL--GETDEEVLEVMDDLRAAGVDILTIGQYLQPSRKHLPVERYVTPEEFDEYKEIALELGFLHVASGPLVR 274 (289)
T ss_pred eeeEEEC--CCCHHHHHHHHHHHHhcCCCEEEEEccCCCccccCCCCCcCCHHHHHHHHHHHHHcCchheEecCccc
Confidence 8888 999999988887654333222221 12233455678999999999976666664333
No 67
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=92.48 E-value=3 Score=37.26 Aligned_cols=140 Identities=9% Similarity=0.060 Sum_probs=90.6
Q ss_pred CCccChhhHHHHHHHhhhcCCceeecC--------------CCCcccHHHHHHHHhhhC-CceEEEcccccccCHHHHHH
Q 040341 82 SQKVSGDGLKNVYRSFISDHPIVSIED--------------PFDQDDWEHHAELTGKIG-RHVQIVGDDLLVTNPKRVEK 146 (251)
Q Consensus 82 ~~~~s~~elid~~~~l~~~ypI~~IED--------------P~~e~D~~~~~~l~~~lg-~~~~ivgDdl~vtn~~~i~~ 146 (251)
+..++.++.+.++.. +.+.+|-.||= |...++|+.-..+.+... .+..+..+- ...+++++++
T Consensus 16 ~~~~~~~~k~~i~~~-L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~-~~~~~~~i~~ 93 (263)
T cd07943 16 RHQFTLEQVRAIARA-LDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVLLLP-GIGTVDDLKM 93 (263)
T ss_pred CeecCHHHHHHHHHH-HHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEEecC-CccCHHHHHH
Confidence 357899999998887 57778888876 456788887777765543 233333332 3557889998
Q ss_pred HHhccCcceeEe--eccccccHHHHHHHHHHHHHcCCcEEEec-CCCCCCchhHhhhh---hhcccCccccCCCC---ch
Q 040341 147 AIKEKTCNALLL--KVNQIGSVTESIEAVKMSKRAGWGVMASH-RSGETEDTFIADLS---VGLATGQIKTGAPC---RS 217 (251)
Q Consensus 147 ~i~~~a~n~ilI--K~nqiGtlte~l~~~~~a~~~g~~~ivs~-rsgEt~d~~iadLA---va~~~~~ik~G~~~---r~ 217 (251)
+.+.+ .+.+-| ..|. +....++++.|++.|+.+.++- ..+.++..++.+++ ...++..|-..+.. ..
T Consensus 94 a~~~g-~~~iri~~~~s~---~~~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~P 169 (263)
T cd07943 94 AADLG-VDVVRVATHCTE---ADVSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYGADCVYVTDSAGAMLP 169 (263)
T ss_pred HHHcC-CCEEEEEechhh---HHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCcCH
Confidence 88764 444443 3443 3578889999999999987765 34556667776654 44566666555443 34
Q ss_pred hHHHHhhHHH
Q 040341 218 ERLAKYNQLL 227 (251)
Q Consensus 218 Er~aKyN~ll 227 (251)
+++.++=+.+
T Consensus 170 ~~v~~lv~~l 179 (263)
T cd07943 170 DDVRERVRAL 179 (263)
T ss_pred HHHHHHHHHH
Confidence 4444443333
No 68
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=92.33 E-value=4.1 Score=36.27 Aligned_cols=132 Identities=11% Similarity=0.112 Sum_probs=85.9
Q ss_pred CCccChhhHHHHHHHhhhcCCceeecCCC---CcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEe
Q 040341 82 SQKVSGDGLKNVYRSFISDHPIVSIEDPF---DQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLL 158 (251)
Q Consensus 82 ~~~~s~~elid~~~~l~~~ypI~~IEDP~---~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilI 158 (251)
+..+|.++.+.++.. +++.++-.||=.+ .++||+..+.+.+... ++.+.. +...+++.++.+.+.+. +.+.+
T Consensus 14 ~~~~~~~~k~~i~~~-L~~~Gv~~iE~g~p~~~~~~~e~~~~l~~~~~-~~~~~~--~~r~~~~~v~~a~~~g~-~~i~i 88 (259)
T cd07939 14 GVAFSREEKLAIARA-LDEAGVDEIEVGIPAMGEEEREAIRAIVALGL-PARLIV--WCRAVKEDIEAALRCGV-TAVHI 88 (259)
T ss_pred CCCCCHHHHHHHHHH-HHHcCCCEEEEecCCCCHHHHHHHHHHHhcCC-CCEEEE--eccCCHHHHHHHHhCCc-CEEEE
Confidence 357899999887777 5888988888754 5677888888876432 333331 12258899988877643 33332
Q ss_pred --eccc-----------cccHHHHHHHHHHHHHcCCcEEEecC-CCCCCchhHhhhh---hhcccCccccCCCCchh
Q 040341 159 --KVNQ-----------IGSVTESIEAVKMSKRAGWGVMASHR-SGETEDTFIADLS---VGLATGQIKTGAPCRSE 218 (251)
Q Consensus 159 --K~nq-----------iGtlte~l~~~~~a~~~g~~~ivs~r-sgEt~d~~iadLA---va~~~~~ik~G~~~r~E 218 (251)
..+. --.+....++++.|++.|+.+.++.. ++.++..++..++ +..++..|-..+..+.-
T Consensus 89 ~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~ 165 (259)
T cd07939 89 SIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASRADPDFLIEFAEVAQEAGADRLRFADTVGIL 165 (259)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCCCCHHHHHHHHHHHHHCCCCEEEeCCCCCCC
Confidence 1211 11244556889999999999988874 3456677777665 45667777666554433
No 69
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=92.13 E-value=2.3 Score=38.18 Aligned_cols=101 Identities=12% Similarity=0.257 Sum_probs=74.9
Q ss_pred ccChhhHHHHHHHhhhcCCceee--cCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeecc
Q 040341 84 KVSGDGLKNVYRSFISDHPIVSI--EDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVN 161 (251)
Q Consensus 84 ~~s~~elid~~~~l~~~ypI~~I--EDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~n 161 (251)
.+++.++...|.+. -..-+|+ |..+..-+++.+....+.+ ++||.--| |+.++..|..+... .++++++=..
T Consensus 60 ~~d~~~~A~~y~~~--GA~aISVlTe~~~F~Gs~~~l~~v~~~v--~~PvL~KD-FIid~~QI~ea~~~-GADavLLI~~ 133 (247)
T PRK13957 60 DYHPVQIAKTYETL--GASAISVLTDQSYFGGSLEDLKSVSSEL--KIPVLRKD-FILDEIQIREARAF-GASAILLIVR 133 (247)
T ss_pred CCCHHHHHHHHHHC--CCcEEEEEcCCCcCCCCHHHHHHHHHhc--CCCEEecc-ccCCHHHHHHHHHc-CCCEEEeEHh
Confidence 35677776666652 1232233 6667789999999999988 78999999 89999999998874 5677776544
Q ss_pred ccccHHHHHHHHHHHHHcCCcEEEecCCCC
Q 040341 162 QIGSVTESIEAVKMSKRAGWGVMASHRSGE 191 (251)
Q Consensus 162 qiGtlte~l~~~~~a~~~g~~~ivs~rsgE 191 (251)
-. +-.+..+.++.|++.|+.++|-.++.+
T Consensus 134 ~L-~~~~l~~l~~~a~~lGle~LVEVh~~~ 162 (247)
T PRK13957 134 IL-TPSQIKSFLKHASSLGMDVLVEVHTED 162 (247)
T ss_pred hC-CHHHHHHHHHHHHHcCCceEEEECCHH
Confidence 33 344677889999999999999887544
No 70
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=91.97 E-value=3.6 Score=38.73 Aligned_cols=142 Identities=8% Similarity=0.084 Sum_probs=91.1
Q ss_pred CCccChhhHHHHHHHhhhcCCceeecCCC---CcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcce-eE
Q 040341 82 SQKVSGDGLKNVYRSFISDHPIVSIEDPF---DQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNA-LL 157 (251)
Q Consensus 82 ~~~~s~~elid~~~~l~~~ypI~~IEDP~---~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~-il 157 (251)
+..+|.+|.+.++.. +++.++-.||=.| .++||+....+.+... ++.++. +...+.++++.+.+.+.-.. +.
T Consensus 17 ~~~~s~~~k~~ia~~-L~~~Gv~~IEvG~p~~~~~~~e~i~~i~~~~~-~~~i~~--~~r~~~~di~~a~~~g~~~i~i~ 92 (365)
T TIGR02660 17 GVAFTAAEKLAIARA-LDEAGVDELEVGIPAMGEEERAVIRAIVALGL-PARLMA--WCRARDADIEAAARCGVDAVHIS 92 (365)
T ss_pred CCCCCHHHHHHHHHH-HHHcCCCEEEEeCCCCCHHHHHHHHHHHHcCC-CcEEEE--EcCCCHHHHHHHHcCCcCEEEEE
Confidence 357899999897777 5888999998854 4677888888876632 344442 22368999999887654322 22
Q ss_pred eeccc-------cccHHHHH----HHHHHHHHcCCcEEEecCC-CCCCchhHhhhh---hhcccCccccCCC---CchhH
Q 040341 158 LKVNQ-------IGSVTESI----EAVKMSKRAGWGVMASHRS-GETEDTFIADLS---VGLATGQIKTGAP---CRSER 219 (251)
Q Consensus 158 IK~nq-------iGtlte~l----~~~~~a~~~g~~~ivs~rs-gEt~d~~iadLA---va~~~~~ik~G~~---~r~Er 219 (251)
+..+- =.+..+++ +++++|++.|+.+.++... +.++..+++.++ ...++..|...+. ...++
T Consensus 93 ~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~DT~G~~~P~~ 172 (365)
T TIGR02660 93 IPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGEDASRADPDFLVELAEVAAEAGADRFRFADTVGILDPFS 172 (365)
T ss_pred EccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecCCCCCCHHHHHHHHHHHHHcCcCEEEEcccCCCCCHHH
Confidence 33321 12344444 8899999999999988743 457778887775 4456666654443 34455
Q ss_pred HHHhhHHH
Q 040341 220 LAKYNQLL 227 (251)
Q Consensus 220 ~aKyN~ll 227 (251)
+.++=+.+
T Consensus 173 v~~lv~~l 180 (365)
T TIGR02660 173 TYELVRAL 180 (365)
T ss_pred HHHHHHHH
Confidence 54443333
No 71
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=91.87 E-value=0.81 Score=43.08 Aligned_cols=103 Identities=18% Similarity=0.223 Sum_probs=78.8
Q ss_pred hHHHHHHHhhhcCC--ceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeecccccc-
Q 040341 89 GLKNVYRSFISDHP--IVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGS- 165 (251)
Q Consensus 89 elid~~~~l~~~yp--I~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqiGt- 165 (251)
.-+....+| .+-+ |+=+==| +.+|-++..++.+++ ++|+|+|-- .+++.+-.+++. .+..+=|-|+.||.
T Consensus 43 atv~Qi~~L-~~aGceiVRvav~-~~~~a~al~~I~~~~--~iPlvADIH--Fd~~lAl~a~~~-G~~~iRINPGNig~~ 115 (360)
T PRK00366 43 ATVAQIKRL-ARAGCEIVRVAVP-DMEAAAALPEIKKQL--PVPLVADIH--FDYRLALAAAEA-GADALRINPGNIGKR 115 (360)
T ss_pred HHHHHHHHH-HHcCCCEEEEccC-CHHHHHhHHHHHHcC--CCCEEEecC--CCHHHHHHHHHh-CCCEEEECCCCCCch
Confidence 334445553 3434 6655434 457889999999999 899999964 488888888765 46788999999999
Q ss_pred HHHHHHHHHHHHHcCCcEEEecCCCCCCchhHh
Q 040341 166 VTESIEAVKMSKRAGWGVMASHRSGETEDTFIA 198 (251)
Q Consensus 166 lte~l~~~~~a~~~g~~~ivs~rsgEt~d~~ia 198 (251)
-....++++.|+++|+++-||-.+|--+..++.
T Consensus 116 ~~~v~~vv~~ak~~~ipIRIGvN~GSL~~~~~~ 148 (360)
T PRK00366 116 DERVREVVEAAKDYGIPIRIGVNAGSLEKDLLE 148 (360)
T ss_pred HHHHHHHHHHHHHCCCCEEEecCCccChHHHHH
Confidence 667788999999999999999998877655444
No 72
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=91.72 E-value=1.4 Score=38.28 Aligned_cols=135 Identities=18% Similarity=0.224 Sum_probs=85.6
Q ss_pred CccChhhHHHHHHHhhhcCCceeecCC---CCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHh----ccCcce
Q 040341 83 QKVSGDGLKNVYRSFISDHPIVSIEDP---FDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIK----EKTCNA 155 (251)
Q Consensus 83 ~~~s~~elid~~~~l~~~ypI~~IEDP---~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~----~~a~n~ 155 (251)
..++.++.++++.. +++.+|-+||=+ ..++||+..+.+.+.... ..+.+- ...+.+.++++++ .+....
T Consensus 9 ~~~~~~~k~~i~~~-L~~~Gv~~iEvg~~~~~~~~~~~v~~~~~~~~~-~~~~~~--~~~~~~~i~~~~~~~~~~g~~~i 84 (237)
T PF00682_consen 9 VAFSTEEKLEIAKA-LDEAGVDYIEVGFPFASEDDFEQVRRLREALPN-ARLQAL--CRANEEDIERAVEAAKEAGIDII 84 (237)
T ss_dssp TT--HHHHHHHHHH-HHHHTTSEEEEEHCTSSHHHHHHHHHHHHHHHS-SEEEEE--EESCHHHHHHHHHHHHHTTSSEE
T ss_pred CCcCHHHHHHHHHH-HHHhCCCEEEEcccccCHHHHHHhhhhhhhhcc-ccccee--eeehHHHHHHHHHhhHhccCCEE
Confidence 45889998887776 588888888876 557889988888877754 444332 3457777887665 333322
Q ss_pred -eEeeccc-----------cccHHHHHHHHHHHHHcCCcEEEec-CCCCCCchhHhhhhhhc---ccCccccCCC---Cc
Q 040341 156 -LLLKVNQ-----------IGSVTESIEAVKMSKRAGWGVMASH-RSGETEDTFIADLSVGL---ATGQIKTGAP---CR 216 (251)
Q Consensus 156 -ilIK~nq-----------iGtlte~l~~~~~a~~~g~~~ivs~-rsgEt~d~~iadLAva~---~~~~ik~G~~---~r 216 (251)
+.+..|. -..+..+.++++.|++.|+.+.++. .+..++..++.+++-.+ ++..|..-+. ..
T Consensus 85 ~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~Dt~G~~~ 164 (237)
T PF00682_consen 85 RIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGADIIYLADTVGIMT 164 (237)
T ss_dssp EEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEEEEETTS-S-
T ss_pred EecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCeEEEeeCccCCcC
Confidence 2222222 1227778889999999999999987 44667777777665443 5665554433 34
Q ss_pred hhHHH
Q 040341 217 SERLA 221 (251)
Q Consensus 217 ~Er~a 221 (251)
.+++.
T Consensus 165 P~~v~ 169 (237)
T PF00682_consen 165 PEDVA 169 (237)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 73
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=91.62 E-value=3.9 Score=36.91 Aligned_cols=140 Identities=19% Similarity=0.173 Sum_probs=89.0
Q ss_pred CccChhhHHHHHHHhhhcCCceeecCCC-----------CcccHHHHHHHHhhhCCceEEE----cccccc-------cC
Q 040341 83 QKVSGDGLKNVYRSFISDHPIVSIEDPF-----------DQDDWEHHAELTGKIGRHVQIV----GDDLLV-------TN 140 (251)
Q Consensus 83 ~~~s~~elid~~~~l~~~ypI~~IEDP~-----------~e~D~~~~~~l~~~lg~~~~iv----gDdl~v-------tn 140 (251)
..++.+|.+.+... +++.++-+||=.+ .++||+....+.+... ++.+. ++.+.- -+
T Consensus 16 ~~~~~~~~~~ia~~-L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~-~~~l~~~~r~~~~~~~~~~p~~~~ 93 (275)
T cd07937 16 TRMRTEDMLPIAEA-LDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKAMP-NTPLQMLLRGQNLVGYRHYPDDVV 93 (275)
T ss_pred eeccHHHHHHHHHH-HHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHhCC-CCceehhcccccccCccCCCcHHH
Confidence 46899999998776 5888999999866 7889888888876653 33333 121100 04
Q ss_pred HHHHHHHHhccCcc-eeEeeccccccHHHHHHHHHHHHHcCCcEEE--e-cCCCCCCchhHhhh---hhhcccCccccCC
Q 040341 141 PKRVEKAIKEKTCN-ALLLKVNQIGSVTESIEAVKMSKRAGWGVMA--S-HRSGETEDTFIADL---SVGLATGQIKTGA 213 (251)
Q Consensus 141 ~~~i~~~i~~~a~n-~ilIK~nqiGtlte~l~~~~~a~~~g~~~iv--s-~rsgEt~d~~iadL---Ava~~~~~ik~G~ 213 (251)
..+++.+.+.+.-- -+.+.+|. +....++++.|++.|..+.+ + ..++.+++.++.++ +...++..|...+
T Consensus 94 ~~di~~~~~~g~~~iri~~~~~~---~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~D 170 (275)
T cd07937 94 ELFVEKAAKNGIDIFRIFDALND---VRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSICIKD 170 (275)
T ss_pred HHHHHHHHHcCCCEEEEeecCCh---HHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 56667766554221 12333444 67888899999999988764 3 23466777777766 4555677766655
Q ss_pred CCc---hhHHHHhhHHH
Q 040341 214 PCR---SERLAKYNQLL 227 (251)
Q Consensus 214 ~~r---~Er~aKyN~ll 227 (251)
..+ .+++.++=+.+
T Consensus 171 T~G~~~P~~v~~lv~~l 187 (275)
T cd07937 171 MAGLLTPYAAYELVKAL 187 (275)
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 544 35554444433
No 74
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=91.18 E-value=4.8 Score=39.93 Aligned_cols=131 Identities=11% Similarity=0.095 Sum_probs=81.7
Q ss_pred CCccChhhHHHHHHHhhhcCCceeecCCC---CcccHHHHHHHHh-hhCCceEEEc------ccccccCHHHHHHHHhcc
Q 040341 82 SQKVSGDGLKNVYRSFISDHPIVSIEDPF---DQDDWEHHAELTG-KIGRHVQIVG------DDLLVTNPKRVEKAIKEK 151 (251)
Q Consensus 82 ~~~~s~~elid~~~~l~~~ypI~~IEDP~---~e~D~~~~~~l~~-~lg~~~~ivg------Ddl~vtn~~~i~~~i~~~ 151 (251)
+..+|.+|.++++.. +++.++-.||=.| .++|++.|..+.+ .+ ..+.++. .|+...+-..++.+...+
T Consensus 21 g~~~s~e~Kl~ia~~-L~~~Gvd~IEvG~p~as~~d~~~~~~i~~~~l-~~~~i~~~~~~~~~~i~~~~d~~~e~~~~~g 98 (524)
T PRK12344 21 GISFSVEDKLRIARK-LDELGVDYIEGGWPGSNPKDTEFFKRAKELKL-KHAKLAAFGSTRRAGVSAEEDPNLQALLDAG 98 (524)
T ss_pred CCCCCHHHHHHHHHH-HHHcCCCEEEEcCCcCChhHHHHHHHHHHhCC-CCcEEEEEeeccccCCCcccHHHHHHHHhCC
Confidence 457999999998887 5888999999855 6788999998875 22 2344443 122222333445554433
Q ss_pred CcceeE-eec---------c--ccccHHHHHHHHHHHHHcCCcEEEecC----CCCCCchhHhhhh---hhcccCccccC
Q 040341 152 TCNALL-LKV---------N--QIGSVTESIEAVKMSKRAGWGVMASHR----SGETEDTFIADLS---VGLATGQIKTG 212 (251)
Q Consensus 152 a~n~il-IK~---------n--qiGtlte~l~~~~~a~~~g~~~ivs~r----sgEt~d~~iadLA---va~~~~~ik~G 212 (251)
....-+ ++. | +--.+..+.+++++|+++|..+.++.. ...++..|+.+++ ...++..+..-
T Consensus 99 ~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~~e~~~Da~r~d~~~l~~~~~~~~~~Gad~i~l~ 178 (524)
T PRK12344 99 TPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVIFDAEHFFDGYKANPEYALATLKAAAEAGADWVVLC 178 (524)
T ss_pred CCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEccccccccccCCHHHHHHHHHHHHhCCCCeEEEc
Confidence 222111 111 1 122455566788899999999988765 2356777777765 55667776555
Q ss_pred CC
Q 040341 213 AP 214 (251)
Q Consensus 213 ~~ 214 (251)
+.
T Consensus 179 DT 180 (524)
T PRK12344 179 DT 180 (524)
T ss_pred cC
Confidence 44
No 75
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=90.74 E-value=4 Score=37.40 Aligned_cols=114 Identities=20% Similarity=0.242 Sum_probs=70.3
Q ss_pred CCCccChhhHHHHHHHhhhcCC-c--eeec---CCCCcccHHHHHHHHhhhCCce-EEEcccccccCHHHHHHHHhccCc
Q 040341 81 GSQKVSGDGLKNVYRSFISDHP-I--VSIE---DPFDQDDWEHHAELTGKIGRHV-QIVGDDLLVTNPKRVEKAIKEKTC 153 (251)
Q Consensus 81 ~~~~~s~~elid~~~~l~~~yp-I--~~IE---DP~~e~D~~~~~~l~~~lg~~~-~ivgDdl~vtn~~~i~~~i~~~a~ 153 (251)
.+...+.+.+.++|..+ .++| + ++|+ |.+.++..+.++.+.+. |..+ .-+|=+. .+.+.++
T Consensus 87 t~t~l~~~~L~~l~~~i-~~~~~~~~isi~trpd~l~~e~l~~L~~l~~~-G~~~~i~lGlQS--~~d~~L~-------- 154 (302)
T TIGR01212 87 TNTYAPVEVLKEMYEQA-LSYDDVVGLSVGTRPDCVPDEVLDLLAEYVER-GYEVWVELGLQT--AHDKTLK-------- 154 (302)
T ss_pred CcCCCCHHHHHHHHHHH-hCCCCEEEEEEEecCCcCCHHHHHHHHHhhhC-CceEEEEEccCc--CCHHHHH--------
Confidence 35678888988888875 4576 3 3565 66766666666666443 3222 2245441 2333333
Q ss_pred ceeEeeccccccHHHHHHHHHHHHHcCCcEEEe---cCCCCCCchhHhhh--hhhcccCcccc
Q 040341 154 NALLLKVNQIGSVTESIEAVKMSKRAGWGVMAS---HRSGETEDTFIADL--SVGLATGQIKT 211 (251)
Q Consensus 154 n~ilIK~nqiGtlte~l~~~~~a~~~g~~~ivs---~rsgEt~d~~iadL--Ava~~~~~ik~ 211 (251)
++|+--++.+.+++++.++++|+.+.+. .--|||.++++..+ +..++...++.
T Consensus 155 -----~i~Rg~t~~~~~~ai~~l~~~gi~v~~~lI~GlPget~e~~~~t~~~l~~l~~d~i~i 212 (302)
T TIGR01212 155 -----KINRGHDFACYVDAVKRARKRGIKVCSHVILGLPGEDREEMMETAKIVSLLDVDGIKI 212 (302)
T ss_pred -----HHcCcChHHHHHHHHHHHHHcCCEEEEeEEECCCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 3455558899999999999999987332 23478887776544 44555555553
No 76
>PRK09389 (R)-citramalate synthase; Provisional
Probab=90.45 E-value=4.7 Score=39.60 Aligned_cols=130 Identities=14% Similarity=0.163 Sum_probs=86.6
Q ss_pred CCccChhhHHHHHHHhhhcCCceeecCCC---CcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcce-eE
Q 040341 82 SQKVSGDGLKNVYRSFISDHPIVSIEDPF---DQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNA-LL 157 (251)
Q Consensus 82 ~~~~s~~elid~~~~l~~~ypI~~IEDP~---~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~-il 157 (251)
+..+|.+|-+.++.. +++.++-.||=.| .++||+....+.+.- ..+.|++- .-+..++++.+++.+.-.. +.
T Consensus 18 g~~~s~e~K~~ia~~-L~~~Gv~~IE~G~p~~~~~d~e~v~~i~~~~-~~~~i~a~--~r~~~~di~~a~~~g~~~v~i~ 93 (488)
T PRK09389 18 GVSLTPEEKLEIARK-LDELGVDVIEAGSAITSEGEREAIKAVTDEG-LNAEICSF--ARAVKVDIDAALECDVDSVHLV 93 (488)
T ss_pred CCCcCHHHHHHHHHH-HHHcCCCEEEEeCCcCCHHHHHHHHHHHhcC-CCcEEEee--cccCHHHHHHHHhCCcCEEEEE
Confidence 467899998898887 5999999999865 578899888887542 34566652 3346888998887654321 22
Q ss_pred eecccc-----------ccHHHHHHHHHHHHHcCCcEEEecC-CCCCCchhHhhhh---hhcccCccccCCCC
Q 040341 158 LKVNQI-----------GSVTESIEAVKMSKRAGWGVMASHR-SGETEDTFIADLS---VGLATGQIKTGAPC 215 (251)
Q Consensus 158 IK~nqi-----------Gtlte~l~~~~~a~~~g~~~ivs~r-sgEt~d~~iadLA---va~~~~~ik~G~~~ 215 (251)
++.+-+ --+..+.+++++|++.|+.+.++.. .+.++..|+.+++ ...++..|..-+..
T Consensus 94 ~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~DTv 166 (488)
T PRK09389 94 VPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGEDASRADLDFLKELYKAGIEAGADRICFCDTV 166 (488)
T ss_pred EccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHHHhCCCCEEEEecCC
Confidence 333211 2345566778899999999988774 3446677776665 44456666544443
No 77
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=90.24 E-value=2.4 Score=40.13 Aligned_cols=126 Identities=15% Similarity=0.196 Sum_probs=83.8
Q ss_pred CCccChhhHHHHHHHhhhcCCceeecCC---CCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcce-eE
Q 040341 82 SQKVSGDGLKNVYRSFISDHPIVSIEDP---FDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNA-LL 157 (251)
Q Consensus 82 ~~~~s~~elid~~~~l~~~ypI~~IEDP---~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~-il 157 (251)
+..+|.+|-+.++.. +++.++-.||=. ..++||+....+.+. +.++.++.- .-.+.++++.+.+.+.-.. +.
T Consensus 20 ~~~~s~e~k~~ia~~-L~~~GV~~IE~G~p~~~~~~~e~i~~i~~~-~~~~~i~~~--~r~~~~di~~a~~~g~~~i~i~ 95 (378)
T PRK11858 20 GVVFTNEEKLAIARM-LDEIGVDQIEAGFPAVSEDEKEAIKAIAKL-GLNASILAL--NRAVKSDIDASIDCGVDAVHIF 95 (378)
T ss_pred CCCCCHHHHHHHHHH-HHHhCCCEEEEeCCCcChHHHHHHHHHHhc-CCCeEEEEE--cccCHHHHHHHHhCCcCEEEEE
Confidence 457899999887777 588899999864 356777877777654 334555543 2346888998887654321 22
Q ss_pred eecccc-------ccHHH----HHHHHHHHHHcCCcEEEec-CCCCCCchhHhhhhh---hcccCcccc
Q 040341 158 LKVNQI-------GSVTE----SIEAVKMSKRAGWGVMASH-RSGETEDTFIADLSV---GLATGQIKT 211 (251)
Q Consensus 158 IK~nqi-------Gtlte----~l~~~~~a~~~g~~~ivs~-rsgEt~d~~iadLAv---a~~~~~ik~ 211 (251)
++.+.+ .|..+ +.++++.|++.|+.+.++. ..+.++..++.+++- ..++..|..
T Consensus 96 ~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~I~l 164 (378)
T PRK11858 96 IATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEEAGADRVRF 164 (378)
T ss_pred EcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 333321 34444 4458889999999999986 455677888887764 445555543
No 78
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=89.54 E-value=1.3 Score=41.52 Aligned_cols=102 Identities=15% Similarity=0.215 Sum_probs=75.1
Q ss_pred HHHHHHHhhhcCC--ceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeeccccccHH
Q 040341 90 LKNVYRSFISDHP--IVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVT 167 (251)
Q Consensus 90 lid~~~~l~~~yp--I~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqiGtlt 167 (251)
-+....+| .+-+ |+=+==| +.++-++..++.+.. ++|+|+|--| +....-.+++. .+..+=|-|+.||.-.
T Consensus 36 tv~QI~~L-~~aGceiVRvavp-~~~~A~al~~I~~~~--~iPlVADIHF--d~~lAl~a~~~-g~dkiRINPGNig~~e 108 (346)
T TIGR00612 36 TVAQIRAL-EEAGCDIVRVTVP-DRESAAAFEAIKEGT--NVPLVADIHF--DYRLAALAMAK-GVAKVRINPGNIGFRE 108 (346)
T ss_pred HHHHHHHH-HHcCCCEEEEcCC-CHHHHHhHHHHHhCC--CCCEEEeeCC--CcHHHHHHHHh-ccCeEEECCCCCCCHH
Confidence 34444553 3333 6544433 346778888888877 8999999644 55555555543 6778899999999999
Q ss_pred HHHHHHHHHHHcCCcEEEecCCCCCCchhHh
Q 040341 168 ESIEAVKMSKRAGWGVMASHRSGETEDTFIA 198 (251)
Q Consensus 168 e~l~~~~~a~~~g~~~ivs~rsgEt~d~~ia 198 (251)
...++++.|+++|+++-||-.+|--+..++.
T Consensus 109 ~v~~vv~~ak~~~ipIRIGVN~GSL~~~~~~ 139 (346)
T TIGR00612 109 RVRDVVEKARDHGKAMRIGVNHGSLERRLLE 139 (346)
T ss_pred HHHHHHHHHHHCCCCEEEecCCCCCcHHHHH
Confidence 9999999999999999999998877654443
No 79
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=88.62 E-value=2.9 Score=38.12 Aligned_cols=138 Identities=20% Similarity=0.161 Sum_probs=83.9
Q ss_pred CCccChhhHHHHHHHhhhcCCceeecC---------CCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccC
Q 040341 82 SQKVSGDGLKNVYRSFISDHPIVSIED---------PFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKT 152 (251)
Q Consensus 82 ~~~~s~~elid~~~~l~~~ypI~~IED---------P~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a 152 (251)
+..+|.+|.+.+... +++.+|-.||= |-..+.++..+.+.+.. .+.+.. .+.|.+.++++++.+.
T Consensus 20 ~~~~s~e~k~~ia~~-L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~~--~~~~~~---l~~~~~~ie~A~~~g~ 93 (287)
T PRK05692 20 KRFIPTADKIALIDR-LSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRRP--GVTYAA---LTPNLKGLEAALAAGA 93 (287)
T ss_pred CCCcCHHHHHHHHHH-HHHcCCCEEEeCCCcCcccccccccHHHHHHhhhccC--CCeEEE---EecCHHHHHHHHHcCC
Confidence 467899999887777 58889999985 33345566666665432 233331 3569999999988754
Q ss_pred cceeE-eec-------cccccHHH----HHHHHHHHHHcCCcEEE------ec-CCCCCCchhHhhhh---hhcccCccc
Q 040341 153 CNALL-LKV-------NQIGSVTE----SIEAVKMSKRAGWGVMA------SH-RSGETEDTFIADLS---VGLATGQIK 210 (251)
Q Consensus 153 ~n~il-IK~-------nqiGtlte----~l~~~~~a~~~g~~~iv------s~-rsgEt~d~~iadLA---va~~~~~ik 210 (251)
-..-+ +.. |.--|..| ..+++++|+++|..+.+ ++ -.+.++..++.+++ +..++..|.
T Consensus 94 ~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~ 173 (287)
T PRK05692 94 DEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVADVAERLFALGCYEIS 173 (287)
T ss_pred CEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCcEEE
Confidence 33222 222 22234444 56788999999998742 21 23456666766654 456676664
Q ss_pred cC---CCCchhHHHHhhH
Q 040341 211 TG---APCRSERLAKYNQ 225 (251)
Q Consensus 211 ~G---~~~r~Er~aKyN~ 225 (251)
.- +....+++..+=+
T Consensus 174 l~DT~G~~~P~~v~~lv~ 191 (287)
T PRK05692 174 LGDTIGVGTPGQVRAVLE 191 (287)
T ss_pred eccccCccCHHHHHHHHH
Confidence 43 3344555544333
No 80
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=88.53 E-value=7.6 Score=33.99 Aligned_cols=125 Identities=20% Similarity=0.269 Sum_probs=78.8
Q ss_pred CCccChhhHHHHHHHhhhcCCceeecCC---------CCcccHHHHHHHHhhhCCceEEEcccccccC-HHHHHHHHhcc
Q 040341 82 SQKVSGDGLKNVYRSFISDHPIVSIEDP---------FDQDDWEHHAELTGKIGRHVQIVGDDLLVTN-PKRVEKAIKEK 151 (251)
Q Consensus 82 ~~~~s~~elid~~~~l~~~ypI~~IEDP---------~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn-~~~i~~~i~~~ 151 (251)
+..+|.++.+.++..| ++.++-.||=. +.+++|+--+.+.+... ++.+.. .++| .+.++++.+.+
T Consensus 13 ~~~~s~e~~~~i~~~L-~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~-~~~~~~---l~~~~~~~i~~a~~~g 87 (265)
T cd03174 13 GATFSTEDKLEIAEAL-DEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVP-NVKLQA---LVRNREKGIERALEAG 87 (265)
T ss_pred CCCCCHHHHHHHHHHH-HHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccC-CcEEEE---EccCchhhHHHHHhCC
Confidence 3467999988888875 55555555432 44677777777776652 344432 3455 78888887765
Q ss_pred CcceeEee--cc---------c--cccHHHHHHHHHHHHHcCCcEEEec-CCCC--CCchhH---hhhhhhcccCccccC
Q 040341 152 TCNALLLK--VN---------Q--IGSVTESIEAVKMSKRAGWGVMASH-RSGE--TEDTFI---ADLSVGLATGQIKTG 212 (251)
Q Consensus 152 a~n~ilIK--~n---------q--iGtlte~l~~~~~a~~~g~~~ivs~-rsgE--t~d~~i---adLAva~~~~~ik~G 212 (251)
. ..+.|= .+ + -+.+..++++++.|++.|+.+.++- .... ++..++ +..+...++..+..-
T Consensus 88 ~-~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~ 166 (265)
T cd03174 88 V-DEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLK 166 (265)
T ss_pred c-CEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEec
Confidence 2 333332 22 1 1357889999999999999998877 3333 555554 444566667666543
No 81
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=88.47 E-value=4.3 Score=37.89 Aligned_cols=70 Identities=7% Similarity=0.184 Sum_probs=49.0
Q ss_pred ccChhhHHHHHHHhhhcCCc--e-----eecCCCCcc-------cHHH-HHHHHhhhCCceEEEcccccccCHHHHHHHH
Q 040341 84 KVSGDGLKNVYRSFISDHPI--V-----SIEDPFDQD-------DWEH-HAELTGKIGRHVQIVGDDLLVTNPKRVEKAI 148 (251)
Q Consensus 84 ~~s~~elid~~~~l~~~ypI--~-----~IEDP~~e~-------D~~~-~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i 148 (251)
.++.+|.+++.+. ++++++ + +.|+|.... .|.. .+++.+.+ ++||++.. .+++++.+++++
T Consensus 220 g~~~~e~~~i~~~-Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v--~iPVi~~G-~i~~~~~a~~~i 295 (353)
T cd02930 220 GSTWEEVVALAKA-LEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAV--DIPVIASN-RINTPEVAERLL 295 (353)
T ss_pred CCCHHHHHHHHHH-HHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhC--CCCEEEcC-CCCCHHHHHHHH
Confidence 3577888887776 577774 2 136665432 2333 35777777 78888888 588999999999
Q ss_pred hccCcceeE
Q 040341 149 KEKTCNALL 157 (251)
Q Consensus 149 ~~~a~n~il 157 (251)
+.+.++.|.
T Consensus 296 ~~g~~D~V~ 304 (353)
T cd02930 296 ADGDADMVS 304 (353)
T ss_pred HCCCCChhH
Confidence 998887654
No 82
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=88.37 E-value=8.3 Score=37.75 Aligned_cols=126 Identities=12% Similarity=0.119 Sum_probs=77.2
Q ss_pred CccChhhHHHHHHHhhhcCCc--eeecCCCCcccHHHHHHHHhhh---C-CceEEE----cccccccCHHHHHHHHhccC
Q 040341 83 QKVSGDGLKNVYRSFISDHPI--VSIEDPFDQDDWEHHAELTGKI---G-RHVQIV----GDDLLVTNPKRVEKAIKEKT 152 (251)
Q Consensus 83 ~~~s~~elid~~~~l~~~ypI--~~IEDP~~e~D~~~~~~l~~~l---g-~~~~iv----gDdl~vtn~~~i~~~i~~~a 152 (251)
+..+++..++-+..|.++|++ +.+.|.-.--+...+.+|.+.+ + .++... .|++ +.+.+.++...+.|
T Consensus 220 R~rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i-~~d~ell~~l~~aG- 297 (497)
T TIGR02026 220 RHRDPKKFVDEIEWLVRTHGVGFFILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDI-VRDADILHLYRRAG- 297 (497)
T ss_pred ecCCHHHHHHHHHHHHHHcCCCEEEEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccc-cCCHHHHHHHHHhC-
Confidence 356899999999998888874 4444432222444466665554 1 123322 2442 34566666554443
Q ss_pred cceeEe-----------eccccccHHHHHHHHHHHHHcCCcE----EEecCCCCCCchhHhh--hhhhcccCcccc
Q 040341 153 CNALLL-----------KVNQIGSVTESIEAVKMSKRAGWGV----MASHRSGETEDTFIAD--LSVGLATGQIKT 211 (251)
Q Consensus 153 ~n~ilI-----------K~nqiGtlte~l~~~~~a~~~g~~~----ivs~rsgEt~d~~iad--LAva~~~~~ik~ 211 (251)
|+.+.| +.++-.++.+..++++.++++|+.+ |+|- .+||.+++... ++..++..++-.
T Consensus 298 ~~~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~G~-P~et~e~~~~t~~~~~~l~~~~~~~ 372 (497)
T TIGR02026 298 LVHISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFITGF-ENETDETFEETYRQLLDWDPDQANW 372 (497)
T ss_pred CcEEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEEEC-CCCCHHHHHHHHHHHHHcCCCceEE
Confidence 444443 3467789999999999999999966 4444 47888777554 455555554443
No 83
>PRK00915 2-isopropylmalate synthase; Validated
Probab=87.88 E-value=6.3 Score=38.94 Aligned_cols=129 Identities=16% Similarity=0.194 Sum_probs=83.8
Q ss_pred CCccChhhHHHHHHHhhhcCCceeecCCC---CcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhc----cCcc
Q 040341 82 SQKVSGDGLKNVYRSFISDHPIVSIEDPF---DQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKE----KTCN 154 (251)
Q Consensus 82 ~~~~s~~elid~~~~l~~~ypI~~IEDP~---~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~----~a~n 154 (251)
+..+|.+|-+.++.. +++.+|-.||=.| .+.|++..+.+.+... .+.|++= .-++.++++.+.+. +...
T Consensus 20 g~~~s~e~K~~ia~~-L~~~Gv~~IE~G~p~~s~~d~~~v~~i~~~~~-~~~i~a~--~r~~~~did~a~~a~~~~~~~~ 95 (513)
T PRK00915 20 GASLTVEEKLQIAKQ-LERLGVDVIEAGFPASSPGDFEAVKRIARTVK-NSTVCGL--ARAVKKDIDAAAEALKPAEAPR 95 (513)
T ss_pred CCCCCHHHHHHHHHH-HHHcCCCEEEEcCCCCChHHHHHHHHHHhhCC-CCEEEEE--ccCCHHHHHHHHHHhhcCCCCE
Confidence 457899999998887 6999999999865 5789988888866543 3445421 12567888887742 2111
Q ss_pred -eeEeecccc-------ccHHH----HHHHHHHHHHcCCcEEEecCC-CCCCchhHhhhh---hhcccCccccCCC
Q 040341 155 -ALLLKVNQI-------GSVTE----SIEAVKMSKRAGWGVMASHRS-GETEDTFIADLS---VGLATGQIKTGAP 214 (251)
Q Consensus 155 -~ilIK~nqi-------Gtlte----~l~~~~~a~~~g~~~ivs~rs-gEt~d~~iadLA---va~~~~~ik~G~~ 214 (251)
.+.++.+-+ .+..| +.+++++|+++|..+.++... +.++..|+.+++ ...++..|..-+.
T Consensus 96 v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~f~~ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~DT 171 (513)
T PRK00915 96 IHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVEFSAEDATRTDLDFLCRVVEAAIDAGATTINIPDT 171 (513)
T ss_pred EEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEccC
Confidence 122333211 23444 458888999999999999843 456777777665 4446666654433
No 84
>PLN02321 2-isopropylmalate synthase
Probab=87.79 E-value=4.5 Score=41.09 Aligned_cols=133 Identities=17% Similarity=0.260 Sum_probs=84.0
Q ss_pred CCCccChhhHHHHHHHhhhcCCceeecC--C-CCcccHHHHHHHHhhhCCce-------EEEcccccccCHHHHHHHHhc
Q 040341 81 GSQKVSGDGLKNVYRSFISDHPIVSIED--P-FDQDDWEHHAELTGKIGRHV-------QIVGDDLLVTNPKRVEKAIKE 150 (251)
Q Consensus 81 ~~~~~s~~elid~~~~l~~~ypI~~IED--P-~~e~D~~~~~~l~~~lg~~~-------~ivgDdl~vtn~~~i~~~i~~ 150 (251)
++..+|.+|-++++.. +++.++-.||= | ..++|++..+.+.+.+.+.+ .||+ +..+|.++|+.+++-
T Consensus 101 ~g~~~s~eeKl~Ia~~-L~~lGVd~IEvGfP~~Sp~D~e~vr~i~~~~~~~v~~~~~v~~i~a--~~ra~~~dId~A~~a 177 (632)
T PLN02321 101 PGATLTSKEKLDIARQ-LAKLGVDIIEAGFPIASPDDLEAVKTIAKEVGNEVDEDGYVPVICG--LSRCNKKDIDAAWEA 177 (632)
T ss_pred CCCCCCHHHHHHHHHH-HHHcCCCEEEEeCcCCCccHHHHHHHHHHhcccCCCccccceeeee--ehhccHHhHHHHHHH
Confidence 3457999999998887 59999999994 4 34789999998877653321 1222 123488999888774
Q ss_pred --cCc---ceeEeeccc-------cccHHH----HHHHHHHHHHcCC-cEEEec-CCCCCCchhHhhh---hhhcccCcc
Q 040341 151 --KTC---NALLLKVNQ-------IGSVTE----SIEAVKMSKRAGW-GVMASH-RSGETEDTFIADL---SVGLATGQI 209 (251)
Q Consensus 151 --~a~---n~ilIK~nq-------iGtlte----~l~~~~~a~~~g~-~~ivs~-rsgEt~d~~iadL---Ava~~~~~i 209 (251)
++. =.+.++.+- --|..| +.+++++|+++|. .+.+|. ..+.++..|+..+ ++..++..|
T Consensus 178 l~~a~~~~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs~EDa~rtd~d~l~~~~~~a~~aGa~~I 257 (632)
T PLN02321 178 VKHAKRPRIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVEFSPEDAGRSDPEFLYRILGEVIKAGATTL 257 (632)
T ss_pred hcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEEecccCCCCCHHHHHHHHHHHHHcCCCEE
Confidence 221 112222211 124444 4557789999998 588877 3455776776555 455567776
Q ss_pred ccCCCCc
Q 040341 210 KTGAPCR 216 (251)
Q Consensus 210 k~G~~~r 216 (251)
...+.-+
T Consensus 258 ~L~DTvG 264 (632)
T PLN02321 258 NIPDTVG 264 (632)
T ss_pred Eeccccc
Confidence 6554443
No 85
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=87.49 E-value=4.8 Score=35.20 Aligned_cols=112 Identities=12% Similarity=0.032 Sum_probs=81.3
Q ss_pred cChhhHHHHHHHhhhcCCceeecCCCCcccHH-HHHHHHhhhCCc-eEEEcccccccCHHHHHHHHhccCcceeEeeccc
Q 040341 85 VSGDGLKNVYRSFISDHPIVSIEDPFDQDDWE-HHAELTGKIGRH-VQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQ 162 (251)
Q Consensus 85 ~s~~elid~~~~l~~~ypI~~IEDP~~e~D~~-~~~~l~~~lg~~-~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nq 162 (251)
.+.++.+.....| -+-+|-.||=+|.-.++. ..++|.++.+++ -.++|=- +|+++++++++++.|+- +++-|+-
T Consensus 22 ~~~~~a~~~~~al-~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaG-TV~~~~~~~~a~~aGA~--FivsP~~ 97 (213)
T PRK06552 22 ESKEEALKISLAV-IKGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAG-TVLDAVTARLAILAGAQ--FIVSPSF 97 (213)
T ss_pred CCHHHHHHHHHHH-HHCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeee-eCCCHHHHHHHHHcCCC--EEECCCC
Confidence 3667777766664 555888999999876654 477777777531 2467777 89999999999987654 5667754
Q ss_pred cccHHHHHHHHHHHHHcCCcEEEecCCCCCCchhHhhhhhhcccCcccc
Q 040341 163 IGSVTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLATGQIKT 211 (251)
Q Consensus 163 iGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d~~iadLAva~~~~~ik~ 211 (251)
.-++++.|+++|+.++-|..+.+- +.-|...++.++|.
T Consensus 98 ------~~~v~~~~~~~~i~~iPG~~T~~E-----~~~A~~~Gad~vkl 135 (213)
T PRK06552 98 ------NRETAKICNLYQIPYLPGCMTVTE-----IVTALEAGSEIVKL 135 (213)
T ss_pred ------CHHHHHHHHHcCCCEECCcCCHHH-----HHHHHHcCCCEEEE
Confidence 236777899999999999874432 55566778888887
No 86
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=86.33 E-value=1.6 Score=41.17 Aligned_cols=107 Identities=20% Similarity=0.282 Sum_probs=73.1
Q ss_pred ChhhHHHHHHHhhhcCC--ceeecCCCCcccHHHHHHHHhh---hCCceEEEcccccccCHHHHHHHHhccCcceeEeec
Q 040341 86 SGDGLKNVYRSFISDHP--IVSIEDPFDQDDWEHHAELTGK---IGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKV 160 (251)
Q Consensus 86 s~~elid~~~~l~~~yp--I~~IEDP~~e~D~~~~~~l~~~---lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~ 160 (251)
+.+.-++...+| .+.+ |+=+==| +.+|-....++.++ .|..+|+|.|-- .+++..-.+++. +..+=|-|
T Consensus 29 Dv~atv~QI~~L-~~aGceivRvavp-~~~~a~al~~I~~~l~~~g~~iPlVADIH--Fd~~lAl~a~~~--v~kiRINP 102 (359)
T PF04551_consen 29 DVEATVAQIKRL-EEAGCEIVRVAVP-DMEAAEALKEIKKRLRALGSPIPLVADIH--FDYRLALEAIEA--VDKIRINP 102 (359)
T ss_dssp -HHHHHHHHHHH-HHCT-SEEEEEE--SHHHHHHHHHHHHHHHCTT-SS-EEEEES--TTCHHHHHHHHC---SEEEE-T
T ss_pred cHHHHHHHHHHH-HHcCCCEEEEcCC-CHHHHHHHHHHHHhhccCCCCCCeeeecC--CCHHHHHHHHHH--hCeEEECC
Confidence 344445556664 4444 5543333 34677888888888 234899999964 478888888776 99999999
Q ss_pred ccc--------cc-HHHHHHHHHHHHHcCCcEEEecCCCCCCchhHh
Q 040341 161 NQI--------GS-VTESIEAVKMSKRAGWGVMASHRSGETEDTFIA 198 (251)
Q Consensus 161 nqi--------Gt-lte~l~~~~~a~~~g~~~ivs~rsgEt~d~~ia 198 (251)
+.| |. --..-++++.|+++|+++-||-.+|--+...+.
T Consensus 103 GNi~~~~~~~~g~~~~~~~~vv~~ake~~ipIRIGvN~GSL~~~~~~ 149 (359)
T PF04551_consen 103 GNIVDEFQEELGSIREKVKEVVEAAKERGIPIRIGVNSGSLEKDILE 149 (359)
T ss_dssp TTSS----SS-SS-HHHHHHHHHHHHHHT-EEEEEEEGGGS-HHHHH
T ss_pred CcccccccccccchHHHHHHHHHHHHHCCCCEEEecccccCcHHHHh
Confidence 999 88 666777899999999999999988776554443
No 87
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=85.99 E-value=3.6 Score=37.85 Aligned_cols=99 Identities=17% Similarity=0.323 Sum_probs=57.9
Q ss_pred CCCcHHHHHHHHHHHHhcCCcc--ceeeeeehhhhcccccCCcceeecCCCCCCCCCCccChhhHHHHHHHhhhcCCcee
Q 040341 28 IQESYEGFELLKTAIAKGGYIG--KIVIGMDVAASEFYDSKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHPIVS 105 (251)
Q Consensus 28 ~~~~eeal~~i~~Ai~~aGy~~--kI~iglD~Aase~~~~~~g~Y~l~~~~~~~d~~~~~s~~elid~~~~l~~~ypI~~ 105 (251)
+.+++.+.++|.+..+..+..- ||.+|.| -+.++.+++... +.++++-.
T Consensus 104 l~~p~~~~~iv~~~~~~~~~pvsvKiR~g~~----------------------------~~~~~~~~~~~~-l~~~G~~~ 154 (309)
T PF01207_consen 104 LKDPDLLAEIVKAVRKAVPIPVSVKIRLGWD----------------------------DSPEETIEFARI-LEDAGVSA 154 (309)
T ss_dssp GC-HHHHHHHHHHHHHH-SSEEEEEEESECT------------------------------CHHHHHHHHH-HHHTT--E
T ss_pred hcChHHhhHHHHhhhcccccceEEecccccc----------------------------cchhHHHHHHHH-hhhcccce
Confidence 4567777676666555555321 5555544 123455665555 57778655
Q ss_pred e-------cCCCC-cccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEe
Q 040341 106 I-------EDPFD-QDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLL 158 (251)
Q Consensus 106 I-------EDP~~-e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilI 158 (251)
| +|.+. .-||+..+++.+.+ +++|++.- -|++++++++..+.-.|.+++|
T Consensus 155 i~vH~Rt~~q~~~~~a~w~~i~~i~~~~--~ipvi~NG-dI~s~~d~~~~~~~tg~dgvMi 212 (309)
T PF01207_consen 155 ITVHGRTRKQRYKGPADWEAIAEIKEAL--PIPVIANG-DIFSPEDAERMLEQTGADGVMI 212 (309)
T ss_dssp EEEECS-TTCCCTS---HHHHHHCHHC---TSEEEEES-S--SHHHHHHHCCCH-SSEEEE
T ss_pred EEEecCchhhcCCcccchHHHHHHhhcc--cceeEEcC-ccCCHHHHHHHHHhcCCcEEEE
Confidence 4 44443 68999999999999 68999877 6899999999877655665554
No 88
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=85.74 E-value=22 Score=33.15 Aligned_cols=143 Identities=10% Similarity=0.078 Sum_probs=88.4
Q ss_pred CCccChhhHHHHHHHhhhcCCceeecC--------------CCCcccHHHHHHHHhhhCC-ceEEEcccccccCHHHHHH
Q 040341 82 SQKVSGDGLKNVYRSFISDHPIVSIED--------------PFDQDDWEHHAELTGKIGR-HVQIVGDDLLVTNPKRVEK 146 (251)
Q Consensus 82 ~~~~s~~elid~~~~l~~~ypI~~IED--------------P~~e~D~~~~~~l~~~lg~-~~~ivgDdl~vtn~~~i~~ 146 (251)
+..+|.++.+++... +++-++-.||= |....||+....+.+.+.. +..+...- -..+.++++.
T Consensus 18 ~~~f~~~~~~~ia~~-Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~~ll~p-g~~~~~dl~~ 95 (333)
T TIGR03217 18 RHQFTIEQVRAIAAA-LDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVAVLLLP-GIGTVHDLKA 95 (333)
T ss_pred CCcCCHHHHHHHHHH-HHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEEEEecc-CccCHHHHHH
Confidence 356899999998887 58888888876 5567899888888776642 23322221 1246889999
Q ss_pred HHhccCcceeEeeccccccHHHHHHHHHHHHHcCCcEEEec-CCCCCCchhHhhhh---hhcccCccccCCC---CchhH
Q 040341 147 AIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAGWGVMASH-RSGETEDTFIADLS---VGLATGQIKTGAP---CRSER 219 (251)
Q Consensus 147 ~i~~~a~n~ilIK~nqiGtlte~l~~~~~a~~~g~~~ivs~-rsgEt~d~~iadLA---va~~~~~ik~G~~---~r~Er 219 (251)
+.+.+. +.+-|-. ...-.-.+.+.++.+++.|+.+.+.- ++..+.+.++++++ ...++..+-.-+. ...++
T Consensus 96 a~~~gv-d~iri~~-~~~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~ 173 (333)
T TIGR03217 96 AYDAGA-RTVRVAT-HCTEADVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCVYIVDSAGAMLPDD 173 (333)
T ss_pred HHHCCC-CEEEEEe-ccchHHHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEEEEccCCCCCCHHH
Confidence 887653 3444321 12223457889999999999885444 23345666666655 5556655544333 34455
Q ss_pred HHHhhHHHH
Q 040341 220 LAKYNQLLR 228 (251)
Q Consensus 220 ~aKyN~llr 228 (251)
+..+=+.++
T Consensus 174 v~~~v~~l~ 182 (333)
T TIGR03217 174 VRDRVRALK 182 (333)
T ss_pred HHHHHHHHH
Confidence 544444433
No 89
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=84.92 E-value=20 Score=32.55 Aligned_cols=131 Identities=14% Similarity=0.167 Sum_probs=80.3
Q ss_pred CCCccChhhHHHHHHHhhhcCCceeecC--C-CCcccHHHHHHHHhhh---C--CceEEEcccccccCHHHHHHHHhccC
Q 040341 81 GSQKVSGDGLKNVYRSFISDHPIVSIED--P-FDQDDWEHHAELTGKI---G--RHVQIVGDDLLVTNPKRVEKAIKEKT 152 (251)
Q Consensus 81 ~~~~~s~~elid~~~~l~~~ypI~~IED--P-~~e~D~~~~~~l~~~l---g--~~~~ivgDdl~vtn~~~i~~~i~~~a 152 (251)
++..+|.+|-+++.+.|+++.+|-.||= | ..++|++.-.++...- + .++.+++ .+.|...++.+.+-+.
T Consensus 12 ~~~~~s~e~K~~i~~~L~~~~Gv~~IEvg~~~~s~~e~~av~~~~~~~~~~~~~~~~~~~a---~~~~~~~~~~A~~~g~ 88 (280)
T cd07945 12 SGVSFSPSEKLNIAKILLQELKVDRIEVASARVSEGEFEAVQKIIDWAAEEGLLDRIEVLG---FVDGDKSVDWIKSAGA 88 (280)
T ss_pred CCCccCHHHHHHHHHHHHHHhCCCEEEecCCCCCHHHHHHHHHHHHHhhhhccccCcEEEE---ecCcHHHHHHHHHCCC
Confidence 3567899999999998779989989988 4 4677776655554321 0 0122322 2456777888776644
Q ss_pred cceeE-ee-----------ccccccHHHHHHHHHHHHHcCCcEEEecCC-C---CCCchhHhhhh---hhcccCccccCC
Q 040341 153 CNALL-LK-----------VNQIGSVTESIEAVKMSKRAGWGVMASHRS-G---ETEDTFIADLS---VGLATGQIKTGA 213 (251)
Q Consensus 153 ~n~il-IK-----------~nqiGtlte~l~~~~~a~~~g~~~ivs~rs-g---Et~d~~iadLA---va~~~~~ik~G~ 213 (251)
-..-+ +. .+.--.+.+..+++++|++.|+.+.++-.. + .++..++.+++ +..++..|-..+
T Consensus 89 ~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~r~~~~~~~~~~~~~~~~G~~~i~l~D 168 (280)
T cd07945 89 KVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGMRDSPDYVFQLVDFLSDLPIKRIMLPD 168 (280)
T ss_pred CEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCCcCCHHHHHHHHHHHHHcCCCEEEecC
Confidence 33211 11 112234445567788999999998776641 1 45556766654 455666665444
Q ss_pred C
Q 040341 214 P 214 (251)
Q Consensus 214 ~ 214 (251)
.
T Consensus 169 T 169 (280)
T cd07945 169 T 169 (280)
T ss_pred C
Confidence 3
No 90
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=84.90 E-value=23 Score=30.34 Aligned_cols=101 Identities=12% Similarity=0.186 Sum_probs=67.6
Q ss_pred CCccChhhHHHHHHHhhhcCC--ceee--cCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeE
Q 040341 82 SQKVSGDGLKNVYRSFISDHP--IVSI--EDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALL 157 (251)
Q Consensus 82 ~~~~s~~elid~~~~l~~~yp--I~~I--EDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~il 157 (251)
+...+..+++++.+.+ .+.+ -+++ +|-....+++.+..+.+.. .+||+..+ +++++..++.+.+.|+--.++
T Consensus 25 ~~~~~~~~~~~~A~~~-~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~v--~iPi~~~~-~i~~~~~v~~~~~~Gad~v~l 100 (217)
T cd00331 25 GLIREDFDPVEIAKAY-EKAGAAAISVLTEPKYFQGSLEDLRAVREAV--SLPVLRKD-FIIDPYQIYEARAAGADAVLL 100 (217)
T ss_pred CcCCCCCCHHHHHHHH-HHcCCCEEEEEeCccccCCCHHHHHHHHHhc--CCCEEECC-eecCHHHHHHHHHcCCCEEEE
Confidence 3345566677766664 4443 2333 4555567888888888877 56666556 789999999999887655554
Q ss_pred eeccccccHHHHHHHHHHHHHcCCcEEEecC
Q 040341 158 LKVNQIGSVTESIEAVKMSKRAGWGVMASHR 188 (251)
Q Consensus 158 IK~nqiGtlte~l~~~~~a~~~g~~~ivs~r 188 (251)
.-..- ...+..+.++.+...|+.+++...
T Consensus 101 ~~~~~--~~~~~~~~~~~~~~~g~~~~v~v~ 129 (217)
T cd00331 101 IVAAL--DDEQLKELYELARELGMEVLVEVH 129 (217)
T ss_pred eeccC--CHHHHHHHHHHHHHcCCeEEEEEC
Confidence 33321 235566777778888998888775
No 91
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=83.73 E-value=30 Score=32.05 Aligned_cols=112 Identities=13% Similarity=0.095 Sum_probs=61.4
Q ss_pred ccChhhHHHHHHHhhhcCC---ceee--cCCCCcccH-HHHHHHHhhhCCceEEEcc---c-------ccccCHHHHHHH
Q 040341 84 KVSGDGLKNVYRSFISDHP---IVSI--EDPFDQDDW-EHHAELTGKIGRHVQIVGD---D-------LLVTNPKRVEKA 147 (251)
Q Consensus 84 ~~s~~elid~~~~l~~~yp---I~~I--EDP~~e~D~-~~~~~l~~~lg~~~~ivgD---d-------l~vtn~~~i~~~ 147 (251)
.+|++|+++..+. +.+++ |.+. ++|..+-|+ ..+-+.-++....+.+++- | +-..+.+.+++.
T Consensus 69 ~ls~eeI~e~~~~-~~~~G~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~~e~l~~L 147 (343)
T TIGR03551 69 LLSLEEIAERAAE-AWKAGATEVCIQGGIHPDLDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRL 147 (343)
T ss_pred cCCHHHHHHHHHH-HHHCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4799999998877 45566 3333 355443332 2222222222234566542 1 112345666655
Q ss_pred HhccCcceeE--------------eeccccccHHHHHHHHHHHHHcCCcE----EEecCCCCCCchhHhhh
Q 040341 148 IKEKTCNALL--------------LKVNQIGSVTESIEAVKMSKRAGWGV----MASHRSGETEDTFIADL 200 (251)
Q Consensus 148 i~~~a~n~il--------------IK~nqiGtlte~l~~~~~a~~~g~~~----ivs~rsgEt~d~~iadL 200 (251)
-+.|.. .++ |.|.++ +..+.+++++.|++.|+.+ |+|+ +||..+++-++
T Consensus 148 keAGl~-~i~~~~~E~~~~~v~~~i~~~~~-~~~~~~~~i~~a~~~Gi~v~s~~i~G~--~Et~ed~~~~l 214 (343)
T TIGR03551 148 KEAGLD-SMPGTAAEILDDEVRKVICPDKL-STAEWIEIIKTAHKLGIPTTATIMYGH--VETPEHWVDHL 214 (343)
T ss_pred HHhCcc-cccCcchhhcCHHHHHhcCCCCC-CHHHHHHHHHHHHHcCCcccceEEEec--CCCHHHHHHHH
Confidence 544433 222 112111 6778899999999999988 6665 57765544443
No 92
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=83.68 E-value=39 Score=31.75 Aligned_cols=143 Identities=13% Similarity=0.172 Sum_probs=91.9
Q ss_pred CCcHHHHHHHHHHHHhcCCccceeeeeehhhhcccccC-------------CcceeecCCCCCCCCCCccChhhHHHHHH
Q 040341 29 QESYEGFELLKTAIAKGGYIGKIVIGMDVAASEFYDSK-------------DKTYDLNFKEENNDGSQKVSGDGLKNVYR 95 (251)
Q Consensus 29 ~~~eeal~~i~~Ai~~aGy~~kI~iglD~Aase~~~~~-------------~g~Y~l~~~~~~~d~~~~~s~~elid~~~ 95 (251)
.+.|.|.++|..|- ++|-.- |++..=.+...+..+. ...|++- + ...++-|+-..++
T Consensus 27 G~le~A~~lIdaAk-~aGADa-vKfQt~~~~d~~t~~~~~~~~~i~~~~~~~slyel~-e-------~~~~p~e~~~~Lk 96 (347)
T COG2089 27 GDLERAKELIDAAK-EAGADA-VKFQTFYTPDIMTLESKNVPFKIKTLWDKVSLYELY-E-------EAETPLEWHAQLK 96 (347)
T ss_pred CcHHHHHHHHHHHH-HcCcce-eeeecccccccccccccCCccccccccccccHHHHH-H-------HhcCCHHHHHHHH
Confidence 46799999999877 588642 3333322222222211 1123321 1 1234455566678
Q ss_pred HhhhcCCceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeeccccccHHHHHHHHHH
Q 040341 96 SFISDHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKM 175 (251)
Q Consensus 96 ~l~~~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqiGtlte~l~~~~~ 175 (251)
+++++-+|+++--||+... ..+-.+++....=++.= -++++..|+.....+. .++|.-+ +-+++|.-++++.
T Consensus 97 e~a~~~Gi~~~SSPfd~~s----vd~l~~~~~~ayKIaS~-E~~~~plik~iA~~~k--PiIlSTG-ma~~~ei~~av~~ 168 (347)
T COG2089 97 EYARKRGIIFFSSPFDLTA----VDLLESLNPPAYKIASG-EINDLPLIKYIAKKGK--PIILSTG-MATIEEIEEAVAI 168 (347)
T ss_pred HHHHHcCeEEEecCCCHHH----HHHHHhcCCCeEEecCc-cccChHHHHHHHhcCC--CEEEEcc-cccHHHHHHHHHH
Confidence 8889999999999999765 44455665555556553 5788899998776654 6666543 4688899999999
Q ss_pred HHHcCCc--EEEecCC
Q 040341 176 SKRAGWG--VMASHRS 189 (251)
Q Consensus 176 a~~~g~~--~ivs~rs 189 (251)
++++|-. +.+.|-|
T Consensus 169 ~r~~g~~~i~LLhC~s 184 (347)
T COG2089 169 LRENGNPDIALLHCTS 184 (347)
T ss_pred HHhcCCCCeEEEEecC
Confidence 9999988 5555544
No 93
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=83.60 E-value=11 Score=37.45 Aligned_cols=130 Identities=15% Similarity=0.129 Sum_probs=78.1
Q ss_pred CCCccChhhHHHHHHHhhhcCCceeecCCC---CcccHHHHHHHHhhhCCceEEEc------ccccccCHHHHHHHHhcc
Q 040341 81 GSQKVSGDGLKNVYRSFISDHPIVSIEDPF---DQDDWEHHAELTGKIGRHVQIVG------DDLLVTNPKRVEKAIKEK 151 (251)
Q Consensus 81 ~~~~~s~~elid~~~~l~~~ypI~~IEDP~---~e~D~~~~~~l~~~lg~~~~ivg------Ddl~vtn~~~i~~~i~~~ 151 (251)
++..+|.+|-+++++. +++.+|-.||=.| .+.|++..+.+.+.--+.+.|++ .|+.+.+...++.+...+
T Consensus 16 ~g~~~s~eeKl~Ia~~-L~~~GVd~IE~G~p~~s~~d~~~v~~i~~~~~~~~~i~~~~r~~r~~~~~~~d~~~ea~~~~~ 94 (526)
T TIGR00977 16 EGVSFSLEDKIRIAER-LDDLGIHYIEGGWPGANPKDVQFFWQLKEMNFKNAKIVAFCSTRRPHKKVEEDKMLQALIKAE 94 (526)
T ss_pred CCCCCCHHHHHHHHHH-HHHcCCCEEEEeCCCCChHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchHHHHHHHhcCC
Confidence 3568999999998887 5999999999744 47888888877642212234433 222233344455555443
Q ss_pred Ccce-eEe---------eccccccHHHHH----HHHHHHHHcCCcEEEecC---C-CCCCchhHhhhhhh---cccCccc
Q 040341 152 TCNA-LLL---------KVNQIGSVTESI----EAVKMSKRAGWGVMASHR---S-GETEDTFIADLSVG---LATGQIK 210 (251)
Q Consensus 152 a~n~-ilI---------K~nqiGtlte~l----~~~~~a~~~g~~~ivs~r---s-gEt~d~~iadLAva---~~~~~ik 210 (251)
.... +.+ |++ .+..|.+ +++++|+++|..+.++.. - ..++-.|+.+++-+ .++..|.
T Consensus 95 ~~~v~i~~~~Sd~h~~~~l~--~s~ee~l~~~~~~v~~ak~~g~~V~~~~e~f~D~~r~~~~~l~~~~~~a~~aGad~i~ 172 (526)
T TIGR00977 95 TPVVTIFGKSWDLHVLEALQ--TTLEENLAMIYDTVAYLKRQGDEVIYDAEHFFDGYKANPEYALATLATAQQAGADWLV 172 (526)
T ss_pred CCEEEEEeCCCHHHHHHHhC--CCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeeecccCCHHHHHHHHHHHHhCCCCeEE
Confidence 3322 222 222 2445554 558899999999876654 2 24666777766544 4555554
Q ss_pred cCC
Q 040341 211 TGA 213 (251)
Q Consensus 211 ~G~ 213 (251)
.-+
T Consensus 173 i~D 175 (526)
T TIGR00977 173 LCD 175 (526)
T ss_pred Eec
Confidence 433
No 94
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=83.40 E-value=8.3 Score=33.60 Aligned_cols=93 Identities=12% Similarity=0.163 Sum_probs=69.7
Q ss_pred cChhhHHHHHHHhhhcCCceeecCCCCcccHHH-HHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeecccc
Q 040341 85 VSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEH-HAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQI 163 (251)
Q Consensus 85 ~s~~elid~~~~l~~~ypI~~IEDP~~e~D~~~-~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqi 163 (251)
.++++.++..+.| -+-+|-.||=+|.-.++.. .+++.++.+ ++ ++|=- +|++++.++++++.|+. +++-|+=
T Consensus 17 ~~~e~a~~~~~al-~~~Gi~~iEit~~t~~a~~~i~~l~~~~~-~~-~vGAG-TVl~~~~a~~a~~aGA~--FivsP~~- 89 (204)
T TIGR01182 17 DDVDDALPLAKAL-IEGGLRVLEVTLRTPVALDAIRLLRKEVP-DA-LIGAG-TVLNPEQLRQAVDAGAQ--FIVSPGL- 89 (204)
T ss_pred CCHHHHHHHHHHH-HHcCCCEEEEeCCCccHHHHHHHHHHHCC-CC-EEEEE-eCCCHHHHHHHHHcCCC--EEECCCC-
Confidence 4678888877775 5668889999998766544 667777764 33 56666 79999999999986654 5577753
Q ss_pred ccHHHHHHHHHHHHHcCCcEEEecCC
Q 040341 164 GSVTESIEAVKMSKRAGWGVMASHRS 189 (251)
Q Consensus 164 Gtlte~l~~~~~a~~~g~~~ivs~rs 189 (251)
.-++++.|+++|+.++-|..+
T Consensus 90 -----~~~v~~~~~~~~i~~iPG~~T 110 (204)
T TIGR01182 90 -----TPELAKHAQDHGIPIIPGVAT 110 (204)
T ss_pred -----CHHHHHHHHHcCCcEECCCCC
Confidence 237888899999999998863
No 95
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=83.28 E-value=20 Score=32.20 Aligned_cols=141 Identities=12% Similarity=0.113 Sum_probs=86.7
Q ss_pred CCccChhhHHHHHHHhhhcCCceeecCCC---CcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEe
Q 040341 82 SQKVSGDGLKNVYRSFISDHPIVSIEDPF---DQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLL 158 (251)
Q Consensus 82 ~~~~s~~elid~~~~l~~~ypI~~IEDP~---~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilI 158 (251)
+..+|.++.++++.. +++-++-.||=.+ .+++++.-..+.+ ++.+..++. ..+-|.++++++.+.+.- .+.|
T Consensus 16 ~~~~s~~~k~~i~~~-L~~~Gv~~IEvG~P~~~~~~~~~~~~l~~-~~~~~~v~~--~~r~~~~di~~a~~~g~~-~i~i 90 (262)
T cd07948 16 NAFFDTEDKIEIAKA-LDAFGVDYIELTSPAASPQSRADCEAIAK-LGLKAKILT--HIRCHMDDARIAVETGVD-GVDL 90 (262)
T ss_pred CCCCCHHHHHHHHHH-HHHcCCCEEEEECCCCCHHHHHHHHHHHh-CCCCCcEEE--EecCCHHHHHHHHHcCcC-EEEE
Confidence 467899999998887 5887888888743 3556666655643 233333332 135689999999887543 4443
Q ss_pred ---------eccccccHHHH----HHHHHHHHHcCCcEEEecC-CCCCCchhHhhhh---hhcccCccccC---CCCchh
Q 040341 159 ---------KVNQIGSVTES----IEAVKMSKRAGWGVMASHR-SGETEDTFIADLS---VGLATGQIKTG---APCRSE 218 (251)
Q Consensus 159 ---------K~nqiGtlte~----l~~~~~a~~~g~~~ivs~r-sgEt~d~~iadLA---va~~~~~ik~G---~~~r~E 218 (251)
+-|+-.+..|+ .+++++|++.|+.+.++.. ...++..++.+++ ...++..+-.. +....+
T Consensus 91 ~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~ 170 (262)
T cd07948 91 VFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYRAVDKLGVNRVGIADTVGIATPR 170 (262)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEECCcCCCCCHH
Confidence 22344566664 4555899999999987763 2334456665544 55566665433 334455
Q ss_pred HHHHhhHHH
Q 040341 219 RLAKYNQLL 227 (251)
Q Consensus 219 r~aKyN~ll 227 (251)
++..+=+.+
T Consensus 171 ~v~~~~~~~ 179 (262)
T cd07948 171 QVYELVRTL 179 (262)
T ss_pred HHHHHHHHH
Confidence 554444443
No 96
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=82.64 E-value=33 Score=31.98 Aligned_cols=146 Identities=10% Similarity=0.045 Sum_probs=89.3
Q ss_pred CCccChhhHHHHHHHhhhcCCceeecC--------------CCCcccHHHHHHHHhhhCC-ceEEEcccccccCHHHHHH
Q 040341 82 SQKVSGDGLKNVYRSFISDHPIVSIED--------------PFDQDDWEHHAELTGKIGR-HVQIVGDDLLVTNPKRVEK 146 (251)
Q Consensus 82 ~~~~s~~elid~~~~l~~~ypI~~IED--------------P~~e~D~~~~~~l~~~lg~-~~~ivgDdl~vtn~~~i~~ 146 (251)
+..++.++.++++.. +++-+|-.||= |-...||+....+.+...+ ++....+- -..+.++++.
T Consensus 19 ~~~f~~~~~~~i~~~-L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~~~~~~~~ll~p-g~~~~~dl~~ 96 (337)
T PRK08195 19 RHQYTLEQVRAIARA-LDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVVKQAKIAALLLP-GIGTVDDLKM 96 (337)
T ss_pred CCccCHHHHHHHHHH-HHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhCCCCEEEEEecc-CcccHHHHHH
Confidence 357899999998887 58878777775 3345678877777655532 33332331 2346889999
Q ss_pred HHhccCcceeEeeccccccHHHHHHHHHHHHHcCCcEEEec-CCCCCCchhHhhhh---hhcccCccccCCC---CchhH
Q 040341 147 AIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAGWGVMASH-RSGETEDTFIADLS---VGLATGQIKTGAP---CRSER 219 (251)
Q Consensus 147 ~i~~~a~n~ilIK~nqiGtlte~l~~~~~a~~~g~~~ivs~-rsgEt~d~~iadLA---va~~~~~ik~G~~---~r~Er 219 (251)
+.+.+. +.+-|-. ...-...+.+.++.|++.|+.+.+.- .++.+++.++++++ ...++..|-.-+. ...+.
T Consensus 97 a~~~gv-d~iri~~-~~~e~~~~~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~ 174 (337)
T PRK08195 97 AYDAGV-RVVRVAT-HCTEADVSEQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCVYVVDSAGALLPED 174 (337)
T ss_pred HHHcCC-CEEEEEE-ecchHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEEEeCCCCCCCCHHH
Confidence 887654 3333221 22234567889999999999986644 34456666666544 5566666654333 34455
Q ss_pred HHHhhHHHHHHHHh
Q 040341 220 LAKYNQLLRIEEEL 233 (251)
Q Consensus 220 ~aKyN~llrie~~l 233 (251)
+.++=+.++ +++
T Consensus 175 v~~~v~~l~--~~l 186 (337)
T PRK08195 175 VRDRVRALR--AAL 186 (337)
T ss_pred HHHHHHHHH--Hhc
Confidence 544444443 455
No 97
>PRK07094 biotin synthase; Provisional
Probab=82.59 E-value=25 Score=31.99 Aligned_cols=112 Identities=20% Similarity=0.227 Sum_probs=67.4
Q ss_pred cChhhHHHHHHHhhhcCC--ceee---cCCCCcccHHHHHHHHhhhCC--ceEEEcccccccCHHHHHHHHhccCcceeE
Q 040341 85 VSGDGLKNVYRSFISDHP--IVSI---EDPFDQDDWEHHAELTGKIGR--HVQIVGDDLLVTNPKRVEKAIKEKTCNALL 157 (251)
Q Consensus 85 ~s~~elid~~~~l~~~yp--I~~I---EDP~~e~D~~~~~~l~~~lg~--~~~ivgDdl~vtn~~~i~~~i~~~a~n~il 157 (251)
++++++++....+ .+++ -+.| ++|+. +.+.+.++.+.+.. .+.+... ....+.+.++...+.| ++.++
T Consensus 70 ls~eei~~~~~~~-~~~g~~~i~l~gG~~~~~--~~~~l~~l~~~i~~~~~l~i~~~-~g~~~~e~l~~Lk~aG-~~~v~ 144 (323)
T PRK07094 70 LSPEEILECAKKA-YELGYRTIVLQSGEDPYY--TDEKIADIIKEIKKELDVAITLS-LGERSYEEYKAWKEAG-ADRYL 144 (323)
T ss_pred CCHHHHHHHHHHH-HHCCCCEEEEecCCCCCC--CHHHHHHHHHHHHccCCceEEEe-cCCCCHHHHHHHHHcC-CCEEE
Confidence 4889988887764 4444 3333 46754 23445555544422 2333321 1223567776655543 45554
Q ss_pred eec-----------cccccHHHHHHHHHHHHHcCCcE----EEecCCCCCCchhHhhhhh
Q 040341 158 LKV-----------NQIGSVTESIEAVKMSKRAGWGV----MASHRSGETEDTFIADLSV 202 (251)
Q Consensus 158 IK~-----------nqiGtlte~l~~~~~a~~~g~~~----ivs~rsgEt~d~~iadLAv 202 (251)
+.+ +.-.+..+.+++++.++++|+.+ |+|. .|||.+++..++..
T Consensus 145 ~glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~iiGl-pget~ed~~~~l~~ 203 (323)
T PRK07094 145 LRHETADKELYAKLHPGMSFENRIACLKDLKELGYEVGSGFMVGL-PGQTLEDLADDILF 203 (323)
T ss_pred eccccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeecceEEEEC-CCCCHHHHHHHHHH
Confidence 422 34478999999999999999865 5555 38888877665544
No 98
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=82.37 E-value=7 Score=34.20 Aligned_cols=111 Identities=11% Similarity=0.120 Sum_probs=76.8
Q ss_pred ccChhhHHHHHHHhhhcCCceeecCCCCcccHH-HHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeeccc
Q 040341 84 KVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWE-HHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQ 162 (251)
Q Consensus 84 ~~s~~elid~~~~l~~~ypI~~IEDP~~e~D~~-~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nq 162 (251)
..++++.++..+. +-+.+|-.||=+|.-.++. ..++|.++.+ ++ ++|=+ +|++++.++++++.|+. +++-|+=
T Consensus 23 ~~~~~~a~~i~~a-l~~~Gi~~iEitl~~~~~~~~I~~l~~~~p-~~-~IGAG-TVl~~~~a~~a~~aGA~--FivsP~~ 96 (212)
T PRK05718 23 INKLEDAVPLAKA-LVAGGLPVLEVTLRTPAALEAIRLIAKEVP-EA-LIGAG-TVLNPEQLAQAIEAGAQ--FIVSPGL 96 (212)
T ss_pred cCCHHHHHHHHHH-HHHcCCCEEEEecCCccHHHHHHHHHHHCC-CC-EEEEe-eccCHHHHHHHHHcCCC--EEECCCC
Confidence 3577888887777 4777888899888876654 4667777775 44 56666 79999999999987654 4555542
Q ss_pred cccHHHHHHHHHHHHHcCCcEEEecCCCCCCchhHhhhhhhcccCcccc
Q 040341 163 IGSVTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLATGQIKT 211 (251)
Q Consensus 163 iGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d~~iadLAva~~~~~ik~ 211 (251)
++ ++++.|+++++.++-|..+..- +--|...|+..+|.
T Consensus 97 ----~~--~vi~~a~~~~i~~iPG~~TptE-----i~~a~~~Ga~~vKl 134 (212)
T PRK05718 97 ----TP--PLLKAAQEGPIPLIPGVSTPSE-----LMLGMELGLRTFKF 134 (212)
T ss_pred ----CH--HHHHHHHHcCCCEeCCCCCHHH-----HHHHHHCCCCEEEE
Confidence 22 6677788888888877763211 33366667777776
No 99
>PRK08508 biotin synthase; Provisional
Probab=81.77 E-value=25 Score=31.73 Aligned_cols=112 Identities=13% Similarity=0.131 Sum_probs=66.5
Q ss_pred ccChhhHHHHHHHhhhcCCc---eee--cCCCCcccHHHHHHHHhhhC---CceEEEcccccccCHHHHHHHHhccCcce
Q 040341 84 KVSGDGLKNVYRSFISDHPI---VSI--EDPFDQDDWEHHAELTGKIG---RHVQIVGDDLLVTNPKRVEKAIKEKTCNA 155 (251)
Q Consensus 84 ~~s~~elid~~~~l~~~ypI---~~I--EDP~~e~D~~~~~~l~~~lg---~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ 155 (251)
.+|++|+++..++. .++++ +++ ...+.+.+++-..++.+.+. ..+.++.-. -..+.+.+++..+.| ++.
T Consensus 39 ~~s~eeI~~~a~~a-~~~g~~~~~lv~sg~~~~~~~~e~~~ei~~~ik~~~p~l~i~~s~-G~~~~e~l~~Lk~aG-ld~ 115 (279)
T PRK08508 39 RKDIEQIVQEAKMA-KANGALGFCLVTSGRGLDDKKLEYVAEAAKAVKKEVPGLHLIACN-GTASVEQLKELKKAG-IFS 115 (279)
T ss_pred CCCHHHHHHHHHHH-HHCCCCEEEEEeccCCCCcccHHHHHHHHHHHHhhCCCcEEEecC-CCCCHHHHHHHHHcC-CCE
Confidence 36889998877763 44453 222 11234456665665555442 235554332 234667666654433 334
Q ss_pred eEe----------eccccccHHHHHHHHHHHHHcCCcE----EEecCCCCCCchhHhhh
Q 040341 156 LLL----------KVNQIGSVTESIEAVKMSKRAGWGV----MASHRSGETEDTFIADL 200 (251)
Q Consensus 156 ilI----------K~nqiGtlte~l~~~~~a~~~g~~~----ivs~rsgEt~d~~iadL 200 (251)
+++ +.....++.+.++.++.|++.|+.+ |+|+ |||....+-++
T Consensus 116 ~~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~Gl--GEt~ed~~~~l 172 (279)
T PRK08508 116 YNHNLETSKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIFGL--GESWEDRISFL 172 (279)
T ss_pred EcccccchHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecceeEEec--CCCHHHHHHHH
Confidence 442 1222467899999999999999988 8886 89876555444
No 100
>PRK12928 lipoyl synthase; Provisional
Probab=81.73 E-value=17 Score=33.17 Aligned_cols=155 Identities=19% Similarity=0.253 Sum_probs=90.8
Q ss_pred CccChhhHHHHHHHhhhcCCc-----eee-cCCCCcccHHHHHHHHhhhCC-----ceEEEccccccc-CHHHHHHHHhc
Q 040341 83 QKVSGDGLKNVYRSFISDHPI-----VSI-EDPFDQDDWEHHAELTGKIGR-----HVQIVGDDLLVT-NPKRVEKAIKE 150 (251)
Q Consensus 83 ~~~s~~elid~~~~l~~~ypI-----~~I-EDP~~e~D~~~~~~l~~~lg~-----~~~ivgDdl~vt-n~~~i~~~i~~ 150 (251)
..++++|..+....+ .+.++ .+. .|.+...+.+.|.++.+.+.. ++.++--| +.. ..+.+++..+.
T Consensus 85 ~~~~~eei~~~a~~~-~~~G~keivitg~~~dDl~d~g~~~~~ell~~Ik~~~p~~~I~~ltp~-~~~~~~e~L~~l~~A 162 (290)
T PRK12928 85 MPLDPDEPERVAEAV-AALGLRYVVLTSVARDDLPDGGAAHFVATIAAIRARNPGTGIEVLTPD-FWGGQRERLATVLAA 162 (290)
T ss_pred CCCCHHHHHHHHHHH-HHCCCCEEEEEEEeCCcccccCHHHHHHHHHHHHhcCCCCEEEEeccc-cccCCHHHHHHHHHc
Confidence 357889988777764 44342 222 344333334566766655521 33333223 222 34556655543
Q ss_pred cC--c-------ceeEeeccccccHHHHHHHHHHHHHcC--CcE----EEecCCCCCCchhHhhhhh--hcccCccccCC
Q 040341 151 KT--C-------NALLLKVNQIGSVTESIEAVKMSKRAG--WGV----MASHRSGETEDTFIADLSV--GLATGQIKTGA 213 (251)
Q Consensus 151 ~a--~-------n~ilIK~nqiGtlte~l~~~~~a~~~g--~~~----ivs~rsgEt~d~~iadLAv--a~~~~~ik~G~ 213 (251)
+. + ..++=++++-.+..+.+++++.|++.| +.+ |+|+ |||++++..+|.. .++..++.+|-
T Consensus 163 g~~i~~hnlEt~~~vl~~m~r~~t~e~~le~l~~ak~~gp~i~~~s~iIvG~--GET~ed~~etl~~Lrel~~d~v~i~~ 240 (290)
T PRK12928 163 KPDVFNHNLETVPRLQKAVRRGADYQRSLDLLARAKELAPDIPTKSGLMLGL--GETEDEVIETLRDLRAVGCDRLTIGQ 240 (290)
T ss_pred CchhhcccCcCcHHHHHHhCCCCCHHHHHHHHHHHHHhCCCceecccEEEeC--CCCHHHHHHHHHHHHhcCCCEEEEEc
Confidence 31 1 222223455589999999999999999 654 8887 9999988877655 45556666665
Q ss_pred CCchhH----------HHHhhHHHHHHHHhCCCccccC
Q 040341 214 PCRSER----------LAKYNQLLRIEEELGPAAIYAG 241 (251)
Q Consensus 214 ~~r~Er----------~aKyN~llrie~~l~~~~~~~~ 241 (251)
-.+..+ =..+-++-++..++|=..+..|
T Consensus 241 Yl~p~~~~~~v~~~~~~~~f~~~~~~~~~~g~~~~~~~ 278 (290)
T PRK12928 241 YLRPSLAHLPVQRYWTPEEFEALGQIARELGFSHVRSG 278 (290)
T ss_pred CCCCCccCCceeeccCHHHHHHHHHHHHHcCCceeEec
Confidence 444211 2344556667777875555555
No 101
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=81.60 E-value=9.6 Score=33.63 Aligned_cols=95 Identities=15% Similarity=0.034 Sum_probs=67.4
Q ss_pred cChhhHHHHHHHhhhcCCceeecCCCCc-ccHHHHHHHHhhhCCc--eEEEcccccccCHHHHHHHHhccCcceeEeecc
Q 040341 85 VSGDGLKNVYRSFISDHPIVSIEDPFDQ-DDWEHHAELTGKIGRH--VQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVN 161 (251)
Q Consensus 85 ~s~~elid~~~~l~~~ypI~~IEDP~~e-~D~~~~~~l~~~lg~~--~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~n 161 (251)
.++++.++..+.| -+-+|-.||=+|.- +-.+.|..|.++++.+ -.++|=- +|.|++.++.+++.|+- +++-|+
T Consensus 24 ~~~~~a~~~~~al-~~gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaG-TVl~~e~a~~a~~aGA~--FiVsP~ 99 (222)
T PRK07114 24 ADVEVAKKVIKAC-YDGGARVFEFTNRGDFAHEVFAELVKYAAKELPGMILGVG-SIVDAATAALYIQLGAN--FIVTPL 99 (222)
T ss_pred CCHHHHHHHHHHH-HHCCCCEEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeE-eCcCHHHHHHHHHcCCC--EEECCC
Confidence 4677888877765 55588899999975 4456688887555322 1367776 89999999999987654 666665
Q ss_pred ccccHHHHHHHHHHHHHcCCcEEEecCC
Q 040341 162 QIGSVTESIEAVKMSKRAGWGVMASHRS 189 (251)
Q Consensus 162 qiGtlte~l~~~~~a~~~g~~~ivs~rs 189 (251)
= .-++++.|+++|+.++-|..+
T Consensus 100 ~------~~~v~~~~~~~~i~~iPG~~T 121 (222)
T PRK07114 100 F------NPDIAKVCNRRKVPYSPGCGS 121 (222)
T ss_pred C------CHHHHHHHHHcCCCEeCCCCC
Confidence 3 235677788888888877763
No 102
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=81.47 E-value=9.1 Score=33.14 Aligned_cols=93 Identities=14% Similarity=0.159 Sum_probs=64.2
Q ss_pred ccChhhHHHHHHHhhhcCCceeecCCCCcccHHHH-HHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeeccc
Q 040341 84 KVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHH-AELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQ 162 (251)
Q Consensus 84 ~~s~~elid~~~~l~~~ypI~~IEDP~~e~D~~~~-~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nq 162 (251)
..+.++..+..+.|++ -+|-.||=+|.-.++... +.+.++.. .+ ++|=- +|+|++.++++++.|+. +++-|+=
T Consensus 16 ~~~~~~a~~~~~al~~-gGi~~iEiT~~t~~a~~~I~~l~~~~p-~~-~vGAG-TV~~~e~a~~a~~aGA~--FivSP~~ 89 (196)
T PF01081_consen 16 GDDPEDAVPIAEALIE-GGIRAIEITLRTPNALEAIEALRKEFP-DL-LVGAG-TVLTAEQAEAAIAAGAQ--FIVSPGF 89 (196)
T ss_dssp TSSGGGHHHHHHHHHH-TT--EEEEETTSTTHHHHHHHHHHHHT-TS-EEEEE-S--SHHHHHHHHHHT-S--EEEESS-
T ss_pred cCCHHHHHHHHHHHHH-CCCCEEEEecCCccHHHHHHHHHHHCC-CC-eeEEE-eccCHHHHHHHHHcCCC--EEECCCC
Confidence 3467788887777644 478889988887775544 44777774 33 67776 79999999999987654 6677752
Q ss_pred cccHHHHHHHHHHHHHcCCcEEEecC
Q 040341 163 IGSVTESIEAVKMSKRAGWGVMASHR 188 (251)
Q Consensus 163 iGtlte~l~~~~~a~~~g~~~ivs~r 188 (251)
.-++++.|+++|+.++-|..
T Consensus 90 ------~~~v~~~~~~~~i~~iPG~~ 109 (196)
T PF01081_consen 90 ------DPEVIEYAREYGIPYIPGVM 109 (196)
T ss_dssp -------HHHHHHHHHHTSEEEEEES
T ss_pred ------CHHHHHHHHHcCCcccCCcC
Confidence 33788889999999998886
No 103
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=81.08 E-value=13 Score=32.33 Aligned_cols=112 Identities=18% Similarity=0.222 Sum_probs=77.5
Q ss_pred ccChhhHHHHHHHhhhcCCceeecCCCCcccHH-HHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeeccc
Q 040341 84 KVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWE-HHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQ 162 (251)
Q Consensus 84 ~~s~~elid~~~~l~~~ypI~~IEDP~~e~D~~-~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nq 162 (251)
..+.++..+....+ -+-+|-.||=.+...++. ..+.|+++.+.++ ++|=- +|+++++++.+++.++- .++-|+.
T Consensus 18 ~~~~~~~~~~~~a~-~~gGi~~iEvt~~~~~~~~~i~~l~~~~~~~~-~iGaG-TV~~~~~~~~a~~aGA~--fivsp~~ 92 (206)
T PRK09140 18 GITPDEALAHVGAL-IEAGFRAIEIPLNSPDPFDSIAALVKALGDRA-LIGAG-TVLSPEQVDRLADAGGR--LIVTPNT 92 (206)
T ss_pred CCCHHHHHHHHHHH-HHCCCCEEEEeCCCccHHHHHHHHHHHcCCCc-EEeEE-ecCCHHHHHHHHHcCCC--EEECCCC
Confidence 34778888877774 566888888777766654 5777777775433 56666 78999999999988763 3333433
Q ss_pred cccHHHHHHHHHHHHHcCCcEEEecCCCCCCchhHhhhhhhcccCcccc
Q 040341 163 IGSVTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLATGQIKT 211 (251)
Q Consensus 163 iGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d~~iadLAva~~~~~ik~ 211 (251)
-.++++.++..|..+++|+.+.+- +--|...++.++|.
T Consensus 93 ------~~~v~~~~~~~~~~~~~G~~t~~E-----~~~A~~~Gad~vk~ 130 (206)
T PRK09140 93 ------DPEVIRRAVALGMVVMPGVATPTE-----AFAALRAGAQALKL 130 (206)
T ss_pred ------CHHHHHHHHHCCCcEEcccCCHHH-----HHHHHHcCCCEEEE
Confidence 236677788899999999764422 45566677777775
No 104
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=80.55 E-value=12 Score=32.54 Aligned_cols=93 Identities=13% Similarity=0.159 Sum_probs=68.6
Q ss_pred cChhhHHHHHHHhhhcCCceeecCCCCcccHHH-HHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeecccc
Q 040341 85 VSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEH-HAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQI 163 (251)
Q Consensus 85 ~s~~elid~~~~l~~~ypI~~IEDP~~e~D~~~-~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqi 163 (251)
.++++..+..+.| -+-+|-.||=+|.-.++.. .+++.++.+ + -++|=- +|+|++.++++++.|+- +++-|+=
T Consensus 13 ~~~~~a~~ia~al-~~gGi~~iEit~~tp~a~~~I~~l~~~~~-~-~~vGAG-TVl~~e~a~~ai~aGA~--FivSP~~- 85 (201)
T PRK06015 13 DDVEHAVPLARAL-AAGGLPAIEITLRTPAALDAIRAVAAEVE-E-AIVGAG-TILNAKQFEDAAKAGSR--FIVSPGT- 85 (201)
T ss_pred CCHHHHHHHHHHH-HHCCCCEEEEeCCCccHHHHHHHHHHHCC-C-CEEeeE-eCcCHHHHHHHHHcCCC--EEECCCC-
Confidence 4677877877775 5558889999998666544 666676763 3 467777 89999999999987654 6677752
Q ss_pred ccHHHHHHHHHHHHHcCCcEEEecCC
Q 040341 164 GSVTESIEAVKMSKRAGWGVMASHRS 189 (251)
Q Consensus 164 Gtlte~l~~~~~a~~~g~~~ivs~rs 189 (251)
.-++++.|+++|+.++-|..+
T Consensus 86 -----~~~vi~~a~~~~i~~iPG~~T 106 (201)
T PRK06015 86 -----TQELLAAANDSDVPLLPGAAT 106 (201)
T ss_pred -----CHHHHHHHHHcCCCEeCCCCC
Confidence 236777888999988888863
No 105
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=80.46 E-value=16 Score=32.83 Aligned_cols=102 Identities=16% Similarity=0.244 Sum_probs=67.7
Q ss_pred ccChhhHHHHHHHhhhcCCc-eeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeeccc
Q 040341 84 KVSGDGLKNVYRSFISDHPI-VSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQ 162 (251)
Q Consensus 84 ~~s~~elid~~~~l~~~ypI-~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nq 162 (251)
.+++.++...|.+. ----| |.-|.+|....++......+.+ ++||.-.| |+.++..|..+-..| +++|||=..-
T Consensus 67 ~~d~~~~a~~y~~~-GA~aiSVlTe~~~F~Gs~~dL~~v~~~~--~~PvL~KD-FIid~~QI~eA~~~G-ADaVLLI~~~ 141 (254)
T PF00218_consen 67 DFDPAEIAKAYEEA-GAAAISVLTEPKFFGGSLEDLRAVRKAV--DLPVLRKD-FIIDPYQIYEARAAG-ADAVLLIAAI 141 (254)
T ss_dssp S-SHHHHHHHHHHT-T-SEEEEE--SCCCHHHHHHHHHHHHHS--SS-EEEES----SHHHHHHHHHTT--SEEEEEGGG
T ss_pred cCCHHHHHHHHHhc-CCCEEEEECCCCCCCCCHHHHHHHHHHh--CCCccccc-CCCCHHHHHHHHHcC-CCEeehhHHh
Confidence 45677777777653 11113 2337778889999999999888 78999999 899999999987775 5666664444
Q ss_pred cccHHHHHHHHHHHHHcCCcEEEecCCCC
Q 040341 163 IGSVTESIEAVKMSKRAGWGVMASHRSGE 191 (251)
Q Consensus 163 iGtlte~l~~~~~a~~~g~~~ivs~rsgE 191 (251)
. +-...-+.+++|++.|+.++|--++.+
T Consensus 142 L-~~~~l~~l~~~a~~lGle~lVEVh~~~ 169 (254)
T PF00218_consen 142 L-SDDQLEELLELAHSLGLEALVEVHNEE 169 (254)
T ss_dssp S-GHHHHHHHHHHHHHTT-EEEEEESSHH
T ss_pred C-CHHHHHHHHHHHHHcCCCeEEEECCHH
Confidence 3 334456889999999999999887544
No 106
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=79.97 E-value=13 Score=33.37 Aligned_cols=96 Identities=17% Similarity=0.259 Sum_probs=69.8
Q ss_pred cCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeeccccccHHHHHHHHHHHHHcCCcEEEe
Q 040341 107 EDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAGWGVMAS 186 (251)
Q Consensus 107 EDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqiGtlte~l~~~~~a~~~g~~~ivs 186 (251)
|.-+...+++.....++.+ ++||+..| |++.+..+..+...|+ ++++|=..-. +..+.-+.++.|++.|..++|-
T Consensus 92 e~~~f~g~~~~l~~v~~~v--~iPvl~kd-fi~~~~qi~~a~~~GA-D~VlLi~~~l-~~~~l~~li~~a~~lGl~~lve 166 (260)
T PRK00278 92 DERFFQGSLEYLRAARAAV--SLPVLRKD-FIIDPYQIYEARAAGA-DAILLIVAAL-DDEQLKELLDYAHSLGLDVLVE 166 (260)
T ss_pred ccccCCCCHHHHHHHHHhc--CCCEEeee-ecCCHHHHHHHHHcCC-CEEEEEeccC-CHHHHHHHHHHHHHcCCeEEEE
Confidence 6666778899999999888 78999999 8999999998887754 5555543322 3356667888899999999988
Q ss_pred cCCCCCCchhHhhhhhhcccCccccC
Q 040341 187 HRSGETEDTFIADLSVGLATGQIKTG 212 (251)
Q Consensus 187 ~rsgEt~d~~iadLAva~~~~~ik~G 212 (251)
..+.+. +.-|..+++.+|-.+
T Consensus 167 vh~~~E-----~~~A~~~gadiIgin 187 (260)
T PRK00278 167 VHDEEE-----LERALKLGAPLIGIN 187 (260)
T ss_pred eCCHHH-----HHHHHHcCCCEEEEC
Confidence 765542 344556666666554
No 107
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=79.79 E-value=23 Score=30.78 Aligned_cols=117 Identities=15% Similarity=0.088 Sum_probs=83.0
Q ss_pred cChhhHHHHHHHhhhcCCceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeeccc--
Q 040341 85 VSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQ-- 162 (251)
Q Consensus 85 ~s~~elid~~~~l~~~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nq-- 162 (251)
.+.++|++.-+.|.+-+|.++|+=|...+=++.-+.|.+. | +++..= .|.+++....+++.|+. .+-.=+||
T Consensus 61 ~~~e~~i~~a~~l~~~~~~~~iKIP~T~~gl~ai~~L~~~-g--i~v~~T--~V~s~~Qa~~Aa~AGA~-yvsP~vgR~~ 134 (211)
T cd00956 61 TDAEGMVAEARKLASLGGNVVVKIPVTEDGLKAIKKLSEE-G--IKTNVT--AIFSAAQALLAAKAGAT-YVSPFVGRID 134 (211)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEEcCcHhHHHHHHHHHHc-C--CceeeE--EecCHHHHHHHHHcCCC-EEEEecChHh
Confidence 5788999999998777899999999998666666666655 3 443322 47799999999888753 35555566
Q ss_pred ---cccHHHHHHHHHHHHHcCCc---EEEecCCCCCCchhHhhhhhhcccCccccC
Q 040341 163 ---IGSVTESIEAVKMSKRAGWG---VMASHRSGETEDTFIADLSVGLATGQIKTG 212 (251)
Q Consensus 163 ---iGtlte~l~~~~~a~~~g~~---~ivs~rsgEt~d~~iadLAva~~~~~ik~G 212 (251)
.-++.-..++.++++.+|+. .+-|.| +... ..-|...|+..++.+
T Consensus 135 ~~g~dg~~~i~~i~~~~~~~~~~tkil~As~r---~~~e--i~~a~~~Gad~vTv~ 185 (211)
T cd00956 135 DLGGDGMELIREIRTIFDNYGFDTKILAASIR---NPQH--VIEAALAGADAITLP 185 (211)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCCceEEecccC---CHHH--HHHHHHcCCCEEEeC
Confidence 35677777889999999988 444545 3222 222666788888875
No 108
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=79.60 E-value=18 Score=35.61 Aligned_cols=122 Identities=11% Similarity=0.091 Sum_probs=74.8
Q ss_pred cChhhHHHHHHHhhhcCCceeec-CC---CCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEee-
Q 040341 85 VSGDGLKNVYRSFISDHPIVSIE-DP---FDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK- 159 (251)
Q Consensus 85 ~s~~elid~~~~l~~~ypI~~IE-DP---~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK- 159 (251)
.++++ .+....|++. ++-.|+ |+ -...-|+..+++.+... .++|+.- .|.+++.++.+++.|+- +|.+=
T Consensus 238 ~~~~~-~~~~~~l~~a-g~d~i~id~a~G~s~~~~~~i~~ik~~~~-~~~v~aG--~V~t~~~a~~~~~aGad-~I~vg~ 311 (495)
T PTZ00314 238 TRPED-IERAAALIEA-GVDVLVVDSSQGNSIYQIDMIKKLKSNYP-HVDIIAG--NVVTADQAKNLIDAGAD-GLRIGM 311 (495)
T ss_pred CCHHH-HHHHHHHHHC-CCCEEEEecCCCCchHHHHHHHHHHhhCC-CceEEEC--CcCCHHHHHHHHHcCCC-EEEECC
Confidence 34555 5777776654 543333 55 23333566777777764 4666654 36789999998887644 43321
Q ss_pred -cc-----c------cccHHHHHHHHHHHHHcCCcEEEecCCCCCCchhHhhhhhhcccCccccCCCC
Q 040341 160 -VN-----Q------IGSVTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPC 215 (251)
Q Consensus 160 -~n-----q------iGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d~~iadLAva~~~~~ik~G~~~ 215 (251)
|+ | +.+++...++.+.|++.|+++|....-... .=+=-|+++|+..+..|...
T Consensus 312 g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadGGi~~~---~di~kAla~GA~~Vm~G~~~ 376 (495)
T PTZ00314 312 GSGSICITQEVCAVGRPQASAVYHVARYARERGVPCIADGGIKNS---GDICKALALGADCVMLGSLL 376 (495)
T ss_pred cCCcccccchhccCCCChHHHHHHHHHHHhhcCCeEEecCCCCCH---HHHHHHHHcCCCEEEECchh
Confidence 22 1 235566778888999999998884432222 11344666788888888764
No 109
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=78.56 E-value=41 Score=31.70 Aligned_cols=141 Identities=17% Similarity=0.118 Sum_probs=85.4
Q ss_pred CCCccChhhHHHHHHHhhhcCCceeecCCCC---------cccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhcc
Q 040341 81 GSQKVSGDGLKNVYRSFISDHPIVSIEDPFD---------QDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEK 151 (251)
Q Consensus 81 ~~~~~s~~elid~~~~l~~~ypI~~IEDP~~---------e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~ 151 (251)
++..++.++=++++.. +++.+|-.||=.+. .|+-+..+.+.+..+ +.+. ..+.|.++++++++.+
T Consensus 61 ~g~~~s~e~Ki~ia~~-L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i~~~~~--~~~~---~l~~n~~die~A~~~g 134 (347)
T PLN02746 61 EKNIVPTSVKVELIQR-LVSSGLPVVEATSFVSPKWVPQLADAKDVMAAVRNLEG--ARFP---VLTPNLKGFEAAIAAG 134 (347)
T ss_pred CCCCCCHHHHHHHHHH-HHHcCCCEEEECCCcCcccccccccHHHHHHHHHhccC--Ccee---EEcCCHHHHHHHHHcC
Confidence 3567999998898887 58889999996531 144455555544222 2222 1356999999999876
Q ss_pred CcceeEe--------eccccccHHHHH----HHHHHHHHcCCcEE--EecC-----CCCCCchhHhh---hhhhcccCcc
Q 040341 152 TCNALLL--------KVNQIGSVTESI----EAVKMSKRAGWGVM--ASHR-----SGETEDTFIAD---LSVGLATGQI 209 (251)
Q Consensus 152 a~n~ilI--------K~nqiGtlte~l----~~~~~a~~~g~~~i--vs~r-----sgEt~d~~iad---LAva~~~~~i 209 (251)
.-...+. |-|.--|..|++ +++++|+++|..+. +|.. .+.++..++.+ -++..++..|
T Consensus 135 ~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r~~~~~l~~~~~~~~~~Gad~I 214 (347)
T PLN02746 135 AKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGPVPPSKVAYVAKELYDMGCYEI 214 (347)
T ss_pred cCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCCCCHHHHHHHHHHHHHcCCCEE
Confidence 5432221 112335777777 58889999999884 3321 23344455544 4566677777
Q ss_pred ccCCCCc---hhHHHHhhHHH
Q 040341 210 KTGAPCR---SERLAKYNQLL 227 (251)
Q Consensus 210 k~G~~~r---~Er~aKyN~ll 227 (251)
...+..+ .+++..+=+-|
T Consensus 215 ~l~DT~G~a~P~~v~~lv~~l 235 (347)
T PLN02746 215 SLGDTIGVGTPGTVVPMLEAV 235 (347)
T ss_pred EecCCcCCcCHHHHHHHHHHH
Confidence 6555443 44444444433
No 110
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=78.07 E-value=34 Score=33.66 Aligned_cols=131 Identities=15% Similarity=0.173 Sum_probs=83.8
Q ss_pred CCccChhhHHHHHHHhhhcCCceeecCCCC---cccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccC---cce
Q 040341 82 SQKVSGDGLKNVYRSFISDHPIVSIEDPFD---QDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKT---CNA 155 (251)
Q Consensus 82 ~~~~s~~elid~~~~l~~~ypI~~IEDP~~---e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a---~n~ 155 (251)
+..+|.+|-+.++.. +++.++-.||=.|. +.|++..+.+.+... ...|++ +.-++.++++++++... ...
T Consensus 17 g~~~s~e~K~~ia~~-L~~~GV~~IEvG~p~~s~~d~e~v~~i~~~~~-~~~i~a--l~r~~~~did~a~~al~~~~~~~ 92 (494)
T TIGR00973 17 GASLTVEEKLQIALA-LERLGVDIIEAGFPVSSPGDFEAVQRIARTVK-NPRVCG--LARCVEKDIDAAAEALKPAEKFR 92 (494)
T ss_pred CCCcCHHHHHHHHHH-HHHcCCCEEEEECCCCCHHHHHHHHHHHHhCC-CCEEEE--EcCCCHHhHHHHHHhccccCCCE
Confidence 457999999998887 59999999996553 678888888865543 233432 12247888888776421 122
Q ss_pred eE--eec-----------cccccHHHHHHHHHHHHHcCCcEEEecCC-CCCCchhHhhhh---hhcccCccccCCCCc
Q 040341 156 LL--LKV-----------NQIGSVTESIEAVKMSKRAGWGVMASHRS-GETEDTFIADLS---VGLATGQIKTGAPCR 216 (251)
Q Consensus 156 il--IK~-----------nqiGtlte~l~~~~~a~~~g~~~ivs~rs-gEt~d~~iadLA---va~~~~~ik~G~~~r 216 (251)
+. ++. ++-.-+..+.+++++|++.|..+.+|... +.|+..|+..++ ...++..|..-+..+
T Consensus 93 v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~~Ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~DTvG 170 (494)
T TIGR00973 93 IHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDDVEFSCEDAGRTEIPFLARIVEAAINAGATTINIPDTVG 170 (494)
T ss_pred EEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCC
Confidence 22 221 11122445557899999999999999864 346667776654 444666665544433
No 111
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=77.68 E-value=24 Score=34.03 Aligned_cols=134 Identities=16% Similarity=0.199 Sum_probs=81.8
Q ss_pred CCCccChhhHHHHHHHhhhcCCceeecCCCC---cccHHHHHHHHhhhCC--ceEEEcccccccCHHHHHHHHhccCcce
Q 040341 81 GSQKVSGDGLKNVYRSFISDHPIVSIEDPFD---QDDWEHHAELTGKIGR--HVQIVGDDLLVTNPKRVEKAIKEKTCNA 155 (251)
Q Consensus 81 ~~~~~s~~elid~~~~l~~~ypI~~IEDP~~---e~D~~~~~~l~~~lg~--~~~ivgDdl~vtn~~~i~~~i~~~a~n~ 155 (251)
++..+|.+|=++..+. +++.++-+||=.|. +.|++..+.+....+. .+.+++.. .....+++.++.-+.-..
T Consensus 17 ~g~~~s~e~Ki~Ia~~-Ld~lGv~~IE~g~p~~s~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~ea~~~a~~~~i 93 (409)
T COG0119 17 PGVSFSVEEKIRIAKA-LDDLGVDYIEAGFPVASPGDFEFVRAIAEKAGLFICALIAALA--RAIKRDIEALLEAGVDRI 93 (409)
T ss_pred CCCcCCHHHHHHHHHH-HHHcCCCEEEEeCCcCChhhHHHHHHHHHhcCcccchhhhhhH--HhHHhhHHHHHhCCCCEE
Confidence 4568999998898887 59999999998777 5688888777755433 22222221 112235555555544433
Q ss_pred eE--------eecccccc----HHHHHHHHHHHHHcCCcEEEec-CCCCCCchhHhhhhhhcc---cCccccCCCCch
Q 040341 156 LL--------LKVNQIGS----VTESIEAVKMSKRAGWGVMASH-RSGETEDTFIADLSVGLA---TGQIKTGAPCRS 217 (251)
Q Consensus 156 il--------IK~nqiGt----lte~l~~~~~a~~~g~~~ivs~-rsgEt~d~~iadLAva~~---~~~ik~G~~~r~ 217 (251)
-+ ++.+.-.| +.-+.+++++|+++|+.+..+. ....|+-.|++.++-+.. +.-|..++.-+.
T Consensus 94 ~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~~~~~~~Ed~~rt~~~~l~~~~~~~~~~ga~~i~l~DTvG~ 171 (409)
T COG0119 94 HIFIATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLEVRFSAEDATRTDPEFLAEVVKAAIEAGADRINLPDTVGV 171 (409)
T ss_pred EEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccccCCHHHHHHHHHHHHHcCCcEEEECCCcCc
Confidence 22 22222244 4445567779999998888433 224677777777655443 555665554443
No 112
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=77.51 E-value=61 Score=32.80 Aligned_cols=128 Identities=16% Similarity=0.155 Sum_probs=80.6
Q ss_pred CccChhhHHHHHHHhhhcCCceeecCC-----------CCcccHHHHHHHHhhhCCceEE---------EcccccccC--
Q 040341 83 QKVSGDGLKNVYRSFISDHPIVSIEDP-----------FDQDDWEHHAELTGKIGRHVQI---------VGDDLLVTN-- 140 (251)
Q Consensus 83 ~~~s~~elid~~~~l~~~ypI~~IEDP-----------~~e~D~~~~~~l~~~lg~~~~i---------vgDdl~vtn-- 140 (251)
..++.+|++..... +++.++-+||=- +.+++|+....+.+.+. ++++ +|=.-+--|
T Consensus 22 tr~~~~d~l~ia~~-ld~~G~~siE~~GGatf~~~~~~~~e~p~e~lr~l~~~~~-~~~lqml~Rg~n~vg~~~ypddvv 99 (593)
T PRK14040 22 TRLRLDDMLPIAAK-LDKVGYWSLESWGGATFDACIRFLGEDPWERLRELKKAMP-NTPQQMLLRGQNLLGYRHYADDVV 99 (593)
T ss_pred cccCHHHHHHHHHH-HHHcCCCEEEecCCcchhhhccccCCCHHHHHHHHHHhCC-CCeEEEEecCcceeccccCcHHHH
Confidence 46899999887666 699999999983 68999999999998874 4554 332111111
Q ss_pred HHHHHHHHhccCcce-eEeeccccccHHHHHHHHHHHHHcCCcEE--Eec-CCCCCCchhHhhhh---hhcccCccccCC
Q 040341 141 PKRVEKAIKEKTCNA-LLLKVNQIGSVTESIEAVKMSKRAGWGVM--ASH-RSGETEDTFIADLS---VGLATGQIKTGA 213 (251)
Q Consensus 141 ~~~i~~~i~~~a~n~-ilIK~nqiGtlte~l~~~~~a~~~g~~~i--vs~-rsgEt~d~~iadLA---va~~~~~ik~G~ 213 (251)
..+++.+.+.+.--. +-..+|. +.....+++.|++.|..+. |+. .+.+...++++++| +..++..|-+-+
T Consensus 100 ~~~v~~a~~~Gid~~rifd~lnd---~~~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~Gad~i~i~D 176 (593)
T PRK14040 100 ERFVERAVKNGMDVFRVFDAMND---PRNLETALKAVRKVGAHAQGTLSYTTSPVHTLQTWVDLAKQLEDMGVDSLCIKD 176 (593)
T ss_pred HHHHHHHHhcCCCEEEEeeeCCc---HHHHHHHHHHHHHcCCeEEEEEEEeeCCccCHHHHHHHHHHHHHcCCCEEEECC
Confidence 233666655443211 2233455 3567778899999999752 333 24455567777765 555676665444
Q ss_pred CC
Q 040341 214 PC 215 (251)
Q Consensus 214 ~~ 215 (251)
..
T Consensus 177 t~ 178 (593)
T PRK14040 177 MA 178 (593)
T ss_pred CC
Confidence 33
No 113
>PRK06256 biotin synthase; Validated
Probab=77.46 E-value=38 Score=31.05 Aligned_cols=113 Identities=13% Similarity=0.122 Sum_probs=66.8
Q ss_pred ccChhhHHHHHHHhhhcCC--cee---ecCCCCcccHHHHHHHHhhhCC--ceEEEcccccccCHHHHHHHHhccCccee
Q 040341 84 KVSGDGLKNVYRSFISDHP--IVS---IEDPFDQDDWEHHAELTGKIGR--HVQIVGDDLLVTNPKRVEKAIKEKTCNAL 156 (251)
Q Consensus 84 ~~s~~elid~~~~l~~~yp--I~~---IEDP~~e~D~~~~~~l~~~lg~--~~~ivgDdl~vtn~~~i~~~i~~~a~n~i 156 (251)
.++++|+++....+.+... ++. -..|.. .+++.+.++.+.+.. .+.++.-- -..+.+.+++.-+.| ++.+
T Consensus 90 ~~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~~-~~~~~~~e~i~~i~~~~~i~~~~~~-g~l~~e~l~~LkeaG-~~~v 166 (336)
T PRK06256 90 WLDIEELIEAAKEAIEEGAGTFCIVASGRGPSG-KEVDQVVEAVKAIKEETDLEICACL-GLLTEEQAERLKEAG-VDRY 166 (336)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEecCCCCCc-hHHHHHHHHHHHHHhcCCCcEEecC-CcCCHHHHHHHHHhC-CCEE
Confidence 5799999998887644322 222 233433 234445455444321 23333321 224667766654444 3444
Q ss_pred Ee----------eccccccHHHHHHHHHHHHHcCCcE----EEecCCCCCCchhHhhhh
Q 040341 157 LL----------KVNQIGSVTESIEAVKMSKRAGWGV----MASHRSGETEDTFIADLS 201 (251)
Q Consensus 157 lI----------K~nqiGtlte~l~~~~~a~~~g~~~----ivs~rsgEt~d~~iadLA 201 (251)
.+ +++.-.+..+.+++++.++++|+.+ |+|. |||.++++.++.
T Consensus 167 ~~~lEts~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~Gl--gEt~ed~~~~~~ 223 (336)
T PRK06256 167 NHNLETSRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGIIGM--GESLEDRVEHAF 223 (336)
T ss_pred ecCCccCHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeEEeC--CCCHHHHHHHHH
Confidence 43 3444568999999999999999976 5555 898877765554
No 114
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=76.10 E-value=11 Score=34.82 Aligned_cols=35 Identities=17% Similarity=0.178 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHcCCcE----EEecCCCCCCchhHhhhhh
Q 040341 166 VTESIEAVKMSKRAGWGV----MASHRSGETEDTFIADLSV 202 (251)
Q Consensus 166 lte~l~~~~~a~~~g~~~----ivs~rsgEt~d~~iadLAv 202 (251)
..+-+++++.|++.|+.+ |+|| |||..+++.++..
T Consensus 148 ~~~~l~~i~~a~~~Gi~~~s~~i~G~--gEt~ed~~~~l~~ 186 (322)
T TIGR03550 148 PAVRLETIEDAGRLKIPFTTGILIGI--GETREERAESLLA 186 (322)
T ss_pred HHHHHHHHHHHHHcCCCccceeeEeC--CCCHHHHHHHHHH
Confidence 467899999999999887 8887 9999888887655
No 115
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=75.91 E-value=26 Score=33.23 Aligned_cols=149 Identities=18% Similarity=0.201 Sum_probs=95.5
Q ss_pred cCCCCCcHHHHHHHHHHHHhc--CCcc-ceeeeeehhhhcccccCCcceeecCCCCCCCCCCccC--hhh-HHHHHHHhh
Q 040341 25 APNIQESYEGFELLKTAIAKG--GYIG-KIVIGMDVAASEFYDSKDKTYDLNFKEENNDGSQKVS--GDG-LKNVYRSFI 98 (251)
Q Consensus 25 ap~~~~~eeal~~i~~Ai~~a--Gy~~-kI~iglD~Aase~~~~~~g~Y~l~~~~~~~d~~~~~s--~~e-lid~~~~l~ 98 (251)
.|++..++...+.+.+++... +|.+ .=.+.+.-|..++|.. .|.++... +.....| ..+ +.-.+..++
T Consensus 37 ~Pd~~~p~~i~~a~~~a~~~~~~~Y~~~~G~~~LReaia~~~~~---~~~~~~~~---~~eiivt~Ga~~al~~~~~a~~ 110 (393)
T COG0436 37 EPDFPTPEHIIEAAIEALEEGGTHYTPSAGIPELREAIAEKYKR---RYGLDVDP---EEEIIVTAGAKEALFLAFLALL 110 (393)
T ss_pred CCCCCCCHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHH---HhCCCCCC---CCeEEEeCCHHHHHHHHHHHhc
Confidence 688999999999999999765 4653 2223344566667654 34333211 1111222 233 333444444
Q ss_pred hcCCceeecCCCCcccHHHHHHHHhhhCCceEEEc-----ccccccCHHHHHHHHhccCcceeEe-eccc----cccHHH
Q 040341 99 SDHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVG-----DDLLVTNPKRVEKAIKEKTCNALLL-KVNQ----IGSVTE 168 (251)
Q Consensus 99 ~~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivg-----Ddl~vtn~~~i~~~i~~~a~n~ilI-K~nq----iGtlte 168 (251)
+.=.=|.|-+|.. ..|..+.+..|.++..|- ++ +--+++.++.++.. .+.+++| -||. +=+-.+
T Consensus 111 ~pGDeVlip~P~Y----~~y~~~~~~~gg~~v~v~l~~~~~~-f~~d~~~l~~~i~~-ktk~i~ln~P~NPTGav~~~~~ 184 (393)
T COG0436 111 NPGDEVLIPDPGY----PSYEAAVKLAGGKPVPVPLDEEENG-FKPDLEDLEAAITP-KTKAIILNSPNNPTGAVYSKEE 184 (393)
T ss_pred CCCCEEEEeCCCC----cCHHHHHHhcCCEEEEEeCCcCccC-CcCCHHHHHhhcCc-cceEEEEeCCCCCcCcCCCHHH
Confidence 4433488899976 456677777776655554 35 67789999999988 6666666 5754 556677
Q ss_pred HHHHHHHHHHcCCcEEE
Q 040341 169 SIEAVKMSKRAGWGVMA 185 (251)
Q Consensus 169 ~l~~~~~a~~~g~~~iv 185 (251)
.-+++++|+++++-++.
T Consensus 185 l~~i~~~a~~~~i~ii~ 201 (393)
T COG0436 185 LKAIVELAREHDIIIIS 201 (393)
T ss_pred HHHHHHHHHHcCeEEEE
Confidence 88899999999986544
No 116
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=75.52 E-value=58 Score=28.81 Aligned_cols=93 Identities=16% Similarity=0.105 Sum_probs=55.9
Q ss_pred ChhhHHHHHHHhhhcCCce--ee--cCC---CCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEe
Q 040341 86 SGDGLKNVYRSFISDHPIV--SI--EDP---FDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLL 158 (251)
Q Consensus 86 s~~elid~~~~l~~~ypI~--~I--EDP---~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilI 158 (251)
+..+++++.+. +++.++- .+ .+. ...-||+-..++.+.++-++..+|+ +++++++.+.++.+.+.++++
T Consensus 153 ~~~~~~~~~~~-l~~~G~~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GG---i~s~~di~~~~~~g~~dgv~~ 228 (254)
T TIGR00735 153 TGLDAVEWAKE-VEKLGAGEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGG---AGKPEHFYEAFTKGKADAALA 228 (254)
T ss_pred CCCCHHHHHHH-HHHcCCCEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeCC---CCCHHHHHHHHHcCCcceeeE
Confidence 45566665555 4666632 22 111 1123678888888887444444455 689999999999987888765
Q ss_pred e-ccccccHHHHHHHHHHHHHcCCcE
Q 040341 159 K-VNQIGSVTESIEAVKMSKRAGWGV 183 (251)
Q Consensus 159 K-~nqiGtlte~l~~~~~a~~~g~~~ 183 (251)
= .---|.++ ..++.+.++++|+++
T Consensus 229 g~a~~~~~~~-~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 229 ASVFHYREIT-IGEVKEYLAERGIPV 253 (254)
T ss_pred hHHHhCCCCC-HHHHHHHHHHCCCcc
Confidence 2 21112222 335566677888764
No 117
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=75.09 E-value=12 Score=37.48 Aligned_cols=107 Identities=12% Similarity=0.151 Sum_probs=79.5
Q ss_pred ChhhHHHHHHHhhhcCC--ceeecCCCCcccHHHHHHHHhhh---CCceEEEcccccccCHHHHHHHHhccCcceeEeec
Q 040341 86 SGDGLKNVYRSFISDHP--IVSIEDPFDQDDWEHHAELTGKI---GRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKV 160 (251)
Q Consensus 86 s~~elid~~~~l~~~yp--I~~IEDP~~e~D~~~~~~l~~~l---g~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~ 160 (251)
+.+.-++...+| .+-+ ||=+==| ..+|-++...+.+++ |-.+|+|.|--| +++-.-.+++. +..+=|-|
T Consensus 43 D~~atv~Qi~~L-~~aGceiVRvtvp-~~~~A~al~~I~~~L~~~g~~iPLVADIHF--~~~~A~~a~~~--vdkiRINP 116 (606)
T PRK00694 43 DVDGTVRQICAL-QEWGCDIVRVTVQ-GLKEAQACEHIKERLIQQGISIPLVADIHF--FPQAAMHVADF--VDKVRINP 116 (606)
T ss_pred cHHHHHHHHHHH-HHcCCCEEEEcCC-CHHHHHhHHHHHHHHhccCCCCCEEeecCC--ChHHHHHHHHh--cCceEECC
Confidence 344445556664 3334 6654433 346778888888883 448999999654 88888777775 88899999
Q ss_pred ccccc----------------------HHHHHHHHHHHHHcCCcEEEecCCCCCCchhHh
Q 040341 161 NQIGS----------------------VTESIEAVKMSKRAGWGVMASHRSGETEDTFIA 198 (251)
Q Consensus 161 nqiGt----------------------lte~l~~~~~a~~~g~~~ivs~rsgEt~d~~ia 198 (251)
+.+|. -.....+++.|+++|..+-||..+|--++..+.
T Consensus 117 GNi~~~~k~F~~~~YtDeeY~~el~~I~e~~~~vV~~ake~~~~IRIGvN~GSL~~~i~~ 176 (606)
T PRK00694 117 GNYVDKRNMFTGKIYTDEQYAHSLLRLEEKFSPLVEKCKRLGKAMRIGVNHGSLSERVMQ 176 (606)
T ss_pred cccCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEecCCcCchHHHHH
Confidence 99998 567888999999999999999998876655444
No 118
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=74.18 E-value=52 Score=30.68 Aligned_cols=109 Identities=10% Similarity=0.049 Sum_probs=59.4
Q ss_pred cChhhHHHHHHHhhhcCC-----ceeecCCCCcccHHHHHHHHhhhC---CceEEEc---cc-------ccccCHHHHHH
Q 040341 85 VSGDGLKNVYRSFISDHP-----IVSIEDPFDQDDWEHHAELTGKIG---RHVQIVG---DD-------LLVTNPKRVEK 146 (251)
Q Consensus 85 ~s~~elid~~~~l~~~yp-----I~~IEDP~~e~D~~~~~~l~~~lg---~~~~ivg---Dd-------l~vtn~~~i~~ 146 (251)
++.+|+++..++. .+.+ |++-++| +.+++-+.++.+.+. ..+.++. ++ +-.++.+.+++
T Consensus 79 l~~eeI~~~a~~~-~~~G~~~v~l~~G~~p--~~~~~~~~e~i~~Ik~~~p~i~i~~~~~~ei~~~~~~~g~~~~e~l~~ 155 (351)
T TIGR03700 79 MSLEEIVARVKEA-YAPGATEVHIVGGLHP--NLPFEWYLDMIRTLKEAYPDLHVKAFTAVEIHHFSKISGLPTEEVLDE 155 (351)
T ss_pred CCHHHHHHHHHHH-HHCCCcEEEEecCCCC--CCCHHHHHHHHHHHHHHCCCceEEeCCHHHHHHHHHHcCCCHHHHHHH
Confidence 6899988877764 4444 3344555 234555555554442 2355653 11 11123333554
Q ss_pred HHhccCccee-------------EeeccccccHHHHHHHHHHHHHcCCcE----EEecCCCCCCchhHhh
Q 040341 147 AIKEKTCNAL-------------LLKVNQIGSVTESIEAVKMSKRAGWGV----MASHRSGETEDTFIAD 199 (251)
Q Consensus 147 ~i~~~a~n~i-------------lIK~nqiGtlte~l~~~~~a~~~g~~~----ivs~rsgEt~d~~iad 199 (251)
..+.|..... .|.+++ .+..+-+++++.|++.|+.+ |+|+ |||....+-|
T Consensus 156 LkeAGld~~~~~g~E~~~~~v~~~i~~~~-~~~~~~l~~i~~a~~~Gi~~~sg~i~Gl--gEt~edrv~~ 222 (351)
T TIGR03700 156 LKEAGLDSMPGGGAEIFAEEVRQQICPEK-ISAERWLEIHRTAHELGLKTNATMLYGH--IETPAHRVDH 222 (351)
T ss_pred HHHcCCCcCCCCcccccCHHHHhhcCCCC-CCHHHHHHHHHHHHHcCCCcceEEEeeC--CCCHHHHHHH
Confidence 4443322111 122333 24567789999999999988 6776 7886544433
No 119
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=73.11 E-value=35 Score=33.38 Aligned_cols=100 Identities=15% Similarity=0.247 Sum_probs=74.1
Q ss_pred ccChhhHHHHHHHhhhcCC-c-eeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeecc
Q 040341 84 KVSGDGLKNVYRSFISDHP-I-VSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVN 161 (251)
Q Consensus 84 ~~s~~elid~~~~l~~~yp-I-~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~n 161 (251)
.+++.++...|.. - -. | |.-|..|-.-+++......+.+ .+||.--| |+.++..|..+-..|+ ++|||=..
T Consensus 69 ~~d~~~~a~~y~~--g-A~aiSVlTe~~~F~Gs~~~l~~vr~~v--~~PvLrKD-Fiid~~QI~ea~~~GA-DavLLI~~ 141 (454)
T PRK09427 69 DFDPAEIARVYKH--Y-ASAISVLTDEKYFQGSFDFLPIVRAIV--TQPILCKD-FIIDPYQIYLARYYGA-DAILLMLS 141 (454)
T ss_pred CCCHHHHHHHHHc--C-CeEEEEecCcCcCCCCHHHHHHHHHhC--CCCEEecc-ccCCHHHHHHHHHcCC-CchhHHHH
Confidence 4677788777732 2 23 3 2337788889999999999988 78999999 7999999999877754 55555333
Q ss_pred ccccHHHHHHHHHHHHHcCCcEEEecCCCC
Q 040341 162 QIGSVTESIEAVKMSKRAGWGVMASHRSGE 191 (251)
Q Consensus 162 qiGtlte~l~~~~~a~~~g~~~ivs~rsgE 191 (251)
=.+ -.+.-+.+++|++.|+.++|-.++.+
T Consensus 142 ~L~-~~~l~~l~~~a~~lGl~~lvEvh~~~ 170 (454)
T PRK09427 142 VLD-DEQYRQLAAVAHSLNMGVLTEVSNEE 170 (454)
T ss_pred hCC-HHHHHHHHHHHHHcCCcEEEEECCHH
Confidence 222 23566788999999999999887544
No 120
>PRK14847 hypothetical protein; Provisional
Probab=73.01 E-value=63 Score=30.33 Aligned_cols=120 Identities=13% Similarity=0.117 Sum_probs=75.9
Q ss_pred CCCccChhhHHHHHHHhhhcCCceeecCCC---CcccHHHHHHHHhhhC--CceEEEcccccccCHHHHHHHHhccCc--
Q 040341 81 GSQKVSGDGLKNVYRSFISDHPIVSIEDPF---DQDDWEHHAELTGKIG--RHVQIVGDDLLVTNPKRVEKAIKEKTC-- 153 (251)
Q Consensus 81 ~~~~~s~~elid~~~~l~~~ypI~~IEDP~---~e~D~~~~~~l~~~lg--~~~~ivgDdl~vtn~~~i~~~i~~~a~-- 153 (251)
++..+|++|=+.+.+. +++.+|-.||=.| .++|++.-+++.+... ..+.|++ +.-...++|..+++....
T Consensus 47 pGv~fs~eeKl~IA~~-L~~lGVd~IEvG~Pa~s~~e~e~ir~I~~~~~~~~~~~i~~--~~r~~~~dId~a~e~~~~~~ 123 (333)
T PRK14847 47 LIEPMDGARKLRLFEQ-LVAVGLKEIEVAFPSASQTDFDFVRKLIDERRIPDDVTIEA--LTQSRPDLIARTFEALAGSP 123 (333)
T ss_pred CCCCCCHHHHHHHHHH-HHHcCCCEEEeeCCCCCHHHHHHHHHHHHhCCCCCCcEEEE--EecCcHHHHHHHHHHhCCCC
Confidence 4568999998887766 6999999999988 5788888888865521 1333432 122357788887775331
Q ss_pred -ceeEe-----------ec--cccccHHHHHHHHHHHHHcCC-------cEEEec-CCCCCCchhHhhhhhh
Q 040341 154 -NALLL-----------KV--NQIGSVTESIEAVKMSKRAGW-------GVMASH-RSGETEDTFIADLSVG 203 (251)
Q Consensus 154 -n~ilI-----------K~--nqiGtlte~l~~~~~a~~~g~-------~~ivs~-rsgEt~d~~iadLAva 203 (251)
..|.| |. ++---+..+.+++++|++.|. .|-+|. ....|+-+|+..++-+
T Consensus 124 ~~~Vhi~~p~Sd~h~~~kl~~s~~~vl~~~~~~v~~Ak~~~~~~~g~~~~V~~~~EDasRad~dfL~~~~~~ 195 (333)
T PRK14847 124 RAIVHLYNPIAPQWRRIVFGMSRAEIKEIALAGTRQIRALADANPGTQWIYEYSPETFSLAELDFAREVCDA 195 (333)
T ss_pred CCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccccCCCceEEEEeeecCCCCCHHHHHHHHHH
Confidence 11221 12 222334455678889999954 456665 2344777888877653
No 121
>COG1012 PutA NAD-dependent aldehyde dehydrogenases [Energy production and conversion]
Probab=71.69 E-value=2 Score=42.03 Aligned_cols=86 Identities=21% Similarity=0.258 Sum_probs=61.6
Q ss_pred HHhccCcceeEeeccccccHHHHHHHHHHHHHcCCc-----EEEecCCCCCCchhHhhhhhhcccCccccCCCCchhHHH
Q 040341 147 AIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAGWG-----VMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLA 221 (251)
Q Consensus 147 ~i~~~a~n~ilIK~nqiGtlte~l~~~~~a~~~g~~-----~ivs~rsgEt~d~~iadLAva~~~~~ik~G~~~r~Er~a 221 (251)
+..+-+.|++++||+....+| ++.+++++.++|++ ++.+.. .++.+..+.|--|.. ..++|+..-+.+++
T Consensus 155 apALaaGntVV~KPse~tp~s-a~~l~~~~~~aglP~Gv~nvv~g~~-~~~g~~l~~~p~v~~---i~FTGSt~~G~~i~ 229 (472)
T COG1012 155 APALAAGNTVVLKPSEQTPLS-ALALAELAAEAGLPAGVLNVVTGGG-AEVGDALVAHPDVDA---ISFTGSTAVGRAIA 229 (472)
T ss_pred HHHHHcCCEEEEECcccCcHH-HHHHHHHHHHhCCCCCeEEEEeCCC-chHHHHHhcCCCCCE---EEEECChHHHHHHH
Confidence 455679999999999999999 99999999999862 344433 445555555544433 56889888888887
Q ss_pred Hhh--HHHHHHHHhCCCc
Q 040341 222 KYN--QLLRIEEELGPAA 237 (251)
Q Consensus 222 KyN--~llrie~~l~~~~ 237 (251)
+.- ++-++-=|||++.
T Consensus 230 ~~Aa~~~k~~~lELGGk~ 247 (472)
T COG1012 230 AAAAANLKPVTLELGGKS 247 (472)
T ss_pred HHHhhcCCcEEEECCCCC
Confidence 766 6666666666443
No 122
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=71.52 E-value=40 Score=31.06 Aligned_cols=129 Identities=16% Similarity=0.166 Sum_probs=74.8
Q ss_pred cChhhHHHHHHHhhhcCC-----ceeecCC-CCcccHHHHHHHHhhhCC-----ceEEEcccccccCHHHHHHHHhccC-
Q 040341 85 VSGDGLKNVYRSFISDHP-----IVSIEDP-FDQDDWEHHAELTGKIGR-----HVQIVGDDLLVTNPKRVEKAIKEKT- 152 (251)
Q Consensus 85 ~s~~elid~~~~l~~~yp-----I~~IEDP-~~e~D~~~~~~l~~~lg~-----~~~ivgDdl~vtn~~~i~~~i~~~a- 152 (251)
.+++|..+..+.+ .+.+ |++..-+ +...+...|.++.+.+.. ++.++-.|. ..+.+.++...+.+.
T Consensus 91 ~~~eei~~~a~~~-~~~GlkevvLTsv~~ddl~d~g~~~l~~li~~I~~~~p~i~Ievl~~d~-~g~~e~l~~l~~aG~d 168 (302)
T TIGR00510 91 PDPEEPAKLAETI-KDMGLKYVVITSVDRDDLEDGGASHLAECIEAIREKLPNIKIETLVPDF-RGNIAALDILLDAPPD 168 (302)
T ss_pred CCHHHHHHHHHHH-HHCCCCEEEEEeecCCCcccccHHHHHHHHHHHHhcCCCCEEEEeCCcc-cCCHHHHHHHHHcCch
Confidence 4677776666664 4333 3344432 333345667777766632 244444332 224455554443322
Q ss_pred --------cceeEeeccccccHHHHHHHHHHHHHc--CCc----EEEecCCCCCCchhHhhhh--hhcccCccccCCCCc
Q 040341 153 --------CNALLLKVNQIGSVTESIEAVKMSKRA--GWG----VMASHRSGETEDTFIADLS--VGLATGQIKTGAPCR 216 (251)
Q Consensus 153 --------~n~ilIK~nqiGtlte~l~~~~~a~~~--g~~----~ivs~rsgEt~d~~iadLA--va~~~~~ik~G~~~r 216 (251)
+..++=++.+-.+..+.+++++.+++. |+. +|||+ |||++.++..|- -.++..++-+|--.|
T Consensus 169 v~~hnlEt~~~l~~~vrr~~t~e~~Le~l~~ak~~~pgi~~~TgiIVGl--GETeee~~etl~~Lrelg~d~v~igqYl~ 246 (302)
T TIGR00510 169 VYNHNLETVERLTPFVRPGATYRWSLKLLERAKEYLPNLPTKSGIMVGL--GETNEEIKQTLKDLRDHGVTMVTLGQYLR 246 (302)
T ss_pred hhcccccchHHHHHHhCCCCCHHHHHHHHHHHHHhCCCCeecceEEEEC--CCCHHHHHHHHHHHHhcCCCEEEeecccC
Confidence 122222345567999999999999998 554 49999 999998776554 345556666665544
Q ss_pred h
Q 040341 217 S 217 (251)
Q Consensus 217 ~ 217 (251)
.
T Consensus 247 p 247 (302)
T TIGR00510 247 P 247 (302)
T ss_pred C
Confidence 4
No 123
>PRK06852 aldolase; Validated
Probab=71.02 E-value=17 Score=33.67 Aligned_cols=72 Identities=15% Similarity=0.171 Sum_probs=49.6
Q ss_pred HHHHHHhccC-----cceeEeeccc-----cccHHHHHHHHHHHHHcCCcEEE-ecCCCCC----Cc----hhHhhhhhh
Q 040341 143 RVEKAIKEKT-----CNALLLKVNQ-----IGSVTESIEAVKMSKRAGWGVMA-SHRSGET----ED----TFIADLSVG 203 (251)
Q Consensus 143 ~i~~~i~~~a-----~n~ilIK~nq-----iGtlte~l~~~~~a~~~g~~~iv-s~rsgEt----~d----~~iadLAva 203 (251)
.++.|+++++ |.+|-+-++- --.+.+.-++++.|++.|+++++ ..-.|+. .| ...+.+|+-
T Consensus 120 sVeeAvrlG~~~~~~AdAV~v~v~~Gs~~E~~ml~~l~~v~~ea~~~GlPll~~~yprG~~i~~~~~~~~ia~aaRiaaE 199 (304)
T PRK06852 120 DVEQVVEFKENSGLNILGVGYTIYLGSEYESEMLSEAAQIIYEAHKHGLIAVLWIYPRGKAVKDEKDPHLIAGAAGVAAC 199 (304)
T ss_pred cHHHHHhcCCccCCCceEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEeeccCcccCCCccHHHHHHHHHHHHH
Confidence 4667888875 6676666543 22577778888999999999975 3322431 11 234567888
Q ss_pred cccCccccCCC
Q 040341 204 LATGQIKTGAP 214 (251)
Q Consensus 204 ~~~~~ik~G~~ 214 (251)
+|+.++|+--|
T Consensus 200 LGADIVKv~y~ 210 (304)
T PRK06852 200 LGADFVKVNYP 210 (304)
T ss_pred HcCCEEEecCC
Confidence 99999998777
No 124
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=70.72 E-value=59 Score=29.62 Aligned_cols=34 Identities=29% Similarity=0.369 Sum_probs=25.6
Q ss_pred cHHHHHHHHHHHHHcCCcE----EEecCCCCCCchhHhhh
Q 040341 165 SVTESIEAVKMSKRAGWGV----MASHRSGETEDTFIADL 200 (251)
Q Consensus 165 tlte~l~~~~~a~~~g~~~----ivs~rsgEt~d~~iadL 200 (251)
+..+-+++++.|++.|+.+ |+|+ +||.++++-++
T Consensus 143 t~~~~l~~i~~a~~~Gi~~~s~~iiG~--~Et~ed~~~~l 180 (309)
T TIGR00423 143 SSDEWLEVIKTAHRLGIPTTATMMFGH--VENPEHRVEHL 180 (309)
T ss_pred CHHHHHHHHHHHHHcCCCceeeEEecC--CCCHHHHHHHH
Confidence 6667799999999999988 5554 58766655443
No 125
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=70.03 E-value=57 Score=29.11 Aligned_cols=111 Identities=14% Similarity=0.153 Sum_probs=64.0
Q ss_pred CccChhhHHHHHHHhhhcCCc--ee----ecCCCCcc---cHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCc
Q 040341 83 QKVSGDGLKNVYRSFISDHPI--VS----IEDPFDQD---DWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTC 153 (251)
Q Consensus 83 ~~~s~~elid~~~~l~~~ypI--~~----IEDP~~e~---D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~ 153 (251)
...+++++++..+.+ .+.++ ++ -+.|.... .+....+..++++ +.++..- -..+.+.+++.-+.| +
T Consensus 60 ~~~~~eei~~~~~~~-~~~g~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~~--i~~~~~~-g~~~~e~l~~Lk~aG-~ 134 (296)
T TIGR00433 60 RLKKVDEVLEEARKA-KAAGATRFCLVASGRGPKDREFMEYVEAMVQIVEEMG--LKTCATL-GLLDPEQAKRLKDAG-L 134 (296)
T ss_pred cCCCHHHHHHHHHHH-HHCCCCEEEEEEecCCCChHHHHHHHHHHHHHHHhCC--CeEEecC-CCCCHHHHHHHHHcC-C
Confidence 457888988877764 43342 12 23555433 3444444444443 4443321 124577777655444 3
Q ss_pred ceeEe----------eccccccHHHHHHHHHHHHHcCCcE----EEecCCCCCCchhHhhh
Q 040341 154 NALLL----------KVNQIGSVTESIEAVKMSKRAGWGV----MASHRSGETEDTFIADL 200 (251)
Q Consensus 154 n~ilI----------K~nqiGtlte~l~~~~~a~~~g~~~----ivs~rsgEt~d~~iadL 200 (251)
+.+.+ ++..-.+..+.+++++.++++|+.+ |+|. +||.+.....+
T Consensus 135 ~~v~i~~E~~~~~~~~i~~~~s~~~~~~ai~~l~~~Gi~v~~~~i~Gl--~et~~d~~~~~ 193 (296)
T TIGR00433 135 DYYNHNLDTSQEFYSNIISTHTYDDRVDTLENAKKAGLKVCSGGIFGL--GETVEDRIGLA 193 (296)
T ss_pred CEEEEcccCCHHHHhhccCCCCHHHHHHHHHHHHHcCCEEEEeEEEeC--CCCHHHHHHHH
Confidence 33322 1233468889999999999999997 5665 78766554433
No 126
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=69.36 E-value=95 Score=28.90 Aligned_cols=102 Identities=15% Similarity=0.082 Sum_probs=60.4
Q ss_pred hhhHHHHHHHhhhcCC-ceeecCC-CC--cccHHHHHHHHhhhCCceEEEcccccc---------cCHH---HHHHHHhc
Q 040341 87 GDGLKNVYRSFISDHP-IVSIEDP-FD--QDDWEHHAELTGKIGRHVQIVGDDLLV---------TNPK---RVEKAIKE 150 (251)
Q Consensus 87 ~~elid~~~~l~~~yp-I~~IEDP-~~--e~D~~~~~~l~~~lg~~~~ivgDdl~v---------tn~~---~i~~~i~~ 150 (251)
.+.+++.+.+.....| |++|--. -. ++.|+.|.++.+++++.+..+-=.+++ .+++ ++-+++..
T Consensus 124 ~~~~~~~l~~~~~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~ 203 (344)
T PRK05286 124 ADALAERLKKAYRGIPLGINIGKNKDTPLEDAVDDYLICLEKLYPYADYFTVNISSPNTPGLRDLQYGEALDELLAALKE 203 (344)
T ss_pred HHHHHHHHHHhcCCCcEEEEEecCCCCCcccCHHHHHHHHHHHHhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHH
Confidence 4444444444223457 6788321 11 458999999998886322111101122 2223 33344444
Q ss_pred cCc-----ceeEeeccccccHHHHHHHHHHHHHcCCcEEEecC
Q 040341 151 KTC-----NALLLKVNQIGSVTESIEAVKMSKRAGWGVMASHR 188 (251)
Q Consensus 151 ~a~-----n~ilIK~nqiGtlte~l~~~~~a~~~g~~~ivs~r 188 (251)
... -.|.+|++---+..+..++++.+.++|..-++-+.
T Consensus 204 ~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~n 246 (344)
T PRK05286 204 AQAELHGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATN 246 (344)
T ss_pred HHhccccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeC
Confidence 333 47999998655667899999999999998876664
No 127
>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]
Probab=69.23 E-value=20 Score=34.36 Aligned_cols=72 Identities=26% Similarity=0.303 Sum_probs=57.3
Q ss_pred HHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeecc---ccccHHHHHHHHHHHHHcCCcEEEecCCCC
Q 040341 118 HAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVN---QIGSVTESIEAVKMSKRAGWGVMASHRSGE 191 (251)
Q Consensus 118 ~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~n---qiGtlte~l~~~~~a~~~g~~~ivs~rsgE 191 (251)
.....+.-|.+..-||+- ..|..++.+.+|.++++..+-++-+ +-+.+++. +.+++|+++|+++++-..||.
T Consensus 124 v~d~~~~aG~~l~EvG~t-n~t~~~d~~~AIne~ta~llkV~s~~~~f~~~l~~~-~l~~ia~~~~lpvivD~aSg~ 198 (395)
T COG1921 124 VPDIIRLAGAKLVEVGTT-NRTHLKDYELAINENTALLLKVHSSNYGFTGMLSEE-ELVEIAHEKGLPVIVDLASGA 198 (395)
T ss_pred hhHHHHHcCCEEEEeccc-CcCCHHHHHHHhccCCeeEEEEeeccccccccccHH-HHHHHHHHcCCCEEEecCCcc
Confidence 445667778899999997 7899999999999988766555533 44566554 688999999999999999865
No 128
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=69.08 E-value=1e+02 Score=29.85 Aligned_cols=118 Identities=14% Similarity=0.145 Sum_probs=71.2
Q ss_pred CccChhhHHHHHHHhhhcC---CceeecCCCCcccHHHHHHHHhhhCC-ceEE--EcccccccCHHHHHHHHhccCccee
Q 040341 83 QKVSGDGLKNVYRSFISDH---PIVSIEDPFDQDDWEHHAELTGKIGR-HVQI--VGDDLLVTNPKRVEKAIKEKTCNAL 156 (251)
Q Consensus 83 ~~~s~~elid~~~~l~~~y---pI~~IEDP~~e~D~~~~~~l~~~lg~-~~~i--vgDdl~vtn~~~i~~~i~~~a~n~i 156 (251)
+.++++.+++-++.+.++| .-+++.|.---.|..-+.+|.+.+.. ++.. -... . .+++.++...+.| |+.+
T Consensus 225 r~rs~e~V~~Ei~~~~~~~~~~~~i~f~Dd~f~~~~~~~~~l~~~l~~~~i~~~~~~~~-~-~~~e~l~~l~~aG-~~~v 301 (472)
T TIGR03471 225 RTRSAESVIEEVKYALENFPEVREFFFDDDTFTDDKPRAEEIARKLGPLGVTWSCNARA-N-VDYETLKVMKENG-LRLL 301 (472)
T ss_pred EeCCHHHHHHHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHhhcCceEEEEecC-C-CCHHHHHHHHHcC-CCEE
Confidence 3568899999888887776 23555554333444445555544421 1221 1111 1 2566666655443 4554
Q ss_pred Ee-----------eccccccHHHHHHHHHHHHHcCCcEEEec---CCCCCCchhHhhhhhh
Q 040341 157 LL-----------KVNQIGSVTESIEAVKMSKRAGWGVMASH---RSGETEDTFIADLSVG 203 (251)
Q Consensus 157 lI-----------K~nqiGtlte~l~~~~~a~~~g~~~ivs~---rsgEt~d~~iadLAva 203 (251)
.| ++++--++.+..++++.++++|+.+.++- -.|||.+++...+..+
T Consensus 302 ~iGiES~s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~~~ 362 (472)
T TIGR03471 302 LVGYESGDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDFA 362 (472)
T ss_pred EEcCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHHHH
Confidence 43 24555688899999999999999984432 2588988776555443
No 129
>PRK09234 fbiC FO synthase; Reviewed
Probab=68.99 E-value=26 Score=36.98 Aligned_cols=134 Identities=12% Similarity=0.179 Sum_probs=68.9
Q ss_pred CCCcHHHHHHHHHHHHhcCCcc-ceeeeeehhh-----hcccccCCcceeecCCCCCCCCCCccChhhHHHHHHHhhhc-
Q 040341 28 IQESYEGFELLKTAIAKGGYIG-KIVIGMDVAA-----SEFYDSKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISD- 100 (251)
Q Consensus 28 ~~~~eeal~~i~~Ai~~aGy~~-kI~iglD~Aa-----se~~~~~~g~Y~l~~~~~~~d~~~~~s~~elid~~~~l~~~- 100 (251)
+-++||.++.+.++. +.|.+. -|..|.+... .+.++. -.|+ .+.+-+.+..+.+.++
T Consensus 101 ~ls~eEIl~~a~~~~-~~G~~e~l~t~G~~P~~~~~~~~~~l~~--~gy~-------------~~~ey~~~~~~~ik~~~ 164 (843)
T PRK09234 101 YLSPDEVLDIARAGA-AAGCKEALFTLGDRPEDRWPEAREWLDE--RGYD-------------STLDYVRAMAIRVLEET 164 (843)
T ss_pred cCCHHHHHHHHHHHH-HCCCCEEEEecCCCCccccccccccccc--cccc-------------cHHHHHHHHHHHHHHhc
Confidence 347899999999977 788875 3555555431 111111 0110 0122233333332233
Q ss_pred --CCceeecCCCCcccHHHHHHHHhhhCCceEEEcccccc-cCHHHHHHHHhccCcceeEeeccccccHHHHHHHHHHHH
Q 040341 101 --HPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLV-TNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSK 177 (251)
Q Consensus 101 --ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~v-tn~~~i~~~i~~~a~n~ilIK~nqiGtlte~l~~~~~a~ 177 (251)
+|-+++- .|..+++..+++..... | +.. |..+++-+ .++-+--+.|.+... +=+++++.|+
T Consensus 165 gl~p~i~~G-~ls~~E~~~Lk~~g~s~-------g--l~lEt~~~~l~~----~~g~~h~~~P~K~~~--~RL~ti~~A~ 228 (843)
T PRK09234 165 GLLPHLNPG-VMSWSELARLKPVAPSM-------G--MMLETTSRRLFE----EKGGPHYGSPDKDPA--VRLRVLEDAG 228 (843)
T ss_pred CCCceeeeC-CCCHHHHHHHHHhcCcC-------C--CCHHHHHHHHHH----hhcccccCCCCCCHH--HHHHHHHHHH
Confidence 5555664 56666655554332222 1 111 11222311 122223345665444 4599999999
Q ss_pred HcCCcE----EEecCCCCCCch
Q 040341 178 RAGWGV----MASHRSGETEDT 195 (251)
Q Consensus 178 ~~g~~~----ivs~rsgEt~d~ 195 (251)
+.|+++ ++|+ |||...
T Consensus 229 ~lGi~~tsG~L~Gi--GEt~ed 248 (843)
T PRK09234 229 RLSVPFTTGILIGI--GETLAE 248 (843)
T ss_pred HcCCCccceEEEEC--CCCHHH
Confidence 999987 7777 898443
No 130
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=68.81 E-value=8 Score=30.13 Aligned_cols=54 Identities=17% Similarity=0.264 Sum_probs=42.5
Q ss_pred ceeEeeccccccHHHHHHHHHHHHHcCCcEEEecCCCCCCchhHhhhhhhcccC
Q 040341 154 NALLLKVNQIGSVTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLATG 207 (251)
Q Consensus 154 n~ilIK~nqiGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d~~iadLAva~~~~ 207 (251)
+-++|=+++-|.-.+++++++.|+++|.+++.=....++.-...+|..+-..++
T Consensus 48 ~dl~I~iS~SG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad~~l~~~~~ 101 (120)
T cd05710 48 KSVVILASHSGNTKETVAAAKFAKEKGATVIGLTDDEDSPLAKLADYVIVYGFE 101 (120)
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHcCCeEEEEECCCCCcHHHhCCEEEEccCC
Confidence 456777899999999999999999999988766655666666677777666544
No 131
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=68.34 E-value=66 Score=29.95 Aligned_cols=70 Identities=10% Similarity=0.167 Sum_probs=42.3
Q ss_pred cChhhHHHHHHHhhhcCC-ceeec-------C---------CCC-cc--cHHHHHHHHhhhCCceEEEcccccccCHHHH
Q 040341 85 VSGDGLKNVYRSFISDHP-IVSIE-------D---------PFD-QD--DWEHHAELTGKIGRHVQIVGDDLLVTNPKRV 144 (251)
Q Consensus 85 ~s~~elid~~~~l~~~yp-I~~IE-------D---------P~~-e~--D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i 144 (251)
.|.+|.+++.+. +++.+ +-+|+ . |.. .. +|+.-+.+.+.+ +++|++-- -+++++.+
T Consensus 225 ~~~~e~~~~~~~-l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~--~ipvi~~G-~i~~~~~~ 300 (343)
T cd04734 225 LSPDEALEIAAR-LAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAV--DLPVFHAG-RIRDPAEA 300 (343)
T ss_pred CCHHHHHHHHHH-HHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHc--CCCEEeeC-CCCCHHHH
Confidence 577888876665 56665 33332 1 111 11 244445666667 45555443 35789999
Q ss_pred HHHHhccCcceeEe
Q 040341 145 EKAIKEKTCNALLL 158 (251)
Q Consensus 145 ~~~i~~~a~n~ilI 158 (251)
+++++.+.++.|.+
T Consensus 301 ~~~l~~~~~D~V~~ 314 (343)
T cd04734 301 EQALAAGHADMVGM 314 (343)
T ss_pred HHHHHcCCCCeeee
Confidence 99999888887654
No 132
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=68.00 E-value=61 Score=31.01 Aligned_cols=101 Identities=17% Similarity=0.273 Sum_probs=65.1
Q ss_pred cChhhHHHHHHHhhhcC---C-ceeecCCCCcccHHHHHHHHhhhCCc-eEE------E------cccccccCHHHHH--
Q 040341 85 VSGDGLKNVYRSFISDH---P-IVSIEDPFDQDDWEHHAELTGKIGRH-VQI------V------GDDLLVTNPKRVE-- 145 (251)
Q Consensus 85 ~s~~elid~~~~l~~~y---p-I~~IEDP~~e~D~~~~~~l~~~lg~~-~~i------v------gDdl~vtn~~~i~-- 145 (251)
+..+.+++.+.++-++| | |+||-.+..++||....+..+..|-. +.+ + |. .+-.+|+.+.
T Consensus 95 ~g~~~~l~~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~-~~gq~~e~~~~i 173 (385)
T PLN02495 95 RPFETMLAEFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGA-AVGQDCDLLEEV 173 (385)
T ss_pred cCHHHHHHHHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccch-hhccCHHHHHHH
Confidence 35677777777755566 5 77988788888887777666665421 111 1 11 1224566554
Q ss_pred -HHHhccCcceeEeeccccccHHHHHHHHHHHHHcCCcEEEecC
Q 040341 146 -KAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAGWGVMASHR 188 (251)
Q Consensus 146 -~~i~~~a~n~ilIK~nqiGtlte~l~~~~~a~~~g~~~ivs~r 188 (251)
+++.....-.+.+|++- -+++..++++.|.+.|..-++...
T Consensus 174 ~~~Vk~~~~iPv~vKLsP--n~t~i~~ia~aa~~~Gadgi~liN 215 (385)
T PLN02495 174 CGWINAKATVPVWAKMTP--NITDITQPARVALKSGCEGVAAIN 215 (385)
T ss_pred HHHHHHhhcCceEEEeCC--ChhhHHHHHHHHHHhCCCEEEEec
Confidence 33433344679999873 566777888889999988877765
No 133
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=67.75 E-value=46 Score=34.38 Aligned_cols=114 Identities=11% Similarity=0.168 Sum_probs=79.7
Q ss_pred ccChhhHHHHHHHhhhcCCce-eecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeeccc
Q 040341 84 KVSGDGLKNVYRSFISDHPIV-SIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQ 162 (251)
Q Consensus 84 ~~s~~elid~~~~l~~~ypI~-~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nq 162 (251)
.+++.++...|.+. ----|. .-|..|-.-+++.+....+.+ .+||.--| |+.++..|..+-..| +++|||=..=
T Consensus 69 ~~d~~~~a~~y~~~-GA~aiSVlTe~~~F~Gs~~~l~~vr~~v--~~PvLrKD-FIid~~QI~ea~~~G-ADavLLI~~~ 143 (695)
T PRK13802 69 IPDPAALAREYEQG-GASAISVLTEGRRFLGSLDDFDKVRAAV--HIPVLRKD-FIVTDYQIWEARAHG-ADLVLLIVAA 143 (695)
T ss_pred CCCHHHHHHHHHHc-CCcEEEEecCcCcCCCCHHHHHHHHHhC--CCCEEecc-ccCCHHHHHHHHHcC-CCEeehhHhh
Confidence 35677777766652 111132 336777789999999999988 78999888 899999999987765 5666665443
Q ss_pred cccHHHHHHHHHHHHHcCCcEEEecCCCCCCchhHhhhhhhcccCc
Q 040341 163 IGSVTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLATGQ 208 (251)
Q Consensus 163 iGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d~~iadLAva~~~~~ 208 (251)
.+ -.+.-+.+++|++.|+.++|-.++.+- .+.|+..++..
T Consensus 144 L~-~~~l~~l~~~a~~lGme~LvEvh~~~e-----l~~a~~~ga~i 183 (695)
T PRK13802 144 LD-DAQLKHLLDLAHELGMTVLVETHTREE-----IERAIAAGAKV 183 (695)
T ss_pred cC-HHHHHHHHHHHHHcCCeEEEEeCCHHH-----HHHHHhCCCCE
Confidence 32 336778889999999999999875543 34444444433
No 134
>PRK05926 hypothetical protein; Provisional
Probab=67.33 E-value=76 Score=30.05 Aligned_cols=125 Identities=18% Similarity=0.095 Sum_probs=65.0
Q ss_pred CccChhhHHHHHHHhhhcCCc--eeecCCCCcc-cHHHHHHHHhhhCC---ceEEE---cccc-------cccCHHHHHH
Q 040341 83 QKVSGDGLKNVYRSFISDHPI--VSIEDPFDQD-DWEHHAELTGKIGR---HVQIV---GDDL-------LVTNPKRVEK 146 (251)
Q Consensus 83 ~~~s~~elid~~~~l~~~ypI--~~IEDP~~e~-D~~~~~~l~~~lg~---~~~iv---gDdl-------~vtn~~~i~~ 146 (251)
-.+|++|+++..++. . .++ ++|-.+.+++ +++-..++-+.+.. .+.++ +.+. -.+..+.+++
T Consensus 97 ~~ls~eeI~~~a~~a-~-~G~~ei~iv~G~~p~~~~e~~~e~i~~Ik~~~p~i~i~a~s~~Ei~~~~~~~~~~~~e~l~~ 174 (370)
T PRK05926 97 WFYTPDQLVQSIKEN-P-SPITETHIVAGCFPSCNLAYYEELFSKIKQNFPDLHIKALTAIEYAYLSKLDNLPVKEVLQT 174 (370)
T ss_pred ccCCHHHHHHHHHHH-h-cCCCEEEEEeCcCCCCCHHHHHHHHHHHHHhCCCeeEEECCHHHHHHHHhhcCCCHHHHHHH
Confidence 356899999988774 3 443 3333344433 55555555444432 35454 2221 0122333444
Q ss_pred HHhccCccee-----------E--eeccccccHHHHHHHHHHHHHcCCcE----EEecCCCCCCchhHhhhhhhcccCcc
Q 040341 147 AIKEKTCNAL-----------L--LKVNQIGSVTESIEAVKMSKRAGWGV----MASHRSGETEDTFIADLSVGLATGQI 209 (251)
Q Consensus 147 ~i~~~a~n~i-----------l--IK~nqiGtlte~l~~~~~a~~~g~~~----ivs~rsgEt~d~~iadLAva~~~~~i 209 (251)
.-+.|..... . +.|+.. |.-+-+++++.|++.|+.+ |+|| |||....+ |.+..++-=|.
T Consensus 175 LkeAGl~~~~g~GaEi~~e~~r~~~~p~~~-t~~e~l~~i~~a~~~Gi~~~sgmi~G~--gEt~edrv-~~l~~Lr~Lq~ 250 (370)
T PRK05926 175 LKIAGLDSIPGGGAEILVDEIRETLAPGRL-SSQGFLEIHKTAHSLGIPSNATMLCYH--RETPEDIV-THMSKLRALQD 250 (370)
T ss_pred HHHcCcCccCCCCchhcCHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCcccCceEEeC--CCCHHHHH-HHHHHHHhcCC
Confidence 3333322111 1 445444 4467899999999999988 4445 78855433 33334444444
Q ss_pred ccCC
Q 040341 210 KTGA 213 (251)
Q Consensus 210 k~G~ 213 (251)
++|+
T Consensus 251 ~t~g 254 (370)
T PRK05926 251 KTSG 254 (370)
T ss_pred ccCC
Confidence 4443
No 135
>PF02896 PEP-utilizers_C: PEP-utilising enzyme, TIM barrel domain; InterPro: IPR000121 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. The sequence around that residue is highly conserved. This domain is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus and the PEP-utilizing enzyme mobile domain.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2HRO_A 2OLS_A 2DIK_A 2R82_A 1JDE_A 1DIK_A 1GGO_A 1KBL_A 1KC7_A 2BG5_B ....
Probab=67.14 E-value=29 Score=31.88 Aligned_cols=132 Identities=14% Similarity=0.293 Sum_probs=77.8
Q ss_pred ccCCCCCcHHHH---HHHHHH---HHhcCCc--cceeeeeeh--hhhcccccCCcce--eecCCCCCCCCCCccChhhHH
Q 040341 24 FAPNIQESYEGF---ELLKTA---IAKGGYI--GKIVIGMDV--AASEFYDSKDKTY--DLNFKEENNDGSQKVSGDGLK 91 (251)
Q Consensus 24 fap~~~~~eeal---~~i~~A---i~~aGy~--~kI~iglD~--Aase~~~~~~g~Y--~l~~~~~~~d~~~~~s~~eli 91 (251)
..|.+.+.+|.. +++.++ +.+.|.. .++.+|+=+ .+.-+.-+ .+ .++|. +.-+.||+
T Consensus 141 m~PmV~~~~E~~~~~~~l~~~~~~L~~~g~~~~~~~~vG~MiEvPsaal~~~---~~~~~~DF~--------SIGtNDLt 209 (293)
T PF02896_consen 141 MFPMVSTVEEVREAKEILEEVKEELREEGIPFDPDLPVGIMIEVPSAALMAD---EFAKEVDFF--------SIGTNDLT 209 (293)
T ss_dssp EESS--SHHHHHHHHHHHHHHHHHHHHHTCTTGTT-EEEEEE-SHHHHHTHH---HHHTTSSEE--------EEEHHHHH
T ss_pred EecCCCcHHHHHHHHHHHHHHHHHHHHhccCccccceEEEEechhHHHHHHH---HHHHHCCEE--------EEChhHHH
Confidence 578888877654 444444 3233433 357777554 22222111 11 13332 35577999
Q ss_pred HHHHHhhhcC-C-ceeecCCCCcccHHHHHHHH---hhhCCceEEEcccccccCHHHHHHHHhccCcceeEeeccccccH
Q 040341 92 NVYRSFISDH-P-IVSIEDPFDQDDWEHHAELT---GKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSV 166 (251)
Q Consensus 92 d~~~~l~~~y-p-I~~IEDP~~e~D~~~~~~l~---~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqiGtl 166 (251)
.|... +|+- + +...-||+++-.+..-+.+. ++.|..+.|||+- ..+|..+...+..| .+.+-+.|..|..+
T Consensus 210 Qy~la-~DR~n~~v~~~~d~~~Pavl~li~~vi~~a~~~g~~vsvCGe~--a~~p~~~~~Ll~lG-i~~lSv~p~~i~~v 285 (293)
T PF02896_consen 210 QYTLA-ADRDNARVAYLYDPLHPAVLRLIKQVIDAAHKAGKPVSVCGEM--ASDPEAIPLLLGLG-IRSLSVSPDSIPRV 285 (293)
T ss_dssp HHHHT-S-TTCCTCGGGS-TTSHHHHHHHHHHHHHHHHTT-EEEEESGG--GGSHHHHHHHHHHT--SEEEE-GGGHHHH
T ss_pred HHHhh-cCCCCcchhhhcCcchHHHHHHHHHHHHHHhhcCcEEEEecCC--CCCHHHHHHHHHcC-CCEEEECHHHHHHH
Confidence 98887 4543 3 56789999998888777774 3346789999994 67999999888775 55677788877666
Q ss_pred HHHH
Q 040341 167 TESI 170 (251)
Q Consensus 167 te~l 170 (251)
..++
T Consensus 286 k~~i 289 (293)
T PF02896_consen 286 KKAI 289 (293)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 136
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=66.79 E-value=1.5e+02 Score=29.96 Aligned_cols=129 Identities=17% Similarity=0.210 Sum_probs=79.4
Q ss_pred CccChhhHHHHHHHhhhcCCceeecCC-----------CCcccHHHHHHHHhhhCC-ceEEE--cccc--cccC-----H
Q 040341 83 QKVSGDGLKNVYRSFISDHPIVSIEDP-----------FDQDDWEHHAELTGKIGR-HVQIV--GDDL--LVTN-----P 141 (251)
Q Consensus 83 ~~~s~~elid~~~~l~~~ypI~~IEDP-----------~~e~D~~~~~~l~~~lg~-~~~iv--gDdl--~vtn-----~ 141 (251)
..++.+|++.+... +++.++-+||=. +.+++|+..+.+.+...+ +++.. |=.+ +... .
T Consensus 16 ~~~~t~dkl~ia~~-L~~~Gv~~IE~~GGatfd~~~~f~~e~~~e~l~~l~~~~~~~~l~~L~Rg~N~~G~~~ypddvv~ 94 (582)
T TIGR01108 16 TRMRTEDMLPIAEK-LDDVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKALPNTPLQMLLRGQNLLGYRHYADDVVE 94 (582)
T ss_pred ccCCHHHHHHHHHH-HHHcCCCEEEecCCcccccccccCCCCHHHHHHHHHHhCCCCEEEEEEccccccccccCchhhHH
Confidence 36889999997776 588899999985 678999999999876532 23322 1110 0011 2
Q ss_pred HHHHHHHhccCcce-eEeeccccccHHHHHHHHHHHHHcCCcEEEe--c-CCCCCCchhHhhhh---hhcccCccccCCC
Q 040341 142 KRVEKAIKEKTCNA-LLLKVNQIGSVTESIEAVKMSKRAGWGVMAS--H-RSGETEDTFIADLS---VGLATGQIKTGAP 214 (251)
Q Consensus 142 ~~i~~~i~~~a~n~-ilIK~nqiGtlte~l~~~~~a~~~g~~~ivs--~-rsgEt~d~~iadLA---va~~~~~ik~G~~ 214 (251)
..++++++.+.--. +...+|.+ .....+++.|+++|..+.++ . .+.-....++.+++ +..++..|-.-+.
T Consensus 95 ~~v~~a~~~Gvd~irif~~lnd~---~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~~Gad~I~i~Dt 171 (582)
T TIGR01108 95 RFVKKAVENGMDVFRIFDALNDP---RNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEELLEMGVDSICIKDM 171 (582)
T ss_pred HHHHHHHHCCCCEEEEEEecCcH---HHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEECCC
Confidence 34566665543211 23345654 67788889999999988754 2 12223456666655 5567777754444
Q ss_pred C
Q 040341 215 C 215 (251)
Q Consensus 215 ~ 215 (251)
.
T Consensus 172 ~ 172 (582)
T TIGR01108 172 A 172 (582)
T ss_pred C
Confidence 3
No 137
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=66.59 E-value=50 Score=27.82 Aligned_cols=110 Identities=16% Similarity=0.160 Sum_probs=70.5
Q ss_pred cChhhHHHHHHHhhhcCCceeecCCCCccc-HHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeecccc
Q 040341 85 VSGDGLKNVYRSFISDHPIVSIEDPFDQDD-WEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQI 163 (251)
Q Consensus 85 ~s~~elid~~~~l~~~ypI~~IEDP~~e~D-~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqi 163 (251)
.+++++.+....+ -+.++-.||=.+...+ .+..+.+.++.+ .+.|-+. ++.+.++++.++..++ +.+. -|+
T Consensus 13 ~~~~~~~~~~~~l-~~~G~~~vev~~~~~~~~~~i~~l~~~~~-~~~iGag--~v~~~~~~~~a~~~Ga-~~i~-~p~-- 84 (190)
T cd00452 13 DDAEDALALAEAL-IEGGIRAIEITLRTPGALEAIRALRKEFP-EALIGAG--TVLTPEQADAAIAAGA-QFIV-SPG-- 84 (190)
T ss_pred CCHHHHHHHHHHH-HHCCCCEEEEeCCChhHHHHHHHHHHHCC-CCEEEEE--eCCCHHHHHHHHHcCC-CEEE-cCC--
Confidence 4678888877775 4556666765555433 344556666653 3433333 5788999999988765 4332 122
Q ss_pred ccHHHHHHHHHHHHHcCCcEEEecCCCCCCchhHhhhhhhcccCcccc
Q 040341 164 GSVTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLATGQIKT 211 (251)
Q Consensus 164 Gtlte~l~~~~~a~~~g~~~ivs~rsgEt~d~~iadLAva~~~~~ik~ 211 (251)
+. .++++.++.+|..+|++..+-+- +--|...++.+++.
T Consensus 85 -~~---~~~~~~~~~~~~~~i~gv~t~~e-----~~~A~~~Gad~i~~ 123 (190)
T cd00452 85 -LD---PEVVKAANRAGIPLLPGVATPTE-----IMQALELGADIVKL 123 (190)
T ss_pred -CC---HHHHHHHHHcCCcEECCcCCHHH-----HHHHHHCCCCEEEE
Confidence 22 36777788899999998873322 45566678888887
No 138
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=66.43 E-value=91 Score=30.39 Aligned_cols=136 Identities=13% Similarity=0.164 Sum_probs=83.0
Q ss_pred CccChhhHHHHHHHhhhcCCceeecCC-----------CCcccHHHHHHHHhhhCCceEEE---------cccccc--cC
Q 040341 83 QKVSGDGLKNVYRSFISDHPIVSIEDP-----------FDQDDWEHHAELTGKIGRHVQIV---------GDDLLV--TN 140 (251)
Q Consensus 83 ~~~s~~elid~~~~l~~~ypI~~IEDP-----------~~e~D~~~~~~l~~~lg~~~~iv---------gDdl~v--tn 140 (251)
..++.+|++..... +++.++-+||=- +.+++|+..+.+.+.+. ++.+. |-.-+- ..
T Consensus 21 ~~~~t~dkl~ia~~-Ld~~Gv~~IE~~ggatf~~~~~f~~e~p~e~l~~l~~~~~-~~~l~~l~r~~N~~G~~~~pddvv 98 (448)
T PRK12331 21 TRMTTEEMLPILEK-LDNAGYHSLEMWGGATFDACLRFLNEDPWERLRKIRKAVK-KTKLQMLLRGQNLLGYRNYADDVV 98 (448)
T ss_pred cccCHHHHHHHHHH-HHHcCCCEEEecCCccchhhhccCCCCHHHHHHHHHHhCC-CCEEEEEeccccccccccCchhhH
Confidence 46899999997777 588899999986 77899999999987753 34432 110000 01
Q ss_pred HHHHHHHHhccCcce-eEeeccccccHHHHHHHHHHHHHcCCcEE--EecCC-CCCCchhHhhhh---hhcccCccccCC
Q 040341 141 PKRVEKAIKEKTCNA-LLLKVNQIGSVTESIEAVKMSKRAGWGVM--ASHRS-GETEDTFIADLS---VGLATGQIKTGA 213 (251)
Q Consensus 141 ~~~i~~~i~~~a~n~-ilIK~nqiGtlte~l~~~~~a~~~g~~~i--vs~rs-gEt~d~~iadLA---va~~~~~ik~G~ 213 (251)
.++++++++.+.--. +.+.+|.+ ....++++.|+++|..+. ++... ..+...++.++| +..++..|-.-+
T Consensus 99 ~~~v~~A~~~Gvd~irif~~lnd~---~n~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~Gad~I~i~D 175 (448)
T PRK12331 99 ESFVQKSVENGIDIIRIFDALNDV---RNLETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEMGADSICIKD 175 (448)
T ss_pred HHHHHHHHHCCCCEEEEEEecCcH---HHHHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 355677776543321 33445654 356678899999998753 34422 224455555554 555666665554
Q ss_pred CCc---hhHHHHh
Q 040341 214 PCR---SERLAKY 223 (251)
Q Consensus 214 ~~r---~Er~aKy 223 (251)
..+ .+++..+
T Consensus 176 t~G~l~P~~v~~l 188 (448)
T PRK12331 176 MAGILTPYVAYEL 188 (448)
T ss_pred CCCCCCHHHHHHH
Confidence 443 4554443
No 139
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=66.22 E-value=22 Score=35.99 Aligned_cols=107 Identities=13% Similarity=0.141 Sum_probs=76.9
Q ss_pred ChhhHHHHHHHhhhcCC--ceeecCCCCcccHHHHHHHHhhh---CCceEEEcccccccCHHHHHHHHhccCcceeEeec
Q 040341 86 SGDGLKNVYRSFISDHP--IVSIEDPFDQDDWEHHAELTGKI---GRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKV 160 (251)
Q Consensus 86 s~~elid~~~~l~~~yp--I~~IEDP~~e~D~~~~~~l~~~l---g~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~ 160 (251)
+.+.-++...+| .+-+ ||=+==| ..+|-++...+.+++ |-.+|+|.|-- .+++..-.+++. +..+=|-|
T Consensus 39 D~~atv~Qi~~l-~~aGceiVRvtv~-~~~~a~~l~~I~~~l~~~G~~iPLVADIH--F~~~~A~~a~~~--v~kiRINP 112 (611)
T PRK02048 39 DTEACVAQAKRI-IDAGGEYVRLTTQ-GVREAENLMNINIGLRSQGYMVPLVADVH--FNPKVADVAAQY--AEKVRINP 112 (611)
T ss_pred cHHHHHHHHHHH-HHcCCCEEEEcCC-CHHHHHhHHHHHHHHhhcCCCCCEEEecC--CCcHHHHHHHHh--hCCEEECC
Confidence 344445556664 3334 6654433 346778888888775 55799999964 477777777764 88899999
Q ss_pred cccccH----------------------HHHHHHHHHHHHcCCcEEEecCCCCCCchhHh
Q 040341 161 NQIGSV----------------------TESIEAVKMSKRAGWGVMASHRSGETEDTFIA 198 (251)
Q Consensus 161 nqiGtl----------------------te~l~~~~~a~~~g~~~ivs~rsgEt~d~~ia 198 (251)
+.+|.- -....+++.|+++|..+-||..+|--++.+..
T Consensus 113 GN~~~~~k~f~~~~Ytdeey~~el~~i~e~~~~~v~~ak~~~~~iRIGvN~GSL~~~i~~ 172 (611)
T PRK02048 113 GNYVDPGRTFKKLEYTDEEYAQEIQKIRDRFVPFLNICKENHTAIRIGVNHGSLSDRIMS 172 (611)
T ss_pred CcCCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEecCCcCchHHHHH
Confidence 999883 55667899999999999999988876554443
No 140
>PRK07360 FO synthase subunit 2; Reviewed
Probab=65.83 E-value=1.1e+02 Score=28.83 Aligned_cols=112 Identities=15% Similarity=0.099 Sum_probs=62.1
Q ss_pred ccChhhHHHHHHHhhhcCCc-----eeecCCCCcccHHHHHHHHhhhC---CceEEEcc----------cccccCHHHHH
Q 040341 84 KVSGDGLKNVYRSFISDHPI-----VSIEDPFDQDDWEHHAELTGKIG---RHVQIVGD----------DLLVTNPKRVE 145 (251)
Q Consensus 84 ~~s~~elid~~~~l~~~ypI-----~~IEDP~~e~D~~~~~~l~~~lg---~~~~ivgD----------dl~vtn~~~i~ 145 (251)
.+|.+|+++..+. ..++++ ++=++|... +++-+.++-+.+. ..+.|++= .+-.+..+.++
T Consensus 90 ~ls~eeI~~~a~~-a~~~G~~~i~l~~G~~p~~~-~~e~~~~~i~~ik~~~~~i~i~a~s~~ei~~~~~~~G~~~~e~l~ 167 (371)
T PRK07360 90 WLTIAEILEKAAE-AVKRGATEVCIQGGLHPAAD-SLEFYLEILEAIKEEFPDIHLHAFSPMEVYFAAREDGLSYEEVLK 167 (371)
T ss_pred eCCHHHHHHHHHH-HHhCCCCEEEEccCCCCCCC-cHHHHHHHHHHHHHhCCCcceeeCCHHHHHHHHhhcCCCHHHHHH
Confidence 5789999887777 455553 232666543 3444444444442 23566530 00112223334
Q ss_pred HHHhccCcce------e-------EeeccccccHHHHHHHHHHHHHcCCcE----EEecCCCCCCchhHhhh
Q 040341 146 KAIKEKTCNA------L-------LLKVNQIGSVTESIEAVKMSKRAGWGV----MASHRSGETEDTFIADL 200 (251)
Q Consensus 146 ~~i~~~a~n~------i-------lIK~nqiGtlte~l~~~~~a~~~g~~~----ivs~rsgEt~d~~iadL 200 (251)
+..+.|.... + .+.|+.+ +..+-+++++.|++.|+.+ ++|+ |||.+..+-||
T Consensus 168 ~LkeAGld~~~~t~~e~l~~~vr~~i~p~~~-s~~~~l~~i~~a~~~Gl~~~sg~i~G~--gEt~edrv~~l 236 (371)
T PRK07360 168 ALKDAGLDSMPGTAAEILVDEVRRIICPEKI-KTAEWIEIVKTAHKLGLPTTSTMMYGH--VETPEHRIDHL 236 (371)
T ss_pred HHHHcCCCcCCCcchhhccHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCCceeeEEeeC--CCCHHHHHHHH
Confidence 3333222111 1 1345544 5567799999999999977 7776 89876554443
No 141
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=65.79 E-value=50 Score=30.65 Aligned_cols=103 Identities=13% Similarity=0.116 Sum_probs=67.6
Q ss_pred ChhhHHHHHHHhh-----hcCCceeecCCCCcccHHHHHHHHhhhCCceEEE-cccccccCHHHHHHHHhccCcceeEee
Q 040341 86 SGDGLKNVYRSFI-----SDHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIV-GDDLLVTNPKRVEKAIKEKTCNALLLK 159 (251)
Q Consensus 86 s~~elid~~~~l~-----~~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~iv-gDdl~vtn~~~i~~~i~~~a~n~ilIK 159 (251)
+..+.+......+ ..-.-+.+.+|-+...+..|..+.++.|-++..+ -|+-...+++.+++.+..+ ...+.+-
T Consensus 89 ~~t~~i~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~-t~lv~i~ 167 (401)
T PRK10874 89 GTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLVPWLMVAQQTGAKVVKLPLGADRLPDVDLLPELITPR-TRILALG 167 (401)
T ss_pred CHHHHHHHHHHHhhhccCCCcCEEEECCcchHHHHHHHHHHHHHhCCEEEEEecCCCCcCCHHHHHHhcCcC-cEEEEEe
Confidence 3456666554433 2223566667766666778988887776554443 2332445789999988543 3444442
Q ss_pred -c-cccccHHHHHHHHHHHHHcCCcEEEecCC
Q 040341 160 -V-NQIGSVTESIEAVKMSKRAGWGVMASHRS 189 (251)
Q Consensus 160 -~-nqiGtlte~l~~~~~a~~~g~~~ivs~rs 189 (251)
| |-.|.+...-+++++|+++|+.++|-.-.
T Consensus 168 ~~~n~tG~~~~~~~i~~l~~~~g~~~ivD~a~ 199 (401)
T PRK10874 168 QMSNVTGGCPDLARAITLAHQAGMVVMVDGAQ 199 (401)
T ss_pred CCcccccCcCCHHHHHHHHHHcCCEEEEECCc
Confidence 2 56788888889999999999988876654
No 142
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=65.57 E-value=56 Score=28.05 Aligned_cols=64 Identities=6% Similarity=0.039 Sum_probs=38.5
Q ss_pred ChhhHHHHHHHhhhcCCceeec--CCC-Cc--ccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcc
Q 040341 86 SGDGLKNVYRSFISDHPIVSIE--DPF-DQ--DDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCN 154 (251)
Q Consensus 86 s~~elid~~~~l~~~ypI~~IE--DP~-~e--~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n 154 (251)
++.+++..|.+. ...-++|- |.. .. .+++...++.+.+ .+||.-+. -|++.+++++..+.++..
T Consensus 31 ~~~~~a~~~~~~--g~~~i~v~dld~~~~g~~~~~~~i~~i~~~~--~~pv~~~G-GI~~~ed~~~~~~~Ga~~ 99 (233)
T PRK00748 31 DPVAQAKAWEDQ--GAKWLHLVDLDGAKAGKPVNLELIEAIVKAV--DIPVQVGG-GIRSLETVEALLDAGVSR 99 (233)
T ss_pred CHHHHHHHHHHc--CCCEEEEEeCCccccCCcccHHHHHHHHHHC--CCCEEEcC-CcCCHHHHHHHHHcCCCE
Confidence 555655555541 12223332 354 23 6778888887777 45555455 578999998888876443
No 143
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=65.33 E-value=33 Score=28.58 Aligned_cols=19 Identities=16% Similarity=0.125 Sum_probs=11.3
Q ss_pred CCcHHHHHHHHHHHHhcCC
Q 040341 29 QESYEGFELLKTAIAKGGY 47 (251)
Q Consensus 29 ~~~eeal~~i~~Ai~~aGy 47 (251)
.+.+++++.+.+.+...|+
T Consensus 17 ~~~e~~v~~a~~~~~~~g~ 35 (176)
T PF06506_consen 17 ASLEEAVEEARQLLESEGA 35 (176)
T ss_dssp --HHHHHHHHHHHHTTTT-
T ss_pred ecHHHHHHHHHHhhHhcCC
Confidence 4568888888887445554
No 144
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=65.31 E-value=32 Score=31.68 Aligned_cols=35 Identities=14% Similarity=0.134 Sum_probs=27.9
Q ss_pred cHHHHHHHHHHHHHcCCcE----EEecCCCCCCchhHhhhh
Q 040341 165 SVTESIEAVKMSKRAGWGV----MASHRSGETEDTFIADLS 201 (251)
Q Consensus 165 tlte~l~~~~~a~~~g~~~----ivs~rsgEt~d~~iadLA 201 (251)
+..+.+++++.|++.|+.+ ++|+ |||..+++.+|-
T Consensus 151 ~~~~~l~~i~~a~~~Gi~~~~~~i~G~--gEt~ed~~~~l~ 189 (336)
T PRK06245 151 DPELRLETIENAGKLKIPFTTGILIGI--GETWEDRAESLE 189 (336)
T ss_pred CHHHHHHHHHHHHHcCCceeeeeeeEC--CCCHHHHHHHHH
Confidence 4788899999999999965 6676 999888766543
No 145
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=64.74 E-value=61 Score=32.15 Aligned_cols=142 Identities=10% Similarity=0.212 Sum_probs=84.1
Q ss_pred CCCccChhhHHHHHHHhhhcCCceeecCCCC---cccHHHHHHHHhhhCC--------ceEEEcccccccCHHHHHHHHh
Q 040341 81 GSQKVSGDGLKNVYRSFISDHPIVSIEDPFD---QDDWEHHAELTGKIGR--------HVQIVGDDLLVTNPKRVEKAIK 149 (251)
Q Consensus 81 ~~~~~s~~elid~~~~l~~~ypI~~IEDP~~---e~D~~~~~~l~~~lg~--------~~~ivgDdl~vtn~~~i~~~i~ 149 (251)
++..+|.+|-+++.+. +++.++-.||=.|. ++|++..+.+.+..+. ...|++ +.-...++++.+++
T Consensus 99 ~gv~fs~eeKi~Ia~~-L~~~GVd~IEvG~Pa~s~~e~e~i~~i~~~~~~~~~~~~~l~~~i~a--~~R~~~~dId~a~~ 175 (503)
T PLN03228 99 PGGSLTPPQKLEIARQ-LAKLRVDIMEVGFPGSSEEEFEAVKTIAKTVGNEVDEETGYVPVICG--IARCKKRDIEAAWE 175 (503)
T ss_pred CCCCCCHHHHHHHHHH-HHHcCCCEEEEeCCCCCHHHHHHHHHHHHhcccccccccccceEEee--ecccCHhhHHHHHH
Confidence 3457999998887777 58889888988764 6778877777655421 122221 11234556777665
Q ss_pred cc---CcceeE--eecc-----------ccccHHHHHHHHHHHHHcCCc-EEEec-CCCCCCchhHhhhh---hhcccCc
Q 040341 150 EK---TCNALL--LKVN-----------QIGSVTESIEAVKMSKRAGWG-VMASH-RSGETEDTFIADLS---VGLATGQ 208 (251)
Q Consensus 150 ~~---a~n~il--IK~n-----------qiGtlte~l~~~~~a~~~g~~-~ivs~-rsgEt~d~~iadLA---va~~~~~ 208 (251)
-. ....+. +..+ +-..+..+.+++++|++.|.. +.+++ ..+.++..|+.+++ ...++..
T Consensus 176 a~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~EDa~Rtd~efl~~~~~~a~~~Gad~ 255 (503)
T PLN03228 176 ALKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGCEDGGRSDKEFLCKILGEAIKAGATS 255 (503)
T ss_pred hhcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEeccccccccCHHHHHHHHHHHHhcCCCE
Confidence 31 111222 2221 122345556788899999985 77777 55667777777665 3345666
Q ss_pred cccCC---CCchhHHHHhhH
Q 040341 209 IKTGA---PCRSERLAKYNQ 225 (251)
Q Consensus 209 ik~G~---~~r~Er~aKyN~ 225 (251)
|...+ ....+++..+=+
T Consensus 256 I~l~DTvG~~tP~~v~~lV~ 275 (503)
T PLN03228 256 VGIADTVGINMPHEFGELVT 275 (503)
T ss_pred EEEecCCCCCCHHHHHHHHH
Confidence 64443 334455444333
No 146
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=64.51 E-value=29 Score=32.08 Aligned_cols=42 Identities=10% Similarity=0.468 Sum_probs=25.0
Q ss_pred cHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEe
Q 040341 114 DWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLL 158 (251)
Q Consensus 114 D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilI 158 (251)
||+.-+++.+.+ ++||+|.- -|++++++.+.++...|+.|.|
T Consensus 182 ~~~~i~~ik~~~--~iPVi~nG-dI~t~~da~~~l~~~g~DgVmi 223 (312)
T PRK10550 182 NWQAIGEIRQRL--TIPVIANG-EIWDWQSAQQCMAITGCDAVMI 223 (312)
T ss_pred cHHHHHHHHhhc--CCcEEEeC-CcCCHHHHHHHHhccCCCEEEE
Confidence 566666666665 45555544 3566666666666666665554
No 147
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=64.17 E-value=1.3e+02 Score=29.57 Aligned_cols=129 Identities=15% Similarity=0.162 Sum_probs=78.1
Q ss_pred ccChhhHHHHHHHhhhcCCceeecC----C-------CCcccHHHHHHHHhhhCCceEE----Ecccccc--cCHHH---
Q 040341 84 KVSGDGLKNVYRSFISDHPIVSIED----P-------FDQDDWEHHAELTGKIGRHVQI----VGDDLLV--TNPKR--- 143 (251)
Q Consensus 84 ~~s~~elid~~~~l~~~ypI~~IED----P-------~~e~D~~~~~~l~~~lg~~~~i----vgDdl~v--tn~~~--- 143 (251)
.++.+||...... +++-++-+||= - +.|++|+-...+.+.+.+ +++ -|-.+.- .-|++
T Consensus 31 r~~t~d~l~ia~~-ld~~G~~siE~wGGAtfd~~~rfl~edpwerlr~~r~~~~n-t~lqmLlRG~n~vgy~~ypddvv~ 108 (468)
T PRK12581 31 RLSIEDMLPVLTI-LDKIGYYSLECWGGATFDACIRFLNEDPWERLRTLKKGLPN-TRLQMLLRGQNLLGYRHYADDIVD 108 (468)
T ss_pred CCCHHHHHHHHHH-HHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCC-CceeeeeccccccCccCCcchHHH
Confidence 4889999887666 69989999986 2 569999999999988853 332 2322111 11344
Q ss_pred --HHHHHhccCcceeE-eeccccccHHHHHHHHHHHHHcCCcE--EEec-CCCCCCchhHhhhh---hhcccCccccCCC
Q 040341 144 --VEKAIKEKTCNALL-LKVNQIGSVTESIEAVKMSKRAGWGV--MASH-RSGETEDTFIADLS---VGLATGQIKTGAP 214 (251)
Q Consensus 144 --i~~~i~~~a~n~il-IK~nqiGtlte~l~~~~~a~~~g~~~--ivs~-rsgEt~d~~iadLA---va~~~~~ik~G~~ 214 (251)
++++.+.|.--.-+ =.+| -+.....+++.+++.|..+ .+++ .|.+....+.+++| +..++..|-+-+.
T Consensus 109 ~fv~~a~~~Gidi~Rifd~ln---d~~n~~~ai~~ak~~G~~~~~~i~yt~sp~~t~~y~~~~a~~l~~~Gad~I~IkDt 185 (468)
T PRK12581 109 KFISLSAQNGIDVFRIFDALN---DPRNIQQALRAVKKTGKEAQLCIAYTTSPVHTLNYYLSLVKELVEMGADSICIKDM 185 (468)
T ss_pred HHHHHHHHCCCCEEEEcccCC---CHHHHHHHHHHHHHcCCEEEEEEEEEeCCcCcHHHHHHHHHHHHHcCCCEEEECCC
Confidence 44554433221111 1234 4555666777889999884 5555 33444556665554 5667777766555
Q ss_pred Cch
Q 040341 215 CRS 217 (251)
Q Consensus 215 ~r~ 217 (251)
.+.
T Consensus 186 aG~ 188 (468)
T PRK12581 186 AGI 188 (468)
T ss_pred CCC
Confidence 443
No 148
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=63.97 E-value=49 Score=31.14 Aligned_cols=102 Identities=11% Similarity=0.186 Sum_probs=73.8
Q ss_pred ccChhhHHHHHHHhhhcCCc-eeecCCCCcccHHHHHHHHhh-hCCceEEEcccccccCHHHHHHHHhccCcceeEeecc
Q 040341 84 KVSGDGLKNVYRSFISDHPI-VSIEDPFDQDDWEHHAELTGK-IGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVN 161 (251)
Q Consensus 84 ~~s~~elid~~~~l~~~ypI-~~IEDP~~e~D~~~~~~l~~~-lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~n 161 (251)
.+++.++...|.+- -.--| |.-|..|-.-+++..+...+. + .+||.--| |+-++-.|..+-..| +++|||=..
T Consensus 138 ~~dp~~iA~~Ye~~-GA~aISVLTd~~~F~Gs~e~L~~vr~~~v--~lPvLrKD-FIID~yQI~eAr~~G-ADAVLLIaa 212 (338)
T PLN02460 138 NFDPVEIAQAYEKG-GAACLSVLTDEKYFQGSFENLEAIRNAGV--KCPLLCKE-FIVDAWQIYYARSKG-ADAILLIAA 212 (338)
T ss_pred CCCHHHHHHHHHhC-CCcEEEEecCcCcCCCCHHHHHHHHHcCC--CCCEeecc-ccCCHHHHHHHHHcC-CCcHHHHHH
Confidence 46777877777662 12113 233778888999999999887 7 78999999 899999999887665 456665433
Q ss_pred ccccHHHHHHHHHHHHHcCCcEEEecCCCC
Q 040341 162 QIGSVTESIEAVKMSKRAGWGVMASHRSGE 191 (251)
Q Consensus 162 qiGtlte~l~~~~~a~~~g~~~ivs~rsgE 191 (251)
=. +-.+..+.+++|++.|+.+.|-..+.+
T Consensus 213 iL-~~~~L~~l~~~A~~LGme~LVEVH~~~ 241 (338)
T PLN02460 213 VL-PDLDIKYMLKICKSLGMAALIEVHDER 241 (338)
T ss_pred hC-CHHHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 32 233577788899999999999876433
No 149
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=63.84 E-value=49 Score=28.88 Aligned_cols=101 Identities=9% Similarity=0.116 Sum_probs=57.3
Q ss_pred hhhHHHHHHHhhhcCCceeecCCCCcccHHHH-HHHHhhhCCceEEEcccccc-----cCHHHHHHHHhccCcceeEeec
Q 040341 87 GDGLKNVYRSFISDHPIVSIEDPFDQDDWEHH-AELTGKIGRHVQIVGDDLLV-----TNPKRVEKAIKEKTCNALLLKV 160 (251)
Q Consensus 87 ~~elid~~~~l~~~ypI~~IEDP~~e~D~~~~-~~l~~~lg~~~~ivgDdl~v-----tn~~~i~~~i~~~a~n~ilIK~ 160 (251)
++++.++..+..+.|.++.+. | .++.+ ....+.. .+.|++-.-.. -....++.+.+.+.+=-|+..+
T Consensus 68 ~~~~~~~~~~~~~~~d~v~v~-~----~~~~~~~~a~~~~--~vdIi~hp~~~~~~~~~~~~~~~~a~~~gv~lEIn~s~ 140 (237)
T PRK00912 68 PSKLRGLVGKFRKKVDVLAVH-G----GDEKVNRAACENP--RVDILSHPYTKRKDSGINHVLAKEAARNNVAIEFNLRD 140 (237)
T ss_pred HHHHHHHHHhccCcccEEEEe-C----CCHHHHHHHHccC--CCcEEeCccccCCCCCcCHHHHHHHHHCCeEEEEEchH
Confidence 344444444433456788766 2 22444 2333333 67777765322 1233445555544333333332
Q ss_pred c-------ccccHHHHHHHHHHHHHcCCcEEEecCCCCCCc
Q 040341 161 N-------QIGSVTESIEAVKMSKRAGWGVMASHRSGETED 194 (251)
Q Consensus 161 n-------qiGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d 194 (251)
- |.++++...+++++|++.|.++++|+..-.+.+
T Consensus 141 ~~~~~~~~r~~~~~~~~~~~~~~~~~g~piiisSdAh~~~~ 181 (237)
T PRK00912 141 ILKSRGGRRARTLSNFRDNLALARKYDFPLVLTSGAMSCYD 181 (237)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCcccc
Confidence 1 234577888999999999999999998666544
No 150
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=63.75 E-value=8.3 Score=35.51 Aligned_cols=77 Identities=26% Similarity=0.251 Sum_probs=51.3
Q ss_pred cChhhHHHHHHHhhhcCCce-eecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeecccc
Q 040341 85 VSGDGLKNVYRSFISDHPIV-SIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQI 163 (251)
Q Consensus 85 ~s~~elid~~~~l~~~ypI~-~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqi 163 (251)
.++..+ =.|..+....|.+ .+=++ --|+.+|.+|.++- .++|+|||. -| ++-.
T Consensus 186 ~~aS~~-YA~AAl~~g~~fvN~tP~~--~a~~P~l~ela~~~--gvpi~GdD~-KT--------------------~lAA 239 (295)
T PF07994_consen 186 ISASML-YAYAALEAGVPFVNGTPSN--IADDPALVELAEEK--GVPIAGDDG-KT--------------------PLAA 239 (295)
T ss_dssp HHHHHH-HHHHHHHTTEEEEE-SSST--TTTSHHHHHHHHHH--TEEEEESSB-S---------------------HHHH
T ss_pred CChHHH-HHHHHHHCCCCeEeccCcc--ccCCHHHHHHHHHc--CCCeecchH-hh--------------------hhhh
Confidence 455553 2344444445533 33333 33557999999998 799999994 33 7777
Q ss_pred ccHHHHHHHHHHHHHcCCcEEEec
Q 040341 164 GSVTESIEAVKMSKRAGWGVMASH 187 (251)
Q Consensus 164 Gtlte~l~~~~~a~~~g~~~ivs~ 187 (251)
+-+-+++..+++|++.|+.-+.+.
T Consensus 240 plvlDLirl~~la~r~g~~Gv~~~ 263 (295)
T PF07994_consen 240 PLVLDLIRLAKLALRRGMGGVQEW 263 (295)
T ss_dssp HHHHHHHHHHHHHHHTTS-EEHHH
T ss_pred HHHHHHHHHHHHHHHcCCCChhHH
Confidence 888999999999999888664443
No 151
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=62.56 E-value=31 Score=31.83 Aligned_cols=85 Identities=18% Similarity=0.184 Sum_probs=58.3
Q ss_pred CceeecCCCCcccHHHHHHHHhhhCCceEEE-cccccccCHHHHHHHHhccCcceeEee-ccccccHHHH-HHHHHHHHH
Q 040341 102 PIVSIEDPFDQDDWEHHAELTGKIGRHVQIV-GDDLLVTNPKRVEKAIKEKTCNALLLK-VNQIGSVTES-IEAVKMSKR 178 (251)
Q Consensus 102 pI~~IEDP~~e~D~~~~~~l~~~lg~~~~iv-gDdl~vtn~~~i~~~i~~~a~n~ilIK-~nqiGtlte~-l~~~~~a~~ 178 (251)
..|.+-+|.+..-...|..+.++.|.++..+ .++-...+++.+++++..+ ..+++|- ||-.|.+.+. -++.++|++
T Consensus 109 d~Vl~~~~~h~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~-t~~viv~~~~~~G~~~~~l~~i~~la~~ 187 (398)
T cd00613 109 NKVLVPDSAHPTNPAVARTRGEPLGIEVVEVPSDEGGTVDLEALKEEVSEE-VAALMVQYPNTLGVFEDLIKEIADIAHS 187 (398)
T ss_pred CEEEEcCccCcchHHHHHHhcccCCcEEEEeccCCCCCcCHHHHHHhcCCC-eEEEEEECCCCCceecchHHHHHHHHHh
Confidence 3788899999888888887765544444433 2222344788999888654 3445443 5655777665 677889999
Q ss_pred cCCcEEEec
Q 040341 179 AGWGVMASH 187 (251)
Q Consensus 179 ~g~~~ivs~ 187 (251)
+|+.+++-.
T Consensus 188 ~g~~livD~ 196 (398)
T cd00613 188 AGALVYVDG 196 (398)
T ss_pred cCCEEEEEe
Confidence 999888853
No 152
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=62.52 E-value=27 Score=33.14 Aligned_cols=84 Identities=18% Similarity=0.165 Sum_probs=59.4
Q ss_pred CceeecCCCCcccHHHHHHHHhhhCCceEEE-cccccccCHHHHHHHHhccCcceeEeeccccccHHHHHHHHHHHHHcC
Q 040341 102 PIVSIEDPFDQDDWEHHAELTGKIGRHVQIV-GDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAG 180 (251)
Q Consensus 102 pI~~IEDP~~e~D~~~~~~l~~~lg~~~~iv-gDdl~vtn~~~i~~~i~~~a~n~ilIK~nqiGtlte~l~~~~~a~~~g 180 (251)
+-+.+-+|.+..-...|..+.+..|-++..+ .|+- .-+++.+++++..+..=.++--||-.|++-+.-++.++|+++|
T Consensus 155 ~~Vlv~~~~~~~~~~~~~~~~~~~G~~~~~v~~~~~-~~d~~~l~~~i~~~t~~v~l~~pn~tG~v~~l~~I~~~a~~~~ 233 (447)
T PRK00451 155 KKVLVSGAVHPEYREVLKTYLKGQGIEVVEVPYEDG-VTDLEALEAAVDDDTAAVVVQYPNFFGVIEDLEEIAEIAHAGG 233 (447)
T ss_pred CEEEEeCccCHHHHHHHHHHHHhCCcEEEEecCCCC-CCCHHHHHHhcCCCeEEEEEECCCCCCeeCCHHHHHHHHHHCC
Confidence 4566677888777777777766666555444 2332 4478999988865533223335788999988888999999999
Q ss_pred CcEEEe
Q 040341 181 WGVMAS 186 (251)
Q Consensus 181 ~~~ivs 186 (251)
..++|+
T Consensus 234 ~~~iv~ 239 (447)
T PRK00451 234 ALFIVG 239 (447)
T ss_pred CEEEEE
Confidence 988873
No 153
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=62.09 E-value=95 Score=26.09 Aligned_cols=120 Identities=14% Similarity=0.060 Sum_probs=69.7
Q ss_pred cChhhHHHHHHHhhhcCCceeecCC--CC-cccHHHHHHHHhhhCCceEEEcccccccCHH--HHHHHHhccCcceeEee
Q 040341 85 VSGDGLKNVYRSFISDHPIVSIEDP--FD-QDDWEHHAELTGKIGRHVQIVGDDLLVTNPK--RVEKAIKEKTCNALLLK 159 (251)
Q Consensus 85 ~s~~elid~~~~l~~~ypI~~IEDP--~~-e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~--~i~~~i~~~a~n~ilIK 159 (251)
.+.++.......+ +..+..||.+ +. +.-.+....|.+..+ ...+..| +-+.++. .++++.+.| ++.+.+-
T Consensus 9 ~~~~~a~~~~~~l--~~~v~~iev~~~l~~~~g~~~i~~l~~~~~-~~~i~~d-~k~~d~~~~~~~~~~~~G-ad~i~vh 83 (206)
T TIGR03128 9 LDIEEALELAEKV--ADYVDIIEIGTPLIKNEGIEAVKEMKEAFP-DRKVLAD-LKTMDAGEYEAEQAFAAG-ADIVTVL 83 (206)
T ss_pred CCHHHHHHHHHHc--ccCeeEEEeCCHHHHHhCHHHHHHHHHHCC-CCEEEEE-EeeccchHHHHHHHHHcC-CCEEEEe
Confidence 4566766666654 4568889985 43 223556666666643 3445554 3344665 567777665 5666655
Q ss_pred ccccccHHHHHHHHHHHHHcCCcEEEecCCCCCCchhHhhhhhhcccCccccC
Q 040341 160 VNQIGSVTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLATGQIKTG 212 (251)
Q Consensus 160 ~nqiGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d~~iadLAva~~~~~ik~G 212 (251)
.-- +.....++++.|+++|+.+++.-.+..|... -+-.+...++.++++.
T Consensus 84 ~~~--~~~~~~~~i~~~~~~g~~~~~~~~~~~t~~~-~~~~~~~~g~d~v~~~ 133 (206)
T TIGR03128 84 GVA--DDATIKGAVKAAKKHGKEVQVDLINVKDKVK-RAKELKELGADYIGVH 133 (206)
T ss_pred ccC--CHHHHHHHHHHHHHcCCEEEEEecCCCChHH-HHHHHHHcCCCEEEEc
Confidence 322 2223356778899999999987433333211 1223455577787764
No 154
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=61.92 E-value=1.1e+02 Score=28.81 Aligned_cols=149 Identities=9% Similarity=0.072 Sum_probs=82.4
Q ss_pred CCCcHHHHHHHHHHHHhc---CCcc-ceeeeeehhhhcccccCCcceeecCCCCCCCCCCcc--ChhhHHHHHHHhh-hc
Q 040341 28 IQESYEGFELLKTAIAKG---GYIG-KIVIGMDVAASEFYDSKDKTYDLNFKEENNDGSQKV--SGDGLKNVYRSFI-SD 100 (251)
Q Consensus 28 ~~~~eeal~~i~~Ai~~a---Gy~~-kI~iglD~Aase~~~~~~g~Y~l~~~~~~~d~~~~~--s~~elid~~~~l~-~~ 100 (251)
+..++.+.+.+.++++.. +|.+ .=...+--|..+++.. .|.+... | .+-.. -.++.+......+ +.
T Consensus 48 ~~~p~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~---~~g~~~~-~---~~I~it~G~~~al~~~~~~l~~~ 120 (409)
T PLN00143 48 FRTTNIAEDAIVEAVRSAKFNSYAPTGGILPARRAIADYLSN---DLPYQLS-P---DDVYLTLGCKHAAEIIIKVLARP 120 (409)
T ss_pred CCCCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHh---hcCCCCC-H---hhEEEecChHHHHHHHHHHHcCC
Confidence 667788889999988643 3642 1111122244445432 2222110 0 01111 2456666655543 33
Q ss_pred CCceeecCCCCcccHHHHHHHHhhhCCceEEE-c--ccccccCHHHHHHHHhccCcceeEeeccc-cc---cHHHHHHHH
Q 040341 101 HPIVSIEDPFDQDDWEHHAELTGKIGRHVQIV-G--DDLLVTNPKRVEKAIKEKTCNALLLKVNQ-IG---SVTESIEAV 173 (251)
Q Consensus 101 ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~iv-g--Ddl~vtn~~~i~~~i~~~a~n~ilIK~nq-iG---tlte~l~~~ 173 (251)
=.-+.+++|... .+..+.+..|.++.-+ . ++-+.-+++.++.++..+..-.++.-||. .| +..+..+++
T Consensus 121 gd~v~v~~P~y~----~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~nP~NPTG~~~s~~~~~~l~ 196 (409)
T PLN00143 121 EANILLPRPGFP----DVETYAIFHHLEIRHFDLLPEKGWEVDLDAVEAIADENTIAMVIINPGNPCGSVYSYEHLNKIA 196 (409)
T ss_pred CCEEEEcCCCCc----CHHHHHHHcCCEEEEEeccCCCCCcCCHHHHHHhcccCCEEEEEECCCCCCCCccCHHHHHHHH
Confidence 347899999853 2434444454343222 1 12244588999888766555566667753 34 445677888
Q ss_pred HHHHHcCCcEEEec
Q 040341 174 KMSKRAGWGVMASH 187 (251)
Q Consensus 174 ~~a~~~g~~~ivs~ 187 (251)
++|+++++.+++-.
T Consensus 197 ~~a~~~~~~ii~De 210 (409)
T PLN00143 197 ETARKLGILVIADE 210 (409)
T ss_pred HHHHHcCCeEEEEc
Confidence 99999998776543
No 155
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=61.64 E-value=57 Score=29.10 Aligned_cols=95 Identities=20% Similarity=0.268 Sum_probs=53.6
Q ss_pred ccChhhHHHHHHHhhhcCCceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeecccc
Q 040341 84 KVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQI 163 (251)
Q Consensus 84 ~~s~~elid~~~~l~~~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqi 163 (251)
.++.+++.+ +.+.+++.+|.++-.||++++.+-..++. + +-.-|-.-| ++|...|+...+. ...++|.-+-
T Consensus 52 el~~e~~~~-L~~~~~~~gi~f~stpfd~~s~d~l~~~~--~-~~~KIaS~d--l~n~~lL~~~A~t--gkPvIlSTG~- 122 (241)
T PF03102_consen 52 ELSEEQHKE-LFEYCKELGIDFFSTPFDEESVDFLEELG--V-PAYKIASGD--LTNLPLLEYIAKT--GKPVILSTGM- 122 (241)
T ss_dssp SS-HHHHHH-HHHHHHHTT-EEEEEE-SHHHHHHHHHHT----SEEEE-GGG--TT-HHHHHHHHTT---S-EEEE-TT-
T ss_pred cCCHHHHHH-HHHHHHHcCCEEEECCCCHHHHHHHHHcC--C-CEEEecccc--ccCHHHHHHHHHh--CCcEEEECCC-
Confidence 566777554 56668999999999999988766554442 1 124444554 5788888887663 4456666553
Q ss_pred ccHHHHHHHHHHH-HHcCCcEEEec
Q 040341 164 GSVTESIEAVKMS-KRAGWGVMASH 187 (251)
Q Consensus 164 Gtlte~l~~~~~a-~~~g~~~ivs~ 187 (251)
.|+.|.-++++.. +..+-.+++=|
T Consensus 123 stl~EI~~Av~~~~~~~~~~l~llH 147 (241)
T PF03102_consen 123 STLEEIERAVEVLREAGNEDLVLLH 147 (241)
T ss_dssp --HHHHHHHHHHHHHHCT--EEEEE
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEEe
Confidence 5777777777776 44444444333
No 156
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=61.36 E-value=30 Score=35.68 Aligned_cols=108 Identities=13% Similarity=0.171 Sum_probs=78.6
Q ss_pred cChhhHHHHHHHhhhcCC--ceeecCCCCcccHHHHHHHHhhh---CCceEEEcccccccCHHHHHHHHhccCcceeEee
Q 040341 85 VSGDGLKNVYRSFISDHP--IVSIEDPFDQDDWEHHAELTGKI---GRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 159 (251)
Q Consensus 85 ~s~~elid~~~~l~~~yp--I~~IEDP~~e~D~~~~~~l~~~l---g~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK 159 (251)
.+.+.-++...+| .+-+ ||=|==| ..+|-+....+.++| |-.+|+|+|-- .+++..-.+++. +..|=|-
T Consensus 107 ~D~eatv~Qi~~l-~~aGceiVRvtv~-~~~~A~al~~I~~~L~~~g~~iPLVADIH--F~~~~Al~a~~~--vdkiRIN 180 (733)
T PLN02925 107 KDVEATVDQVMRI-ADKGADIVRITVQ-GKKEADACFEIKNTLVQKGYNIPLVADIH--FAPSVALRVAEC--FDKIRVN 180 (733)
T ss_pred ccHHHHHHHHHHH-HHcCCCEEEEcCC-CHHHHHhHHHHHHHHhhcCCCCCEEEecC--CCHHHHHHHHHh--cCCeEEC
Confidence 3444555666664 4444 6655433 346778888888863 44899999964 488888888775 8899999
Q ss_pred ccccccH----------------------HHHHHHHHHHHHcCCcEEEecCCCCCCchhHh
Q 040341 160 VNQIGSV----------------------TESIEAVKMSKRAGWGVMASHRSGETEDTFIA 198 (251)
Q Consensus 160 ~nqiGtl----------------------te~l~~~~~a~~~g~~~ivs~rsgEt~d~~ia 198 (251)
|+.+|.- .....+++.|+++|..+-||..+|--++.++.
T Consensus 181 PGN~~~~~k~F~~~eYtdeeY~~Ele~i~e~f~~~v~~ak~~~~~iRIGvN~GSLs~ri~~ 241 (733)
T PLN02925 181 PGNFADRRAQFEKLEYTEDDYQKELEHIEEVFTPLVEKCKKYGRAMRIGTNHGSLSDRIMS 241 (733)
T ss_pred CcccCCccccccccccchhhhhhhHHHHHHHHHHHHHHHHHCCCCEEEecCCcCchHHHHH
Confidence 9999887 33455899999999999999998876655444
No 157
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=60.87 E-value=41 Score=31.97 Aligned_cols=101 Identities=17% Similarity=0.246 Sum_probs=61.8
Q ss_pred ccChhhHHHHHHHhhhcCCc-----eeec---CCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcce
Q 040341 84 KVSGDGLKNVYRSFISDHPI-----VSIE---DPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNA 155 (251)
Q Consensus 84 ~~s~~elid~~~~l~~~ypI-----~~IE---DP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ 155 (251)
.++++++.+++..+.+.+|+ +++| +-+.++.+..|+ +.|-.-.-+|=+. .+.+.+
T Consensus 79 ~l~~~~l~~ll~~i~~~~~~~~~~eit~E~~P~~lt~e~l~~l~----~~GvnrislGvQS--~~d~~L----------- 141 (400)
T PRK07379 79 LLSVEQLERILTTLDQRFGIAPDAEISLEIDPGTFDLEQLQGYR----SLGVNRVSLGVQA--FQDELL----------- 141 (400)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCcCCHHHHHHHH----HCCCCEEEEEccc--CCHHHH-----------
Confidence 46778877777665555554 4555 334444444333 2343322333331 122222
Q ss_pred eEeeccccccHHHHHHHHHHHHHcCCc-E----EEecCCCCCCchhHhhhhhhc
Q 040341 156 LLLKVNQIGSVTESIEAVKMSKRAGWG-V----MASHRSGETEDTFIADLSVGL 204 (251)
Q Consensus 156 ilIK~nqiGtlte~l~~~~~a~~~g~~-~----ivs~rsgEt~d~~iadLAva~ 204 (251)
-.+|+.-+..+++++++.++++|+. + |+|- .|+|.+++..+|..+.
T Consensus 142 --~~l~R~~~~~~~~~ai~~l~~~G~~~v~~dlI~Gl-Pgqt~e~~~~tl~~~~ 192 (400)
T PRK07379 142 --ALCGRSHRVKDIFAAVDLIHQAGIENFSLDLISGL-PHQTLEDWQASLEAAI 192 (400)
T ss_pred --HHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCC-CCCCHHHHHHHHHHHH
Confidence 2467888999999999999999987 3 3343 4899888887776554
No 158
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=60.81 E-value=13 Score=28.55 Aligned_cols=53 Identities=19% Similarity=0.274 Sum_probs=41.6
Q ss_pred ceeEeeccccccHHHHHHHHHHHHHcCCcEEEecCCCCCCchhHhhhhhhccc
Q 040341 154 NALLLKVNQIGSVTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLAT 206 (251)
Q Consensus 154 n~ilIK~nqiGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d~~iadLAva~~~ 206 (251)
+-++|=+++-|.-.|++++++.|+++|.+++.=....++.-...+|..+-..+
T Consensus 47 ~d~~I~iS~sG~t~e~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad~~l~~~~ 99 (126)
T cd05008 47 DTLVIAISQSGETADTLAALRLAKEKGAKTVAITNVVGSTLAREADYVLYLRA 99 (126)
T ss_pred CcEEEEEeCCcCCHHHHHHHHHHHHcCCeEEEEECCCCChHHHhCCEEEEecC
Confidence 44566688889999999999999999999886666667766777777665544
No 159
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=60.70 E-value=28 Score=30.85 Aligned_cols=88 Identities=17% Similarity=0.209 Sum_probs=52.0
Q ss_pred ccHHHHHHHHHHHHHcCCcEEE-ecCCCCCCchhHhhhh-hhccc---Ccccc-CCCCchhHHHHhhHHHHHHHH-----
Q 040341 164 GSVTESIEAVKMSKRAGWGVMA-SHRSGETEDTFIADLS-VGLAT---GQIKT-GAPCRSERLAKYNQLLRIEEE----- 232 (251)
Q Consensus 164 Gtlte~l~~~~~a~~~g~~~iv-s~rsgEt~d~~iadLA-va~~~---~~ik~-G~~~r~Er~aKyN~llrie~~----- 232 (251)
-.+-.++++++.++++|+.+++ +.|+......+..+|. +|... =.++. ++...+...=|--+.-+|+++
T Consensus 120 paip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~~G~~~~~~LiLR~~~d~~~~~~~yKs~~R~~l~~~GYrIv 199 (229)
T TIGR01675 120 PALPEGLKLYQKIIELGIKIFLLSGRWEELRNATLDNLINAGFTGWKHLILRGLEDSNKTVVTYKSEVRKSLMEEGYRIW 199 (229)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHHcCCCCcCeeeecCCCCCCchHhHHHHHHHHHHHhCCceEE
Confidence 3556788999999999998855 7776655555667773 33321 12333 333222222266677677765
Q ss_pred --hCC-----CccccC-ccccCCCCCC
Q 040341 233 --LGP-----AAIYAG-TKFRAPVEPY 251 (251)
Q Consensus 233 --l~~-----~~~~~~-~~~~~~~~~~ 251 (251)
+|+ .+-++| +.|.-|+..|
T Consensus 200 ~~iGDq~sDl~G~~~~~RtFKLPNPmY 226 (229)
T TIGR01675 200 GNIGDQWSDLLGSPPGRRTFKLPNPMY 226 (229)
T ss_pred EEECCChHHhcCCCccCceeeCCCCcc
Confidence 333 234566 7777776543
No 160
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=59.91 E-value=68 Score=29.93 Aligned_cols=69 Identities=7% Similarity=0.097 Sum_probs=40.0
Q ss_pred ccChhhHHHHHHHhhhcCCceeec--CCC--------CcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCc
Q 040341 84 KVSGDGLKNVYRSFISDHPIVSIE--DPF--------DQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTC 153 (251)
Q Consensus 84 ~~s~~elid~~~~l~~~ypI~~IE--DP~--------~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~ 153 (251)
..+.+|.+++.+. +++.++-+|+ -+. ....+..++.+.+.+..+++|++-- -++++++++++++.+ |
T Consensus 231 g~~~ee~~~i~~~-L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~~G-gi~t~e~ae~~l~~g-a 307 (353)
T cd04735 231 GIRMEDTLALVDK-LADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLIAVG-SINTPDDALEALETG-A 307 (353)
T ss_pred CCCHHHHHHHHHH-HHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhCCCCCEEEEC-CCCCHHHHHHHHHcC-C
Confidence 3567888776666 5777654443 110 1123555666666553234555443 367899999988874 5
Q ss_pred ce
Q 040341 154 NA 155 (251)
Q Consensus 154 n~ 155 (251)
+.
T Consensus 308 D~ 309 (353)
T cd04735 308 DL 309 (353)
T ss_pred Ch
Confidence 43
No 161
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=59.79 E-value=64 Score=23.36 Aligned_cols=78 Identities=15% Similarity=0.263 Sum_probs=46.5
Q ss_pred ChhhHHHHHHHhhhcCCceeecCCCCcccHHH-HHHHHhhhCCc--eEEEcccccccCHHHHHHHHhccCcceeEeeccc
Q 040341 86 SGDGLKNVYRSFISDHPIVSIEDPFDQDDWEH-HAELTGKIGRH--VQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQ 162 (251)
Q Consensus 86 s~~elid~~~~l~~~ypI~~IEDP~~e~D~~~-~~~l~~~lg~~--~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nq 162 (251)
++++...++.+ ..+.++.+.--+...+... .+.+. +.+++ +-++.++ .+.....++.+. .++.++.||-.
T Consensus 31 ~~~~~~~~~~~--~~~d~iiid~~~~~~~~~~~~~~i~-~~~~~~~ii~~t~~---~~~~~~~~~~~~-g~~~~l~kp~~ 103 (112)
T PF00072_consen 31 SGEEALELLKK--HPPDLIIIDLELPDGDGLELLEQIR-QINPSIPIIVVTDE---DDSDEVQEALRA-GADDYLSKPFS 103 (112)
T ss_dssp SHHHHHHHHHH--STESEEEEESSSSSSBHHHHHHHHH-HHTTTSEEEEEESS---TSHHHHHHHHHT-TESEEEESSSS
T ss_pred CHHHHHHHhcc--cCceEEEEEeeeccccccccccccc-cccccccEEEecCC---CCHHHHHHHHHC-CCCEEEECCCC
Confidence 56677776654 4466888776555545444 44444 33334 4444544 346666777744 57889999976
Q ss_pred cccHHHHH
Q 040341 163 IGSVTESI 170 (251)
Q Consensus 163 iGtlte~l 170 (251)
...+.+++
T Consensus 104 ~~~l~~~i 111 (112)
T PF00072_consen 104 PEELRAAI 111 (112)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 55555544
No 162
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=59.52 E-value=1.4e+02 Score=27.31 Aligned_cols=124 Identities=17% Similarity=0.231 Sum_probs=73.5
Q ss_pred CccChhhHHHHHHHhhhcCCceee--cCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeec
Q 040341 83 QKVSGDGLKNVYRSFISDHPIVSI--EDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKV 160 (251)
Q Consensus 83 ~~~s~~elid~~~~l~~~ypI~~I--EDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~ 160 (251)
..+|.++.++...+. ..+++.| =+||-..|+....+.....|..+.|+-.=+..+ +.+...... .-..+.|.+
T Consensus 57 ~~ls~ee~~~~i~e~--g~~~V~i~GGEPLL~pdl~eiv~~~~~~g~~v~l~TNG~ll~--~~~~~l~~~-~~~~i~VSL 131 (318)
T TIGR03470 57 QRLSVEECLRAVDEC--GAPVVSIPGGEPLLHPEIDEIVRGLVARKKFVYLCTNALLLE--KKLDKFEPS-PYLTFSVHL 131 (318)
T ss_pred cCCCHHHHHHHHHHc--CCCEEEEeCccccccccHHHHHHHHHHcCCeEEEecCceehH--HHHHHHHhC-CCcEEEEEE
Confidence 457888876654431 2345555 479988898777766665554555543332211 222222111 123455554
Q ss_pred -----------cccccHHHHHHHHHHHHHcCCcEEEecC--CCC--CCchhHhhhhhhcccCcccc
Q 040341 161 -----------NQIGSVTESIEAVKMSKRAGWGVMASHR--SGE--TEDTFIADLSVGLATGQIKT 211 (251)
Q Consensus 161 -----------nqiGtlte~l~~~~~a~~~g~~~ivs~r--sgE--t~d~~iadLAva~~~~~ik~ 211 (251)
++-|+...+++.++.++++|+.+.|... .++ .+-.-+++++..++...+..
T Consensus 132 DG~~e~hd~~~~~~g~f~~~l~~I~~l~~~G~~v~v~~tv~~~~n~~ei~~~~~~~~~lGv~~i~i 197 (318)
T TIGR03470 132 DGLREHHDASVCREGVFDRAVEAIREAKARGFRVTTNTTLFNDTDPEEVAEFFDYLTDLGVDGMTI 197 (318)
T ss_pred ecCchhhchhhcCCCcHHHHHHHHHHHHHCCCcEEEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 3458899999999999999999877542 133 23456677777777654433
No 163
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=59.51 E-value=1e+02 Score=26.09 Aligned_cols=111 Identities=9% Similarity=0.001 Sum_probs=64.1
Q ss_pred cChhhHHHHHHHhhhcCCceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeeccccc
Q 040341 85 VSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIG 164 (251)
Q Consensus 85 ~s~~elid~~~~l~~~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqiG 164 (251)
.+.++.++....++ +-++-.||=.+...++..+-+..+++...+ .+|.- .+.+.++++.+++.++- .+. ..+.+
T Consensus 21 ~~~~~~~~~~~~~~-~~Gv~~vqlr~k~~~~~e~~~~~~~~~~~~-~~g~g-tvl~~d~~~~A~~~gAd-gv~--~p~~~ 94 (187)
T PRK07455 21 PDLELGLQMAEAVA-AGGMRLIEITWNSDQPAELISQLREKLPEC-IIGTG-TILTLEDLEEAIAAGAQ-FCF--TPHVD 94 (187)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEEeCCCCCHHHHHHHHHHhCCCc-EEeEE-EEEcHHHHHHHHHcCCC-EEE--CCCCC
Confidence 36677777777754 447888887777666666666665553322 35555 45666999988876543 221 11221
Q ss_pred cHHHHHHHHHHHHHcCCcEEEecCCCCCCchhHhhhhhhcccCcccc
Q 040341 165 SVTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLATGQIKT 211 (251)
Q Consensus 165 tlte~l~~~~~a~~~g~~~ivs~rsgEt~d~~iadLAva~~~~~ik~ 211 (251)
.+.++.++..+...++|+. ...=+--|...++.++|.
T Consensus 95 -----~~~~~~~~~~~~~~i~G~~-----t~~e~~~A~~~Gadyv~~ 131 (187)
T PRK07455 95 -----PELIEAAVAQDIPIIPGAL-----TPTEIVTAWQAGASCVKV 131 (187)
T ss_pred -----HHHHHHHHHcCCCEEcCcC-----CHHHHHHHHHCCCCEEEE
Confidence 2455566677777777632 111133444456666665
No 164
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=59.47 E-value=86 Score=28.34 Aligned_cols=111 Identities=15% Similarity=0.249 Sum_probs=77.3
Q ss_pred ccChhhHHHHHHHhhhcCC---ce-eecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEee
Q 040341 84 KVSGDGLKNVYRSFISDHP---IV-SIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 159 (251)
Q Consensus 84 ~~s~~elid~~~~l~~~yp---I~-~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK 159 (251)
.+++.+....|. +|+ |. .-|.++-...++......+.+ ..||.--| |+-.|..|..|-..| +++|||=
T Consensus 65 d~dp~~ia~~Ye----~~GAa~iSVLTd~~~F~Gs~e~L~~v~~~v--~~PvL~KD-FiiD~yQI~~Ar~~G-ADavLLI 136 (254)
T COG0134 65 DFDPVEIAKAYE----EGGAAAISVLTDPKYFQGSFEDLRAVRAAV--DLPVLRKD-FIIDPYQIYEARAAG-ADAVLLI 136 (254)
T ss_pred cCCHHHHHHHHH----HhCCeEEEEecCccccCCCHHHHHHHHHhc--CCCeeecc-CCCCHHHHHHHHHcC-cccHHHH
Confidence 456667555555 454 22 237788889999999998888 68888888 899999999887775 4555553
Q ss_pred ccccccHHHHHHHHHHHHHcCCcEEEecCCCCCCchhHhhhhhhcccCc
Q 040341 160 VNQIGSVTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLATGQ 208 (251)
Q Consensus 160 ~nqiGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d~~iadLAva~~~~~ 208 (251)
+.-. +=.+.-+..+.|++.|+.+.|.-...|. .+.|+..++..
T Consensus 137 ~~~L-~~~~l~el~~~A~~LGm~~LVEVh~~eE-----l~rAl~~ga~i 179 (254)
T COG0134 137 VAAL-DDEQLEELVDRAHELGMEVLVEVHNEEE-----LERALKLGAKI 179 (254)
T ss_pred HHhc-CHHHHHHHHHHHHHcCCeeEEEECCHHH-----HHHHHhCCCCE
Confidence 3322 2235678899999999999998875443 44444444433
No 165
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=59.16 E-value=1.4e+02 Score=27.14 Aligned_cols=119 Identities=10% Similarity=0.112 Sum_probs=68.6
Q ss_pred CCccChhhHHHHHHHhhhcCCceee----cCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHH----HHHHHhccCc
Q 040341 82 SQKVSGDGLKNVYRSFISDHPIVSI----EDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKR----VEKAIKEKTC 153 (251)
Q Consensus 82 ~~~~s~~elid~~~~l~~~ypI~~I----EDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~----i~~~i~~~a~ 153 (251)
...+|.+|+.+.... +.++++-.| =+||-..|+...-+..++.+....|. ..||-.. +++..+. ..
T Consensus 46 ~~~ls~eei~~~i~~-~~~~gi~~I~~tGGEPll~~~l~~li~~i~~~~~~~~i~----itTNG~ll~~~~~~L~~a-gl 119 (331)
T PRK00164 46 EELLSLEEIERLVRA-FVALGVRKVRLTGGEPLLRKDLEDIIAALAALPGIRDLA----LTTNGYLLARRAAALKDA-GL 119 (331)
T ss_pred cccCCHHHHHHHHHH-HHHCCCCEEEEECCCCcCccCHHHHHHHHHhcCCCceEE----EEcCchhHHHHHHHHHHc-CC
Confidence 456889998776655 455665444 25998888776555444431111221 2345322 2222222 23
Q ss_pred ceeEeec-----------cccccHHHHHHHHHHHHHcCC-cEEEec--CCCCCC--chhHhhhhhhccc
Q 040341 154 NALLLKV-----------NQIGSVTESIEAVKMSKRAGW-GVMASH--RSGETE--DTFIADLSVGLAT 206 (251)
Q Consensus 154 n~ilIK~-----------nqiGtlte~l~~~~~a~~~g~-~~ivs~--rsgEt~--d~~iadLAva~~~ 206 (251)
+.++|.+ ++-+++.+.++.++.+++.|+ .+.+.. ..|.+. -.-+++++...+.
T Consensus 120 ~~i~ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~~~gv 188 (331)
T PRK00164 120 DRVNVSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAKDRGI 188 (331)
T ss_pred CEEEEEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHHhCCC
Confidence 4566654 345789999999999999998 664432 124443 3445667765554
No 166
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=58.79 E-value=66 Score=31.89 Aligned_cols=130 Identities=12% Similarity=0.109 Sum_probs=76.2
Q ss_pred CccChhhHHHHHHHhhhcCCceeecCC-----------CCcccHHHHHHHHhhhCC-ceEEEc-------ccccc--cCH
Q 040341 83 QKVSGDGLKNVYRSFISDHPIVSIEDP-----------FDQDDWEHHAELTGKIGR-HVQIVG-------DDLLV--TNP 141 (251)
Q Consensus 83 ~~~s~~elid~~~~l~~~ypI~~IEDP-----------~~e~D~~~~~~l~~~lg~-~~~ivg-------Ddl~v--tn~ 141 (251)
..++.+|++..... +++-++-+||=- +.|++|+....+.+.+.+ +.+... -.-+- ...
T Consensus 22 tr~~t~d~l~ia~~-ld~~G~~siE~~GGatfd~~~rfl~Edpwerlr~lr~~~~nt~lqmL~Rg~N~vGy~~y~ddvv~ 100 (499)
T PRK12330 22 TRMAMEDMVGACED-IDNAGYWSVECWGGATFDACIRFLNEDPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYEDEVVD 100 (499)
T ss_pred ccCCHHHHHHHHHH-HHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCCeEEEEEcccccCCccCcchhHHH
Confidence 46799999997776 688899999976 668999999999988743 222222 11000 012
Q ss_pred HHHHHHHhccCcce-eEeeccccccHHHHHHHHHHHHHcCCcE--EEe-cCCCCCCchhHhhhh---hhcccCccccCCC
Q 040341 142 KRVEKAIKEKTCNA-LLLKVNQIGSVTESIEAVKMSKRAGWGV--MAS-HRSGETEDTFIADLS---VGLATGQIKTGAP 214 (251)
Q Consensus 142 ~~i~~~i~~~a~n~-ilIK~nqiGtlte~l~~~~~a~~~g~~~--ivs-~rsgEt~d~~iadLA---va~~~~~ik~G~~ 214 (251)
..++++++.+.--. +-.-+|-+-.+..++ +.++++|..+ -|+ ..|.+....+++++| +..++..|..-+.
T Consensus 101 ~fv~~a~~~Gidi~RIfd~lndv~nl~~ai---~~vk~ag~~~~~~i~yt~sp~~t~e~~~~~a~~l~~~Gad~I~IkDt 177 (499)
T PRK12330 101 RFVEKSAENGMDVFRVFDALNDPRNLEHAM---KAVKKVGKHAQGTICYTVSPIHTVEGFVEQAKRLLDMGADSICIKDM 177 (499)
T ss_pred HHHHHHHHcCCCEEEEEecCChHHHHHHHH---HHHHHhCCeEEEEEEEecCCCCCHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 35666665543322 223356664554444 4555555544 111 224556667766654 5566777765554
Q ss_pred Cc
Q 040341 215 CR 216 (251)
Q Consensus 215 ~r 216 (251)
.+
T Consensus 178 aG 179 (499)
T PRK12330 178 AA 179 (499)
T ss_pred cc
Confidence 44
No 167
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=58.77 E-value=99 Score=27.95 Aligned_cols=122 Identities=13% Similarity=0.202 Sum_probs=84.3
Q ss_pred ecCCCCcccHHHHHHHHhhhCCceEEEcccc-------cccCHHH-HHHHHhccCcceeEeeccccccHHHHHHHHHHHH
Q 040341 106 IEDPFDQDDWEHHAELTGKIGRHVQIVGDDL-------LVTNPKR-VEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSK 177 (251)
Q Consensus 106 IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl-------~vtn~~~-i~~~i~~~a~n~ilIK~nqiGtlte~l~~~~~a~ 177 (251)
=.|++-+-+--.-.+++.+++.++.|..|=. ..++.+. ++..++.+.++++++.=.+.|+-...-++...++
T Consensus 123 tdqGiieg~A~e~~r~r~~L~~~v~vlADv~VKHa~~l~~~~~~~~v~dtver~~aDaVI~tG~~TG~~~d~~el~~a~~ 202 (263)
T COG0434 123 TDQGIIEGNAAELARYRARLGSRVKVLADVHVKHAVHLGNRSLEEAVKDTVERGLADAVIVTGSRTGSPPDLEELKLAKE 202 (263)
T ss_pred cccceecchHHHHHHHHHhccCCcEEEeecchhcccccCCcCHHHHHHHHHHccCCCEEEEecccCCCCCCHHHHHHHHh
Confidence 3556666666666678888888888888842 2235443 3446889999999999999999888777777777
Q ss_pred HcCCcEEEecCCCCCCchhHhhhhhhc-ccCccccCC----CCchhHHHHhhHHH
Q 040341 178 RAGWGVMASHRSGETEDTFIADLSVGL-ATGQIKTGA----PCRSERLAKYNQLL 227 (251)
Q Consensus 178 ~~g~~~ivs~rsgEt~d~~iadLAva~-~~~~ik~G~----~~r~Er~aKyN~ll 227 (251)
....++.+|+..-.-....+-++|=|. -+..+|-|+ |-..||+.++=++.
T Consensus 203 ~~~~pvlvGSGv~~eN~~~~l~~adG~IvgT~lK~~G~~~n~VD~~Rv~~~v~~a 257 (263)
T COG0434 203 AVDTPVLVGSGVNPENIEELLKIADGVIVGTSLKKGGVTWNPVDLERVRRFVEAA 257 (263)
T ss_pred ccCCCEEEecCCCHHHHHHHHHHcCceEEEEEEccCCEecCccCHHHHHHHHHHH
Confidence 777999999854433334444444333 235788888 88889887665543
No 168
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=58.52 E-value=1.6e+02 Score=27.45 Aligned_cols=127 Identities=13% Similarity=0.199 Sum_probs=77.0
Q ss_pred CCccChhhHHHHHHHhhhcCCc--eee--cCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeE
Q 040341 82 SQKVSGDGLKNVYRSFISDHPI--VSI--EDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALL 157 (251)
Q Consensus 82 ~~~~s~~elid~~~~l~~~ypI--~~I--EDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~il 157 (251)
...++.+++.+.+.++ .+.++ +.| =+||-..|+...-+..++.|-.+.|+-.=. .-+.+.+++..+.+ .+.|.
T Consensus 43 ~~~~~~e~~~~ii~~~-~~~g~~~v~~~GGEPll~~~~~~il~~~~~~g~~~~i~TNG~-ll~~~~~~~L~~~g-~~~v~ 119 (378)
T PRK05301 43 GAELSTEEWIRVLREA-RALGALQLHFSGGEPLLRKDLEELVAHARELGLYTNLITSGV-GLTEARLAALKDAG-LDHIQ 119 (378)
T ss_pred cCCCCHHHHHHHHHHH-HHcCCcEEEEECCccCCchhHHHHHHHHHHcCCcEEEECCCc-cCCHHHHHHHHHcC-CCEEE
Confidence 3467888877766663 55664 333 369988887665544444443444443332 22445555544332 34455
Q ss_pred eeccc------------cccHHHHHHHHHHHHHcCCcEEEecCCC---CCCchhHhhhhhhcccCcccc
Q 040341 158 LKVNQ------------IGSVTESIEAVKMSKRAGWGVMASHRSG---ETEDTFIADLSVGLATGQIKT 211 (251)
Q Consensus 158 IK~nq------------iGtlte~l~~~~~a~~~g~~~ivs~rsg---Et~d~~iadLAva~~~~~ik~ 211 (251)
|.+.- -|+...+++.++.+++.|+.+.|..-.. ..+-.-+++++..++...+..
T Consensus 120 iSldg~~~e~~d~irg~~g~f~~~~~~i~~l~~~g~~v~i~~vv~~~N~~~i~~~~~~~~~lgv~~i~~ 188 (378)
T PRK05301 120 LSFQDSDPELNDRLAGTKGAFAKKLAVARLVKAHGYPLTLNAVIHRHNIDQIPRIIELAVELGADRLEL 188 (378)
T ss_pred EEecCCCHHHHHHHcCCCchHHHHHHHHHHHHHCCCceEEEEEeecCCHHHHHHHHHHHHHcCCCEEEE
Confidence 54421 2689999999999999999986654322 223345688888888876653
No 169
>PRK08444 hypothetical protein; Provisional
Probab=58.43 E-value=1e+02 Score=29.04 Aligned_cols=105 Identities=15% Similarity=0.180 Sum_probs=58.7
Q ss_pred ccChhhHHHHHHHhhhcCC-----ceeecCCCCcccHHHHHHHHhhhCC---ceEEEc---cc-------ccccCHHHHH
Q 040341 84 KVSGDGLKNVYRSFISDHP-----IVSIEDPFDQDDWEHHAELTGKIGR---HVQIVG---DD-------LLVTNPKRVE 145 (251)
Q Consensus 84 ~~s~~elid~~~~l~~~yp-----I~~IEDP~~e~D~~~~~~l~~~lg~---~~~ivg---Dd-------l~vtn~~~i~ 145 (251)
.+|.+|+++..++. .+.+ |++=+.|.. +++-+.++-+.+.. .+.|++ .| +-.+..+.++
T Consensus 79 ~ls~eeI~~~a~~a-~~~G~~ei~iv~G~~p~~--~~e~y~e~ir~Ik~~~p~i~i~a~s~~Ei~~~a~~~g~~~~e~l~ 155 (353)
T PRK08444 79 TMSHEEILEIVKNS-VKRGIKEVHIVSAHNPNY--GYEWYLEIFKKIKEAYPNLHVKAMTAAEVDFLSRKFGKSYEEVLE 155 (353)
T ss_pred cCCHHHHHHHHHHH-HHCCCCEEEEeccCCCCC--CHHHHHHHHHHHHHHCCCceEeeCCHHHHHHHHHHcCCCHHHHHH
Confidence 47899999988874 5555 333366655 45555555544422 366764 11 0112223333
Q ss_pred HHHhccC----c---cee------EeeccccccHHHHHHHHHHHHHcCCcE----EEecCCCCCCc
Q 040341 146 KAIKEKT----C---NAL------LLKVNQIGSVTESIEAVKMSKRAGWGV----MASHRSGETED 194 (251)
Q Consensus 146 ~~i~~~a----~---n~i------lIK~nqiGtlte~l~~~~~a~~~g~~~----ivs~rsgEt~d 194 (251)
+..+.|. . ..+ .|-|.+. +-.+-+++++.|++.|+.+ |+|| |||..
T Consensus 156 ~LkeAGl~~~~g~~aEi~~~~vr~~I~p~k~-~~~~~~~i~~~a~~~Gi~~~sg~l~G~--gEt~e 218 (353)
T PRK08444 156 DMLEYGVDSMPGGGAEIFDEEVRKKICKGKV-SSERWLEIHKYWHKKGKMSNATMLFGH--IENRE 218 (353)
T ss_pred HHHHhCcccCCCCCchhcCHHHHhhhCCCCC-CHHHHHHHHHHHHHcCCCccceeEEec--CCCHH
Confidence 3333222 1 111 2345553 4466788889999999987 7777 58843
No 170
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=58.15 E-value=13 Score=34.57 Aligned_cols=54 Identities=19% Similarity=0.281 Sum_probs=42.0
Q ss_pred ceeEeeccccccHHHHHHHHHHHHHcCCcEEEecCCCCCCchhHhhhhhhcccC
Q 040341 154 NALLLKVNQIGSVTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLATG 207 (251)
Q Consensus 154 n~ilIK~nqiGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d~~iadLAva~~~~ 207 (251)
+.+.|=++|-|.-.+++++++.|+++|..++.=....++.-+..+|..+-+++|
T Consensus 93 ~~lvI~iS~SGeT~e~i~al~~ak~~Ga~~I~IT~~~~S~L~~~ad~~l~~~ag 146 (340)
T PRK11382 93 RCAVIGVSDYGKTEEVIKALELGRACGALTAAFTKRADSPITSAAEFSIDYQAD 146 (340)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEECCCCChHHHhCCEEEEeCCC
Confidence 446677899999999999999999999887665555667666777777666644
No 171
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=57.94 E-value=89 Score=28.96 Aligned_cols=86 Identities=12% Similarity=0.166 Sum_probs=59.8
Q ss_pred ceeecCCCCcccHHHHHHHHhhhCCceEEEc-ccccccCHHHHHHHHhccCcceeEee--ccccccHHHHHHHHHHHHHc
Q 040341 103 IVSIEDPFDQDDWEHHAELTGKIGRHVQIVG-DDLLVTNPKRVEKAIKEKTCNALLLK--VNQIGSVTESIEAVKMSKRA 179 (251)
Q Consensus 103 I~~IEDP~~e~D~~~~~~l~~~lg~~~~ivg-Ddl~vtn~~~i~~~i~~~a~n~ilIK--~nqiGtlte~l~~~~~a~~~ 179 (251)
-+.+.+|-+...+..|..+.++.|-++..+- |.-...+++.+++++..+ ...+.+- .|-.|++...-+++++|+++
T Consensus 108 ~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~i~~~-t~lv~i~~~~n~tG~~~~~~~i~~~~~~~ 186 (398)
T TIGR03392 108 EIIVSEAEHHANLIPWLMVAQQTGAKVVKLPIGADLLPDIRQLPELLTPR-TRILALGQMSNVTGGCPDLARAITLAHQY 186 (398)
T ss_pred EEEECCcchhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHHHhccC-ceEEEEECccccccccCCHHHHHHHHHHc
Confidence 5667777766667778888777776554442 322345788999888654 3444432 25788888888899999999
Q ss_pred CCcEEEecCC
Q 040341 180 GWGVMASHRS 189 (251)
Q Consensus 180 g~~~ivs~rs 189 (251)
|+.++|-.-.
T Consensus 187 ~~~~ivD~a~ 196 (398)
T TIGR03392 187 GAVVVVDGAQ 196 (398)
T ss_pred CCEEEEEhhh
Confidence 9988776544
No 172
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=57.17 E-value=50 Score=30.93 Aligned_cols=71 Identities=21% Similarity=0.215 Sum_probs=44.4
Q ss_pred hhhCCceEEEcccccccCHHHHHHHHhccCcceeEeeccccccHHHHHHHHHHHHHcCCcEEEecCCCCCCc
Q 040341 123 GKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAGWGVMASHRSGETED 194 (251)
Q Consensus 123 ~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqiGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d 194 (251)
++++.++.||.|.... ..+++...++........+-...--++....++++++++++..++|+-.-|-.-|
T Consensus 19 ~~~~~r~livtd~~~~-~~~~v~~~L~~~g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~~D 89 (374)
T cd08183 19 AELGRRVLLVTGASSL-RAAWLIEALRAAGIEVTHVVVAGEPSVELVDAAVAEARNAGCDVVIAIGGGSVID 89 (374)
T ss_pred HHcCCcEEEEECCchH-HHHHHHHHHHHcCCeEEEecCCCCcCHHHHHHHHHHHHhcCCCEEEEecCchHHH
Confidence 3345677777776333 4455555554433333332222234677888899999999999999998666544
No 173
>PLN02389 biotin synthase
Probab=56.88 E-value=75 Score=30.21 Aligned_cols=113 Identities=13% Similarity=0.163 Sum_probs=67.4
Q ss_pred ccChhhHHHHHHHhhhcCCc---eee---cCCCCcc-cHHHHHHHHhhhCC-ceEEEcccccccCHHHHHHHHhccCcce
Q 040341 84 KVSGDGLKNVYRSFISDHPI---VSI---EDPFDQD-DWEHHAELTGKIGR-HVQIVGDDLLVTNPKRVEKAIKEKTCNA 155 (251)
Q Consensus 84 ~~s~~elid~~~~l~~~ypI---~~I---EDP~~e~-D~~~~~~l~~~lg~-~~~ivgDdl~vtn~~~i~~~i~~~a~n~ 155 (251)
.++++|+++..++. .+.++ +.. -++..++ +++.+.++.+.+.. .+.||.-- =..+.+.+++.-+.| ++.
T Consensus 115 ~Ls~EeIl~~a~~~-~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~~~l~i~~s~-G~l~~E~l~~LkeAG-ld~ 191 (379)
T PLN02389 115 LMSKDDVLEAAKRA-KEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGMGMEVCCTL-GMLEKEQAAQLKEAG-LTA 191 (379)
T ss_pred cCCHHHHHHHHHHH-HHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhcCCcEEEECC-CCCCHHHHHHHHHcC-CCE
Confidence 57999999988874 44453 222 1344442 46666666555521 23444111 123556666544433 333
Q ss_pred eEeecc-------c---cccHHHHHHHHHHHHHcCCcE----EEecCCCCCCchhHhhhh
Q 040341 156 LLLKVN-------Q---IGSVTESIEAVKMSKRAGWGV----MASHRSGETEDTFIADLS 201 (251)
Q Consensus 156 ilIK~n-------q---iGtlte~l~~~~~a~~~g~~~----ivs~rsgEt~d~~iadLA 201 (251)
+++.+. + -.+..+-+++++.|++.|+.+ |+|+ |||..+.+.++-
T Consensus 192 ~~~~LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v~sg~IiGl--gEt~edrv~~l~ 249 (379)
T PLN02389 192 YNHNLDTSREYYPNVITTRSYDDRLETLEAVREAGISVCSGGIIGL--GEAEEDRVGLLH 249 (379)
T ss_pred EEeeecCChHHhCCcCCCCCHHHHHHHHHHHHHcCCeEeEEEEECC--CCCHHHHHHHHH
Confidence 443332 1 368899999999999999988 6676 899877666554
No 174
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=56.57 E-value=1.6e+02 Score=29.15 Aligned_cols=123 Identities=11% Similarity=0.075 Sum_probs=72.8
Q ss_pred ChhhHHHHHHHhhhcCCceeecCCCCccc----HHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEe--e
Q 040341 86 SGDGLKNVYRSFISDHPIVSIEDPFDQDD----WEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLL--K 159 (251)
Q Consensus 86 s~~elid~~~~l~~~ypI~~IEDP~~e~D----~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilI--K 159 (251)
++++..+....|++. ++-.|+=+.++.. .+.-+++.+..+.++.|++-. |.+++.++.+++.|+ +++.+ -
T Consensus 239 ~~~~~~~ra~~Lv~a-Gvd~i~vd~a~g~~~~~~~~i~~ir~~~~~~~~V~aGn--V~t~e~a~~li~aGA-d~I~vg~g 314 (502)
T PRK07107 239 NTRDYAERVPALVEA-GADVLCIDSSEGYSEWQKRTLDWIREKYGDSVKVGAGN--VVDREGFRYLAEAGA-DFVKVGIG 314 (502)
T ss_pred ChhhHHHHHHHHHHh-CCCeEeecCcccccHHHHHHHHHHHHhCCCCceEEecc--ccCHHHHHHHHHcCC-CEEEECCC
Confidence 445556777777663 4433332255444 667777888776557777663 678999999988765 44433 1
Q ss_pred cc-----c----c--ccHHHHHHHHHHH----HHcC--CcEEEecCCCCCCchhHhh--hhhhcccCccccCCCCch
Q 040341 160 VN-----Q----I--GSVTESIEAVKMS----KRAG--WGVMASHRSGETEDTFIAD--LSVGLATGQIKTGAPCRS 217 (251)
Q Consensus 160 ~n-----q----i--Gtlte~l~~~~~a----~~~g--~~~ivs~rsgEt~d~~iad--LAva~~~~~ik~G~~~r~ 217 (251)
|+ | + ..+|...++++.+ ++.| +++|.-..--.. .| -|+|+|+..+..|.+-.+
T Consensus 315 ~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~-----gdi~KAla~GA~~vm~G~~~ag 386 (502)
T PRK07107 315 GGSICITREQKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIVYD-----YHMTLALAMGADFIMLGRYFAR 386 (502)
T ss_pred CCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCch-----hHHHHHHHcCCCeeeeChhhhc
Confidence 23 2 2 2444555555543 4457 566655432222 34 356678888888887654
No 175
>PRK06849 hypothetical protein; Provisional
Probab=56.07 E-value=95 Score=28.96 Aligned_cols=86 Identities=15% Similarity=0.133 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhcCCccceeeeeehhh------hcccccCCcceeecCCCCCCCCCCccChhhHHHHHHHhhhcCCceee
Q 040341 33 EGFELLKTAIAKGGYIGKIVIGMDVAA------SEFYDSKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHPIVSI 106 (251)
Q Consensus 33 eal~~i~~Ai~~aGy~~kI~iglD~Aa------se~~~~~~g~Y~l~~~~~~~d~~~~~s~~elid~~~~l~~~ypI~~I 106 (251)
.+|.++.. +.++|++ .+++|... |.+. + ..|.++ . ...+.++.++.+.++++++++-.|
T Consensus 16 ~~l~iar~-l~~~G~~---Vi~~d~~~~~~~~~s~~~-d--~~~~~p--~------p~~d~~~~~~~L~~i~~~~~id~v 80 (389)
T PRK06849 16 AALELARL-FHNAGHT---VILADSLKYPLSRFSRAV-D--GFYTIP--S------PRWDPDAYIQALLSIVQRENIDLL 80 (389)
T ss_pred HHHHHHHH-HHHCCCE---EEEEeCCchHHHHHHHhh-h--heEEeC--C------CCCCHHHHHHHHHHHHHHcCCCEE
Confidence 56776665 5578986 22333321 2222 2 345553 1 124567788888899998886555
Q ss_pred cCCCCcccHHHHHHHHhhhCCceEEEccc
Q 040341 107 EDPFDQDDWEHHAELTGKIGRHVQIVGDD 135 (251)
Q Consensus 107 EDP~~e~D~~~~~~l~~~lg~~~~ivgDd 135 (251)
. |..++. .--++...++...+.+++.+
T Consensus 81 I-P~~e~~-~~~a~~~~~l~~~~~v~~~~ 107 (389)
T PRK06849 81 I-PTCEEV-FYLSHAKEELSAYCEVLHFD 107 (389)
T ss_pred E-ECChHH-HhHHhhhhhhcCCcEEEcCC
Confidence 4 444322 22223333443345554443
No 176
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=55.73 E-value=56 Score=31.26 Aligned_cols=75 Identities=21% Similarity=0.290 Sum_probs=56.4
Q ss_pred cccHHHHHHHHhhhCCceEEEc--ccccccCHHHHHHHHhccCcceeEee--ccccccHHHHHHHHHHHHHcCCcEEEec
Q 040341 112 QDDWEHHAELTGKIGRHVQIVG--DDLLVTNPKRVEKAIKEKTCNALLLK--VNQIGSVTESIEAVKMSKRAGWGVMASH 187 (251)
Q Consensus 112 e~D~~~~~~l~~~lg~~~~ivg--Ddl~vtn~~~i~~~i~~~a~n~ilIK--~nqiGtlte~l~~~~~a~~~g~~~ivs~ 187 (251)
.....-|..+.++.|-++.++. |+ -.-..+.+++.+. +..+.+.|- -|-.|+++..-+++++|+++|..++|-+
T Consensus 122 ~sn~~pw~~~~~~~Ga~v~~i~~~~~-g~~~~~~~~~~i~-~~Tklvais~vSn~tG~~~pv~~I~~la~~~ga~v~VDa 199 (405)
T COG0520 122 HSNIVPWQELAKRTGAKVRVIPLDDD-GLLDLDALEKLIT-PKTKLVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDA 199 (405)
T ss_pred hhhHHHHHHHHHhcCcEEEEEecCCC-CCcCHHHHHHhcC-CCceEEEEECccccccccchHHHHHHHHHHcCCEEEEEC
Confidence 4678999999999887777776 44 4456777777443 344455444 3678999999999999999998888765
Q ss_pred C
Q 040341 188 R 188 (251)
Q Consensus 188 r 188 (251)
-
T Consensus 200 a 200 (405)
T COG0520 200 A 200 (405)
T ss_pred c
Confidence 4
No 177
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=55.54 E-value=1.5e+02 Score=26.15 Aligned_cols=92 Identities=16% Similarity=0.184 Sum_probs=68.2
Q ss_pred cChhhHHHHHHHhhhcCCceeecCCCCcccHH-HHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeecccc
Q 040341 85 VSGDGLKNVYRSFISDHPIVSIEDPFDQDDWE-HHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQI 163 (251)
Q Consensus 85 ~s~~elid~~~~l~~~ypI~~IEDP~~e~D~~-~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqi 163 (251)
-+++|-+..-..|++. +|-.||=||.-.++. .-..+.+..+ ++ ++|=- +|.|++++++++..|+- +++.||=
T Consensus 22 ~~~e~a~~~a~Ali~g-Gi~~IEITl~sp~a~e~I~~l~~~~p-~~-lIGAG-TVL~~~q~~~a~~aGa~--fiVsP~~- 94 (211)
T COG0800 22 DDVEEALPLAKALIEG-GIPAIEITLRTPAALEAIRALAKEFP-EA-LIGAG-TVLNPEQARQAIAAGAQ--FIVSPGL- 94 (211)
T ss_pred CCHHHHHHHHHHHHHc-CCCeEEEecCCCCHHHHHHHHHHhCc-cc-EEccc-cccCHHHHHHHHHcCCC--EEECCCC-
Confidence 4677888877776554 888999999977764 5566677775 45 77877 79999999999986543 6677763
Q ss_pred ccHHHHHHHHHHHHHcCCcEEEecC
Q 040341 164 GSVTESIEAVKMSKRAGWGVMASHR 188 (251)
Q Consensus 164 Gtlte~l~~~~~a~~~g~~~ivs~r 188 (251)
.-++++.|..+|+.++=|..
T Consensus 95 -----~~ev~~~a~~~~ip~~PG~~ 114 (211)
T COG0800 95 -----NPEVAKAANRYGIPYIPGVA 114 (211)
T ss_pred -----CHHHHHHHHhCCCcccCCCC
Confidence 23667777888888777775
No 178
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=55.46 E-value=55 Score=31.15 Aligned_cols=110 Identities=18% Similarity=0.216 Sum_probs=66.0
Q ss_pred ccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeecc---ccccHHHHHHHHHHHHH---cCCcEEEe
Q 040341 113 DDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVN---QIGSVTESIEAVKMSKR---AGWGVMAS 186 (251)
Q Consensus 113 ~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~n---qiGtlte~l~~~~~a~~---~g~~~ivs 186 (251)
-+|+..+.|.+.. ++||+--. |.++++++++++.| +++|.+.-+ |..+.--+++++..+.+ ..+.++++
T Consensus 211 ~tW~di~wlr~~~--~~PiivKg--V~~~~dA~~a~~~G-vd~I~VsnhGGrqld~~~~t~~~L~ei~~av~~~~~vi~d 285 (367)
T PLN02493 211 LSWKDVQWLQTIT--KLPILVKG--VLTGEDARIAIQAG-AAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLD 285 (367)
T ss_pred CCHHHHHHHHhcc--CCCEEeec--CCCHHHHHHHHHcC-CCEEEECCCCCCCCCCchhHHHHHHHHHHHhCCCCeEEEe
Confidence 3788888888887 68888887 46899999999886 556665432 33333344555543322 34788888
Q ss_pred cCCCCCCchhHhhhhhhcccCccccCCCC-------chhHHHHhhHHHHHH
Q 040341 187 HRSGETEDTFIADLSVGLATGQIKTGAPC-------RSERLAKYNQLLRIE 230 (251)
Q Consensus 187 ~rsgEt~d~~iadLAva~~~~~ik~G~~~-------r~Er~aKyN~llrie 230 (251)
.. -.+.-+.+- |+++|+..+-.|.|. +.+.+.++=++|+-|
T Consensus 286 GG-Ir~G~Dv~K--ALALGA~aV~iGr~~l~~l~~~G~~gv~~~l~~l~~e 333 (367)
T PLN02493 286 GG-VRRGTDVFK--ALALGASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDE 333 (367)
T ss_pred CC-cCcHHHHHH--HHHcCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 75 233322222 455566666555442 445565655555543
No 179
>PRK09261 phospho-2-dehydro-3-deoxyheptonate aldolase; Validated
Probab=55.33 E-value=1.9e+02 Score=27.41 Aligned_cols=139 Identities=17% Similarity=0.147 Sum_probs=83.5
Q ss_pred CCCCcHHHHHHHHHHHHhcCCc--cceeeeeehhhhcccccCCcceeecCCCC--CCCCCCccChhhHHHHHHHh---hh
Q 040341 27 NIQESYEGFELLKTAIAKGGYI--GKIVIGMDVAASEFYDSKDKTYDLNFKEE--NNDGSQKVSGDGLKNVYRSF---IS 99 (251)
Q Consensus 27 ~~~~~eeal~~i~~Ai~~aGy~--~kI~iglD~Aase~~~~~~g~Y~l~~~~~--~~d~~~~~s~~elid~~~~l---~~ 99 (251)
.+.+.+++++.... +++.|-+ .++.+-+-.- |++..+. |. |++. +++.+.++.-++=+.+.+++ +.
T Consensus 62 SIed~e~a~eyA~~-Lk~l~~~~~d~l~ivmR~y---~~KPRTs-~g--~kGl~~DP~ldgs~~i~~GL~~~R~ll~~~~ 134 (349)
T PRK09261 62 SIHDPKAALEYARR-LAKLREELKDKLEIVMRVY---FEKPRTT-VG--WKGLINDPDLDGSFDINDGLRIARKLLLDIN 134 (349)
T ss_pred cCCCHHHHHHHHHH-HHHHHhhhhcceEEEEEec---cccCCCC-CC--CcCCCcCcCccccccHHHHHHHHHHHHHHHH
Confidence 68888999988777 4455543 3444444432 3333222 32 3332 22344566656666777776 47
Q ss_pred cCCceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeeccccccHHHHHHHHHHHHHc
Q 040341 100 DHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRA 179 (251)
Q Consensus 100 ~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqiGtlte~l~~~~~a~~~ 179 (251)
++++-..-+-++....+-.+.+ + ..--+|=. ++.|-...+.+- +..-.|++|=+.-|++++++.++.-|++-
T Consensus 135 e~GlpvatE~ld~~~~~y~~dl---v--s~~~IGAR-t~esq~hr~~as--g~~~PVg~Kng~~g~i~~~l~Ai~aa~~~ 206 (349)
T PRK09261 135 ELGLPAATEFLDPITPQYIADL---I--SWGAIGAR-TTESQVHRELAS--GLSCPVGFKNGTDGNIKVAIDAIIAASAP 206 (349)
T ss_pred HhCCCeEEEecccccHHHHHhh---c--ceeeeccc-hhcCHHHHHHhc--CCCCeeEecCCCCCCHHHHHhHHHHHhCC
Confidence 7664444444444444444433 4 44566666 567755555443 46678999999999999999999877654
Q ss_pred C
Q 040341 180 G 180 (251)
Q Consensus 180 g 180 (251)
.
T Consensus 207 H 207 (349)
T PRK09261 207 H 207 (349)
T ss_pred c
Confidence 3
No 180
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=54.39 E-value=1.2e+02 Score=27.92 Aligned_cols=145 Identities=21% Similarity=0.209 Sum_probs=87.0
Q ss_pred cHH-HHHHHHHHHHhcCCcc-ceeeeeehhhhcccccCCcceeecCCCCCCCCCCccChhhHHHHHHHhhhcC--Cc-ee
Q 040341 31 SYE-GFELLKTAIAKGGYIG-KIVIGMDVAASEFYDSKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDH--PI-VS 105 (251)
Q Consensus 31 ~ee-al~~i~~Ai~~aGy~~-kI~iglD~Aase~~~~~~g~Y~l~~~~~~~d~~~~~s~~elid~~~~l~~~y--pI-~~ 105 (251)
.++ +++++.+-+.+.|+++ -|.+|-+. +-|......| .+...+.+++.++ |+ +.
T Consensus 64 vk~n~~e~l~~el~~~~~k~~~i~is~~T---Dpyqp~E~~~------------------~ltR~ilei~~~~~~~v~I~ 122 (297)
T COG1533 64 VKENLLELLERELRKPGPKRTVIAISSVT---DPYQPIEKEY------------------RLTRKILEILLKYGFPVSIV 122 (297)
T ss_pred echhHHHHHHHHHhhccCCceEEEEecCC---CCCCcchHHH------------------HHHHHHHHHHHHcCCcEEEE
Confidence 344 8999999887778875 46665332 1221111111 2223333444444 43 34
Q ss_pred ecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHH-HHHHHHhccCcceeEeeccccccHHHHHHHHHHHHHcCCcEE
Q 040341 106 IEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPK-RVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAGWGVM 184 (251)
Q Consensus 106 IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~-~i~~~i~~~a~n~ilIK~nqiGtlte~l~~~~~a~~~g~~~i 184 (251)
=--|+-..|++-+.++..+-.-++.+ ++|+.+ .+.+.++=++. ++.+=+++++.+.++|++++
T Consensus 123 TKS~lv~RDld~l~~~~~~~~v~V~~-----Sitt~d~~l~k~~EP~ap-----------sp~~Ri~al~~l~eaGi~~~ 186 (297)
T COG1533 123 TKSALVLRDLDLLLELAERGKVRVAV-----SITTLDEELAKILEPRAP-----------SPEERLEALKELSEAGIPVG 186 (297)
T ss_pred ECCcchhhhHHHHHhhhhccceEEEE-----EeecCcHHHHHhcCCCCc-----------CHHHHHHHHHHHHHCCCeEE
Confidence 47788889999999988773114433 666654 37777765544 66899999999999999998
Q ss_pred EecCC---CCCC--chhHhhhhhhcccCccccC
Q 040341 185 ASHRS---GETE--DTFIADLSVGLATGQIKTG 212 (251)
Q Consensus 185 vs~rs---gEt~--d~~iadLAva~~~~~ik~G 212 (251)
|.-+- +.+. --.+.+-|...++.++-.+
T Consensus 187 v~v~PIiP~~~d~e~e~~l~~~~~ag~~~v~~~ 219 (297)
T COG1533 187 LFVAPIIPGLNDEELERILEAAAEAGARVVVYG 219 (297)
T ss_pred EEEecccCCCChHHHHHHHHHHHHcCCCeeEee
Confidence 77653 3332 2334444455555554443
No 181
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=54.34 E-value=1.1e+02 Score=26.36 Aligned_cols=39 Identities=10% Similarity=0.036 Sum_probs=25.0
Q ss_pred cHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcce
Q 040341 114 DWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNA 155 (251)
Q Consensus 114 D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ 155 (251)
+++-.+++.+.+ .++|.-+. .+.++++++++.+.++...
T Consensus 60 ~~~~i~~i~~~~--~~pi~~gg-GI~~~ed~~~~~~~Ga~~v 98 (230)
T TIGR00007 60 NLPVIKKIVRET--GVPVQVGG-GIRSLEDVEKLLDLGVDRV 98 (230)
T ss_pred cHHHHHHHHHhc--CCCEEEeC-CcCCHHHHHHHHHcCCCEE
Confidence 556667776666 34444444 6788888888887765543
No 182
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=54.07 E-value=1.6e+02 Score=26.30 Aligned_cols=96 Identities=21% Similarity=0.328 Sum_probs=54.4
Q ss_pred ChhhHHHHHHHhhh--cCC-ceeecCCCCcccHHHHHHHHhhhCC-ceEE---------EcccccccCHHHHHH---HHh
Q 040341 86 SGDGLKNVYRSFIS--DHP-IVSIEDPFDQDDWEHHAELTGKIGR-HVQI---------VGDDLLVTNPKRVEK---AIK 149 (251)
Q Consensus 86 s~~elid~~~~l~~--~yp-I~~IEDP~~e~D~~~~~~l~~~lg~-~~~i---------vgDdl~vtn~~~i~~---~i~ 149 (251)
..+++++.+.+... .-| +++|- ....+||..-++..+..|- -+.| -|++ +..+++.+.+ ++.
T Consensus 73 g~~~~~~~~~~~~~~~~~p~ivsi~-g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~-~~~~~~~~~eiv~~vr 150 (296)
T cd04740 73 GVEAFLEELLPWLREFGTPVIASIA-GSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMA-FGTDPEAVAEIVKAVK 150 (296)
T ss_pred CHHHHHHHHHHHhhcCCCcEEEEEe-cCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCccc-ccCCHHHHHHHHHHHH
Confidence 34566666665443 346 45553 3334555555544444432 2222 0444 4567766543 444
Q ss_pred ccCcceeEeeccccccHHHHHHHHHHHHHcCCcEEE
Q 040341 150 EKTCNALLLKVNQIGSVTESIEAVKMSKRAGWGVMA 185 (251)
Q Consensus 150 ~~a~n~ilIK~nqiGtlte~l~~~~~a~~~g~~~iv 185 (251)
...--.+.+|++ ..++++.++++.+.++|...++
T Consensus 151 ~~~~~Pv~vKl~--~~~~~~~~~a~~~~~~G~d~i~ 184 (296)
T cd04740 151 KATDVPVIVKLT--PNVTDIVEIARAAEEAGADGLT 184 (296)
T ss_pred hccCCCEEEEeC--CCchhHHHHHHHHHHcCCCEEE
Confidence 333347889976 3567889999999999987543
No 183
>PLN02656 tyrosine transaminase
Probab=54.03 E-value=1.9e+02 Score=27.07 Aligned_cols=149 Identities=12% Similarity=0.068 Sum_probs=80.7
Q ss_pred CCCcHHHHHHHHHHHHh---cCCcc-ceeeeeehhhhcccccCCcceeecCCCCCCCCCCcc--ChhhHHHHHHHhh-hc
Q 040341 28 IQESYEGFELLKTAIAK---GGYIG-KIVIGMDVAASEFYDSKDKTYDLNFKEENNDGSQKV--SGDGLKNVYRSFI-SD 100 (251)
Q Consensus 28 ~~~~eeal~~i~~Ai~~---aGy~~-kI~iglD~Aase~~~~~~g~Y~l~~~~~~~d~~~~~--s~~elid~~~~l~-~~ 100 (251)
+..++...+.+.+++.. .+|.+ .-...+--+..+++.. .|.+.... .+-.. ...+.+......+ +.
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~---~~g~~~~~----~~i~~t~G~~~al~~~~~~l~~~ 119 (409)
T PLN02656 47 FHTTHVAQEAVVDALQSNKFNGYAPTVGLPQARRAIAEYLSR---DLPYKLSL----DDVFITSGCTQAIDVALSMLARP 119 (409)
T ss_pred CCCCHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHH---hcCCCCCc----ccEEEeCChHHHHHHHHHHHhCC
Confidence 55568889988888864 25643 1112222244455432 12111100 01111 2345555444433 33
Q ss_pred CCceeecCCCCcccHHHHHHHHhhhCCceEEEc---ccccccCHHHHHHHHhccCcceeEeecc-ccccH---HHHHHHH
Q 040341 101 HPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVG---DDLLVTNPKRVEKAIKEKTCNALLLKVN-QIGSV---TESIEAV 173 (251)
Q Consensus 101 ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivg---Ddl~vtn~~~i~~~i~~~a~n~ilIK~n-qiGtl---te~l~~~ 173 (251)
=.-|.+++|-.. .+....+..|-++..+- ++-+.-+++.+++.+..+..-.++.-|| -.|++ .+..+++
T Consensus 120 gd~Vlv~~p~y~----~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~P~NPtG~~~s~~~~~~i~ 195 (409)
T PLN02656 120 GANILLPRPGFP----IYELCAAFRHLEVRYVDLLPEKGWEVDLDAVEALADQNTVALVIINPGNPCGNVYSYQHLKKIA 195 (409)
T ss_pred CCeEEEeCCCCC----cHHHHHHHcCCEEEEEeCCCcCCCCCCHHHHHHHhccCceEEEEECCCCCCCCCCCHHHHHHHH
Confidence 236888999763 23333333443443331 2224457888888887665556666675 34555 5788889
Q ss_pred HHHHHcCCcEEEec
Q 040341 174 KMSKRAGWGVMASH 187 (251)
Q Consensus 174 ~~a~~~g~~~ivs~ 187 (251)
++|+++|+.+++-.
T Consensus 196 ~~a~~~~~~ii~De 209 (409)
T PLN02656 196 ETAEKLKILVIADE 209 (409)
T ss_pred HHHHHcCCEEEEeh
Confidence 99999998776543
No 184
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=53.34 E-value=87 Score=30.33 Aligned_cols=116 Identities=11% Similarity=0.166 Sum_probs=66.1
Q ss_pred HHHHHHhhhc-CCceeecCC---CCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEee--cc---
Q 040341 91 KNVYRSFISD-HPIVSIEDP---FDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK--VN--- 161 (251)
Q Consensus 91 id~~~~l~~~-ypI~~IEDP---~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK--~n--- 161 (251)
.+....|++. ..++.| |. -.+.=++.-+++.++.. +++|+.- .|.+++.++.+++.|+ ++|-+= |+
T Consensus 226 ~~r~~~L~~aG~d~I~v-d~a~g~~~~~~~~i~~i~~~~~-~~~vi~G--~v~t~~~a~~l~~aGa-d~i~vg~g~G~~~ 300 (450)
T TIGR01302 226 KERAEALVKAGVDVIVI-DSSHGHSIYVIDSIKEIKKTYP-DLDIIAG--NVATAEQAKALIDAGA-DGLRVGIGPGSIC 300 (450)
T ss_pred HHHHHHHHHhCCCEEEE-ECCCCcHhHHHHHHHHHHHhCC-CCCEEEE--eCCCHHHHHHHHHhCC-CEEEECCCCCcCC
Confidence 4556666553 334443 33 22222333444545543 4665553 3678999999988754 444322 11
Q ss_pred --c------cccHHHHHHHHHHHHHcCCcEEEecCCCCCCchhHhhhhhhcccCccccCCC
Q 040341 162 --Q------IGSVTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAP 214 (251)
Q Consensus 162 --q------iGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d~~iadLAva~~~~~ik~G~~ 214 (251)
| +.+++-..++++.|++.+.++|....---.. + +=-|+++|+..+..|..
T Consensus 301 ~t~~~~~~g~p~~~~i~~~~~~~~~~~vpviadGGi~~~~-d--i~kAla~GA~~V~~G~~ 358 (450)
T TIGR01302 301 TTRIVAGVGVPQITAVYDVAEYAAQSGIPVIADGGIRYSG-D--IVKALAAGADAVMLGSL 358 (450)
T ss_pred ccceecCCCccHHHHHHHHHHHHhhcCCeEEEeCCCCCHH-H--HHHHHHcCCCEEEECch
Confidence 1 1245666778888899999998854322221 1 33466777888888876
No 185
>PHA01745 hypothetical protein
Probab=53.23 E-value=51 Score=30.23 Aligned_cols=101 Identities=15% Similarity=0.240 Sum_probs=68.0
Q ss_pred cceeecCCCCCCCCCCccChhhHHHHHHHhhhcCC-----ceeecCCCCcccHHHHHHHHhhhC--Cc-eEEEccccccc
Q 040341 68 KTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHP-----IVSIEDPFDQDDWEHHAELTGKIG--RH-VQIVGDDLLVT 139 (251)
Q Consensus 68 g~Y~l~~~~~~~d~~~~~s~~elid~~~~l~~~yp-----I~~IEDP~~e~D~~~~~~l~~~lg--~~-~~ivgDdl~vt 139 (251)
|.|++.. -|-..+.++.++.|+.+ +.+- +-++-||.++..++.|..|..+++ ++ +||+ + +-
T Consensus 42 GGYQil~------~gi~i~vd~V~ekYk~i-dA~~y~SLDiP~~~dp~d~kNf~~feyLy~~ve~~~~vIPVi--H--~Y 110 (306)
T PHA01745 42 GGYQIML------YNLKISVDDVLDKYKTY-NAYAFFSLDIPSIFEPLSRKNFEYFEYLYTKLEYIERIIPVI--H--LY 110 (306)
T ss_pred Cchhhhh------cCCCCCHHHHHHHHHhc-chhheeecCCCCcCCChhhhhHHHHHHHHHHhhcccceeeEE--e--ec
Confidence 7897753 34678999999999985 6431 223389999999999999999984 33 5554 1 22
Q ss_pred CHHHHHHHHhc------cCcceeEeeccccccHHHHHHHHHHHHHc
Q 040341 140 NPKRVEKAIKE------KTCNALLLKVNQIGSVTESIEAVKMSKRA 179 (251)
Q Consensus 140 n~~~i~~~i~~------~a~n~ilIK~nqiGtlte~l~~~~~a~~~ 179 (251)
+++.+.++++- ..+=+-+|=++.+|....++....++|+.
T Consensus 111 ~~e~l~~~ldfysqy~d~iAfGG~Vp~s~~~sr~~a~~~y~~vRk~ 156 (306)
T PHA01745 111 PVREVDEAIDFYSQYTDYIAFGGIVASSKLKILIYAFPWYYYIRKY 156 (306)
T ss_pred CHHHHHHHHHHHHhhhhhhhccccccHHhhhhHHHHHHHHHHHHHH
Confidence 66666655431 11112334455668888888888888773
No 186
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=53.17 E-value=94 Score=23.27 Aligned_cols=47 Identities=23% Similarity=0.297 Sum_probs=38.2
Q ss_pred cCHHHHHHHHhccCcceeEeeccccccHHHHHHHHHHHHHcCCcEEEec
Q 040341 139 TNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAGWGVMASH 187 (251)
Q Consensus 139 tn~~~i~~~i~~~a~n~ilIK~nqiGtlte~l~~~~~a~~~g~~~ivs~ 187 (251)
+..+.+.++++.+. +.++=||-=. ++.++.++.+.|+++|..++|+|
T Consensus 74 ~h~~~~~~~l~~g~-~v~~EKP~~~-~~~~~~~l~~~a~~~~~~~~Vg~ 120 (120)
T PF01408_consen 74 SHAEIAKKALEAGK-HVLVEKPLAL-TLEEAEELVEAAKEKGVKVMVGY 120 (120)
T ss_dssp GHHHHHHHHHHTTS-EEEEESSSSS-SHHHHHHHHHHHHHHTSCEEEE-
T ss_pred chHHHHHHHHHcCC-EEEEEcCCcC-CHHHHHHHHHHHHHhCCEEEEeC
Confidence 45677778888776 7777777653 99999999999999999999986
No 187
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=53.08 E-value=30 Score=32.20 Aligned_cols=76 Identities=20% Similarity=0.276 Sum_probs=56.0
Q ss_pred HHHHHHHHhhhCCceEEEcccccccC---HHHHHHHHhccCcceeEee-ccccccHHHHHHHHHHHHHcCCcEEEecCCC
Q 040341 115 WEHHAELTGKIGRHVQIVGDDLLVTN---PKRVEKAIKEKTCNALLLK-VNQIGSVTESIEAVKMSKRAGWGVMASHRSG 190 (251)
Q Consensus 115 ~~~~~~l~~~lg~~~~ivgDdl~vtn---~~~i~~~i~~~a~n~ilIK-~nqiGtlte~l~~~~~a~~~g~~~ivs~rsg 190 (251)
++......+++| ++.||.|. ++.. .+++...++....+..... ...--++....++++.+++.+..++|+-.-|
T Consensus 11 l~~l~~~l~~~g-r~lvVt~~-~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGGG 88 (366)
T PF00465_consen 11 LEELGEELKRLG-RVLVVTDP-SLSKSGLVDRVLDALEEAGIEVQVFDGVGPNPTLEDVDEAAEQARKFGADCIIAIGGG 88 (366)
T ss_dssp GGGHHHHHHCTT-EEEEEEEH-HHHHHTHHHHHHHHHHHTTCEEEEEEEESSS-BHHHHHHHHHHHHHTTSSEEEEEESH
T ss_pred HHHHHHHHHhcC-CEEEEECc-hHHhCccHHHHHHHHhhCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 444555566667 88888888 4443 4777777766666776655 6777899999999999999999999998644
Q ss_pred CC
Q 040341 191 ET 192 (251)
Q Consensus 191 Et 192 (251)
-+
T Consensus 89 S~ 90 (366)
T PF00465_consen 89 SV 90 (366)
T ss_dssp HH
T ss_pred Cc
Confidence 33
No 188
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=52.93 E-value=60 Score=30.04 Aligned_cols=87 Identities=20% Similarity=0.256 Sum_probs=59.2
Q ss_pred CceeecCCCCcccHHHHHHHHhhhCCceEEEc-ccccccCHHHHHHHHhccCcceeEee-c-cccccHHHHHHHHHHHHH
Q 040341 102 PIVSIEDPFDQDDWEHHAELTGKIGRHVQIVG-DDLLVTNPKRVEKAIKEKTCNALLLK-V-NQIGSVTESIEAVKMSKR 178 (251)
Q Consensus 102 pI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivg-Ddl~vtn~~~i~~~i~~~a~n~ilIK-~-nqiGtlte~l~~~~~a~~ 178 (251)
+-+.+-+|=+..-+..|..+.+..|-++..+- |+-...+++.+++.+..+ ...+.+- + |..|++...-+++++|++
T Consensus 109 ~~vl~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~~-~~lv~~~~~~~~tG~~~~~~~i~~~~~~ 187 (403)
T TIGR01979 109 DEIVISEMEHHANIVPWQLLAERTGATLKFIPLDDDGTLDLDDLEKLLTEK-TKLVAITHVSNVLGTVNPVEEIAKLAHQ 187 (403)
T ss_pred CEEEECcchhhHHHHHHHHHHHhcCcEEEEEecCCCCCCCHHHHHHHhccC-CeEEEEEcccccccccCCHHHHHHHHHH
Confidence 34566666555567788888877776655552 332445788999888654 3444443 2 567888888888999999
Q ss_pred cCCcEEEecCC
Q 040341 179 AGWGVMASHRS 189 (251)
Q Consensus 179 ~g~~~ivs~rs 189 (251)
+|+.++|-.-.
T Consensus 188 ~~~~~ivD~a~ 198 (403)
T TIGR01979 188 VGAKVLVDGAQ 198 (403)
T ss_pred cCCEEEEEchh
Confidence 99988776543
No 189
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=52.74 E-value=94 Score=27.19 Aligned_cols=76 Identities=18% Similarity=0.328 Sum_probs=52.3
Q ss_pred ceEEEcccccccC----HHHHHHHHhccCcceeEeecccccc---HHHHHHHHHHHHHcCCcEEEecCCCCCCchhHhhh
Q 040341 128 HVQIVGDDLLVTN----PKRVEKAIKEKTCNALLLKVNQIGS---VTESIEAVKMSKRAGWGVMASHRSGETEDTFIADL 200 (251)
Q Consensus 128 ~~~ivgDdl~vtn----~~~i~~~i~~~a~n~ilIK~nqiGt---lte~l~~~~~a~~~g~~~ivs~rsgEt~d~~iadL 200 (251)
++.+|-|+..+.+ .+.++++++.| ...+-++.=...+ .-.+.++..+|+++|...+|-.+ .||
T Consensus 7 ~lylvt~~~~~~~~~~~~~~ve~al~~G-v~~vQlR~K~~~~~~~~~~a~~~~~lc~~~~v~liINd~---------~dl 76 (211)
T COG0352 7 RLYLVTDRPLIYDGVDLLEWVEAALKGG-VTAVQLREKDLSDEEYLALAEKLRALCQKYGVPLIINDR---------VDL 76 (211)
T ss_pred ceEEEcCCccccccchhHHHHHHHHhCC-CeEEEEecCCCChHHHHHHHHHHHHHHHHhCCeEEecCc---------HHH
Confidence 5667766544433 46777777655 4555555433222 45567888899999999999998 788
Q ss_pred hhhcccCccccCC
Q 040341 201 SVGLATGQIKTGA 213 (251)
Q Consensus 201 Ava~~~~~ik~G~ 213 (251)
|.+.++.-+-.|.
T Consensus 77 A~~~~AdGVHlGq 89 (211)
T COG0352 77 ALAVGADGVHLGQ 89 (211)
T ss_pred HHhCCCCEEEcCC
Confidence 8888777766664
No 190
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=52.30 E-value=53 Score=30.30 Aligned_cols=20 Identities=10% Similarity=-0.150 Sum_probs=11.3
Q ss_pred CCCchhHHHHhhHHHHHHHH
Q 040341 213 APCRSERLAKYNQLLRIEEE 232 (251)
Q Consensus 213 ~~~r~Er~aKyN~llrie~~ 232 (251)
.|...|+..-+-+.++...+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~ 268 (321)
T PRK10415 249 PLPLAEVKRLLCAHVRELHD 268 (321)
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 45556776666665554433
No 191
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=52.10 E-value=1.9e+02 Score=26.54 Aligned_cols=126 Identities=10% Similarity=0.193 Sum_probs=77.5
Q ss_pred CccChhhHHHHHHHhhhcCCc--eee--cCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEe
Q 040341 83 QKVSGDGLKNVYRSFISDHPI--VSI--EDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLL 158 (251)
Q Consensus 83 ~~~s~~elid~~~~l~~~ypI--~~I--EDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilI 158 (251)
..++.+++.+.+.++ .+.++ +.| =+||-..|+..+-+..++.|-.+.|+-.-. .-+.+.+++..+.+ .+.|.|
T Consensus 35 ~~l~~e~~~~ii~~~-~~~g~~~v~~~GGEPll~~~~~~ii~~~~~~g~~~~l~TNG~-ll~~e~~~~L~~~g-~~~v~i 111 (358)
T TIGR02109 35 AELTTEEWTDVLTQA-AELGVLQLHFSGGEPLARPDLVELVAHARRLGLYTNLITSGV-GLTEARLDALADAG-LDHVQL 111 (358)
T ss_pred CCCCHHHHHHHHHHH-HhcCCcEEEEeCccccccccHHHHHHHHHHcCCeEEEEeCCc-cCCHHHHHHHHhCC-CCEEEE
Confidence 457888877766664 55553 334 379988888776666666554555554432 22455665544432 334444
Q ss_pred ecc-----------c-cccHHHHHHHHHHHHHcCCcEEEecCCC-CC--CchhHhhhhhhcccCcccc
Q 040341 159 KVN-----------Q-IGSVTESIEAVKMSKRAGWGVMASHRSG-ET--EDTFIADLSVGLATGQIKT 211 (251)
Q Consensus 159 K~n-----------q-iGtlte~l~~~~~a~~~g~~~ivs~rsg-Et--~d~~iadLAva~~~~~ik~ 211 (251)
.+. . -|+...+++.++.++++|+.+.|..... .+ +-.-+++++..++...+..
T Consensus 112 Sldg~~~e~~d~~rg~~g~f~~v~~~i~~l~~~g~~v~v~~vv~~~N~~~l~~~~~~~~~lg~~~i~~ 179 (358)
T TIGR02109 112 SFQGVDEALADRIAGYKNAFEQKLAMARAVKAAGLPLTLNFVIHRHNIDQIPEIIELAIELGADRVEL 179 (358)
T ss_pred eCcCCCHHHHHHhcCCccHHHHHHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHHHHHcCCCEEEE
Confidence 432 1 2567888999999999999886654222 22 3345688888888776543
No 192
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=51.97 E-value=2e+02 Score=26.54 Aligned_cols=100 Identities=17% Similarity=0.125 Sum_probs=56.1
Q ss_pred hhhHHHHHHHhhh-cCC-ceeecCCCC----cccHHHHHHHHhhhCCceEEEcccccc---------cCHHHHH---HHH
Q 040341 87 GDGLKNVYRSFIS-DHP-IVSIEDPFD----QDDWEHHAELTGKIGRHVQIVGDDLLV---------TNPKRVE---KAI 148 (251)
Q Consensus 87 ~~elid~~~~l~~-~yp-I~~IEDP~~----e~D~~~~~~l~~~lg~~~~ivgDdl~v---------tn~~~i~---~~i 148 (251)
.+..++.++++.. +.| |++|- ... ++-|+.|.++.++++..+-.+-=.+++ .+++.+. +++
T Consensus 114 ~~~~~~~l~~~~~~~~plivsi~-g~~~~~~~~~~~d~~~~~~~~~~~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av 192 (327)
T cd04738 114 ADAVAKRLKKRRPRGGPLGVNIG-KNKDTPLEDAVEDYVIGVRKLGPYADYLVVNVSSPNTPGLRDLQGKEALRELLTAV 192 (327)
T ss_pred HHHHHHHHHHhccCCCeEEEEEe-CCCCCcccccHHHHHHHHHHHHhhCCEEEEECCCCCCCccccccCHHHHHHHHHHH
Confidence 4455555554322 456 66772 111 345888888777764211111111122 2334443 333
Q ss_pred hccCc-----ceeEeeccccccHHHHHHHHHHHHHcCCcEEEec
Q 040341 149 KEKTC-----NALLLKVNQIGSVTESIEAVKMSKRAGWGVMASH 187 (251)
Q Consensus 149 ~~~a~-----n~ilIK~nqiGtlte~l~~~~~a~~~g~~~ivs~ 187 (251)
..... -.+.+|++---+..+..++++.+.++|...++-+
T Consensus 193 ~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~ 236 (327)
T cd04738 193 KEERNKLGKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIAT 236 (327)
T ss_pred HHHHhhcccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEE
Confidence 33222 4799999755555688899999999999877644
No 193
>KOG2599 consensus Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme transport and metabolism]
Probab=51.79 E-value=50 Score=30.39 Aligned_cols=104 Identities=14% Similarity=0.200 Sum_probs=60.1
Q ss_pred CCccChhhHHHHHHHhhhcCCce--eecCCCCcc-c-----HHHHHHHHhhhCCce----EEEcccccccCHHHHHHHHh
Q 040341 82 SQKVSGDGLKNVYRSFISDHPIV--SIEDPFDQD-D-----WEHHAELTGKIGRHV----QIVGDDLLVTNPKRVEKAIK 149 (251)
Q Consensus 82 ~~~~s~~elid~~~~l~~~ypI~--~IEDP~~e~-D-----~~~~~~l~~~lg~~~----~ivgDdl~vtn~~~i~~~i~ 149 (251)
++..+.+|+.|+|..|..+.+.. .+=-++-.+ + .+-.++|.+.-+.-+ ||+||+=-.--|+.+--.-+
T Consensus 59 G~~~~~~eL~dL~egl~~nn~~~Y~~vLTGY~~n~~~l~~i~~iv~~lk~~np~~~wv~DPVmGDnG~lYV~eelipvYr 138 (308)
T KOG2599|consen 59 GQVLNEEELEDLYEGLLLNNLNKYDAVLTGYLPNVSFLQKIADIVKKLKKKNPNLTWVCDPVMGDNGRLYVPEELIPVYR 138 (308)
T ss_pred ccccCHHHHHHHHHHHhhccccccceeeeeccCChhHHHHHHHHHHHHHhcCCCeEEEeCccccCCccEeccHHHHHHHH
Confidence 56778888888888877654421 111122211 0 111223333322111 45677632223455444444
Q ss_pred ccCcc-eeEeeccc----------cccHHHHHHHHHHHHHcCCcEEE
Q 040341 150 EKTCN-ALLLKVNQ----------IGSVTESIEAVKMSKRAGWGVMA 185 (251)
Q Consensus 150 ~~a~n-~ilIK~nq----------iGtlte~l~~~~~a~~~g~~~iv 185 (251)
..... +-+|-||| |-|..++.++++.-++.|++.+|
T Consensus 139 ~~i~~ladiiTPNqFE~EiLtg~~I~t~eda~~a~~~lhq~~v~~vV 185 (308)
T KOG2599|consen 139 DLIIPLADIITPNQFEAEILTGMEIRTEEDAKRAVEKLHQKGVKTVV 185 (308)
T ss_pred HhhcchhhhcCCcchhhhhhcCCeeccHHHHHHHHHHHHHhCCCEEE
Confidence 44455 67888998 68999999999999999987754
No 194
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=51.36 E-value=1.6e+02 Score=25.23 Aligned_cols=48 Identities=8% Similarity=0.203 Sum_probs=32.6
Q ss_pred cCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEe
Q 040341 107 EDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLL 158 (251)
Q Consensus 107 EDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilI 158 (251)
+.....-||+...++.+.+ ++||+..- =+.++++++++.+. .++++++
T Consensus 171 ~g~~~g~~~~~i~~i~~~~--~ipvi~~G-Gi~~~~di~~~~~~-Ga~gv~v 218 (234)
T cd04732 171 DGTLSGPNFELYKELAAAT--GIPVIASG-GVSSLDDIKALKEL-GVAGVIV 218 (234)
T ss_pred CCccCCCCHHHHHHHHHhc--CCCEEEec-CCCCHHHHHHHHHC-CCCEEEE
Confidence 3344556899999999887 45555332 26789999998876 4555554
No 195
>PRK00979 tetrahydromethanopterin S-methyltransferase subunit H; Provisional
Probab=50.79 E-value=1.5e+02 Score=27.57 Aligned_cols=117 Identities=16% Similarity=0.175 Sum_probs=77.8
Q ss_pred ChhhHHHHHHHhhhcCCceeecCCCCcccHHHHHHHHhhhC--CceEEEcccccccCHHHHHHHHhc----c-----Ccc
Q 040341 86 SGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHHAELTGKIG--RHVQIVGDDLLVTNPKRVEKAIKE----K-----TCN 154 (251)
Q Consensus 86 s~~elid~~~~l~~~ypI~~IEDP~~e~D~~~~~~l~~~lg--~~~~ivgDdl~vtn~~~i~~~i~~----~-----a~n 154 (251)
-.++|++.-.++-++|++-++-|=|.++ -+...++-..+. ..+|+|-|- |+|+-++.|++. + .-|
T Consensus 53 ~Ae~Li~~~~elsd~tg~p~~~~v~~~~-~eam~k~I~~v~~~~d~Pl~IDS---t~p~a~eaaLk~~~e~G~~gR~IiN 128 (308)
T PRK00979 53 KAEALINRQEELSDKTGNPALLDVVGES-PEAMEKYIDFVSEITDLPFLIDS---TSPEARIAAAKYATELGLADRAIYN 128 (308)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEecCh-HHHHHHHHHHHHhcCCCCEEEeC---CCHHHHHHHHHHhhhcCCCCceEEE
Confidence 3667888888988999999888888843 355554443332 268999994 788888887765 2 234
Q ss_pred eeEeeccccccHHHHHHHHHHHHHcCCcEEEecCCCCCCchhHhhhhhhcccCccccCCCCchhHHHHhhH--------H
Q 040341 155 ALLLKVNQIGSVTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQ--------L 226 (251)
Q Consensus 155 ~ilIK~nqiGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d~~iadLAva~~~~~ik~G~~~r~Er~aKyN~--------l 226 (251)
+++.+..+ +.+.+++++|+..+|.=- +..+.|+.-+|++-..+ |
T Consensus 129 SIn~e~~~--------eel~llk~yg~aavIvLa--------------------~d~~~pt~e~Rl~i~~~~~~~~~~gl 180 (308)
T PRK00979 129 SINPSIEE--------EEIEALKESDIKAAIVLA--------------------FDPMDPSVEGRLKMLEEGGKGQDKGM 180 (308)
T ss_pred eccCCCCH--------HHHHHHHHhCCceEEEEE--------------------cCCCCCCHHHHHHHHHhccccchHHH
Confidence 44444333 335778899977443321 12245567788888888 7
Q ss_pred HHHHHHhC
Q 040341 227 LRIEEELG 234 (251)
Q Consensus 227 lrie~~l~ 234 (251)
+.+.++.|
T Consensus 181 l~~a~~~G 188 (308)
T PRK00979 181 LPLAEEAG 188 (308)
T ss_pred HHHHHHcC
Confidence 88877766
No 196
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=50.43 E-value=1.5e+02 Score=24.69 Aligned_cols=118 Identities=17% Similarity=0.125 Sum_probs=65.6
Q ss_pred ChhhHHHHHHHhhhcCCceeecC--CCCc-ccHHHHHHHHhhhCCceEEEcccccccCHH--HHHHHHhccCcceeEeec
Q 040341 86 SGDGLKNVYRSFISDHPIVSIED--PFDQ-DDWEHHAELTGKIGRHVQIVGDDLLVTNPK--RVEKAIKEKTCNALLLKV 160 (251)
Q Consensus 86 s~~elid~~~~l~~~ypI~~IED--P~~e-~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~--~i~~~i~~~a~n~ilIK~ 160 (251)
+.++..+..+.+ .++ +..||= ||-. .-.+.-+.+.+... ..+|.+|- .+.++. .++.+.+.| ++.+++-.
T Consensus 11 ~~~~~~~~~~~l-~~~-i~~ieig~~~~~~~g~~~i~~i~~~~~-~~~i~~~~-~v~~~~~~~~~~~~~aG-ad~i~~h~ 85 (202)
T cd04726 11 DLEEALELAKKV-PDG-VDIIEAGTPLIKSEGMEAVRALREAFP-DKIIVADL-KTADAGALEAEMAFKAG-ADIVTVLG 85 (202)
T ss_pred CHHHHHHHHHHh-hhc-CCEEEcCCHHHHHhCHHHHHHHHHHCC-CCEEEEEE-EeccccHHHHHHHHhcC-CCEEEEEe
Confidence 455666666664 444 666776 4421 11455556655533 56777773 566664 345555444 55555542
Q ss_pred cccccHHHHHHHHHHHHHcCCcEEEecCCCCCCchhHhhhhhhcccCccccC
Q 040341 161 NQIGSVTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLATGQIKTG 212 (251)
Q Consensus 161 nqiGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d~~iadLAva~~~~~ik~G 212 (251)
.. +....-++++.++++|+.+++..-...|....+. ++..++.+++.+
T Consensus 86 -~~-~~~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~--~~~~~~d~v~~~ 133 (202)
T cd04726 86 -AA-PLSTIKKAVKAAKKYGKEVQVDLIGVEDPEKRAK--LLKLGVDIVILH 133 (202)
T ss_pred -eC-CHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHH--HHHCCCCEEEEc
Confidence 11 2223455777888899999875222344444433 666677777763
No 197
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=50.04 E-value=57 Score=28.69 Aligned_cols=96 Identities=16% Similarity=0.132 Sum_probs=55.0
Q ss_pred ccHHHHHHHHhhhC---CceEEEcccccccCHHHHHHHHhc-cCcceeEeeccccccHHHHHHHHHHHHHcCCcEEEecC
Q 040341 113 DDWEHHAELTGKIG---RHVQIVGDDLLVTNPKRVEKAIKE-KTCNALLLKVNQIGSVTESIEAVKMSKRAGWGVMASHR 188 (251)
Q Consensus 113 ~D~~~~~~l~~~lg---~~~~ivgDdl~vtn~~~i~~~i~~-~a~n~ilIK~nqiGtlte~l~~~~~a~~~g~~~ivs~r 188 (251)
-..+.|.+|.+.+. -++.++|..- ..+.++...+. +..+.+++- ++. ++.|+..+++.|. .+||.
T Consensus 137 w~~~~~~~l~~~l~~~~~~ivl~g~~~---e~~~~~~i~~~~~~~~~~~~~-~~~-~l~e~~~li~~~~-----l~I~~- 205 (279)
T cd03789 137 WPAERFAALADRLLARGARVVLTGGPA---ERELAEEIAAALGGPRVVNLA-GKT-SLRELAALLARAD-----LVVTN- 205 (279)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEechh---hHHHHHHHHHhcCCCccccCc-CCC-CHHHHHHHHHhCC-----EEEee-
Confidence 34467888877763 2344444321 12222222221 122333332 332 7888777766543 77776
Q ss_pred CCCCCchhHhhhhhhcccCccccCCCCchhHHHHhh
Q 040341 189 SGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYN 224 (251)
Q Consensus 189 sgEt~d~~iadLAva~~~~~ik~G~~~r~Er~aKyN 224 (251)
|+..+|||.+++...+-.=++...++..-|+
T Consensus 206 -----Dsg~~HlA~a~~~p~i~l~g~~~~~~~~p~~ 236 (279)
T cd03789 206 -----DSGPMHLAAALGTPTVALFGPTDPARTGPPG 236 (279)
T ss_pred -----CCHHHHHHHHcCCCEEEEECCCCccccCCCC
Confidence 4678999999999887776676666655554
No 198
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=49.92 E-value=99 Score=28.88 Aligned_cols=105 Identities=18% Similarity=0.351 Sum_probs=62.5
Q ss_pred ccChhhHHHHHHHhhhcCCc-----eeec-CC--CCcccHHHHHHHHhhhCC-ceEEEcccccccCHHHHHHHHhccCcc
Q 040341 84 KVSGDGLKNVYRSFISDHPI-----VSIE-DP--FDQDDWEHHAELTGKIGR-HVQIVGDDLLVTNPKRVEKAIKEKTCN 154 (251)
Q Consensus 84 ~~s~~elid~~~~l~~~ypI-----~~IE-DP--~~e~D~~~~~~l~~~lg~-~~~ivgDdl~vtn~~~i~~~i~~~a~n 154 (251)
.++++++.+++..+-+.+++ +++| .| +.++.++.|++ .|- ++.| |=+. .+.+.++
T Consensus 72 ~l~~~~l~~ll~~i~~~~~~~~~~e~t~e~~p~~i~~e~l~~l~~----~G~~rvsl-GvQS--~~~~~L~--------- 135 (375)
T PRK05628 72 LLGAEGLARVLDAVRDTFGLAPGAEVTTEANPESTSPEFFAALRA----AGFTRVSL-GMQS--AAPHVLA--------- 135 (375)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHH----cCCCEEEE-eccc--CCHHHHH---------
Confidence 46678877766664344554 3555 45 33333433333 342 3433 3221 1233222
Q ss_pred eeEeeccccccHHHHHHHHHHHHHcCCc-E----EEecCCCCCCchhHhhhhh--hcccCcc
Q 040341 155 ALLLKVNQIGSVTESIEAVKMSKRAGWG-V----MASHRSGETEDTFIADLSV--GLATGQI 209 (251)
Q Consensus 155 ~ilIK~nqiGtlte~l~~~~~a~~~g~~-~----ivs~rsgEt~d~~iadLAv--a~~~~~i 209 (251)
.+++..+..+++++++.++++|+. + |+|. .|+|.+++..+|-. .++..++
T Consensus 136 ----~l~R~~s~~~~~~a~~~l~~~g~~~v~~dli~Gl-Pgqt~~~~~~tl~~~~~l~~~~i 192 (375)
T PRK05628 136 ----VLDRTHTPGRAVAAAREARAAGFEHVNLDLIYGT-PGESDDDWRASLDAALEAGVDHV 192 (375)
T ss_pred ----HcCCCCCHHHHHHHHHHHHHcCCCcEEEEEeccC-CCCCHHHHHHHHHHHHhcCCCEE
Confidence 467778999999999999999998 4 4444 58999988776554 4455544
No 199
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=49.79 E-value=2e+02 Score=26.72 Aligned_cols=117 Identities=14% Similarity=0.097 Sum_probs=74.3
Q ss_pred hHHHHHHHhhhcCCceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEe-ecc-ccccH
Q 040341 89 GLKNVYRSFISDHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLL-KVN-QIGSV 166 (251)
Q Consensus 89 elid~~~~l~~~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilI-K~n-qiGtl 166 (251)
+.+.....++..=.-+.+.+|....-+..|....++.|-++.. -| ..+++.+++++..+ ...|.+ -|| -.+.+
T Consensus 78 ~ai~~~~~ll~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~--vd--~~d~~~l~~~i~~~-tklv~le~P~NP~~~~ 152 (366)
T PRK08247 78 AAIQLVMSLFRSGDELIVSSDLYGGTYRLFEEHWKKWNVRFVY--VN--TASLKAIEQAITPN-TKAIFIETPTNPLMQE 152 (366)
T ss_pred HHHHHHHHHhCCCCEEEEecCCcCcHHHHHHHHhhccCceEEE--EC--CCCHHHHHHhcccC-ceEEEEECCCCCCCcH
Confidence 3344444555432356677887776666677666777644433 23 25889999888653 455555 454 46888
Q ss_pred HHHHHHHHHHHHcCCcEEEecCCCCC----CchhHhhhhhhcccCccc
Q 040341 167 TESIEAVKMSKRAGWGVMASHRSGET----EDTFIADLSVGLATGQIK 210 (251)
Q Consensus 167 te~l~~~~~a~~~g~~~ivs~rsgEt----~d~~iadLAva~~~~~ik 210 (251)
.+.-+++++|+++|..+++-.--+.. ....-+|+.+.+.+.++-
T Consensus 153 ~dl~~I~~la~~~g~~lIvD~t~~~~~~~~p~~~g~di~i~S~sK~~~ 200 (366)
T PRK08247 153 TDIAAIAKIAKKHGLLLIVDNTFYTPVLQRPLEEGADIVIHSATKYLG 200 (366)
T ss_pred HHHHHHHHHHHHcCCEEEEECCCccccccCchhcCCcEEEeecceecc
Confidence 99999999999999887776532110 011236788888777664
No 200
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=49.78 E-value=2.4e+02 Score=26.86 Aligned_cols=161 Identities=14% Similarity=0.139 Sum_probs=88.9
Q ss_pred CCCCCCcccccCCCCCcHHHHHHHHHHHHhc---CCcc-ceeeeeehhhhcccccCCcceeecCCCCCCCCCCcc--Chh
Q 040341 15 ATNVGDEGGFAPNIQESYEGFELLKTAIAKG---GYIG-KIVIGMDVAASEFYDSKDKTYDLNFKEENNDGSQKV--SGD 88 (251)
Q Consensus 15 ~~~vgdeGGfap~~~~~eeal~~i~~Ai~~a---Gy~~-kI~iglD~Aase~~~~~~g~Y~l~~~~~~~d~~~~~--s~~ 88 (251)
..++||- ...|.+..++++.+.+.++++.. +|.+ .=...+--+..+++.. .|.++... .+... ...
T Consensus 56 ~l~~G~P-~~~~~~~~~~~~~~a~~~al~~~~~~~Y~~~~G~~~lr~aia~~~~~---~~~~~~~~----~~v~it~G~~ 127 (430)
T PLN00145 56 PLGHGDP-SAFPCFRTAPEAEDAVAAALRSGKYNSYSTCVGLLPARRAIAEYLSR---DLPYELST----DDIYLTAGCA 127 (430)
T ss_pred eCCCCCC-CCCCCCCCCHHHHHHHHHHHHcCcCCCCCCCccCHHHHHHHHHHHhh---ccCCCCCh----hhEEEeCCHH
Confidence 3455532 22345777889999999988642 4543 1111122244444432 22111100 01111 245
Q ss_pred hHHHHHHHhh-hcCCceeecCCCCcccHHHHHHHHhhhCCceEEEc---ccccccCHHHHHHHHhccCcceeEeeccc-c
Q 040341 89 GLKNVYRSFI-SDHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVG---DDLLVTNPKRVEKAIKEKTCNALLLKVNQ-I 163 (251)
Q Consensus 89 elid~~~~l~-~~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivg---Ddl~vtn~~~i~~~i~~~a~n~ilIK~nq-i 163 (251)
+.+......+ +.=.-|.+++|-.. .|.......|-.+..+- ++-+.-+++.+++.+..+..-.++.-||. .
T Consensus 128 ~al~l~~~~l~~~Gd~Vlv~~P~y~----~y~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~P~NPt 203 (430)
T PLN00145 128 QAIEIIMSVLAQPGANILLPRPGYP----LYEARAVFSGLEVRHFDLLPERGWEVDLEGVEALADENTVAMVIINPNNPC 203 (430)
T ss_pred HHHHHHHHHhcCCCCEEEEcCCCCc----cHHHHHHHcCCEEEEeeCCcccCCcCCHHHHHHHhCcCceEEEEeCCCCCC
Confidence 6666655544 32237889999653 34444444444443331 22245688899888877766677777864 3
Q ss_pred cc---HHHHHHHHHHHHHcCCcEEEec
Q 040341 164 GS---VTESIEAVKMSKRAGWGVMASH 187 (251)
Q Consensus 164 Gt---lte~l~~~~~a~~~g~~~ivs~ 187 (251)
|. ..+..+++++|+++|+.+++-.
T Consensus 204 G~v~~~~~l~~i~~~a~~~~i~ii~De 230 (430)
T PLN00145 204 GSVYSYEHLAKIAETARKLGILVIADE 230 (430)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEec
Confidence 43 3357788899999998876654
No 201
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=49.36 E-value=1.7e+02 Score=26.59 Aligned_cols=93 Identities=15% Similarity=0.127 Sum_probs=69.2
Q ss_pred hhHHHHHHHhhhcCCceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeeccccccHH
Q 040341 88 DGLKNVYRSFISDHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVT 167 (251)
Q Consensus 88 ~elid~~~~l~~~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqiGtlt 167 (251)
+|=++++.+.-++|++-.+=|-...++.+.-++. + .+.=+|=- .+.|.+.++.+-+ ....||||=+|.-|+.
T Consensus 67 eeGL~~L~~vk~~~GlpvvTeV~~~~~~~~v~~~---~--DilQIgAr-n~rn~~LL~a~g~--t~kpV~lKrG~~~t~~ 138 (264)
T PRK05198 67 EEGLKILQEVKETFGVPVLTDVHEPEQAAPVAEV---V--DVLQIPAF-LCRQTDLLVAAAK--TGKVVNIKKGQFLAPW 138 (264)
T ss_pred HHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhh---C--cEEEECch-hcchHHHHHHHhc--cCCeEEecCCCcCCHH
Confidence 4556888887778887777778777776665543 2 33344554 5778877776644 5679999999999999
Q ss_pred HHHHHHHHHHHcC-CcEEEecC
Q 040341 168 ESIEAVKMSKRAG-WGVMASHR 188 (251)
Q Consensus 168 e~l~~~~~a~~~g-~~~ivs~r 188 (251)
|.+-+++...+.| -.+|+..|
T Consensus 139 e~~~aaeyi~~~Gn~~vilcER 160 (264)
T PRK05198 139 DMKNVVDKVREAGNDKIILCER 160 (264)
T ss_pred HHHHHHHHHHHcCCCeEEEEeC
Confidence 9999999998887 56677776
No 202
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=49.33 E-value=1.2e+02 Score=26.05 Aligned_cols=43 Identities=7% Similarity=0.151 Sum_probs=28.5
Q ss_pred cccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEe
Q 040341 112 QDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLL 158 (251)
Q Consensus 112 e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilI 158 (251)
..+++-.+++.+.+ .+++..+. -+++++++++.++.+ ++.++|
T Consensus 59 ~~~~~~i~~i~~~~--~~pv~~~G-gI~~~e~~~~~~~~G-ad~vvi 101 (234)
T cd04732 59 PVNLELIEEIVKAV--GIPVQVGG-GIRSLEDIERLLDLG-VSRVII 101 (234)
T ss_pred CCCHHHHHHHHHhc--CCCEEEeC-CcCCHHHHHHHHHcC-CCEEEE
Confidence 34677777777776 34444444 378888888888776 555554
No 203
>PF00793 DAHP_synth_1: DAHP synthetase I family; InterPro: IPR006218 Members of the 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthetase family catalyse the first step in aromatic amino acid biosynthesis from chorismate. Class I includes bacterial and yeast enzymes; class II includes higher plants and various microorganisms (see IPR002480 from INTERPRO) []. The first step in the common pathway leading to the biosynthesis of aromatic compounds is the stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP). This reaction is catalyzed by DAHP synthase, a metal-activated enzyme, which in microorganisms is the target for negative-feedback regulation by pathway intermediates or by end products. In Escherichia coli there are three DAHP synthetase isoforms, each specifically inhibited by one of the three aromatic amino acids. The crystal structure of the phenylalanine-regulated form of DAHP synthetase shows the fold as is a (beta/alpha)8 barrel with several additional beta strands and alpha helices []. ; GO: 0009058 biosynthetic process; PDB: 3FS2_B 3STF_B 3FYP_D 3QQ1_A 3QPZ_C 3FYO_D 3STC_A 2QKF_D 3STE_C 3QQ0_A ....
Probab=49.16 E-value=1.1e+02 Score=27.69 Aligned_cols=152 Identities=16% Similarity=0.233 Sum_probs=92.8
Q ss_pred CCCCcHHHHHHHHHHHHhcCCc--cceeeeeehhhhcccccC-CcceeecCCCCCCCCCCccChhhHHHHHHHhhhcCCc
Q 040341 27 NIQESYEGFELLKTAIAKGGYI--GKIVIGMDVAASEFYDSK-DKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHPI 103 (251)
Q Consensus 27 ~~~~~eeal~~i~~Ai~~aGy~--~kI~iglD~Aase~~~~~-~g~Y~l~~~~~~~d~~~~~s~~elid~~~~l~~~ypI 103 (251)
.+++.|++++.... +++.|-+ ++|.+-+-+ +|++. +..|. |+ .+-.+.-++.+.+.-++|++
T Consensus 25 sies~e~~~~~A~~-l~~~~~~~~~~i~~~~~~----~~~KpRts~~~--f~--------G~g~d~~L~~l~~v~~~~gl 89 (270)
T PF00793_consen 25 SIESEEQALEYAER-LKELGEKLGDRIPLRMRA----YFEKPRTSPYS--FQ--------GLGLDPGLDILSEVKEGLGL 89 (270)
T ss_dssp B-S-HHHHHHHHHH-HHHHHHHHTTTEEEEEEE----CSC-TTSSTTS--T---------CSTHHHHHHHHHHHHHHHT-
T ss_pred ccCCHHHHHHHHHH-HHHhhhhcCcceEEEEEE----EecCCccCCCC--CC--------CCCCCccchhHHHHHhhhCC
Confidence 57888888887766 5555544 233332221 33332 12222 22 23445535788887778876
Q ss_pred eeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeeccccccHHHHHHHHHHHHHcC--C
Q 040341 104 VSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAG--W 181 (251)
Q Consensus 104 ~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqiGtlte~l~~~~~a~~~g--~ 181 (251)
-.+=+-+++.+.+..++ -+ .+.-+|=- ++.|...++.+-. ....|++|=++..++.+.+.+++.....| -
T Consensus 90 pv~tEv~~~~~~~~~~d---~v--d~lqIgAr-~~~n~~ll~~as~--~~~pV~~K~g~~~ai~~~~~Aae~~~~~G~n~ 161 (270)
T PF00793_consen 90 PVATEVLDPEQAEYVAD---LV--DWLQIGAR-LMENQDLLEAASG--TGKPVGFKNGTFAAIDEWLAAAEKHLFLGINS 161 (270)
T ss_dssp EEEEEESSGGGHHHHHT---TE--SEEEE-GG-GTTCHHHHHHHHC--TSSEEEEEE-TTSHGGGHHHHHHHHHHTTECS
T ss_pred eeeEEecCcccHHHHHh---cC--cEEEECcc-hhcCHHHHHHhcc--CCCeEEeccCCccCHHHHHHHHhhhhhhcCCC
Confidence 65556666677665543 35 56677776 6888888777654 56899999999999999999999999999 4
Q ss_pred cEEEecC---CCCCCchhHhhhh
Q 040341 182 GVMASHR---SGETEDTFIADLS 201 (251)
Q Consensus 182 ~~ivs~r---sgEt~d~~iadLA 201 (251)
+++..|| .|++..-...|++
T Consensus 162 ~~~l~erglr~g~~~n~~~~di~ 184 (270)
T PF00793_consen 162 GNILCERGLRGGYGPNYNVLDIA 184 (270)
T ss_dssp SEEEEEEEEEESSSSSSEEHHTT
T ss_pred CCeeeeeeeeccccccccchhHH
Confidence 6666654 4554444445544
No 204
>PF13684 Dak1_2: Dihydroxyacetone kinase family
Probab=49.09 E-value=85 Score=28.97 Aligned_cols=84 Identities=20% Similarity=0.287 Sum_probs=61.0
Q ss_pred hcCCceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeeccccccHHHHHHHHHHHHH
Q 040341 99 SDHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKR 178 (251)
Q Consensus 99 ~~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqiGtlte~l~~~~~a~~ 178 (251)
.++.|+.+=.. ++++++.+.+|-...|.|..-.--+++++.++++.-.+.-++|=||.--.+..+-++.++++.
T Consensus 95 ~~~~vVAv~~g------~g~~~lf~~~Gv~~vi~ggqt~nPS~~dl~~Ai~~~~a~~VivLPNn~ni~~aa~qa~~~~~~ 168 (313)
T PF13684_consen 95 KDRGVVAVAPG------EGLAELFRSLGVDVVISGGQTMNPSTEDLLNAIEKVGADEVIVLPNNKNIILAAEQAARLSED 168 (313)
T ss_pred CCeEEEEEecC------ccHHHHHHhCCCeEEEeCCCCCCCCHHHHHHHHHhCCCCeEEEEeCCchHHHHHHHHHHHhcC
Confidence 34566666542 678999999985566778774445778999999996677777779988888888888888866
Q ss_pred cCCcEEEecCC
Q 040341 179 AGWGVMASHRS 189 (251)
Q Consensus 179 ~g~~~ivs~rs 189 (251)
.. -.+|-.+|
T Consensus 169 ~~-v~VipTks 178 (313)
T PF13684_consen 169 KN-VVVIPTKS 178 (313)
T ss_pred CC-EEEEecCC
Confidence 64 34555554
No 205
>TIGR02815 agaS_fam putative sugar isomerase, AgaS family. Some members of this protein family are found in regions associated with N-acetyl-galactosamine and galactosamine untilization and are suggested to be isomerases.
Probab=48.82 E-value=24 Score=33.27 Aligned_cols=47 Identities=19% Similarity=0.101 Sum_probs=34.3
Q ss_pred cceeEeeccccccHHHHHHHHHHHHHc--CCcEEEecCCCCCCchhHhh
Q 040341 153 CNALLLKVNQIGSVTESIEAVKMSKRA--GWGVMASHRSGETEDTFIAD 199 (251)
Q Consensus 153 ~n~ilIK~nqiGtlte~l~~~~~a~~~--g~~~ivs~rsgEt~d~~iad 199 (251)
.+.++|=++|-|.=+|++++++.|++. |..++.=....++.-...+|
T Consensus 92 ~~~lvi~iSqSGeT~etv~a~~~ak~~~~g~~~i~it~~~~s~la~~ad 140 (372)
T TIGR02815 92 RPTLLVSFARSGNSPESVAAVELADQLLPECYHLVLTCNEEGALYRNAI 140 (372)
T ss_pred CCeEEEEEeCCcCcHHHHHHHHHHHHhCCCCcEEEEEcCCCCHHHHhhc
Confidence 357888899999999999999999998 66664444444444444555
No 206
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=48.64 E-value=1.9e+02 Score=27.39 Aligned_cols=124 Identities=11% Similarity=0.150 Sum_probs=76.4
Q ss_pred cChhhHHHHHHHhhhcC---Cce--eecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEee
Q 040341 85 VSGDGLKNVYRSFISDH---PIV--SIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 159 (251)
Q Consensus 85 ~s~~elid~~~~l~~~y---pI~--~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK 159 (251)
.++++ .+....|++.- .++ -+-+...+.=.+.-+++.+...+...|.|. |-+++..+.+++.++ +++.+-
T Consensus 104 ~~~~d-~er~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik~ir~~~p~~~viaGN---V~T~e~a~~Li~aGA-D~ikVg 178 (343)
T TIGR01305 104 SSDND-LEKMTSILEAVPQLKFICLDVANGYSEHFVEFVKLVREAFPEHTIMAGN---VVTGEMVEELILSGA-DIVKVG 178 (343)
T ss_pred cCHHH-HHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHhhCCCCeEEEec---ccCHHHHHHHHHcCC-CEEEEc
Confidence 34455 47777777653 222 334455555556667777776544444444 568899998887654 444333
Q ss_pred --cc-----c----c--ccHHHHHHHHHHHHHcCCcEEEecCCCCCCchhHhhhhhhcccCccccCCCCc
Q 040341 160 --VN-----Q----I--GSVTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCR 216 (251)
Q Consensus 160 --~n-----q----i--Gtlte~l~~~~~a~~~g~~~ivs~rsgEt~d~~iadLAva~~~~~ik~G~~~r 216 (251)
|+ | + ..+|...++++.|+..+.++|.-..--...|- =-|+|+|+..+..|++..
T Consensus 179 iGpGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~VIaDGGIr~~gDI---~KALA~GAd~VMlG~llA 245 (343)
T TIGR01305 179 IGPGSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHIISDGGCTCPGDV---AKAFGAGADFVMLGGMFA 245 (343)
T ss_pred ccCCCcccCceeCCCCcCHHHHHHHHHHHhccCCCeEEEcCCcCchhHH---HHHHHcCCCEEEECHhhh
Confidence 11 1 2 48888899999998888888776643333221 135677788888887653
No 207
>PF02677 DUF208: Uncharacterized BCR, COG1636; InterPro: IPR003828 This entry describes proteins of unknown function.
Probab=48.48 E-value=9.4 Score=32.59 Aligned_cols=89 Identities=16% Similarity=0.191 Sum_probs=47.7
Q ss_pred HHHHhhhcCCceeecCCCCcccHHHHHHHHhhh---CCceEEEcccccccCHHHH-HHHHhc---cCcceeEeecccccc
Q 040341 93 VYRSFISDHPIVSIEDPFDQDDWEHHAELTGKI---GRHVQIVGDDLLVTNPKRV-EKAIKE---KTCNALLLKVNQIGS 165 (251)
Q Consensus 93 ~~~~l~~~ypI~~IEDP~~e~D~~~~~~l~~~l---g~~~~ivgDdl~vtn~~~i-~~~i~~---~a~n~ilIK~nqiGt 165 (251)
-+++++++++|-.|+++.+.++|....+-.+.. |.+|.+|=+-- .+.. +.|-+. .-+.++++.|-|--.
T Consensus 46 ~~~~~~~~~~i~~i~~~Y~~~~w~~~v~~~e~epE~g~RC~~Cy~~R----L~~tA~~A~e~gfd~FtTTL~~Sp~k~~~ 121 (176)
T PF02677_consen 46 ELKRFAEKLGIPLIEGDYDPEEWLRAVKGLEDEPEGGKRCRVCYDLR----LEKTAQYAKELGFDYFTTTLLISPYKNHE 121 (176)
T ss_pred HHHHHHHHcCCCEEecCCCHHHHHHHHhhCccCCccCchhHHHHHHH----HHHHHHHHHHcCCCEEEccccCcCccCHH
Confidence 355567788999999996655544433322222 44787775541 1111 122222 256678888877321
Q ss_pred HHHHHHH-HHHHHHcCCcEEEec
Q 040341 166 VTESIEA-VKMSKRAGWGVMASH 187 (251)
Q Consensus 166 lte~l~~-~~~a~~~g~~~ivs~ 187 (251)
+ .-++ -+++++.|+..+-..
T Consensus 122 ~--I~~iG~~~~~~~gv~f~~~D 142 (176)
T PF02677_consen 122 L--INEIGERLAKEYGVEFLYRD 142 (176)
T ss_pred H--HHHHHHHHHHhhCCeEEeec
Confidence 1 1111 135666777666554
No 208
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=48.44 E-value=1.7e+02 Score=26.76 Aligned_cols=83 Identities=20% Similarity=0.248 Sum_probs=55.3
Q ss_pred hcCCceeecCCCCcccHHHHHHHHhhhCCceEEEccccccc---CHHHHHHHHhccCcceeEeeccccccHHHHHHHHHH
Q 040341 99 SDHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVT---NPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKM 175 (251)
Q Consensus 99 ~~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vt---n~~~i~~~i~~~a~n~ilIK~nqiGtlte~l~~~~~ 175 (251)
++.-++...+|+..+=...+.+..++.| ..|++.+.+-. +....-..+....+++|++= +.-.++..+++.
T Consensus 141 ~kvaiv~~~~~~g~~~~~~~~~~~~~~G--~~vv~~~~~~~~~~D~~~~v~~i~~~~pd~V~~~----~~~~~~~~~~~~ 214 (351)
T cd06334 141 KKIALVYHDSPFGKEPIEALKALAEKLG--FEVVLEPVPPPGPNDQKAQWLQIRRSGPDYVILW----GWGVMNPVAIKE 214 (351)
T ss_pred CeEEEEeCCCccchhhHHHHHHHHHHcC--CeeeeeccCCCCcccHHHHHHHHHHcCCCEEEEe----cccchHHHHHHH
Confidence 3344788899999888888888878874 56787774432 33333233444567777763 344577888999
Q ss_pred HHHcCCcE-EEec
Q 040341 176 SKRAGWGV-MASH 187 (251)
Q Consensus 176 a~~~g~~~-ivs~ 187 (251)
+++.|+.. ++++
T Consensus 215 ~~~~G~~~~~~~~ 227 (351)
T cd06334 215 AKRVGLDDKFIGN 227 (351)
T ss_pred HHHcCCCceEEEe
Confidence 99999974 5554
No 209
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=48.41 E-value=1.1e+02 Score=28.05 Aligned_cols=106 Identities=18% Similarity=0.266 Sum_probs=0.0
Q ss_pred HHHHhhhCCceEEE--cccccccCHHHHHHHHhccCcceeEeecccc---ccHHHHHHHHHHHHHcCCcE--EEecCCCC
Q 040341 119 AELTGKIGRHVQIV--GDDLLVTNPKRVEKAIKEKTCNALLLKVNQI---GSVTESIEAVKMSKRAGWGV--MASHRSGE 191 (251)
Q Consensus 119 ~~l~~~lg~~~~iv--gDdl~vtn~~~i~~~i~~~a~n~ilIK~nqi---Gtlte~l~~~~~a~~~g~~~--ivs~rsgE 191 (251)
..+.++. ++||+ +|. .++.+.+.++++.|. ++|.+--++. --+..|.+++++|+..|..| =+|+-.|.
T Consensus 67 ~~~A~~~--~VPV~lHLDH--g~~~e~i~~Ai~~Gf-tSVM~DgS~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~ 141 (284)
T PRK09195 67 SAAAKQY--HHPLALHLDH--HEKFDDIAQKVRSGV-RSVMIDGSHLPFAQNISLVKEVVDFCHRFDVSVEAELGRLGGQ 141 (284)
T ss_pred HHHHHHC--CCCEEEECCC--CCCHHHHHHHHHcCC-CEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEecccCc
Q ss_pred CCc----------------------hhHhhhhhhccc--CccccCCCCchhHHHHhhHHHHH
Q 040341 192 TED----------------------TFIADLSVGLAT--GQIKTGAPCRSERLAKYNQLLRI 229 (251)
Q Consensus 192 t~d----------------------~~iadLAva~~~--~~ik~G~~~r~Er~aKyN~llri 229 (251)
.++ +-+=-|||+.|. |..|...--.-+|+.+.++.+.+
T Consensus 142 e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~v 203 (284)
T PRK09195 142 EDDLQVDEADALYTDPAQAREFVEATGIDSLAVAIGTAHGMYKGEPKLDFDRLENIRQWVNI 203 (284)
T ss_pred ccCcccccccccCCCHHHHHHHHHHHCcCEEeeccCccccccCCCCcCCHHHHHHHHHHhCC
No 210
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=48.31 E-value=84 Score=30.30 Aligned_cols=50 Identities=20% Similarity=0.351 Sum_probs=35.6
Q ss_pred ccccccHHHHHHHHHHHHHcCCc-E---EEecCCCCCCchhHhhhh--hhcccCcc
Q 040341 160 VNQIGSVTESIEAVKMSKRAGWG-V---MASHRSGETEDTFIADLS--VGLATGQI 209 (251)
Q Consensus 160 ~nqiGtlte~l~~~~~a~~~g~~-~---ivs~rsgEt~d~~iadLA--va~~~~~i 209 (251)
+++..+..+++++++.++++|+. + ++-.-.|+|.+++..++. ..++..++
T Consensus 180 l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~e~~~~tl~~~~~l~~~~i 235 (455)
T TIGR00538 180 VNRIQPEEMIFELMNHAREAGFTSINIDLIYGLPKQTKESFAKTLEKVAELNPDRL 235 (455)
T ss_pred hCCCCCHHHHHHHHHHHHhcCCCcEEEeEEeeCCCCCHHHHHHHHHHHHhcCCCEE
Confidence 46778899999999999999985 2 222335899888766554 44555544
No 211
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=47.94 E-value=92 Score=30.07 Aligned_cols=50 Identities=22% Similarity=0.325 Sum_probs=37.4
Q ss_pred eccccccHHHHHHHHHHHHHcCCc-----EEEecCCCCCCchhHhhhhhh--cccCcc
Q 040341 159 KVNQIGSVTESIEAVKMSKRAGWG-----VMASHRSGETEDTFIADLSVG--LATGQI 209 (251)
Q Consensus 159 K~nqiGtlte~l~~~~~a~~~g~~-----~ivs~rsgEt~d~~iadLAva--~~~~~i 209 (251)
++++..+..+++++++.++++|+. +|+|- .|+|.+++..+|..+ ++..+|
T Consensus 180 ~l~R~~~~~~~~~ai~~lr~~G~~~v~~dli~Gl-Pgqt~e~~~~tl~~~~~l~p~~i 236 (453)
T PRK13347 180 AINRIQPEEMVARAVELLRAAGFESINFDLIYGL-PHQTVESFRETLDKVIALSPDRI 236 (453)
T ss_pred HhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEEeC-CCCCHHHHHHHHHHHHhcCCCEE
Confidence 357889999999999999999985 24454 589999887776554 444443
No 212
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=47.68 E-value=1.9e+02 Score=25.29 Aligned_cols=68 Identities=12% Similarity=0.241 Sum_probs=42.0
Q ss_pred ChhhHHHHHHHhhhcCCceeecCCCCc--ccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCccee
Q 040341 86 SGDGLKNVYRSFISDHPIVSIEDPFDQ--DDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNAL 156 (251)
Q Consensus 86 s~~elid~~~~l~~~ypI~~IEDP~~e--~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~i 156 (251)
+|.+++..|.+.+++.=++-+.--+.. .+++-.+++.+..+-++++-| =|++.+++++..+.++...+
T Consensus 31 dp~~~a~~~~~~~~~l~ivDldga~~g~~~n~~~i~~i~~~~~~pv~~gG---GIrs~edv~~l~~~G~~~vi 100 (228)
T PRK04128 31 DPVEIALRFSEYVDKIHVVDLDGAFEGKPKNLDVVKNIIRETGLKVQVGG---GLRTYESIKDAYEIGVENVI 100 (228)
T ss_pred CHHHHHHHHHHhCCEEEEEECcchhcCCcchHHHHHHHHhhCCCCEEEcC---CCCCHHHHHHHHHCCCCEEE
Confidence 678888888774333223333322222 367778888877633343333 37899999998888666544
No 213
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=47.51 E-value=2.1e+02 Score=26.59 Aligned_cols=98 Identities=17% Similarity=0.216 Sum_probs=65.9
Q ss_pred hhHHHHHHHhhhcC-----CceeecCCCCcccHHHHHHHHhhhCCceEEEcccccc----------cCHH---HHHHHHh
Q 040341 88 DGLKNVYRSFISDH-----PIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLV----------TNPK---RVEKAIK 149 (251)
Q Consensus 88 ~elid~~~~l~~~y-----pI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~v----------tn~~---~i~~~i~ 149 (251)
+.+++.++....++ +|...-.+..+++|+.....-++.++---|... +++ ++++ .+-+++.
T Consensus 79 ~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~ad~ielN-iScPnt~g~~~l~~~~e~l~~l~~~vk 157 (310)
T COG0167 79 DAFLEELKLAKYEGKPIGVNIGKNKGGPSEEAWADYARLLEEAGDADAIELN-ISCPNTPGGRALGQDPELLEKLLEAVK 157 (310)
T ss_pred HHHHHHHHhhhhccCCcCcceEEecCCCcHHHHHHHHHHHHhcCCCCEEEEE-ccCCCCCChhhhccCHHHHHHHHHHHH
Confidence 44455444333444 378888898999999999888888630112222 122 1333 3334666
Q ss_pred ccCcceeEeeccccccHHHHHHHHHHHHHcCCcEEEecC
Q 040341 150 EKTCNALLLKVNQIGSVTESIEAVKMSKRAGWGVMASHR 188 (251)
Q Consensus 150 ~~a~n~ilIK~nqiGtlte~l~~~~~a~~~g~~~ivs~r 188 (251)
....-.|.+|+.- .+++..++++.+.++|..-++...
T Consensus 158 ~~~~~Pv~vKl~P--~~~di~~iA~~~~~~g~Dgl~~~N 194 (310)
T COG0167 158 AATKVPVFVKLAP--NITDIDEIAKAAEEAGADGLIAIN 194 (310)
T ss_pred hcccCceEEEeCC--CHHHHHHHHHHHHHcCCcEEEEEe
Confidence 6677889999887 899999999999999987766554
No 214
>PRK00064 recF recombination protein F; Reviewed
Probab=47.44 E-value=52 Score=30.78 Aligned_cols=66 Identities=14% Similarity=0.248 Sum_probs=39.9
Q ss_pred HHHHhhhcCCceeecCCCCcccHHHHHHHHhhhCC-ceEEEcccccccCHHHHHHHHhccCcceeEeecccc
Q 040341 93 VYRSFISDHPIVSIEDPFDQDDWEHHAELTGKIGR-HVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQI 163 (251)
Q Consensus 93 ~~~~l~~~ypI~~IEDP~~e~D~~~~~~l~~~lg~-~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqi 163 (251)
++.+.....||+.+-||+.+=|......|.+.+.. .+|++ ++.++.+.+.... .....+.|+-+++
T Consensus 293 ~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~~~qv~---it~~~~~~~~~~~--~~~~i~~v~~G~i 359 (361)
T PRK00064 293 LLKEETGEAPILLLDDVASELDDGRRAALLERLKGLGAQVF---ITTTDLEDLADLL--ENAKIFHVEQGKI 359 (361)
T ss_pred HHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhccCCEEE---EEcCChhhhhhhh--ccCcEEEEeCCEE
Confidence 33444567899999999999999988888776632 23442 2334444443321 2334555655443
No 215
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=47.35 E-value=17 Score=33.70 Aligned_cols=84 Identities=18% Similarity=0.303 Sum_probs=44.5
Q ss_pred HHHhhhcCC--ceeecCCCCcccHHHHHHHHhhh-CCceEEEcccccccCHHHHHHHHhccCcceeEeeccccccHHHHH
Q 040341 94 YRSFISDHP--IVSIEDPFDQDDWEHHAELTGKI-GRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESI 170 (251)
Q Consensus 94 ~~~l~~~yp--I~~IEDP~~e~D~~~~~~l~~~l-g~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqiGtlte~l 170 (251)
+.++.++++ |.=+-.| ..+. .-|.---.++ +.++.+||-|- .+|-.|-++
T Consensus 79 l~~~A~~~g~~i~DvR~p-~~~~-~~~~g~~~~~~~~rv~~vGTDc-------------------------avGK~tTal 131 (301)
T PF07755_consen 79 LAAAAKKNGVRIIDVRKP-PKDL-PVASGRIREVKAKRVLTVGTDC-------------------------AVGKMTTAL 131 (301)
T ss_dssp HHCCHHCCT--EEETTS---SS------SGGGG-SSEEEEEEESSS-------------------------SSSHHHHHH
T ss_pred HHHHHHHcCCeEeeccCC-Cccc-ccccCccccCCCCEEEEEccCc-------------------------cccHHHHHH
Confidence 444556665 5555666 3232 3333222222 33566777762 358888899
Q ss_pred HHHHHHHHcCCcE-EEe--------cCCCCCCchhHhhhhhhc
Q 040341 171 EAVKMSKRAGWGV-MAS--------HRSGETEDTFIADLSVGL 204 (251)
Q Consensus 171 ~~~~~a~~~g~~~-ivs--------~rsgEt~d~~iadLAva~ 204 (251)
+..+.+++.|++. +++ ...|=.-|..++|++.|.
T Consensus 132 ~L~~~l~~~G~~a~fvaTGQTGimia~~Gv~iDav~~DFvaGa 174 (301)
T PF07755_consen 132 ELRRALRERGINAGFVATGQTGIMIAGYGVPIDAVPSDFVAGA 174 (301)
T ss_dssp HHHHHHHHTT--EEEEE-SHHHHHCHSEC--GGGSBGGGHHHH
T ss_pred HHHHHHHHcCCCceEEecCCceEEEecCCeeccchhhhhHHHH
Confidence 9999999999987 333 333445667777777664
No 216
>PHA02567 rnh RnaseH; Provisional
Probab=47.21 E-value=90 Score=28.98 Aligned_cols=76 Identities=24% Similarity=0.324 Sum_probs=44.3
Q ss_pred ceeeeeehhhhcccccCCcce-eecCCCCCCCCCCccChhhHH-----------HHHHHhhhcCCceeecCCCCcccHHH
Q 040341 50 KIVIGMDVAASEFYDSKDKTY-DLNFKEENNDGSQKVSGDGLK-----------NVYRSFISDHPIVSIEDPFDQDDWEH 117 (251)
Q Consensus 50 kI~iglD~Aase~~~~~~g~Y-~l~~~~~~~d~~~~~s~~eli-----------d~~~~l~~~ypI~~IEDP~~e~D~~~ 117 (251)
.|.++.|...+..|+. ..| + +| +|+..+++++. .+..++++.+||..++.|-.|-| +-
T Consensus 65 ~i~vaFD~~~~~tfR~--elyp~--YK-----AnR~~~Peel~~q~~~l~~~l~~ii~el~~~~gi~~l~~~g~EAD-Dv 134 (304)
T PHA02567 65 EIVLAFDNSKSGYWRR--DIAWY--YK-----KNRKKDREESPWDWEGLFEAINKIVDEIKENMPYKVMKIDKAEAD-DI 134 (304)
T ss_pred eEEEEEeCCCCCCchh--hhhhH--hh-----cCCCCCChHHHHHHHHhhhhHHHHHHHHHHHCCCCEEEeCCccHH-HH
Confidence 5889999754344443 334 2 33 57777788733 34556666789888887766544 33
Q ss_pred HHHHHhhh---CCceEEEccc
Q 040341 118 HAELTGKI---GRHVQIVGDD 135 (251)
Q Consensus 118 ~~~l~~~l---g~~~~ivgDd 135 (251)
-+.|.++. |..+.||.-|
T Consensus 135 IgTLA~k~~~~g~~VvIvS~D 155 (304)
T PHA02567 135 IAVLTKKFSAEGRPVLIVSSD 155 (304)
T ss_pred HHHHHHHHHhCCCcEEEEeCC
Confidence 33444333 4456666433
No 217
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=46.70 E-value=2e+02 Score=25.14 Aligned_cols=151 Identities=14% Similarity=0.158 Sum_probs=84.8
Q ss_pred CcHHHHHHHHHHHHhcCCccceeeeeehh-------hh----cccccC--CcceeecCCCCCC-CCCCccChhhHHHHHH
Q 040341 30 ESYEGFELLKTAIAKGGYIGKIVIGMDVA-------AS----EFYDSK--DKTYDLNFKEENN-DGSQKVSGDGLKNVYR 95 (251)
Q Consensus 30 ~~eeal~~i~~Ai~~aGy~~kI~iglD~A-------as----e~~~~~--~g~Y~l~~~~~~~-d~~~~~s~~elid~~~ 95 (251)
+.+++.++|..|+ +.|++- +|.| +. ++.... +..+.+..|.... .....++++.+...+.
T Consensus 27 ~~~~~~~~l~~A~-~~Gi~~-----iDTA~~Yg~g~sE~~lG~al~~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~l~ 100 (285)
T cd06660 27 DEEEAAAAVRAAL-DAGINF-----IDTADVYGDGESEELLGEALKERGPREEVFIATKVGPRPGDGRDLSPEHIRRAVE 100 (285)
T ss_pred CHHHHHHHHHHHH-HcCCCe-----EECccccCCCCCHHHHHHHHhccCCcCcEEEEeeecCCCCCCCCCCHHHHHHHHH
Confidence 5689999999999 689862 2322 11 111111 2345555442110 0001246666666555
Q ss_pred Hhhhc----C-CceeecCCCCcc--cHHHHHHHHhhhC-CceEEEcccccccCHHHHHHHHhc--cCcceeEeecccccc
Q 040341 96 SFISD----H-PIVSIEDPFDQD--DWEHHAELTGKIG-RHVQIVGDDLLVTNPKRVEKAIKE--KTCNALLLKVNQIGS 165 (251)
Q Consensus 96 ~l~~~----y-pI~~IEDP~~e~--D~~~~~~l~~~lg-~~~~ivgDdl~vtn~~~i~~~i~~--~a~n~ilIK~nqiGt 165 (251)
+-+++ | .+++|-.|-... .-+.|..|.+-.. .++.-+| ++..++..+.+++.. .....+-+..|-.-.
T Consensus 101 ~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~~G~ir~iG--vS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~ 178 (285)
T cd06660 101 ESLKRLGTDYIDLYLLHWPDPDTPDIEETLRALEELVKEGKIRAIG--VSNFSAEQLEEALAAAGVPPAVNQVEYNLLDR 178 (285)
T ss_pred HHHHHhCCCceeEEEecCCCCCCCCHHHHHHHHHHHHHcCCccEEE--eeCCCHHHHHHHHHhhCCCceEEecccCcccC
Confidence 55443 3 388888875543 3566666654331 1455555 344567888887766 455555555443322
Q ss_pred HHHHHHHHHHHHHcCCcEEEecCC
Q 040341 166 VTESIEAVKMSKRAGWGVMASHRS 189 (251)
Q Consensus 166 lte~l~~~~~a~~~g~~~ivs~rs 189 (251)
-.+. +++..|+++|+.++...--
T Consensus 179 ~~~~-~~~~~~~~~gi~v~~~~~l 201 (285)
T cd06660 179 QAEE-ELLPYCREHGIGVIAYSPL 201 (285)
T ss_pred chHH-HHHHHHHHcCcEEEEeccc
Confidence 2221 6889999999998876543
No 218
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=46.57 E-value=2e+02 Score=26.30 Aligned_cols=108 Identities=19% Similarity=0.287 Sum_probs=66.2
Q ss_pred eehhhhcccccCCcceeecCCCCCCCCCCccChhhHHHHHHHhhhcCC-ceeec--------CCCCcccHHHHHH-----
Q 040341 55 MDVAASEFYDSKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHP-IVSIE--------DPFDQDDWEHHAE----- 120 (251)
Q Consensus 55 lD~Aase~~~~~~g~Y~l~~~~~~~d~~~~~s~~elid~~~~l~~~yp-I~~IE--------DP~~e~D~~~~~~----- 120 (251)
+++...+||+. | +..+.++.++.-.+++++=- |+=|= +|..++ +.|..
T Consensus 21 lNvTpDSFsdg--g--------------~~~~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~e--eE~~Rv~pvI 82 (282)
T PRK11613 21 LNVTPDSFSDG--G--------------THNSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVE--EELDRVIPVV 82 (282)
T ss_pred EcCCCCCCCCC--C--------------CCCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHH--HHHHHHHHHH
Confidence 56666666664 3 34466677777777776532 44432 233322 23333
Q ss_pred --HHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeeccccccHHHHHHHHHHHHHcCCcEEEecCCCC
Q 040341 121 --LTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAGWGVMASHRSGE 191 (251)
Q Consensus 121 --l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqiGtlte~l~~~~~a~~~g~~~ivs~rsgE 191 (251)
|.+.+ .++|.=|- .+++-++.|++.|+ +. +|-|.++++- +.++.+.++|..+++-|..|.
T Consensus 83 ~~l~~~~--~~~ISIDT---~~~~va~~AL~~Ga-di----INDI~g~~d~-~~~~~~a~~~~~vVlmh~~g~ 144 (282)
T PRK11613 83 EAIAQRF--EVWISVDT---SKPEVIRESAKAGA-HI----INDIRSLSEP-GALEAAAETGLPVCLMHMQGN 144 (282)
T ss_pred HHHHhcC--CCeEEEEC---CCHHHHHHHHHcCC-CE----EEECCCCCCH-HHHHHHHHcCCCEEEEcCCCC
Confidence 33333 57776664 58999999998863 33 4555555432 556667889999999997654
No 219
>PRK06267 hypothetical protein; Provisional
Probab=46.34 E-value=1.7e+02 Score=27.30 Aligned_cols=111 Identities=14% Similarity=0.067 Sum_probs=60.6
Q ss_pred ccChhhHHHHHHHhhhcCC--ceeecC--CCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhcc------Cc
Q 040341 84 KVSGDGLKNVYRSFISDHP--IVSIED--PFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEK------TC 153 (251)
Q Consensus 84 ~~s~~elid~~~~l~~~yp--I~~IED--P~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~------a~ 153 (251)
.++.+|+++-.+. +.+++ .+++-. |+..++++...+.-++++. ..++.-. -+.+++.+......+ ..
T Consensus 62 ~~s~eeI~eea~~-~~~~Gv~~~~lsgG~~~~~~el~~i~e~I~~~~~-~~~~~s~-G~~d~~~~~~~~l~Gv~g~~ET~ 138 (350)
T PRK06267 62 RRRVESILAEAIL-MKRIGWKLEFISGGYGYTTEEINDIAEMIAYIQG-CKQYLNV-GIIDFLNINLNEIEGVVGAVETV 138 (350)
T ss_pred cCCHHHHHHHHHH-HHHcCCCEEEEecCCCCCHHHHHHHHHHHHHhhC-CceEeec-ccCCHHHHhhccccCceeeeecC
Confidence 5689998887776 45555 334433 3444444444444433321 1122221 234555443221111 12
Q ss_pred ce-eEeeccccccHHHHHHHHHHHHHcCCcE----EEecCCCCCCchhHhh
Q 040341 154 NA-LLLKVNQIGSVTESIEAVKMSKRAGWGV----MASHRSGETEDTFIAD 199 (251)
Q Consensus 154 n~-ilIK~nqiGtlte~l~~~~~a~~~g~~~----ivs~rsgEt~d~~iad 199 (251)
+- +.-+++.-++..+.+++++.|+++|+.+ ++|+ ||+.+++...
T Consensus 139 ~~~~~~~i~~~~s~ed~~~~l~~ak~aGi~v~~g~IiGl--gEt~ed~~~~ 187 (350)
T PRK06267 139 NPKLHREICPGKPLDKIKEMLLKAKDLGLKTGITIILGL--GETEDDIEKL 187 (350)
T ss_pred CHHHHHhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEeC--CCCHHHHHHH
Confidence 11 1223344589999999999999999994 6665 7886655443
No 220
>PRK15108 biotin synthase; Provisional
Probab=46.25 E-value=2.5e+02 Score=26.15 Aligned_cols=112 Identities=11% Similarity=0.083 Sum_probs=64.3
Q ss_pred ccChhhHHHHHHHhhhcCC---ceee---cCCCCcccHHHHHHHHhhhC-CceEEEcccccccCHHHHHHHHhccCccee
Q 040341 84 KVSGDGLKNVYRSFISDHP---IVSI---EDPFDQDDWEHHAELTGKIG-RHVQIVGDDLLVTNPKRVEKAIKEKTCNAL 156 (251)
Q Consensus 84 ~~s~~elid~~~~l~~~yp---I~~I---EDP~~e~D~~~~~~l~~~lg-~~~~ivgDdl~vtn~~~i~~~i~~~a~n~i 156 (251)
.+|++|+++..+.. .+.+ |+.- ++|.. .+++-...+-+.+. ..+.+|.- +-..+.+.+++..+.| .+.+
T Consensus 75 ~ls~eEI~~~a~~~-~~~G~~~i~i~~~g~~p~~-~~~e~i~~~i~~ik~~~i~v~~s-~G~ls~e~l~~LkeAG-ld~~ 150 (345)
T PRK15108 75 LMEVEQVLESARKA-KAAGSTRFCMGAAWKNPHE-RDMPYLEQMVQGVKAMGLETCMT-LGTLSESQAQRLANAG-LDYY 150 (345)
T ss_pred CCCHHHHHHHHHHH-HHcCCCEEEEEecCCCCCc-chHHHHHHHHHHHHhCCCEEEEe-CCcCCHHHHHHHHHcC-CCEE
Confidence 47999998877763 4444 2221 46744 33444444433331 02344411 1223466666544433 3334
Q ss_pred Eeec----------cccccHHHHHHHHHHHHHcCCcE----EEecCCCCCCchhHhhhh
Q 040341 157 LLKV----------NQIGSVTESIEAVKMSKRAGWGV----MASHRSGETEDTFIADLS 201 (251)
Q Consensus 157 lIK~----------nqiGtlte~l~~~~~a~~~g~~~----ivs~rsgEt~d~~iadLA 201 (251)
++.+ ---++..+-++.++.|++.|+.+ ++|+ |||..+.+-++.
T Consensus 151 n~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~Gl--gEt~ed~v~~~~ 207 (345)
T PRK15108 151 NHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGL--GETVKDRAGLLL 207 (345)
T ss_pred eeccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEeC--CCCHHHHHHHHH
Confidence 4322 11368999999999999999876 6665 899776655553
No 221
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=46.12 E-value=57 Score=28.68 Aligned_cols=65 Identities=18% Similarity=0.144 Sum_probs=41.0
Q ss_pred ccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEe-ec-cc-cccHHHHHHHHHHHHHcCCcE
Q 040341 113 DDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLL-KV-NQ-IGSVTESIEAVKMSKRAGWGV 183 (251)
Q Consensus 113 ~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilI-K~-nq-iGtlte~l~~~~~a~~~g~~~ 183 (251)
-||+-..++.+.++-++...|+ +++++++.++.+...++++++ +. +. -=++. ++.+.++++|+.+
T Consensus 184 ~d~~~i~~~~~~~~ipvia~GG---v~s~~d~~~~~~~~G~~gvivg~al~~~~~~~~---~~~~~~~~~~~~~ 251 (253)
T PRK02083 184 YDLELTRAVSDAVNVPVIASGG---AGNLEHFVEAFTEGGADAALAASIFHFGEITIG---ELKAYLAEQGIPV 251 (253)
T ss_pred cCHHHHHHHHhhCCCCEEEECC---CCCHHHHHHHHHhCCccEEeEhHHHHcCCCCHH---HHHHHHHHCCCcc
Confidence 3788889998887545555555 578999999887655666665 21 11 11333 3445566787764
No 222
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=45.78 E-value=1.6e+02 Score=26.27 Aligned_cols=101 Identities=13% Similarity=0.150 Sum_probs=58.7
Q ss_pred CCccChhhHHHHHHHhhhcCC-ceeec----CCCCc--ccHHHHHHHH---hhhCC--ceEEEcccccccCHHHHHHHHh
Q 040341 82 SQKVSGDGLKNVYRSFISDHP-IVSIE----DPFDQ--DDWEHHAELT---GKIGR--HVQIVGDDLLVTNPKRVEKAIK 149 (251)
Q Consensus 82 ~~~~s~~elid~~~~l~~~yp-I~~IE----DP~~e--~D~~~~~~l~---~~lg~--~~~ivgDdl~vtn~~~i~~~i~ 149 (251)
+...+++++++.-.+++++-- ++=|= -|-.. +.-+.|..|. +.+.. .++|+-|- ++++-++.|++
T Consensus 17 ~~~~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~plsiDT---~~~~vi~~al~ 93 (257)
T TIGR01496 17 GRFLSVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDVPISVDT---YRAEVARAALE 93 (257)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEeC---CCHHHHHHHHH
Confidence 344567788888877765532 44441 12111 1112333332 22211 58888884 69999999998
Q ss_pred ccCcceeEeeccccccHHHHHHHHHHHHHcCCcEEEecCCCC
Q 040341 150 EKTCNALLLKVNQIGSVTESIEAVKMSKRAGWGVMASHRSGE 191 (251)
Q Consensus 150 ~~a~n~ilIK~nqiGtlte~l~~~~~a~~~g~~~ivs~rsgE 191 (251)
.|.. . +|-+.+.. -=+++++++++|..+++-|..|.
T Consensus 94 ~G~~-i----INsis~~~-~~~~~~l~~~~~~~vV~m~~~g~ 129 (257)
T TIGR01496 94 AGAD-I----INDVSGGQ-DPAMLEVAAEYGVPLVLMHMRGT 129 (257)
T ss_pred cCCC-E----EEECCCCC-CchhHHHHHHcCCcEEEEeCCCC
Confidence 8533 2 23333322 22567778999999999987653
No 223
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=45.62 E-value=82 Score=28.70 Aligned_cols=84 Identities=18% Similarity=0.234 Sum_probs=56.2
Q ss_pred ceeecCCCCcccHHHHHHHHhhhCCceEEE-cccccccCHHHHHHHHhccCcceeEe-ec-cccccHHHHHHHHHHHHHc
Q 040341 103 IVSIEDPFDQDDWEHHAELTGKIGRHVQIV-GDDLLVTNPKRVEKAIKEKTCNALLL-KV-NQIGSVTESIEAVKMSKRA 179 (251)
Q Consensus 103 I~~IEDP~~e~D~~~~~~l~~~lg~~~~iv-gDdl~vtn~~~i~~~i~~~a~n~ilI-K~-nqiGtlte~l~~~~~a~~~ 179 (251)
-+.+.+|-+...+..|..+.+..|-++..+ -|+-..-+++.+++.+..+ ...+.+ -+ |..|.+...-+++++|+++
T Consensus 90 ~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~-~~~v~~~~~~~~tG~~~~~~~i~~~~~~~ 168 (373)
T cd06453 90 EIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVDDDGQLDLEALEKLLTER-TKLVAVTHVSNVLGTINPVKEIGEIAHEA 168 (373)
T ss_pred EEEECcchhHHHHHHHHHHHhhcCcEEEEeecCCCCCcCHHHHHHHhcCC-ceEEEEeCcccccCCcCCHHHHHHHHHHc
Confidence 456666766666667777766666555444 2332445899999988763 444444 23 3367777777889999999
Q ss_pred CCcEEEec
Q 040341 180 GWGVMASH 187 (251)
Q Consensus 180 g~~~ivs~ 187 (251)
|+.+++-.
T Consensus 169 ~~~li~D~ 176 (373)
T cd06453 169 GVPVLVDG 176 (373)
T ss_pred CCEEEEEh
Confidence 99888765
No 224
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=45.43 E-value=41 Score=31.25 Aligned_cols=45 Identities=9% Similarity=0.346 Sum_probs=37.9
Q ss_pred ccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEee
Q 040341 113 DDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 159 (251)
Q Consensus 113 ~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK 159 (251)
-||+.-+.+.+.+.+ ++|++.- -|.++++.++.++...|++++|-
T Consensus 184 ad~~~I~~vk~~~~~-ipvi~NG-dI~s~~~a~~~l~~tg~DgVMig 228 (323)
T COG0042 184 ADWDYIKELKEAVPS-IPVIANG-DIKSLEDAKEMLEYTGADGVMIG 228 (323)
T ss_pred cCHHHHHHHHHhCCC-CeEEeCC-CcCCHHHHHHHHHhhCCCEEEEc
Confidence 689999999999943 8999888 68999999999888888887764
No 225
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=45.22 E-value=1.4e+02 Score=27.86 Aligned_cols=73 Identities=18% Similarity=0.187 Sum_probs=42.7
Q ss_pred HhhhC-CceEEEcccccccC--HHHHHHHHhccCcceeEe-eccccccHHHHHHHHHHHHHcCCcEEEecCCCCCCc
Q 040341 122 TGKIG-RHVQIVGDDLLVTN--PKRVEKAIKEKTCNALLL-KVNQIGSVTESIEAVKMSKRAGWGVMASHRSGETED 194 (251)
Q Consensus 122 ~~~lg-~~~~ivgDdl~vtn--~~~i~~~i~~~a~n~ilI-K~nqiGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d 194 (251)
.+++| .++.||.|.....+ .+++...++....+...+ .+..--++....++++.+++.+..++|+-.-|-.-|
T Consensus 19 l~~~g~~~~liv~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGSviD 95 (370)
T cd08192 19 CAELGIKRPLIVTDPGLAALGLVARVLALLEDAGLAAALFDEVPPNPTEAAVEAGLAAYRAGGCDGVIAFGGGSALD 95 (370)
T ss_pred HHHcCCCeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCchHHH
Confidence 33444 45666666532222 355555554322232222 122235888888899999999999999887666544
No 226
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=44.89 E-value=2.3e+02 Score=25.32 Aligned_cols=101 Identities=17% Similarity=0.265 Sum_probs=59.8
Q ss_pred CCccChhhHHHHHHHhhhcCC-ceee--c--CC----CC-cccHHHH----HHHHhhhCCceEEEcccccccCHHHHHHH
Q 040341 82 SQKVSGDGLKNVYRSFISDHP-IVSI--E--DP----FD-QDDWEHH----AELTGKIGRHVQIVGDDLLVTNPKRVEKA 147 (251)
Q Consensus 82 ~~~~s~~elid~~~~l~~~yp-I~~I--E--DP----~~-e~D~~~~----~~l~~~lg~~~~ivgDdl~vtn~~~i~~~ 147 (251)
+..++.+++++.-.+++++=- |+=| | -| .. ++.|+-. +.+++.. .++|+-|- ++++-++.|
T Consensus 18 ~~~~~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~--~~plSIDT---~~~~v~e~a 92 (257)
T cd00739 18 GRFLSLDKAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGEL--DVLISVDT---FRAEVARAA 92 (257)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcC--CCcEEEeC---CCHHHHHHH
Confidence 344566787787777766522 4444 1 12 22 2222222 2233333 57888784 589999999
Q ss_pred HhccCcceeEeeccccccHHHHHHHHHHHHHcCCcEEEecCCCCC
Q 040341 148 IKEKTCNALLLKVNQIGSVTESIEAVKMSKRAGWGVMASHRSGET 192 (251)
Q Consensus 148 i~~~a~n~ilIK~nqiGtlte~l~~~~~a~~~g~~~ivs~rsgEt 192 (251)
++.+ +..|| -+.+..+--+++++++++|..+++-|..|..
T Consensus 93 l~~G-~~iIN----disg~~~~~~~~~l~~~~~~~vV~m~~~g~p 132 (257)
T cd00739 93 LEAG-ADIIN----DVSGGSDDPAMLEVAAEYGAPLVLMHMRGTP 132 (257)
T ss_pred HHhC-CCEEE----eCCCCCCChHHHHHHHHcCCCEEEECCCCCC
Confidence 9886 33333 2223221146678899999999999976543
No 227
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=44.74 E-value=1.1e+02 Score=28.85 Aligned_cols=85 Identities=16% Similarity=0.153 Sum_probs=57.8
Q ss_pred ceeecCCCCcccHHHHHHHHhhhCCceEEE-cccccccCHHHHHHHHhccCcceeEee-c-cccccHHHHHHHHHHHHHc
Q 040341 103 IVSIEDPFDQDDWEHHAELTGKIGRHVQIV-GDDLLVTNPKRVEKAIKEKTCNALLLK-V-NQIGSVTESIEAVKMSKRA 179 (251)
Q Consensus 103 I~~IEDP~~e~D~~~~~~l~~~lg~~~~iv-gDdl~vtn~~~i~~~i~~~a~n~ilIK-~-nqiGtlte~l~~~~~a~~~ 179 (251)
-+.+-+|=+...+..|..+.++.|-++..+ .|.-...+++.+++++..+ ...+.|- + |..|++...-+++++|+++
T Consensus 124 ~vl~~~~~~~s~~~~~~~~a~~~g~~v~~v~~~~~~~~~~~~l~~~i~~~-t~lv~i~~~~n~tG~~~~~~~I~~l~~~~ 202 (424)
T PLN02855 124 EVILSVAEHHSNIVPWQLVAQKTGAVLKFVGLTPDEVLDVEQLKELLSEK-TKLVATHHVSNVLGSILPVEDIVHWAHAV 202 (424)
T ss_pred EEEECCCccHHHHHHHHHHHHHcCCEEEEEecCCCCCcCHHHHHHHhccC-ceEEEEeCccccccccCCHHHHHHHHHHc
Confidence 455666655667788988888776555444 2321235788999888653 3444443 2 5578888888899999999
Q ss_pred CCcEEEecC
Q 040341 180 GWGVMASHR 188 (251)
Q Consensus 180 g~~~ivs~r 188 (251)
|+.++|-.-
T Consensus 203 g~~vivD~a 211 (424)
T PLN02855 203 GAKVLVDAC 211 (424)
T ss_pred CCEEEEEhh
Confidence 998877654
No 228
>PRK04311 selenocysteine synthase; Provisional
Probab=44.63 E-value=70 Score=31.23 Aligned_cols=70 Identities=23% Similarity=0.247 Sum_probs=46.2
Q ss_pred HHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeeccc---cc--cHHHHHHHHHHHHHcCCcEEEecCC
Q 040341 119 AELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQ---IG--SVTESIEAVKMSKRAGWGVMASHRS 189 (251)
Q Consensus 119 ~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nq---iG--tlte~l~~~~~a~~~g~~~ivs~rs 189 (251)
..+.++.|-++..|+-+ ..+.++++++++..+..-.+...++. .| .+.+.-+++++|+++|+.+++-..+
T Consensus 185 ~~~~~~~G~~l~~v~~~-~~t~~~dle~aI~~~TklV~~vh~sN~~i~G~~~~~dl~eI~~lak~~gi~vivD~gs 259 (464)
T PRK04311 185 PDVMRQAGARLVEVGTT-NRTHLRDYEQAINENTALLLKVHTSNYRIEGFTKEVSLAELAALGKEHGLPVVYDLGS 259 (464)
T ss_pred HHHHHHCCcEEEEECCC-CCCCHHHHHHhcCccCeEEEEEcCCCccccccCCcCCHHHHHHHHHHcCCeEEEECCC
Confidence 33445666666666533 34678999999976543223344443 23 3557778899999999999997744
No 229
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=44.19 E-value=1.4e+02 Score=28.47 Aligned_cols=75 Identities=19% Similarity=0.178 Sum_probs=46.5
Q ss_pred HHHhhhC-CceEEEcccccccC--HHHHHHHHhccCcceeEe-eccccccHHHHHHHHHHHHHcCCcEEEecCCCCCCc
Q 040341 120 ELTGKIG-RHVQIVGDDLLVTN--PKRVEKAIKEKTCNALLL-KVNQIGSVTESIEAVKMSKRAGWGVMASHRSGETED 194 (251)
Q Consensus 120 ~l~~~lg-~~~~ivgDdl~vtn--~~~i~~~i~~~a~n~ilI-K~nqiGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d 194 (251)
++.+++| .++.||.|.....+ .+++...++....+.... .+-.--++....++++++++++..++|+-.-|-.-|
T Consensus 16 ~~l~~~g~~~vlivt~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGSviD 94 (414)
T cd08190 16 MDLKNLGARRVCLVTDPNLAQLPPVKVVLDSLEAAGINFEVYDDVRVEPTDESFKDAIAFAKKGQFDAFVAVGGGSVID 94 (414)
T ss_pred HHHHHcCCCeEEEEECcchhhcchHHHHHHHHHHcCCcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccHHH
Confidence 3344444 56777777643332 366666665433333332 122234788888999999999999999987555543
No 230
>PLN02979 glycolate oxidase
Probab=44.18 E-value=1.1e+02 Score=29.22 Aligned_cols=92 Identities=18% Similarity=0.245 Sum_probs=57.5
Q ss_pred ccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeecc---ccccHHHHHHHHHHH-HH--cCCcEEEe
Q 040341 113 DDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVN---QIGSVTESIEAVKMS-KR--AGWGVMAS 186 (251)
Q Consensus 113 ~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~n---qiGtlte~l~~~~~a-~~--~g~~~ivs 186 (251)
-+|+..+.|.+.. ++||+--. |.++++++++++.| +++|.+.-+ |..+.--+++++-.+ +. ..+.++++
T Consensus 210 ltW~dl~wlr~~~--~~PvivKg--V~~~~dA~~a~~~G-vd~I~VsnhGGrqld~~p~t~~~L~ei~~~~~~~~~Vi~d 284 (366)
T PLN02979 210 LSWKDVQWLQTIT--KLPILVKG--VLTGEDARIAIQAG-AAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLD 284 (366)
T ss_pred CCHHHHHHHHhcc--CCCEEeec--CCCHHHHHHHHhcC-CCEEEECCCCcCCCCCchhHHHHHHHHHHHhCCCCeEEEe
Confidence 4788888888888 68888887 46899999999886 566666532 222222334444433 22 34788888
Q ss_pred cCCCCCCchhHhhh--hhhcccCccccCCC
Q 040341 187 HRSGETEDTFIADL--SVGLATGQIKTGAP 214 (251)
Q Consensus 187 ~rsgEt~d~~iadL--Ava~~~~~ik~G~~ 214 (251)
..-- +. .|+ |+++|+..+-.|.|
T Consensus 285 GGIr-~G----~Di~KALALGAdaV~iGrp 309 (366)
T PLN02979 285 GGVR-RG----TDVFKALALGASGIFIGRP 309 (366)
T ss_pred CCcC-cH----HHHHHHHHcCCCEEEEcHH
Confidence 7532 22 344 56666666666644
No 231
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=44.18 E-value=1.5e+02 Score=28.43 Aligned_cols=112 Identities=21% Similarity=0.251 Sum_probs=71.5
Q ss_pred HHHHhhhcCCceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEee-c-cccccHHHHH
Q 040341 93 VYRSFISDHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK-V-NQIGSVTESI 170 (251)
Q Consensus 93 ~~~~l~~~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK-~-nqiGtlte~l 170 (251)
.+..++..=.-+.+.+|....-+..|..+.++.|-++..| | +.+++.+++++..+ +..|.+- | |-.|.+...-
T Consensus 95 al~~ll~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv~v~~v-d---~~d~e~l~~ai~~~-tklV~l~sp~NPtG~v~di~ 169 (431)
T PRK08248 95 SILNIASAGDEIVSSSSLYGGTYNLFAHTLPKLGITVKFV-D---PSDPENFEAAITDK-TKALFAETIGNPKGDVLDIE 169 (431)
T ss_pred HHHHHhCCCCEEEEccCchhhHHHHHHHHHHhCCEEEEEE-C---CCCHHHHHHhcCCC-CeEEEEECCCCCCCcccCHH
Confidence 3444444333556677777666677877777776555444 2 24789999988764 4555553 4 5568888888
Q ss_pred HHHHHHHHcCCcEEEecCCCCC--Cc--hhHhhhhhhcccCcc
Q 040341 171 EAVKMSKRAGWGVMASHRSGET--ED--TFIADLSVGLATGQI 209 (251)
Q Consensus 171 ~~~~~a~~~g~~~ivs~rsgEt--~d--~~iadLAva~~~~~i 209 (251)
+++++|+++|+.++|-.-.+.. .. ..=+|+.|.+...++
T Consensus 170 ~I~~la~~~gi~vIvD~t~a~~~~~~pl~~gaDivv~S~tK~l 212 (431)
T PRK08248 170 AVAAIAHEHGIPLIVDNTFASPYLLRPIEHGADIVVHSATKFI 212 (431)
T ss_pred HHHHHHHHcCCEEEEeCCCCccccCChhHcCCCEEEEcCcccc
Confidence 8999999999988876643311 11 123677666655544
No 232
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=44.15 E-value=1.6e+02 Score=26.98 Aligned_cols=108 Identities=15% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHHhhhCCceEEE--cccccccCHHHHHHHHhccCcceeEeecccc---ccHHHHHHHHHHHHHcCCcE--EEecCCCC
Q 040341 119 AELTGKIGRHVQIV--GDDLLVTNPKRVEKAIKEKTCNALLLKVNQI---GSVTESIEAVKMSKRAGWGV--MASHRSGE 191 (251)
Q Consensus 119 ~~l~~~lg~~~~iv--gDdl~vtn~~~i~~~i~~~a~n~ilIK~nqi---Gtlte~l~~~~~a~~~g~~~--ivs~rsgE 191 (251)
..+.++....+||+ .|. .++.+.+.++++.|. ++|.+--++. --+..|.+++++|+..|..| =+|+-.|.
T Consensus 68 ~~~a~~~~~~VPV~lHLDH--g~~~e~i~~ai~~Gf-tSVM~DgS~lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ 144 (285)
T PRK07709 68 KALIEEMNITVPVAIHLDH--GSSFEKCKEAIDAGF-TSVMIDASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQ 144 (285)
T ss_pred HHHHHHcCCCCcEEEECCC--CCCHHHHHHHHHcCC-CEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCc
Q ss_pred CCc--------------------hhHhhhhhhccc--CccccCCCCchhHHHHhhHHHHH
Q 040341 192 TED--------------------TFIADLSVGLAT--GQIKTGAPCRSERLAKYNQLLRI 229 (251)
Q Consensus 192 t~d--------------------~~iadLAva~~~--~~ik~G~~~r~Er~aKyN~llri 229 (251)
.++ +-+-=|||+.|. |.-|...--.-+|+.+.++.+.|
T Consensus 145 ed~~~~~~~~yT~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~~~~~i 204 (285)
T PRK07709 145 EDDVIAEGVIYADPAECKHLVEATGIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFTGV 204 (285)
T ss_pred cCCcccccccCCCHHHHHHHHHHhCCCEEEEeecccccCcCCCCccCHHHHHHHHHHHCC
No 233
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=43.94 E-value=1.2e+02 Score=28.91 Aligned_cols=82 Identities=13% Similarity=0.174 Sum_probs=51.3
Q ss_pred cccHHHHHHHHhhhC-CceEEEcccccccC---HHHHHHHHhccCcceeEe-eccccccHHHHHHHHHHHHHcCCcEEEe
Q 040341 112 QDDWEHHAELTGKIG-RHVQIVGDDLLVTN---PKRVEKAIKEKTCNALLL-KVNQIGSVTESIEAVKMSKRAGWGVMAS 186 (251)
Q Consensus 112 e~D~~~~~~l~~~lg-~~~~ivgDdl~vtn---~~~i~~~i~~~a~n~ilI-K~nqiGtlte~l~~~~~a~~~g~~~ivs 186 (251)
..=+.......+++| .++.|++|. ++.+ .+++...++......... .+..--++....++++++++.+..++|+
T Consensus 34 ~g~~~~l~~~~~~~g~~~~lvv~~~-~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~r~~~~D~Iia 112 (395)
T PRK15454 34 PGAVSSCGQQAQTRGLKHLFVMADS-FLHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQLRESGCDGVIA 112 (395)
T ss_pred cCHHHHHHHHHHhcCCCEEEEEcCc-chhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCcCEEEE
Confidence 334444444444555 567778876 3433 466666665544443332 2333357888889999999999999999
Q ss_pred cCCCCCCc
Q 040341 187 HRSGETED 194 (251)
Q Consensus 187 ~rsgEt~d 194 (251)
-.-|-+-|
T Consensus 113 vGGGS~iD 120 (395)
T PRK15454 113 FGGGSVLD 120 (395)
T ss_pred eCChHHHH
Confidence 97555533
No 234
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=43.87 E-value=1.6e+02 Score=27.62 Aligned_cols=112 Identities=19% Similarity=0.167 Sum_probs=71.6
Q ss_pred HHHhhhcCCceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEe-ec-cccccHHHHHH
Q 040341 94 YRSFISDHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLL-KV-NQIGSVTESIE 171 (251)
Q Consensus 94 ~~~l~~~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilI-K~-nqiGtlte~l~ 171 (251)
...++..=.-+.+.+|....-+..|..+.++.| +.+.--| ..+++.+++++..+ ...|.+ -| |-.|.+.+.-+
T Consensus 81 ~l~~l~pGd~Vi~~~~~y~~t~~~~~~~~~~~g--i~v~~vd--~~d~e~l~~ai~~~-t~lV~lesP~Nptg~~~di~~ 155 (380)
T PRK06176 81 VFSLFQSGDHVLLGDDVYGGTFRLFDKVLVKNG--LSCTIID--TSDLSQIKKAIKPN-TKALYLETPSNPLLKITDLAQ 155 (380)
T ss_pred HHHHcCCCCEEEEcCCChhHHHHHHHHHHHhcC--eEEEEcC--CCCHHHHHHhcCcC-ceEEEEECCCCCCceecCHHH
Confidence 333444323455677876666667777777774 4454334 25789999888653 445554 24 45677778888
Q ss_pred HHHHHHHcCCcEEEecCCCC----CCchhHhhhhhhcccCccc
Q 040341 172 AVKMSKRAGWGVMASHRSGE----TEDTFIADLSVGLATGQIK 210 (251)
Q Consensus 172 ~~~~a~~~g~~~ivs~rsgE----t~d~~iadLAva~~~~~ik 210 (251)
++++|+++|+.++|-.-... -....-+|+.+.+...++-
T Consensus 156 I~~la~~~gi~vivD~t~a~~~~~~p~~~gaDivv~S~tK~l~ 198 (380)
T PRK06176 156 CASVAKDHGLLTIVDNTFATPYYQNPLLLGADIVVHSGTKYLG 198 (380)
T ss_pred HHHHHHHcCCEEEEECCccccccCCccccCCCEEEecCceecc
Confidence 99999999998888654322 1124457888888766664
No 235
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=43.30 E-value=98 Score=28.86 Aligned_cols=85 Identities=13% Similarity=0.203 Sum_probs=56.5
Q ss_pred ceeecCCCCcccHHHHHHHHhhhCCceEEEc-ccccccCHHHHHHHHhccCcceeEee-c-cccccHHHHHHHHHHHHHc
Q 040341 103 IVSIEDPFDQDDWEHHAELTGKIGRHVQIVG-DDLLVTNPKRVEKAIKEKTCNALLLK-V-NQIGSVTESIEAVKMSKRA 179 (251)
Q Consensus 103 I~~IEDP~~e~D~~~~~~l~~~lg~~~~ivg-Ddl~vtn~~~i~~~i~~~a~n~ilIK-~-nqiGtlte~l~~~~~a~~~ 179 (251)
-+.+.++-+..-+..|..+.++.|-++..+- |+-..-+++.+++++..+ ...+.|- | |-.|++...-+++++|+++
T Consensus 115 ~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~-t~lv~l~~~~n~tG~~~~~~~i~~~~~~~ 193 (406)
T PRK09295 115 NIIISEMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPALFDER-TRLLAITHVSNVLGTENPLAEMIALAHQH 193 (406)
T ss_pred EEEECcchhhHHHHHHHHHHHHcCcEEEEEecCCCCCCCHHHHHHhcCCC-cEEEEEecchhcccccCCHHHHHHHHHHc
Confidence 4555565555567778888777765555542 322334788998888654 3344433 3 5578888888899999999
Q ss_pred CCcEEEecC
Q 040341 180 GWGVMASHR 188 (251)
Q Consensus 180 g~~~ivs~r 188 (251)
|+.++|-.-
T Consensus 194 ~~~vivD~a 202 (406)
T PRK09295 194 GAKVLVDGA 202 (406)
T ss_pred CCEEEEEcc
Confidence 988877553
No 236
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=43.18 E-value=40 Score=25.85 Aligned_cols=51 Identities=16% Similarity=0.273 Sum_probs=40.4
Q ss_pred eEeeccccccHHHHHHHHHHHHHcCCcEEEecCCCCCCchhHhhhhhhccc
Q 040341 156 LLLKVNQIGSVTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLAT 206 (251)
Q Consensus 156 ilIK~nqiGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d~~iadLAva~~~ 206 (251)
++|=.++-|.-.+++++++.|+++|.+++.=....++.-.-.+|..+-+..
T Consensus 50 ~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad~~l~~~~ 100 (128)
T cd05014 50 VVIAISNSGETDELLNLLPHLKRRGAPIIAITGNPNSTLAKLSDVVLDLPV 100 (128)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCCchhhhCCEEEECCC
Confidence 455568889999999999999999999877776677777777887665543
No 237
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=43.16 E-value=26 Score=30.54 Aligned_cols=32 Identities=22% Similarity=0.399 Sum_probs=26.4
Q ss_pred cccccHHHHHHHHHHHHHcCCcEEE----ecCCCCC
Q 040341 161 NQIGSVTESIEAVKMSKRAGWGVMA----SHRSGET 192 (251)
Q Consensus 161 nqiGtlte~l~~~~~a~~~g~~~iv----s~rsgEt 192 (251)
.+.||..+..+.++.|+++|+.||+ .|.+.+.
T Consensus 46 ~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~NH~~~~~ 81 (316)
T PF00128_consen 46 PRFGTMEDFKELVDAAHKRGIKVILDVVPNHTSDDH 81 (316)
T ss_dssp TTTBHHHHHHHHHHHHHHTTCEEEEEEETSEEETTS
T ss_pred cccchhhhhhhhhhccccccceEEEeeecccccccc
Confidence 3779999999999999999999954 4655554
No 238
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=42.45 E-value=43 Score=29.93 Aligned_cols=92 Identities=12% Similarity=0.073 Sum_probs=59.7
Q ss_pred HHHhhhcCCceeecCCCCcccHHHHHHHHhhhCCceEEE-cc--cc----cccCHHHHHHHHhc-cCcceeEee-ccccc
Q 040341 94 YRSFISDHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIV-GD--DL----LVTNPKRVEKAIKE-KTCNALLLK-VNQIG 164 (251)
Q Consensus 94 ~~~l~~~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~iv-gD--dl----~vtn~~~i~~~i~~-~a~n~ilIK-~nqiG 164 (251)
+..++..-.-|.+..|.+..-+.+|.. .|.+...+ -+ +- .--+++.+++++.. .....++|- ||-.|
T Consensus 92 l~al~~~gd~Vlv~~~~h~s~~~~~~~----~g~~~~~v~~~~~~~~~~~~~i~~~~l~~~l~~~~~~k~v~l~~p~~~G 167 (294)
T cd00615 92 ILAVCGPGDKILIDRNCHKSVINGLVL----SGAVPVYLKPERNPYYGIAGGIPPETFKKALIEHPDAKAAVITNPTYYG 167 (294)
T ss_pred HHHcCCCCCEEEEeCCchHHHHHHHHH----CCCEEEEecCccCcccCcCCCCCHHHHHHHHHhCCCceEEEEECCCCCC
Confidence 444455545777888877655555542 33333222 21 10 12478999998865 345555554 78789
Q ss_pred cHHHHHHHHHHHHHcCCcEEEecCC
Q 040341 165 SVTESIEAVKMSKRAGWGVMASHRS 189 (251)
Q Consensus 165 tlte~l~~~~~a~~~g~~~ivs~rs 189 (251)
++.+.-+++++|+++|..++|-.--
T Consensus 168 ~~~dl~~I~~~~~~~g~~livDeA~ 192 (294)
T cd00615 168 ICYNLRKIVEEAHHRGLPVLVDEAH 192 (294)
T ss_pred EecCHHHHHHHHHhcCCeEEEECcc
Confidence 9999999999999999999887543
No 239
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=42.29 E-value=45 Score=31.41 Aligned_cols=62 Identities=15% Similarity=0.191 Sum_probs=38.9
Q ss_pred hhcCCceeecCCCCcccHHHHHHHHhhhCCc-eEEEcccccccCHHHHHHHHhccCcceeEeeccc
Q 040341 98 ISDHPIVSIEDPFDQDDWEHHAELTGKIGRH-VQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQ 162 (251)
Q Consensus 98 ~~~ypI~~IEDP~~e~D~~~~~~l~~~lg~~-~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nq 162 (251)
..+.||+.+-||+++=|......|.+.+... +|++ ++.++++.+...--...+..+.|-+++
T Consensus 300 ~~~~pilLLDD~~seLD~~~r~~l~~~l~~~~~qv~---it~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (365)
T TIGR00611 300 GGEYPILLLDDVASELDDQRRRLLAELLQSLGVQVF---VTAISLDHLKEMWDPNRVTIALVSVDR 362 (365)
T ss_pred cCCCCEEEEcCchhccCHHHHHHHHHHHhhcCCEEE---EEecChhhccchhcccceEEEEEecCC
Confidence 3478999999999999999988888877322 3443 122344444433223344456665555
No 240
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=42.25 E-value=3.7e+02 Score=27.18 Aligned_cols=128 Identities=20% Similarity=0.216 Sum_probs=77.8
Q ss_pred CccChhhHHHHHHHhhhcCCceeecCC-----------CCcccHHHHHHHHhhhCC-ceEEE--c----------ccccc
Q 040341 83 QKVSGDGLKNVYRSFISDHPIVSIEDP-----------FDQDDWEHHAELTGKIGR-HVQIV--G----------DDLLV 138 (251)
Q Consensus 83 ~~~s~~elid~~~~l~~~ypI~~IEDP-----------~~e~D~~~~~~l~~~lg~-~~~iv--g----------Ddl~v 138 (251)
..++.++++..... +++.++-+||=- +.+++|+....+.+.+.+ +.+.. | ||+
T Consensus 21 tr~~t~d~l~ia~~-l~~~G~~~iE~~ggatfd~~~rfl~edp~e~l~~l~~~~~~~~l~~l~Rg~N~~gy~~ypd~v-- 97 (592)
T PRK09282 21 TRMRTEDMLPIAEK-LDKVGFWSLEVWGGATFDVCIRYLNEDPWERLRKLKKALPNTPLQMLLRGQNLVGYRHYPDDV-- 97 (592)
T ss_pred ccCCHHHHHHHHHH-HHHcCCCEEEecCCccchhhcccCCccHHHHHHHHHHhCCCCEEEEEeccccccccccccchh--
Confidence 35789999887776 588899999875 578999999988877532 33322 2 221
Q ss_pred cCHHHHHHHHhccCcce-eEeeccccccHHHHHHHHHHHHHcCCcEE--Eec-CCCCCCchhHhhhh---hhcccCcccc
Q 040341 139 TNPKRVEKAIKEKTCNA-LLLKVNQIGSVTESIEAVKMSKRAGWGVM--ASH-RSGETEDTFIADLS---VGLATGQIKT 211 (251)
Q Consensus 139 tn~~~i~~~i~~~a~n~-ilIK~nqiGtlte~l~~~~~a~~~g~~~i--vs~-rsgEt~d~~iadLA---va~~~~~ik~ 211 (251)
....++++.+.+.--. +..-+|.+ .....+++.|+++|..+. ++. .+......++.++| +..++..|-.
T Consensus 98 -v~~~v~~A~~~Gvd~irif~~lnd~---~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~~~Gad~I~i 173 (592)
T PRK09282 98 -VEKFVEKAAENGIDIFRIFDALNDV---RNMEVAIKAAKKAGAHVQGTISYTTSPVHTIEKYVELAKELEEMGCDSICI 173 (592)
T ss_pred -hHHHHHHHHHCCCCEEEEEEecChH---HHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 1234556655433211 22334554 667778889999998775 322 22223455665554 4456666665
Q ss_pred CCCCch
Q 040341 212 GAPCRS 217 (251)
Q Consensus 212 G~~~r~ 217 (251)
-+..+.
T Consensus 174 ~Dt~G~ 179 (592)
T PRK09282 174 KDMAGL 179 (592)
T ss_pred CCcCCC
Confidence 555443
No 241
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=42.22 E-value=50 Score=28.06 Aligned_cols=80 Identities=20% Similarity=0.275 Sum_probs=53.2
Q ss_pred ecCCCCcccHHHHHHHHhhhCCceEEEccccc--ccCHHHHHHHHhccCcceeEeeccccccHHHHHHHHHHHHHcCCcE
Q 040341 106 IEDPFDQDDWEHHAELTGKIGRHVQIVGDDLL--VTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAGWGV 183 (251)
Q Consensus 106 IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~--vtn~~~i~~~i~~~a~n~ilIK~nqiGtlte~l~~~~~a~~~g~~~ 183 (251)
..+||...-+.+..+..+.+|-.+.+++|.-+ -.-.+.+++++..+ .++|++-|..-..+. +.++.|+++|+++
T Consensus 8 ~~~~~~~~~~~g~~~~a~~~g~~~~~~~~~~~d~~~q~~~i~~~i~~~-~d~Iiv~~~~~~~~~---~~l~~~~~~gIpv 83 (257)
T PF13407_consen 8 MDNPFWQQVIKGAKAAAKELGYEVEIVFDAQNDPEEQIEQIEQAISQG-VDGIIVSPVDPDSLA---PFLEKAKAAGIPV 83 (257)
T ss_dssp SSSHHHHHHHHHHHHHHHHHTCEEEEEEESTTTHHHHHHHHHHHHHTT-ESEEEEESSSTTTTH---HHHHHHHHTTSEE
T ss_pred CCCHHHHHHHHHHHHHHHHcCCEEEEeCCCCCCHHHHHHHHHHHHHhc-CCEEEecCCCHHHHH---HHHHHHhhcCceE
Confidence 34555556667777777888777666544321 11234555677666 899999888764444 5567799999999
Q ss_pred EEecCC
Q 040341 184 MASHRS 189 (251)
Q Consensus 184 ivs~rs 189 (251)
+.-.+.
T Consensus 84 v~~d~~ 89 (257)
T PF13407_consen 84 VTVDSD 89 (257)
T ss_dssp EEESST
T ss_pred EEEecc
Confidence 887665
No 242
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=42.21 E-value=35 Score=28.90 Aligned_cols=36 Identities=11% Similarity=0.193 Sum_probs=27.9
Q ss_pred ccCcceeEeeccccccHHHHHHHHHHHHH--cCCcEEE
Q 040341 150 EKTCNALLLKVNQIGSVTESIEAVKMSKR--AGWGVMA 185 (251)
Q Consensus 150 ~~a~n~ilIK~nqiGtlte~l~~~~~a~~--~g~~~iv 185 (251)
...++++++=|+-+||+.|.+++....+- +..++++
T Consensus 94 ~~~sda~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil 131 (178)
T TIGR00730 94 AELADAFIAMPGGFGTLEELFEVLTWAQLGIHQKPIIL 131 (178)
T ss_pred HHhCCEEEEcCCCcchHHHHHHHHHHHHcCCCCCCEEE
Confidence 34689999999999999999999987652 3444444
No 243
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=41.94 E-value=45 Score=30.08 Aligned_cols=72 Identities=19% Similarity=0.205 Sum_probs=48.2
Q ss_pred ccCcceeEeeccc---cccHHHHHHHHHHHHHcCCcEEEecCCCCCCchhHhhhhhhcccCccccCCCCchhHHHHhhHH
Q 040341 150 EKTCNALLLKVNQ---IGSVTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQL 226 (251)
Q Consensus 150 ~~a~n~ilIK~nq---iGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d~~iadLAva~~~~~ik~G~~~r~Er~aKyN~l 226 (251)
.+-.++++||.|. .|++.++++.++.....+..+.|+.++-+- +.-|+..++.+|..|.+. .|.+.+.-++
T Consensus 148 ~~L~d~ilikdnHi~~~g~~~~~v~~~r~~~~~~~~I~vev~t~ee-----a~~A~~~gaD~I~ld~~~-~e~l~~~v~~ 221 (269)
T cd01568 148 LGLSDAVLIKDNHIAAAGGITEAVKRARAAAPFEKKIEVEVETLEE-----AEEALEAGADIIMLDNMS-PEELKEAVKL 221 (269)
T ss_pred CCCcceeeecHhHHHHhCCHHHHHHHHHHhCCCCCeEEEecCCHHH-----HHHHHHcCCCEEEECCCC-HHHHHHHHHH
Confidence 4566789999998 688876665555444335677888865433 555667789999998874 4555554443
Q ss_pred H
Q 040341 227 L 227 (251)
Q Consensus 227 l 227 (251)
+
T Consensus 222 i 222 (269)
T cd01568 222 L 222 (269)
T ss_pred h
Confidence 3
No 244
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=41.85 E-value=1.6e+02 Score=27.63 Aligned_cols=75 Identities=20% Similarity=0.267 Sum_probs=45.2
Q ss_pred HHHhhhCCceEEEcccccc-cC--HHHHHHHHhccCcceeEe-eccccccHHHHHHHHHHHHHcCCcEEEecCCCCCCc
Q 040341 120 ELTGKIGRHVQIVGDDLLV-TN--PKRVEKAIKEKTCNALLL-KVNQIGSVTESIEAVKMSKRAGWGVMASHRSGETED 194 (251)
Q Consensus 120 ~l~~~lg~~~~ivgDdl~v-tn--~~~i~~~i~~~a~n~ilI-K~nqiGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d 194 (251)
++.++.|.++.||.|..+. .+ .+++...++......... .+..--++....++++.+++++..++|+-.-|-.-|
T Consensus 19 ~~~~~~g~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiavGGGS~iD 97 (380)
T cd08185 19 EEALKPGKKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALAREEGCDFVVGLGGGSSMD 97 (380)
T ss_pred HHHHhcCCeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHHcCCCEEEEeCCccHHH
Confidence 3334455677777776331 22 245555554433333332 222234788888888999999999999887555544
No 245
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=41.85 E-value=1.7e+02 Score=23.43 Aligned_cols=76 Identities=14% Similarity=0.272 Sum_probs=43.9
Q ss_pred ChhhHHHHHHHhhhcCCceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeecccccc
Q 040341 86 SGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGS 165 (251)
Q Consensus 86 s~~elid~~~~l~~~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqiGt 165 (251)
..+++.+.|.++-++|.++.||=|=. + ..++ .++ ..+.+-++. . .+.++++=-.+.++
T Consensus 85 ~~~~i~~~~~~l~~~~D~viid~~g~-------------~--~~~~-~~~--~~~~dl~~~-~---~~~vilV~~~~~~~ 142 (166)
T TIGR00347 85 DLEELSKHLRTLEQKYDFVLVEGAGG-------------L--CVPI-TEE--YTTADLIKL-L---QLPVILVVRVKLGT 142 (166)
T ss_pred CHHHHHHHHHHHHhcCCEEEEEcCCc-------------c--ccCC-CCC--CcHHHHHHH-h---CCCEEEEECCCCcH
Confidence 44456667777666777777776521 0 0111 111 122222221 1 34455555567788
Q ss_pred HHHHHHHHHHHHHcCCcE
Q 040341 166 VTESIEAVKMSKRAGWGV 183 (251)
Q Consensus 166 lte~l~~~~~a~~~g~~~ 183 (251)
+.+++.+.+.+++.|..+
T Consensus 143 ~~~~~~~~~~l~~~~~~i 160 (166)
T TIGR00347 143 INHTLLTVEHARQTGLTL 160 (166)
T ss_pred HHHHHHHHHHHHHCCCCe
Confidence 999999999999988875
No 246
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=41.83 E-value=84 Score=29.50 Aligned_cols=114 Identities=20% Similarity=0.229 Sum_probs=74.6
Q ss_pred cccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeecc---ccccHHHHHHHHH---HHHHcCCcEEE
Q 040341 112 QDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVN---QIGSVTESIEAVK---MSKRAGWGVMA 185 (251)
Q Consensus 112 e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~n---qiGtlte~l~~~~---~a~~~g~~~iv 185 (251)
.-+|...+.|+... +.||+--- |.+.++.++|++-+.. .|++.-+ |.-.+-.+|++.. .|-...+.|++
T Consensus 209 Sl~W~Di~wLr~~T--~LPIvvKG--ilt~eDA~~Ave~G~~-GIIVSNHGgRQlD~vpAtI~~L~Evv~aV~~ri~V~l 283 (363)
T KOG0538|consen 209 SLSWKDIKWLRSIT--KLPIVVKG--VLTGEDARKAVEAGVA-GIIVSNHGGRQLDYVPATIEALPEVVKAVEGRIPVFL 283 (363)
T ss_pred CCChhhhHHHHhcC--cCCeEEEe--ecccHHHHHHHHhCCc-eEEEeCCCccccCcccchHHHHHHHHHHhcCceEEEE
Confidence 44788888898888 78888775 5678999999987654 4554421 4444444444433 24556788888
Q ss_pred ecCCCCCCchhHhhhhhhcccCccccCCCC-------chhHHHHhhHHHHHHHHh
Q 040341 186 SHRSGETEDTFIADLSVGLATGQIKTGAPC-------RSERLAKYNQLLRIEEEL 233 (251)
Q Consensus 186 s~rsgEt~d~~iadLAva~~~~~ik~G~~~-------r~Er~aKyN~llrie~~l 233 (251)
-...-.-.| +==|+|+|+.-+..|-|. +..-+.|-=++||=|-|+
T Consensus 284 DGGVR~G~D---VlKALALGAk~VfiGRP~v~gLA~~Ge~GV~~vl~iL~~efe~ 335 (363)
T KOG0538|consen 284 DGGVRRGTD---VLKALALGAKGVFIGRPIVWGLAAKGEAGVKKVLDILRDEFEL 335 (363)
T ss_pred ecCcccchH---HHHHHhcccceEEecCchheeeccccchhHHHHHHHHHHHHHH
Confidence 764222222 234778888888888763 455577777888766664
No 247
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=41.58 E-value=45 Score=30.61 Aligned_cols=96 Identities=15% Similarity=0.133 Sum_probs=61.9
Q ss_pred CCceEEEcccccccCHHHHH-HHHh--------ccCcceeEeeccc---cccHHHHHHHHHHHHHcCCcEEEecCCCCCC
Q 040341 126 GRHVQIVGDDLLVTNPKRVE-KAIK--------EKTCNALLLKVNQ---IGSVTESIEAVKMSKRAGWGVMASHRSGETE 193 (251)
Q Consensus 126 g~~~~ivgDdl~vtn~~~i~-~~i~--------~~a~n~ilIK~nq---iGtlte~l~~~~~a~~~g~~~ivs~rsgEt~ 193 (251)
+.++.|++=-=+.-..+.++ +|+. .+-.+.++||-|. .|++.++++.++........+-|+.++-|-
T Consensus 130 ~~~~~i~~TRKt~Pg~R~l~k~AV~~GGg~~HR~gL~d~ilikdNHi~~~g~i~~av~~~r~~~~~~~~I~VEv~tlee- 208 (288)
T PRK07428 130 DLPTQLVDTRKTTPGLRLLEKYATQVGGAINHRMGLDDAVMIKDNHIQAAGGIGEAITRIRQRIPYPLTIEVETETLEQ- 208 (288)
T ss_pred CCCeEEEecCCCCCcchHHHHHHHHhcCcccccCCchheeeecHHHHHHhCCHHHHHHHHHHhCCCCCEEEEECCCHHH-
Confidence 34566664332222344444 3443 3455789999988 488888777766544445667777765444
Q ss_pred chhHhhhhhhcccCccccCCCCchhHHHHhhHHH
Q 040341 194 DTFIADLSVGLATGQIKTGAPCRSERLAKYNQLL 227 (251)
Q Consensus 194 d~~iadLAva~~~~~ik~G~~~r~Er~aKyN~ll 227 (251)
+.-|+..++.+|..+-. ..|.+.+.-+++
T Consensus 209 ----a~eA~~~GaD~I~LDn~-~~e~l~~av~~~ 237 (288)
T PRK07428 209 ----VQEALEYGADIIMLDNM-PVDLMQQAVQLI 237 (288)
T ss_pred ----HHHHHHcCCCEEEECCC-CHHHHHHHHHHH
Confidence 66788889999999866 457776666654
No 248
>PRK01060 endonuclease IV; Provisional
Probab=41.32 E-value=1.8e+02 Score=25.48 Aligned_cols=25 Identities=8% Similarity=0.266 Sum_probs=17.4
Q ss_pred cChhhHHHHHHHhhhcCCc----eeecCCC
Q 040341 85 VSGDGLKNVYRSFISDHPI----VSIEDPF 110 (251)
Q Consensus 85 ~s~~elid~~~~l~~~ypI----~~IEDP~ 110 (251)
+++++ ++.+++++++++| +++..|+
T Consensus 44 ~~~~~-~~~lk~~~~~~gl~~~~~~~h~~~ 72 (281)
T PRK01060 44 LEELN-IEAFKAACEKYGISPEDILVHAPY 72 (281)
T ss_pred CCHHH-HHHHHHHHHHcCCCCCceEEecce
Confidence 45666 5778888999986 4555664
No 249
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=41.25 E-value=2e+02 Score=23.61 Aligned_cols=54 Identities=20% Similarity=0.286 Sum_probs=42.9
Q ss_pred cceeEeeccccccHHHHHHHHHHHHHcCCcEEEecCCCCCCchhHhhhhhhccc
Q 040341 153 CNALLLKVNQIGSVTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLAT 206 (251)
Q Consensus 153 ~n~ilIK~nqiGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d~~iadLAva~~~ 206 (251)
.+-++|=.++-|.-.+++++++.|++.|.+++.=..+.++.-...+|..+-+..
T Consensus 75 ~~D~vI~iS~sG~t~~~i~~~~~ak~~g~~iI~IT~~~~s~la~~ad~~l~~~~ 128 (179)
T cd05005 75 PGDLLIAISGSGETSSVVNAAEKAKKAGAKVVLITSNPDSPLAKLADVVVVIPA 128 (179)
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEeCC
Confidence 345667788999999999999999999999977776677777777887664433
No 250
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=40.97 E-value=1.5e+02 Score=22.20 Aligned_cols=67 Identities=15% Similarity=0.245 Sum_probs=49.8
Q ss_pred HHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeeccccccHHHHHHHHHHHHHc--CCcEEEecC
Q 040341 119 AELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRA--GWGVMASHR 188 (251)
Q Consensus 119 ~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqiGtlte~l~~~~~a~~~--g~~~ivs~r 188 (251)
+.+.++-|..+.+++-. .+++.+.+.+.....+.+.+......++..+.++++.+++. +..+++|..
T Consensus 21 a~~l~~~G~~v~~~d~~---~~~~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~ 89 (121)
T PF02310_consen 21 AAYLRKAGHEVDILDAN---VPPEELVEALRAERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGP 89 (121)
T ss_dssp HHHHHHTTBEEEEEESS---B-HHHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEES
T ss_pred HHHHHHCCCeEEEECCC---CCHHHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECC
Confidence 33344457777777443 24577777777778899999887888999999999998887 677888875
No 251
>cd03527 RuBisCO_small Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits.
Probab=40.69 E-value=1.7e+02 Score=22.60 Aligned_cols=68 Identities=13% Similarity=0.162 Sum_probs=46.6
Q ss_pred cccCCCCCcHHHHHHHHHHHHhcCCccceeeeeehhhhcccccCCcceeecCCCCCCCCCCccChhhHHHHHHHhhhcCC
Q 040341 23 GFAPNIQESYEGFELLKTAIAKGGYIGKIVIGMDVAASEFYDSKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHP 102 (251)
Q Consensus 23 Gfap~~~~~eeal~~i~~Ai~~aGy~~kI~iglD~Aase~~~~~~g~Y~l~~~~~~~d~~~~~s~~elid~~~~l~~~yp 102 (251)
.|-|++. .++..+.|.-.| ..|| .|++..+-...|+ +.|=..++.|-. ...++++.+.-+.+...+||
T Consensus 7 sylp~lt-~~~i~~QI~yll-~qG~----~~~lE~ad~~~~~---~~yW~mwklP~f---~~~d~~~Vl~ei~~C~~~~p 74 (99)
T cd03527 7 SYLPPLT-DEQIAKQIDYII-SNGW----APCLEFTEPEHYD---NRYWTMWKLPMF---GCTDPAQVLREIEACRKAYP 74 (99)
T ss_pred ccCCCCC-HHHHHHHHHHHH-hCCC----EEEEEcccCCCCC---CCEEeeccCCCC---CCCCHHHHHHHHHHHHHHCC
Confidence 3678885 589999999988 7899 5677776666666 466333443322 23467777777777667888
No 252
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=40.66 E-value=2.7e+02 Score=24.96 Aligned_cols=52 Identities=25% Similarity=0.295 Sum_probs=36.5
Q ss_pred cccccccCHHHHHH---HHhccCcceeEeeccccccHHHHHHHHHHHHHcCCcEEEec
Q 040341 133 GDDLLVTNPKRVEK---AIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAGWGVMASH 187 (251)
Q Consensus 133 gDdl~vtn~~~i~~---~i~~~a~n~ilIK~nqiGtlte~l~~~~~a~~~g~~~ivs~ 187 (251)
|+. +..+++.+.+ ++.....-.|.+|++ .++.++.++++.+.++|...++-|
T Consensus 135 g~~-l~~~~~~~~eiv~~vr~~~~~pv~vKi~--~~~~~~~~~a~~l~~~G~d~i~v~ 189 (300)
T TIGR01037 135 GIA-IGQDPELSADVVKAVKDKTDVPVFAKLS--PNVTDITEIAKAAEEAGADGLTLI 189 (300)
T ss_pred ccc-cccCHHHHHHHHHHHHHhcCCCEEEECC--CChhhHHHHHHHHHHcCCCEEEEE
Confidence 344 4566665543 444333457899987 477899999999999999987644
No 253
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=40.64 E-value=2.3e+02 Score=25.47 Aligned_cols=87 Identities=14% Similarity=0.183 Sum_probs=58.9
Q ss_pred CCceeecCCCCcccHHHHHHHHhhhC-CceEE--EcccccccCHHHHHHHHhccCcceeEeeccc---cccHHHHHHHHH
Q 040341 101 HPIVSIEDPFDQDDWEHHAELTGKIG-RHVQI--VGDDLLVTNPKRVEKAIKEKTCNALLLKVNQ---IGSVTESIEAVK 174 (251)
Q Consensus 101 ypI~~IEDP~~e~D~~~~~~l~~~lg-~~~~i--vgDdl~vtn~~~i~~~i~~~a~n~ilIK~nq---iGtlte~l~~~~ 174 (251)
-.+-++.+|+++.=+|.=-.|.++.+ ..+-+ +|.. .....+-+++++.+|+-++++|-=.+ .-++.-+.-.+.
T Consensus 28 ~~~~~~iN~~D~~AlE~Alrlke~~~g~~Vtvvs~Gp~-~a~~~~~lr~aLAmGaD~avli~d~~~~g~D~~~tA~~La~ 106 (256)
T PRK03359 28 SKADAKISQYDLNAIEAACQLKQQAAEAQVTALSVGGK-ALTNAKGRKDVLSRGPDELIVVIDDQFEQALPQQTASALAA 106 (256)
T ss_pred CCCccccChhhHHHHHHHHHHhhhcCCCEEEEEEECCc-chhhHHHHHHHHHcCCCEEEEEecCcccCcCHHHHHHHHHH
Confidence 35566778888877777777777653 34433 3554 23344568999999999999996333 344555555566
Q ss_pred HHHHcCCcEEEecC
Q 040341 175 MSKRAGWGVMASHR 188 (251)
Q Consensus 175 ~a~~~g~~~ivs~r 188 (251)
.+++.++.+++..+
T Consensus 107 ai~~~~~DLVl~G~ 120 (256)
T PRK03359 107 AAQKAGFDLILCGD 120 (256)
T ss_pred HHHHhCCCEEEEcC
Confidence 67778899887775
No 254
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=40.62 E-value=1.3e+02 Score=27.32 Aligned_cols=73 Identities=18% Similarity=0.165 Sum_probs=49.9
Q ss_pred HHHHHHHHhhhCCceEEEc-ccccccCHHHHHHHHhccCcceeEeec-cccccHHHHHHHHHHHHHcCCcEEEec
Q 040341 115 WEHHAELTGKIGRHVQIVG-DDLLVTNPKRVEKAIKEKTCNALLLKV-NQIGSVTESIEAVKMSKRAGWGVMASH 187 (251)
Q Consensus 115 ~~~~~~l~~~lg~~~~ivg-Ddl~vtn~~~i~~~i~~~a~n~ilIK~-nqiGtlte~l~~~~~a~~~g~~~ivs~ 187 (251)
+..|.+..+..|-++..+- |+-..-+++.+++++..+..-.+.+-+ |-.|++...-++.++|+++|..++|-.
T Consensus 114 h~s~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~vi~~~~~~~tG~~~~l~~I~~l~~~~g~~livD~ 188 (371)
T PRK13520 114 HFSFDKAADMLGVELRRAPLDDDYRVDVKAVEDLIDDNTIGIVGIAGTTELGQVDPIPELSKIALENGIFLHVDA 188 (371)
T ss_pred hHHHHHHHHHcCceEEEecCCCCCcCCHHHHHHHHhhCCEEEEEEcCCcCCcccCCHHHHHHHHHHcCCCEEEEe
Confidence 4567777777765555442 221345899999998765322232333 467999888899999999999888866
No 255
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=40.55 E-value=2.7e+02 Score=24.98 Aligned_cols=140 Identities=17% Similarity=0.176 Sum_probs=77.4
Q ss_pred CCccChhhHHHHHHHhhhcCCceeecCC-------CC-cccHH-HHHHHHhhhCCceEEEcccccccCHHHHHHHHhccC
Q 040341 82 SQKVSGDGLKNVYRSFISDHPIVSIEDP-------FD-QDDWE-HHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKT 152 (251)
Q Consensus 82 ~~~~s~~elid~~~~l~~~ypI~~IEDP-------~~-e~D~~-~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a 152 (251)
+..+|.++-+.++.. +.+.+|-.||=. +. -.|.+ -.+.+.+..+.++.. ++-|.++++++++.+.
T Consensus 14 ~~~~s~e~K~~i~~~-L~~~Gv~~IEvGs~~~~~~~p~~~d~~~~~~~l~~~~~~~~~~-----~~~~~~dv~~A~~~g~ 87 (274)
T cd07938 14 KTFIPTEDKIELIDA-LSAAGLRRIEVTSFVSPKWVPQMADAEEVLAGLPRRPGVRYSA-----LVPNLRGAERALAAGV 87 (274)
T ss_pred CCCcCHHHHHHHHHH-HHHcCCCEEEeCCCCCcccccccCCHHHHHhhcccCCCCEEEE-----ECCCHHHHHHHHHcCc
Confidence 457899998888877 588888888876 21 01222 222222221112222 2358899999998763
Q ss_pred cceeE-eecc-------cc----ccHHHHHHHHHHHHHcCCcEEEe------c-CCCCCCchhHh---hhhhhcccCccc
Q 040341 153 CNALL-LKVN-------QI----GSVTESIEAVKMSKRAGWGVMAS------H-RSGETEDTFIA---DLSVGLATGQIK 210 (251)
Q Consensus 153 ~n~il-IK~n-------qi----Gtlte~l~~~~~a~~~g~~~ivs------~-rsgEt~d~~ia---dLAva~~~~~ik 210 (251)
-..-+ +..| .- --+..+.++++.|+++|+.+.++ + -.+.+...++. ..++..++..|.
T Consensus 88 ~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~ 167 (274)
T cd07938 88 DEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEVPPERVAEVAERLLDLGCDEIS 167 (274)
T ss_pred CEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 32211 2222 11 22456677888999999998532 1 12344445444 445666776664
Q ss_pred cCC---CCchhHHHHhhHHH
Q 040341 211 TGA---PCRSERLAKYNQLL 227 (251)
Q Consensus 211 ~G~---~~r~Er~aKyN~ll 227 (251)
.-+ ....+++..+=+-|
T Consensus 168 l~DT~G~~~P~~v~~lv~~l 187 (274)
T cd07938 168 LGDTIGVATPAQVRRLLEAV 187 (274)
T ss_pred ECCCCCccCHHHHHHHHHHH
Confidence 443 34445554443333
No 256
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=40.24 E-value=3.2e+02 Score=26.84 Aligned_cols=101 Identities=15% Similarity=0.242 Sum_probs=70.8
Q ss_pred CCCCccChhhHHHHHHHhhhcCCceeecCCCCcccHHHHHHHHhhhCCceEEEcccccc---cCHHHHHHHHhccCccee
Q 040341 80 DGSQKVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLV---TNPKRVEKAIKEKTCNAL 156 (251)
Q Consensus 80 d~~~~~s~~elid~~~~l~~~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~v---tn~~~i~~~i~~~a~n~i 156 (251)
|++-.+|.= |+....+|.+..++.|+- .|+-...|+-=.++++-.. +++++ ||.++|.+.++...-+.+
T Consensus 101 dPGIGKSTL-LLQva~~lA~~~~vLYVs---GEES~~QiklRA~RL~~~~----~~l~l~aEt~~e~I~~~l~~~~p~lv 172 (456)
T COG1066 101 DPGIGKSTL-LLQVAARLAKRGKVLYVS---GEESLQQIKLRADRLGLPT----NNLYLLAETNLEDIIAELEQEKPDLV 172 (456)
T ss_pred CCCCCHHHH-HHHHHHHHHhcCcEEEEe---CCcCHHHHHHHHHHhCCCc----cceEEehhcCHHHHHHHHHhcCCCEE
Confidence 455556543 456666766666888873 3566777877677885222 55554 799999999999888888
Q ss_pred Eeecccc----------ccHHHHH----HHHHHHHHcCCcE-EEecC
Q 040341 157 LLKVNQI----------GSVTESI----EAVKMSKRAGWGV-MASHR 188 (251)
Q Consensus 157 lIK~nqi----------Gtlte~l----~~~~~a~~~g~~~-ivs~r 188 (251)
+|--=|. ||+|..- +.+++|+..|+.+ +|+|-
T Consensus 173 VIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVGHV 219 (456)
T COG1066 173 VIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVGHV 219 (456)
T ss_pred EEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEEEE
Confidence 8765442 8888755 4567899999988 67774
No 257
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=40.15 E-value=1.5e+02 Score=27.76 Aligned_cols=72 Identities=19% Similarity=0.236 Sum_probs=39.7
Q ss_pred hhhC-CceEEEcccccccC--HHHHHHHHhccCcceeEe-eccccccHHHHHHHHHHHHHcCCcEEEecCCCCCCc
Q 040341 123 GKIG-RHVQIVGDDLLVTN--PKRVEKAIKEKTCNALLL-KVNQIGSVTESIEAVKMSKRAGWGVMASHRSGETED 194 (251)
Q Consensus 123 ~~lg-~~~~ivgDdl~vtn--~~~i~~~i~~~a~n~ilI-K~nqiGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d 194 (251)
+++| .++.||.|.....+ .+++...++....+.... ..-.--++....++++.+++++..++|+-.-|-.-|
T Consensus 26 ~~~g~~~~lvvtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD 101 (382)
T PRK10624 26 KRRGFKKALIVTDKTLVKCGVVAKVTDVLDAAGLAYEIYDGVKPNPTIEVVKEGVEVFKASGADYLIAIGGGSPQD 101 (382)
T ss_pred HhcCCCEEEEEeCcchhhCcchHHHHHHHHHCCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCChHHHH
Confidence 3334 46666666532222 344555554332222222 122223677777788888888999988887555533
No 258
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=39.81 E-value=1.6e+02 Score=27.84 Aligned_cols=75 Identities=19% Similarity=0.173 Sum_probs=50.6
Q ss_pred HHHHHhccCcceeEeeccc-----cccHHHHHHHHHHHHHcCCcEEE-ecCCCCC--Cc----------hhHhhhhhhcc
Q 040341 144 VEKAIKEKTCNALLLKVNQ-----IGSVTESIEAVKMSKRAGWGVMA-SHRSGET--ED----------TFIADLSVGLA 205 (251)
Q Consensus 144 i~~~i~~~a~n~ilIK~nq-----iGtlte~l~~~~~a~~~g~~~iv-s~rsgEt--~d----------~~iadLAva~~ 205 (251)
++.|+++++ .+|-+-++- --.+.+.-++++.|++.|+++++ +.-.|+. .+ ...+.+|+-+|
T Consensus 152 VedAlrLGA-dAV~~tvy~Gs~~E~~ml~~l~~i~~ea~~~GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRiaaELG 230 (348)
T PRK09250 152 VEDALRLGA-VAVGATIYFGSEESRRQIEEISEAFEEAHELGLATVLWSYLRNSAFKKDGDYHTAADLTGQANHLAATIG 230 (348)
T ss_pred HHHHHHCCC-CEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecccCcccCCcccccccHHHHHHHHHHHHHHc
Confidence 556777765 355544432 23577777888999999999976 3433441 11 34578999999
Q ss_pred cCccccCCCCchhH
Q 040341 206 TGQIKTGAPCRSER 219 (251)
Q Consensus 206 ~~~ik~G~~~r~Er 219 (251)
+..||+--|...+.
T Consensus 231 ADIVKv~yp~~~~~ 244 (348)
T PRK09250 231 ADIIKQKLPTNNGG 244 (348)
T ss_pred CCEEEecCCCChhh
Confidence 99999887754444
No 259
>PF07969 Amidohydro_3: Amidohydrolase family; InterPro: IPR013108 Amidohydrolases are a diverse superfamily of enzymes which catalyse the hydrolysis of amide or amine bonds in a large number of different substrates including urea, cytosine, AMP, formylmethanofuran, etc [, ]. Also included in this superfamily are the phopshotriesterase enzymes, which hydrolyse P-O bonds. Members participate in a large number of processes including nucleotide metabolism, detoxification and neuronal development. They use a variety of divalent metal cofactors for catalysis: for example adenosine deaminase binds a single zinc ion, phopsphotriesterase binds two, while urease binds nickel. It has been postulated that since some of these proteins, such as those some of those involved in neuronal devlopment, appear to have lost their metal-binding centres, their function may simply be to bind, but not hydrolyse, their target molecules. This entry represents a subset of amidohydrolase domains that participate in different functions including cytosine degradation, atrazine degradation and other metabolic processes. The structure of the domain from Escherichia coli has been studied, and like other amidohydrolases it forms a classical alpha-beta TIM-barrel fold []. The active site is located in the mouth of the enzyme barrel and contains a bound iron ion that coordinates a hydroxyl nucleophile. Substrate binding involves a significant conformational change that sequesters the reaction complex from solvent.; PDB: 4F0R_A 4F0S_A 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A ....
Probab=39.80 E-value=80 Score=29.17 Aligned_cols=102 Identities=18% Similarity=0.142 Sum_probs=62.8
Q ss_pred cChhhHHHHHHHhh---hcCCceeecCCC-----CcccHHHHHHHHhhhC-----------CceEEEcccccccCHHHHH
Q 040341 85 VSGDGLKNVYRSFI---SDHPIVSIEDPF-----DQDDWEHHAELTGKIG-----------RHVQIVGDDLLVTNPKRVE 145 (251)
Q Consensus 85 ~s~~elid~~~~l~---~~ypI~~IEDP~-----~e~D~~~~~~l~~~lg-----------~~~~ivgDdl~vtn~~~i~ 145 (251)
.+.+++.+.+++.. ..++|.++-|+- .+++++.+.++.+.-+ ..+.+..|.. ......+.
T Consensus 123 ~~~~~~~~~l~~~~~~~~a~GiTt~~d~~~~~~~~~~~~~~~~~l~~~~~l~~rv~~~~~~~~vk~~~dg~-~~~~~a~~ 201 (404)
T PF07969_consen 123 AELEEMREALREAAMAAGAYGITTVLDYGGGFASDPEDLEALRELAAEGGLPLRVHLYPRIGGVKIFADGS-PGGRTALL 201 (404)
T ss_dssp HHHHHHHHHHHHHHHHHCHTCEEEETTCECCCGEHHHHHHHHHHHHHCTC--SEEEEEEEEEEEEEESSSS-TTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCeEEecCCccccCCCHHHHHHHHHHhhhcCCCeeeeeecccCceeeccccc-cccchhhh
Confidence 44566666666533 357799999987 5677888888877754 2344567773 32222222
Q ss_pred HH--HhccCcceeEeeccccccHHHHHHHHHHHHHcCCcEEEec
Q 040341 146 KA--IKEKTCNALLLKVNQIGSVTESIEAVKMSKRAGWGVMASH 187 (251)
Q Consensus 146 ~~--i~~~a~n~ilIK~nqiGtlte~l~~~~~a~~~g~~~ivs~ 187 (251)
.. +.......+.+.....-+-.+..++++.|.+.|+.+.|-+
T Consensus 202 ~~~~~~~~~g~~~~~~g~~~~~~~~l~~~v~~a~~~g~~v~vHa 245 (404)
T PF07969_consen 202 EEPYYADEPGAPVHISGLPSFDPEELEELVRAAREAGLQVAVHA 245 (404)
T ss_dssp HHHHHHHHHTSEEEETC--SSSHHHHHHHHHHHHHCT-EEEEEE
T ss_pred ccccccCcccccccccccccccchhHHHHHHHHHhcCCeeEEEE
Confidence 22 2222333344444455566678899999999999999888
No 260
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=39.51 E-value=41 Score=25.92 Aligned_cols=33 Identities=27% Similarity=0.433 Sum_probs=27.2
Q ss_pred cceeEeeccccccHHHHHHHHHHHHHcCCcEEE
Q 040341 153 CNALLLKVNQIGSVTESIEAVKMSKRAGWGVMA 185 (251)
Q Consensus 153 ~n~ilIK~nqiGtlte~l~~~~~a~~~g~~~iv 185 (251)
.+.++|=.++-|.-.|++++++.|++.|.+++.
T Consensus 43 ~~dl~I~iS~SG~t~e~i~~~~~a~~~g~~iI~ 75 (119)
T cd05017 43 RKTLVIAVSYSGNTEETLSAVEQAKERGAKIVA 75 (119)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEE
Confidence 344566689999999999999999999987754
No 261
>PRK08227 autoinducer 2 aldolase; Validated
Probab=39.28 E-value=1.1e+02 Score=27.64 Aligned_cols=70 Identities=23% Similarity=0.252 Sum_probs=45.7
Q ss_pred HHHHHhccCcceeEeeccc-----cccHHHHHHHHHHHHHcCCcEEEecCCCCC---Cc---hhHhhhhhhcccCccccC
Q 040341 144 VEKAIKEKTCNALLLKVNQ-----IGSVTESIEAVKMSKRAGWGVMASHRSGET---ED---TFIADLSVGLATGQIKTG 212 (251)
Q Consensus 144 i~~~i~~~a~n~ilIK~nq-----iGtlte~l~~~~~a~~~g~~~ivs~rsgEt---~d---~~iadLAva~~~~~ik~G 212 (251)
++.|+++++ ++|-+-+|- --.+.+.-++++.|++.|++++.-.-.|+. +. ...+-+|+-+|+.++|+-
T Consensus 100 VeeAvrlGA-dAV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~G~Plla~~prG~~~~~~~~~ia~aaRiaaELGADiVK~~ 178 (264)
T PRK08227 100 MEDAVRLNA-CAVAAQVFIGSEYEHQSIKNIIQLVDAGLRYGMPVMAVTAVGKDMVRDARYFSLATRIAAEMGAQIIKTY 178 (264)
T ss_pred HHHHHHCCC-CEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEecCCCCcCchHHHHHHHHHHHHHHcCCEEecC
Confidence 455777754 455554432 235677778888999999999874433442 11 234567788888888887
Q ss_pred CC
Q 040341 213 AP 214 (251)
Q Consensus 213 ~~ 214 (251)
-|
T Consensus 179 y~ 180 (264)
T PRK08227 179 YV 180 (264)
T ss_pred CC
Confidence 65
No 262
>PRK12677 xylose isomerase; Provisional
Probab=39.16 E-value=2.1e+02 Score=27.26 Aligned_cols=23 Identities=4% Similarity=0.172 Sum_probs=17.8
Q ss_pred cHHHHHHHHHHHHHcCCcEEEec
Q 040341 165 SVTESIEAVKMSKRAGWGVMASH 187 (251)
Q Consensus 165 tlte~l~~~~~a~~~g~~~ivs~ 187 (251)
.+..+.+++++|++.|.+.++-+
T Consensus 112 Ai~~~~r~IdlA~eLGa~~Vvv~ 134 (384)
T PRK12677 112 ALRKVLRNIDLAAELGAKTYVMW 134 (384)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEe
Confidence 35667899999999999875543
No 263
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=39.05 E-value=2.9e+02 Score=24.82 Aligned_cols=118 Identities=12% Similarity=0.173 Sum_probs=68.3
Q ss_pred HHHHHHHHhcCCccceeeeeehhhhcccccCCcceeecCCCCCCCCCCccChhhHHHHHHHhhhcCCce-------eecC
Q 040341 36 ELLKTAIAKGGYIGKIVIGMDVAASEFYDSKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHPIV-------SIED 108 (251)
Q Consensus 36 ~~i~~Ai~~aGy~~kI~iglD~Aase~~~~~~g~Y~l~~~~~~~d~~~~~s~~elid~~~~l~~~ypI~-------~IED 108 (251)
+++.+++++-| .+|.+++|+--. +=-+.=+. ....+++.|++..|.+ +++- +-|=
T Consensus 112 ~~v~~~~~~~g--~rivv~lD~r~g--------~vav~GW~----e~s~~~~~~l~~~~~~----~g~~~ii~TdI~~DG 173 (241)
T COG0106 112 DLVKELCEEYG--DRIVVALDARDG--------KVAVSGWQ----EDSGVELEELAKRLEE----VGLAHILYTDISRDG 173 (241)
T ss_pred HHHHHHHHHcC--CcEEEEEEccCC--------cccccccc----ccccCCHHHHHHHHHh----cCCCeEEEEeccccc
Confidence 45667776666 578888887311 11111010 1233455555444443 3422 2244
Q ss_pred CCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhc-cCcceeEeec--cccccHHHHHHHHH
Q 040341 109 PFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKE-KTCNALLLKV--NQIGSVTESIEAVK 174 (251)
Q Consensus 109 P~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~-~a~n~ilIK~--nqiGtlte~l~~~~ 174 (251)
-+.-=|++...+|.+.+ ++|++.-- =|++.++|+..-+. +..-+++=|- .--.++.|++++++
T Consensus 174 tl~G~n~~l~~~l~~~~--~ipviaSG-Gv~s~~Di~~l~~~~G~~GvIvG~ALy~g~~~l~ea~~~~~ 239 (241)
T COG0106 174 TLSGPNVDLVKELAEAV--DIPVIASG-GVSSLDDIKALKELSGVEGVIVGRALYEGKFTLEEALACVR 239 (241)
T ss_pred ccCCCCHHHHHHHHHHh--CcCEEEec-CcCCHHHHHHHHhcCCCcEEEEehHHhcCCCCHHHHHHHHh
Confidence 55566899999999999 56665444 37889999987776 4444444331 22357788887765
No 264
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=39.04 E-value=44 Score=27.17 Aligned_cols=51 Identities=16% Similarity=0.277 Sum_probs=39.0
Q ss_pred ceeEeeccccccHHHHHHHHHHHHHcCCcEEEecCCCCCCchhHhhhhhhc
Q 040341 154 NALLLKVNQIGSVTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGL 204 (251)
Q Consensus 154 n~ilIK~nqiGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d~~iadLAva~ 204 (251)
+-++|=+++-|.-.+++++++.|+++|.+++.=....++.-...+|+.+-+
T Consensus 80 ~D~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~s~l~~~ad~~l~~ 130 (154)
T TIGR00441 80 GDVLLGISTSGNSKNVLKAIEAAKDKGMKTITLAGKDGGKMAGLADIELRV 130 (154)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCCEEEEe
Confidence 345666788899999999999999999998776666666656666765544
No 265
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=38.93 E-value=1.8e+02 Score=26.19 Aligned_cols=44 Identities=11% Similarity=0.247 Sum_probs=29.9
Q ss_pred cHHHHHHHHHHHHHcCCcEEEecCCCCCCchhHhhhhhhcccCccccCCCCchhH
Q 040341 165 SVTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSER 219 (251)
Q Consensus 165 tlte~l~~~~~a~~~g~~~ivs~rsgEt~d~~iadLAva~~~~~ik~G~~~r~Er 219 (251)
++.|+..+++.|+ .+||. ||-..|||.|++...+=.=+|....+
T Consensus 241 sL~el~ali~~a~-----l~I~~------DSGp~HlAaA~~~P~i~lfG~t~p~~ 284 (334)
T TIGR02195 241 SLDEAVDLIALAK-----AVVTN------DSGLMHVAAALNRPLVALYGSTSPDF 284 (334)
T ss_pred CHHHHHHHHHhCC-----EEEee------CCHHHHHHHHcCCCEEEEECCCChhh
Confidence 6777776666543 66665 56788999999998875444544444
No 266
>cd03768 SR_ResInv Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some
Probab=38.73 E-value=1.3e+02 Score=22.93 Aligned_cols=79 Identities=16% Similarity=0.170 Sum_probs=45.9
Q ss_pred ChhhHHHHHHHhhhcCCceeecCCCC-cccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeeccccc
Q 040341 86 SGDGLKNVYRSFISDHPIVSIEDPFD-QDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIG 164 (251)
Q Consensus 86 s~~elid~~~~l~~~ypI~~IEDP~~-e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqiG 164 (251)
+.+.+.+.+.++. ..--++.|..-. ..+..+|.+|.+.+. -+|-+.|.+..|+.+
T Consensus 13 ~~~~Q~~~l~~~~-~~~~~~~D~~s~~~~~R~~~~~ll~~~~-----~~d~lvv~~~dRl~R------------------ 68 (126)
T cd03768 13 SLERQLEALKAAG-ECDKIFEEKGSGGKKERPELQKLLEDLR-----EGDTLVVTKLDRLGR------------------ 68 (126)
T ss_pred CHHHHHHHHHHcC-CcceEEEEccccCCcCCHHHHHHHHhCc-----CCCEEEEEEcchhcC------------------
Confidence 4444455555543 111123333222 145677888777662 245555555555332
Q ss_pred cHHHHHHHHHHHHHcCCcEEEecC
Q 040341 165 SVTESIEAVKMSKRAGWGVMASHR 188 (251)
Q Consensus 165 tlte~l~~~~~a~~~g~~~ivs~r 188 (251)
...+.+..++.++++|+.+++-..
T Consensus 69 ~~~e~~~~~~~l~~~gi~l~~~~~ 92 (126)
T cd03768 69 STKDLLEIVEELREKGVSLRSLTE 92 (126)
T ss_pred cHHHHHHHHHHHHHCCCEEEEecC
Confidence 346788899999999999998743
No 267
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=38.58 E-value=1.4e+02 Score=27.10 Aligned_cols=76 Identities=14% Similarity=0.180 Sum_probs=51.6
Q ss_pred cHHHHHHHHhhhCCceEEEc-ccccccCHHHHHHHHhccCcceeEee-ccccccHHHHHHHHHHHHHcCCcEEEecCC
Q 040341 114 DWEHHAELTGKIGRHVQIVG-DDLLVTNPKRVEKAIKEKTCNALLLK-VNQIGSVTESIEAVKMSKRAGWGVMASHRS 189 (251)
Q Consensus 114 D~~~~~~l~~~lg~~~~ivg-Ddl~vtn~~~i~~~i~~~a~n~ilIK-~nqiGtlte~l~~~~~a~~~g~~~ivs~rs 189 (251)
.+..|.+..+..|-++..+- |+-...++++++++++.+....+.+- .|-.|++...-+++++|+++|..++|-..-
T Consensus 115 ~h~~~~~~~~~~G~~~~~v~~~~~~~~d~~~l~~~l~~~~~~vv~~~~~~~tG~~~~~~~i~~l~~~~~~~livD~a~ 192 (373)
T TIGR03812 115 AHFSFEKAAEMLGLELRYAPLDEDYTVDVKDVEDLIDDNTIGIVGIAGTTELGQIDDIEELSKIALENGIYLHVDAAF 192 (373)
T ss_pred chHHHHHHHHHcCCeEEEEeeCCCCCcCHHHHHHHHhhCcEEEEEECCCCCCCccCCHHHHHHHHHHcCCeEEEEcCc
Confidence 34567777777766655443 33244589999998876542233333 256788888889999999999888877643
No 268
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=38.53 E-value=1.4e+02 Score=28.00 Aligned_cols=77 Identities=19% Similarity=0.187 Sum_probs=46.9
Q ss_pred HHHHHhhhCCceEEEccccccc-C--HHHHHHHHhccCcceeEe-eccccccHHHHHHHHHHHHHcCCcEEEecCCCCCC
Q 040341 118 HAELTGKIGRHVQIVGDDLLVT-N--PKRVEKAIKEKTCNALLL-KVNQIGSVTESIEAVKMSKRAGWGVMASHRSGETE 193 (251)
Q Consensus 118 ~~~l~~~lg~~~~ivgDdl~vt-n--~~~i~~~i~~~a~n~ilI-K~nqiGtlte~l~~~~~a~~~g~~~ivs~rsgEt~ 193 (251)
...+.++++.++.||.|..+.. + .+++...++....+.... .+..--++....++++++++.+..++|+-.-|-.-
T Consensus 20 l~~~~~~~~~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~i 99 (382)
T cd08187 20 LGKELKKYGKKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRLETVREGIELCKEEKVDFILAVGGGSVI 99 (382)
T ss_pred HHHHHHHhCCEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEEEeCChHHH
Confidence 3333444466787887763332 2 356666665433343332 22223477888888889999999999988755553
Q ss_pred c
Q 040341 194 D 194 (251)
Q Consensus 194 d 194 (251)
|
T Consensus 100 D 100 (382)
T cd08187 100 D 100 (382)
T ss_pred H
Confidence 3
No 269
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=38.26 E-value=2e+02 Score=26.89 Aligned_cols=68 Identities=18% Similarity=0.194 Sum_probs=38.8
Q ss_pred CceEEEcccccccC--HHHHHHHHhccCcceeEe-eccccccHHHHHHHHHHHHHcCCcEEEecCCCCCCc
Q 040341 127 RHVQIVGDDLLVTN--PKRVEKAIKEKTCNALLL-KVNQIGSVTESIEAVKMSKRAGWGVMASHRSGETED 194 (251)
Q Consensus 127 ~~~~ivgDdl~vtn--~~~i~~~i~~~a~n~ilI-K~nqiGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d 194 (251)
.++.||.|.....+ .+++...++......... .+..--+++...++++.+++.+..++|+-.-|-.-|
T Consensus 27 ~~~lvvt~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGS~~D 97 (374)
T cd08189 27 KKVLIVTDKGLVKLGLLDKVLEALEGAGIEYAVYDGVPPDPTIENVEAGLALYRENGCDAILAVGGGSVID 97 (374)
T ss_pred CeEEEEeCcchhhcccHHHHHHHHHhcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccHHH
Confidence 46666666532221 345554444322222222 122225777888888889999999998887555544
No 270
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=38.24 E-value=2.4e+02 Score=27.54 Aligned_cols=117 Identities=15% Similarity=0.229 Sum_probs=65.6
Q ss_pred HHHHHHhhhc-CCceeecCCCC--cccHHHHHHHHhhhCCceEE-EcccccccCHHHHHHHHhccCcceeEe--eccc--
Q 040341 91 KNVYRSFISD-HPIVSIEDPFD--QDDWEHHAELTGKIGRHVQI-VGDDLLVTNPKRVEKAIKEKTCNALLL--KVNQ-- 162 (251)
Q Consensus 91 id~~~~l~~~-ypI~~IEDP~~--e~D~~~~~~l~~~lg~~~~i-vgDdl~vtn~~~i~~~i~~~a~n~ilI--K~nq-- 162 (251)
.+....|++. ..++.+..+-. ..=++.-+.+.++.. .++| +|+ |.+++.++.+++.|+ ++|-+ -|+.
T Consensus 230 ~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i~~~~p-~~~vi~g~---v~t~e~a~~l~~aGa-d~i~vg~g~gs~~ 304 (486)
T PRK05567 230 EERAEALVEAGVDVLVVDTAHGHSEGVLDRVREIKAKYP-DVQIIAGN---VATAEAARALIEAGA-DAVKVGIGPGSIC 304 (486)
T ss_pred HHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHHHhhCC-CCCEEEec---cCCHHHHHHHHHcCC-CEEEECCCCCccc
Confidence 4555555543 33666664422 222233344444442 3554 455 568888888887654 34322 1221
Q ss_pred ---------cccHHHHHHHHHHHHHcCCcEEEecCCCCCCchhHhhhhhhcccCccccCCCC
Q 040341 163 ---------IGSVTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPC 215 (251)
Q Consensus 163 ---------iGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d~~iadLAva~~~~~ik~G~~~ 215 (251)
+.+++-..++.+.|++.+..+|.+..---..| +=-|+++|+..+..|++-
T Consensus 305 ~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~~~~d---i~kAla~GA~~v~~G~~~ 363 (486)
T PRK05567 305 TTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIRYSGD---IAKALAAGASAVMLGSML 363 (486)
T ss_pred cceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCCCHHH---HHHHHHhCCCEEEECccc
Confidence 23566666777777788898888554222211 445667788888888764
No 271
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=38.04 E-value=74 Score=28.97 Aligned_cols=85 Identities=22% Similarity=0.320 Sum_probs=59.4
Q ss_pred ccChhhHHHHHHHhhhcCCceeecCCCCcccHHHHHHHHhhhCCceEEEcccccc-----------------------c-
Q 040341 84 KVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLV-----------------------T- 139 (251)
Q Consensus 84 ~~s~~elid~~~~l~~~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~v-----------------------t- 139 (251)
..|.+|+-..+.+ +..|.+.++|+-+... .++.+-||++-+||+-..- |
T Consensus 53 ~vT~ed~~~~~~r-ls~ysiys~e~elr~G------yit~~ggHRVg~~g~~~~E~~~vkt~rdI~slniRv~r~v~Gt~ 125 (308)
T COG3854 53 GVTKEDLQKTLNR-LSGYSIYSVEEELRAG------YITIRGGHRVGLAGNVTLEEGKVKTIRDISSLNIRVARQVFGTA 125 (308)
T ss_pred cccHHHHHHHHHH-hcccccccchhhhhcc------eeEeeccceeeeccccccccccccceeeeceeeeeehhhhhccc
Confidence 3677886555555 6999999999766532 3456678888888885211 1
Q ss_pred CHHHHHHHHhccCcceeEeeccccccHHHHHHHHHHH
Q 040341 140 NPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMS 176 (251)
Q Consensus 140 n~~~i~~~i~~~a~n~ilIK~nqiGtlte~l~~~~~a 176 (251)
|| -++-..+.++.|.++|-|-|+|--|-.-+++++.
T Consensus 126 ~~-li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~ 161 (308)
T COG3854 126 NP-LIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLL 161 (308)
T ss_pred hH-HHHHHHhcCceeeEEecCCCCChHHHHHHHHHHh
Confidence 22 4444566788889999999998888777777763
No 272
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=37.93 E-value=97 Score=30.20 Aligned_cols=136 Identities=20% Similarity=0.231 Sum_probs=76.7
Q ss_pred CcHHHHHHHHHHHHhcCCccceeeeeehhhhcccccCCcceeecCCCCCCCCCCccChhhHHHHHHHhhhc-CC--ceee
Q 040341 30 ESYEGFELLKTAIAKGGYIGKIVIGMDVAASEFYDSKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISD-HP--IVSI 106 (251)
Q Consensus 30 ~~eeal~~i~~Ai~~aGy~~kI~iglD~Aase~~~~~~g~Y~l~~~~~~~d~~~~~s~~elid~~~~l~~~-yp--I~~I 106 (251)
.+++.++-++.++ +.||+-=+-+|.|++ .|-.++.. + ..+-.+|++.+.+ ++. +- +.|
T Consensus 174 ~~e~Il~ev~~Lv-~~G~kEI~L~gqdv~----------aYG~D~~~-----~-~~~l~~Ll~~l~~-I~G~~riR~~~- 234 (437)
T COG0621 174 PPEDILKEVKRLV-AQGVKEIVLTGQDVN----------AYGKDLGG-----G-KPNLADLLRELSK-IPGIERIRFGS- 234 (437)
T ss_pred CHHHHHHHHHHHH-HCCCeEEEEEEEehh----------hccccCCC-----C-ccCHHHHHHHHhc-CCCceEEEEec-
Confidence 4689999999988 899987788889884 46544321 1 3455566555555 331 11 233
Q ss_pred cCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeeccccccHHHHHHHHHHHHHc------C
Q 040341 107 EDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRA------G 180 (251)
Q Consensus 107 EDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqiGtlte~l~~~~~a~~~------g 180 (251)
-.|..-+| ..-++-+... ++.=-.+ +.+.+ ..+-||=.++|-.|..+.+++++.-++. +
T Consensus 235 ~~P~~~~d--~lI~~~~~~~-kv~~~lH-lPvQs-----------Gsd~ILk~M~R~yt~e~~~~~i~k~R~~~Pd~~i~ 299 (437)
T COG0621 235 SHPLEFTD--DLIEAIAETP-KVCPHLH-LPVQS-----------GSDRILKRMKRGYTVEEYLEIIEKLRAARPDIAIS 299 (437)
T ss_pred CCchhcCH--HHHHHHhcCC-ccccccc-Ccccc-----------CCHHHHHHhCCCcCHHHHHHHHHHHHHhCCCceEe
Confidence 34544333 1222222210 1100011 22221 2223333478889999999999988754 3
Q ss_pred CcEEEecCCCCCCchhHhhh
Q 040341 181 WGVMASHRSGETEDTFIADL 200 (251)
Q Consensus 181 ~~~ivs~rsgEt~d~~iadL 200 (251)
-.+|||+- |||+.+|=.-+
T Consensus 300 tDiIVGFP-gETeedFe~tl 318 (437)
T COG0621 300 TDIIVGFP-GETEEDFEETL 318 (437)
T ss_pred ccEEEECC-CCCHHHHHHHH
Confidence 45588885 99988774433
No 273
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=37.64 E-value=1.7e+02 Score=27.17 Aligned_cols=73 Identities=21% Similarity=0.248 Sum_probs=45.1
Q ss_pred HhhhCCceEEEccccccc---CHHHHHHHHhccCcceeEe-eccccccHHHHHHHHHHHHHcCCcEEEecCCCCCCc
Q 040341 122 TGKIGRHVQIVGDDLLVT---NPKRVEKAIKEKTCNALLL-KVNQIGSVTESIEAVKMSKRAGWGVMASHRSGETED 194 (251)
Q Consensus 122 ~~~lg~~~~ivgDdl~vt---n~~~i~~~i~~~a~n~ilI-K~nqiGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d 194 (251)
.+++|.++.||.|..+.. -.+++...++....+.... .+-.--++....++++.+++.+..++|+-.-|-.-|
T Consensus 21 ~~~~g~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGSviD 97 (357)
T cd08181 21 LAALGKRALIVTGKSSAKKNGSLDDVTKALEELGIEYEIFDEVEENPSLETIMEAVEIAKKFNADFVIGIGGGSPLD 97 (357)
T ss_pred HHHcCCEEEEEeCCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchHHH
Confidence 344456777777763322 1355666655433333322 122235888888999999999999999987555533
No 274
>PRK15482 transcriptional regulator MurR; Provisional
Probab=37.62 E-value=1.6e+02 Score=26.20 Aligned_cols=55 Identities=15% Similarity=0.257 Sum_probs=44.9
Q ss_pred ceeEeeccccccHHHHHHHHHHHHHcCCcEEEecCCCCCCchhHhhhhhhcccCc
Q 040341 154 NALLLKVNQIGSVTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLATGQ 208 (251)
Q Consensus 154 n~ilIK~nqiGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d~~iadLAva~~~~~ 208 (251)
+-++|=.+.-|--.+++++++.|+++|.+++.=..+..+.-...+|..+-..++.
T Consensus 183 ~Dv~i~iS~sg~t~~~~~~~~~a~~~g~~iI~IT~~~~s~la~~ad~~l~~~~~~ 237 (285)
T PRK15482 183 GDVQIAISYSGSKKEIVLCAEAARKQGATVIAITSLADSPLRRLAHFTLDTVSGE 237 (285)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchHHhCCEEEEcCCCc
Confidence 3456667888999999999999999999998877778888888888887665543
No 275
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=37.61 E-value=2e+02 Score=24.38 Aligned_cols=66 Identities=15% Similarity=0.064 Sum_probs=53.4
Q ss_pred HHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeeccccccHHHHHHHHHHHHHcC----CcEEEecCC
Q 040341 121 LTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAG----WGVMASHRS 189 (251)
Q Consensus 121 l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqiGtlte~l~~~~~a~~~g----~~~ivs~rs 189 (251)
+-+.-|-++.-.|-++ .++++.+++....++.|.|......++....+.++..++.| +.+|||.+.
T Consensus 107 ~l~~~G~~vi~LG~~v---p~e~~v~~~~~~~pd~v~lS~~~~~~~~~~~~~i~~l~~~~~~~~v~i~vGG~~ 176 (197)
T TIGR02370 107 MLRANGFDVIDLGRDV---PIDTVVEKVKKEKPLMLTGSALMTTTMYGQKDINDKLKEEGYRDSVKFMVGGAP 176 (197)
T ss_pred HHHhCCcEEEECCCCC---CHHHHHHHHHHcCCCEEEEccccccCHHHHHHHHHHHHHcCCCCCCEEEEEChh
Confidence 3344466787788874 67888889999999999999888888888889999888885 568999873
No 276
>PRK05660 HemN family oxidoreductase; Provisional
Probab=37.59 E-value=1.9e+02 Score=27.15 Aligned_cols=109 Identities=13% Similarity=0.257 Sum_probs=62.1
Q ss_pred CccChhhHHHHHHHhhhcCCc-----eeecC-CCCcccHHHHHHHHhhhC-CceEEEcccccccCHHHHHHHHhccCcce
Q 040341 83 QKVSGDGLKNVYRSFISDHPI-----VSIED-PFDQDDWEHHAELTGKIG-RHVQIVGDDLLVTNPKRVEKAIKEKTCNA 155 (251)
Q Consensus 83 ~~~s~~elid~~~~l~~~ypI-----~~IED-P~~e~D~~~~~~l~~~lg-~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ 155 (251)
..++++++.++...+-+.||+ ++||= |-. =+.+.+..|.+ .| .++.|--+.+ +++.++
T Consensus 70 s~l~~~~l~~ll~~l~~~~~~~~~~eit~e~np~~-l~~e~l~~Lk~-~Gv~risiGvqS~---~~~~L~---------- 134 (378)
T PRK05660 70 SLFSAEAIQRLLDGVRARLPFAPDAEITMEANPGT-VEADRFVGYQR-AGVNRISIGVQSF---SEEKLK---------- 134 (378)
T ss_pred ccCCHHHHHHHHHHHHHhCCCCCCcEEEEEeCcCc-CCHHHHHHHHH-cCCCEEEeccCcC---CHHHHH----------
Confidence 356778877766654344553 34442 211 12344444432 34 2444433321 233322
Q ss_pred eEeeccccccHHHHHHHHHHHHHcCCcE----EEecCCCCCCchhHhhhhhh--cccCcc
Q 040341 156 LLLKVNQIGSVTESIEAVKMSKRAGWGV----MASHRSGETEDTFIADLSVG--LATGQI 209 (251)
Q Consensus 156 ilIK~nqiGtlte~l~~~~~a~~~g~~~----ivs~rsgEt~d~~iadLAva--~~~~~i 209 (251)
++++..+..+++++++.+++.|+.. ++-.-.|+|.+++..+|..+ +++.+|
T Consensus 135 ---~l~r~~~~~~~~~ai~~~~~~G~~~v~~dli~Glpgqt~~~~~~~l~~~~~l~p~~i 191 (378)
T PRK05660 135 ---RLGRIHGPDEAKRAAKLAQGLGLRSFNLDLMHGLPDQSLEEALDDLRQAIALNPPHL 191 (378)
T ss_pred ---HhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHhcCCCeE
Confidence 4677889999999999999999953 33334588988887766554 444444
No 277
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=37.50 E-value=35 Score=28.03 Aligned_cols=56 Identities=27% Similarity=0.510 Sum_probs=40.9
Q ss_pred CCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeeccccccHHHHHHHHHH
Q 040341 109 PFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKM 175 (251)
Q Consensus 109 P~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqiGtlte~l~~~~~ 175 (251)
=|...++++| ++++-+. . +++-| .|-+|+-|+.|+. +|+ ++|-+-|.-..+++++.
T Consensus 57 yf~r~~iD~w-EvrkglN--~-l~~yD-lVP~pkvIEaaLR--A~R----RvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 57 YFNRPEIDGW-EVRKGLN--N-LFDYD-LVPSPKVIEAALR--ACR----RVNDFATAVRILEAIKD 112 (149)
T ss_pred HcCcccchHH-HHHHHHH--h-hhccc-cCCChHHHHHHHH--HHH----HhccHHHHHHHHHHHHH
Confidence 3566788999 7888883 2 66777 5999999999865 676 46666666666666663
No 278
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=37.45 E-value=1.6e+02 Score=28.44 Aligned_cols=45 Identities=13% Similarity=0.170 Sum_probs=33.6
Q ss_pred eccccccHHHHHHHHHHHHHcC-CcE----EEecCCCCCCchhHhhhhhhc
Q 040341 159 KVNQIGSVTESIEAVKMSKRAG-WGV----MASHRSGETEDTFIADLSVGL 204 (251)
Q Consensus 159 K~nqiGtlte~l~~~~~a~~~g-~~~----ivs~rsgEt~d~~iadLAva~ 204 (251)
++++.-+..+++++++.+++.| ..+ |.|- .|+|.+++..||..+.
T Consensus 191 ~lgR~~~~~~~~~~i~~l~~~g~~~v~~DlI~Gl-PgqT~e~~~~~l~~~~ 240 (449)
T PRK09058 191 RAGRKDDREEVLARLEELVARDRAAVVCDLIFGL-PGQTPEIWQQDLAIVR 240 (449)
T ss_pred HhCCCCCHHHHHHHHHHHHhCCCCcEEEEEEeeC-CCCCHHHHHHHHHHHH
Confidence 3567778999999999999998 444 3344 4899988887765544
No 279
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=37.24 E-value=47 Score=33.24 Aligned_cols=57 Identities=16% Similarity=0.236 Sum_probs=43.4
Q ss_pred CcceeEeeccccccHHHHHHHHHHHHHcCCcEEEecCCCCCCchhHhhhhhhcccCc
Q 040341 152 TCNALLLKVNQIGSVTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLATGQ 208 (251)
Q Consensus 152 a~n~ilIK~nqiGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d~~iadLAva~~~~~ 208 (251)
..+.++|=++|-|.-.+++++++.|++.|..++.=....++.-...+|..+-+.++.
T Consensus 335 ~~~dlvI~iS~SG~T~e~i~a~~~ak~~ga~~IaIT~~~~S~La~~aD~~l~~~~~~ 391 (604)
T PRK00331 335 SPKTLVIAISQSGETADTLAALRLAKELGAKTLAICNVPGSTIARESDAVLYTHAGP 391 (604)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHCCCCEEEEECCCCChhHHhcCcEEEecCcC
Confidence 345677888999999999999999999998886555556666666677666555443
No 280
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=37.20 E-value=2e+02 Score=26.91 Aligned_cols=68 Identities=15% Similarity=0.159 Sum_probs=43.1
Q ss_pred CceEEEcccccccC--HHHHHHHHhccCcceeEe-eccccccHHHHHHHHHHHHHcCCcEEEecCCCCCCc
Q 040341 127 RHVQIVGDDLLVTN--PKRVEKAIKEKTCNALLL-KVNQIGSVTESIEAVKMSKRAGWGVMASHRSGETED 194 (251)
Q Consensus 127 ~~~~ivgDdl~vtn--~~~i~~~i~~~a~n~ilI-K~nqiGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d 194 (251)
.++.||.|.....+ .+++...++....+.... .+..--++....++++.+++.+..++|+-.-|-.-|
T Consensus 27 ~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGs~iD 97 (376)
T cd08193 27 KRVLVVTDPGILKAGLIDPLLASLEAAGIEVTVFDDVEADPPEAVVEAAVEAARAAGADGVIGFGGGSSMD 97 (376)
T ss_pred CeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchHHH
Confidence 46777777632222 456655554433333322 233445888888899999999999999997565544
No 281
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=37.08 E-value=3.3e+02 Score=24.92 Aligned_cols=111 Identities=16% Similarity=0.159 Sum_probs=60.9
Q ss_pred ChhhHHHHHHHhhh----cCC-ceeecCCCCccc---HHHHHHHHhhhCC-ceEEEcccccccCHHHHHHHHhccCccee
Q 040341 86 SGDGLKNVYRSFIS----DHP-IVSIEDPFDQDD---WEHHAELTGKIGR-HVQIVGDDLLVTNPKRVEKAIKEKTCNAL 156 (251)
Q Consensus 86 s~~elid~~~~l~~----~yp-I~~IEDP~~e~D---~~~~~~l~~~lg~-~~~ivgDdl~vtn~~~i~~~i~~~a~n~i 156 (251)
..++....+.+-++ +|- +..|=-|....+ -+.|+.|.+.... ++-=+| ++-.+++.++++++. ..+
T Consensus 83 ~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~~~~~~~etw~alE~l~~~G~ir~IG--VSNF~~~~L~~l~~~---~~~ 157 (280)
T COG0656 83 GYDETLKALEASLKRLGLDYVDLYLIHWPVPNKYVVIEETWKALEELVDEGLIRAIG--VSNFGVEHLEELLSL---AKV 157 (280)
T ss_pred CcchHHHHHHHHHHHhCCCceeEEEECCCCCccCccHHHHHHHHHHHHhcCCccEEE--eeCCCHHHHHHHHHh---cCC
Confidence 33444444444333 343 788888976322 2778877665521 444444 234578888888765 222
Q ss_pred Eeecccc--ccHHHHHHHHHHHHHcCCcEEEecCCC----CCCchhHhhhh
Q 040341 157 LLKVNQI--GSVTESIEAVKMSKRAGWGVMASHRSG----ETEDTFIADLS 201 (251)
Q Consensus 157 lIK~nqi--Gtlte~l~~~~~a~~~g~~~ivs~rsg----Et~d~~iadLA 201 (251)
.+=.||| .-...--+++..|+++|+.++-=+--+ --.++.+.++|
T Consensus 158 ~p~~NQIe~hp~~~q~el~~~~~~~gI~v~AysPL~~g~~l~~~~~l~~Ia 208 (280)
T COG0656 158 KPAVNQIEYHPYLRQPELLPFCQRHGIAVEAYSPLAKGGKLLDNPVLAEIA 208 (280)
T ss_pred CCceEEEEeccCCCcHHHHHHHHHcCCEEEEECCcccccccccChHHHHHH
Confidence 2223443 122222348999999999885433222 33455555555
No 282
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=37.06 E-value=1.4e+02 Score=27.81 Aligned_cols=102 Identities=19% Similarity=0.194 Sum_probs=64.9
Q ss_pred eeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEee-c-cccccHHHHHHHHHHHHHcCC
Q 040341 104 VSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK-V-NQIGSVTESIEAVKMSKRAGW 181 (251)
Q Consensus 104 ~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK-~-nqiGtlte~l~~~~~a~~~g~ 181 (251)
+.+.+|....-+..|..+.++.|-++..+ | +.+++.+++++..+ ...|.+- | |-.|++.+.-++.++|+++|+
T Consensus 96 Vl~~~~~~~~t~~~~~~~~~~~g~~v~~v-~---~~d~~~l~~~i~~~-tklV~le~p~np~g~~~dl~~I~~la~~~gi 170 (380)
T TIGR01325 96 VVASRSLFGSTVGFISEILPRFGIEVSFV-D---PTDLNAWEAAVKPN-TKLVFVETPSNPLGELVDIAALAELAHAIGA 170 (380)
T ss_pred EEEecCCcchHHHHHHHHHHHhCCEEEEE-C---CCCHHHHHHhcCCC-ceEEEEECCCCCCCeeeCHHHHHHHHHHcCC
Confidence 44566766555566766667776555444 2 23678888877543 3455543 5 457888888899999999999
Q ss_pred cEEEecCCCC----CCchhHhhhhhhcccCccc
Q 040341 182 GVMASHRSGE----TEDTFIADLSVGLATGQIK 210 (251)
Q Consensus 182 ~~ivs~rsgE----t~d~~iadLAva~~~~~ik 210 (251)
.++|-.--.. ..-..-+|+.+.+...++-
T Consensus 171 ~livD~a~~~~~~~~pl~~g~Divv~S~sK~l~ 203 (380)
T TIGR01325 171 LLVVDNVFATPVLQQPLKLGADVVVYSATKHID 203 (380)
T ss_pred EEEEECCCcccccCCchhhCCCEEEeeccceec
Confidence 9887554221 1112236888876666554
No 283
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=36.97 E-value=4e+02 Score=25.86 Aligned_cols=151 Identities=13% Similarity=0.172 Sum_probs=81.4
Q ss_pred CCccChhhHHHHHHHhhhc-CC-ceeecCCCC-----ccc-----HHHHHHHHhhhC-----CceEEEcccccccCHHHH
Q 040341 82 SQKVSGDGLKNVYRSFISD-HP-IVSIEDPFD-----QDD-----WEHHAELTGKIG-----RHVQIVGDDLLVTNPKRV 144 (251)
Q Consensus 82 ~~~~s~~elid~~~~l~~~-yp-I~~IEDP~~-----e~D-----~~~~~~l~~~lg-----~~~~ivgDdl~vtn~~~i 144 (251)
-++.+++++++-.+.|.++ |. |+++=|-+. .++ -..+..|.+.+. .++.+..-....-+.+.+
T Consensus 194 ~rsrs~e~Vv~Ei~~l~~~g~~eI~l~~~~~~~y~~d~~~~~~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~l~~ell 273 (467)
T PRK14329 194 ERSRDPESILNEVRDLFAKGYKEVTLLGQNVDSYLWYGGGLKKDEAVNFAQLLEMVAEAVPDMRIRFSTSHPKDMTDDVL 273 (467)
T ss_pred cccCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccCCccccccccHHHHHHHHHhcCCCcEEEEecCCcccCCHHHH
Confidence 3578999999988887765 44 554433322 111 123445554431 133332211011134444
Q ss_pred HHHHhcc-CcceeEe-----------eccccccHHHHHHHHHHHHHcC--C----cEEEecCCCCCCchhHhhh--hhhc
Q 040341 145 EKAIKEK-TCNALLL-----------KVNQIGSVTESIEAVKMSKRAG--W----GVMASHRSGETEDTFIADL--SVGL 204 (251)
Q Consensus 145 ~~~i~~~-a~n~ilI-----------K~nqiGtlte~l~~~~~a~~~g--~----~~ivs~rsgEt~d~~iadL--Ava~ 204 (251)
+...+.+ .|+.+-| .+|+--|..+.+++++.+++.+ + .+|+|.. |||+++|-.-+ +-.+
T Consensus 274 ~~m~~~~~g~~~i~iglQSgsd~vLk~m~R~~t~~~~~~~i~~ir~~~~~~~i~~d~IvGfP-gET~edf~~tl~~i~~l 352 (467)
T PRK14329 274 EVMAKYDNICKHIHLPVQSGSDRILKLMNRKYTREWYLDRIDAIRRIIPDCGISTDMIAGFP-TETEEDHQDTLSLMEEV 352 (467)
T ss_pred HHHHhCCCCCCeEEeCCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEeEEEeCC-CCCHHHHHHHHHHHHhh
Confidence 4433321 3554443 4577788889999999998863 3 3477774 99999885444 4444
Q ss_pred ccCcc-------ccCCCCc---------hhHHHHhhHHHHHHHHh
Q 040341 205 ATGQI-------KTGAPCR---------SERLAKYNQLLRIEEEL 233 (251)
Q Consensus 205 ~~~~i-------k~G~~~r---------~Er~aKyN~llrie~~l 233 (251)
...++ .+|.|.- -+....+.+|.++.+++
T Consensus 353 ~~~~~~v~~~sp~pGT~~~~~~~~~v~~~~~~~R~~~l~~~~~~~ 397 (467)
T PRK14329 353 GYDFAFMFKYSERPGTYAARKLEDDVPEEVKKRRLNEIIALQQEL 397 (467)
T ss_pred CCCeEeeeEecCCCCChhhhhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 33322 3554432 12234466777766554
No 284
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=36.93 E-value=1.1e+02 Score=26.59 Aligned_cols=54 Identities=19% Similarity=0.201 Sum_probs=42.9
Q ss_pred ceeEeeccccccHHHHHHHHHHHHHcCCcEEEecCCCCCCchhHhhhhhhcccC
Q 040341 154 NALLLKVNQIGSVTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLATG 207 (251)
Q Consensus 154 n~ilIK~nqiGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d~~iadLAva~~~~ 207 (251)
+-++|=.++-|.-.+++++++.|+++|..++.=....++.-...+|+.+-+.++
T Consensus 48 ~d~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~s~l~~~~d~~l~~~~~ 101 (268)
T TIGR00393 48 NDVVLMISYSGESLELLNLIPHLKRLSHKIIAFTGSPNSSLARAADYVLDIKVE 101 (268)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHcCCcEEEEECCCCCcccccCCEEEEcCCC
Confidence 445666888899999999999999999998776666777766778887776543
No 285
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=36.75 E-value=3.4e+02 Score=25.22 Aligned_cols=152 Identities=15% Similarity=0.180 Sum_probs=82.5
Q ss_pred CCCCCcHHHHHHHHHHHHhc---CCcc-ceeeeeehhhhcccccCCcceeecCCCCCCCCCC--ccChhhHHHHHHHhh-
Q 040341 26 PNIQESYEGFELLKTAIAKG---GYIG-KIVIGMDVAASEFYDSKDKTYDLNFKEENNDGSQ--KVSGDGLKNVYRSFI- 98 (251)
Q Consensus 26 p~~~~~eeal~~i~~Ai~~a---Gy~~-kI~iglD~Aase~~~~~~g~Y~l~~~~~~~d~~~--~~s~~elid~~~~l~- 98 (251)
|.+..++++++.+.+++... +|.+ .-...+--+..+++.. .|.+.... .+- .-...+.+......+
T Consensus 45 ~~~~~~~~~~~~~~~~l~~~~~~~Y~~~~g~~~lr~~ia~~l~~---~~~~~~~~----~~ii~t~G~t~al~~~~~~l~ 117 (403)
T TIGR01265 45 GNLRTDPEAEEAVKDALRSGKFNGYAPSVGALAAREAVAEYLSS---DLPGKLTA----DDVVLTSGCSQAIEICIEALA 117 (403)
T ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHh---hcCCCCCH----HHEEEecChHHHHHHHHHHhC
Confidence 45666788999998887532 3432 1111111233344431 12111100 001 112455555554443
Q ss_pred hcCCceeecCCCCcccHHHHHHHHhhhCCceEEEc---ccccccCHHHHHHHHhccCcceeEeecc-ccccH---HHHHH
Q 040341 99 SDHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVG---DDLLVTNPKRVEKAIKEKTCNALLLKVN-QIGSV---TESIE 171 (251)
Q Consensus 99 ~~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivg---Ddl~vtn~~~i~~~i~~~a~n~ilIK~n-qiGtl---te~l~ 171 (251)
..=.-+.+++|- |..|..+.+..|-++..+- ++-+.-+++.+++.+..+..-.++.-|| -.|++ .+..+
T Consensus 118 ~~gd~Vlv~~p~----y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~ 193 (403)
T TIGR01265 118 NPGANILVPRPG----FPLYDTRAAFSGLEVRLYDLLPEKDWEIDLDGLEALADEKTVAIVVINPSNPCGSVFSRDHLQK 193 (403)
T ss_pred CCCCEEEEeCCC----chhHHHHHHHcCCEEEEecCCcccCCccCHHHHHHHhCcCccEEEEecCCCCCCCCCCHHHHHH
Confidence 222357788885 4566666667765544331 1113457888888876655445555564 35655 47888
Q ss_pred HHHHHHHcCCcEEEecC
Q 040341 172 AVKMSKRAGWGVMASHR 188 (251)
Q Consensus 172 ~~~~a~~~g~~~ivs~r 188 (251)
++++|+++|..+++-.-
T Consensus 194 i~~~a~~~~~~ii~De~ 210 (403)
T TIGR01265 194 IAEVARKLGIPIIADEI 210 (403)
T ss_pred HHHHHHHCCCEEEEEcc
Confidence 99999999988766543
No 286
>PRK09234 fbiC FO synthase; Reviewed
Probab=36.72 E-value=50 Score=34.85 Aligned_cols=110 Identities=15% Similarity=0.109 Sum_probs=61.2
Q ss_pred ccChhhHHHHHHHhhhcCC-----ceeecCCCCcccHHHHHHHHhhhC---CceEEEcc---cc-------cccCHHHHH
Q 040341 84 KVSGDGLKNVYRSFISDHP-----IVSIEDPFDQDDWEHHAELTGKIG---RHVQIVGD---DL-------LVTNPKRVE 145 (251)
Q Consensus 84 ~~s~~elid~~~~l~~~yp-----I~~IEDP~~e~D~~~~~~l~~~lg---~~~~ivgD---dl-------~vtn~~~i~ 145 (251)
.+|.+|+++...+. .+.+ |++=++|- .+++....+-+.+. ..+.|++- |+ =++..+.++
T Consensus 556 ~Ls~eeI~~~a~ea-~~~G~tev~i~gG~~p~--~~~~~y~~lir~IK~~~p~i~i~afsp~Ei~~~a~~~Gl~~~e~l~ 632 (843)
T PRK09234 556 TLSLDEVADRAWEA-WVAGATEVCMQGGIHPE--LPGTGYADLVRAVKARVPSMHVHAFSPMEIVNGAARLGLSIREWLT 632 (843)
T ss_pred cCCHHHHHHHHHHH-HHCCCCEEEEecCCCCC--cCHHHHHHHHHHHHHhCCCeeEEecChHHHHHHHHHcCCCHHHHHH
Confidence 56899988887774 4444 22225552 34555444444442 24666532 00 023334444
Q ss_pred HHHhccCccee--------------EeeccccccHHHHHHHHHHHHHcCCcE----EEecCCCCCCchhHhhh
Q 040341 146 KAIKEKTCNAL--------------LLKVNQIGSVTESIEAVKMSKRAGWGV----MASHRSGETEDTFIADL 200 (251)
Q Consensus 146 ~~i~~~a~n~i--------------lIK~nqiGtlte~l~~~~~a~~~g~~~----ivs~rsgEt~d~~iadL 200 (251)
+.-+.|. +.+ .|+|+++. ..+=+++++.|++.|+.+ |+|| +||...++.||
T Consensus 633 ~LkeAGL-ds~pgt~aeil~d~vr~~i~p~k~~-~~~wle~i~~Ah~lGi~~~stmm~G~--~Et~edrv~hl 701 (843)
T PRK09234 633 ALREAGL-DTIPGTAAEILDDEVRWVLTKGKLP-TAEWIEVVTTAHEVGLRSSSTMMYGH--VDTPRHWVAHL 701 (843)
T ss_pred HHHHhCc-CccCCCchhhCCHHHHhhcCCCCCC-HHHHHHHHHHHHHcCCCcccceEEcC--CCCHHHHHHHH
Confidence 4333322 121 25566653 445589999999999987 7787 68865544443
No 287
>PLN02535 glycolate oxidase
Probab=36.66 E-value=1.6e+02 Score=27.98 Aligned_cols=94 Identities=13% Similarity=0.180 Sum_probs=53.8
Q ss_pred ccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeec---cccccHHHHHHHHHHHHH---cCCcEEEe
Q 040341 113 DDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKV---NQIGSVTESIEAVKMSKR---AGWGVMAS 186 (251)
Q Consensus 113 ~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~---nqiGtlte~l~~~~~a~~---~g~~~ivs 186 (251)
-+|+.-+++.+.. +.||+.-+ |.++++++++++.| +++|.+-- -|.+.-..+++++..+++ ..++++++
T Consensus 210 ~tW~~i~~lr~~~--~~PvivKg--V~~~~dA~~a~~~G-vD~I~vsn~GGr~~d~~~~t~~~L~ev~~av~~~ipVi~d 284 (364)
T PLN02535 210 LSWKDIEWLRSIT--NLPILIKG--VLTREDAIKAVEVG-VAGIIVSNHGARQLDYSPATISVLEEVVQAVGGRVPVLLD 284 (364)
T ss_pred CCHHHHHHHHhcc--CCCEEEec--CCCHHHHHHHHhcC-CCEEEEeCCCcCCCCCChHHHHHHHHHHHHHhcCCCEEee
Confidence 4788888888877 67888776 47899999998875 55555531 122222223444443332 25778877
Q ss_pred cCCCCCCchhHhhhhhhcccCccccCCC
Q 040341 187 HRSGETEDTFIADLSVGLATGQIKTGAP 214 (251)
Q Consensus 187 ~rsgEt~d~~iadLAva~~~~~ik~G~~ 214 (251)
.. -.+..+.+- |+++|+..+-.|.|
T Consensus 285 GG-Ir~g~Dv~K--ALalGA~aV~vGr~ 309 (364)
T PLN02535 285 GG-VRRGTDVFK--ALALGAQAVLVGRP 309 (364)
T ss_pred CC-CCCHHHHHH--HHHcCCCEEEECHH
Confidence 75 333333333 44444544444443
No 288
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=36.53 E-value=1.8e+02 Score=27.17 Aligned_cols=73 Identities=21% Similarity=0.322 Sum_probs=41.9
Q ss_pred HhhhC-CceEEEccccccc--CHHHHHHHHhccCcceeEee-ccccccHHHHHHHHHHHHHcCCcEEEecCCCCCCc
Q 040341 122 TGKIG-RHVQIVGDDLLVT--NPKRVEKAIKEKTCNALLLK-VNQIGSVTESIEAVKMSKRAGWGVMASHRSGETED 194 (251)
Q Consensus 122 ~~~lg-~~~~ivgDdl~vt--n~~~i~~~i~~~a~n~ilIK-~nqiGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d 194 (251)
.+.+| .++.||.|..... -.++++..++.......... +..--++....++++.+++.+..++|+-.-|-.-|
T Consensus 23 l~~~g~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGS~iD 99 (377)
T cd08176 23 LKNLGFKKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVFKKEGCDFIISIGGGSPHD 99 (377)
T ss_pred HHHhCCCeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCcHHHH
Confidence 34444 4666676663222 14455555544333333331 22235677788888888888898888887555533
No 289
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=36.43 E-value=44 Score=30.38 Aligned_cols=55 Identities=13% Similarity=0.200 Sum_probs=46.9
Q ss_pred ceeEeeccccccHHHHHHHHHHHHHcCCcEEEecCCCCCCchhHhhhhhhcccCc
Q 040341 154 NALLLKVNQIGSVTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLATGQ 208 (251)
Q Consensus 154 n~ilIK~nqiGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d~~iadLAva~~~~~ 208 (251)
+.++|=+++-|.-.+++++++.|+++|.+++.=..+.++.-...+|+.+-..++.
T Consensus 95 ~d~~I~iS~sG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~la~~ad~~l~~~~~~ 149 (326)
T PRK10892 95 QDVVIAISNSGESSEILALIPVLKRLHVPLICITGRPESSMARAADIHLCVKVPK 149 (326)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEECCCCCcccccCCEEEEeCCCc
Confidence 4467778999999999999999999999998877778888888899988776544
No 290
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=36.42 E-value=4e+02 Score=25.65 Aligned_cols=144 Identities=15% Similarity=0.224 Sum_probs=91.8
Q ss_pred CcHHHHHHHHHHHHhcCCccceeee-----------eehhhhcccccCCcceeecCCCCCCCCCCccChhhHHHHHHHhh
Q 040341 30 ESYEGFELLKTAIAKGGYIGKIVIG-----------MDVAASEFYDSKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFI 98 (251)
Q Consensus 30 ~~eeal~~i~~Ai~~aGy~~kI~ig-----------lD~Aase~~~~~~g~Y~l~~~~~~~d~~~~~s~~elid~~~~l~ 98 (251)
+-+.+-++|..|| +.|+.- |.-| +--|--+.|+ .+..|..|.|. -...+++||-.++.+-+
T Consensus 32 d~~~~~~~i~~ai-e~GiNy-idTA~~Yh~g~sE~~lgkaL~~~~R---ekv~LaTKlp~---~~~~~~edm~r~fneqL 103 (391)
T COG1453 32 DEENANETIDYAI-EHGINY-IDTAWPYHGGESEEFLGKALKDGYR---EKVKLATKLPS---WPVKDREDMERIFNEQL 103 (391)
T ss_pred cHHHHHHHHHHHH-HcCCce-EeecccccCCCchHHHHHHhhhccc---ceEEEEeecCC---ccccCHHHHHHHHHHHH
Confidence 4588889999999 678751 1111 1112223332 35556655542 24567888888888777
Q ss_pred hcCCc----eeecCCCCcccHHHHHHH-------HhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeec------c
Q 040341 99 SDHPI----VSIEDPFDQDDWEHHAEL-------TGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKV------N 161 (251)
Q Consensus 99 ~~ypI----~~IEDP~~e~D~~~~~~l-------~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~------n 161 (251)
+++.. .++.-.+..++|+.-.++ +++-..++--+|=- |=.+++.+.+.+...--+-+.|.- |
T Consensus 104 ekl~~Dy~D~yliH~l~~e~~~k~~~~g~~df~~kak~eGkIr~~GFS-fHgs~e~~~~iv~a~~~dfvqlq~ny~d~~n 182 (391)
T COG1453 104 EKLGTDYIDYYLIHGLNTETWEKIERLGVFDFLEKAKAEGKIRNAGFS-FHGSTEVFKEIVDAYPWDFVQLQYNYIDQKN 182 (391)
T ss_pred HHhCCchhhhhhhccccHHHHHHHHccChHHHHHHHHhcCcEEEeeec-CCCCHHHHHHHHhcCCcceEEeeeeeeccch
Confidence 87765 466788888777665544 12223367777753 445788888888877777777765 4
Q ss_pred ccccHHHHHHHHHHHHHcCCcEEEec
Q 040341 162 QIGSVTESIEAVKMSKRAGWGVMASH 187 (251)
Q Consensus 162 qiGtlte~l~~~~~a~~~g~~~ivs~ 187 (251)
|.| .+.++.|.+.|++|+|=.
T Consensus 183 ~~~-----~~~l~~A~~~~~gI~IMe 203 (391)
T COG1453 183 QAG-----TEGLKYAASKGLGIFIME 203 (391)
T ss_pred hcc-----cHHHHHHHhCCCcEEEEe
Confidence 555 356677889999986643
No 291
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=36.32 E-value=3.3e+02 Score=25.77 Aligned_cols=122 Identities=11% Similarity=0.114 Sum_probs=71.7
Q ss_pred ChhhHHHHHHHhhhc---CCce--eecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEee-
Q 040341 86 SGDGLKNVYRSFISD---HPIV--SIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK- 159 (251)
Q Consensus 86 s~~elid~~~~l~~~---ypI~--~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK- 159 (251)
++++ .+....|++. ..++ -+-+...+.=.+.-+++.+.+.+ ++|++-. |-+++-.+..+..++ ++ ||
T Consensus 106 ~~~d-~er~~~L~~~~~g~D~iviD~AhGhs~~~i~~ik~ik~~~P~-~~vIaGN--V~T~e~a~~Li~aGA-D~--vKV 178 (346)
T PRK05096 106 SDAD-FEKTKQILALSPALNFICIDVANGYSEHFVQFVAKAREAWPD-KTICAGN--VVTGEMVEELILSGA-DI--VKV 178 (346)
T ss_pred CHHH-HHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHHhCCC-CcEEEec--ccCHHHHHHHHHcCC-CE--EEE
Confidence 3444 3666666663 2222 23344444445555666666643 5555443 456777776666543 33 44
Q ss_pred ---ccc-----------cccHHHHHHHHHHHHHcCCcEEEecCCCCCCchhHhhhhhhcccCccccCCCCch
Q 040341 160 ---VNQ-----------IGSVTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRS 217 (251)
Q Consensus 160 ---~nq-----------iGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d~~iadLAva~~~~~ik~G~~~r~ 217 (251)
|+. ...+|..+++++.|++.|.++|--..---+.|- =-|++.++..+..|++..+
T Consensus 179 GIGpGSiCtTr~vtGvG~PQltAV~~~a~~a~~~gvpiIADGGi~~sGDI---~KAlaaGAd~VMlGsllAG 247 (346)
T PRK05096 179 GIGPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGQIVSDGGCTVPGDV---AKAFGGGADFVMLGGMLAG 247 (346)
T ss_pred cccCCccccCccccccChhHHHHHHHHHHHHHHcCCCEEecCCcccccHH---HHHHHcCCCEEEeChhhcC
Confidence 222 357899999999999999977765543333221 1456677789999987544
No 292
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=36.27 E-value=89 Score=30.01 Aligned_cols=149 Identities=17% Similarity=0.203 Sum_probs=82.6
Q ss_pred CccChhhHHHHHHHhhhcCC---ceeecCCC-Cc-ccH--HHHHHHHhhh----CC-ceEEEcccccccCHHHHHHHHhc
Q 040341 83 QKVSGDGLKNVYRSFISDHP---IVSIEDPF-DQ-DDW--EHHAELTGKI----GR-HVQIVGDDLLVTNPKRVEKAIKE 150 (251)
Q Consensus 83 ~~~s~~elid~~~~l~~~yp---I~~IEDP~-~e-~D~--~~~~~l~~~l----g~-~~~ivgDdl~vtn~~~i~~~i~~ 150 (251)
++.++++.++-.+.+.+ ++ |+++=|-| .. .|+ ..+..|.+.+ |. ++.+.--....-+++.++...+.
T Consensus 173 rsr~~e~V~~Ei~~l~~-~g~~eI~l~d~~~~~y~~~~~~~~~~~Ll~~l~~~~g~~~i~~~~~~p~~l~~ell~~~~~~ 251 (437)
T PRK14331 173 RSRRLGSILDEVQWLVD-DGVKEIHLIGQNVTAYGKDIGDVPFSELLYAVAEIDGVERIRFTTGHPRDLDEDIIKAMADI 251 (437)
T ss_pred ccCCHHHHHHHHHHHHH-CCCeEEEEeeeccccccCCCCCCCHHHHHHHHhcCCCccEEEEeccCcccCCHHHHHHHHcC
Confidence 57789998888888765 34 44443222 21 121 1233444333 21 23332211111245555544333
Q ss_pred c-CcceeEe-----------eccccccHHHHHHHHHHHHHc--CCcE----EEecCCCCCCchhHhhhhhhcccC--c--
Q 040341 151 K-TCNALLL-----------KVNQIGSVTESIEAVKMSKRA--GWGV----MASHRSGETEDTFIADLSVGLATG--Q-- 208 (251)
Q Consensus 151 ~-a~n~ilI-----------K~nqiGtlte~l~~~~~a~~~--g~~~----ivs~rsgEt~d~~iadLAva~~~~--~-- 208 (251)
+ .|+.+.| ++++--|..+.+++++.++++ |+.+ |+|.- |||+++|-..+......+ +
T Consensus 252 ~~~~~~l~igiqSgsd~vLk~m~R~~t~~~~~~~v~~lr~~~~gi~i~~d~IvG~P-gET~ed~~~tl~~l~~l~~~~i~ 330 (437)
T PRK14331 252 PQVCEHLHLPFQAGSDRILKLMDRGYTKEEYLEKIELLKEYIPDITFSTDIIVGFP-TETEEDFEETLDVLKKVEFEQVF 330 (437)
T ss_pred CccCCceecccccCChHHHHHcCCCCCHHHHHHHHHHHHHhCCCCEEecCEEEECC-CCCHHHHHHHHHHHHhcCcceee
Confidence 2 2454433 467777999999999999998 7764 77874 999998865555433222 1
Q ss_pred -----cccCCC--------CchhHHHHhhHHHHHHHHh
Q 040341 209 -----IKTGAP--------CRSERLAKYNQLLRIEEEL 233 (251)
Q Consensus 209 -----ik~G~~--------~r~Er~aKyN~llrie~~l 233 (251)
..+|.| ...+...+..+|.++.+++
T Consensus 331 ~f~~sp~pGT~~~~~~~~~~~~~~~~r~~~l~~~~~~~ 368 (437)
T PRK14331 331 SFKYSPRPGTPAAYMEGQEPDEVKTKRMNRLLELQKEI 368 (437)
T ss_pred eeEecCCCCcchhhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 123322 2344456677777777664
No 293
>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]
Probab=36.18 E-value=1.7e+02 Score=28.63 Aligned_cols=75 Identities=21% Similarity=0.267 Sum_probs=49.3
Q ss_pred CHHHHHHHHhccCcceeEee-ccccc-cHHHHHHHHHHHHHcCCcEEEecCC-----CCCCchhHhhhhhhcccCc---c
Q 040341 140 NPKRVEKAIKEKTCNALLLK-VNQIG-SVTESIEAVKMSKRAGWGVMASHRS-----GETEDTFIADLSVGLATGQ---I 209 (251)
Q Consensus 140 n~~~i~~~i~~~a~n~ilIK-~nqiG-tlte~l~~~~~a~~~g~~~ivs~rs-----gEt~d~~iadLAva~~~~~---i 209 (251)
..++++.. ..+..-++++- ||-.| .+.+.-.+++.+++.|--++|+... -.....+=||++||..-.| +
T Consensus 199 d~~~l~~~-~~~~~~gv~vQyP~~~G~~~~d~~~l~~~~h~~~al~~v~aDplaL~LL~pPGe~GADIvvG~~QrfGvPm 277 (450)
T COG0403 199 DLDDLESA-DDGDVFGVLVQYPNTFGIVEEDLRALIEAAHSAGALVIVAADPLALGLLKPPGEFGADIVVGSAQRFGVPM 277 (450)
T ss_pred hhhhhhhc-cccCeEEEEEecCCCCCccchhHHHHHHHHhhcCCEEEEEechhHhhccCCccccCCceEEecCcccCCCc
Confidence 34444444 33334455555 88888 6666888899999999999888753 2234455599999987655 3
Q ss_pred ccCCCC
Q 040341 210 KTGAPC 215 (251)
Q Consensus 210 k~G~~~ 215 (251)
-.|+|.
T Consensus 278 gfGGPh 283 (450)
T COG0403 278 GFGGPH 283 (450)
T ss_pred CCCCcc
Confidence 445553
No 294
>COG2006 Uncharacterized conserved protein [Function unknown]
Probab=36.13 E-value=2.8e+02 Score=25.56 Aligned_cols=60 Identities=23% Similarity=0.301 Sum_probs=43.0
Q ss_pred CcceeEeeccc---------cccHHHHHH-HHHHHHHcCCcEEEecCCCCCCchhHhhhhhhcccCccccCCCCchhHHH
Q 040341 152 TCNALLLKVNQ---------IGSVTESIE-AVKMSKRAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLA 221 (251)
Q Consensus 152 a~n~ilIK~nq---------iGtlte~l~-~~~~a~~~g~~~ivs~rsgEt~d~~iadLAva~~~~~ik~G~~~r~Er~a 221 (251)
..+.++||||- ..|--|++. ++++.+++|-.++|+.++|-. ..+++.
T Consensus 36 ~G~~VlLKPN~lta~ppe~~~tThPevv~Av~~~v~e~g~ep~vgd~pg~~-----------------------st~~vl 92 (293)
T COG2006 36 PGDRVLLKPNLLTADPPEAPCTTHPEVVAAVAEVVKEAGGEPVVGDSPGFG-----------------------STSGVL 92 (293)
T ss_pred CCCEEEecCccccCCCCCCCCccCHHHHHHHHHHHHHhCCcceEecCCCCc-----------------------cHHHHH
Confidence 48899999984 344445555 467899999999999976632 345666
Q ss_pred HhhHHHHHHHHhC
Q 040341 222 KYNQLLRIEEELG 234 (251)
Q Consensus 222 KyN~llrie~~l~ 234 (251)
|=|=++.+.++++
T Consensus 93 k~~Gi~dla~~~~ 105 (293)
T COG2006 93 KTTGILDLAEALG 105 (293)
T ss_pred HHhCHHHHHHHcC
Confidence 6677777777765
No 295
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=35.94 E-value=1.6e+02 Score=26.74 Aligned_cols=46 Identities=9% Similarity=0.143 Sum_probs=31.5
Q ss_pred cHHHHHHHHHHHHHcCCcEEEecCCCCCCchhHhhhhhhcccCccccCCCCchhHHH
Q 040341 165 SVTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLA 221 (251)
Q Consensus 165 tlte~l~~~~~a~~~g~~~ivs~rsgEt~d~~iadLAva~~~~~ik~G~~~r~Er~a 221 (251)
++.|+..+++.|. .+||. |+-..|||.|++..-+-.=+|....++.
T Consensus 250 sL~el~ali~~a~-----l~Vs~------DSGp~HlAaA~g~p~v~Lfgpt~p~~~~ 295 (344)
T TIGR02201 250 TLPQLAALIDHAR-----LFIGV------DSVPMHMAAALGTPLVALFGPSKHIFWR 295 (344)
T ss_pred CHHHHHHHHHhCC-----EEEec------CCHHHHHHHHcCCCEEEEECCCCccccc
Confidence 6777777776544 67775 5678899999999877544454444443
No 296
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=35.91 E-value=53 Score=24.95 Aligned_cols=58 Identities=22% Similarity=0.314 Sum_probs=43.2
Q ss_pred CcceeEeeccccccHHHHHHHHHHHHHcCCcEEEecCCCCCCchhHhhhhhhcccCcc
Q 040341 152 TCNALLLKVNQIGSVTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLATGQI 209 (251)
Q Consensus 152 a~n~ilIK~nqiGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d~~iadLAva~~~~~i 209 (251)
..+.++|=.++-|.-.++++.++.|++.|.++++=....++.-...+|..+-+..+.-
T Consensus 52 ~~~d~vi~is~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~~ad~~l~~~~~~~ 109 (131)
T PF01380_consen 52 DPDDLVIIISYSGETRELIELLRFAKERGAPVILITSNSESPLARLADIVLYIPTGEE 109 (131)
T ss_dssp STTEEEEEEESSSTTHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHSSEEEEEESSCG
T ss_pred cccceeEeeeccccchhhhhhhHHHHhcCCeEEEEeCCCCCchhhhCCEEEEecCCCc
Confidence 3455566677889999999999999999999977666677766777766655544433
No 297
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=35.91 E-value=4e+02 Score=26.41 Aligned_cols=116 Identities=13% Similarity=0.188 Sum_probs=69.1
Q ss_pred HHHHHHhhhc-CCceeecCC--CCcccHHHHHHHHhhhCCceEEE-cccccccCHHHHHHHHhccCcceeEeec------
Q 040341 91 KNVYRSFISD-HPIVSIEDP--FDQDDWEHHAELTGKIGRHVQIV-GDDLLVTNPKRVEKAIKEKTCNALLLKV------ 160 (251)
Q Consensus 91 id~~~~l~~~-ypI~~IEDP--~~e~D~~~~~~l~~~lg~~~~iv-gDdl~vtn~~~i~~~i~~~a~n~ilIK~------ 160 (251)
.+....|++. ..++.|-=+ ....-|+..+++.+... .++|+ || |.+++..+.+++.| +++|.+-.
T Consensus 250 ~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p-~~~vi~g~---v~t~e~a~~a~~aG-aD~i~vg~g~G~~~ 324 (505)
T PLN02274 250 KERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTYP-ELDVIGGN---VVTMYQAQNLIQAG-VDGLRVGMGSGSIC 324 (505)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHhCC-CCcEEEec---CCCHHHHHHHHHcC-cCEEEECCCCCccc
Confidence 5777777664 456665333 22333466777777764 35664 55 57899999998865 44543321
Q ss_pred -ccc------ccHHHHHHHHHHHHHcCCcEEEecCCCCCCchhHhhhhhhcccCccccCCC
Q 040341 161 -NQI------GSVTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAP 214 (251)
Q Consensus 161 -nqi------Gtlte~l~~~~~a~~~g~~~ivs~rsgEt~d~~iadLAva~~~~~ik~G~~ 214 (251)
+|. ..+|....+.+++++.+.++|....-.... + +=-|+++|+..+..|..
T Consensus 325 ~t~~~~~~g~~~~~~i~~~~~~~~~~~vpVIadGGI~~~~-d--i~kAla~GA~~V~vGs~ 382 (505)
T PLN02274 325 TTQEVCAVGRGQATAVYKVASIAAQHGVPVIADGGISNSG-H--IVKALTLGASTVMMGSF 382 (505)
T ss_pred cCccccccCCCcccHHHHHHHHHHhcCCeEEEeCCCCCHH-H--HHHHHHcCCCEEEEchh
Confidence 221 134455566677778888888877533332 2 22345567777777765
No 298
>PRK13561 putative diguanylate cyclase; Provisional
Probab=35.81 E-value=4.5e+02 Score=26.13 Aligned_cols=123 Identities=15% Similarity=0.183 Sum_probs=63.6
Q ss_pred ChhhHHHHHHHhhhcCCc----eeec--CCCCcccHHHHHHHHhhhC-CceEEEcccccccCHHHHHHHHhccCcceeEe
Q 040341 86 SGDGLKNVYRSFISDHPI----VSIE--DPFDQDDWEHHAELTGKIG-RHVQIVGDDLLVTNPKRVEKAIKEKTCNALLL 158 (251)
Q Consensus 86 s~~elid~~~~l~~~ypI----~~IE--DP~~e~D~~~~~~l~~~lg-~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilI 158 (251)
...++++.+.+++++|++ +.|| ..-.-+|++....+.+++. ..+.|+.|| |-+....+......+.-..=.|
T Consensus 498 ~~~~f~~~l~~~l~~~~~~~~~l~lEi~E~~~~~~~~~~~~~~~~l~~~G~~i~ldd-fG~g~ssl~~L~~l~~l~~d~l 576 (651)
T PRK13561 498 MHPNMVADMLELLTRYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDD-FGMGYAGLRQLQHMKSLPIDVL 576 (651)
T ss_pred CCchHHHHHHHHHHHcCCChHHEEEEEchhhhhcCHHHHHHHHHHHHHCCCEEEEEC-CCCCcccHHHHhhcCCCCCcEE
Confidence 334667778888888863 3333 2222345555555554442 258899999 5654333332221111122234
Q ss_pred eccc--ccc----HHHHHHHHHHHHHcCCcEEEecCCCCCCc--hhHhhhhhhcccCcccc
Q 040341 159 KVNQ--IGS----VTESIEAVKMSKRAGWGVMASHRSGETED--TFIADLSVGLATGQIKT 211 (251)
Q Consensus 159 K~nq--iGt----lte~l~~~~~a~~~g~~~ivs~rsgEt~d--~~iadLAva~~~~~ik~ 211 (251)
|+.+ +.. -.=.-.++++|+..|+.++..+= ||+. .++..+-+-..-|+...
T Consensus 577 KiD~s~i~~i~~~~~~v~~i~~~a~~l~i~viAegV--E~~~~~~~l~~~g~d~~QG~~~~ 635 (651)
T PRK13561 577 KIDKMFVDGLPEDDSMVAAIIMLAQSLNLQVIAEGV--ETEAQRDWLLKAGVGIAQGFLFA 635 (651)
T ss_pred EECHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEecC--CCHHHHHHHHhcCCCEEeCCccc
Confidence 4432 111 11123357899999999999874 5543 34444444444455443
No 299
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=35.76 E-value=2.1e+02 Score=28.10 Aligned_cols=44 Identities=16% Similarity=0.268 Sum_probs=34.1
Q ss_pred ccccccHHHHHHHHHHHHHcCCc-----EEEecCCCCCCchhHhhhhhhc
Q 040341 160 VNQIGSVTESIEAVKMSKRAGWG-----VMASHRSGETEDTFIADLSVGL 204 (251)
Q Consensus 160 ~nqiGtlte~l~~~~~a~~~g~~-----~ivs~rsgEt~d~~iadLAva~ 204 (251)
+++..|+.+++++++.++++|+. +|+|- .|||.+++..+|-...
T Consensus 298 igR~ht~e~v~~ai~~ar~~Gf~~In~DLI~GL-PgEt~ed~~~tl~~l~ 346 (488)
T PRK08207 298 IGRHHTVEDIIEKFHLAREMGFDNINMDLIIGL-PGEGLEEVKHTLEEIE 346 (488)
T ss_pred hCCCCCHHHHHHHHHHHHhCCCCeEEEEEEeCC-CCCCHHHHHHHHHHHH
Confidence 46778999999999999999993 24554 5899888877665543
No 300
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=35.57 E-value=2.2e+02 Score=26.83 Aligned_cols=74 Identities=19% Similarity=0.256 Sum_probs=41.4
Q ss_pred HHHHhhhCCceEEEccccccc--CHHHHHHHHhccCcceeEeecccc---ccHHHHHHHHHHHHHcCCcEEEecCCCCCC
Q 040341 119 AELTGKIGRHVQIVGDDLLVT--NPKRVEKAIKEKTCNALLLKVNQI---GSVTESIEAVKMSKRAGWGVMASHRSGETE 193 (251)
Q Consensus 119 ~~l~~~lg~~~~ivgDdl~vt--n~~~i~~~i~~~a~n~ilIK~nqi---Gtlte~l~~~~~a~~~g~~~ivs~rsgEt~ 193 (251)
.++.+++|.++.||.|..+.. -.+++...++....+.... +.+ -+..+..+.++.+++.+..++|+-.-|-.-
T Consensus 15 ~~~~~~~g~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~f--~~v~~~~~~~~v~~~~~~~~~~~~D~IIaiGGGS~i 92 (386)
T cd08191 15 PRLAARLGSRALIVTDERMAGTPVFAELVQALAAAGVEVEVF--DGVLPDLPRSELCDAASAAARAGPDVIIGLGGGSCI 92 (386)
T ss_pred HHHHHHcCCeEEEEECcchhhcchHHHHHHHHHHcCCeEEEE--CCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchHH
Confidence 333444455666666653322 1334444444333333222 111 256677788888899999999988755554
Q ss_pred c
Q 040341 194 D 194 (251)
Q Consensus 194 d 194 (251)
|
T Consensus 93 D 93 (386)
T cd08191 93 D 93 (386)
T ss_pred H
Confidence 4
No 301
>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=35.45 E-value=44 Score=34.21 Aligned_cols=54 Identities=15% Similarity=0.204 Sum_probs=41.0
Q ss_pred cceeEeeccccccHHHHHHHHHHHHHcCCcEEEecCCCCCCchhHhhhhhhccc
Q 040341 153 CNALLLKVNQIGSVTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLAT 206 (251)
Q Consensus 153 ~n~ilIK~nqiGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d~~iadLAva~~~ 206 (251)
.+.++|=++|-|.-.+++++++.|+++|..++.=....++.-...||..+-+.+
T Consensus 401 ~~dlvI~ISqSGeT~dtl~Al~~Ak~~Ga~tIaITn~~~S~La~~AD~~l~~~a 454 (670)
T PTZ00394 401 RDDVCFFVSQSGETADTLMALQLCKEAGAMCVGITNVVGSSISRLTHYAIHLNA 454 (670)
T ss_pred CCCEEEEEECCcCcHHHHHHHHHHHHCCCcEEEEECCCCCHHHHhcCeEEEecc
Confidence 456778889999999999999999999987765555556655566666555544
No 302
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=35.35 E-value=2.7e+02 Score=23.46 Aligned_cols=26 Identities=12% Similarity=0.235 Sum_probs=19.1
Q ss_pred ccChhhHHHHHHHhhhcCCceeecCC
Q 040341 84 KVSGDGLKNVYRSFISDHPIVSIEDP 109 (251)
Q Consensus 84 ~~s~~elid~~~~l~~~ypI~~IEDP 109 (251)
....+++.+.+.++-++|.++.||=|
T Consensus 87 ~~~~~~i~~~~~~l~~~~D~viIEg~ 112 (222)
T PRK00090 87 AIDLEKISAALRRLAQQYDLVLVEGA 112 (222)
T ss_pred CCCHHHHHHHHHHHHhhCCEEEEECC
Confidence 44567777888776678898888844
No 303
>COG4018 Uncharacterized protein conserved in archaea [Function unknown]
Probab=35.28 E-value=94 Score=29.57 Aligned_cols=95 Identities=22% Similarity=0.389 Sum_probs=55.7
Q ss_pred ccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeeccccccHHHHHHHHHHHHHcCCcEEEecCCCCC
Q 040341 113 DDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAGWGVMASHRSGET 192 (251)
Q Consensus 113 ~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqiGtlte~l~~~~~a~~~g~~~ivs~rsgEt 192 (251)
+|++.|.+|...+ -+.+++.. +.+. ..-.+.|+-++++.|+++|-++=-=-..|+-
T Consensus 176 ~d~EeW~eLassi--cvNvt~eq-----------GaE~-----------HAAPLeEmk~VaEtArk~GkGveaI~hvgDG 231 (505)
T COG4018 176 EDLEEWAELASSI--CVNVTGEQ-----------GAEA-----------HAAPLEEMKRVAETARKSGKGVEAILHVGDG 231 (505)
T ss_pred hhHHHHHHHHhhh--eEecccCc-----------cccc-----------ccCCHHHHHHHHHHHHHhCCCceeEEEecCC
Confidence 6788888887776 34333322 1121 2347889999999999999888222223666
Q ss_pred CchhHhhhhhhccc---CccccCCCCc--hhHHHHhhHHHHHHH
Q 040341 193 EDTFIADLSVGLAT---GQIKTGAPCR--SERLAKYNQLLRIEE 231 (251)
Q Consensus 193 ~d~~iadLAva~~~---~~ik~G~~~r--~Er~aKyN~llrie~ 231 (251)
.|++|.-|-.++-- -|+--|+|.. ..|+..+-+-+-...
T Consensus 232 yDdli~G~kA~ve~~vDvfvvEGgPFNrA~dRL~AFa~Avaa~R 275 (505)
T COG4018 232 YDDLIDGLKAAVEEVVDVFVVEGGPFNRAEDRLSAFARAVAACR 275 (505)
T ss_pred cHHHHHHHHHHHHhcCcEEEEcCCCcchhhHHHHHHHHHHHhhe
Confidence 77887766554422 2444566532 345555544444333
No 304
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=35.18 E-value=72 Score=27.39 Aligned_cols=45 Identities=9% Similarity=0.177 Sum_probs=29.0
Q ss_pred CcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEe
Q 040341 111 DQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLL 158 (251)
Q Consensus 111 ~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilI 158 (251)
..-||+...++.+.+. +||+.-- =++|++++++..+.+.++++++
T Consensus 175 ~G~d~~~i~~l~~~~~--ipvia~G-Gi~~~~di~~~~~~g~~~gv~v 219 (233)
T PRK00748 175 SGPNVEATRELAAAVP--IPVIASG-GVSSLDDIKALKGLGAVEGVIV 219 (233)
T ss_pred CCCCHHHHHHHHHhCC--CCEEEeC-CCCCHHHHHHHHHcCCccEEEE
Confidence 3357777777777763 4444322 2577888888777766776665
No 305
>PRK10551 phage resistance protein; Provisional
Probab=35.17 E-value=4e+02 Score=26.25 Aligned_cols=115 Identities=19% Similarity=0.211 Sum_probs=61.8
Q ss_pred hhHHHHHHHhhhcCCc----eeec---CCCCcccHHHHHHHH--hhhCCceEEEcccccccCHHHHHHHHhccCcceeEe
Q 040341 88 DGLKNVYRSFISDHPI----VSIE---DPFDQDDWEHHAELT--GKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLL 158 (251)
Q Consensus 88 ~elid~~~~l~~~ypI----~~IE---DP~~e~D~~~~~~l~--~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilI 158 (251)
.++++.+.++++++|+ +.|| .-+-. +...-..+. ++. .+.|..|| |-|....+...-.. ..=.|
T Consensus 364 ~~f~~~l~~~l~~~~~~~~~LvlEItE~~~~~-~~~~~~~l~~Lr~~--G~~ialDD-FGtg~ssl~~L~~l---~vD~l 436 (518)
T PRK10551 364 DSFKADVQRLLASLPADHFQIVLEITERDMVQ-EEEATKLFAWLHSQ--GIEIAIDD-FGTGHSALIYLERF---TLDYL 436 (518)
T ss_pred chHHHHHHHHHHhCCCCcceEEEEEechHhcC-CHHHHHHHHHHHHC--CCEEEEEC-CCCCchhHHHHHhC---CCCEE
Confidence 3556666677777663 2333 22222 222222222 333 58899999 66655554443222 22345
Q ss_pred eccc-----cccHH----HHHHHHHHHHHcCCcEEEecCCCCCCc--hhHhhhhhhcccCcccc
Q 040341 159 KVNQ-----IGSVT----ESIEAVKMSKRAGWGVMASHRSGETED--TFIADLSVGLATGQIKT 211 (251)
Q Consensus 159 K~nq-----iGtlt----e~l~~~~~a~~~g~~~ivs~rsgEt~d--~~iadLAva~~~~~ik~ 211 (251)
|+.+ +++=. -.-.++++|++.|+.++... .||+. .++.++-|-..-|+...
T Consensus 437 KID~~fv~~i~~~~~~~~il~~ii~la~~lgi~vVAEG--VEt~~q~~~L~~~Gv~~~QGy~f~ 498 (518)
T PRK10551 437 KIDRGFIQAIGTETVTSPVLDAVLTLAKRLNMLTVAEG--VETPEQARWLRERGVNFLQGYWIS 498 (518)
T ss_pred EECHHHHhhhccChHHHHHHHHHHHHHHHCCCEEEEEe--CCcHHHHHHHHHcCCCEEEcCccC
Confidence 6554 22211 12346789999999999988 45544 55555555555565543
No 306
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=35.13 E-value=52 Score=27.25 Aligned_cols=42 Identities=17% Similarity=0.192 Sum_probs=31.0
Q ss_pred HHHHhccCcceeEeeccccccHHHHHHHHHHHHHcCCcEEEecCCC
Q 040341 145 EKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAGWGVMASHRSG 190 (251)
Q Consensus 145 ~~~i~~~a~n~ilIK~nqiGtlte~l~~~~~a~~~g~~~ivs~rsg 190 (251)
++.+-...++++++=|+.+||+.|+.++.. ++.++++=-..|
T Consensus 84 Rk~~m~~~sda~IvlpGG~GTL~E~~~a~~----~~kpv~~l~~~g 125 (159)
T TIGR00725 84 RNFILVRSADVVVSVGGGYGTAIEILGAYA----LGGPVVVLRGTG 125 (159)
T ss_pred HHHHHHHHCCEEEEcCCchhHHHHHHHHHH----cCCCEEEEECCC
Confidence 344445578899999999999999999877 577765544333
No 307
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=35.08 E-value=56 Score=25.39 Aligned_cols=71 Identities=14% Similarity=0.192 Sum_probs=47.4
Q ss_pred HHHHHHHHHHcCCcEEEecCCCCCCchhHhhhhhhcccCccccCCCCchhHHHHhhHHHHHHHHhCCCccccCccc
Q 040341 169 SIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGPAAIYAGTKF 244 (251)
Q Consensus 169 ~l~~~~~a~~~g~~~ivs~rsgEt~d~~iadLAva~~~~~ik~G~~~r~Er~aKyN~llrie~~l~~~~~~~~~~~ 244 (251)
+.++++-|++.|+.+++=..-.|+ .-.|...+-..-++- ++ ...+...-..++++|.++-+-.++++|--|
T Consensus 14 a~r~~ra~r~~Gi~tv~v~s~~d~---~s~~~~~ad~~~~~~-~~-~~~~~yl~~e~I~~ia~~~g~~~i~pGyg~ 84 (110)
T PF00289_consen 14 AVRIIRALRELGIETVAVNSNPDT---VSTHVDMADEAYFEP-PG-PSPESYLNIEAIIDIARKEGADAIHPGYGF 84 (110)
T ss_dssp HHHHHHHHHHTTSEEEEEEEGGGT---TGHHHHHSSEEEEEE-SS-SGGGTTTSHHHHHHHHHHTTESEEESTSST
T ss_pred HHHHHHHHHHhCCcceeccCchhc---ccccccccccceecC-cc-hhhhhhccHHHHhhHhhhhcCcccccccch
Confidence 899999999999999877754443 333444444443333 22 244555566788888888787778877555
No 308
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=34.98 E-value=1.9e+02 Score=27.71 Aligned_cols=109 Identities=17% Similarity=0.239 Sum_probs=63.5
Q ss_pred ccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeecc---c----cccHHHHHHHHHHHHHcCCcEEE
Q 040341 113 DDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVN---Q----IGSVTESIEAVKMSKRAGWGVMA 185 (251)
Q Consensus 113 ~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~n---q----iGtlte~l~~~~~a~~~g~~~iv 185 (251)
-+|+..++|.+.. +.+|+.-. |.++++++++++.| +++|.|--+ | +.|+.-..++.+.. ...+++++
T Consensus 240 ~tW~~i~~lr~~~--~~pvivKg--V~~~~dA~~a~~~G-~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~~-~~~~~vi~ 313 (383)
T cd03332 240 LTWEDLAFLREWT--DLPIVLKG--ILHPDDARRAVEAG-VDGVVVSNHGGRQVDGSIAALDALPEIVEAV-GDRLTVLF 313 (383)
T ss_pred CCHHHHHHHHHhc--CCCEEEec--CCCHHHHHHHHHCC-CCEEEEcCCCCcCCCCCcCHHHHHHHHHHHh-cCCCeEEE
Confidence 4788888899888 56777665 58899999999875 666666522 1 12333222222222 23488888
Q ss_pred ecCCCCCCchhHhhhhhhcccCccccCCC-------CchhHHHHhhHHHHHH
Q 040341 186 SHRSGETEDTFIADLSVGLATGQIKTGAP-------CRSERLAKYNQLLRIE 230 (251)
Q Consensus 186 s~rsgEt~d~~iadLAva~~~~~ik~G~~-------~r~Er~aKyN~llrie 230 (251)
+..- .+.-+.+. |+++|+..+-.|.| .+.+.+.++=++|+-|
T Consensus 314 dGGI-r~G~Dv~K--ALaLGA~~v~iGr~~l~~l~~~G~~gv~~~l~~l~~E 362 (383)
T cd03332 314 DSGV-RTGADIMK--ALALGAKAVLIGRPYAYGLALGGEDGVEHVLRNLLAE 362 (383)
T ss_pred eCCc-CcHHHHHH--HHHcCCCEEEEcHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 8753 33333333 44445555555433 3456666666666544
No 309
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=34.75 E-value=2e+02 Score=25.39 Aligned_cols=51 Identities=22% Similarity=0.077 Sum_probs=41.2
Q ss_pred ceeEeeccccccHHHHHHHHHHHHHcCCcEEEecCCCCCCchhHhhhhhhc
Q 040341 154 NALLLKVNQIGSVTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGL 204 (251)
Q Consensus 154 n~ilIK~nqiGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d~~iadLAva~ 204 (251)
+-++|=.+.-|--.+++++++.|+++|.++++=.....+.-...||..+-.
T Consensus 176 ~Dv~I~iS~sg~~~~~~~~~~~ak~~ga~iI~IT~~~~s~la~~ad~~l~~ 226 (278)
T PRK11557 176 DDLLLAISYSGERRELNLAADEALRVGAKVLAITGFTPNALQQRASHCLYT 226 (278)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHcCCCEEEEcCCCCCchHHhCCEEEEe
Confidence 345666788899999999999999999999887777777777788877643
No 310
>PRK05967 cystathionine beta-lyase; Provisional
Probab=34.69 E-value=2.3e+02 Score=27.03 Aligned_cols=110 Identities=15% Similarity=0.118 Sum_probs=68.6
Q ss_pred HhhhcCCceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEee-c-cccccHHHHHHHH
Q 040341 96 SFISDHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK-V-NQIGSVTESIEAV 173 (251)
Q Consensus 96 ~l~~~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK-~-nqiGtlte~l~~~ 173 (251)
.+++.=.-+.+-+|....-..-+..+.+++|-++..+ | .+..+.+++++..+ ...|.+- | |-.+++.+.-+++
T Consensus 98 all~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi~v~~v-d---~~~~e~l~~al~~~-TklV~lesPsNP~l~v~dl~~I~ 172 (395)
T PRK05967 98 GFLSPGDHALIVDSVYYPTRHFCDTMLKRLGVEVEYY-D---PEIGAGIAKLMRPN-TKVVHTEAPGSNTFEMQDIPAIA 172 (395)
T ss_pred HhcCCCCEEEEccCCcHHHHHHHHHHHHhcCeEEEEe-C---CCCHHHHHHhcCcC-ceEEEEECCCCCCCcHHHHHHHH
Confidence 4444333344446665433333335557777666666 2 13456788887654 5566666 3 6689999999999
Q ss_pred HHHHHcCCcEEEecCCCCC----CchhHhhhhhhcccCccc
Q 040341 174 KMSKRAGWGVMASHRSGET----EDTFIADLSVGLATGQIK 210 (251)
Q Consensus 174 ~~a~~~g~~~ivs~rsgEt----~d~~iadLAva~~~~~ik 210 (251)
++|+++|..++|-.-.... ...+=+|+.|-+...++-
T Consensus 173 ~la~~~g~~vvVD~t~a~p~~~~pl~~GaDivv~S~tKy~~ 213 (395)
T PRK05967 173 EAAHRHGAIVMMDNTWATPLYFRPLDFGVDISIHAATKYPS 213 (395)
T ss_pred HHHHHhCCEEEEECCccCceecChhHcCCCEEEEecccccC
Confidence 9999999988876543211 112237888877777644
No 311
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=34.66 E-value=4.6e+02 Score=25.80 Aligned_cols=129 Identities=14% Similarity=0.206 Sum_probs=79.3
Q ss_pred CccChhhHHHHHHHhhhcCCceeecCC-----------CCcccHHHHHHHHhhhCCceEEE----cccc--cccCHHH--
Q 040341 83 QKVSGDGLKNVYRSFISDHPIVSIEDP-----------FDQDDWEHHAELTGKIGRHVQIV----GDDL--LVTNPKR-- 143 (251)
Q Consensus 83 ~~~s~~elid~~~~l~~~ypI~~IEDP-----------~~e~D~~~~~~l~~~lg~~~~iv----gDdl--~vtn~~~-- 143 (251)
..++.+|++..... +++.++-+||=- +.+++|+..+.+.+.+. ++.+. |-.+ +...+++
T Consensus 20 ~~~~t~dkl~Ia~~-Ld~~Gv~~IE~~ggatfd~~~~Fl~e~p~e~l~~l~~~~~-~~~l~~l~r~~N~~G~~~~~dDvv 97 (467)
T PRK14041 20 TRMRTEDMLPALEA-FDRMGFYSMEVWGGATFDVCVRFLNENPWERLKEIRKRLK-NTKIQMLLRGQNLVGYRHYADDVV 97 (467)
T ss_pred ccCCHHHHHHHHHH-HHHcCCCEEEecCCccchhhhcccCCCHHHHHHHHHHhCC-CCEEEEEeccccccCcccccchhh
Confidence 46889999997777 588899999973 57899999999987753 23332 1110 0012444
Q ss_pred ---HHHHHhccCcce-eEeeccccccHHHHHHHHHHHHHcCCcEE--Eec-CCCCCCchhHhhhh---hhcccCccccCC
Q 040341 144 ---VEKAIKEKTCNA-LLLKVNQIGSVTESIEAVKMSKRAGWGVM--ASH-RSGETEDTFIADLS---VGLATGQIKTGA 213 (251)
Q Consensus 144 ---i~~~i~~~a~n~-ilIK~nqiGtlte~l~~~~~a~~~g~~~i--vs~-rsgEt~d~~iadLA---va~~~~~ik~G~ 213 (251)
++.+++.+.--. +.+-+|. +.....+++.|++.|..+. ++. .+.+....+++++| +..++..|-..+
T Consensus 98 ~~fv~~A~~~Gvd~irif~~lnd---~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~e~~~~~a~~l~~~Gad~I~i~D 174 (467)
T PRK14041 98 ELFVKKVAEYGLDIIRIFDALND---IRNLEKSIEVAKKHGAHVQGAISYTVSPVHTLEYYLEFARELVDMGVDSICIKD 174 (467)
T ss_pred HHHHHHHHHCCcCEEEEEEeCCH---HHHHHHHHHHHHHCCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEECC
Confidence 566665543221 2233455 5667778899999998775 332 22344556666654 556677765544
Q ss_pred CCc
Q 040341 214 PCR 216 (251)
Q Consensus 214 ~~r 216 (251)
..+
T Consensus 175 t~G 177 (467)
T PRK14041 175 MAG 177 (467)
T ss_pred ccC
Confidence 443
No 312
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=34.52 E-value=2.1e+02 Score=26.60 Aligned_cols=68 Identities=22% Similarity=0.253 Sum_probs=38.1
Q ss_pred CceEEEcccccccC--HHHHHHHHhccCcceeEe-eccccccHHHHHHHHHHHHHcCCcEEEecCCCCCCc
Q 040341 127 RHVQIVGDDLLVTN--PKRVEKAIKEKTCNALLL-KVNQIGSVTESIEAVKMSKRAGWGVMASHRSGETED 194 (251)
Q Consensus 127 ~~~~ivgDdl~vtn--~~~i~~~i~~~a~n~ilI-K~nqiGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d 194 (251)
+++.||.|..+..+ .+++...++....+...+ .+..--++....++++.+++++..++|+-.-|-.-|
T Consensus 24 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IiaiGGGs~~D 94 (370)
T cd08551 24 RKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYREEGCDGVIAVGGGSVLD 94 (370)
T ss_pred CeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCchHHH
Confidence 35555655422221 234444444332333322 233334777888888888888999998887555533
No 313
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=34.44 E-value=2.1e+02 Score=26.81 Aligned_cols=79 Identities=19% Similarity=0.209 Sum_probs=45.4
Q ss_pred HHHHHHHhhhC-CceEEEcccccccC--HHHHHHHHhccCcceeEe-eccccccHHHHHHHHHHHHHcCCcEEEecCCCC
Q 040341 116 EHHAELTGKIG-RHVQIVGDDLLVTN--PKRVEKAIKEKTCNALLL-KVNQIGSVTESIEAVKMSKRAGWGVMASHRSGE 191 (251)
Q Consensus 116 ~~~~~l~~~lg-~~~~ivgDdl~vtn--~~~i~~~i~~~a~n~ilI-K~nqiGtlte~l~~~~~a~~~g~~~ivs~rsgE 191 (251)
....+..+++| .++.||.|.....+ .+++...++......... ..-.--++....++++.+++++..++|+-.-|-
T Consensus 18 ~~l~~~l~~~g~~r~lvvt~~~~~~~g~~~~v~~~L~~~~i~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiaiGGGS 97 (379)
T TIGR02638 18 EDIVDEVKRRGFKKALVVTDKDLIKFGVADKVTDLLDEAGIAYELFDEVKPNPTITVVKAGVAAFKASGADYLIAIGGGS 97 (379)
T ss_pred HHHHHHHHhcCCCEEEEEcCcchhhccchHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCChH
Confidence 33333344445 56777777632222 355665555433333332 112224788888889999999999999887555
Q ss_pred CCc
Q 040341 192 TED 194 (251)
Q Consensus 192 t~d 194 (251)
.-|
T Consensus 98 viD 100 (379)
T TIGR02638 98 PID 100 (379)
T ss_pred HHH
Confidence 533
No 314
>PRK07671 cystathionine beta-lyase; Provisional
Probab=34.41 E-value=3.1e+02 Score=25.61 Aligned_cols=112 Identities=18% Similarity=0.204 Sum_probs=70.5
Q ss_pred HHHhhhcCCceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEee-c-cccccHHHHHH
Q 040341 94 YRSFISDHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK-V-NQIGSVTESIE 171 (251)
Q Consensus 94 ~~~l~~~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK-~-nqiGtlte~l~ 171 (251)
...++..=.=+.+.+|....-+..|..+.++.|-++..+ | ..+++.+++++..+ ...|.|- | |-.|.+.+.-+
T Consensus 81 ~~~~l~~Gd~Viv~~~~y~~~~~~~~~~~~~~G~~v~~v-~---~~d~~~l~~ai~~~-tklV~le~P~NPtg~~~dl~~ 155 (377)
T PRK07671 81 VMMLFSSGDHVILTDDVYGGTYRVMTKVLNRFGIEHTFV-D---TSNLEEVEEAIRPN-TKAIYVETPTNPLLKITDIKK 155 (377)
T ss_pred HHHHhCCCCEEEECCCccchHHHHHHHHHhcCCeEEEEE-C---CCCHHHHHHhcCCC-CeEEEEECCCCCCCcccCHHH
Confidence 334444323355677765545566666666676555444 2 24789999888654 3444442 5 55688888888
Q ss_pred HHHHHHHcCCcEEEecCCCCC----CchhHhhhhhhcccCccc
Q 040341 172 AVKMSKRAGWGVMASHRSGET----EDTFIADLSVGLATGQIK 210 (251)
Q Consensus 172 ~~~~a~~~g~~~ivs~rsgEt----~d~~iadLAva~~~~~ik 210 (251)
+.++|+++|+.++|-.-.+.. ..+.-+|+.+.+.+.++-
T Consensus 156 I~~la~~~g~~lvvD~a~~~~~~~~p~~~g~Divv~S~sK~l~ 198 (377)
T PRK07671 156 ISTIAKEKGLLTIVDNTFMTPYWQSPISLGADIVLHSATKYLG 198 (377)
T ss_pred HHHHHHHcCCEEEEECCCCccccCChhhhCCeEEEecCccccc
Confidence 899999999988887643321 123345788877777664
No 315
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=34.38 E-value=1.5e+02 Score=25.77 Aligned_cols=69 Identities=19% Similarity=0.210 Sum_probs=47.3
Q ss_pred cCCceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeeccccccHHHHHHHH
Q 040341 100 DHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAV 173 (251)
Q Consensus 100 ~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqiGtlte~l~~~ 173 (251)
+.-|+.||+|... -.++.-..+...+..+ |+.=+ ..+|..++++++.| +.+.++||=+...+-..++++
T Consensus 52 DvVildie~p~rd-~~e~~~~~~~~~~~pi-v~lt~--~s~p~~i~~a~~~G-v~ayivkpi~~~rl~p~L~vA 120 (194)
T COG3707 52 DVVILDIEMPRRD-IIEALLLASENVARPI-VALTA--YSDPALIEAAIEAG-VMAYIVKPLDESRLLPILDVA 120 (194)
T ss_pred CEEEEecCCCCcc-HHHHHHHhhcCCCCCE-EEEEc--cCChHHHHHHHHcC-CeEEEecCcchhhhhHHHHHH
Confidence 4447789999886 3455555566564433 33333 25899999999885 678899987777776666554
No 316
>smart00642 Aamy Alpha-amylase domain.
Probab=34.30 E-value=47 Score=27.64 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=22.5
Q ss_pred ccccHHHHHHHHHHHHHcCCcEEEe
Q 040341 162 QIGSVTESIEAVKMSKRAGWGVMAS 186 (251)
Q Consensus 162 qiGtlte~l~~~~~a~~~g~~~ivs 186 (251)
+.||..+..+.++.|+++|+.+|+-
T Consensus 65 ~~Gt~~d~~~lv~~~h~~Gi~vilD 89 (166)
T smart00642 65 RFGTMEDFKELVDAAHARGIKVILD 89 (166)
T ss_pred ccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 6799999999999999999999653
No 317
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=34.27 E-value=1.7e+02 Score=27.07 Aligned_cols=80 Identities=19% Similarity=0.170 Sum_probs=51.2
Q ss_pred ceeecCCCCcccHHHHHHHHhhhCCceEEE-cc-cccccCHHHHHHHHhc---cCcceeEeeccccccHHHHHHHHHHHH
Q 040341 103 IVSIEDPFDQDDWEHHAELTGKIGRHVQIV-GD-DLLVTNPKRVEKAIKE---KTCNALLLKVNQIGSVTESIEAVKMSK 177 (251)
Q Consensus 103 I~~IEDP~~e~D~~~~~~l~~~lg~~~~iv-gD-dl~vtn~~~i~~~i~~---~a~n~ilIK~nqiGtlte~l~~~~~a~ 177 (251)
-|.+-.|- +..+.......|-++..+ .| +.+..+++.+++.+.. ....++++ .|-.|.+.+.-+++++|+
T Consensus 71 ~Viv~~~~----~~~~~~~~~~~G~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~t~~v~~-~~~~G~~~~~~~i~~l~~ 145 (380)
T TIGR03588 71 RVWTTPIT----FVATANCALYCGAKVDFVDIDPDTGNIDEDALEKKLAAAKGKLPKAIVP-VDFAGKSVDMQAIAALAK 145 (380)
T ss_pred EEEeCCcc----hHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHHhhcccCCCceEEEE-eCCCCccCCHHHHHHHHH
Confidence 34455553 455555555666554433 21 2245689999998873 33455543 566788888888899999
Q ss_pred HcCCcEEEec
Q 040341 178 RAGWGVMASH 187 (251)
Q Consensus 178 ~~g~~~ivs~ 187 (251)
++|+.+++-.
T Consensus 146 ~~~~~lI~D~ 155 (380)
T TIGR03588 146 KHGLKIIEDA 155 (380)
T ss_pred HcCCEEEEEC
Confidence 9999887655
No 318
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=34.21 E-value=2.2e+02 Score=26.61 Aligned_cols=107 Identities=12% Similarity=0.017 Sum_probs=65.2
Q ss_pred ceeecCCCCcccHHHHHHHHhhhCCce-----EEEcccccccCHHHHHHHHhcc--CcceeEeec--cccccHHHHHHHH
Q 040341 103 IVSIEDPFDQDDWEHHAELTGKIGRHV-----QIVGDDLLVTNPKRVEKAIKEK--TCNALLLKV--NQIGSVTESIEAV 173 (251)
Q Consensus 103 I~~IEDP~~e~D~~~~~~l~~~lg~~~-----~ivgDdl~vtn~~~i~~~i~~~--a~n~ilIK~--nqiGtlte~l~~~ 173 (251)
.+.+.+.=....+..|....++.|-.+ .+--++-..-+++.++..++.. ....+.+-. |..|.+...-++.
T Consensus 115 ~i~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~t~lv~~~~v~~~tG~~~~~~~i~ 194 (406)
T TIGR01814 115 KILLEAKAFPSDHYAIESQLQLHGLTVEESMVQIEPREEETLRLEDILDTIEKNGDDIAVILLSGVQYYTGQLFDMAAIT 194 (406)
T ss_pred EEEecCCCCChHHHHHHHHHHhcCCCcccceEEeccCCCCccCHHHHHHHHHhcCCCeEEEEEeccccccceecCHHHHH
Confidence 555666666677888876666665443 2322321334778888877532 233444432 4578889999999
Q ss_pred HHHHHcCCcEEEec------CCCCCCchhHhhhhhhcccCccc
Q 040341 174 KMSKRAGWGVMASH------RSGETEDTFIADLSVGLATGQIK 210 (251)
Q Consensus 174 ~~a~~~g~~~ivs~------rsgEt~d~~iadLAva~~~~~ik 210 (251)
++|+++|..++|-. ..-+.. ..=+|+.++.+-.++.
T Consensus 195 ~~~~~~g~~~~vD~aq~~G~~~id~~-~~gvD~~~~s~hK~l~ 236 (406)
T TIGR01814 195 RAAHAKGALVGFDLAHAVGNVPLDLH-DWGVDFACWCTYKYLN 236 (406)
T ss_pred HHHHHcCCEEEEEcccccCCcccccc-cCCCCEEEEcCccccC
Confidence 99999999988743 221111 1125777777665543
No 319
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=34.12 E-value=1.7e+02 Score=27.05 Aligned_cols=30 Identities=23% Similarity=0.226 Sum_probs=16.7
Q ss_pred cHHHHHHHHHHHHHcCCcEEEecCCCCCCc
Q 040341 165 SVTESIEAVKMSKRAGWGVMASHRSGETED 194 (251)
Q Consensus 165 tlte~l~~~~~a~~~g~~~ivs~rsgEt~d 194 (251)
++....++++.+++.+..++|+-.-|-.-|
T Consensus 62 ~~~~v~~~~~~~~~~~~d~IIavGGGs~~D 91 (349)
T cd08550 62 STEEVVKALCGAEEQEADVIIGVGGGKTLD 91 (349)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEecCcHHHH
Confidence 445555566666666666666655444433
No 320
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=34.07 E-value=1.7e+02 Score=27.28 Aligned_cols=31 Identities=26% Similarity=0.245 Sum_probs=19.0
Q ss_pred ccHHHHHHHHHHHHHcCCcEEEecCCCCCCc
Q 040341 164 GSVTESIEAVKMSKRAGWGVMASHRSGETED 194 (251)
Q Consensus 164 Gtlte~l~~~~~a~~~g~~~ivs~rsgEt~d 194 (251)
.+.+...++++.+++.+..++|+-.-|-..|
T Consensus 68 p~~~~v~~~~~~~~~~~~d~IIavGGGsv~D 98 (366)
T PRK09423 68 CSDNEIDRLVAIAEENGCDVVIGIGGGKTLD 98 (366)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEecChHHHH
Confidence 3555556666667777777777666444433
No 321
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=33.98 E-value=64 Score=26.55 Aligned_cols=53 Identities=23% Similarity=0.272 Sum_probs=42.4
Q ss_pred ceeEeeccccccHHHHHHHHHHHHHcCCcEEEecCCCCCCchhHhhhhhhccc
Q 040341 154 NALLLKVNQIGSVTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLAT 206 (251)
Q Consensus 154 n~ilIK~nqiGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d~~iadLAva~~~ 206 (251)
+-++|=.++-|.-.+++++++.|+++|.+++.=....++.-...+|..+-+..
T Consensus 73 ~Dv~I~iS~sG~t~~~i~~~~~ak~~g~~ii~IT~~~~s~la~~ad~~l~~~~ 125 (179)
T TIGR03127 73 GDLLIAISGSGETESLVTVAKKAKEIGATVAAITTNPESTLGKLADVVVEIPA 125 (179)
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEeCC
Confidence 34556678889999999999999999999987777778877778887665543
No 322
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=33.90 E-value=2.1e+02 Score=26.73 Aligned_cols=68 Identities=21% Similarity=0.308 Sum_probs=42.0
Q ss_pred CceEEEcccccccC--HHHHHHHHhccCcceeEe-eccccccHHHHHHHHHHHHHcCCcEEEecCCCCCCc
Q 040341 127 RHVQIVGDDLLVTN--PKRVEKAIKEKTCNALLL-KVNQIGSVTESIEAVKMSKRAGWGVMASHRSGETED 194 (251)
Q Consensus 127 ~~~~ivgDdl~vtn--~~~i~~~i~~~a~n~ilI-K~nqiGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d 194 (251)
.++.||.|..+..+ .+++...++....+.... ....--++....++++.+++.+..++|+-.-|-.-|
T Consensus 24 ~r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~~D 94 (375)
T cd08194 24 KRPLIVTDKVMVKLGLVDKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAKEGGCDVIIALGGGSPID 94 (375)
T ss_pred CeEEEEcCcchhhcchHHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchHHH
Confidence 46777776633322 355555554433333222 233335788888899999999999999887665544
No 323
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=33.81 E-value=3.1e+02 Score=23.67 Aligned_cols=37 Identities=0% Similarity=0.046 Sum_probs=20.8
Q ss_pred cccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhcc
Q 040341 112 QDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEK 151 (251)
Q Consensus 112 e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~ 151 (251)
..|++...++.+.++ +||+++= -+++++++++.+..+
T Consensus 57 ~~~~~~i~~i~~~~~--~pv~~~G-GI~s~~d~~~~l~~G 93 (243)
T cd04731 57 ETMLDVVERVAEEVF--IPLTVGG-GIRSLEDARRLLRAG 93 (243)
T ss_pred cccHHHHHHHHHhCC--CCEEEeC-CCCCHHHHHHHHHcC
Confidence 446666667766663 3344333 256666666666544
No 324
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=33.77 E-value=1.2e+02 Score=28.16 Aligned_cols=88 Identities=20% Similarity=0.174 Sum_probs=54.5
Q ss_pred HHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeE-ee--ccccccHHHHHHHHHHHHHcCCcEEEecCCCCCCc
Q 040341 118 HAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALL-LK--VNQIGSVTESIEAVKMSKRAGWGVMASHRSGETED 194 (251)
Q Consensus 118 ~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~il-IK--~nqiGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d 194 (251)
|.......|.+...++-+ ...+++.+++++..+. .+++ +- +|-.|++...-+++++|+++|+.+++-.-.+..-.
T Consensus 116 ~~~~~~~~g~~~v~v~~~-~~~d~~~le~ai~~~t-~ai~~v~~~~~~~g~~~~~~~i~~~a~~~gi~vivD~a~~~~~~ 193 (363)
T TIGR01437 116 VETMVRLGGGKVVEAGYA-NECSAEQLEAAITEKT-AAILYIKSHHCVQKSMLSVEDAAQVAQEHNLPLIVDAAAEEDLQ 193 (363)
T ss_pred hHHHHHhcCCeEEEEcCC-CCCCHHHHHHhcChhc-eEEEEEecCCCCcCCcCCHHHHHHHHHHcCCeEEEECCCCCchH
Confidence 445555555455455544 4578999999997654 3444 22 34467777777889999999999988765431111
Q ss_pred ---hhHhhhhhhcccC
Q 040341 195 ---TFIADLSVGLATG 207 (251)
Q Consensus 195 ---~~iadLAva~~~~ 207 (251)
.+=+|+.+.++..
T Consensus 194 ~~~~~g~D~~~~S~~K 209 (363)
T TIGR01437 194 KYYRLGADLVIYSGAK 209 (363)
T ss_pred HHHHcCCCEEEEeCCc
Confidence 1114666655444
No 325
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=33.64 E-value=2.4e+02 Score=27.21 Aligned_cols=96 Identities=13% Similarity=0.168 Sum_probs=67.7
Q ss_pred hhhHHHHHHHhhhcCC-ceeecCCCCcccHHHHHHHHhhhCCc-eEEEcccccccCHHHHHHHHhccCcceeEeeccc--
Q 040341 87 GDGLKNVYRSFISDHP-IVSIEDPFDQDDWEHHAELTGKIGRH-VQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQ-- 162 (251)
Q Consensus 87 ~~elid~~~~l~~~yp-I~~IEDP~~e~D~~~~~~l~~~lg~~-~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nq-- 162 (251)
..+.+++..+++-+-+ .|.+|+|=...=...+ +..|-+ ++|--|+ .--+++.+++.......+.+-+-|+-
T Consensus 164 ~q~al~l~~~~l~~pGd~v~vE~PtY~~~~~~~----~~~g~~~~~vp~d~-~G~~~e~le~~~~~~~~k~~y~~P~~qN 238 (459)
T COG1167 164 AQQALDLLLRLLLDPGDTVLVEDPTYPGALQAL----EALGARVIPVPVDE-DGIDPEALEEALAQWKPKAVYVTPTFQN 238 (459)
T ss_pred HHHHHHHHHHHhCCCCCEEEEcCCCcHHHHHHH----HHcCCcEEecCCCC-CCCCHHHHHHHHhhcCCcEEEECCCCCC
Confidence 5677888888887733 8999999774433333 333333 3344465 56789999999888778888888742
Q ss_pred ----cccHHHHHHHHHHHHHcCCcEEEec
Q 040341 163 ----IGSVTESIEAVKMSKRAGWGVMASH 187 (251)
Q Consensus 163 ----iGtlte~l~~~~~a~~~g~~~ivs~ 187 (251)
+=+...-.+++++|+++++.++=-.
T Consensus 239 PtG~tms~~rR~~Ll~lA~~~~~~IIEDD 267 (459)
T COG1167 239 PTGVTMSLERRKALLALAEKYDVLIIEDD 267 (459)
T ss_pred CCCCccCHHHHHHHHHHHHHcCCeEEeeC
Confidence 3456777889999999999886433
No 326
>PRK08064 cystathionine beta-lyase; Provisional
Probab=33.46 E-value=2e+02 Score=27.00 Aligned_cols=102 Identities=22% Similarity=0.201 Sum_probs=67.1
Q ss_pred ceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEee-c-cccccHHHHHHHHHHHHHcC
Q 040341 103 IVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK-V-NQIGSVTESIEAVKMSKRAG 180 (251)
Q Consensus 103 I~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK-~-nqiGtlte~l~~~~~a~~~g 180 (251)
-+.+-+|....-+..|..+.++.|-++..+ | +.+++.++.++..+ ...|.+- | |-.|.+.+.-++.++|+++|
T Consensus 94 ~Vlv~~~~y~~~~~~~~~~~~~~G~~v~~v-~---~~d~~~l~~~l~~~-tklV~l~~p~NptG~~~dl~~I~~la~~~g 168 (390)
T PRK08064 94 HVLISEDVYGGTYRMITEVLSRFGIEHTFV-D---MTNLEEVAQNIKPN-TKLFYVETPSNPLLKVTDIRGVVKLAKAIG 168 (390)
T ss_pred EEEEccCccchHHHHHHHHHHHcCCEEEEE-C---CCCHHHHHHhcCCC-ceEEEEECCCCCCcEeccHHHHHHHHHHcC
Confidence 344456666556778888777787666555 2 24678888887654 3444443 4 45788888889999999999
Q ss_pred CcEEEecCCCCCC----chhHhhhhhhcccCcc
Q 040341 181 WGVMASHRSGETE----DTFIADLSVGLATGQI 209 (251)
Q Consensus 181 ~~~ivs~rsgEt~----d~~iadLAva~~~~~i 209 (251)
+.++|-...+..- ...-+|+.+.+...++
T Consensus 169 ~~vvvD~a~~~~~~~~~~~~g~Divv~S~tK~~ 201 (390)
T PRK08064 169 CLTFVDNTFLTPLLQKPLDLGADVVLHSATKFL 201 (390)
T ss_pred CEEEEECCCCcccccCchhhCCcEEEeecceec
Confidence 9888876533321 1223577777766655
No 327
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=33.44 E-value=2.3e+02 Score=27.91 Aligned_cols=121 Identities=12% Similarity=0.114 Sum_probs=73.6
Q ss_pred hhHHHHHHHhhhc-CCceee--cCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeE-------
Q 040341 88 DGLKNVYRSFISD-HPIVSI--EDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALL------- 157 (251)
Q Consensus 88 ~elid~~~~l~~~-ypI~~I--EDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~il------- 157 (251)
.+..+....|++. ...+.| =++-.+.=.+.-+++.+.. ..++|+.+ ++.+.+.++.+++.|+ ++|-
T Consensus 224 ~~~~~ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~~~-~~~~vi~g--~~~t~~~~~~l~~~G~-d~i~vg~g~Gs 299 (475)
T TIGR01303 224 GDVGGKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRALD-LGVPIVAG--NVVSAEGVRDLLEAGA-NIIKVGVGPGA 299 (475)
T ss_pred ccHHHHHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHHHC-CCCeEEEe--ccCCHHHHHHHHHhCC-CEEEECCcCCc
Confidence 3445777777664 333332 2333333333444444444 25888886 5788899888887654 3322
Q ss_pred ------eeccccccHHHHHHHHHHHHHcCCcEEEecCCCCCCchhHhhhhhhcccCccccCCCC
Q 040341 158 ------LKVNQIGSVTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPC 215 (251)
Q Consensus 158 ------IK~nqiGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d~~iadLAva~~~~~ik~G~~~ 215 (251)
+.---+.+++..+++++.+++.|+++|-+.+--.+.| .=-|+++|+..+..|++.
T Consensus 300 ~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~~viadGgi~~~~d---i~kala~GA~~vm~g~~~ 360 (475)
T TIGR01303 300 MCTTRMMTGVGRPQFSAVLECAAEARKLGGHVWADGGVRHPRD---VALALAAGASNVMVGSWF 360 (475)
T ss_pred cccCccccCCCCchHHHHHHHHHHHHHcCCcEEEeCCCCCHHH---HHHHHHcCCCEEeechhh
Confidence 1112346788889999999999999888876544432 123455666677777664
No 328
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=33.31 E-value=1.3e+02 Score=24.97 Aligned_cols=63 Identities=14% Similarity=0.302 Sum_probs=43.8
Q ss_pred HHHHHHHHhccCcceeEeeccccc---cHHHHHHHHHHHHHcCCcEEEecCCCCCCchhHhhhhhhcccCccccCC
Q 040341 141 PKRVEKAIKEKTCNALLLKVNQIG---SVTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGA 213 (251)
Q Consensus 141 ~~~i~~~i~~~a~n~ilIK~nqiG---tlte~l~~~~~a~~~g~~~ivs~rsgEt~d~~iadLAva~~~~~ik~G~ 213 (251)
.+.++++++.+ ...+.|+.-... -...+.++.++|++++..++|..+ .|+|..+++.-+-.|.
T Consensus 15 ~~~l~~~~~~g-v~~v~lR~k~~~~~~~~~~a~~l~~~~~~~~~~liin~~---------~~la~~~~~dGvHl~~ 80 (180)
T PF02581_consen 15 LEQLEAALAAG-VDLVQLREKDLSDEELLELARRLAELCQKYGVPLIINDR---------VDLALELGADGVHLGQ 80 (180)
T ss_dssp HHHHHHHHHTT--SEEEEE-SSS-HHHHHHHHHHHHHHHHHTTGCEEEES----------HHHHHHCT-SEEEEBT
T ss_pred HHHHHHHHHCC-CcEEEEcCCCCCccHHHHHHHHHHHHhhcceEEEEecCC---------HHHHHhcCCCEEEecc
Confidence 56777888877 777877764422 234466777899999999999998 8999999886665554
No 329
>PRK03739 2-isopropylmalate synthase; Validated
Probab=33.24 E-value=2.9e+02 Score=27.70 Aligned_cols=119 Identities=16% Similarity=0.160 Sum_probs=70.9
Q ss_pred CCCccChhhHHHHHHHhhhcCCceeecCCC---CcccHHHHHHHHhh-h-CCceEEEcccccccC-HHHHHHHHhc--cC
Q 040341 81 GSQKVSGDGLKNVYRSFISDHPIVSIEDPF---DQDDWEHHAELTGK-I-GRHVQIVGDDLLVTN-PKRVEKAIKE--KT 152 (251)
Q Consensus 81 ~~~~~s~~elid~~~~l~~~ypI~~IEDP~---~e~D~~~~~~l~~~-l-g~~~~ivgDdl~vtn-~~~i~~~i~~--~a 152 (251)
++..+|.+|=+.++.. +++.++-.||=.| .+.|++..+.+.+. + .+.+.+++ ++.+ ..+++.+++. ++
T Consensus 45 ~gv~~s~~~Ki~ia~~-L~~~GV~~IE~GfP~~s~~e~e~v~~i~~~~~~~~~~~i~~---l~r~~~~di~~a~~a~~~~ 120 (552)
T PRK03739 45 LIEPMSPERKLRMFDL-LVKIGFKEIEVGFPSASQTDFDFVRELIEEGLIPDDVTIQV---LTQAREHLIERTFEALEGA 120 (552)
T ss_pred CCCCCCHHHHHHHHHH-HHHcCCCEEEEECCCcChHHHHHHHHHHHhcCCCCCCEEEE---EeccchhHHHHHHHHhcCC
Confidence 4568999998897777 5999999999855 57777888888544 2 12334442 3334 4457777664 22
Q ss_pred c---ceeEeecc-------ccccHHHH----HHHHHHHHHcC-------CcEEEecC-CCCCCchhHhhhhhh
Q 040341 153 C---NALLLKVN-------QIGSVTES----IEAVKMSKRAG-------WGVMASHR-SGETEDTFIADLSVG 203 (251)
Q Consensus 153 ~---n~ilIK~n-------qiGtlte~----l~~~~~a~~~g-------~~~ivs~r-sgEt~d~~iadLAva 203 (251)
. =.+.++.+ .--|..|+ .+++++|+++| +.|.++.. ...++-.|+..++=+
T Consensus 121 ~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~~~~~~~~~~~v~f~~EDasR~d~~~l~~~~~~ 193 (552)
T PRK03739 121 KRAIVHLYNSTSPLQRRVVFGKDRDGIKAIAVDGARLVKELAAKYPETEWRFEYSPESFTGTELDFALEVCDA 193 (552)
T ss_pred CCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCceeEEEEecccCCCCCHHHHHHHHHH
Confidence 1 11222221 12355554 56677888888 44444442 122666777766544
No 330
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=33.24 E-value=2.1e+02 Score=24.67 Aligned_cols=93 Identities=15% Similarity=0.018 Sum_probs=50.2
Q ss_pred ccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHh-----ccCcceeEeec----cccccHHHHHH-HHHHHHHcCCc
Q 040341 113 DDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIK-----EKTCNALLLKV----NQIGSVTESIE-AVKMSKRAGWG 182 (251)
Q Consensus 113 ~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~-----~~a~n~ilIK~----nqiGtlte~l~-~~~~a~~~g~~ 182 (251)
+|+..|..+...+ ++-+.||. +. +-|..+++ ..+-+-++|=+ |--|.++ -.+ ++++|++.|++
T Consensus 72 ~~~~~l~~~l~~~--q~g~ag~~-Ta---dAi~~av~rl~~~~~a~~kvvILLTDG~n~~~~i~-P~~aAa~lA~~~gV~ 144 (191)
T cd01455 72 ERLETLKMMHAHS--QFCWSGDH-TV---EATEFAIKELAAKEDFDEAIVIVLSDANLERYGIQ-PKKLADALAREPNVN 144 (191)
T ss_pred hHHHHHHHHHHhc--ccCccCcc-HH---HHHHHHHHHHHhcCcCCCcEEEEEeCCCcCCCCCC-hHHHHHHHHHhCCCE
Confidence 4556777777666 45556764 22 55555542 22233333333 2345654 445 57999999998
Q ss_pred E-EEecCCCCCCchhHhhhhhhcccCccccCCC
Q 040341 183 V-MASHRSGETEDTFIADLSVGLATGQIKTGAP 214 (251)
Q Consensus 183 ~-ivs~rsgEt~d~~iadLAva~~~~~ik~G~~ 214 (251)
+ .|+-.+. .+..+..+|--.+..+..+.+.
T Consensus 145 iytIgiG~~--d~~~l~~iA~~tgG~~F~A~d~ 175 (191)
T cd01455 145 AFVIFIGSL--SDEADQLQRELPAGKAFVCMDT 175 (191)
T ss_pred EEEEEecCC--CHHHHHHHHhCCCCcEEEeCCH
Confidence 8 4444331 2333455555555555555443
No 331
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=33.18 E-value=1.6e+02 Score=22.11 Aligned_cols=49 Identities=22% Similarity=0.368 Sum_probs=33.4
Q ss_pred ceeEeeccccccHHHHHHHHHHHHHcCCcEEEecCCCCCCchhHhhhhh
Q 040341 154 NALLLKVNQIGSVTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSV 202 (251)
Q Consensus 154 n~ilIK~nqiGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d~~iadLAv 202 (251)
+.++|=.++-|.-.+.+++++.|+++|.++++=....++.-.-.+|..+
T Consensus 61 ~~~~i~iS~~g~~~~~~~~~~~a~~~g~~iv~iT~~~~~~l~~~~d~~i 109 (139)
T cd05013 61 GDVVIAISFSGETKETVEAAEIAKERGAKVIAITDSANSPLAKLADIVL 109 (139)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEcCCCCChhHHhcCEEE
Confidence 3455556777777889999999999999886655445554444455443
No 332
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=32.91 E-value=2.4e+02 Score=22.33 Aligned_cols=81 Identities=14% Similarity=0.195 Sum_probs=44.7
Q ss_pred cChhhHHHHHHHhhhcCC--ce--eecCCCC--cccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEe
Q 040341 85 VSGDGLKNVYRSFISDHP--IV--SIEDPFD--QDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLL 158 (251)
Q Consensus 85 ~s~~elid~~~~l~~~yp--I~--~IEDP~~--e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilI 158 (251)
.+.+.+.+.+.+++.+.+ ++ +.++... ..|..+|++|.+.+ ..+..+.|++
T Consensus 18 ~sle~Q~~~l~~~a~~~g~~i~~~~~D~~~SG~~~~Rp~l~~ll~~~-----------------------~~g~vd~vvv 74 (140)
T cd03770 18 NSIENQKAILEEYAKENGLENIRHYIDDGFSGTTFDRPGFNRMIEDI-----------------------EAGKIDIVIV 74 (140)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEEEEcCCCcCCcCCCHHHHHHHHHH-----------------------HcCCCCEEEE
Confidence 456666777777766544 32 3333332 23456666655544 2222333333
Q ss_pred e-ccccc-cHHHHHHHHHHHHHc-CCcEEEecC
Q 040341 159 K-VNQIG-SVTESIEAVKMSKRA-GWGVMASHR 188 (251)
Q Consensus 159 K-~nqiG-tlte~l~~~~~a~~~-g~~~ivs~r 188 (251)
+ +.++| .+.+++..++.+.+. |+.+++-..
T Consensus 75 ~~ldRl~R~~~d~~~~~~~l~~~~gv~l~~~~~ 107 (140)
T cd03770 75 KDMSRLGRNYLKVGLYMEILFPKKGVRFIAIND 107 (140)
T ss_pred eccchhccCHHHHHHHHHHHHhhcCcEEEEecC
Confidence 3 33333 457788888877776 998877553
No 333
>TIGR03599 YloV DAK2 domain fusion protein YloV. This model describes a protein family that contains an N-terminal DAK2 domain (pfam02734), so named because of similarity to the dihydroxyacetone kinase family family. The GTP-binding protein CgtA (a member of the obg family) is a bacterial GTPase associated with ribosome biogenesis, and it has a characteristic extension (TIGR03595) in certain lineages. This protein family described here was found, by the method of partial phylognetic profiling, to have a phylogenetic distribution strongly correlated to that of TIGR03595. This correlation implies some form of functional coupling.
Probab=32.79 E-value=2.1e+02 Score=28.64 Aligned_cols=61 Identities=21% Similarity=0.292 Sum_probs=47.7
Q ss_pred HHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeeccccccHHHHHHHHHHH
Q 040341 116 EHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMS 176 (251)
Q Consensus 116 ~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqiGtlte~l~~~~~a 176 (251)
++++++-+.+|-.+.|.|+...--+.+++-++|+.-.+.-|+|=||---.+..+-+++++.
T Consensus 324 ~g~~~~f~~~Ga~~vi~ggqt~nPS~~dll~ai~~~~a~~V~iLPNn~nii~aA~qa~~~~ 384 (530)
T TIGR03599 324 EGIAELFKSLGADVVIEGGQTMNPSTEDILKAIEKVNAKNVFVLPNNKNIILAAEQAAELA 384 (530)
T ss_pred chHHHHHHHCCCCEEEeCCCCCCCCHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHh
Confidence 5778888899877778888733335689999999888888888899977777777777764
No 334
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=32.78 E-value=2.7e+02 Score=26.28 Aligned_cols=31 Identities=16% Similarity=0.210 Sum_probs=24.0
Q ss_pred ccHHHHHHHHHHHHHcCCcEEEecCCCCCCc
Q 040341 164 GSVTESIEAVKMSKRAGWGVMASHRSGETED 194 (251)
Q Consensus 164 Gtlte~l~~~~~a~~~g~~~ivs~rsgEt~d 194 (251)
-+++...++++.+++++..++|+-.-|-+-|
T Consensus 72 p~~~~v~~~~~~~~~~~~D~IiaiGGGS~iD 102 (383)
T PRK09860 72 PTTENVAAGLKLLKENNCDSVISLGGGSPHD 102 (383)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEeCCchHHH
Confidence 4778888888889999999998887555533
No 335
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=32.61 E-value=1.4e+02 Score=25.24 Aligned_cols=81 Identities=15% Similarity=0.103 Sum_probs=50.2
Q ss_pred ccCHHHHHHHHhccCcce--eEeec--cccccHHHHHHHHHHHHH--cCCcEEEecCCCCCCchhHhhhhhhcccCcccc
Q 040341 138 VTNPKRVEKAIKEKTCNA--LLLKV--NQIGSVTESIEAVKMSKR--AGWGVMASHRSGETEDTFIADLSVGLATGQIKT 211 (251)
Q Consensus 138 vtn~~~i~~~i~~~a~n~--ilIK~--nqiGtlte~l~~~~~a~~--~g~~~ivs~rsgEt~d~~iadLAva~~~~~ik~ 211 (251)
+|++++++.+++.+ ++. +..|+ .|.=+..++.++.+.++. .+..+++..+ ...|.++|-.+++..+-.
T Consensus 6 i~~~ed~~~a~~~G-vd~ig~i~~~~s~R~v~~~~a~~l~~~~~~~~~~V~v~vn~~-----~~~i~~ia~~~~~d~Vql 79 (203)
T cd00405 6 ITTLEDALAAAEAG-ADAIGFIFAPKSPRYVSPEQAREIVAALPPFVKRVGVFVNED-----LEEILEIAEELGLDVVQL 79 (203)
T ss_pred CCCHHHHHHHHHcC-CCEEEEecCCCCCCCCCHHHHHHHHHhCCCCCcEEEEEeCCC-----HHHHHHHHHhcCCCEEEE
Confidence 57888888888776 233 23332 233357777777777776 6666666554 345667888888888877
Q ss_pred CCCCchhHHHHhh
Q 040341 212 GAPCRSERLAKYN 224 (251)
Q Consensus 212 G~~~r~Er~aKyN 224 (251)
++.-..+.+....
T Consensus 80 hg~e~~~~~~~l~ 92 (203)
T cd00405 80 HGDESPEYCAQLR 92 (203)
T ss_pred CCCCCHHHHHHHH
Confidence 7654334444443
No 336
>TIGR00474 selA seryl-tRNA(sec) selenium transferase. In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.
Probab=32.43 E-value=1.5e+02 Score=28.85 Aligned_cols=68 Identities=28% Similarity=0.322 Sum_probs=44.7
Q ss_pred HhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeeccc---cc--cHHHHHHHHHHHHHcCCcEEEecCCC
Q 040341 122 TGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQ---IG--SVTESIEAVKMSKRAGWGVMASHRSG 190 (251)
Q Consensus 122 ~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nq---iG--tlte~l~~~~~a~~~g~~~ivs~rsg 190 (251)
.++.|-++..++-+ ..++++++++++..+..-.+...++. .| .+...-+++++|+++|..++|-+.+|
T Consensus 183 ~~~~G~~~~~v~~~-~~~~l~dle~aI~~~T~lv~~~h~sN~~~~G~~~~~dl~~I~~la~~~g~~vivD~~sG 255 (454)
T TIGR00474 183 MEQSGAKLVEVGTT-NRTHLKDYEDAITENTALLLKVHTSNYRIVGFTEEVSIAELVALGREHGLPVMEDLGSG 255 (454)
T ss_pred HHHcCCEEEEeCCC-CCCCHHHHHHhcCcCCEEEEEEccCcccccCCCCCCCHHHHHHHHHHcCCeEEEECCCc
Confidence 34455566666533 24678899998876533223344433 24 36677788999999999999987654
No 337
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=32.39 E-value=4.4e+02 Score=24.99 Aligned_cols=121 Identities=16% Similarity=0.238 Sum_probs=69.3
Q ss_pred CCccChhhHHHHHHHhhhc-CC-ceeecCCCCc--ccH---HHHHHHHhhhCC-----ceEEEcccccccCHHHHHHHHh
Q 040341 82 SQKVSGDGLKNVYRSFISD-HP-IVSIEDPFDQ--DDW---EHHAELTGKIGR-----HVQIVGDDLLVTNPKRVEKAIK 149 (251)
Q Consensus 82 ~~~~s~~elid~~~~l~~~-yp-I~~IEDP~~e--~D~---~~~~~l~~~lg~-----~~~ivgDdl~vtn~~~i~~~i~ 149 (251)
-++++++++++-.+.|.++ +. |+++=|.|.. .|+ ..+..|.+.+.. .+.+.--+....+.+.++...+
T Consensus 165 ~r~r~~e~Vv~Ei~~l~~~g~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~~g~~~i~~~~~~p~~i~~ell~~m~~ 244 (429)
T TIGR00089 165 ERSRPPEDILEEVKELVSKGVKEIVLLGQNVGAYGKDLKGETNLADLLRELSKIDGIERIRFGSSHPDDVTDDLIELIAE 244 (429)
T ss_pred CCCCCHHHHHHHHHHHHHCCCceEEEEeeccccccCCCCCCcCHHHHHHHHhcCCCCCEEEECCCChhhcCHHHHHHHHh
Confidence 4578899999988887653 33 5555444331 232 224555555421 1222111111124444544433
Q ss_pred cc-CcceeEe-----------eccccccHHHHHHHHHHHHHcC--Cc----EEEecCCCCCCchhHhhhhhh
Q 040341 150 EK-TCNALLL-----------KVNQIGSVTESIEAVKMSKRAG--WG----VMASHRSGETEDTFIADLSVG 203 (251)
Q Consensus 150 ~~-a~n~ilI-----------K~nqiGtlte~l~~~~~a~~~g--~~----~ivs~rsgEt~d~~iadLAva 203 (251)
.+ .|+.+.| ++++--+..+..++++.++++| +. +|+|. .|||+++|...+...
T Consensus 245 ~~~~~~~l~igiES~s~~vLk~m~R~~~~~~~~~~i~~lr~~~~~i~i~~~~IvG~-PgET~ed~~~tl~~i 315 (429)
T TIGR00089 245 NPKVCKHLHLPVQSGSDRILKRMNRKYTREEYLDIVEKIRAKIPDAAITTDIIVGF-PGETEEDFEETLDLV 315 (429)
T ss_pred CCCccCceeeccccCChHHHHhCCCCCCHHHHHHHHHHHHHHCCCCEEEeeEEEEC-CCCCHHHHHHHHHHH
Confidence 32 3565554 4566679999999999999998 44 35666 499998885544443
No 338
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=32.27 E-value=3.5e+02 Score=25.21 Aligned_cols=112 Identities=15% Similarity=0.119 Sum_probs=68.7
Q ss_pred HHHhhhcCCceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEee-c-cccccHHHHHH
Q 040341 94 YRSFISDHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK-V-NQIGSVTESIE 171 (251)
Q Consensus 94 ~~~l~~~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK-~-nqiGtlte~l~ 171 (251)
...++..=.-|.+.+|....=..-|..+.++.|-++..+ | +.+++.++++++. ....+.+- | |-.|.+...-+
T Consensus 78 ~l~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~v-d---~~d~~~le~~i~~-~tklv~le~psnptg~v~dl~~ 152 (378)
T TIGR01329 78 ITRLLNNGDEIIAGDDLYGGTDRLLTQVVPRSGVVVVHV-D---TTDLDKVKAALGP-KTKLVLLESPTNPLQKIVDIRK 152 (378)
T ss_pred HHHHhCCCCEEEEcCCCchHHHHHHHHHHHHcCcEEEEe-C---CCCHHHHHHhcCc-CceEEEEECCCCCCCeeecHHH
Confidence 334454333444556655333344666666776555444 2 2478999988864 34444443 4 55788888888
Q ss_pred HHHHHHHcCCcEEEecCCCCC----CchhHhhhhhhcccCccc
Q 040341 172 AVKMSKRAGWGVMASHRSGET----EDTFIADLSVGLATGQIK 210 (251)
Q Consensus 172 ~~~~a~~~g~~~ivs~rsgEt----~d~~iadLAva~~~~~ik 210 (251)
++++|+++|..++|-.-.+-. ....-+|+.|.+...++-
T Consensus 153 I~~la~~~g~~vivD~a~~~~~~~~~l~~g~Di~v~S~tK~l~ 195 (378)
T TIGR01329 153 ISEMAHAQNALVVVDNTMMSPLLCNPLELGADIVYHSATKFLA 195 (378)
T ss_pred HHHHHHHcCCEEEEECCCcccccCChhhcCCcEEEEecceecc
Confidence 999999999998887643211 112346888887776664
No 339
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=32.19 E-value=2.5e+02 Score=25.31 Aligned_cols=103 Identities=21% Similarity=0.203 Sum_probs=59.4
Q ss_pred CcHHHHHHHHHHHHhcCCccc-eeeeeehhhh---cccccCCcceeecCCCCCCCCCCccChhhHHHHHHHhhhcCCcee
Q 040341 30 ESYEGFELLKTAIAKGGYIGK-IVIGMDVAAS---EFYDSKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHPIVS 105 (251)
Q Consensus 30 ~~eeal~~i~~Ai~~aGy~~k-I~iglD~Aas---e~~~~~~g~Y~l~~~~~~~d~~~~~s~~elid~~~~l~~~ypI~~ 105 (251)
+.++.++++.+ +++.|.-.+ |.+-+|.... .++.+.-+.|.++ ....-++++|++.+++ ..+.++.
T Consensus 23 s~~ev~~v~~~-~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d-------~~~FPdp~~mi~~Lh~--~G~k~v~ 92 (292)
T cd06595 23 SDEEYLALMDR-FKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWN-------RKLFPDPEKLLQDLHD--RGLKVTL 92 (292)
T ss_pred CHHHHHHHHHH-HHHhCCCccEEEEecccccccccccccCCcceeEEC-------hhcCCCHHHHHHHHHH--CCCEEEE
Confidence 55777776666 557887654 5554443221 1122211234443 3455678999998887 4677999
Q ss_pred ecCCCC--cccHHHHHHHHhhhCCc----eEEEcccccccCHHHHH
Q 040341 106 IEDPFD--QDDWEHHAELTGKIGRH----VQIVGDDLLVTNPKRVE 145 (251)
Q Consensus 106 IEDP~~--e~D~~~~~~l~~~lg~~----~~ivgDdl~vtn~~~i~ 145 (251)
+.+|.- ..+-+.+.++.+..+.. ..++.| .|||+-.+
T Consensus 93 ~v~P~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~D---~tnp~a~~ 135 (292)
T cd06595 93 NLHPADGIRAHEDQYPEMAKALGVDPATEGPILFD---LTNPKFMD 135 (292)
T ss_pred EeCCCcccCCCcHHHHHHHHhcCCCcccCCeEEec---CCCHHHHH
Confidence 999974 22335566676665321 123343 47887443
No 340
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=32.15 E-value=3.3e+02 Score=25.79 Aligned_cols=112 Identities=18% Similarity=0.199 Sum_probs=65.8
Q ss_pred HHHHhhhcCCceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEee-c-cccccHHHHH
Q 040341 93 VYRSFISDHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK-V-NQIGSVTESI 170 (251)
Q Consensus 93 ~~~~l~~~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK-~-nqiGtlte~l 170 (251)
.+..++..=.-+.+.+|....-+..|....+..|-++..+ | ..+++.++.++..+ ...|.+- | |..|.+.+.-
T Consensus 88 al~~l~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~v-~---~~d~~~l~~~l~~~-t~~V~le~p~NPtg~v~dl~ 162 (418)
T TIGR01326 88 AILNLAQAGDNIVSSSYLYGGTYNLFKHTLKRLGIEVRFV-D---PDDPEEFEKAIDEN-TKAVFAETIGNPAINVPDIE 162 (418)
T ss_pred HHHHHhCCCCEEEEECCCcHHHHHHHHHHHHHcCcEEEEE-C---CCCHHHHHHhcCcC-CeEEEEECCCCCCCeecCHH
Confidence 3444444323344455655444555666667776555444 2 23788888888654 4455554 2 5667778888
Q ss_pred HHHHHHHHcCCcEEEecCCCC--CCch--hHhhhhhhcccCcc
Q 040341 171 EAVKMSKRAGWGVMASHRSGE--TEDT--FIADLSVGLATGQI 209 (251)
Q Consensus 171 ~~~~~a~~~g~~~ivs~rsgE--t~d~--~iadLAva~~~~~i 209 (251)
+++++|+++|+.++|-.-.+. ..++ .-+|+.+.+...++
T Consensus 163 ~I~~la~~~~i~livD~t~~~~~~~~~l~~g~Divv~S~sK~l 205 (418)
T TIGR01326 163 AIAEVAHAHGVPLIVDNTFATPYLCRPIDHGADIVVHSATKYI 205 (418)
T ss_pred HHHHHHHHcCCEEEEECCCchhhcCCchhcCCeEEEECccccc
Confidence 889999999998887653221 0111 11566665555444
No 341
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=32.14 E-value=40 Score=18.96 Aligned_cols=17 Identities=18% Similarity=0.286 Sum_probs=14.1
Q ss_pred ChhhHHHHHHHhhhcCC
Q 040341 86 SGDGLKNVYRSFISDHP 102 (251)
Q Consensus 86 s~~elid~~~~l~~~yp 102 (251)
..++.+++|.+++++||
T Consensus 15 ~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 15 DYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHHCc
Confidence 35677899999999998
No 342
>smart00857 Resolvase Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.
Probab=32.08 E-value=2.4e+02 Score=21.91 Aligned_cols=28 Identities=7% Similarity=0.381 Sum_probs=21.0
Q ss_pred cccccc-HHHHHHHHHHHHHcCCcEEEec
Q 040341 160 VNQIGS-VTESIEAVKMSKRAGWGVMASH 187 (251)
Q Consensus 160 ~nqiGt-lte~l~~~~~a~~~g~~~ivs~ 187 (251)
+++++- ..+.+..++.++.+|+.+++-.
T Consensus 74 ~~Rl~R~~~~~~~~~~~l~~~gi~l~~~~ 102 (148)
T smart00857 74 LDRLGRSLRDLLALLELLEKKGVRLVSVT 102 (148)
T ss_pred cchhhCcHHHHHHHHHHHHHCCCEEEECc
Confidence 444443 5578889999999999887655
No 343
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=32.07 E-value=3e+02 Score=27.42 Aligned_cols=74 Identities=15% Similarity=0.209 Sum_probs=49.9
Q ss_pred CHHHHHHHHhccCc----------ceeEeeccccccHHHHHHHHHHHHHcCCcEEEecC---CCCCCchhHhhhhhh---
Q 040341 140 NPKRVEKAIKEKTC----------NALLLKVNQIGSVTESIEAVKMSKRAGWGVMASHR---SGETEDTFIADLSVG--- 203 (251)
Q Consensus 140 n~~~i~~~i~~~a~----------n~ilIK~nqiGtlte~l~~~~~a~~~g~~~ivs~r---sgEt~d~~iadLAva--- 203 (251)
+.+.++...+.|.. +-++-.+|+.-|+.+.+++++.++++|+.+.+--+ -|+|.+.++.++...
T Consensus 205 ~~e~L~~L~~~G~~rVslGVQS~~d~VL~~inRght~~~v~~Ai~~lr~~G~~v~~~LM~GLPgqt~e~~~~t~~~l~~~ 284 (522)
T TIGR01211 205 REEHIDRMLKLGATRVELGVQTIYNDILERTKRGHTVRDVVEATRLLRDAGLKVVYHIMPGLPGSSFERDLEMFREIFED 284 (522)
T ss_pred CHHHHHHHHHcCCCEEEEECccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeEEEEeecCCCCCCHHHHHHHHHHHHhc
Confidence 55666655554432 22334568999999999999999999997632222 367877777666553
Q ss_pred --cccCccccCC
Q 040341 204 --LATGQIKTGA 213 (251)
Q Consensus 204 --~~~~~ik~G~ 213 (251)
+++.++++=.
T Consensus 285 ~~l~pD~Ikiyp 296 (522)
T TIGR01211 285 PRFKPDMLKIYP 296 (522)
T ss_pred cCCCcCEEEEec
Confidence 5677777655
No 344
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=32.03 E-value=4.4e+02 Score=24.78 Aligned_cols=37 Identities=14% Similarity=0.156 Sum_probs=24.5
Q ss_pred HHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEe
Q 040341 119 AELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLL 158 (251)
Q Consensus 119 ~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilI 158 (251)
+.+.+.+ +++|++-- -+++++.++++++.+.++.|.+
T Consensus 282 ~~ik~~~--~~pvi~~G-~i~~~~~~~~~l~~g~~D~V~~ 318 (370)
T cd02929 282 KFVKQVT--SKPVVGVG-RFTSPDKMVEVVKSGILDLIGA 318 (370)
T ss_pred HHHHHHC--CCCEEEeC-CCCCHHHHHHHHHcCCCCeeee
Confidence 3456666 34444332 2678999999999888877554
No 345
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=32.03 E-value=2.3e+02 Score=26.35 Aligned_cols=72 Identities=11% Similarity=0.155 Sum_probs=41.1
Q ss_pred HhhhC-CceEEEcccccccCHHHHHHHHhccCcceeEe-eccccccHHHHHHHHHHHHHcCCcEEEecCCCCCCc
Q 040341 122 TGKIG-RHVQIVGDDLLVTNPKRVEKAIKEKTCNALLL-KVNQIGSVTESIEAVKMSKRAGWGVMASHRSGETED 194 (251)
Q Consensus 122 ~~~lg-~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilI-K~nqiGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d 194 (251)
.+++| .++.||.|..+. -.+.++..++......... ....--+++...++++.+++++..++|+-.-|-.-|
T Consensus 18 ~~~~g~~~~livtd~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs~~D 91 (367)
T cd08182 18 LKGLGGKRVLLVTGPRSA-IASGLTDILKPLGTLVVVFDDVQPNPDLEDLAAGIRLLREFGPDAVLAVGGGSVLD 91 (367)
T ss_pred HHhcCCCeEEEEeCchHH-HHHHHHHHHHHcCCeEEEEcCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCCcHHHH
Confidence 33444 466677666322 2334444443222222222 122334778888888999999999999887555543
No 346
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=32.02 E-value=2.7e+02 Score=22.35 Aligned_cols=91 Identities=10% Similarity=-0.022 Sum_probs=63.4
Q ss_pred HHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeeccccccHHHHHHHHHHHHHc---CCcEEEecCC--CCCCch
Q 040341 121 LTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRA---GWGVMASHRS--GETEDT 195 (251)
Q Consensus 121 l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqiGtlte~l~~~~~a~~~---g~~~ivs~rs--gEt~d~ 195 (251)
+-+.-|-++.-.|-++ .++++..++....++.|.|....-.+...+.+.++..++. ++.+|+|... ++....
T Consensus 26 ~lr~~G~eVi~LG~~v---p~e~i~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~ 102 (137)
T PRK02261 26 ALTEAGFEVINLGVMT---SQEEFIDAAIETDADAILVSSLYGHGEIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDFE 102 (137)
T ss_pred HHHHCCCEEEECCCCC---CHHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHHHHHhcCCCCCeEEEECCCCCCccChH
Confidence 3445566777777774 6788888888889999999876667888888888888888 5668898864 222233
Q ss_pred hHhhhhhhcccCccccCCC
Q 040341 196 FIADLSVGLATGQIKTGAP 214 (251)
Q Consensus 196 ~iadLAva~~~~~ik~G~~ 214 (251)
.+..-+-.+|...++.++-
T Consensus 103 ~~~~~l~~~G~~~vf~~~~ 121 (137)
T PRK02261 103 EVEKKFKEMGFDRVFPPGT 121 (137)
T ss_pred HHHHHHHHcCCCEEECcCC
Confidence 3445566666555666443
No 347
>PRK05957 aspartate aminotransferase; Provisional
Probab=32.01 E-value=1.9e+02 Score=26.85 Aligned_cols=85 Identities=16% Similarity=0.177 Sum_probs=51.5
Q ss_pred hhcCCceeecCCCCcccHHHHHHHHhhhCCceEEE-cccccccCHHHHHHHHhccCcceeEe-ec-cccc---cHHHHHH
Q 040341 98 ISDHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIV-GDDLLVTNPKRVEKAIKEKTCNALLL-KV-NQIG---SVTESIE 171 (251)
Q Consensus 98 ~~~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~iv-gDdl~vtn~~~i~~~i~~~a~n~ilI-K~-nqiG---tlte~l~ 171 (251)
++.=.-+.+++|....-.. ..+..|-++..+ -|+-+..+++.++..+..+ +..+.+ -| |-.| +..+.-+
T Consensus 110 ~~~gd~Vlv~~P~y~~~~~----~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~-~klv~~~~p~NPtG~~~~~~~~~~ 184 (389)
T PRK05957 110 TDPGDEIILNTPYYFNHEM----AITMAGCQPILVPTDDNYQLQPEAIEQAITPK-TRAIVTISPNNPTGVVYPEALLRA 184 (389)
T ss_pred cCCCCEEEEeCCCCcCHHH----HHHhcCCEEEEeecCCCCCcCHHHHHHhcCcC-ceEEEEeCCCCCCCcCcCHHHHHH
Confidence 3433478889998754322 223455443333 2332466899999887643 444443 34 3345 4556888
Q ss_pred HHHHHHHcCCcEEEec
Q 040341 172 AVKMSKRAGWGVMASH 187 (251)
Q Consensus 172 ~~~~a~~~g~~~ivs~ 187 (251)
++++|+++|+.+++-.
T Consensus 185 i~~~a~~~~~~li~De 200 (389)
T PRK05957 185 VNQICAEHGIYHISDE 200 (389)
T ss_pred HHHHHHHcCcEEEEec
Confidence 8999999998887654
No 348
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=31.92 E-value=2e+02 Score=26.43 Aligned_cols=84 Identities=13% Similarity=0.173 Sum_probs=54.1
Q ss_pred ceeecCCCCcccHHHHHHHHhhhCCceEEE-ccc-ccccCHHHHHHHHhccCcceeEe-ec-cccccHHHHHHHHHHHHH
Q 040341 103 IVSIEDPFDQDDWEHHAELTGKIGRHVQIV-GDD-LLVTNPKRVEKAIKEKTCNALLL-KV-NQIGSVTESIEAVKMSKR 178 (251)
Q Consensus 103 I~~IEDP~~e~D~~~~~~l~~~lg~~~~iv-gDd-l~vtn~~~i~~~i~~~a~n~ilI-K~-nqiGtlte~l~~~~~a~~ 178 (251)
-+.+-+|-+..-+..|..+.+..|-++..+ .|+ -..-+++.+++.+..+ ...+.| -| |-.|.+.+.-+++++|++
T Consensus 106 ~vl~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~i~~~-~~lv~i~~~~n~tG~~~~~~~i~~~~~~ 184 (397)
T TIGR01976 106 EVIVTRLDHEANISPWLQAAERAGAKVKWARVDEATGELHPDDLASLLSPR-TRLVAVTAASNTLGSIVDLAAITELVHA 184 (397)
T ss_pred EEEEcCCchHhHHHHHHHHHHhcCCEEEEEeccccCCCcCHHHHHHhcCCC-ceEEEEeCCCCCCCccCCHHHHHHHHHH
Confidence 344445544445567777766666555444 231 1344688998888653 333443 24 668888888889999999
Q ss_pred cCCcEEEec
Q 040341 179 AGWGVMASH 187 (251)
Q Consensus 179 ~g~~~ivs~ 187 (251)
+|+.++|-.
T Consensus 185 ~~~~~ivD~ 193 (397)
T TIGR01976 185 AGALVVVDA 193 (397)
T ss_pred cCCEEEEeh
Confidence 999887755
No 349
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=31.89 E-value=5.2e+02 Score=25.62 Aligned_cols=122 Identities=15% Similarity=0.165 Sum_probs=69.3
Q ss_pred CCccChhhHHHHHHHhhhc-CC-ceeecCCCCc--ccH----HHHHHHHhhhCC----ceEEEcccccccCHHHHHHHHh
Q 040341 82 SQKVSGDGLKNVYRSFISD-HP-IVSIEDPFDQ--DDW----EHHAELTGKIGR----HVQIVGDDLLVTNPKRVEKAIK 149 (251)
Q Consensus 82 ~~~~s~~elid~~~~l~~~-yp-I~~IEDP~~e--~D~----~~~~~l~~~lg~----~~~ivgDdl~vtn~~~i~~~i~ 149 (251)
.++.+++++++-.+.|.++ |. |..+-|=|.. .|+ ..+..|.+.+.. ++.+..-...--+.+.+....+
T Consensus 238 ~Rsr~~e~Ii~Ei~~l~~~G~keI~L~g~n~~~yg~d~~~~~~~l~~Ll~~I~~~~i~~ir~~s~~P~~i~deli~~m~~ 317 (509)
T PRK14327 238 ERSRRPEDIIQEVRHLARQGYKEITLLGQNVNAYGKDFEDIEYGLGDLMDEIRKIDIPRVRFTTSHPRDFDDHLIEVLAK 317 (509)
T ss_pred CeeCCHHHHHHHHHHHHHCCCcEEEEEeeccccCcccccccchHHHHHHHHHHhCCCceEEEeecCcccCCHHHHHHHHh
Confidence 3578899999988887654 33 4444443321 122 235666666521 1222211100012344443333
Q ss_pred ccC-cce-----------eEeeccccccHHHHHHHHHHHHHc--CCc----EEEecCCCCCCchhHhhhhhhc
Q 040341 150 EKT-CNA-----------LLLKVNQIGSVTESIEAVKMSKRA--GWG----VMASHRSGETEDTFIADLSVGL 204 (251)
Q Consensus 150 ~~a-~n~-----------ilIK~nqiGtlte~l~~~~~a~~~--g~~----~ivs~rsgEt~d~~iadLAva~ 204 (251)
.+. |+. +|=++|+--|..+.+++++.++++ ++. +|||. .|||+++|-..+.+..
T Consensus 318 ~g~~~~~l~lgvQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~p~i~i~tdiIvGf-PgET~edf~~Tl~~v~ 389 (509)
T PRK14327 318 GGNLVEHIHLPVQSGSTEVLKIMARKYTRESYLELVRKIKEAIPNVALTTDIIVGF-PNETDEQFEETLSLYR 389 (509)
T ss_pred cCCccceEEeccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCcEEeeeEEEeC-CCCCHHHHHHHHHHHH
Confidence 321 222 222367878999999999999998 554 57777 5999998876655543
No 350
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=31.75 E-value=2.6e+02 Score=26.91 Aligned_cols=44 Identities=20% Similarity=0.342 Sum_probs=33.3
Q ss_pred ccccccHHHHHHHHHHHHHcCC-cE----EEecCCCCCCchhHhhhhhhc
Q 040341 160 VNQIGSVTESIEAVKMSKRAGW-GV----MASHRSGETEDTFIADLSVGL 204 (251)
Q Consensus 160 ~nqiGtlte~l~~~~~a~~~g~-~~----ivs~rsgEt~d~~iadLAva~ 204 (251)
+++..+..+++++++.++++|+ .+ |+|. .|+|.+++..+|..+.
T Consensus 180 l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~Gl-Pgqt~e~~~~~l~~~~ 228 (453)
T PRK09249 180 VNRIQPFEFTFALVEAARELGFTSINIDLIYGL-PKQTPESFARTLEKVL 228 (453)
T ss_pred hCCCCCHHHHHHHHHHHHHcCCCcEEEEEEccC-CCCCHHHHHHHHHHHH
Confidence 4677899999999999999998 33 3344 5899888776655443
No 351
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=31.71 E-value=1.1e+02 Score=24.87 Aligned_cols=63 Identities=22% Similarity=0.288 Sum_probs=36.1
Q ss_pred eEEEcccccccCHHHHHHHHhccCcceeEeeccccccHHHHHHHHHHHHHcCCcEEEecCCCCCC
Q 040341 129 VQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAGWGVMASHRSGETE 193 (251)
Q Consensus 129 ~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqiGtlte~l~~~~~a~~~g~~~ivs~rsgEt~ 193 (251)
+-=+|.+.-++-.+-++...+...+.+|++=+-.++--.+.+++++.+... +.+|--..|.|+
T Consensus 31 ~vs~Gn~~dv~~~d~l~~~~~D~~t~~I~ly~E~~~d~~~f~~~~~~a~~~--KPVv~lk~Grt~ 93 (138)
T PF13607_consen 31 VVSVGNEADVDFADLLEYLAEDPDTRVIVLYLEGIGDGRRFLEAARRAARR--KPVVVLKAGRTE 93 (138)
T ss_dssp EEE-TT-SSS-HHHHHHHHCT-SS--EEEEEES--S-HHHHHHHHHHHCCC--S-EEEEE-----
T ss_pred EEEeCccccCCHHHHHHHHhcCCCCCEEEEEccCCCCHHHHHHHHHHHhcC--CCEEEEeCCCch
Confidence 344578876666777777777888899998888888888888888888777 455555555553
No 352
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=31.66 E-value=3.6e+02 Score=23.76 Aligned_cols=82 Identities=9% Similarity=-0.016 Sum_probs=50.9
Q ss_pred cCCceeecCCCCcccHHHHHHHHhhhCCceEEEcccccc---cCHHHHHHHHhccCcceeEeeccccccHHHHHHHHHHH
Q 040341 100 DHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLV---TNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMS 176 (251)
Q Consensus 100 ~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~v---tn~~~i~~~i~~~a~n~ilIK~nqiGtlte~l~~~~~a 176 (251)
+.-+++..+|+..+-...+....++.| +.|++.+.+- ++....-..+.....++|++= +...++..+++.+
T Consensus 139 ~vail~~~~~~g~~~~~~~~~~~~~~G--~~vv~~~~~~~~~~d~~~~v~~l~~~~pd~v~~~----~~~~~~~~~~~~~ 212 (312)
T cd06346 139 SVATTYINNDYGVGLADAFTKAFEALG--GTVTNVVAHEEGKSSYSSEVAAAAAGGPDALVVI----GYPETGSGILRSA 212 (312)
T ss_pred eEEEEEccCchhhHHHHHHHHHHHHcC--CEEEEEEeeCCCCCCHHHHHHHHHhcCCCEEEEe----cccchHHHHHHHH
Confidence 334667788888776777777777774 6677765332 343333333444456777653 2334677788888
Q ss_pred HHcCCcE-EEec
Q 040341 177 KRAGWGV-MASH 187 (251)
Q Consensus 177 ~~~g~~~-ivs~ 187 (251)
++.|+.. |+++
T Consensus 213 ~~~G~~~~~~~~ 224 (312)
T cd06346 213 YEQGLFDKFLLT 224 (312)
T ss_pred HHcCCCCceEee
Confidence 9999864 4544
No 353
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=31.60 E-value=1.1e+02 Score=25.75 Aligned_cols=31 Identities=16% Similarity=0.146 Sum_probs=15.0
Q ss_pred cCcceeEeeccccccHHHHHHHHHHHHHcCCcEEE
Q 040341 151 KTCNALLLKVNQIGSVTESIEAVKMSKRAGWGVMA 185 (251)
Q Consensus 151 ~a~n~ilIK~nqiGtlte~l~~~~~a~~~g~~~iv 185 (251)
..+++++|-+.- .+..++++.++++|++++.
T Consensus 54 ~~vdgiii~~~~----~~~~~~~~~~~~~~ipvV~ 84 (268)
T cd06289 54 HGVAGIILCPAA----GTSPDLLKRLAESGIPVVL 84 (268)
T ss_pred cCCCEEEEeCCC----CccHHHHHHHHhcCCCEEE
Confidence 345666665431 1112344555666666643
No 354
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=31.39 E-value=56 Score=27.96 Aligned_cols=46 Identities=22% Similarity=0.241 Sum_probs=29.2
Q ss_pred cHHHHHHHHHHHHHcCCcEEEecCCCCCCchhHhhhhhhcccCccccCCCCchhHHH
Q 040341 165 SVTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLA 221 (251)
Q Consensus 165 tlte~l~~~~~a~~~g~~~ivs~rsgEt~d~~iadLAva~~~~~ik~G~~~r~Er~a 221 (251)
++.|...+++.| ..+||. |+.+.|||.|++...+-.=++....|..
T Consensus 173 ~l~e~~ali~~a-----~~~I~~------Dtg~~HlA~a~~~p~v~lfg~t~~~~~~ 218 (247)
T PF01075_consen 173 SLRELAALISRA-----DLVIGN------DTGPMHLAAALGTPTVALFGPTNPERWG 218 (247)
T ss_dssp -HHHHHHHHHTS-----SEEEEE------SSHHHHHHHHTT--EEEEESSS-HHHHS
T ss_pred CHHHHHHHHhcC-----CEEEec------CChHHHHHHHHhCCEEEEecCCCHHHhC
Confidence 677766665543 367765 6889999999999887765555555543
No 355
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=31.25 E-value=2.2e+02 Score=27.68 Aligned_cols=77 Identities=19% Similarity=0.198 Sum_probs=48.8
Q ss_pred cHHHHHHHHhhhCCceEEEc----ccccccCHHHHHHHHhccC-cce--eEeecc--ccccHHHHHHHHHHHHHcCCcEE
Q 040341 114 DWEHHAELTGKIGRHVQIVG----DDLLVTNPKRVEKAIKEKT-CNA--LLLKVN--QIGSVTESIEAVKMSKRAGWGVM 184 (251)
Q Consensus 114 D~~~~~~l~~~lg~~~~ivg----Ddl~vtn~~~i~~~i~~~a-~n~--ilIK~n--qiGtlte~l~~~~~a~~~g~~~i 184 (251)
++.+..+-...+|-+...|- ++-+..+++.++++|+... .+. ++.-|+ ..|..-+.-++.++|+++|+.++
T Consensus 160 th~S~~kAi~~~G~~pv~Vd~~~d~~~~~iD~e~Le~aIt~~~~kai~~Vv~Tp~t~~~g~~ddL~eIa~la~k~gI~lI 239 (444)
T TIGR03531 160 DQKSCIKAISTAGFEPRVIETVLDGDELTTDVEDIERAIEEIGPDNILCVLSTTSCFAPRSPDDIEEIAKICANYDIPHI 239 (444)
T ss_pred ChHHHHHHHHHcCCeEEEeeeeecCcCCCcCHHHHHHHHHhccCCCEEEEEEcCCcCCCcchhCHHHHHHHHHHcCCEEE
Confidence 45555555555554332222 3447789999999998532 222 222333 22367788889999999999998
Q ss_pred EecCCC
Q 040341 185 ASHRSG 190 (251)
Q Consensus 185 vs~rsg 190 (251)
+-.--|
T Consensus 240 vDaAyg 245 (444)
T TIGR03531 240 VNNAYG 245 (444)
T ss_pred EECcCc
Confidence 876544
No 356
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=31.22 E-value=1.3e+02 Score=27.43 Aligned_cols=53 Identities=15% Similarity=0.243 Sum_probs=39.0
Q ss_pred ceEEE--cccccccCHHHHHHHHhccCcceeEeecccc---ccHHHHHHHHHHHHHcCCcE
Q 040341 128 HVQIV--GDDLLVTNPKRVEKAIKEKTCNALLLKVNQI---GSVTESIEAVKMSKRAGWGV 183 (251)
Q Consensus 128 ~~~iv--gDdl~vtn~~~i~~~i~~~a~n~ilIK~nqi---Gtlte~l~~~~~a~~~g~~~ 183 (251)
++||+ +|+ .++.+.++++++.|. ++|.+--+.. --+..|.+++++|+..|+.|
T Consensus 73 ~vPValHLDH--~~~~e~i~~ai~~Gf-tSVM~DgS~l~~eeNi~~T~~vv~~ah~~gv~V 130 (287)
T PF01116_consen 73 SVPVALHLDH--GKDFEDIKRAIDAGF-TSVMIDGSALPFEENIAITREVVEYAHAYGVSV 130 (287)
T ss_dssp TSEEEEEEEE--E-SHHHHHHHHHHTS-SEEEEE-TTS-HHHHHHHHHHHHHHHHHTT-EE
T ss_pred CCCEEeeccc--CCCHHHHHHHHHhCc-ccccccCCcCCHHHHHHHHHHHHHhhhhhCCEE
Confidence 35554 787 578999999999966 6778776653 34677889999999999988
No 357
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=31.11 E-value=2.4e+02 Score=26.43 Aligned_cols=68 Identities=24% Similarity=0.242 Sum_probs=43.1
Q ss_pred CceEEEccccccc-C--HHHHHHHHhccCcceeEe-eccccccHHHHHHHHHHHHHcCCcEEEecCCCCCCc
Q 040341 127 RHVQIVGDDLLVT-N--PKRVEKAIKEKTCNALLL-KVNQIGSVTESIEAVKMSKRAGWGVMASHRSGETED 194 (251)
Q Consensus 127 ~~~~ivgDdl~vt-n--~~~i~~~i~~~a~n~ilI-K~nqiGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d 194 (251)
.++.||.|..+.. + .+++...++....+.... ....--+++...++++.+++.+..++|+-.-|-.-|
T Consensus 27 kr~livtd~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD 98 (383)
T cd08186 27 SKVLLVTGKSAYKKSGAWDKVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKLGREFGAQAVIAIGGGSPID 98 (383)
T ss_pred CEEEEEcCccHHhhcChHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCccHHH
Confidence 4677777764322 2 356666665433333332 122234888888999999999999999887555544
No 358
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=31.11 E-value=96 Score=28.25 Aligned_cols=95 Identities=14% Similarity=0.178 Sum_probs=56.6
Q ss_pred CCceEEEcccccccCHHHHH-HHHh--------ccCcceeEeeccc---cccHHHHHHHHHHHHHcCCcEEEecCCCCCC
Q 040341 126 GRHVQIVGDDLLVTNPKRVE-KAIK--------EKTCNALLLKVNQ---IGSVTESIEAVKMSKRAGWGVMASHRSGETE 193 (251)
Q Consensus 126 g~~~~ivgDdl~vtn~~~i~-~~i~--------~~a~n~ilIK~nq---iGtlte~l~~~~~a~~~g~~~ivs~rsgEt~ 193 (251)
+.++.|++=-=+.-..+.+. +|+. .+-.++++||.|. .|++.++++.++.. ..+..+-|+..+-|
T Consensus 124 ~~~~~i~~TRKt~Pg~R~~~k~Av~~GGg~~HR~~L~d~ilikdnHi~~~g~v~~av~~~r~~-~~~~~I~VEv~tle-- 200 (277)
T PRK05742 124 GTQVKLLDTRKTLPGLRLAQKYAVTCGGCHNHRIGLYDAFLIKENHIAACGGIAQAVAAAHRI-APGKPVEVEVESLD-- 200 (277)
T ss_pred CCCeEEEecCCCCCchhHHHHHHHHhcCCccccCCCcccEEecHHHHHHhCCHHHHHHHHHHh-CCCCeEEEEeCCHH--
Confidence 44576663322222333333 3444 3456789999998 68888887666643 22344566654322
Q ss_pred chhHhhhhhhcccCccccCCCCchhHHHHhhHHH
Q 040341 194 DTFIADLSVGLATGQIKTGAPCRSERLAKYNQLL 227 (251)
Q Consensus 194 d~~iadLAva~~~~~ik~G~~~r~Er~aKyN~ll 227 (251)
. +.-|+..++.+|..+-+ ..|.+.+.-+++
T Consensus 201 -e--a~eA~~~gaD~I~LD~~-~~e~l~~~v~~~ 230 (277)
T PRK05742 201 -E--LRQALAAGADIVMLDEL-SLDDMREAVRLT 230 (277)
T ss_pred -H--HHHHHHcCCCEEEECCC-CHHHHHHHHHHh
Confidence 2 56677888999999544 667665554443
No 359
>cd00128 XPG Xeroderma pigmentosum G N- and I-regions (XPGN, XPGI); contains the HhH2 motif; domain in nucleases. XPG is a eukaryotic enzyme that functions in nucleotide-excision repair and transcription-coupled repair of oxidative DNA damage. Functionally/structurally related to FEN-1; divalent metal ion-dependent exo- and endonuclease, and bacterial and bacteriophage 5'3' exonucleases.
Probab=31.09 E-value=1.2e+02 Score=27.56 Aligned_cols=121 Identities=20% Similarity=0.228 Sum_probs=70.0
Q ss_pred hhHHHHHHHhhhcCCceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeeccccc-cH
Q 040341 88 DGLKNVYRSFISDHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIG-SV 166 (251)
Q Consensus 88 ~elid~~~~l~~~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqiG-tl 166 (251)
.++++..+++++.++|-+|+-|. |-| ...+.|.++ |.-.-|+.+|. ++ +..+ +..++.+++..+ .-
T Consensus 127 ~~~~~~~~~lL~~~gi~~i~ap~-EAd-aq~a~l~~~-g~v~~i~S~Ds------D~---l~fg-~~~vi~~~~~~~~~~ 193 (316)
T cd00128 127 PQMIEEAKELLRLMGIPYIVAPY-EAE-AQCAYLAKK-GLVDAIITEDS------DL---LLFG-APRVYRNLFDSGAKP 193 (316)
T ss_pred HHHHHHHHHHHHHcCCCEEECCc-CHH-HHHHHHHhC-CCeeEEEecCC------Ce---eeec-CceEEEecccCCCCc
Confidence 35578899999999999999995 444 345556554 32235666652 10 1122 344555555433 11
Q ss_pred HHHHHHHHHHHHcCCcEEEecCCCCCCchhHhhhhhhcccCccccCCCCchhHH-----HHhhHHHHHHHHh
Q 040341 167 TESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERL-----AKYNQLLRIEEEL 233 (251)
Q Consensus 167 te~l~~~~~a~~~g~~~ivs~rsgEt~d~~iadLAva~~~~~ik~G~~~r~Er~-----aKyN~llrie~~l 233 (251)
.+.++.-++.+..|+ ...-+.|+++-+|+.++. |-|.=|..+ .+|..+-.+-+.+
T Consensus 194 ~~~~~~~~~~~~lgl-----------~~~q~id~~~L~G~Dy~~-gv~giG~k~A~~li~~~~~~~~~~~~l 253 (316)
T cd00128 194 VEEIDLEKILKELGL-----------TREKLIDLAILLGCDYTE-GIPGIGPVTALKLIKKYGDIEKDIERL 253 (316)
T ss_pred eEEEEHHHHHHHcCC-----------CHHHHHHHHHhcCCCCCC-CCCCccHHHHHHHHHHcCChHHHHHHH
Confidence 122333344444433 246789999999999997 766656553 4566544443433
No 360
>COG4552 Eis Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]
Probab=31.07 E-value=40 Score=32.04 Aligned_cols=100 Identities=14% Similarity=0.171 Sum_probs=62.1
Q ss_pred CCccChhhHHHHHHHhhhcCCceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeecc
Q 040341 82 SQKVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVN 161 (251)
Q Consensus 82 ~~~~s~~elid~~~~l~~~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~n 161 (251)
+...+-.|+...|.++..+++ .+++- +-.-|++|.+.. .+....|-.. +-.+++.--++..+.
T Consensus 157 ~~~~~~~el~kIY~~~~q~~~-G~L~R-----~~~~W~~l~ke~--~~~~~~~~e~---------~k~~~p~GYily~~~ 219 (389)
T COG4552 157 NRPTEHRELEKIYEEWAQQVP-GYLDR-----PPVLWDKLLKEC--KAAPGYDRES---------GKLLHPDGYILYRVD 219 (389)
T ss_pred cCcchHHHHHHHHHHHHhhCC-CcccC-----CHHHHHHHHHhh--hhhhhhhhhc---------ccccCCceEEEEEeh
Confidence 344555688999999988888 44432 235688888877 4433322110 011223333444444
Q ss_pred c-cccHHHHHHHHHHHHHcCCcEEEecCCCCCCchhHh
Q 040341 162 Q-IGSVTESIEAVKMSKRAGWGVMASHRSGETEDTFIA 198 (251)
Q Consensus 162 q-iGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d~~ia 198 (251)
+ .--+.|.+..-..|++.=|..++||||.+.+.++++
T Consensus 220 ~~~~~IrE~vaLt~~A~~alw~fI~~h~sm~~~IS~~s 257 (389)
T COG4552 220 RTLARIRELVALTAEAHQALWRFIIGHDSMERNISIIS 257 (389)
T ss_pred hhhhhHHHHHhhhHHHHHHHHHHHHcccchhheeeEec
Confidence 3 234566677777889999999999999887655543
No 361
>cd07112 ALDH_GABALDH-PuuC Escherichia coli NADP+-dependent gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase PuuC-like. NADP+-dependent, gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (GABALDH) PuuC of Escherichia coli which catalyzes the conversion of putrescine to 4-aminobutanoate and other similar sequences are present in this CD.
Probab=30.94 E-value=60 Score=31.31 Aligned_cols=72 Identities=15% Similarity=0.175 Sum_probs=43.0
Q ss_pred HHhccCcceeEeeccccccHHHHHHHHHHHHHcCCcE----EEecCCCCCCchhHhhhhhhcccCccccCCCCchhHHHH
Q 040341 147 AIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAGWGV----MASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAK 222 (251)
Q Consensus 147 ~i~~~a~n~ilIK~nqiGtlte~l~~~~~a~~~g~~~----ivs~rsgEt~d~~iadLAva~~~~~ik~G~~~r~Er~aK 222 (251)
+..+.+.|++++||+.....+ +..++++.+++|++- +|.....+..+..+.|-.|. .-..+|++.-+.++++
T Consensus 146 ~~ALaaGN~Vv~Kps~~~p~~-~~~l~~~~~~aGlP~g~v~~v~g~~~~~~~~l~~~~~v~---~V~fTGs~~~g~~i~~ 221 (462)
T cd07112 146 APALAAGNSVVLKPAEQSPLT-ALRLAELALEAGLPAGVLNVVPGFGHTAGEALGLHMDVD---ALAFTGSTEVGRRFLE 221 (462)
T ss_pred HHHHHcCCeeeeeCCCCCCHH-HHHHHHHHHhcCCCCCcEEEEeCCCchHHHHHhcCCCcC---EEEEECCHHHHHHHHH
Confidence 445679999999999766555 456788889998762 33332222222222222221 2467887766666655
No 362
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing). The member from Methanococcus jannaschii contains an intein.
Probab=30.80 E-value=1.4e+02 Score=29.85 Aligned_cols=56 Identities=14% Similarity=0.237 Sum_probs=43.0
Q ss_pred cceeEeeccccccHHHHHHHHHHHHHcCCcEEEecCCCCCCchhHhhhhhhcccCc
Q 040341 153 CNALLLKVNQIGSVTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLATGQ 208 (251)
Q Consensus 153 ~n~ilIK~nqiGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d~~iadLAva~~~~~ 208 (251)
.+.++|=++|-|.-.+++++++.|+++|..++.=....++.-...+|..+-+.++.
T Consensus 338 ~~dlvI~iS~SG~T~e~v~a~~~ak~~ga~~IaIT~~~~S~La~~ad~~l~~~~~~ 393 (607)
T TIGR01135 338 KDTLVIAISQSGETADTLAALRLAKELGAKTLGICNVPGSTLVRESDHTLYTRAGP 393 (607)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHcCCcEEEEECCCCChHHhhcCceEEecCCC
Confidence 45677888999999999999999999998776555556666666677666665543
No 363
>PRK05927 hypothetical protein; Provisional
Probab=30.77 E-value=1.1e+02 Score=28.72 Aligned_cols=33 Identities=24% Similarity=0.348 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHcCCcE----EEecCCCCCCchhHhhh
Q 040341 166 VTESIEAVKMSKRAGWGV----MASHRSGETEDTFIADL 200 (251)
Q Consensus 166 lte~l~~~~~a~~~g~~~----ivs~rsgEt~d~~iadL 200 (251)
..+=+++++.|++.|+++ |+|| |||....+-||
T Consensus 184 ~~~rl~~i~~A~~lGi~~~sg~l~G~--gEt~e~ri~~l 220 (350)
T PRK05927 184 PDGWIQFHKLAHRLGFRSTATMMFGH--VESPEDILLHL 220 (350)
T ss_pred HHHHHHHHHHHHHcCCCcCceeEEee--CCCHHHHHHHH
Confidence 468899999999999987 8888 99965554444
No 364
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=30.77 E-value=1.5e+02 Score=26.51 Aligned_cols=71 Identities=23% Similarity=0.255 Sum_probs=42.4
Q ss_pred HHHHHHhccCcceeE--eeccc---cccHHHHHHHHHHHHHcCCcEEEec-CCC---CCC--c---hhHhhhhhhcccCc
Q 040341 143 RVEKAIKEKTCNALL--LKVNQ---IGSVTESIEAVKMSKRAGWGVMASH-RSG---ETE--D---TFIADLSVGLATGQ 208 (251)
Q Consensus 143 ~i~~~i~~~a~n~il--IK~nq---iGtlte~l~~~~~a~~~g~~~ivs~-rsg---Et~--d---~~iadLAva~~~~~ 208 (251)
.++++++.|+ +++- ++... --.+.+..++.+.|++.|+.++|-. -.| |+. + ...+.+|+-.++.+
T Consensus 98 ~ve~A~~~Ga-d~v~~~~~~g~~~~~~~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e~GAD~ 176 (267)
T PRK07226 98 TVEEAIKLGA-DAVSVHVNVGSETEAEMLEDLGEVAEECEEWGMPLLAMMYPRGPGIKNEYDPEVVAHAARVAAELGADI 176 (267)
T ss_pred cHHHHHHcCC-CEEEEEEecCChhHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCccCCCccHHHHHHHHHHHHHHCCCE
Confidence 4566777764 3333 33221 1235566677888999999987731 001 111 1 22357788899999
Q ss_pred cccCCC
Q 040341 209 IKTGAP 214 (251)
Q Consensus 209 ik~G~~ 214 (251)
+|+.-+
T Consensus 177 vKt~~~ 182 (267)
T PRK07226 177 VKTNYT 182 (267)
T ss_pred EeeCCC
Confidence 999854
No 365
>PLN02187 rooty/superroot1
Probab=30.75 E-value=4.5e+02 Score=25.30 Aligned_cols=160 Identities=12% Similarity=0.128 Sum_probs=88.3
Q ss_pred CCCCCCCcccccCCCCCcHHHHHHHHHHHHhc---CCccceeee---eehhhhcccccCCcceeecCCCCCCCCCCcc--
Q 040341 14 DATNVGDEGGFAPNIQESYEGFELLKTAIAKG---GYIGKIVIG---MDVAASEFYDSKDKTYDLNFKEENNDGSQKV-- 85 (251)
Q Consensus 14 ~~~~vgdeGGfap~~~~~eeal~~i~~Ai~~a---Gy~~kI~ig---lD~Aase~~~~~~g~Y~l~~~~~~~d~~~~~-- 85 (251)
...++||- .+.|.+..++++.+.+.++++.. +|.+ ..| +--+..+++.. .|.+.... .+-..
T Consensus 69 i~l~~Gdp-~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~--~~G~~~lR~aiA~~~~~---~~~~~~~~----~~I~it~ 138 (462)
T PLN02187 69 LPLGHGDP-SVYPCFRTCIEAEDAVVDVLRSGKGNSYGP--GAGILPARRAVADYMNR---DLPHKLTP----EDIFLTA 138 (462)
T ss_pred EECCCCCC-CCCCCCCCCHHHHHHHHHHHhCCCCCCCCC--CCChHHHHHHHHHHHHH---hcCCCCCc----ccEEEeC
Confidence 34566632 34455778899999999988532 2322 112 11233344432 12111100 01112
Q ss_pred ChhhHHHHHHHhh-hcCCceeecCCCCcccHHHHHHHHhhhCCceEEE-c--ccccccCHHHHHHHHhccCcceeEeecc
Q 040341 86 SGDGLKNVYRSFI-SDHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIV-G--DDLLVTNPKRVEKAIKEKTCNALLLKVN 161 (251)
Q Consensus 86 s~~elid~~~~l~-~~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~iv-g--Ddl~vtn~~~i~~~i~~~a~n~ilIK~n 161 (251)
...+.+......+ +.=.-|.+++|-.. .|....+..|.++.-+ . ++-+--+++.++.++..+..-.++.-||
T Consensus 139 G~~~al~~~~~~l~~pGd~Vlv~~P~y~----~y~~~~~~~g~~~~~~~l~~~~~~~~d~~~l~~~~~~~~~~v~i~nP~ 214 (462)
T PLN02187 139 GCNQGIEIVFESLARPNANILLPRPGFP----HYDARAAYSGLEVRKFDLLPEKEWEIDLEGIEAIADENTVAMVVINPN 214 (462)
T ss_pred CHHHHHHHHHHHhcCCCCEEEEeCCCCc----cHHHHHHHcCCEEEEEeCccccCCccCHHHHHHhcCCCcEEEEEeCCC
Confidence 2456676665544 33237889999865 3544555555444322 2 1225567899988876655555666674
Q ss_pred c-ccc---HHHHHHHHHHHHHcCCcEEEec
Q 040341 162 Q-IGS---VTESIEAVKMSKRAGWGVMASH 187 (251)
Q Consensus 162 q-iGt---lte~l~~~~~a~~~g~~~ivs~ 187 (251)
- .|+ ..+..+++++|+++|+.+++-.
T Consensus 215 NPTG~v~s~e~l~~i~~~a~~~~i~iI~DE 244 (462)
T PLN02187 215 NPCGNVYSHDHLKKVAETARKLGIMVISDE 244 (462)
T ss_pred CCCCCccCHHHHHHHHHHHHHCCCEEEEec
Confidence 3 344 4567788899999997765543
No 366
>PRK00950 histidinol-phosphate aminotransferase; Validated
Probab=30.66 E-value=4e+02 Score=23.99 Aligned_cols=96 Identities=16% Similarity=0.120 Sum_probs=58.8
Q ss_pred hhhHHHHHHHhh-hcCCceeecCCCCcccHHHHHHHHhhhCCceEEE-cccccccCHHHHHHHHhccCcceeEe-ec-cc
Q 040341 87 GDGLKNVYRSFI-SDHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIV-GDDLLVTNPKRVEKAIKEKTCNALLL-KV-NQ 162 (251)
Q Consensus 87 ~~elid~~~~l~-~~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~iv-gDdl~vtn~~~i~~~i~~~a~n~ilI-K~-nq 162 (251)
..+++..+...+ +.-.-+.+++|- +..|....+..|-++..+ .|+-+.-+++.+++.+..+ +..+.+ -| |-
T Consensus 96 a~~~i~~~~~~~~~~gd~vlv~~p~----y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~v~~~~p~np 170 (361)
T PRK00950 96 MDEVIDTLMRTFIDPGDEVIIPTPT----FSYYEISAKAHGAKPVYAKREEDFSLDVDSVLNAITEK-TKVIFLCTPNNP 170 (361)
T ss_pred HHHHHHHHHHHhcCCCCEEEEcCCC----hHHHHHHHHHcCCEEEEeecCCCCCcCHHHHHHHhccC-CCEEEEeCCCCC
Confidence 356665554433 333468888984 445655556666555444 2332456789998887543 444444 45 44
Q ss_pred cccHHHHHHHHHHHHHcCCcEEEec
Q 040341 163 IGSVTESIEAVKMSKRAGWGVMASH 187 (251)
Q Consensus 163 iGtlte~l~~~~~a~~~g~~~ivs~ 187 (251)
.|++...-+..++|+.+|..+++-.
T Consensus 171 tG~~~~~~~l~~l~~~~~~~li~De 195 (361)
T PRK00950 171 TGNLIPEEDIRKILESTDALVFVDE 195 (361)
T ss_pred CCCCcCHHHHHHHHHHCCcEEEEEC
Confidence 6777766677888888887666544
No 367
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=30.58 E-value=3e+02 Score=25.78 Aligned_cols=77 Identities=17% Similarity=0.279 Sum_probs=43.2
Q ss_pred HHHHHhhhC-CceEEEcccccccC--HHHHHHHHhccCcceeEe-eccccccHHHHHHHHHHHHHcCCcEEEecCCCCCC
Q 040341 118 HAELTGKIG-RHVQIVGDDLLVTN--PKRVEKAIKEKTCNALLL-KVNQIGSVTESIEAVKMSKRAGWGVMASHRSGETE 193 (251)
Q Consensus 118 ~~~l~~~lg-~~~~ivgDdl~vtn--~~~i~~~i~~~a~n~ilI-K~nqiGtlte~l~~~~~a~~~g~~~ivs~rsgEt~ 193 (251)
...+.+++| .++.||.|.....+ .+++...++....+...+ .+..--++....++++.+++.+..++|+-.-|-.-
T Consensus 19 l~~~l~~~g~~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGsvi 98 (377)
T cd08188 19 AGRYARRLGAKKVLLVSDPGVIKAGWVDRVIESLEEAGLEYVVFSDVSPNPRDEEVMAGAELYLENGCDVIIAVGGGSPI 98 (377)
T ss_pred HHHHHHHcCCCeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCchHH
Confidence 333334444 46667766532222 355655554333333322 12222367777788888999999999988755554
Q ss_pred c
Q 040341 194 D 194 (251)
Q Consensus 194 d 194 (251)
|
T Consensus 99 D 99 (377)
T cd08188 99 D 99 (377)
T ss_pred H
Confidence 3
No 368
>PLN02242 methionine gamma-lyase
Probab=30.51 E-value=3e+02 Score=26.27 Aligned_cols=113 Identities=18% Similarity=0.152 Sum_probs=64.9
Q ss_pred HHHhhhcCCceeecCCCCcccHHHHHHHH-hhhCCceEEEcccccccCHHHHHHHHhccCcceeEee-c-cccccHHHHH
Q 040341 94 YRSFISDHPIVSIEDPFDQDDWEHHAELT-GKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK-V-NQIGSVTESI 170 (251)
Q Consensus 94 ~~~l~~~ypI~~IEDP~~e~D~~~~~~l~-~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK-~-nqiGtlte~l 170 (251)
+..++..-.-+.+.+|+...=...+..+. +..|-++..+ | ..+++.+++++..+....|.+- | |-.|.+...-
T Consensus 108 l~al~~~GD~Vl~~~~~Y~~~~~~~~~~~~~~~G~~~~~~--d--~~d~e~l~~~i~~~~tklV~lesp~NPtG~v~dl~ 183 (418)
T PLN02242 108 LLQLCSSGGHVVASNTLYGGTHALLAHFLPRKCNITTTFV--D--ITDLEAVKKAVVPGKTKVLYFESISNPTLTVADIP 183 (418)
T ss_pred HHHHhCCCCEEEEcCCcHHHHHHHHHHhhhhccCceEEEc--C--CCCHHHHHHhcCcCCCEEEEEecCCCCCCcccCHH
Confidence 33444444456677786532222222222 2244333222 2 2478999988865434555544 4 5578888888
Q ss_pred HHHHHHHHcCCcEEEecCCCCCCc---hhHhhhhhhcccCccc
Q 040341 171 EAVKMSKRAGWGVMASHRSGETED---TFIADLSVGLATGQIK 210 (251)
Q Consensus 171 ~~~~~a~~~g~~~ivs~rsgEt~d---~~iadLAva~~~~~ik 210 (251)
+++++|+++|+.++|-.--..-.- ..-+|+.|.+.+..+-
T Consensus 184 ~I~~la~~~gi~livDea~~~~~~~~~~~g~divv~S~SK~l~ 226 (418)
T PLN02242 184 ELARIAHEKGVTVVVDNTFAPMVLSPARLGADVVVHSISKFIS 226 (418)
T ss_pred HHHHHHHHhCCEEEEECCCCccCCCHHHcCCcEEEEeCccccC
Confidence 899999999998887654322111 1126777777766653
No 369
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=30.51 E-value=3.2e+02 Score=25.12 Aligned_cols=78 Identities=14% Similarity=0.239 Sum_probs=50.1
Q ss_pred cCCceeec-CCCCcc-cHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEe----------eccccccHH
Q 040341 100 DHPIVSIE-DPFDQD-DWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLL----------KVNQIGSVT 167 (251)
Q Consensus 100 ~ypI~~IE-DP~~e~-D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilI----------K~nqiGtlt 167 (251)
+|.++..| .|..+. ....|.-... |-+|.++-|-. + ...+..+.++.+++ =.|++||..
T Consensus 152 ~~~V~v~EsrP~~~G~~~~a~~L~~~--gI~vtlI~Dsa-~------~~~m~~~~vd~VlvGAd~v~~nG~v~nk~GT~~ 222 (303)
T TIGR00524 152 RIRVIACETRPRNQGSRLTAWELMQD--GIDVTLITDSM-A------AYFMQKGEIDAVIVGADRIARNGDVANKIGTYQ 222 (303)
T ss_pred ceEEEECCCCCccchHHHHHHHHHHC--CCCEEEEChhH-H------HHHccccCCCEEEEcccEEecCCCEeEhhhHHH
Confidence 46677777 888876 5555643333 44788887752 1 22233346777776 348888774
Q ss_pred HHHHHHHHHHHcCCcEEEecCCC
Q 040341 168 ESIEAVKMSKRAGWGVMASHRSG 190 (251)
Q Consensus 168 e~l~~~~~a~~~g~~~ivs~rsg 190 (251)
++-.|+.+|.+++|-+-+.
T Consensus 223 ----lA~~Ak~~~vPv~V~a~s~ 241 (303)
T TIGR00524 223 ----LAVLAKEFRIPFFVAAPLS 241 (303)
T ss_pred ----HHHHHHHhCCCEEEecccc
Confidence 4557899999999987543
No 370
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional
Probab=30.44 E-value=5e+02 Score=24.97 Aligned_cols=74 Identities=15% Similarity=0.335 Sum_probs=45.0
Q ss_pred eccccccHHHHHHHHHHHHHc--CCc----EEEecCCCCCCchhHh--hhhhhcccCcc-------ccC--------CCC
Q 040341 159 KVNQIGSVTESIEAVKMSKRA--GWG----VMASHRSGETEDTFIA--DLSVGLATGQI-------KTG--------APC 215 (251)
Q Consensus 159 K~nqiGtlte~l~~~~~a~~~--g~~----~ivs~rsgEt~d~~ia--dLAva~~~~~i-------k~G--------~~~ 215 (251)
.+|+-++..+.+++++.+++. ++. +|||. .|||+++|-. +++--++...+ .+| .+.
T Consensus 273 ~m~r~~~~~~~~~~i~~lr~~~~~i~i~t~~IvGf-PgET~edf~~tl~fi~e~~~d~~~~f~ysP~pGT~a~~~~~~v~ 351 (440)
T PRK14862 273 RMKRPASVEKTLERIKKWREICPDLTIRSTFIVGF-PGETEEDFQMLLDFLKEAQLDRVGCFKYSPVEGATANDLPDQVP 351 (440)
T ss_pred hcCCCCCHHHHHHHHHHHHHHCCCceecccEEEEC-CCCCHHHHHHHHHHHHHcCCCeeeeEeecCCCCCchhhCCCCCC
Confidence 355667889999999998886 332 25555 4999887644 33333322211 122 333
Q ss_pred chhHHHHhhHHHHHHHHh
Q 040341 216 RSERLAKYNQLLRIEEEL 233 (251)
Q Consensus 216 r~Er~aKyN~llrie~~l 233 (251)
..+....+.+|.++.+++
T Consensus 352 ~~~~~~r~~~l~~~~~~~ 369 (440)
T PRK14862 352 EEVKEERWARFMEVQQQI 369 (440)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445666777787776664
No 371
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=30.44 E-value=65 Score=32.63 Aligned_cols=53 Identities=13% Similarity=0.098 Sum_probs=39.4
Q ss_pred cceeEeeccccccHHHHHHHHHHHHHcCCcEEEecCCCCCCchhHhhhhhhcc
Q 040341 153 CNALLLKVNQIGSVTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLA 205 (251)
Q Consensus 153 ~n~ilIK~nqiGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d~~iadLAva~~ 205 (251)
.+.++|=++|-|.-.+++++++.|+++|..++.=....++.-...+|..+-+.
T Consensus 369 ~~~lvI~ISqSGeT~d~i~al~~ak~~Ga~~IaITn~~~S~La~~ad~~l~~~ 421 (640)
T PTZ00295 369 EDAGVIFISQSGETLDVVRALNLADELNLPKISVVNTVGSLIARSTDCGVYLN 421 (640)
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHHCCCCEEEEECCCCChhHHhcCEEEEeC
Confidence 35677778999999999999999999998876444445555555666554443
No 372
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=30.24 E-value=4.2e+02 Score=24.01 Aligned_cols=100 Identities=12% Similarity=0.056 Sum_probs=62.8
Q ss_pred cChhhHHHHHHHhhhcCC-----ceeecC-CCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEe
Q 040341 85 VSGDGLKNVYRSFISDHP-----IVSIED-PFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLL 158 (251)
Q Consensus 85 ~s~~elid~~~~l~~~yp-----I~~IED-P~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilI 158 (251)
++.++=++++.. +.+.+ |-.||= +|.+.|.+.-..+.++-.....|+.= .+.|.++++++++.+.-...+.
T Consensus 18 ~~~~~Kv~i~~~-L~~~G~~~~~v~~IE~~s~~~~d~~~v~~~~~~~~~~~~v~~~--~r~~~~die~A~~~g~~~v~i~ 94 (279)
T cd07947 18 YTVEQIVKIYDY-LHELGGGSGVIRQTEFFLYTEKDREAVEACLDRGYKFPEVTGW--IRANKEDLKLVKEMGLKETGIL 94 (279)
T ss_pred CCHHHHHHHHHH-HHHcCCCCCccceEEecCcChHHHHHHHHHHHcCCCCCEEEEE--ecCCHHHHHHHHHcCcCEEEEE
Confidence 388887787776 57778 777764 45677777776665442112345552 5789999999987654322211
Q ss_pred --------eccccccHHH----HHHHHHHHHHcCCcEEEec
Q 040341 159 --------KVNQIGSVTE----SIEAVKMSKRAGWGVMASH 187 (251)
Q Consensus 159 --------K~nqiGtlte----~l~~~~~a~~~g~~~ivs~ 187 (251)
+-|.=-|..| ..+++++|+++|..+-++-
T Consensus 95 ~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ 135 (279)
T cd07947 95 MSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHL 135 (279)
T ss_pred EcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 1111134444 5567889999999887776
No 373
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=30.23 E-value=4.1e+02 Score=23.96 Aligned_cols=97 Identities=21% Similarity=0.298 Sum_probs=53.2
Q ss_pred hhhHHHHHHHhhhcC---C-ceeecCCCCcccHHHHHHHHhhhCC-------ceEEE------cccccccCHHHHHH---
Q 040341 87 GDGLKNVYRSFISDH---P-IVSIEDPFDQDDWEHHAELTGKIGR-------HVQIV------GDDLLVTNPKRVEK--- 146 (251)
Q Consensus 87 ~~elid~~~~l~~~y---p-I~~IEDP~~e~D~~~~~~l~~~lg~-------~~~iv------gDdl~vtn~~~i~~--- 146 (251)
.+...+...++.+.+ | |++|-=+...+||...++..+..|- .||-. |-. ...+++.+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~-l~~~~~~~~~iv~ 161 (299)
T cd02940 83 LEYWLKEIRELKKDFPDKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAA-VGQDPELVEEICR 161 (299)
T ss_pred HHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchh-hccCHHHHHHHHH
Confidence 444445455544443 4 5566333344565555554443321 12211 111 1245555543
Q ss_pred HHhccCcceeEeeccccccHHHHHHHHHHHHHcCCcEEEe
Q 040341 147 AIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAGWGVMAS 186 (251)
Q Consensus 147 ~i~~~a~n~ilIK~nqiGtlte~l~~~~~a~~~g~~~ivs 186 (251)
++.....-.+.+|+.. .+++..++++.+.++|..-++.
T Consensus 162 ~v~~~~~~Pv~vKl~~--~~~~~~~~a~~~~~~Gadgi~~ 199 (299)
T cd02940 162 WVREAVKIPVIAKLTP--NITDIREIARAAKEGGADGVSA 199 (299)
T ss_pred HHHHhcCCCeEEECCC--CchhHHHHHHHHHHcCCCEEEE
Confidence 4444344579999864 5568889999999999887763
No 374
>PRK08354 putative aminotransferase; Provisional
Probab=30.15 E-value=4e+02 Score=23.76 Aligned_cols=91 Identities=7% Similarity=-0.007 Sum_probs=56.8
Q ss_pred hhhHHHHHHHhhhcCCceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeecc----c
Q 040341 87 GDGLKNVYRSFISDHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVN----Q 162 (251)
Q Consensus 87 ~~elid~~~~l~~~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~n----q 162 (251)
.++.+..+..++..-.-+.+++|-. ..|....+..|.++.-++ .+++.+++.+.. ..-.++.-|| +
T Consensus 63 ~~~al~~~~~~~~~gd~vlv~~P~y----~~~~~~~~~~g~~~~~~~-----~d~~~l~~~~~~-~~~vi~~~P~NPTG~ 132 (311)
T PRK08354 63 ITEALYLIGILALRDRKVIIPRHTY----GEYERVARFFAARIIKGP-----NDPEKLEELVER-NSVVFFCNPNNPDGK 132 (311)
T ss_pred HHHHHHHHHHhhCCCCeEEEeCCCc----HHHHHHHHHcCCEEeecC-----CCHHHHHHhhcC-CCEEEEecCCCCCCC
Confidence 4566666665554444788999965 567777777765553332 256778777653 3334455563 3
Q ss_pred cccHHHHHHHHHHHHHcCCcEEEec
Q 040341 163 IGSVTESIEAVKMSKRAGWGVMASH 187 (251)
Q Consensus 163 iGtlte~l~~~~~a~~~g~~~ivs~ 187 (251)
+=+..+..++++.|+++|.-+++-.
T Consensus 133 ~~~~~~l~~l~~~a~~~~~~li~De 157 (311)
T PRK08354 133 FYNFKELKPLLDAVEDRNALLILDE 157 (311)
T ss_pred ccCHHHHHHHHHHhhhcCcEEEEeC
Confidence 3345677788889999887665433
No 375
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=30.13 E-value=3.6e+02 Score=25.62 Aligned_cols=107 Identities=14% Similarity=0.242 Sum_probs=63.6
Q ss_pred cHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeecc---ccccHHHHHHHHH-HHHHcCCcEEEecCC
Q 040341 114 DWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVN---QIGSVTESIEAVK-MSKRAGWGVMASHRS 189 (251)
Q Consensus 114 D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~n---qiGtlte~l~~~~-~a~~~g~~~ivs~rs 189 (251)
.|+.-+++.+..+ .+|+.-+ |.++++++++++.| +++|.+--+ |.-+.-.+++++. +++..+..++++..-
T Consensus 224 ~w~~i~~ir~~~~--~pviiKg--V~~~eda~~a~~~G-~d~I~VSnhGGrqld~~~~~~~~L~ei~~~~~~~vi~dGGI 298 (361)
T cd04736 224 NWQDLRWLRDLWP--HKLLVKG--IVTAEDAKRCIELG-ADGVILSNHGGRQLDDAIAPIEALAEIVAATYKPVLIDSGI 298 (361)
T ss_pred CHHHHHHHHHhCC--CCEEEec--CCCHHHHHHHHHCC-cCEEEECCCCcCCCcCCccHHHHHHHHHHHhCCeEEEeCCC
Confidence 5788888888884 4555555 57999999999885 555554321 1111111233333 334457888888752
Q ss_pred CCCCchhHhhh--hhhcccCccccCCC-------CchhHHHHhhHHHHHH
Q 040341 190 GETEDTFIADL--SVGLATGQIKTGAP-------CRSERLAKYNQLLRIE 230 (251)
Q Consensus 190 gEt~d~~iadL--Ava~~~~~ik~G~~-------~r~Er~aKyN~llrie 230 (251)
.+. .|+ |+++|+..+-.|.| .+.+-+.++=++|+-|
T Consensus 299 -r~g----~Dv~KALaLGA~aV~iGr~~l~~la~~G~~gv~~~l~~l~~e 343 (361)
T cd04736 299 -RRG----SDIVKALALGANAVLLGRATLYGLAARGEAGVSEVLRLLKEE 343 (361)
T ss_pred -CCH----HHHHHHHHcCCCEEEECHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 222 333 55666666655543 4666777777776654
No 376
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=30.08 E-value=2.9e+02 Score=22.17 Aligned_cols=140 Identities=14% Similarity=0.177 Sum_probs=71.4
Q ss_pred cHHHHHHHHHHHHhcCCcc---ceeeeee---------hhhhcccccC--CcceeecCCCCCCCCCCccChhhHHHHHHH
Q 040341 31 SYEGFELLKTAIAKGGYIG---KIVIGMD---------VAASEFYDSK--DKTYDLNFKEENNDGSQKVSGDGLKNVYRS 96 (251)
Q Consensus 31 ~eeal~~i~~Ai~~aGy~~---kI~iglD---------~Aase~~~~~--~g~Y~l~~~~~~~d~~~~~s~~elid~~~~ 96 (251)
+|-.++.+..|+ +.|+.. +|.+--| +--++++..- +-.+.++.|.+. ..+++++.+.+
T Consensus 12 pent~~a~~~a~-~~g~~~iE~Dv~~tkDg~~vv~Hdi~tL~e~l~~~~~~~~i~leiK~~~-------~~~~~~~~l~~ 83 (189)
T cd08556 12 PENTLAAFRKAL-EAGADGVELDVQLTKDGVLVVIHDIPTLEEVLELVKGGVGLNIELKEPT-------RYPGLEAKVAE 83 (189)
T ss_pred CchHHHHHHHHH-HcCCCEEEEEeeEcCCCCEEEEcCCCCHHHHHHhcccCcEEEEEECCCC-------CchhHHHHHHH
Confidence 588888999999 677653 2322222 1223333221 224566655321 13466777777
Q ss_pred hhhcCCc--eeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeeccccccHHHHHHHHH
Q 040341 97 FISDHPI--VSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVK 174 (251)
Q Consensus 97 l~~~ypI--~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqiGtlte~l~~~~ 174 (251)
++++|+. -.+-.-|..+.+...+++...+ ++.++-+... .............++.+.+.-.. ..-+.++
T Consensus 84 ~i~~~~~~~~v~i~s~~~~~l~~~~~~~p~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~i~ 154 (189)
T cd08556 84 LLREYGLEERVVVSSFDHEALRALKELDPEV--PTGLLVDKPP--LDPLLAELARALGADAVNPHYKL-----LTPELVR 154 (189)
T ss_pred HHHHcCCcCCEEEEeCCHHHHHHHHHhCCCC--cEEEEeecCc--ccchhhhHHHhcCCeEEccChhh-----CCHHHHH
Confidence 7888862 1223334444554444444444 4555544321 11111111223344555554322 2347889
Q ss_pred HHHHcCCcEEEec
Q 040341 175 MSKRAGWGVMASH 187 (251)
Q Consensus 175 ~a~~~g~~~ivs~ 187 (251)
.++++|+.+++=.
T Consensus 155 ~~~~~g~~v~~wt 167 (189)
T cd08556 155 AAHAAGLKVYVWT 167 (189)
T ss_pred HHHHcCCEEEEEc
Confidence 9999999997743
No 377
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=29.97 E-value=2.6e+02 Score=26.22 Aligned_cols=119 Identities=15% Similarity=0.161 Sum_probs=71.0
Q ss_pred hhhHHHHHH-HhhhcCCceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEee-c-ccc
Q 040341 87 GDGLKNVYR-SFISDHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK-V-NQI 163 (251)
Q Consensus 87 ~~elid~~~-~l~~~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK-~-nqi 163 (251)
..+.+.... .++..=.-+.+.+|....-+.-|..+....+-++..+ | ..+++.+++++..+ ...|.|- | |-.
T Consensus 75 g~~Ai~~~l~all~~GD~Vl~~~p~y~~~~~~~~~~~~~~~~~v~~~--d--~~d~~~l~~ai~~~-tklV~l~~p~NPt 149 (382)
T TIGR02080 75 GMSAIHLVTTALLGPDDLLVAPHDCYGGTYRLLNALAKKGCFRVLFV--D--QGDEQALRAALAQK-PKLVLIETPSNPL 149 (382)
T ss_pred HHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhcCeEEEEE--C--CCCHHHHHHhcCcC-ceEEEEECCCCCC
Confidence 344444333 3334333566677777655666666655543344433 3 24788898888654 4455442 4 456
Q ss_pred ccHHHHHHHHHHHHHcCCcEEEecCCCCC--Cc--hhHhhhhhhcccCccc
Q 040341 164 GSVTESIEAVKMSKRAGWGVMASHRSGET--ED--TFIADLSVGLATGQIK 210 (251)
Q Consensus 164 Gtlte~l~~~~~a~~~g~~~ivs~rsgEt--~d--~~iadLAva~~~~~ik 210 (251)
|.+...-+++++|+++|..++|-.--... .. ..-+|+.+.+...++-
T Consensus 150 G~~~dl~~I~~la~~~g~~vvvD~a~~~~~~~~pl~~gaDivv~S~sK~l~ 200 (382)
T TIGR02080 150 LRVVDIAKICHLAKAVGAVVVVDNTFLSPALQNPLALGADLVLHSCTKYLN 200 (382)
T ss_pred CEecCHHHHHHHHHHcCCEEEEECCCcccccCCchhhCCCEEEeecceecc
Confidence 77777778889999999888776542211 11 2246778777766654
No 378
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=29.96 E-value=4.9e+02 Score=24.69 Aligned_cols=93 Identities=10% Similarity=0.147 Sum_probs=55.6
Q ss_pred cHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeeccc-------------cccHHHHHHHHHHHHHc-
Q 040341 114 DWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQ-------------IGSVTESIEAVKMSKRA- 179 (251)
Q Consensus 114 D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nq-------------iGtlte~l~~~~~a~~~- 179 (251)
||..+.++.++. .++|++-+ |.+++..+++++ -.|++|.+=... +.+++...++++.++++
T Consensus 175 ~~~~i~~~ik~~--~ipVIaG~--V~t~e~A~~l~~-aGAD~V~VG~G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l 249 (368)
T PRK08649 175 EPLNLKEFIYEL--DVPVIVGG--CVTYTTALHLMR-TGAAGVLVGIGPGAACTSRGVLGIGVPMATAIADVAAARRDYL 249 (368)
T ss_pred CHHHHHHHHHHC--CCCEEEeC--CCCHHHHHHHHH-cCCCEEEECCCCCcCCCCcccCCCCcCHHHHHHHHHHHHHHhh
Confidence 789999998887 57777632 678999999887 456666442110 11333444444444433
Q ss_pred ------CCcEEEecCCCCCCchhHhhhhhhcccCccccCCC
Q 040341 180 ------GWGVMASHRSGETEDTFIADLSVGLATGQIKTGAP 214 (251)
Q Consensus 180 ------g~~~ivs~rsgEt~d~~iadLAva~~~~~ik~G~~ 214 (251)
++++|.+..-... .+... |+++|+..+..|.+
T Consensus 250 ~~~~~~~vpVIAdGGI~~~-~diak--AlalGAd~Vm~Gs~ 287 (368)
T PRK08649 250 DETGGRYVHVIADGGIGTS-GDIAK--AIACGADAVMLGSP 287 (368)
T ss_pred hhhcCCCCeEEEeCCCCCH-HHHHH--HHHcCCCeecccch
Confidence 5777776653333 22222 34467777777765
No 379
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=29.95 E-value=3.7e+02 Score=23.32 Aligned_cols=69 Identities=14% Similarity=0.089 Sum_probs=45.8
Q ss_pred cChhhHHHHHHHhhhcCC--ceeecC---CCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEe
Q 040341 85 VSGDGLKNVYRSFISDHP--IVSIED---PFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLL 158 (251)
Q Consensus 85 ~s~~elid~~~~l~~~yp--I~~IED---P~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilI 158 (251)
.++++ +..|....+.|+ ++++|+ ....-+.+-.+++.+.+.-.+ ++|-- +++++++++.++.+ ++.+++
T Consensus 131 ~~~e~-~~~~a~aa~~~G~~~i~Le~~sGa~~~v~~e~i~~Vk~~~~~Pv-~vGGG--Irs~e~a~~l~~~G-AD~VVV 204 (205)
T TIGR01769 131 NKPEI-AAAYCLAAKYFGMKWVYLEAGSGASYPVNPETISLVKKASGIPL-IVGGG--IRSPEIAYEIVLAG-ADAIVT 204 (205)
T ss_pred CCHHH-HHHHHHHHHHcCCCEEEEEcCCCCCCCCCHHHHHHHHHhhCCCE-EEeCC--CCCHHHHHHHHHcC-CCEEEe
Confidence 56666 556776667654 889998 344456777777777774334 34443 68999999887766 455543
No 380
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=29.85 E-value=2.4e+02 Score=25.87 Aligned_cols=65 Identities=12% Similarity=0.210 Sum_probs=0.0
Q ss_pred HHHHHHHhhhCCceEEE--cccccccCHHHHHHHHhccCcceeEeecccc---ccHHHHHHHHHHHHHcCCcE
Q 040341 116 EHHAELTGKIGRHVQIV--GDDLLVTNPKRVEKAIKEKTCNALLLKVNQI---GSVTESIEAVKMSKRAGWGV 183 (251)
Q Consensus 116 ~~~~~l~~~lg~~~~iv--gDdl~vtn~~~i~~~i~~~a~n~ilIK~nqi---Gtlte~l~~~~~a~~~g~~~ 183 (251)
.....+.++....+||+ .|. .++.+.++++++.|. ++|.+--++. --+..|.+++++|+..|+.|
T Consensus 65 ~~~~~~A~~~~~~vPV~lHLDH--g~~~e~i~~ai~~Gf-tSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~V 134 (286)
T PRK08610 65 KMVEGLMHDLNITIPVAIHLDH--GSSFEKCKEAIDAGF-TSVMIDASHSPFEENVATTKKVVEYAHEKGVSV 134 (286)
T ss_pred HHHHHHHHHcCCCCCEEEECCC--CCCHHHHHHHHHcCC-CEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEE
No 381
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=29.76 E-value=80 Score=22.09 Aligned_cols=33 Identities=21% Similarity=0.365 Sum_probs=25.2
Q ss_pred cceeEeeccccccHHHHHHHHHHHHHcCCcEEE
Q 040341 153 CNALLLKVNQIGSVTESIEAVKMSKRAGWGVMA 185 (251)
Q Consensus 153 ~n~ilIK~nqiGtlte~l~~~~~a~~~g~~~iv 185 (251)
.+-++|=.++-|.-.+++++++.|+++|.+++.
T Consensus 47 ~~d~~i~iS~sg~t~~~~~~~~~a~~~g~~ii~ 79 (87)
T cd04795 47 KGDVVIALSYSGRTEELLAALEIAKELGIPVIA 79 (87)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHcCCeEEE
Confidence 334455567778888999999999999988743
No 382
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=29.76 E-value=1.6e+02 Score=31.44 Aligned_cols=100 Identities=22% Similarity=0.296 Sum_probs=58.6
Q ss_pred CceeecCCCCcccHHHHHHHHhhhCCceEEE-cccccccCHHHHHHHHhccCcceeEe--------------------e-
Q 040341 102 PIVSIEDPFDQDDWEHHAELTGKIGRHVQIV-GDDLLVTNPKRVEKAIKEKTCNALLL--------------------K- 159 (251)
Q Consensus 102 pI~~IEDP~~e~D~~~~~~l~~~lg~~~~iv-gDdl~vtn~~~i~~~i~~~a~n~ilI--------------------K- 159 (251)
+++.++||+.++=-+.-++|++. |-++-++ ||. ..+...+.+.+.....+...+ .
T Consensus 572 Gli~~~Dplr~~~~~aI~~l~~a-GI~v~miTGD~--~~tA~~iA~~~GI~~~~~~vi~G~~~~~l~~~el~~~i~~~~V 648 (941)
T TIGR01517 572 GVVGIKDPLRPGVREAVQECQRA-GITVRMVTGDN--IDTAKAIARNCGILTFGGLAMEGKEFRRLVYEEMDPILPKLRV 648 (941)
T ss_pred EEeeccCCCchhHHHHHHHHHHC-CCEEEEECCCC--hHHHHHHHHHcCCCCCCceEeeHHHhhhCCHHHHHHHhccCeE
Confidence 46788999999888888888654 5566555 665 233444443222211111111 0
Q ss_pred ccccccHHHHHHHHHHHHHcCCcE-EEecCCCCCCchhHhhhhhhcc
Q 040341 160 VNQIGSVTESIEAVKMSKRAGWGV-MASHRSGETEDTFIADLSVGLA 205 (251)
Q Consensus 160 ~nqiGtlte~l~~~~~a~~~g~~~-ivs~rsgEt~d~~iadLAva~~ 205 (251)
-.|+ +..+=.++++..|+.|..| |+|...-+..-=.-||+.+|++
T Consensus 649 far~-sPe~K~~iV~~lq~~g~vVam~GDGvNDapALk~AdVGIAmg 694 (941)
T TIGR01517 649 LARS-SPLDKQLLVLMLKDMGEVVAVTGDGTNDAPALKLADVGFSMG 694 (941)
T ss_pred EEEC-CHHHHHHHHHHHHHCCCEEEEECCCCchHHHHHhCCcceecC
Confidence 0232 4556677888889988754 6666544444445578877765
No 383
>PF01876 RNase_P_p30: RNase P subunit p30; InterPro: IPR002738 Members of this protein family are part of the ribonuclease P complex () that takes part in endonucleolytic cleavage of RNA, removing 5'-extra-nucleotide from tRNA precursor. This process is essential for tRNA processing.; GO: 0004540 ribonuclease activity, 0008033 tRNA processing; PDB: 1V77_A 2CZV_A.
Probab=29.70 E-value=2.9e+02 Score=22.14 Aligned_cols=93 Identities=16% Similarity=0.213 Sum_probs=53.1
Q ss_pred hHHHHHHHhhhcCCceeecCCCCcccHHHHHHHHhhhCCceEEEcccc-----cccCHHHHHHHHhccCcceeEeec---
Q 040341 89 GLKNVYRSFISDHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDL-----LVTNPKRVEKAIKEKTCNALLLKV--- 160 (251)
Q Consensus 89 elid~~~~l~~~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl-----~vtn~~~i~~~i~~~a~n~ilIK~--- 160 (251)
++.........+|.|++++ |. +-+.+...+... +|.|+-=|. +.-+...++.|++.+..=-+.+.|
T Consensus 13 ~~~~~~~~~~~~~divav~-p~---~~~~~~~a~~~~--~vDiIt~d~~~~~~~~~~~~~~~~a~~~gi~~EI~~~~~l~ 86 (150)
T PF01876_consen 13 SLRRSLSKFRKKYDIVAVR-PG---SEKAFRAACSDP--RVDIITFDLTERLPFYIKRKQARLAIERGIFFEISYSPLLR 86 (150)
T ss_dssp HHHHHHHHTTT--SEEEEE--S----HHHHHHHHHTT----SEEE-TTTTSSS-S--HHHHHHHHHHT-EEEEESHHHHH
T ss_pred HHHHHhhcccCCceEEEEE-cC---CHHHHHHHHhcC--CCCEEEeCcccccccccCHHHHHHHHHCCEEEEEEehHhhc
Confidence 3456677777889999998 54 446677777776 566654332 233556677777776544444332
Q ss_pred ----cccccHHHHHHHHHHHHHcCCcEEEecCC
Q 040341 161 ----NQIGSVTESIEAVKMSKRAGWGVMASHRS 189 (251)
Q Consensus 161 ----nqiGtlte~l~~~~~a~~~g~~~ivs~rs 189 (251)
++...++.+.+.+++++. .++++|+..
T Consensus 87 ~~~~~r~~~~~~~~~l~~~~~~--~~iiiSSgA 117 (150)
T PF01876_consen 87 SDGSNRRNFISNARRLIRLTKK--KNIIISSGA 117 (150)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHH----EEEE---
T ss_pred cCcHHHHHHHHHHHHHHHHhCC--CCEEEEcCC
Confidence 345678888899999988 888999863
No 384
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=29.64 E-value=4e+02 Score=23.55 Aligned_cols=113 Identities=21% Similarity=0.284 Sum_probs=66.1
Q ss_pred eehhhhcccccCCcceeecCCCCCCCCCCccChhhHHHHHHHhhhcCC-ceee--c--CCC-----CcccHHHHHHHHhh
Q 040341 55 MDVAASEFYDSKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHP-IVSI--E--DPF-----DQDDWEHHAELTGK 124 (251)
Q Consensus 55 lD~Aase~~~~~~g~Y~l~~~~~~~d~~~~~s~~elid~~~~l~~~yp-I~~I--E--DP~-----~e~D~~~~~~l~~~ 124 (251)
+++....||+. ++..+.++.++.-.++++.=. |+=| | -|. .++.++....+-+.
T Consensus 7 lN~t~dsf~~~----------------~~~~~~~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~ 70 (258)
T cd00423 7 LNVTPDSFSDG----------------GKFLSLDKALEHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRA 70 (258)
T ss_pred ecCCCCchhhc----------------cccCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHH
Confidence 66666666653 233566777777777766422 3322 1 122 12333333333344
Q ss_pred hCC--ceEEEcccccccCHHHHHHHHhccCcceeEeeccccccHHHHHHHHHHHHHcCCcEEEecCCCC
Q 040341 125 IGR--HVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAGWGVMASHRSGE 191 (251)
Q Consensus 125 lg~--~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqiGtlte~l~~~~~a~~~g~~~ivs~rsgE 191 (251)
+.+ +++|+-|- ++++-++.|++.+ ... +|-+.+...--+++++++++|..+++-|..+.
T Consensus 71 l~~~~~~piSIDT---~~~~v~~aaL~~g-~~i----INdis~~~~~~~~~~l~~~~~~~vV~m~~~~~ 131 (258)
T cd00423 71 LAGEPDVPISVDT---FNAEVAEAALKAG-ADI----INDVSGGRGDPEMAPLAAEYGAPVVLMHMDGT 131 (258)
T ss_pred HHhcCCCeEEEeC---CcHHHHHHHHHhC-CCE----EEeCCCCCCChHHHHHHHHcCCCEEEECcCCC
Confidence 421 57888884 6899999999876 222 23332322113567889999999999997654
No 385
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=29.62 E-value=2.7e+02 Score=25.49 Aligned_cols=85 Identities=12% Similarity=0.155 Sum_probs=52.5
Q ss_pred CCcHHHHHHHHHHHHhcCCccc-eeeeeehhhhcccccCCcce-eecCCCCCCCCCCccChhhHHHHHHHhhhcCCceee
Q 040341 29 QESYEGFELLKTAIAKGGYIGK-IVIGMDVAASEFYDSKDKTY-DLNFKEENNDGSQKVSGDGLKNVYRSFISDHPIVSI 106 (251)
Q Consensus 29 ~~~eeal~~i~~Ai~~aGy~~k-I~iglD~Aase~~~~~~g~Y-~l~~~~~~~d~~~~~s~~elid~~~~l~~~ypI~~I 106 (251)
.+.++.++++.+ +++.|+--+ |.+.+|--.... .++.| ++.+ |....-++.+|++.+++ ..+.++.+
T Consensus 21 ~~~~~v~~~~~~-~~~~~iP~d~i~lD~~w~~~~~---~~~~~~~f~w-----d~~~FPdp~~mi~~L~~--~G~k~~~~ 89 (317)
T cd06598 21 RNWQEVDDTIKT-LREKDFPLDAAILDLYWFGKDI---DKGHMGNLDW-----DRKAFPDPAGMIADLAK--KGVKTIVI 89 (317)
T ss_pred CCHHHHHHHHHH-HHHhCCCceEEEEechhhcCcc---cCCceeeeEe-----ccccCCCHHHHHHHHHH--cCCcEEEE
Confidence 456777777777 667887643 444443321100 01223 3332 13456678899888877 46778999
Q ss_pred cCCCCcccHHHHHHHHhh
Q 040341 107 EDPFDQDDWEHHAELTGK 124 (251)
Q Consensus 107 EDP~~e~D~~~~~~l~~~ 124 (251)
.+|+-..|-..+.++.++
T Consensus 90 v~P~v~~~~~~y~e~~~~ 107 (317)
T cd06598 90 TEPFVLKNSKNWGEAVKA 107 (317)
T ss_pred EcCcccCCchhHHHHHhC
Confidence 999977776777777664
No 386
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=29.53 E-value=1.5e+02 Score=27.24 Aligned_cols=34 Identities=26% Similarity=0.251 Sum_probs=26.7
Q ss_pred ccHHHHHHHHHHHHHcCCcE----EEecCCCCCCchhHhh
Q 040341 164 GSVTESIEAVKMSKRAGWGV----MASHRSGETEDTFIAD 199 (251)
Q Consensus 164 Gtlte~l~~~~~a~~~g~~~----ivs~rsgEt~d~~iad 199 (251)
.+..+.+++++.|++.|+.+ |+|+ |||.++.+-+
T Consensus 178 ~s~~~~l~~i~~a~~~Gi~v~~~~iiGl--gEt~ed~~~~ 215 (340)
T TIGR03699 178 ISSEEWLEVMETAHKLGLPTTATMMFGH--VETLEDRIEH 215 (340)
T ss_pred CCHHHHHHHHHHHHHcCCCccceeEeeC--CCCHHHHHHH
Confidence 48888999999999999987 5664 7886665444
No 387
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=29.53 E-value=3.8e+02 Score=25.96 Aligned_cols=43 Identities=21% Similarity=0.276 Sum_probs=31.2
Q ss_pred ccccccHHHHHHHHHHHHHc--CCc----EEEecCCCCCCchhHhhhhhh
Q 040341 160 VNQIGSVTESIEAVKMSKRA--GWG----VMASHRSGETEDTFIADLSVG 203 (251)
Q Consensus 160 ~nqiGtlte~l~~~~~a~~~--g~~----~ivs~rsgEt~d~~iadLAva 203 (251)
+++-.++.+.+++++.+++. |+. +|+|. .|||+++|...+...
T Consensus 283 m~R~~t~e~~~~~i~~lr~~~pgi~i~~d~IvG~-PgET~ed~~~ti~~l 331 (459)
T PRK14338 283 MRRGYTVARYRELIARIREAIPDVSLTTDIIVGH-PGETEEQFQRTYDLL 331 (459)
T ss_pred ccCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEEC-CCCCHHHHHHHHHHH
Confidence 45556899999999999988 655 35666 599988875444443
No 388
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=29.50 E-value=1.7e+02 Score=26.67 Aligned_cols=60 Identities=10% Similarity=0.173 Sum_probs=0.0
Q ss_pred HHHHhhhCCceEEE--cccccccCHHHHHHHHhccCcceeEeecccc---ccHHHHHHHHHHHHHcCCcE
Q 040341 119 AELTGKIGRHVQIV--GDDLLVTNPKRVEKAIKEKTCNALLLKVNQI---GSVTESIEAVKMSKRAGWGV 183 (251)
Q Consensus 119 ~~l~~~lg~~~~iv--gDdl~vtn~~~i~~~i~~~a~n~ilIK~nqi---Gtlte~l~~~~~a~~~g~~~ 183 (251)
..+.++. ++||+ +|. .++.+.+.++++.|. ++|++--++. =-+-.|.+++++|+..|+.|
T Consensus 65 ~~~a~~~--~VPValHLDH--g~~~e~i~~ai~~GF-tSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gv~V 129 (282)
T TIGR01858 65 SAASTTY--NMPLALHLDH--HESLDDIRQKVHAGV-RSAMIDGSHFPFAQNVKLVKEVVDFCHRQDCSV 129 (282)
T ss_pred HHHHHHC--CCCEEEECCC--CCCHHHHHHHHHcCC-CEEeecCCCCCHHHHHHHHHHHHHHHHHcCCeE
No 389
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=29.46 E-value=3.8e+02 Score=23.30 Aligned_cols=151 Identities=17% Similarity=0.199 Sum_probs=79.9
Q ss_pred CCCcHHHHHHHHHHHHhcCCccceeeeeehhhh-----------ccccc---CCcceeecCCC-CCCCCCCccChhhHHH
Q 040341 28 IQESYEGFELLKTAIAKGGYIGKIVIGMDVAAS-----------EFYDS---KDKTYDLNFKE-ENNDGSQKVSGDGLKN 92 (251)
Q Consensus 28 ~~~~eeal~~i~~Ai~~aGy~~kI~iglD~Aas-----------e~~~~---~~g~Y~l~~~~-~~~d~~~~~s~~elid 92 (251)
-.+.+++.++|..|+ +.|++- +|+|.. ++... ....|.+..|. ........++++.+.+
T Consensus 13 ~~~~~~~~~~l~~a~-~~Gin~-----~DtA~~Y~~g~sE~~lg~~l~~~~~~r~~~~i~tK~~~~~~~~~~~~~~~i~~ 86 (283)
T PF00248_consen 13 RVSEEEAEAILRRAL-EAGINF-----FDTADSYGNGRSERILGRALRKSRVPRDDIFISTKVYGDGKPEPDYSPDSIRE 86 (283)
T ss_dssp TSTHHHHHHHHHHHH-HTT--E-----EEECGGGGGGTHHHHHHHHHHHTSSTGGGSEEEEEEESSSSTGGGSSHHHHHH
T ss_pred CCCHHHHHHHHHHHH-HcCCCe-----ecccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 346799999999999 788862 333321 11111 12344443332 0111234677777777
Q ss_pred HHHHhhh----cC-CceeecCCCCccc--HHHHHHHHhhh-CCceEEEcccccccCHHHHHHHHhcc--CcceeEeeccc
Q 040341 93 VYRSFIS----DH-PIVSIEDPFDQDD--WEHHAELTGKI-GRHVQIVGDDLLVTNPKRVEKAIKEK--TCNALLLKVNQ 162 (251)
Q Consensus 93 ~~~~l~~----~y-pI~~IEDP~~e~D--~~~~~~l~~~l-g~~~~ivgDdl~vtn~~~i~~~i~~~--a~n~ilIK~nq 162 (251)
.+.+-++ +| .+++|-.|-...+ -+.|..|.+-. -.++--+| ++..+++.++.+...+ ....+-+..|-
T Consensus 87 ~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~l~~~G~ir~iG--vs~~~~~~l~~~~~~~~~~~~~~q~~~n~ 164 (283)
T PF00248_consen 87 SLERSLERLGTDYIDLLLLHWPDPSEDALEEVWEALEELKKEGKIRHIG--VSNFSPEQLEAALKIGSIPPDVVQINYNL 164 (283)
T ss_dssp HHHHHHHHHTSSSEEEEEESSSSTTSSHHHHHHHHHHHHHHTTSEEEEE--EES--HHHHHHHHTCTSS-ESEEEEE-BT
T ss_pred ccccccccccccchhccccccccccccccchhhhhhhhccccccccccc--ccccccccccccccccccccccccccccc
Confidence 6666555 33 3888888877665 34555554332 11555555 2444688888873332 23333333333
Q ss_pred cccHHHHHHHHHHHHHcCCcEEEec
Q 040341 163 IGSVTESIEAVKMSKRAGWGVMASH 187 (251)
Q Consensus 163 iGtlte~l~~~~~a~~~g~~~ivs~ 187 (251)
. .-..--.+++.|+++|+.++.-.
T Consensus 165 ~-~~~~~~~l~~~~~~~gi~v~a~~ 188 (283)
T PF00248_consen 165 L-NRREEEGLLEFCREHGIGVIAYS 188 (283)
T ss_dssp T-BHBGGHHHHHHHHHTT-EEEEES
T ss_pred c-ccccccccccccccccccccccc
Confidence 2 22344467778999999998655
No 390
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=29.44 E-value=1.5e+02 Score=27.10 Aligned_cols=41 Identities=10% Similarity=0.224 Sum_probs=28.5
Q ss_pred cHHHHHHHHHHHHHcCCcEEEecCCCCCCchhHhhhhhhcccCccccCCCCc
Q 040341 165 SVTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCR 216 (251)
Q Consensus 165 tlte~l~~~~~a~~~g~~~ivs~rsgEt~d~~iadLAva~~~~~ik~G~~~r 216 (251)
++.|+..+++.|. .+||. ||-..|||.|++..-+-.=+|+.
T Consensus 251 sL~el~ali~~a~-----l~I~n------DTGp~HlAaA~g~P~valfGpt~ 291 (348)
T PRK10916 251 QLEQAVILIAACK-----AIVTN------DSGLMHVAAALNRPLVALYGPSS 291 (348)
T ss_pred CHHHHHHHHHhCC-----EEEec------CChHHHHHHHhCCCEEEEECCCC
Confidence 6888877776654 67765 56678999999987764333443
No 391
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=29.31 E-value=4.5e+02 Score=24.10 Aligned_cols=146 Identities=15% Similarity=0.232 Sum_probs=83.1
Q ss_pred CCCCCCCCCcccccCCCCCcHHHHHHHHHHHHhcCCccceeeeeehhhhccccc--CCcceeecCCCCCCCCCCccChhh
Q 040341 12 GQDATNVGDEGGFAPNIQESYEGFELLKTAIAKGGYIGKIVIGMDVAASEFYDS--KDKTYDLNFKEENNDGSQKVSGDG 89 (251)
Q Consensus 12 g~~~~~vgdeGGfap~~~~~eeal~~i~~Ai~~aGy~~kI~iglD~Aase~~~~--~~g~Y~l~~~~~~~d~~~~~s~~e 89 (251)
|....-|.|-| .|.+.+| -.++|..|. ++|++-.+-+|-.....-+.-. ....|-+.=..| . .+.+
T Consensus 77 g~~valVSDAG--~P~ISDP--G~~LV~~a~-~~gi~V~~lPG~sA~~tAL~~SGl~~~~F~F~GFLP----~---k~~~ 144 (275)
T COG0313 77 GKSVALVSDAG--TPLISDP--GYELVRAAR-EAGIRVVPLPGPSALITALSASGLPSQRFLFEGFLP----R---KSKE 144 (275)
T ss_pred CCeEEEEecCC--CCcccCc--cHHHHHHHH-HcCCcEEecCCccHHHHHHHHcCCCCCCeeEeccCC----C---CccH
Confidence 44667788888 6888754 456677777 7898755555554422222111 013453321121 1 1223
Q ss_pred HHHHHHHhhhcCC-ceeecCCCCcccHHHHHHHHhhhC-CceEEEcccccccCHHHHHHHHhccCcceeEeeccccccHH
Q 040341 90 LKNVYRSFISDHP-IVSIEDPFDQDDWEHHAELTGKIG-RHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVT 167 (251)
Q Consensus 90 lid~~~~l~~~yp-I~~IEDP~~e~D~~~~~~l~~~lg-~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqiGtlt 167 (251)
-.+.++.|..+-. ++++|-|.+- .+....+.+.+| ++-.+++-||+-+.- . -+.|+++
T Consensus 145 R~~~l~~l~~~~~t~IfyEsphRl--~~tL~d~~~~~g~~r~v~vaRELTK~~E-e-----------------~~~g~~~ 204 (275)
T COG0313 145 RRKRLEALANEPRTLIFYESPHRL--LATLEDIVEVLGSDREVVVARELTKLFE-E-----------------IYRGTLS 204 (275)
T ss_pred HHHHHHHHHhcCCeEEEEecchhH--HHHHHHHHHHcCCCceEEEEeecccchh-h-----------------eecccHH
Confidence 3456666544333 9999999874 467788888888 666667888641110 0 1246888
Q ss_pred HHHHHHHHH-HHcCCcEEEecCC
Q 040341 168 ESIEAVKMS-KRAGWGVMASHRS 189 (251)
Q Consensus 168 e~l~~~~~a-~~~g~~~ivs~rs 189 (251)
|.++-..-- .+--+-++|+...
T Consensus 205 e~~~~~~~~~~KGE~vlvv~~~~ 227 (275)
T COG0313 205 ELIEWLEEDTLKGEFVLVVEGKN 227 (275)
T ss_pred HHHHHhhhcCCcccEEEEEeCCc
Confidence 877666544 3334445665533
No 392
>PRK05968 hypothetical protein; Provisional
Probab=29.31 E-value=3.6e+02 Score=25.26 Aligned_cols=101 Identities=18% Similarity=0.205 Sum_probs=62.3
Q ss_pred eeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEee--ccccccHHHHHHHHHHHHHcCC
Q 040341 104 VSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK--VNQIGSVTESIEAVKMSKRAGW 181 (251)
Q Consensus 104 ~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK--~nqiGtlte~l~~~~~a~~~g~ 181 (251)
+.+.+|....-+..|....+..|-++..+ | ..+++.+++++. ....|.|- .|-++.+.+.-+++++|+++|+
T Consensus 105 Vl~~~~~y~~t~~~~~~~~~~~G~~v~~v-d---~~d~~~l~~~i~--~tklV~ie~pt~~~~~~~dl~~i~~la~~~gi 178 (389)
T PRK05968 105 IVAVRHVYPDAFRLFETILKRMGVEVDYV-D---GRDEEAVAKALP--GAKLLYLESPTSWVFELQDVAALAALAKRHGV 178 (389)
T ss_pred EEEeCCCchHHHHHHHHHHHHcCceEEEe-C---CCCHHHHHHhcc--cCCEEEEECCCCCCCcHHHHHHHHHHHHHcCC
Confidence 44445655555666777767776555444 2 247888888763 23444443 3567788899999999999999
Q ss_pred cEEEecCCCCC--C--chhHhhhhhhcccCccc
Q 040341 182 GVMASHRSGET--E--DTFIADLSVGLATGQIK 210 (251)
Q Consensus 182 ~~ivs~rsgEt--~--d~~iadLAva~~~~~ik 210 (251)
.++|-.--... . ...=+|+.+-+...++-
T Consensus 179 ~vivD~a~a~~~~~~p~~~g~Divv~S~tK~l~ 211 (389)
T PRK05968 179 VTMIDNSWASPVFQRPITLGVDLVIHSASKYLG 211 (389)
T ss_pred EEEEECCCcchhccCchhcCCcEEEeecccccc
Confidence 88886632111 1 11225777666555554
No 393
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A.
Probab=29.27 E-value=1.7e+02 Score=27.84 Aligned_cols=98 Identities=18% Similarity=0.233 Sum_probs=59.7
Q ss_pred HHHHhhhC-CceEEEccccccc---CHHHHHHHHhccCcceeEeeccccccHHHHHHHHHHHHHcCCcEEEecCCCCCCc
Q 040341 119 AELTGKIG-RHVQIVGDDLLVT---NPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAGWGVMASHRSGETED 194 (251)
Q Consensus 119 ~~l~~~lg-~~~~ivgDdl~vt---n~~~i~~~i~~~a~n~ilIK~nqiGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d 194 (251)
..+.++.| .++.+||-| ||- +=+.++..++......+-=+---.|. |+.-.+++-.++.+=.+++|.-.|++.-
T Consensus 126 ~~~~~~~G~~r~~lvGSd-Yv~pre~Nri~r~~l~~~GgevvgE~Y~plg~-td~~~ii~~I~~~~Pd~V~stlvG~s~~ 203 (363)
T PF13433_consen 126 DYLLENFGAKRFYLVGSD-YVYPRESNRIIRDLLEARGGEVVGERYLPLGA-TDFDPIIAEIKAAKPDFVFSTLVGDSNV 203 (363)
T ss_dssp HHHHHHS--SEEEEEEES-SHHHHHHHHHHHHHHHHTT-EEEEEEEE-S-H-HHHHHHHHHHHHHT-SEEEEE--TTCHH
T ss_pred HHHHhccCCceEEEecCC-ccchHHHHHHHHHHHHHcCCEEEEEEEecCCc-hhHHHHHHHHHhhCCCEEEEeCcCCcHH
Confidence 44566778 899999999 663 22334444554444433333223444 8888888888888999999999999999
Q ss_pred hhHhhhh-hhcccCccccCCCCchh
Q 040341 195 TFIADLS-VGLATGQIKTGAPCRSE 218 (251)
Q Consensus 195 ~~iadLA-va~~~~~ik~G~~~r~E 218 (251)
.|.--++ .|+.+..+-+-+.+-+|
T Consensus 204 aF~r~~~~aG~~~~~~Pi~S~~~~E 228 (363)
T PF13433_consen 204 AFYRAYAAAGLDPERIPIASLSTSE 228 (363)
T ss_dssp HHHHHHHHHH-SSS---EEESS--H
T ss_pred HHHHHHHHcCCCcccCeEEEEecCH
Confidence 9988887 56666667777776666
No 394
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=29.14 E-value=5e+02 Score=24.58 Aligned_cols=121 Identities=10% Similarity=0.159 Sum_probs=76.6
Q ss_pred HHHHHHhhhc-CCceee--cCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeec--cc---
Q 040341 91 KNVYRSFISD-HPIVSI--EDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKV--NQ--- 162 (251)
Q Consensus 91 id~~~~l~~~-ypI~~I--EDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~--nq--- 162 (251)
.+....|++. -.++.| -+...+.=.+.-+++.+..+ +++|++-. |-+++-.+..++.+ +++|.+=+ +.
T Consensus 110 ~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~ik~~~~-~~~viaGN--V~T~e~a~~L~~aG-ad~vkVGiGpGsiCt 185 (352)
T PF00478_consen 110 FERAEALVEAGVDVIVIDSAHGHSEHVIDMIKKIKKKFP-DVPVIAGN--VVTYEGAKDLIDAG-ADAVKVGIGPGSICT 185 (352)
T ss_dssp HHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHHHHHHST-TSEEEEEE--E-SHHHHHHHHHTT--SEEEESSSSSTTBH
T ss_pred HHHHHHHHHcCCCEEEccccCccHHHHHHHHHHHHHhCC-CceEEecc--cCCHHHHHHHHHcC-CCEEEEeccCCcccc
Confidence 5677777653 334444 35555655666777777776 57777664 66788777777765 55543322 22
Q ss_pred --------cccHHHHHHHHHHHHHcCCcEEEecCCCCCCchhHhhhhhhcccCccccCCCCchh
Q 040341 163 --------IGSVTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSE 218 (251)
Q Consensus 163 --------iGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d~~iadLAva~~~~~ik~G~~~r~E 218 (251)
+..+|..+++++.|++++.++|-...-.-+.| .=-|+|.|+..+..|++..+.
T Consensus 186 Tr~v~GvG~PQ~tAv~~~a~~a~~~~v~iIADGGi~~sGD---i~KAla~GAd~VMlG~llAgt 246 (352)
T PF00478_consen 186 TREVTGVGVPQLTAVYECAEAARDYGVPIIADGGIRTSGD---IVKALAAGADAVMLGSLLAGT 246 (352)
T ss_dssp HHHHHSBSCTHHHHHHHHHHHHHCTTSEEEEESS-SSHHH---HHHHHHTT-SEEEESTTTTTB
T ss_pred cccccccCCcHHHHHHHHHHHhhhccCceeecCCcCcccc---eeeeeeecccceeechhhccC
Confidence 35799999999999999887776654333322 234677788899999886543
No 395
>TIGR03738 PRTRC_C PRTRC system protein C. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein C.
Probab=29.03 E-value=60 Score=23.32 Aligned_cols=32 Identities=22% Similarity=0.449 Sum_probs=25.2
Q ss_pred CCCCccChhhHHHHHHHhhhcCCce---eecCCCCccc
Q 040341 80 DGSQKVSGDGLKNVYRSFISDHPIV---SIEDPFDQDD 114 (251)
Q Consensus 80 d~~~~~s~~elid~~~~l~~~ypI~---~IEDP~~e~D 114 (251)
|++..+|+++..|+|. ..||.. .||-|--++|
T Consensus 18 DP~p~~spe~V~dfYs---~~YPeLttA~v~gP~~~~~ 52 (66)
T TIGR03738 18 DPSPAMSPEQVRDFYS---AQYPELLNAEVEGPVVKGG 52 (66)
T ss_pred CCCCCCCHHHHHHHHh---ccCchheeeeeeCCeEeCC
Confidence 6788999999999987 489943 6777776665
No 396
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=29.02 E-value=3.6e+02 Score=22.92 Aligned_cols=10 Identities=10% Similarity=0.109 Sum_probs=4.4
Q ss_pred HHHHHHhccC
Q 040341 143 RVEKAIKEKT 152 (251)
Q Consensus 143 ~i~~~i~~~a 152 (251)
.++.+.+.|+
T Consensus 84 ~~~~a~~aGa 93 (219)
T cd04729 84 EVDALAAAGA 93 (219)
T ss_pred HHHHHHHcCC
Confidence 4444444443
No 397
>PRK13937 phosphoheptose isomerase; Provisional
Probab=28.91 E-value=84 Score=26.45 Aligned_cols=51 Identities=10% Similarity=0.170 Sum_probs=38.0
Q ss_pred ceeEeeccccccHHHHHHHHHHHHHcCCcEEEecCCCCCCchhHhhhhhhc
Q 040341 154 NALLLKVNQIGSVTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGL 204 (251)
Q Consensus 154 n~ilIK~nqiGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d~~iadLAva~ 204 (251)
+-++|=+++-|.-.+++++++.|+++|.+++.=....++.-.-.+|..+-.
T Consensus 107 ~Dl~i~iS~sG~t~~~~~~~~~ak~~g~~~I~iT~~~~s~L~~~ad~~l~~ 157 (188)
T PRK13937 107 GDVLIGISTSGNSPNVLAALEKARELGMKTIGLTGRDGGKMKELCDHLLIV 157 (188)
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEe
Confidence 345666788899999999999999999998766655666555556655443
No 398
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=28.90 E-value=3.4e+02 Score=24.31 Aligned_cols=55 Identities=22% Similarity=0.289 Sum_probs=44.7
Q ss_pred CcceeEeeccccccHHHHHHHHHHHHHcCCcEEEecCCCCCCchhHhhhhhhccc
Q 040341 152 TCNALLLKVNQIGSVTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLAT 206 (251)
Q Consensus 152 a~n~ilIK~nqiGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d~~iadLAva~~~ 206 (251)
.-+-++|=.+--|.-.|++++++.|+++|.+++.=..+..+.-..+||+.+-...
T Consensus 176 ~~~Dv~i~iS~sG~t~e~i~~a~~ak~~ga~vIaiT~~~~spla~~Ad~~L~~~~ 230 (281)
T COG1737 176 TPGDVVIAISFSGYTREIVEAAELAKERGAKVIAITDSADSPLAKLADIVLLVPV 230 (281)
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEcCCCCCchhhhhceEEeccC
Confidence 3444566678889999999999999999999987777778888888888877733
No 399
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=28.88 E-value=5.4e+02 Score=24.91 Aligned_cols=123 Identities=14% Similarity=0.216 Sum_probs=75.4
Q ss_pred CCccChhhHHHHHHHhhhcCC---ce---eecCCCCc--ccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCc
Q 040341 82 SQKVSGDGLKNVYRSFISDHP---IV---SIEDPFDQ--DDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTC 153 (251)
Q Consensus 82 ~~~~s~~elid~~~~l~~~yp---I~---~IEDP~~e--~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~ 153 (251)
+..+|++|+++.+.++.+.+| .+ ..=+||.. .+++....+.++.+ .+.+|.+-.=...++.+++..+.+ .
T Consensus 57 ~~~Ltpee~~~~i~~v~~~~~~~~~V~iaG~GEPLl~~e~~~~~l~~~~~~~~-~i~i~lsTNG~~l~e~i~~L~~~g-v 134 (442)
T TIGR01290 57 SELLTPEQALRKARQVAAEIPQLSVVGIAGPGDPLANIGKTFQTLELVARQLP-DVKLCLSTNGLMLPEHVDRLVDLG-V 134 (442)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCCEEEEecCCCcccCccccHHHHHHHHHhcC-CCeEEEECCCCCCHHHHHHHHHCC-C
Confidence 356899999999888766553 22 22679984 46888888887753 245554432112377787776664 4
Q ss_pred ceeEeecccc---------------c---c--------HHHHHHHHHHHHHcCCcEEEecCC--CCC--CchhHhhhhhh
Q 040341 154 NALLLKVNQI---------------G---S--------VTESIEAVKMSKRAGWGVMASHRS--GET--EDTFIADLSVG 203 (251)
Q Consensus 154 n~ilIK~nqi---------------G---t--------lte~l~~~~~a~~~g~~~ivs~rs--gEt--~d~~iadLAva 203 (251)
+.++|.++-+ | | +...++.++.+.+.|+.++|-.-. |-+ +-.-+++++-.
T Consensus 135 d~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l~~l~~l~~~G~~v~v~~vlIpGiND~~i~~l~~~~~~ 214 (442)
T TIGR01290 135 GHVTITINAIDPAVGEKIYPWVWYEGERYTGREAADLLIERQLEGLEKLTERGILVKVNSVLIPGINDEHLVEVSKQVKE 214 (442)
T ss_pred CeEEEeccCCCHHHHhhcchhhccccccccCcchHHHHHHHHHHHHHHHHhCCCeEEEEEEeeCCcCHHHHHHHHHHHHh
Confidence 5677666521 1 1 334568888889999987665421 222 23445566655
Q ss_pred ccc
Q 040341 204 LAT 206 (251)
Q Consensus 204 ~~~ 206 (251)
+++
T Consensus 215 lg~ 217 (442)
T TIGR01290 215 LGA 217 (442)
T ss_pred CCC
Confidence 543
No 400
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=28.88 E-value=1.4e+02 Score=29.23 Aligned_cols=72 Identities=19% Similarity=0.336 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHcCCcEEEecCCCCCCchhHhhhhhhcccCccccCCCCchhHHHHhhHHHHHHHHhCCCccccCccc
Q 040341 168 ESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGPAAIYAGTKF 244 (251)
Q Consensus 168 e~l~~~~~a~~~g~~~ivs~rsgEt~d~~iadLAva~~~~~ik~G~~~r~Er~aKyN~llrie~~l~~~~~~~~~~~ 244 (251)
-++.+++.|++.|+.++.-+...+-.. +-|.+.-..+..|.+...+-.....+++...++.+..++++|--|
T Consensus 13 ia~ri~ra~~~lGi~tvav~s~~d~~~-----~~~~~adeav~i~~~~~~~syl~i~~ii~~a~~~gadai~pGygf 84 (449)
T COG0439 13 IAVRIIRACRELGIETVAVYSEADADA-----LHVALADEAVCIGPAPSADSYLNIDAIIAAAEETGADAIHPGYGF 84 (449)
T ss_pred hHHHHHHHHHHhCCeEEEEeccccccc-----hhhhhCceEEEcCCccchhhhhhHHHHHHHHHhcCCceEcccchh
Confidence 588999999999999976665444322 556666667777756667778888999999999999999988654
No 401
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=28.85 E-value=3.6e+02 Score=22.80 Aligned_cols=69 Identities=25% Similarity=0.221 Sum_probs=53.1
Q ss_pred HHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeeccccccHHHHHHHHHHHHHcC----CcEEEecC
Q 040341 117 HHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAG----WGVMASHR 188 (251)
Q Consensus 117 ~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqiGtlte~l~~~~~a~~~g----~~~ivs~r 188 (251)
-.+.+-+.-|-++.-.|-+ +.++++..++.....+.|.|......++..+.+.++..++.+ +++|||..
T Consensus 101 ~v~~~l~~~G~~vi~lG~~---~p~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~lr~~~~~~~~~i~vGG~ 173 (201)
T cd02070 101 LVATMLEANGFEVIDLGRD---VPPEEFVEAVKEHKPDILGLSALMTTTMGGMKEVIEALKEAGLRDKVKVMVGGA 173 (201)
T ss_pred HHHHHHHHCCCEEEECCCC---CCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHCCCCcCCeEEEECC
Confidence 3344455557677556765 368888888899999999999887788888888888888885 47788886
No 402
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=28.76 E-value=4.1e+02 Score=25.40 Aligned_cols=105 Identities=14% Similarity=0.238 Sum_probs=61.5
Q ss_pred cHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeecccccc----HHHHHHHHH---HHHHcCCcEEEe
Q 040341 114 DWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGS----VTESIEAVK---MSKRAGWGVMAS 186 (251)
Q Consensus 114 D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqiGt----lte~l~~~~---~a~~~g~~~ivs 186 (251)
+|+..++|.+.. +.+|+--. |.++++++++++.| +++|.+. |.-|+ .-.+++++. .+...++.++++
T Consensus 233 tW~di~~lr~~~--~~pvivKg--V~s~~dA~~a~~~G-vd~I~Vs-~hGGr~~d~~~~t~~~L~~i~~a~~~~~~vi~d 306 (381)
T PRK11197 233 SWKDLEWIRDFW--DGPMVIKG--ILDPEDARDAVRFG-ADGIVVS-NHGGRQLDGVLSSARALPAIADAVKGDITILAD 306 (381)
T ss_pred CHHHHHHHHHhC--CCCEEEEe--cCCHHHHHHHHhCC-CCEEEEC-CCCCCCCCCcccHHHHHHHHHHHhcCCCeEEee
Confidence 678888888888 66777776 58999999999875 5566655 22222 112233222 222345788887
Q ss_pred cCCCCCCchhHhhh--hhhcccCccccCCC-------CchhHHHHhhHHHHH
Q 040341 187 HRSGETEDTFIADL--SVGLATGQIKTGAP-------CRSERLAKYNQLLRI 229 (251)
Q Consensus 187 ~rsgEt~d~~iadL--Ava~~~~~ik~G~~-------~r~Er~aKyN~llri 229 (251)
..-- +. .|+ |+++|+..+-.|.| .+.|-+.++=++|+-
T Consensus 307 GGIr-~g----~Di~KALaLGA~~V~iGr~~l~~la~~G~~gv~~~l~~l~~ 353 (381)
T PRK11197 307 SGIR-NG----LDVVRMIALGADTVLLGRAFVYALAAAGQAGVANLLDLIEK 353 (381)
T ss_pred CCcC-cH----HHHHHHHHcCcCceeEhHHHHHHHHhccHHHHHHHHHHHHH
Confidence 7422 22 344 55556666655543 344556555555443
No 403
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.
Probab=28.58 E-value=4.2e+02 Score=23.52 Aligned_cols=81 Identities=12% Similarity=0.131 Sum_probs=51.2
Q ss_pred CCceeecCCCCcccHHHHHHHHhhhCCceEEEccccccc---CHHHHHHHHhccCcceeEeeccccccHHHHHHHHHHHH
Q 040341 101 HPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVT---NPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSK 177 (251)
Q Consensus 101 ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vt---n~~~i~~~i~~~a~n~ilIK~nqiGtlte~l~~~~~a~ 177 (251)
.-++...+|+.++=...+.+..++.| ..|+.+..+-. +...+-.-+....+++|++ .++-.++..+++.++
T Consensus 138 v~~i~~~~~~g~~~~~~~~~~~~~~G--~~vv~~~~~~~~~~d~~~~v~~l~~~~~d~v~~----~~~~~~~~~~~~~~~ 211 (334)
T cd06327 138 WFFLTADYAFGHSLERDARKVVKANG--GKVVGSVRHPLGTSDFSSYLLQAQASGADVLVL----ANAGADTVNAIKQAA 211 (334)
T ss_pred EEEEecchHHhHHHHHHHHHHHHhcC--CEEcCcccCCCCCccHHHHHHHHHhCCCCEEEE----eccchhHHHHHHHHH
Confidence 34666688888777777777767764 66777764332 3232222233445778877 345567778889999
Q ss_pred HcCC--cEEEec
Q 040341 178 RAGW--GVMASH 187 (251)
Q Consensus 178 ~~g~--~~ivs~ 187 (251)
+.|+ .+++..
T Consensus 212 ~~g~~~~~~~~~ 223 (334)
T cd06327 212 EFGLTKGQKLAG 223 (334)
T ss_pred HhCCccCCcEEE
Confidence 9998 455544
No 404
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=28.57 E-value=1.1e+02 Score=32.42 Aligned_cols=101 Identities=19% Similarity=0.266 Sum_probs=59.6
Q ss_pred CceeecCCCCcccHHHHHHHHhhhCCceEEE-cccccccCHHHHHHHHhccCcceeE---e---------------ec-c
Q 040341 102 PIVSIEDPFDQDDWEHHAELTGKIGRHVQIV-GDDLLVTNPKRVEKAIKEKTCNALL---L---------------KV-N 161 (251)
Q Consensus 102 pI~~IEDP~~e~D~~~~~~l~~~lg~~~~iv-gDdl~vtn~~~i~~~i~~~a~n~il---I---------------K~-n 161 (251)
+++.++||+.++=-+.-+++++. |-++-++ ||.. .+...+.+-+.....+.+. + ++ .
T Consensus 508 Gli~l~Dp~R~~~~~aI~~l~~a-GI~vvmiTGD~~--~tA~aIA~~lGI~~~~v~~g~~l~~~~~~el~~~~~~~~vfA 584 (867)
T TIGR01524 508 GFLGFLDPPKESTKEAIAALFKN-GINVKVLTGDNE--IVTARICQEVGIDANDFLLGADIEELSDEELARELRKYHIFA 584 (867)
T ss_pred EEEEeeCCCchhHHHHHHHHHHC-CCEEEEEcCCCH--HHHHHHHHHcCCCCCCeeecHhhhhCCHHHHHHHhhhCeEEE
Confidence 36788999999888888888653 5465555 6652 2333333322221111110 0 00 1
Q ss_pred ccccHHHHHHHHHHHHHcCCcE-EEecCCCCCCchhHhhhhhhccc
Q 040341 162 QIGSVTESIEAVKMSKRAGWGV-MASHRSGETEDTFIADLSVGLAT 206 (251)
Q Consensus 162 qiGtlte~l~~~~~a~~~g~~~-ivs~rsgEt~d~~iadLAva~~~ 206 (251)
| -+..+=.++++..|+.|..| |+|...-+..-=.-||+.+|++.
T Consensus 585 r-~~Pe~K~~iV~~lq~~G~vVam~GDGvNDapALk~AdVGIAmg~ 629 (867)
T TIGR01524 585 R-LTPMQKSRIIGLLKKAGHTVGFLGDGINDAPALRKADVGISVDT 629 (867)
T ss_pred E-CCHHHHHHHHHHHHhCCCEEEEECCCcccHHHHHhCCEEEEeCC
Confidence 2 24555678888889999766 77776555555566788777763
No 405
>PF03828 PAP_assoc: Cid1 family poly A polymerase; InterPro: IPR002058 These PAP/25A associated domains are found in uncharacterised eukaryotic proteins, a number of which are described as 'topoisomerase 1-related' though they appear to have little or no homology to topoisomerase 1. The signatures that define this group of sequences often occur towards the C terminus after the PAP/25A core domain IPR001201 from INTERPRO.; PDB: 2B4V_A 2B56_A 2B51_A 4EP7_B 2NOM_B 2Q0G_B 2Q0D_B 2Q0C_A 2Q0F_A 2Q0E_A ....
Probab=28.55 E-value=24 Score=23.74 Aligned_cols=13 Identities=46% Similarity=0.805 Sum_probs=10.2
Q ss_pred CCceeecCCCCcc
Q 040341 101 HPIVSIEDPFDQD 113 (251)
Q Consensus 101 ypI~~IEDP~~e~ 113 (251)
...++|||||..+
T Consensus 47 ~~~l~IeDP~~~~ 59 (60)
T PF03828_consen 47 KKRLCIEDPFDPS 59 (60)
T ss_dssp CSSSEBBESSSTT
T ss_pred CCeEEEECCCCCC
Confidence 4478999999864
No 406
>PRK09482 flap endonuclease-like protein; Provisional
Probab=28.52 E-value=2.4e+02 Score=25.40 Aligned_cols=87 Identities=22% Similarity=0.197 Sum_probs=52.2
Q ss_pred HHHHHHHHHhcCCcc-ceeeeeehhhhc-ccccCCcce-eecCCCCCCCCCCccChhhHH---HHHHHhhhcCCceeecC
Q 040341 35 FELLKTAIAKGGYIG-KIVIGMDVAASE-FYDSKDKTY-DLNFKEENNDGSQKVSGDGLK---NVYRSFISDHPIVSIED 108 (251)
Q Consensus 35 l~~i~~Ai~~aGy~~-kI~iglD~Aase-~~~~~~g~Y-~l~~~~~~~d~~~~~s~~eli---d~~~~l~~~ypI~~IED 108 (251)
+..|...+++ +++ .|.++.|..... -|+. ..| + +| +|+..+|+++. ++.+++++.++|..++-
T Consensus 35 ~~~l~~ll~~--~~p~~i~v~fD~~~~~~~fR~--~l~p~--YK-----a~R~~~Pe~l~~Q~~~i~~~l~~~gi~~~~~ 103 (256)
T PRK09482 35 QHALDKLIRH--SQPTHAVAVFDGDARSSGWRH--QLLPD--YK-----AGRKPMPEALQQGLPAIRAAFEELGIDSWHA 103 (256)
T ss_pred HHHHHHHHHH--cCCCEEEEEEeCCCCCcccHH--HHhHH--Hh-----cCCCCCcHHHHHHHHHHHHHHHhCCCCEecc
Confidence 5566666654 345 588999986543 1233 234 2 23 56767787765 66678888999888877
Q ss_pred CCCc-ccHHHHHHHHhh---hCCceEEEcc
Q 040341 109 PFDQ-DDWEHHAELTGK---IGRHVQIVGD 134 (251)
Q Consensus 109 P~~e-~D~~~~~~l~~~---lg~~~~ivgD 134 (251)
|=.| ||+-+ .|..+ .|..+.||.-
T Consensus 104 ~g~EADDvIa--tla~~~~~~~~~v~I~S~ 131 (256)
T PRK09482 104 DGNEADDLIA--TLAVKVAQAGHQATIVST 131 (256)
T ss_pred CCcCHHHHHH--HHHHHHHHCCCeEEEEEC
Confidence 7654 55533 33322 3446666643
No 407
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=28.50 E-value=1.8e+02 Score=27.45 Aligned_cols=19 Identities=5% Similarity=0.142 Sum_probs=13.9
Q ss_pred cCHHHHHHHHhccCcceeE
Q 040341 139 TNPKRVEKAIKEKTCNALL 157 (251)
Q Consensus 139 tn~~~i~~~i~~~a~n~il 157 (251)
+++++.+++++.+.|+.|.
T Consensus 308 ~~~~~a~~~l~~g~~D~V~ 326 (361)
T cd04747 308 ASLDRLLERLERGEFDLVA 326 (361)
T ss_pred CCHHHHHHHHHCCCCCeeh
Confidence 6788888888777777644
No 408
>PRK12342 hypothetical protein; Provisional
Probab=28.49 E-value=4e+02 Score=23.88 Aligned_cols=85 Identities=14% Similarity=0.198 Sum_probs=54.6
Q ss_pred CceeecCCCCcccHHHHHHHHhhhCCceEEE--cccccccCHHHHHHHHhccCcceeEeeccc---cccHHHHHHHHHHH
Q 040341 102 PIVSIEDPFDQDDWEHHAELTGKIGRHVQIV--GDDLLVTNPKRVEKAIKEKTCNALLLKVNQ---IGSVTESIEAVKMS 176 (251)
Q Consensus 102 pI~~IEDP~~e~D~~~~~~l~~~lg~~~~iv--gDdl~vtn~~~i~~~i~~~a~n~ilIK~nq---iGtlte~l~~~~~a 176 (251)
.+-++..||++.=++.=-.|. +.|.++-++ |.. ......-+++++.+|+-++++|-=.+ .-|+.-+.-.+...
T Consensus 28 ~~~~~iNp~D~~AlE~AlrLk-~~g~~Vtvls~Gp~-~a~~~~l~r~alamGaD~avli~d~~~~g~D~~ata~~La~~i 105 (254)
T PRK12342 28 NAEAKISQFDLNAIEAASQLA-TDGDEIAALTVGGS-LLQNSKVRKDVLSRGPHSLYLVQDAQLEHALPLDTAKALAAAI 105 (254)
T ss_pred CCCccCChhhHHHHHHHHHHh-hcCCEEEEEEeCCC-hHhHHHHHHHHHHcCCCEEEEEecCccCCCCHHHHHHHHHHHH
Confidence 455677888888777777777 456555432 433 11111233679999999999996333 34454455566667
Q ss_pred HHcCCcEEEecC
Q 040341 177 KRAGWGVMASHR 188 (251)
Q Consensus 177 ~~~g~~~ivs~r 188 (251)
++.|+..++..+
T Consensus 106 ~~~~~DLVl~G~ 117 (254)
T PRK12342 106 EKIGFDLLLFGE 117 (254)
T ss_pred HHhCCCEEEEcC
Confidence 777888877764
No 409
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=28.37 E-value=4.5e+02 Score=23.84 Aligned_cols=93 Identities=15% Similarity=0.126 Sum_probs=68.6
Q ss_pred hhHHHHHHHhhhcCCceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeeccccccHH
Q 040341 88 DGLKNVYRSFISDHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVT 167 (251)
Q Consensus 88 ~elid~~~~l~~~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqiGtlt 167 (251)
+|=++++.+.-++|++-.+=|-...++.+.-++. + .+.=+|=- .+.|.+.++.+-+ ....||||=+|..|+.
T Consensus 59 eeGL~iL~~vk~~~glpvvTeV~~~~~~~~vae~---v--DilQIgAr-n~rn~~LL~a~g~--t~kpV~lKrG~~~t~~ 130 (258)
T TIGR01362 59 EEGLKILQKVKEEFGVPILTDVHESSQCEPVAEV---V--DIIQIPAF-LCRQTDLLVAAAK--TGRIVNVKKGQFLSPW 130 (258)
T ss_pred HHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhh---C--cEEEeCch-hcchHHHHHHHhc--cCCeEEecCCCcCCHH
Confidence 4557888887678887667677776666555443 3 34444554 5778877776644 5779999999999999
Q ss_pred HHHHHHHHHHHcCCc-EEEecC
Q 040341 168 ESIEAVKMSKRAGWG-VMASHR 188 (251)
Q Consensus 168 e~l~~~~~a~~~g~~-~ivs~r 188 (251)
|.+-+++...+.|-. +|+..|
T Consensus 131 e~l~aaeyi~~~Gn~~viLcER 152 (258)
T TIGR01362 131 DMKNVVEKVLSTGNKNILLCER 152 (258)
T ss_pred HHHHHHHHHHHcCCCcEEEEeC
Confidence 999999998888765 677777
No 410
>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor. Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes
Probab=28.27 E-value=4.7e+02 Score=25.04 Aligned_cols=96 Identities=10% Similarity=0.099 Sum_probs=52.2
Q ss_pred HHHHHHHhhhcCC-----ceeecCCCCcccHHHHHHHHhhhCCceEEEccccccc--CHHHHHHHH----hccCcceeEe
Q 040341 90 LKNVYRSFISDHP-----IVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVT--NPKRVEKAI----KEKTCNALLL 158 (251)
Q Consensus 90 lid~~~~l~~~yp-----I~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vt--n~~~i~~~i----~~~a~n~ilI 158 (251)
+...+.+++..|+ +++..|.+...=.+.+.+..++. .+.|+..+.+.. +..+....+ ....+++|++
T Consensus 161 qa~ai~~ll~~~~W~~Vaii~~~~~yG~~~~~~~~~~~~~~--gi~i~~~~~i~~~~~~~d~~~~l~~l~~~~~a~vVvl 238 (458)
T cd06375 161 QAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLR--NICIATSEKVGRSADRKSYDSVIRKLLQKPNARVVVL 238 (458)
T ss_pred HHHHHHHHHHHCCCeEEEEEEeCchHHHHHHHHHHHHHHHC--CeeEEEEEEecCCCCHHHHHHHHHHHhccCCCEEEEE
Confidence 3444444555444 34444554443344444444444 455665553322 233433322 2245666665
Q ss_pred eccccccHHHHHHHHHHHHHcCCc-EEEecCCCC
Q 040341 159 KVNQIGSVTESIEAVKMSKRAGWG-VMASHRSGE 191 (251)
Q Consensus 159 K~nqiGtlte~l~~~~~a~~~g~~-~ivs~rsgE 191 (251)
= +...++..+++.|++.|+. +||++....
T Consensus 239 ~----~~~~~~~~ll~~a~~~g~~~~wigs~~~~ 268 (458)
T cd06375 239 F----TRSEDARELLAAAKRLNASFTWVASDGWG 268 (458)
T ss_pred e----cChHHHHHHHHHHHHcCCcEEEEEecccc
Confidence 3 5567888899999999997 688775443
No 411
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=28.20 E-value=2.7e+02 Score=21.10 Aligned_cols=65 Identities=23% Similarity=0.182 Sum_probs=45.6
Q ss_pred HHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeeccccccHHHHHHHHHHHHHc---CCcEEEecC
Q 040341 121 LTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRA---GWGVMASHR 188 (251)
Q Consensus 121 l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqiGtlte~l~~~~~a~~~---g~~~ivs~r 188 (251)
+-+.-|-++...|-+ +.++.+.+++.....+.+.|-...-..+..+.+.++..++. +..+++|..
T Consensus 22 ~l~~~G~~V~~lg~~---~~~~~l~~~~~~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vGG~ 89 (119)
T cd02067 22 ALRDAGFEVIDLGVD---VPPEEIVEAAKEEDADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVGGA 89 (119)
T ss_pred HHHHCCCEEEECCCC---CCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEECC
Confidence 334445566444433 46778888888888889998877666777778888887777 456788885
No 412
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=28.13 E-value=2.9e+02 Score=25.42 Aligned_cols=30 Identities=20% Similarity=0.252 Sum_probs=19.6
Q ss_pred cHHHHHHHHHHHHHcCCcEEEecCCCCCCc
Q 040341 165 SVTESIEAVKMSKRAGWGVMASHRSGETED 194 (251)
Q Consensus 165 tlte~l~~~~~a~~~g~~~ivs~rsgEt~d 194 (251)
+.....++++.+++.+..++|+-.-|-.-|
T Consensus 62 ~~~~v~~~~~~~~~~~~D~IIavGGGS~iD 91 (351)
T cd08170 62 TRAEIERLAEIARDNGADVVIGIGGGKTLD 91 (351)
T ss_pred CHHHHHHHHHHHhhcCCCEEEEecCchhhH
Confidence 556666667777777777777776555544
No 413
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=28.10 E-value=3e+02 Score=23.06 Aligned_cols=89 Identities=19% Similarity=0.133 Sum_probs=49.5
Q ss_pred HHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeeccccccHHHHHHHHHHHHHcCCcEEEecCCCCCCch
Q 040341 116 EHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAGWGVMASHRSGETEDT 195 (251)
Q Consensus 116 ~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqiGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d~ 195 (251)
+.++.+.+..+....|.- -+.|.+.++.+++.+ ++.|.+--- ++.+.-++++..+..+..+.+... |.-...
T Consensus 68 ~av~~~~~~~~~~~~I~V---Ev~~~ee~~ea~~~g-~d~I~lD~~---~~~~~~~~v~~l~~~~~~v~ie~S-GGI~~~ 139 (169)
T PF01729_consen 68 EAVKAARQAAPEKKKIEV---EVENLEEAEEALEAG-ADIIMLDNM---SPEDLKEAVEELRELNPRVKIEAS-GGITLE 139 (169)
T ss_dssp HHHHHHHHHSTTTSEEEE---EESSHHHHHHHHHTT--SEEEEES----CHHHHHHHHHHHHHHTTTSEEEEE-SSSSTT
T ss_pred HHHHHHHHhCCCCceEEE---EcCCHHHHHHHHHhC-CCEEEecCc---CHHHHHHHHHHHhhcCCcEEEEEE-CCCCHH
Confidence 456666666554432221 355778888888765 555555422 456666666666666666655552 444445
Q ss_pred hHhhhhhhcccCccccCC
Q 040341 196 FIADLSVGLATGQIKTGA 213 (251)
Q Consensus 196 ~iadLAva~~~~~ik~G~ 213 (251)
.+.++| .++...|-+|+
T Consensus 140 ni~~ya-~~gvD~isvg~ 156 (169)
T PF01729_consen 140 NIAEYA-KTGVDVISVGS 156 (169)
T ss_dssp THHHHH-HTT-SEEEECH
T ss_pred HHHHHH-hcCCCEEEcCh
Confidence 566666 44555555554
No 414
>cd06363 PBP1_Taste_receptor Ligand-binding domain of the T1R taste receptor. Ligand-binding domain of the T1R taste receptor. The T1R is a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptors, GABAb receptors, the calcium-sensing receptor (CaSR), the V2R pheromone receptors, and a small group of uncharacterized orphan receptors.
Probab=28.07 E-value=3.3e+02 Score=25.40 Aligned_cols=92 Identities=11% Similarity=0.162 Sum_probs=51.2
Q ss_pred HHHHHHhhhcCC-----ceeecCCCCcccHHHHHHHHhhhCCceEEEccccccc---CHHHHHH---HHhccCcceeEee
Q 040341 91 KNVYRSFISDHP-----IVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVT---NPKRVEK---AIKEKTCNALLLK 159 (251)
Q Consensus 91 id~~~~l~~~yp-----I~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vt---n~~~i~~---~i~~~a~n~ilIK 159 (251)
...+.+++.+|+ +++-.|++..+=...+.+..++. .+.|+.++.+-. ...+... -+.....++|++-
T Consensus 164 ~~al~~~l~~~~~k~vaii~~~~~~g~~~~~~~~~~l~~~--gi~i~~~~~~~~~~~~~~d~~~~l~~i~~~~~dvIil~ 241 (410)
T cd06363 164 IEAMVQLLQEFGWNWVAFLGSDDEYGRDGLQLFSELIANT--GICIAYQGLIPLDTDPETDYQQILKQINQTKVNVIVVF 241 (410)
T ss_pred HHHHHHHHHHCCCcEEEEEEeCChhHHHHHHHHHHHHHHC--CeEEEEEEEecCCCchHHHHHHHHHHHhcCCCeEEEEE
Confidence 344444444443 34445666644345555554554 467777663321 2233332 2334456667663
Q ss_pred ccccccHHHHHHHHHHHHHcCCc--EEEecC
Q 040341 160 VNQIGSVTESIEAVKMSKRAGWG--VMASHR 188 (251)
Q Consensus 160 ~nqiGtlte~l~~~~~a~~~g~~--~ivs~r 188 (251)
+...++..+++.+++.|+. +|+++.
T Consensus 242 ----~~~~~~~~il~qa~~~g~~~~~~i~~~ 268 (410)
T cd06363 242 ----ASRQPAEAFFNSVIQQNLTGKVWIASE 268 (410)
T ss_pred ----cChHHHHHHHHHHHhcCCCCCEEEEeC
Confidence 5567777888999998884 567764
No 415
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=27.94 E-value=2.4e+02 Score=26.09 Aligned_cols=79 Identities=19% Similarity=0.132 Sum_probs=51.6
Q ss_pred ceeecCCCCcccHHHHHHHHhhhCCceEEEc-c-cccccCHHHHHHHHhccCcceeEeeccccccHHHHHHHHHHHHHcC
Q 040341 103 IVSIEDPFDQDDWEHHAELTGKIGRHVQIVG-D-DLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAG 180 (251)
Q Consensus 103 I~~IEDP~~e~D~~~~~~l~~~lg~~~~ivg-D-dl~vtn~~~i~~~i~~~a~n~ilIK~nqiGtlte~l~~~~~a~~~g 180 (251)
-|.+..|-. .+........|-++..|- | +.+.-+++.+++++..+ ..+|++ .|..|+..+.-+++++|+++|
T Consensus 73 ~Viv~~~t~----~~~~~~~~~~G~~~v~~d~d~~~~~~d~~~le~~i~~~-tk~i~~-~~~~G~~~~~~~i~~la~~~~ 146 (375)
T PRK11706 73 EVIMPSYTF----VSTANAFVLRGAKIVFVDIRPDTMNIDETLIEAAITPK-TRAIVP-VHYAGVACEMDTIMALAKKHN 146 (375)
T ss_pred EEEECCCCc----HHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHhcCCC-CeEEEE-eCCCCCccCHHHHHHHHHHcC
Confidence 566666654 334444455565554442 2 22345799999988653 455554 466788888888999999999
Q ss_pred CcEEEec
Q 040341 181 WGVMASH 187 (251)
Q Consensus 181 ~~~ivs~ 187 (251)
+.+++-.
T Consensus 147 i~vIeD~ 153 (375)
T PRK11706 147 LFVVEDA 153 (375)
T ss_pred CEEEEEC
Confidence 9877654
No 416
>PRK08960 hypothetical protein; Provisional
Probab=27.91 E-value=3.8e+02 Score=24.67 Aligned_cols=151 Identities=17% Similarity=0.174 Sum_probs=79.5
Q ss_pred CCCCCcHHHHHHHHHHHHh--cCCcc-ceeeeeehhhhcccccCCcceeecCCCCCCCCCCcc--ChhhHHHHHHHhh-h
Q 040341 26 PNIQESYEGFELLKTAIAK--GGYIG-KIVIGMDVAASEFYDSKDKTYDLNFKEENNDGSQKV--SGDGLKNVYRSFI-S 99 (251)
Q Consensus 26 p~~~~~eeal~~i~~Ai~~--aGy~~-kI~iglD~Aase~~~~~~g~Y~l~~~~~~~d~~~~~--s~~elid~~~~l~-~ 99 (251)
|++..++.+++.+.+++.. .+|.+ .-...+--+..+++.. .|.+... | .+-.. ...+.+......+ +
T Consensus 42 ~~~~~~~~v~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~---~~g~~~~-~---~~i~it~G~~~al~~~~~~~~~ 114 (387)
T PRK08960 42 PDFTTAEPIVAAGQAALAAGHTRYTAARGLPALREAIAGFYAQ---RYGVDVD-P---ERILVTPGGSGALLLASSLLVD 114 (387)
T ss_pred CCCCCCHHHHHHHHHHHhcCCCccCCCCCCHHHHHHHHHHHHH---HhCCCCC-h---hhEEEccCcHHHHHHHHHHhcC
Confidence 3444468888888888853 24542 1111121233444432 1211110 0 01112 2455555544433 3
Q ss_pred cCCceeecCCCCcccHHHHHHHHhhhCCceEEE-ccc--ccccCHHHHHHHHhccCcceeEeec-ccccc---HHHHHHH
Q 040341 100 DHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIV-GDD--LLVTNPKRVEKAIKEKTCNALLLKV-NQIGS---VTESIEA 172 (251)
Q Consensus 100 ~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~iv-gDd--l~vtn~~~i~~~i~~~a~n~ilIK~-nqiGt---lte~l~~ 172 (251)
.=.-+.+++|-...-+..+..+ |.++..+ -|+ -+.-+++.+++.+..+..-.++.-| |-.|. ..+..++
T Consensus 115 ~gd~vlv~~p~y~~~~~~~~~~----g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~~~~~~~l 190 (387)
T PRK08960 115 PGKHWLLADPGYPCNRHFLRLV----EGAAQLVPVGPDSRYQLTPALVERHWNADTVGALVASPANPTGTLLSRDELAAL 190 (387)
T ss_pred CCCEEEEcCCCCcchHHHHHhc----CCeEEEEecCcccCCCCCHHHHHHHhCccceEEEEECCCCCCCcCcCHHHHHHH
Confidence 3346788999886665544432 3333222 232 2345688888877765444455566 44444 4567778
Q ss_pred HHHHHHcCCcEEEec
Q 040341 173 VKMSKRAGWGVMASH 187 (251)
Q Consensus 173 ~~~a~~~g~~~ivs~ 187 (251)
+++|+++|+.+++-.
T Consensus 191 ~~~~~~~~~~li~De 205 (387)
T PRK08960 191 SQALRARGGHLVVDE 205 (387)
T ss_pred HHHHHHcCCEEEEEc
Confidence 889999998777654
No 417
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=27.86 E-value=1.8e+02 Score=25.97 Aligned_cols=83 Identities=13% Similarity=0.144 Sum_probs=50.5
Q ss_pred ceeecCCCCcccHHHHHHHHhhhCCceEEE-cccccccCHHHHHHHHhcc-----CcceeE-eec-cccccHHHHHHHHH
Q 040341 103 IVSIEDPFDQDDWEHHAELTGKIGRHVQIV-GDDLLVTNPKRVEKAIKEK-----TCNALL-LKV-NQIGSVTESIEAVK 174 (251)
Q Consensus 103 I~~IEDP~~e~D~~~~~~l~~~lg~~~~iv-gDdl~vtn~~~i~~~i~~~-----a~n~il-IK~-nqiGtlte~l~~~~ 174 (251)
++.+.+|-+. .|.+..+.+|.++..+ .|+-..-+++.+++.+... ....+. .-+ |-.|.+.+.-++++
T Consensus 97 ~v~~~~~~h~----~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~ 172 (345)
T cd06450 97 VIVCSDQAHV----SVEKAAAYLDVKVRLVPVDEDGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEIAD 172 (345)
T ss_pred EEEEcCcchh----HHHHHHHHHhcCeEEeeeCCCCCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCCHHHHHH
Confidence 5556665543 3444444444444444 3432455899999888651 111222 222 45788888889999
Q ss_pred HHHHcCCcEEEecCC
Q 040341 175 MSKRAGWGVMASHRS 189 (251)
Q Consensus 175 ~a~~~g~~~ivs~rs 189 (251)
+|+++|+.+++-.-.
T Consensus 173 ~~~~~~~~l~vD~a~ 187 (345)
T cd06450 173 LAEKYDLWLHVDAAY 187 (345)
T ss_pred HHHHhCCeEEEechh
Confidence 999999988776543
No 418
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=27.84 E-value=1.1e+02 Score=31.60 Aligned_cols=95 Identities=16% Similarity=0.281 Sum_probs=61.8
Q ss_pred ceeecCCCCcccHHHHHHHHhhhCCceEEE-cccccccCHHHHHHHHhccCcceeEeeccccccHHHHHHHHHHHHHcCC
Q 040341 103 IVSIEDPFDQDDWEHHAELTGKIGRHVQIV-GDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAGW 181 (251)
Q Consensus 103 I~~IEDP~~e~D~~~~~~l~~~lg~~~~iv-gDdl~vtn~~~i~~~i~~~a~n~ilIK~nqiGtlte~l~~~~~a~~~g~ 181 (251)
++.++||+.++=-+..++|++. |=++.++ ||. ..+.+.+.+-+ |--+ + ..+. +..+=+++++..|+.|-
T Consensus 439 ~i~l~D~~R~~~~eai~~Lr~~-GI~vvMiTGDn--~~TA~aIA~el--GId~-v---~A~~-~PedK~~iV~~lQ~~G~ 508 (679)
T PRK01122 439 VIYLKDIVKPGIKERFAELRKM-GIKTVMITGDN--PLTAAAIAAEA--GVDD-F---LAEA-TPEDKLALIRQEQAEGR 508 (679)
T ss_pred EEEEeccCchhHHHHHHHHHHC-CCeEEEECCCC--HHHHHHHHHHc--CCcE-E---EccC-CHHHHHHHHHHHHHcCC
Confidence 6789999999999999988764 4466665 664 23444444321 2111 1 1222 56677888999999996
Q ss_pred cE-EEecCCCCCCchhHhhhhhhcccC
Q 040341 182 GV-MASHRSGETEDTFIADLSVGLATG 207 (251)
Q Consensus 182 ~~-ivs~rsgEt~d~~iadLAva~~~~ 207 (251)
.| |+|...-+..-=.-||+.+|+++|
T Consensus 509 ~VaMtGDGvNDAPALa~ADVGIAMgsG 535 (679)
T PRK01122 509 LVAMTGDGTNDAPALAQADVGVAMNSG 535 (679)
T ss_pred eEEEECCCcchHHHHHhCCEeEEeCCC
Confidence 55 777765555445667888888754
No 419
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=27.71 E-value=2.9e+02 Score=24.03 Aligned_cols=101 Identities=19% Similarity=0.284 Sum_probs=52.3
Q ss_pred ccChhhHHHHHHHhhhcCCceeecCC-CCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHh----c-cCcceeE
Q 040341 84 KVSGDGLKNVYRSFISDHPIVSIEDP-FDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIK----E-KTCNALL 157 (251)
Q Consensus 84 ~~s~~elid~~~~l~~~ypI~~IEDP-~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~----~-~a~n~il 157 (251)
..+.+++...+......-+.--|+++ +.+++|+.+.+....+...- +.-++..-.+++.|...+. . +....|+
T Consensus 57 Em~~~~l~~R~la~~s~v~~~~i~~g~l~~~e~~~~~~~~~~l~~~~-l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~ 135 (259)
T PF03796_consen 57 EMSEEELAARLLARLSGVPYNKIRSGDLSDEEFERLQAAAEKLSDLP-LYIEDTPSLTIDDIESKIRRLKREGKKVDVVF 135 (259)
T ss_dssp SS-HHHHHHHHHHHHHTSTHHHHHCCGCHHHHHHHHHHHHHHHHTSE-EEEEESSS-BHHHHHHHHHHHHHHSTTEEEEE
T ss_pred CCCHHHHHHHHHHHhhcchhhhhhccccCHHHHHHHHHHHHHHhhCc-EEEECCCCCCHHHHHHHHHHHHhhccCCCEEE
Confidence 35566665555554445555555555 55666666666666664322 2222223346666664433 2 3344554
Q ss_pred e------ecc--------ccccHHHHHHHHHHHHHcCCcEEEec
Q 040341 158 L------KVN--------QIGSVTESIEAVKMSKRAGWGVMASH 187 (251)
Q Consensus 158 I------K~n--------qiGtlte~l~~~~~a~~~g~~~ivs~ 187 (251)
| +++ +++-+++ +.-++|++.+++||+-+
T Consensus 136 IDyl~ll~~~~~~~~~~~~~~~i~~--~Lk~lA~~~~i~vi~~s 177 (259)
T PF03796_consen 136 IDYLQLLKSEDSSDNRRQEIGEISR--ELKALAKELNIPVIALS 177 (259)
T ss_dssp EEEGGGSBTSCSSSCCHHHHHHHHH--HHHHHHHHHTSEEEEEE
T ss_pred echHHHhcCCCCCCCHHHHHHHHHH--HHHHHHHHcCCeEEEcc
Confidence 3 332 1222322 33468999999998755
No 420
>PRK08445 hypothetical protein; Provisional
Probab=27.70 E-value=2.2e+02 Score=26.58 Aligned_cols=110 Identities=13% Similarity=0.074 Sum_probs=59.7
Q ss_pred cChhhHHHHHHHhhhcCC---ceee-cCCCCcccHHHHHHHHhhhC---CceEEEc------ccc----cccCHHHHHHH
Q 040341 85 VSGDGLKNVYRSFISDHP---IVSI-EDPFDQDDWEHHAELTGKIG---RHVQIVG------DDL----LVTNPKRVEKA 147 (251)
Q Consensus 85 ~s~~elid~~~~l~~~yp---I~~I-EDP~~e~D~~~~~~l~~~lg---~~~~ivg------Ddl----~vtn~~~i~~~ 147 (251)
++.+|+.+...+. .+++ |++. .+++. -+++-+.++-+.+. ..+.+++ |.. -.++.+.+++.
T Consensus 73 l~~eeI~~~~~~a-~~~g~~~i~~~gg~~~~-~~~e~~~~l~~~Ik~~~p~i~~~a~s~~ei~~~a~~~~~~~~e~L~~L 150 (348)
T PRK08445 73 LSFEEIDKKIEEL-LAIGGTQILFQGGVHPK-LKIEWYENLVSHIAQKYPTITIHGFSAVEIDYIAKISKISIKEVLERL 150 (348)
T ss_pred CCHHHHHHHHHHH-HHcCCCEEEEecCCCCC-CCHHHHHHHHHHHHHHCCCcEEEEccHHHHHHHHHHhCCCHHHHHHHH
Confidence 4889988887774 5544 4444 23433 24444444443332 2366654 210 01235666655
Q ss_pred HhccCcce--eEe--------e-c-cccccHHHHHHHHHHHHHcCCcE----EEecCCCCCCchhHh
Q 040341 148 IKEKTCNA--LLL--------K-V-NQIGSVTESIEAVKMSKRAGWGV----MASHRSGETEDTFIA 198 (251)
Q Consensus 148 i~~~a~n~--ilI--------K-~-nqiGtlte~l~~~~~a~~~g~~~----ivs~rsgEt~d~~ia 198 (251)
-+.|.... +.+ + . +..-|..+-+++++.|++.|+.+ |+|+ +||...++-
T Consensus 151 keAGl~~~~g~glE~~~d~v~~~~~pk~~t~~~~i~~i~~a~~~Gi~~~sg~i~G~--~Et~edr~~ 215 (348)
T PRK08445 151 QAKGLSSIPGAGAEILSDRVRDIIAPKKLDSDRWLEVHRQAHLIGMKSTATMMFGT--VENDEEIIE 215 (348)
T ss_pred HHcCCCCCCCCceeeCCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCeeeeEEEecC--CCCHHHHHH
Confidence 55444322 111 2 1 22445556799999999999998 6665 687544433
No 421
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=27.59 E-value=4.5e+02 Score=24.26 Aligned_cols=109 Identities=20% Similarity=0.213 Sum_probs=66.5
Q ss_pred hhhcCCceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEee-c-cccccHHHHHHHHH
Q 040341 97 FISDHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK-V-NQIGSVTESIEAVK 174 (251)
Q Consensus 97 l~~~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK-~-nqiGtlte~l~~~~ 174 (251)
++..-.-+.+.+|....-...+..+.+..|-++..+ | ..+++.+++++.. ....|.+- | |..|.+...-++++
T Consensus 75 l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v--~--~~d~~~l~~~i~~-~~~~v~~e~~~np~g~~~dl~~i~~ 149 (369)
T cd00614 75 LLKAGDHVVASDDLYGGTYRLFERLLPKLGIEVTFV--D--PDDPEALEAAIKP-ETKLVYVESPTNPTLKVVDIEAIAE 149 (369)
T ss_pred HcCCCCEEEECCCCcchHHHHHHHHHhhcCeEEEEe--C--CCCHHHHHHhcCC-CCeEEEEECCCCCCCeecCHHHHHH
Confidence 333333455566666555555666666665444333 2 2357888887754 34445443 2 55688888888899
Q ss_pred HHHHcCCcEEEecCCCCC----CchhHhhhhhhcccCccc
Q 040341 175 MSKRAGWGVMASHRSGET----EDTFIADLSVGLATGQIK 210 (251)
Q Consensus 175 ~a~~~g~~~ivs~rsgEt----~d~~iadLAva~~~~~ik 210 (251)
+|+++|+.++|-.--+.. .-.+-+|+.+.+.+.++-
T Consensus 150 la~~~g~~livD~t~~~~~~~~~~~~g~Divv~S~tK~l~ 189 (369)
T cd00614 150 LAHEHGALLVVDNTFATPYLQRPLELGADIVVHSATKYIG 189 (369)
T ss_pred HHHHcCCEEEEECCCcchhcCChhhhCCcEEEeccceecc
Confidence 999999999886643221 112346888877776654
No 422
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=27.51 E-value=4e+02 Score=25.00 Aligned_cols=111 Identities=14% Similarity=0.154 Sum_probs=70.2
Q ss_pred HHhhhcCCceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEee-c-cccccHHHHHHH
Q 040341 95 RSFISDHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK-V-NQIGSVTESIEA 172 (251)
Q Consensus 95 ~~l~~~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK-~-nqiGtlte~l~~ 172 (251)
..++..=.-+.+.+|....-+..+.......|-.+..+ | +.+++.+++++..+ ...|.+- | |-.|.+.+.-++
T Consensus 92 ~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~~~~v--d--~~d~e~l~~~i~~~-tklV~le~p~Np~G~v~dl~~I 166 (391)
T TIGR01328 92 LTILKAGDHLISDECLYGCTFALLEHALTKFGIQVDFI--N--MAIPEEVKAHIKDN-TKIVYFETPANPTMKLIDMERV 166 (391)
T ss_pred HHHhCCCCEEEEecCcchHHHHHHHHHHhcCCeEEEEE--C--CCCHHHHHHhhccC-CeEEEEECCCCCCCcccCHHHH
Confidence 34444333566788877666777777666775444333 2 24788998888654 3444442 4 457888888889
Q ss_pred HHHHHHcCCcEEEecCCCCC----CchhHhhhhhhcccCccc
Q 040341 173 VKMSKRAGWGVMASHRSGET----EDTFIADLSVGLATGQIK 210 (251)
Q Consensus 173 ~~~a~~~g~~~ivs~rsgEt----~d~~iadLAva~~~~~ik 210 (251)
+++|+++|+.++|-.-.... .-..-+|+.+.+...++-
T Consensus 167 ~~la~~~gi~livD~a~a~~~~~~~~~~g~Divv~S~sK~lg 208 (391)
T TIGR01328 167 CRDAHSQGVKVIVDNTFATPMLTNPVALGVDVVVHSATKYIG 208 (391)
T ss_pred HHHHHHcCCEEEEECCCchhccCCchhcCCCEEEcccccccc
Confidence 99999999998886543321 112346777776666554
No 423
>PRK06290 aspartate aminotransferase; Provisional
Probab=27.50 E-value=5.3e+02 Score=24.29 Aligned_cols=95 Identities=17% Similarity=0.135 Sum_probs=58.3
Q ss_pred hhhHHHHHHHhhhc-CCceeecCCCCcccHHHHHHHHhhhCCceEEEc---ccccccCHHHHHHHHhccCcceeEee-cc
Q 040341 87 GDGLKNVYRSFISD-HPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVG---DDLLVTNPKRVEKAIKEKTCNALLLK-VN 161 (251)
Q Consensus 87 ~~elid~~~~l~~~-ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivg---Ddl~vtn~~~i~~~i~~~a~n~ilIK-~n 161 (251)
.++.+......+-+ =.-+.+++|-.. .+..+.+..|.++.-+- |+-+..+++.+++.+.. .+..+.+- ||
T Consensus 115 s~~al~~~~~~~~~~gd~Vlv~~P~y~----~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~-~~k~i~l~nP~ 189 (410)
T PRK06290 115 SKPALAMLPSCFINPGDVTLMTVPGYP----VTGTHTKYYGGEVYNLPLLEENNFLPDLDSIPKDIKE-KAKLLYLNYPN 189 (410)
T ss_pred HHHHHHHHHHHhCCCCCEEEEeCCCCc----cHHHHHHHcCCEEEEEecCCCcCCcCCHHHHHHhhcc-cceEEEEECCC
Confidence 45666665554433 237889999753 34455555655443332 22355688888887754 35566655 64
Q ss_pred ----ccccHHHHHHHHHHHHHcCCcEEEe
Q 040341 162 ----QIGSVTESIEAVKMSKRAGWGVMAS 186 (251)
Q Consensus 162 ----qiGtlte~l~~~~~a~~~g~~~ivs 186 (251)
++=+..+..+++++|++++..+++-
T Consensus 190 NPTG~v~s~e~l~~l~~la~~~~~~iI~D 218 (410)
T PRK06290 190 NPTGAVATKEFYEEVVDFAKENNIIVVQD 218 (410)
T ss_pred CCCCcCCCHHHHHHHHHHHHHcCeEEEEe
Confidence 3445566788889999998866543
No 424
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=27.35 E-value=4.6e+02 Score=23.53 Aligned_cols=97 Identities=20% Similarity=0.300 Sum_probs=55.4
Q ss_pred cChhhHHHHHHHhhhcC--C-ceeecCCCCcccHHHHHHHHhhhC--CceEE-------E--cccccccCHHHHHH---H
Q 040341 85 VSGDGLKNVYRSFISDH--P-IVSIEDPFDQDDWEHHAELTGKIG--RHVQI-------V--GDDLLVTNPKRVEK---A 147 (251)
Q Consensus 85 ~s~~elid~~~~l~~~y--p-I~~IEDP~~e~D~~~~~~l~~~lg--~~~~i-------v--gDdl~vtn~~~i~~---~ 147 (251)
...+.+++.+.+..+++ | |++|- ....+||..-++..+..| +-+.| . |.. +..+++.+.+ +
T Consensus 74 ~g~~~~~~~~~~~~~~~~~p~i~si~-g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~-~~~~~~~~~eiv~~ 151 (301)
T PRK07259 74 PGVDAFIEEELPWLEEFDTPIIANVA-GSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMA-FGTDPELAYEVVKA 151 (301)
T ss_pred cCHHHHHHHHHHHHhccCCcEEEEec-cCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccc-cccCHHHHHHHHHH
Confidence 34566666665544444 5 45662 233344444444444444 33433 1 222 4456665554 4
Q ss_pred HhccCcceeEeeccccccHHHHHHHHHHHHHcCCcEEE
Q 040341 148 IKEKTCNALLLKVNQIGSVTESIEAVKMSKRAGWGVMA 185 (251)
Q Consensus 148 i~~~a~n~ilIK~nqiGtlte~l~~~~~a~~~g~~~iv 185 (251)
+....--.|.+|++ .++++..++++.+.++|...++
T Consensus 152 vr~~~~~pv~vKl~--~~~~~~~~~a~~l~~~G~d~i~ 187 (301)
T PRK07259 152 VKEVVKVPVIVKLT--PNVTDIVEIAKAAEEAGADGLS 187 (301)
T ss_pred HHHhcCCCEEEEcC--CCchhHHHHHHHHHHcCCCEEE
Confidence 44333457889987 3778999999999999987543
No 425
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=27.20 E-value=1.6e+02 Score=27.36 Aligned_cols=70 Identities=4% Similarity=0.155 Sum_probs=36.1
Q ss_pred ccChhhHHHHHHHhhhcCCc--eeecC------C---CCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccC
Q 040341 84 KVSGDGLKNVYRSFISDHPI--VSIED------P---FDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKT 152 (251)
Q Consensus 84 ~~s~~elid~~~~l~~~ypI--~~IED------P---~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a 152 (251)
..+.+|++++.+.| ++.++ +.|-- | +..-+|+--+++.+.+ +++|++-- .+++++.++++++.+.
T Consensus 223 G~~~~e~~~i~~~l-~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~--~ipVi~~G-~i~~~~~a~~~l~~g~ 298 (337)
T PRK13523 223 GLTVQDYVQYAKWM-KEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIREHA--NIATGAVG-LITSGAQAEEILQNNR 298 (337)
T ss_pred CCCHHHHHHHHHHH-HHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHhhc--CCcEEEeC-CCCCHHHHHHHHHcCC
Confidence 45677777765553 54442 22211 1 1111344334555555 45544333 3567788888877776
Q ss_pred cceeE
Q 040341 153 CNALL 157 (251)
Q Consensus 153 ~n~il 157 (251)
++.|.
T Consensus 299 ~D~V~ 303 (337)
T PRK13523 299 ADLIF 303 (337)
T ss_pred CChHH
Confidence 66543
No 426
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=27.19 E-value=2e+02 Score=26.29 Aligned_cols=60 Identities=12% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHHhhhCCceEEE--cccccccCHHHHHHHHhccCcceeEeecccc---ccHHHHHHHHHHHHHcCCcE
Q 040341 119 AELTGKIGRHVQIV--GDDLLVTNPKRVEKAIKEKTCNALLLKVNQI---GSVTESIEAVKMSKRAGWGV 183 (251)
Q Consensus 119 ~~l~~~lg~~~~iv--gDdl~vtn~~~i~~~i~~~a~n~ilIK~nqi---Gtlte~l~~~~~a~~~g~~~ 183 (251)
..+.++. ++||+ +|. ..+.+.+.++++.| .++|.+--++. --+..|.+++++|+..|..|
T Consensus 67 ~~~a~~~--~VPValHLDH--~~~~e~i~~ai~~G-ftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gvsV 131 (284)
T PRK12737 67 EVAARKY--NIPLALHLDH--HEDLDDIKKKVRAG-IRSVMIDGSHLSFEENIAIVKEVVEFCHRYDASV 131 (284)
T ss_pred HHHHHHC--CCCEEEECCC--CCCHHHHHHHHHcC-CCeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEE
No 427
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=27.11 E-value=2.9e+02 Score=25.87 Aligned_cols=50 Identities=10% Similarity=0.112 Sum_probs=38.8
Q ss_pred EEcccccccCHHHHHHHHhccCcceeEeecccc---ccHHHHHHHHHHHHHcCCcE
Q 040341 131 IVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQI---GSVTESIEAVKMSKRAGWGV 183 (251)
Q Consensus 131 ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqi---Gtlte~l~~~~~a~~~g~~~ 183 (251)
|=+|+ .++.+.+.++++.+. ++|.|--+.. --+..|.+++++|+..|..|
T Consensus 90 lHLDH--g~~~e~i~~ai~~Gf-tSVMiD~S~lp~eeNI~~T~evv~~Ah~~GvsV 142 (321)
T PRK07084 90 LHLDH--GDSFELCKDCIDSGF-SSVMIDGSHLPYEENVALTKKVVEYAHQFDVTV 142 (321)
T ss_pred EECCC--CCCHHHHHHHHHcCC-CEEEeeCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 44776 478889999998875 7778776653 24667889999999999988
No 428
>smart00475 53EXOc 5'-3' exonuclease.
Probab=27.04 E-value=2.8e+02 Score=24.83 Aligned_cols=90 Identities=22% Similarity=0.339 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHhcCCcc-ceeeeeehhhhcccccCCcce-eecCCCCCCCCCCccChhhH---HHHHHHhhhcCCceee
Q 040341 32 YEGFELLKTAIAKGGYIG-KIVIGMDVAASEFYDSKDKTY-DLNFKEENNDGSQKVSGDGL---KNVYRSFISDHPIVSI 106 (251)
Q Consensus 32 eeal~~i~~Ai~~aGy~~-kI~iglD~Aase~~~~~~g~Y-~l~~~~~~~d~~~~~s~~el---id~~~~l~~~ypI~~I 106 (251)
.-.+..+...++. +++ .|.++.|-....| +. ..| + +| +|+..+++++ +++.+++++..+|..|
T Consensus 34 ~g~~~~l~~l~~~--~~p~~~~~~fD~~~~~~-R~--~l~p~--YK-----a~R~~~pe~L~~q~~~~~~~l~~~gi~~i 101 (259)
T smart00475 34 YGFLRMLLKLIKE--EKPTYVAVVFDAKGKTF-RH--ELYPE--YK-----ANRPKTPDELLEQIPLIKELLDALGIPVL 101 (259)
T ss_pred HHHHHHHHHHHHH--cCCCeEEEEEeCCCCcc-cc--chhHH--HH-----hCCCCCCHHHHHHHHHHHHHHHHCCCCEE
Confidence 3345556665644 455 5888999654443 32 234 2 22 4566667665 4677777788999989
Q ss_pred cCC-CCcccHHHHHHHHhh---hCCceEEEccc
Q 040341 107 EDP-FDQDDWEHHAELTGK---IGRHVQIVGDD 135 (251)
Q Consensus 107 EDP-~~e~D~~~~~~l~~~---lg~~~~ivgDd 135 (251)
+-| +-.||.-+. |.++ .|..+.||..|
T Consensus 102 ~~~g~EADD~iat--la~~~~~~g~~~~IvS~D 132 (259)
T smart00475 102 EVEGYEADDVIAT--LAKKAEAEGYEVRIVSGD 132 (259)
T ss_pred eeCCcCHHHHHHH--HHHHHHhCCCeEEEEeCC
Confidence 855 566676553 3332 24456666555
No 429
>KOG4021 consensus Mitochondrial ribosomal protein S18b [Translation, ribosomal structure and biogenesis]
Probab=27.04 E-value=69 Score=28.00 Aligned_cols=57 Identities=21% Similarity=0.282 Sum_probs=41.6
Q ss_pred hCCceEEEcccccc---cCHHHHHHHHhccCcceeEeeccccc----cHHHHHHHHHHHHHcCCcE
Q 040341 125 IGRHVQIVGDDLLV---TNPKRVEKAIKEKTCNALLLKVNQIG----SVTESIEAVKMSKRAGWGV 183 (251)
Q Consensus 125 lg~~~~ivgDdl~v---tn~~~i~~~i~~~a~n~ilIK~nqiG----tlte~l~~~~~a~~~g~~~ 183 (251)
+|+.|+||=|+-.+ .|++.|++.+..+..+.|-+- ..| .-+....++.-|+++|.-+
T Consensus 107 ~gnpCPICRDeyL~~DyRN~~LlEQF~~~htg~~i~y~--ktGlC~kqh~rL~~a~qkArdhG~lt 170 (239)
T KOG4021|consen 107 LGNPCPICRDEYLYFDYRNPGLLEQFLADHTGQPIDYL--KTGLCRKQHTRLRAALQKARDHGTLT 170 (239)
T ss_pred cCCCCCccccceEEEeccCHHHHHHHhccCCCCchhhh--hcchHHHHHHHHHHHHHHhhhcCeEE
Confidence 58899999999433 699999999988887665432 333 2345666777889988754
No 430
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=27.01 E-value=2.2e+02 Score=25.93 Aligned_cols=114 Identities=18% Similarity=0.206 Sum_probs=63.1
Q ss_pred ChhhHHHHHHHhhhcCCceeecCCCCc--ccHHHHHHHHhhhCCceEEEcccc-cccCHHHHHHHHhccC-----cceeE
Q 040341 86 SGDGLKNVYRSFISDHPIVSIEDPFDQ--DDWEHHAELTGKIGRHVQIVGDDL-LVTNPKRVEKAIKEKT-----CNALL 157 (251)
Q Consensus 86 s~~elid~~~~l~~~ypI~~IEDP~~e--~D~~~~~~l~~~lg~~~~ivgDdl-~vtn~~~i~~~i~~~a-----~n~il 157 (251)
|..+++- +.-++..+.-+...++=+- +.-.+.+.+ .|.++.-+.++- -.-++++|+++++... ...|.
T Consensus 54 T~An~~a-l~~~~~~~~~vi~~~~aHi~~~E~ga~~~~---~G~~~~~l~~~~~G~l~~~~l~~~~~~~~~h~~~~~~v~ 129 (290)
T PF01212_consen 54 TMANQLA-LRAHLRPGESVICADTAHIHFDETGAIEEL---SGAKLIPLPSDDDGKLTPEDLEAAIEEHGAHHPQPAVVS 129 (290)
T ss_dssp HHHHHHH-HHHHHHTTEEEEEETTEHHHHSSTTHHHHH---TTCEEEEEBECTGTBB-HHHHHHHHHHHTGTSGGEEEEE
T ss_pred ChHHHHH-HHHHHhcCCceeccccceeeeeccchhhHh---cCcEEEECCCcccCCCCHHHHHHHhhhccccCCCccEEE
Confidence 3344444 5556667775555555110 001222333 355555555443 3458999999988733 23444
Q ss_pred ee-cccc--cc---HHHHHHHHHHHHHcCCcEEEec-CCCC---CCchhHhhhhhh
Q 040341 158 LK-VNQI--GS---VTESIEAVKMSKRAGWGVMASH-RSGE---TEDTFIADLSVG 203 (251)
Q Consensus 158 IK-~nqi--Gt---lte~l~~~~~a~~~g~~~ivs~-rsgE---t~d~~iadLAva 203 (251)
|- ++.. |+ +-|.-++.++|+++|+.+.+-. |-.+ +.+..+.+++-+
T Consensus 130 le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGARl~~a~~~~~~~~~e~~~~ 185 (290)
T PF01212_consen 130 LENTTELAGGTVYSLEELRAISELAREHGLPLHMDGARLANAAAALGVSLAEIAAG 185 (290)
T ss_dssp EESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEETTHHHHHCHHHHHHHHHHTT
T ss_pred EEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEehhhHHHhhhcccccHHHHhhh
Confidence 54 2333 44 5689999999999999997755 5333 234455666643
No 431
>PRK14012 cysteine desulfurase; Provisional
Probab=26.88 E-value=3.7e+02 Score=24.98 Aligned_cols=84 Identities=13% Similarity=0.177 Sum_probs=53.5
Q ss_pred ceeecCCCCcccHHHHHHHHhhhCCceEEE-cccccccCHHHHHHHHhccCcceeEee-c-cccccHHHHHHHHHHHHHc
Q 040341 103 IVSIEDPFDQDDWEHHAELTGKIGRHVQIV-GDDLLVTNPKRVEKAIKEKTCNALLLK-V-NQIGSVTESIEAVKMSKRA 179 (251)
Q Consensus 103 I~~IEDP~~e~D~~~~~~l~~~lg~~~~iv-gDdl~vtn~~~i~~~i~~~a~n~ilIK-~-nqiGtlte~l~~~~~a~~~ 179 (251)
-+.+.++-+..-...|..+. +.|-++..+ -|+-..-+++.+++++..+. ..+.+- + |-.|.+...-++.++|+++
T Consensus 96 ~Vi~~~~~~~s~~~~~~~~~-~~g~~~~~v~~~~~g~~d~~~l~~~i~~~t-~lv~~~~~~n~tG~~~~~~~I~~la~~~ 173 (404)
T PRK14012 96 HIITSKTEHKAVLDTCRQLE-REGFEVTYLDPQSNGIIDLEKLEAAMRDDT-ILVSIMHVNNEIGVIQDIAAIGEICRER 173 (404)
T ss_pred EEEEecCccHHHHHHHHHHH-hCCCEEEEEccCCCCcCCHHHHHHhcCCCC-EEEEEECcCCCccchhhHHHHHHHHHHc
Confidence 55566665555566676664 335455444 23323447899999886543 233332 2 4468888888889999999
Q ss_pred CCcEEEecC
Q 040341 180 GWGVMASHR 188 (251)
Q Consensus 180 g~~~ivs~r 188 (251)
|+.+++-.-
T Consensus 174 g~~vivD~a 182 (404)
T PRK14012 174 GIIFHVDAA 182 (404)
T ss_pred CCEEEEEcc
Confidence 998877553
No 432
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=26.84 E-value=1.1e+02 Score=27.98 Aligned_cols=96 Identities=15% Similarity=0.233 Sum_probs=59.1
Q ss_pred CCceEEEcccccccCHHHHHH-HH--------hccCcceeEeeccc---cccHHHHHHHHHHHHHcCCcEEEecCCCCCC
Q 040341 126 GRHVQIVGDDLLVTNPKRVEK-AI--------KEKTCNALLLKVNQ---IGSVTESIEAVKMSKRAGWGVMASHRSGETE 193 (251)
Q Consensus 126 g~~~~ivgDdl~vtn~~~i~~-~i--------~~~a~n~ilIK~nq---iGtlte~l~~~~~a~~~g~~~ivs~rsgEt~ 193 (251)
+.++.|++=-=+.-..+.+++ |+ +.+-.++++||-|. .|++.++++.++........+-||.++-|-
T Consensus 122 ~~~~~i~~TRKt~Pg~R~~~k~Av~~GGg~~HR~~L~d~vlikdnHi~~~g~~~~~v~~aR~~~~~~~~Igvsv~tlee- 200 (277)
T PRK08072 122 DSHIRICDTRKTTPGLRMFDKYAVVCGGGFNHRFGLYDGVMIKDNHIAFCGSITKAVTSVREKLGHMVKIEVETETEEQ- 200 (277)
T ss_pred CCCeEEEecCCCCcchhHHHHHHHHhcCCcccCCCCCceEEEchhHHHhhCCHHHHHHHHHHhCCCCCEEEEEeCCHHH-
Confidence 446666544432233444443 43 34567789999997 688888777766554445556777764433
Q ss_pred chhHhhhhhhcccCccccCCCCchhHHHHhhHHH
Q 040341 194 DTFIADLSVGLATGQIKTGAPCRSERLAKYNQLL 227 (251)
Q Consensus 194 d~~iadLAva~~~~~ik~G~~~r~Er~aKyN~ll 227 (251)
+.-|...++.+|-... ...|.+.+.-+++
T Consensus 201 ----a~~A~~~gaDyI~lD~-~~~e~l~~~~~~~ 229 (277)
T PRK08072 201 ----VREAVAAGADIIMFDN-RTPDEIREFVKLV 229 (277)
T ss_pred ----HHHHHHcCCCEEEECC-CCHHHHHHHHHhc
Confidence 4456678888888753 4556666555544
No 433
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=26.67 E-value=4.6e+02 Score=24.54 Aligned_cols=111 Identities=13% Similarity=0.139 Sum_probs=67.1
Q ss_pred HHhhhcCCceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEe-ec-cccccHHHHHHH
Q 040341 95 RSFISDHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLL-KV-NQIGSVTESIEA 172 (251)
Q Consensus 95 ~~l~~~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilI-K~-nqiGtlte~l~~ 172 (251)
..++..=.-+.+.+|....-+..|....++.|-++..+ | +.+++.+++++..+ ...|.| -| |-.|.+...-++
T Consensus 94 ~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~v~~v--d--~~d~~~l~~~i~~~-tklV~ie~p~NptG~v~dl~~I 168 (390)
T PRK08133 94 MALLQAGDHVVSSRSLFGSTVSLFEKIFARFGIETTFV--D--LTDLDAWRAAVRPN-TKLFFLETPSNPLTELADIAAL 168 (390)
T ss_pred HHHhCCCCEEEEccCcchhHHHHHHHHHHHcCcEEEEE--C--CCCHHHHHHhcCcC-CeEEEEECCCCCCCCcCCHHHH
Confidence 33444333455677766555556666666676554433 2 24788888887643 445554 35 557888888889
Q ss_pred HHHHHHcCCcEEEecCC--CC--CCchhHhhhhhhcccCccc
Q 040341 173 VKMSKRAGWGVMASHRS--GE--TEDTFIADLSVGLATGQIK 210 (251)
Q Consensus 173 ~~~a~~~g~~~ivs~rs--gE--t~d~~iadLAva~~~~~ik 210 (251)
+++|+++|+.+++-.-- +- ..-..-+|+.+.+....+-
T Consensus 169 ~~la~~~gi~livD~t~~~~~~~~pl~~g~Divv~S~sK~~~ 210 (390)
T PRK08133 169 AEIAHAAGALLVVDNCFCTPALQQPLKLGADVVIHSATKYLD 210 (390)
T ss_pred HHHHHHcCCEEEEECCCcccccCCchhhCCcEEEeecceeec
Confidence 99999999988875521 11 1112235777777665553
No 434
>PLN02766 coniferyl-aldehyde dehydrogenase
Probab=26.60 E-value=71 Score=31.32 Aligned_cols=73 Identities=11% Similarity=0.083 Sum_probs=45.0
Q ss_pred HHHhccCcceeEeeccccccHHHHHHHHHHHHHcCCcE----EEecCCCCCCchhHhhhhhhcccCccccCCCCchhHHH
Q 040341 146 KAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAGWGV----MASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLA 221 (251)
Q Consensus 146 ~~i~~~a~n~ilIK~nqiGtlte~l~~~~~a~~~g~~~----ivs~rsgEt~d~~iadLAva~~~~~ik~G~~~r~Er~a 221 (251)
-+..+-+.|++++||+....++ +..+.++.+++|++- +|.....+..+..+.|-.|. .-..+|++.-+.+++
T Consensus 179 ~~~ALaaGN~VVlKPs~~tp~~-~~~l~~~~~~aGlP~gvv~~v~g~~~~~~~~L~~~p~v~---~V~FTGS~~~G~~i~ 254 (501)
T PLN02766 179 VAPALAAGCTMVVKPAEQTPLS-ALFYAHLAKLAGVPDGVINVVTGFGPTAGAAIASHMDVD---KVSFTGSTEVGRKIM 254 (501)
T ss_pred HHHHHHcCCEEEEeCCCCchHH-HHHHHHHHHhcCCCcCcEEEEecCchHHHHHHhcCCCCC---EEEEECcHHHHHHHH
Confidence 3455669999999999876655 457888899998763 44332222222222222221 234788888777776
Q ss_pred H
Q 040341 222 K 222 (251)
Q Consensus 222 K 222 (251)
|
T Consensus 255 ~ 255 (501)
T PLN02766 255 Q 255 (501)
T ss_pred H
Confidence 5
No 435
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=26.44 E-value=1.1e+02 Score=27.55 Aligned_cols=71 Identities=17% Similarity=0.169 Sum_probs=49.2
Q ss_pred ccCcceeEeeccc---cccHHHHHHHHHHHHHcCCcEEEecCCCCCCchhHhhhhhhcccCccccCCCCchhHHHHhhHH
Q 040341 150 EKTCNALLLKVNQ---IGSVTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQL 226 (251)
Q Consensus 150 ~~a~n~ilIK~nq---iGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d~~iadLAva~~~~~ik~G~~~r~Er~aKyN~l 226 (251)
.+-.++++||.|. .|++.++++.++..-..+..+-|+.++-|- +.-|...++.+|-.|.+. .|-+.+.-+.
T Consensus 145 ~~L~d~ilikdnHi~~~G~~~~av~~~r~~~~~~~~Igvev~t~ee-----a~~A~~~gaDyI~ld~~~-~e~lk~~v~~ 218 (265)
T TIGR00078 145 LGLSDAVMIKDNHIAAAGSIEKAVKRARAAAPFALKIEVEVESLEE-----AEEAAEAGADIIMLDNMK-PEEIKEAVQL 218 (265)
T ss_pred CCcccceeeeccHHHHhCCHHHHHHHHHHhCCCCCeEEEEeCCHHH-----HHHHHHcCCCEEEECCCC-HHHHHHHHHH
Confidence 4566689999997 477777776666544445667788875543 667788889999998774 4555554443
No 436
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=26.44 E-value=2.7e+02 Score=25.71 Aligned_cols=93 Identities=14% Similarity=0.095 Sum_probs=65.7
Q ss_pred hhHHHHHHHhhhcCCceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeeccccccHH
Q 040341 88 DGLKNVYRSFISDHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVT 167 (251)
Q Consensus 88 ~elid~~~~l~~~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqiGtlt 167 (251)
+|=++++.+.-++|++-.+=|=...++.+--++. . .+.=+|=- .+.|.+.|+.+-+ ....||||=+|..++.
T Consensus 73 eeGL~iL~~vk~~~glpvvTeV~~~~q~~~vae~---~--DilQIgAr-~~rqtdLL~a~~~--tgkpV~lKkGq~~t~~ 144 (290)
T PLN03033 73 AEGLKILEKVKVAYDLPIVTDVHESSQCEAVGKV---A--DIIQIPAF-LCRQTDLLVAAAK--TGKIINIKKGQFCAPS 144 (290)
T ss_pred HHHHHHHHHHHHHHCCceEEeeCCHHHHHHHHhh---C--cEEeeCcH-HHHHHHHHHHHHc--cCCeEEeCCCCCCCHH
Confidence 4557888886678887666666665555544433 2 23333443 4677777776644 5689999999999999
Q ss_pred HHHHHHHHHHHcCCc-EEEecC
Q 040341 168 ESIEAVKMSKRAGWG-VMASHR 188 (251)
Q Consensus 168 e~l~~~~~a~~~g~~-~ivs~r 188 (251)
|.+.+++...+.|-. +|+.+|
T Consensus 145 e~~~aaeki~~~GN~~viLcER 166 (290)
T PLN03033 145 VMRNSAEKVRLAGNPNVMVCER 166 (290)
T ss_pred HHHHHHHHHHHcCCCcEEEEeC
Confidence 999999999888765 666666
No 437
>PF06301 Lambda_Kil: Bacteriophage lambda Kil protein; InterPro: IPR010444 This family consists of several Bacteriophage lambda Kil protein like sequences. A cessation of division, followed by one or two fairly synchronous cell divisions in Escherichia coli is due to two genetically separable events: a temporary block of cell division and, at the same time, a block to the initiation of new rounds of DNA replication. The cell division block is a result of the transient expression of the lambda kil gene []. The lambda kil gene has been shown to be responsible for premature lysis on the addition of chloramphenicol between 15 and 20 min after thermal induction of a lambda prophage []. Induction of a lambda prophage causes the death of the host cell even in the absence of phage replication and lytic functions due to expression of functions from the lambda p(L) operon. The kil gene causes cell death and filamentation [].
Probab=26.27 E-value=33 Score=22.52 Aligned_cols=29 Identities=34% Similarity=0.300 Sum_probs=21.9
Q ss_pred HHHHhcCCCCCCCCCcccccCCCCCcHHHHHHHHHHH
Q 040341 6 VIKKKYGQDATNVGDEGGFAPNIQESYEGFELLKTAI 42 (251)
Q Consensus 6 ~l~~~~g~~~~~vgdeGGfap~~~~~eeal~~i~~Ai 42 (251)
..+.|. ..++-+||++.| .||.+.+..||
T Consensus 7 aaQsK~-~IA~flGD~~mw-------~eA~e~~k~ai 35 (43)
T PF06301_consen 7 AAQSKA-AIARFLGDEKMW-------SEANEAMKIAI 35 (43)
T ss_pred HHHHHH-HHHHHHccHHHH-------HHHHHHHHHHh
Confidence 344443 366778999999 78888888887
No 438
>PRK10090 aldehyde dehydrogenase A; Provisional
Probab=26.18 E-value=88 Score=29.84 Aligned_cols=72 Identities=17% Similarity=0.173 Sum_probs=43.7
Q ss_pred HHhccCcceeEeeccccccHHHHHHHHHHHHHcCCcE----EEecCCCCCCchhHhhhhhhcccCccccCCCCchhHHHH
Q 040341 147 AIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAGWGV----MASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAK 222 (251)
Q Consensus 147 ~i~~~a~n~ilIK~nqiGtlte~l~~~~~a~~~g~~~----ivs~rsgEt~d~~iadLAva~~~~~ik~G~~~r~Er~aK 222 (251)
+..+-+.|++++||+.....+ +..+.++.+++|++- +|.....+..+..+.|-.|. .-..+|++.-+.++++
T Consensus 93 ~~ALaaGN~VvlKps~~~p~~-~~~l~~~~~~aglP~gv~~~v~g~~~~~~~~l~~~~~v~---~V~ftGs~~~g~~v~~ 168 (409)
T PRK10090 93 APALLTGNTIVIKPSEFTPNN-AIAFAKIVDEIGLPKGVFNLVLGRGETVGQELAGNPKVA---MVSMTGSVSAGEKIMA 168 (409)
T ss_pred HHHHHcCCEEEEECCCcChHH-HHHHHHHHHHcCCCcccEEEEeCCChhHHHHHhcCCCcC---EEEEECCHHHHHHHHH
Confidence 455668999999999865555 456788888988873 44332222222222222222 2456787776766653
No 439
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=26.06 E-value=2.6e+02 Score=21.98 Aligned_cols=41 Identities=15% Similarity=0.227 Sum_probs=32.6
Q ss_pred CcceeEeeccccccHHHHHHHHHHHHHcCCcE--EEecCCCCC
Q 040341 152 TCNALLLKVNQIGSVTESIEAVKMSKRAGWGV--MASHRSGET 192 (251)
Q Consensus 152 a~n~ilIK~nqiGtlte~l~~~~~a~~~g~~~--ivs~rsgEt 192 (251)
.+.++++-.++.|++..++..++.++..|+.+ ++..+....
T Consensus 68 ~~~vllV~~~~~g~i~~a~~~~~~l~~~g~~i~gvi~N~~~~~ 110 (134)
T cd03109 68 NLPAILVTSAGLGSINHAFLTIEAARIKGIILNGVLGNVIVEK 110 (134)
T ss_pred CCCEEEEEcCCCCcHhHHHHHHHHHHhcCCceeEEEEccCCCc
Confidence 44577888888899999999999999999887 676664443
No 440
>TIGR03250 PhnAcAld_DH putative phosphonoacetaldehyde dehydrogenase. It seems reasonably certain then, that this enzyme catalyzes the NAD-dependent oxidation of phosphonoacetaldehyde to phosphonoacetate, bridging the metabolic gap between PhnW and PhnA. We propose the name phosphonoacetaldehyde dehydrogenase and the gene symbol PhnY for this enzyme.
Probab=26.03 E-value=82 Score=30.56 Aligned_cols=73 Identities=18% Similarity=0.149 Sum_probs=42.9
Q ss_pred HHHhccCcceeEeeccccccHHHHHHHHHHHHHcCCcE----EEecCCCCCCchhHhhhhhhcccCccccCCCCchhHHH
Q 040341 146 KAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAGWGV----MASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLA 221 (251)
Q Consensus 146 ~~i~~~a~n~ilIK~nqiGtlte~l~~~~~a~~~g~~~----ivs~rsgEt~d~~iadLAva~~~~~ik~G~~~r~Er~a 221 (251)
-+..+.+.|++++||+....++ +..+.++.+++|++- +|.....++....+.|-.|. .-..+|++.-+..++
T Consensus 160 ~~~ALaaGN~VvlKps~~~p~~-~~~l~~~~~~aGlP~gvv~~v~g~~~~~~~~l~~~~~v~---~v~fTGs~~~g~~i~ 235 (472)
T TIGR03250 160 IAPAIATNNRMVVKPSEKTPLS-ALYLADILYEAGLPPQMLQVVTGDPREIADELITNPHVD---LVTFTGGVAIGKYIA 235 (472)
T ss_pred HHHHHHcCCEEEEECCCcchHH-HHHHHHHHHHcCCCcccEEEEecCchHHHHHHhcCCCCC---EEEEECcHHHHHHHH
Confidence 3455679999999999876655 556788889998872 33222122222222222221 235677766666555
Q ss_pred H
Q 040341 222 K 222 (251)
Q Consensus 222 K 222 (251)
+
T Consensus 236 ~ 236 (472)
T TIGR03250 236 A 236 (472)
T ss_pred H
Confidence 4
No 441
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=25.92 E-value=99 Score=25.44 Aligned_cols=51 Identities=16% Similarity=0.273 Sum_probs=36.7
Q ss_pred ceeEeeccccccHHHHHHHHHHHHHcCCcEEEecCCCCCCchhHhhhhhhc
Q 040341 154 NALLLKVNQIGSVTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGL 204 (251)
Q Consensus 154 n~ilIK~nqiGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d~~iadLAva~ 204 (251)
+-++|=.++-|.=.+++++++.|+++|.+++.=.....+.-.-.+|..+-+
T Consensus 102 ~Dv~I~iS~SG~t~~~i~~~~~ak~~Ga~vI~IT~~~~s~La~~aD~~l~~ 152 (177)
T cd05006 102 GDVLIGISTSGNSPNVLKALEAAKERGMKTIALTGRDGGKLLELADIEIHV 152 (177)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCCEEEEe
Confidence 445566788888899999999999999988665555555545555555433
No 442
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=25.87 E-value=52 Score=26.20 Aligned_cols=44 Identities=20% Similarity=0.299 Sum_probs=29.8
Q ss_pred HHHHHHHhccCcceeEeeccccccHHHHHHHHHHHHHc---CCcEEEec
Q 040341 142 KRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRA---GWGVMASH 187 (251)
Q Consensus 142 ~~i~~~i~~~a~n~ilIK~nqiGtlte~l~~~~~a~~~---g~~~ivs~ 187 (251)
+|-...++ .++++++=|+=+||+.|.++++.+.+-. ..++++=.
T Consensus 45 ~Rk~~m~~--~sda~I~lPGG~GTl~El~~~~~~~~l~~~~~~Piil~~ 91 (133)
T PF03641_consen 45 ERKEIMIE--SSDAFIALPGGIGTLDELFEALTLMQLGRHNKVPIILLN 91 (133)
T ss_dssp HHHHHHHH--HESEEEEES-SHHHHHHHHHHHHHHHTTSSTS-EEEEEE
T ss_pred HHHHHHHH--hCCEEEEEecCCchHHHHHHHHHHHhhccccCCCEEEeC
Confidence 44444443 5899999999999999999999876543 22555544
No 443
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=25.83 E-value=3.8e+02 Score=23.67 Aligned_cols=58 Identities=5% Similarity=0.058 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHcCCcEEEec-CCCC-----CCchhHhhhhhhcccCccccCCCCchhHHHHhhH
Q 040341 168 ESIEAVKMSKRAGWGVMASH-RSGE-----TEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQ 225 (251)
Q Consensus 168 e~l~~~~~a~~~g~~~ivs~-rsgE-----t~d~~iadLAva~~~~~ik~G~~~r~Er~aKyN~ 225 (251)
...+.++.+.+.|..-++=. -+.+ ..-..+..++-......+-.|+.+..|.+.+..+
T Consensus 150 ~~~~~~~~~~~~g~~~ii~tdI~~dGt~~G~d~~l~~~l~~~~~~pviasGGv~s~eDl~~l~~ 213 (243)
T TIGR01919 150 DLEVLERLLDSGGCSRVVVTDSKKDGLSGGPNELLLEVVAARTDAIVAASGGSSLLDDLRAIKY 213 (243)
T ss_pred cHHHHHHHHHhCCCCEEEEEecCCcccCCCcCHHHHHHHHhhCCCCEEEECCcCCHHHHHHHHh
Confidence 45677777788877554432 1111 2224555666556678888888888787765543
No 444
>TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria.
Probab=25.74 E-value=4.8e+02 Score=26.25 Aligned_cols=118 Identities=17% Similarity=0.165 Sum_probs=68.0
Q ss_pred CCCccChhhHHHHHHHhhhcCCceeecCCC---CcccHHHHHHHHhh--hCCceEEEcccccccC-HHHHHHHHhc--cC
Q 040341 81 GSQKVSGDGLKNVYRSFISDHPIVSIEDPF---DQDDWEHHAELTGK--IGRHVQIVGDDLLVTN-PKRVEKAIKE--KT 152 (251)
Q Consensus 81 ~~~~~s~~elid~~~~l~~~ypI~~IEDP~---~e~D~~~~~~l~~~--lg~~~~ivgDdl~vtn-~~~i~~~i~~--~a 152 (251)
++..+|.+|=++++.. +++.+|-.||=.| .+.|.+....+.+. +.+.+.+++ ++.+ ..+++++++. ++
T Consensus 41 ~g~~~s~e~Ki~ia~~-L~~~Gvd~IE~Gfp~~s~~D~e~v~~i~~~~l~~~~~~i~a---l~~~~~~did~a~~a~~~~ 116 (564)
T TIGR00970 41 LPDPMSPARKRRYFDL-LVRIGFKEIEVGFPSASQTDFDFVREIIEQGAIPDDVTIQV---LTQSREELIERTFEALSGA 116 (564)
T ss_pred CCCCCCHHHHHHHHHH-HHHcCCCEEEEeCCCCCHHHHHHHHHHHHhcCCCCCcEEEE---EcCCchhhHHHHHHHhcCC
Confidence 3457999998898877 5999999999655 46777777777655 112344442 3444 3457777665 33
Q ss_pred c---ceeEeecc-------ccccHHHHH----HHHHHHHHcCC----------cEEEecCC-CCCCchhHhhhhh
Q 040341 153 C---NALLLKVN-------QIGSVTESI----EAVKMSKRAGW----------GVMASHRS-GETEDTFIADLSV 202 (251)
Q Consensus 153 ~---n~ilIK~n-------qiGtlte~l----~~~~~a~~~g~----------~~ivs~rs-gEt~d~~iadLAv 202 (251)
. =.+.++.+ .=-+..|.+ +++++|++++. .|.++... ..++-+|+.+++-
T Consensus 117 ~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~~~~~~~~~~~~~~v~f~~Ed~~r~d~~~l~~~~~ 191 (564)
T TIGR00970 117 KRATVHFYNATSILFREVVFRASRAEVQAIATDGTKLVRKCTKQAAKYPGTQWRFEYSPESFSDTELEFAKEVCE 191 (564)
T ss_pred CCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccccccceEEEEEecccCCCCCHHHHHHHHH
Confidence 2 11333221 113455555 46667888876 34444321 1266667555543
No 445
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=25.73 E-value=3.1e+02 Score=24.62 Aligned_cols=70 Identities=14% Similarity=0.203 Sum_probs=45.7
Q ss_pred HHHHHhhhCCceEEE-cccccccCHHHHHHHHhccCcceeEee-c-cccccHHHHHHHHHHHHHcCCcEEEec
Q 040341 118 HAELTGKIGRHVQIV-GDDLLVTNPKRVEKAIKEKTCNALLLK-V-NQIGSVTESIEAVKMSKRAGWGVMASH 187 (251)
Q Consensus 118 ~~~l~~~lg~~~~iv-gDdl~vtn~~~i~~~i~~~a~n~ilIK-~-nqiGtlte~l~~~~~a~~~g~~~ivs~ 187 (251)
|....+..|-++..+ .|+-...+++.+++.+.......+.+- + |-.|++...-++.++|+++|+.+++-.
T Consensus 89 ~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~~~~~~v~i~~~~~~~G~~~~~~~i~~~a~~~~~~li~D~ 161 (356)
T cd06451 89 WADMAERYGADVDVVEKPWGEAVSPEEIAEALEQHDIKAVTLTHNETSTGVLNPLEGIGALAKKHDALLIVDA 161 (356)
T ss_pred HHHHHHHhCCCeEEeecCCCCCCCHHHHHHHHhccCCCEEEEeccCCCcccccCHHHHHHHHHhcCCEEEEee
Confidence 555556666555554 232234578999998875334455553 3 347887777778889999998887654
No 446
>PLN02428 lipoic acid synthase
Probab=25.72 E-value=5.7e+02 Score=24.13 Aligned_cols=137 Identities=18% Similarity=0.276 Sum_probs=73.2
Q ss_pred hhhHHHHHHHhhhcCCceeecC--CCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeeccccc
Q 040341 87 GDGLKNVYRSFISDHPIVSIED--PFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIG 164 (251)
Q Consensus 87 ~~elid~~~~l~~~ypI~~IED--P~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqiG 164 (251)
.+.+.+.+..+-+.+|-+-||- |=.-.|.+....|.+ .|..+ +.--+- | .+++.+.+.. .-.
T Consensus 165 a~~~~elir~Ir~~~P~i~Ie~L~pdf~~d~elL~~L~e-AG~d~--i~hnlE-T-v~rL~~~Ir~-----------~~~ 228 (349)
T PLN02428 165 SGHFAETVRRLKQLKPEILVEALVPDFRGDLGAVETVAT-SGLDV--FAHNIE-T-VERLQRIVRD-----------PRA 228 (349)
T ss_pred HHHHHHHHHHHHHhCCCcEEEEeCccccCCHHHHHHHHH-cCCCE--EccCcc-C-cHHHHHHhcC-----------CCC
Confidence 3455565555444567444443 211114455555543 34333 221111 2 2345543321 235
Q ss_pred cHHHHHHHHHHHHHc--CCcE----EEecCCCCCCchhHhhh--hhhcccCccccCCCCchhH----------HHHhhHH
Q 040341 165 SVTESIEAVKMSKRA--GWGV----MASHRSGETEDTFIADL--SVGLATGQIKTGAPCRSER----------LAKYNQL 226 (251)
Q Consensus 165 tlte~l~~~~~a~~~--g~~~----ivs~rsgEt~d~~iadL--Ava~~~~~ik~G~~~r~Er----------~aKyN~l 226 (251)
+..+.+++++.|++. |+.+ |||. |||+++++..+ ...++..++-.|-..+..+ -..+-++
T Consensus 229 sye~~Le~L~~ak~~~pGi~tkSg~MvGL--GET~Edv~e~l~~Lrelgvd~vtigqyL~Ps~~h~~v~~~v~p~~f~~~ 306 (349)
T PLN02428 229 GYKQSLDVLKHAKESKPGLLTKTSIMLGL--GETDEEVVQTMEDLRAAGVDVVTFGQYLRPTKRHLPVKEYVTPEKFEFW 306 (349)
T ss_pred CHHHHHHHHHHHHHhCCCCeEEEeEEEec--CCCHHHHHHHHHHHHHcCCCEEeeccccCCCcceeeeecccCHHHHHHH
Confidence 888999999999999 7765 8888 89988766544 4455555555544322221 2344555
Q ss_pred HHHHHHhCCCccccC
Q 040341 227 LRIEEELGPAAIYAG 241 (251)
Q Consensus 227 lrie~~l~~~~~~~~ 241 (251)
=++..++|=..+..|
T Consensus 307 ~~~~~~~gf~~v~sg 321 (349)
T PLN02428 307 REYGEEMGFRYVASG 321 (349)
T ss_pred HHHHHHcCCceEEec
Confidence 556667764444444
No 447
>PLN02981 glucosamine:fructose-6-phosphate aminotransferase
Probab=25.52 E-value=78 Score=32.44 Aligned_cols=50 Identities=14% Similarity=0.121 Sum_probs=35.5
Q ss_pred eEeeccccccHHHHHHHHHHHHHcCCcEEEecCCCCCCchhHhhhhhhcc
Q 040341 156 LLLKVNQIGSVTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLA 205 (251)
Q Consensus 156 ilIK~nqiGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d~~iadLAva~~ 205 (251)
++|=++|-|.-.+++++++.|++.|..++.=....++.-...+|..+-+.
T Consensus 413 lvI~ISqSGeT~eti~Al~~Ak~~Ga~~IaITn~~~S~La~~ad~~i~~~ 462 (680)
T PLN02981 413 TAVFVSQSGETADTLRALEYAKENGALCVGITNTVGSAISRGTHCGVHIN 462 (680)
T ss_pred eEEEEeCCcCCHHHHHHHHHHHHCCCcEEEEECCCCChhHhccCeeEEec
Confidence 44448999999999999999999998875444445554444555544443
No 448
>cd07151 ALDH_HBenzADH NADP+-dependent p-hydroxybenzaldehyde dehydrogenase-like. NADP+-dependent, p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH) which catalyzes oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic acid and other related sequences are included in this CD.
Probab=25.48 E-value=91 Score=30.06 Aligned_cols=37 Identities=24% Similarity=0.156 Sum_probs=29.2
Q ss_pred HHHhccCcceeEeeccccccHHHHHHHHHHHHHcCCc
Q 040341 146 KAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAGWG 182 (251)
Q Consensus 146 ~~i~~~a~n~ilIK~nqiGtlte~l~~~~~a~~~g~~ 182 (251)
-+..+-+.|++++||+.....+-+..+.++++++|++
T Consensus 151 ~~~ALaaGN~Vi~Kps~~~p~~~~~~l~~~l~~aG~P 187 (465)
T cd07151 151 VAPALALGNAVVLKPASDTPITGGLLLAKIFEEAGLP 187 (465)
T ss_pred HHHHHHcCCEEEEECCCCCcHhHHHHHHHHHHHcCcC
Confidence 3556779999999999876666555678888999886
No 449
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=25.47 E-value=3.8e+02 Score=24.31 Aligned_cols=94 Identities=13% Similarity=0.080 Sum_probs=55.4
Q ss_pred CCceEEEcccccccCHHHHH-HHHh--------ccCcceeEeeccc---cccHHHHHHHHHHHHHcCCcEEEecCCCCCC
Q 040341 126 GRHVQIVGDDLLVTNPKRVE-KAIK--------EKTCNALLLKVNQ---IGSVTESIEAVKMSKRAGWGVMASHRSGETE 193 (251)
Q Consensus 126 g~~~~ivgDdl~vtn~~~i~-~~i~--------~~a~n~ilIK~nq---iGtlte~l~~~~~a~~~g~~~ivs~rsgEt~ 193 (251)
+.++.|++.-=+.-..+.+. +|+. .+..+.++||.|. .|++.++++.++........++|-.++-|-
T Consensus 116 ~~~~~i~~TRKt~Pg~r~~~k~Av~~GGg~~HR~gL~d~vlikdnHi~~~g~i~~~v~~~k~~~p~~~~I~VEv~tlee- 194 (273)
T PRK05848 116 SHKVKLLDTRKTRPLLRIFEKYSVRNGGASNHRLGLDDCLMLKDTHLKHIKDLKEFIQHARKNIPFTAKIEIECESLEE- 194 (273)
T ss_pred CCCeEEEecCCCCcchhHHHHHHHHhCCCccccCCchhhhCcCHHHHHHHCcHHHHHHHHHHhCCCCceEEEEeCCHHH-
Confidence 44677776653333344444 3444 4455589999997 577777776665433334567776654444
Q ss_pred chhHhhhhhhcccCccccCCCCchhHHHHhhH
Q 040341 194 DTFIADLSVGLATGQIKTGAPCRSERLAKYNQ 225 (251)
Q Consensus 194 d~~iadLAva~~~~~ik~G~~~r~Er~aKyN~ 225 (251)
+--|+..++..|..-.+ ..|-+.+.-+
T Consensus 195 ----a~~A~~~GaDiI~LDn~-~~e~l~~~v~ 221 (273)
T PRK05848 195 ----AKNAMNAGADIVMCDNM-SVEEIKEVVA 221 (273)
T ss_pred ----HHHHHHcCCCEEEECCC-CHHHHHHHHH
Confidence 55666777777776665 3444444333
No 450
>cd07142 ALDH_F2BC Arabidosis aldehyde dehydrogenase family 2 B4, B7, C4-like. Included in this CD is the Arabidosis aldehyde dehydrogenase family 2 members B4 and B7 (EC=1.2.1.3), which are mitochondrial homotetramers that oxidize acetaldehyde and glycolaldehyde, but not L-lactaldehyde. Also in this group, is the Arabidosis cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme involved in the oxidation of sinapalehyde and coniferaldehyde.
Probab=25.29 E-value=86 Score=30.35 Aligned_cols=73 Identities=12% Similarity=0.128 Sum_probs=45.0
Q ss_pred HHhccCcceeEeeccccccHHHHHHHHHHHHHcCCcE----EEecCCCCCCchhHhhhhhhcccCccccCCCCchhHHHH
Q 040341 147 AIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAGWGV----MASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAK 222 (251)
Q Consensus 147 ~i~~~a~n~ilIK~nqiGtlte~l~~~~~a~~~g~~~----ivs~rsgEt~d~~iadLAva~~~~~ik~G~~~r~Er~aK 222 (251)
+..+-+.|++++||+.-..++ +..++++..++|++- +|.....++.+..+.|-. -..-..+|++.-+.++++
T Consensus 163 ~~ALaaGN~VV~KPs~~tp~~-~~~l~~~~~~aGlP~gvv~~v~g~~~~~~~~L~~~~~---v~~v~fTGs~~~G~~v~~ 238 (476)
T cd07142 163 GPALACGNTIVLKPAEQTPLS-ALLAAKLAAEAGLPDGVLNIVTGFGPTAGAAIASHMD---VDKVAFTGSTEVGKIIMQ 238 (476)
T ss_pred HHHHHcCCEEEEECCCcccHH-HHHHHHHHHHcCcCcccEEEEeCCchhHHHHHhcCCC---CCEEEEECcHHHHHHHHH
Confidence 445679999999999875555 456888899998763 333221122111111111 123567898888887776
Q ss_pred h
Q 040341 223 Y 223 (251)
Q Consensus 223 y 223 (251)
+
T Consensus 239 ~ 239 (476)
T cd07142 239 L 239 (476)
T ss_pred H
Confidence 5
No 451
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=25.23 E-value=5.6e+02 Score=23.80 Aligned_cols=102 Identities=21% Similarity=0.346 Sum_probs=58.1
Q ss_pred ccChhhHHHHHHHhhhcCCc-----eeec-CC--CCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcce
Q 040341 84 KVSGDGLKNVYRSFISDHPI-----VSIE-DP--FDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNA 155 (251)
Q Consensus 84 ~~s~~elid~~~~l~~~ypI-----~~IE-DP--~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ 155 (251)
.++++++.+++..+-+.+|+ +++| .| +.+ +..+.|. +.|-...-+|=+. .|++.++
T Consensus 64 ~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~---e~l~~l~-~~G~~rvsiGvqS--~~~~~l~---------- 127 (377)
T PRK08599 64 ALSAEQLERLLTAIHRNLPLSGLEEFTFEANPGDLTK---EKLQVLK-DSGVNRISLGVQT--FNDELLK---------- 127 (377)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCCCCH---HHHHHHH-HcCCCEEEEeccc--CCHHHHH----------
Confidence 35677877777765444554 2333 33 333 3333333 2343222333331 2333333
Q ss_pred eEeeccccccHHHHHHHHHHHHHcCCcE----EEecCCCCCCchhHhhhhhhc
Q 040341 156 LLLKVNQIGSVTESIEAVKMSKRAGWGV----MASHRSGETEDTFIADLSVGL 204 (251)
Q Consensus 156 ilIK~nqiGtlte~l~~~~~a~~~g~~~----ivs~rsgEt~d~~iadLAva~ 204 (251)
.+++-.+..+++++++.++++|+.. +|-.-.|||.+++..++..+.
T Consensus 128 ---~l~r~~~~~~~~~~i~~l~~~g~~~v~~dli~GlPgqt~~~~~~~l~~~~ 177 (377)
T PRK08599 128 ---KIGRTHNEEDVYEAIANAKKAGFDNISIDLIYALPGQTIEDFKESLAKAL 177 (377)
T ss_pred ---HcCCCCCHHHHHHHHHHHHHcCCCcEEEeeecCCCCCCHHHHHHHHHHHH
Confidence 2456678899999999999999863 222335899998877765544
No 452
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=25.22 E-value=4.6e+02 Score=22.89 Aligned_cols=42 Identities=12% Similarity=0.233 Sum_probs=29.2
Q ss_pred ccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEe
Q 040341 113 DDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLL 158 (251)
Q Consensus 113 ~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilI 158 (251)
-|++-..++.+..+-++...|- +.+++++++..+.+ ++++++
T Consensus 179 ~~~~li~~l~~~~~ipvi~~GG---i~s~edi~~l~~~G-~~~viv 220 (234)
T PRK13587 179 PNFELTGQLVKATTIPVIASGG---IRHQQDIQRLASLN-VHAAII 220 (234)
T ss_pred cCHHHHHHHHHhCCCCEEEeCC---CCCHHHHHHHHHcC-CCEEEE
Confidence 3788888888877545655554 67999999988765 444443
No 453
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=25.21 E-value=4e+02 Score=24.39 Aligned_cols=67 Identities=15% Similarity=0.175 Sum_probs=39.9
Q ss_pred CceEEEcccccccC--HHHHHHHHhccCcceeEe-eccccccHHHHHHHHHHHHHcCCcEEEecCCCCCCc
Q 040341 127 RHVQIVGDDLLVTN--PKRVEKAIKEKTCNALLL-KVNQIGSVTESIEAVKMSKRAGWGVMASHRSGETED 194 (251)
Q Consensus 127 ~~~~ivgDdl~vtn--~~~i~~~i~~~a~n~ilI-K~nqiGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d 194 (251)
.++.||.|.....+ .+++...++.. .+.... ..-.--++....++++.+++++..++|+-.-|-+-|
T Consensus 23 ~~~lvv~~~~~~~~g~~~~v~~~l~~~-~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IiaiGGGs~~D 92 (332)
T cd08180 23 KRVLIVTDPFMVKSGMLDKVTDHLDSS-IEVEIFSDVVPDPPIEVVAKGIKKFLDFKPDIVIALGGGSAID 92 (332)
T ss_pred CeEEEEeCchhhhCccHHHHHHHHHhc-CcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEECCchHHH
Confidence 46667766522222 24455555443 333222 122224778888888889999999999887666654
No 454
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=25.20 E-value=1.5e+02 Score=27.23 Aligned_cols=87 Identities=17% Similarity=0.341 Sum_probs=56.3
Q ss_pred CccChhhHHHHHHHhhhcCCceeecCCCC------------------cccHHHHHHHHhhhCCceEEEcccccccCHHHH
Q 040341 83 QKVSGDGLKNVYRSFISDHPIVSIEDPFD------------------QDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRV 144 (251)
Q Consensus 83 ~~~s~~elid~~~~l~~~ypI~~IEDP~~------------------e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i 144 (251)
...+|+.-.+.... +++.++-+++=|+. +++++....+-+.+|.++..||+.= +
T Consensus 95 STisp~~a~~~a~~-~~~~G~~~lDAPVsGg~~~A~~GtLtimvGG~~~~f~r~~pvl~~~g~~i~~~G~~G---~---- 166 (286)
T COG2084 95 STISPETARELAAA-LAAKGLEFLDAPVSGGVPGAAAGTLTIMVGGDAEAFERAKPVLEAMGKNIVHVGPVG---A---- 166 (286)
T ss_pred CCCCHHHHHHHHHH-HHhcCCcEEecCccCCchhhhhCceEEEeCCCHHHHHHHHHHHHHhcCceEEECCCC---c----
Confidence 45778886665554 79999999999985 4455555555666676677777751 1
Q ss_pred HHHHhccCcceeEeeccccccHHHHHHHHHHHHHcCCcE
Q 040341 145 EKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAGWGV 183 (251)
Q Consensus 145 ~~~i~~~a~n~ilIK~nqiGtlte~l~~~~~a~~~g~~~ 183 (251)
+...|.||-+++. +++.-.-|+..+|+++|+..
T Consensus 167 --G~~~Kl~nn~l~~----~~~~a~aEAl~la~k~Gld~ 199 (286)
T COG2084 167 --GQAAKLANNILLA----GNIAALAEALALAEKAGLDP 199 (286)
T ss_pred --hHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCCCH
Confidence 1222344444444 34455567788899999876
No 455
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=25.19 E-value=4.7e+02 Score=23.68 Aligned_cols=31 Identities=26% Similarity=0.241 Sum_probs=19.5
Q ss_pred ccHHHHHHHHHHHHHcCCcEEEecCCCCCCc
Q 040341 164 GSVTESIEAVKMSKRAGWGVMASHRSGETED 194 (251)
Q Consensus 164 Gtlte~l~~~~~a~~~g~~~ivs~rsgEt~d 194 (251)
-++....++++.+++.+..++|+-.-|-..|
T Consensus 62 p~~~~v~~~~~~~~~~~~d~IIaiGGGs~~D 92 (332)
T cd07766 62 PTFEEVKEAVERARAAEVDAVIAVGGGSTLD 92 (332)
T ss_pred cCHHHHHHHHHHHHhcCcCEEEEeCCchHHH
Confidence 4666666667777777777777665444433
No 456
>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor. This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses.
Probab=25.18 E-value=4.2e+02 Score=24.89 Aligned_cols=80 Identities=14% Similarity=0.152 Sum_probs=49.0
Q ss_pred ceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCH-------HHH---HHHHhccCcceeEeeccccccHHHHHHH
Q 040341 103 IVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNP-------KRV---EKAIKEKTCNALLLKVNQIGSVTESIEA 172 (251)
Q Consensus 103 I~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~-------~~i---~~~i~~~a~n~ilIK~nqiGtlte~l~~ 172 (251)
++...|.+.+.=.+.+.+..++. .+.|+..+.+-.+. .+. .+-++...+++|++ .+...++..+
T Consensus 177 ii~~~d~yG~~~~~~f~~~~~~~--GicIa~~e~~~~~~~~~~~~~~~~~~~~~~ik~~~a~vVvv----~~~~~~~~~l 250 (403)
T cd06361 177 IIITDDDYGRSALETFIIQAEAN--GVCIAFKEILPASLSDNTKLNRIIRTTEKIIEENKVNVIVV----FARQFHVFLL 250 (403)
T ss_pred EEEecCchHHHHHHHHHHHHHHC--CeEEEEEEEecCccCcchhHHHHHHHHHHHHhcCCCeEEEE----EeChHHHHHH
Confidence 44556666655555566655655 46676665332211 121 12244556777777 3567788899
Q ss_pred HHHHHHcCCcE-EEecC
Q 040341 173 VKMSKRAGWGV-MASHR 188 (251)
Q Consensus 173 ~~~a~~~g~~~-ivs~r 188 (251)
++.|++.|+.. ||++.
T Consensus 251 ~~~a~~~g~~~~wigs~ 267 (403)
T cd06361 251 FNKAIERNINKVWIASD 267 (403)
T ss_pred HHHHHHhCCCeEEEEEC
Confidence 99999999874 78764
No 457
>cd07083 ALDH_P5CDH ALDH subfamily NAD+-dependent delta(1)-pyrroline-5-carboxylate dehydrogenase-like. ALDH subfamily of the NAD+-dependent, delta(1)-pyrroline-5-carboxylate dehydrogenases (P5CDH, EC=1.5.1.12). The proline catabolic enzymes, proline dehydrogenase and P5CDH catalyze the two-step oxidation of proline to glutamate. P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA). These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis. In certain prokaryotes such as Escherichia coli, PutA is also a transcriptional repressor of the proline utilization genes. Monofunctional enzyme sequences such as those seen in the Bacillus RocA P5CDH are also present in this subfamily as well as the human ALDH4A1 P5CDH and the Drosophila Aldh17 P5CDH.
Probab=25.18 E-value=1e+02 Score=30.20 Aligned_cols=72 Identities=13% Similarity=0.118 Sum_probs=43.2
Q ss_pred HHhccCcceeEeeccccccHHHHHHHHHHHHHcCCcE----EEecCCCCCCchhHhhhhhhcccCccccCCCCchhHHHH
Q 040341 147 AIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAGWGV----MASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAK 222 (251)
Q Consensus 147 ~i~~~a~n~ilIK~nqiGtlte~l~~~~~a~~~g~~~----ivs~rsgEt~d~~iadLAva~~~~~ik~G~~~r~Er~aK 222 (251)
+..+-+.|++++||+.....+ +..++++..++|++- +|.....+..+..+.|-.| ..-..+|+..-+..+.+
T Consensus 176 ~~ALaaGN~VVlKPs~~tp~~-~~~l~~~~~eaGlP~gvv~~v~g~~~~~~~~L~~~~~v---~~v~ftGs~~~g~~v~~ 251 (500)
T cd07083 176 VAPVAVGNTVIAKPAEDAVVV-GYKVFEIFHEAGFPPGVVQFLPGVGEEVGAYLTEHERI---RGINFTGSLETGKKIYE 251 (500)
T ss_pred HHHHHcCCeEEEeCCCcchHH-HHHHHHHHHHcCCCCCceEEEeCCCchhHHHHhcCCCc---CEEEEECcHHHHHHHHH
Confidence 445679999999999975444 667888889998863 4433222222222222211 13467887776666543
No 458
>PRK12755 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=25.17 E-value=6e+02 Score=24.16 Aligned_cols=137 Identities=14% Similarity=0.143 Sum_probs=78.5
Q ss_pred CCCCcHHHHHHHHHHHHhcCCc--cceeeeeehhhhcccccCCcceeecCCCC--CCCCCCccChhhHHHHHHHh---hh
Q 040341 27 NIQESYEGFELLKTAIAKGGYI--GKIVIGMDVAASEFYDSKDKTYDLNFKEE--NNDGSQKVSGDGLKNVYRSF---IS 99 (251)
Q Consensus 27 ~~~~~eeal~~i~~Ai~~aGy~--~kI~iglD~Aase~~~~~~g~Y~l~~~~~--~~d~~~~~s~~elid~~~~l---~~ 99 (251)
.+.+.+++++.... +++.+-+ .++.+-+-+- |++..+ .| .|++. +++.+.++.-.+=+.+.++| +.
T Consensus 63 SI~d~~~aleyA~~-Lk~l~~~~~d~l~ivmR~y---~eKPRT-~~--gwkGli~DP~ldgs~~i~~GL~~~R~ll~~~~ 135 (353)
T PRK12755 63 SIHDPEAALEYARR-LKALADELSDRLLIVMRVY---FEKPRT-TV--GWKGLINDPHLDGSFDIEEGLRIARKLLLDLV 135 (353)
T ss_pred CCCCHHHHHHHHHH-HHHHHhhhhcceEEEEEec---cccCCC-Cc--CCcCCCCCccccccccHHHHHHHHHHHHHHHH
Confidence 68899999998877 4455544 3455444442 333322 23 23332 12233455555656665555 56
Q ss_pred cCCceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeeccccccHHHHHHHHHHHHH
Q 040341 100 DHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKR 178 (251)
Q Consensus 100 ~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqiGtlte~l~~~~~a~~ 178 (251)
++++-..=+-++..+.+-.+.+- ..--+|=. ++.|-...+.+ -+..-.|.+|=+.-|+++++++++.-|+.
T Consensus 136 e~Glp~atE~ld~~~~~y~~Dlv-----s~~aIGAR-t~esq~hre~a--Sgl~~PVgfKngt~g~i~~al~Ai~aa~~ 206 (353)
T PRK12755 136 ELGLPLATEALDPISPQYLGDLI-----SWGAIGAR-TTESQTHREMA--SGLSMPVGFKNGTDGSLKVAINAIRAAAQ 206 (353)
T ss_pred HhCCCEEEEecCcccHHHHHhhh-----hheeeccc-hhcCHHHHHHh--cCCCCeeEecCCCCCCHHHHHHHHHHHhC
Confidence 76543333344444444444332 22244554 45665444444 34567899999999999999999987765
No 459
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=25.17 E-value=99 Score=26.22 Aligned_cols=52 Identities=17% Similarity=0.293 Sum_probs=40.3
Q ss_pred eeEeeccccccHHHHHHHHHHHHHcCCcEEEecCCCCCCchhHhhhhhhccc
Q 040341 155 ALLLKVNQIGSVTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLAT 206 (251)
Q Consensus 155 ~ilIK~nqiGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d~~iadLAva~~~ 206 (251)
-++|=+++-|.-.+++++++.|+++|.+++.=....++.-...+|..+-+..
T Consensus 113 Dv~I~iS~SG~t~~~i~~~~~ak~~g~~iI~iT~~~~s~l~~~ad~~l~~~~ 164 (192)
T PRK00414 113 DVLLGISTSGNSGNIIKAIEAARAKGMKVITLTGKDGGKMAGLADIEIRVPH 164 (192)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEeCC
Confidence 3455588889999999999999999999977666666666667777765543
No 460
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=25.16 E-value=6e+02 Score=24.70 Aligned_cols=159 Identities=14% Similarity=0.146 Sum_probs=83.3
Q ss_pred CCCCCCcccccCCCCCcHHHHHHHHHHHHh-cCCcc-ceeeeeehhhhcccccCCcceeecCCCCCCCCCCccC--hhhH
Q 040341 15 ATNVGDEGGFAPNIQESYEGFELLKTAIAK-GGYIG-KIVIGMDVAASEFYDSKDKTYDLNFKEENNDGSQKVS--GDGL 90 (251)
Q Consensus 15 ~~~vgdeGGfap~~~~~eeal~~i~~Ai~~-aGy~~-kI~iglD~Aase~~~~~~g~Y~l~~~~~~~d~~~~~s--~~el 90 (251)
..++|+..-| .+..++++++.+.+++.. .+|.+ .=...+--|..+++.. .+...++ | .+-..+ ..|.
T Consensus 150 ~l~~G~p~~~--~~~~p~~~~~~~~~~~~~~~~Y~~~~G~~~lReaia~~~~~-~~~~~~~---~---~~I~it~G~~ea 220 (517)
T PRK13355 150 KLNIGNPAPF--GFRTPDEVVYDMAQQLTDTEGYSDSKGLFSARKAIMQYAQL-KGLPNVD---V---DDIYTGNGVSEL 220 (517)
T ss_pred EecCcCCCcC--CCCCCHHHHHHHHHHhhcCCCCCCCcChHHHHHHHHHHHHh-cCCCCCC---h---hHEEEeCcHHHH
Confidence 3566665421 234467788877777642 24543 1112222233444432 1111121 0 012222 4566
Q ss_pred HHHHHH-hhhcCCceeecCCCCcccHHHHHHHHhhhCCce-EEEcc--cccccCHHHHHHHHhccCcceeEeeccc-cc-
Q 040341 91 KNVYRS-FISDHPIVSIEDPFDQDDWEHHAELTGKIGRHV-QIVGD--DLLVTNPKRVEKAIKEKTCNALLLKVNQ-IG- 164 (251)
Q Consensus 91 id~~~~-l~~~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~-~ivgD--dl~vtn~~~i~~~i~~~a~n~ilIK~nq-iG- 164 (251)
+..... +++.=.-|.|++|.. ..|....+..|.++ .+-.| +-+.-+++.+++++..+..-.++.-||- .|
T Consensus 221 l~~~~~~l~~~Gd~Vli~~P~y----~~y~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~~~k~i~i~nP~NPTG~ 296 (517)
T PRK13355 221 INLSMSALLDDGDEVLIPSPDY----PLWTACVNLAGGTAVHYRCDEQSEWYPDIDDIRSKITSRTKAIVIINPNNPTGA 296 (517)
T ss_pred HHHHHHHhCCCCCEEEEcCCCC----cCHHHHHHHCCCEEEEeecCcccCCCCCHHHHHHhcCcCceEEEEECCCCCCCc
Confidence 655444 333323688899965 44555555665443 23233 2255688999988865543344566753 33
Q ss_pred --cHHHHHHHHHHHHHcCCcEEEe
Q 040341 165 --SVTESIEAVKMSKRAGWGVMAS 186 (251)
Q Consensus 165 --tlte~l~~~~~a~~~g~~~ivs 186 (251)
+..+..+++++|+++++.+++-
T Consensus 297 v~~~~~l~~i~~~a~~~~~~ii~D 320 (517)
T PRK13355 297 LYPREVLQQIVDIAREHQLIIFSD 320 (517)
T ss_pred CcCHHHHHHHHHHHHHcCcEEEEe
Confidence 4456788899999999866543
No 461
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=25.16 E-value=4.7e+02 Score=23.12 Aligned_cols=89 Identities=16% Similarity=0.069 Sum_probs=51.0
Q ss_pred hhhcCCceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhcc------CcceeEe-ecccccc---H
Q 040341 97 FISDHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEK------TCNALLL-KVNQIGS---V 166 (251)
Q Consensus 97 l~~~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~------a~n~ilI-K~nqiGt---l 166 (251)
++..-..+.+.+|.+.--+..+. +....|-++..+--+...-+++.+++++... ....+.| -||..|+ +
T Consensus 67 l~~~gd~v~~~~~~~~~~~~~~~-~~~~~g~~~~~v~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~g~~~~~ 145 (338)
T cd06502 67 HTQPGGSVICHETAHIYTDEAGA-PEFLSGVKLLPVPGENGKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEGGTVYPL 145 (338)
T ss_pred hcCCCCeEEEecCcceeeecCCc-HHHHcCceEEeecCCCCcCCHHHHHHHhhccCCCcCCcceEEEEEeecCCccccCH
Confidence 33433456677887643332221 1122343443342222445788999888641 2344444 3666675 5
Q ss_pred HHHHHHHHHHHHcCCcEEEe
Q 040341 167 TESIEAVKMSKRAGWGVMAS 186 (251)
Q Consensus 167 te~l~~~~~a~~~g~~~ivs 186 (251)
.+..+++++|+++|..++|-
T Consensus 146 ~~l~~i~~~~~~~~~~livD 165 (338)
T cd06502 146 DELKAISALAKENGLPLHLD 165 (338)
T ss_pred HHHHHHHHHHHHcCCeEeec
Confidence 66777889999999888874
No 462
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=25.11 E-value=5.3e+02 Score=24.35 Aligned_cols=112 Identities=15% Similarity=0.145 Sum_probs=69.4
Q ss_pred HHHhhhcCCceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEe-ec-cccccHHHHHH
Q 040341 94 YRSFISDHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLL-KV-NQIGSVTESIE 171 (251)
Q Consensus 94 ~~~l~~~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilI-K~-nqiGtlte~l~ 171 (251)
+..++..=.-+.+.+.....-+..|..+.++.|-.+..+ | ..+++.+++++..+ ...|.+ -| |-.|.+.+.-+
T Consensus 102 l~all~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~~v~~v-d---~~d~~~l~~ai~~~-tklV~~esp~Nptg~v~dl~~ 176 (403)
T PRK07810 102 LGALLGAGDRLVAARSLFGSCFVVCNEILPRWGVETVFV-D---GEDLSQWEEALSVP-TQAVFFETPSNPMQSLVDIAA 176 (403)
T ss_pred HHHHhCCCCEEEEccCCcchHHHHHHHHHHHcCcEEEEE-C---CCCHHHHHHhcCcC-ceEEEEECCCCCCCeecCHHH
Confidence 333443322333444444344666777777777666555 3 24788899888654 345544 24 56788888888
Q ss_pred HHHHHHHcCCcEEEecC--CCCCCc--hhHhhhhhhcccCccc
Q 040341 172 AVKMSKRAGWGVMASHR--SGETED--TFIADLSVGLATGQIK 210 (251)
Q Consensus 172 ~~~~a~~~g~~~ivs~r--sgEt~d--~~iadLAva~~~~~ik 210 (251)
++++|+++|..++|-.- .+-... ..=+|+.|.+...++-
T Consensus 177 I~~la~~~g~~vivD~a~a~~~~~~~~~~gaDivv~S~tK~l~ 219 (403)
T PRK07810 177 VSELAHAAGAKVVLDNVFATPLLQRGLPLGADVVVYSGTKHID 219 (403)
T ss_pred HHHHHHHcCCEEEEECCCCccccCChhhcCCcEEEccCCceec
Confidence 99999999998887443 222211 2236888888777764
No 463
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=25.05 E-value=6.1e+02 Score=24.19 Aligned_cols=74 Identities=15% Similarity=0.279 Sum_probs=47.8
Q ss_pred eccccccHHHHHHHHHHHHHc--CCc----EEEecCCCCCCchhHhhhhhhcccC--cc-------ccCCC---------
Q 040341 159 KVNQIGSVTESIEAVKMSKRA--GWG----VMASHRSGETEDTFIADLSVGLATG--QI-------KTGAP--------- 214 (251)
Q Consensus 159 K~nqiGtlte~l~~~~~a~~~--g~~----~ivs~rsgEt~d~~iadLAva~~~~--~i-------k~G~~--------- 214 (251)
.+|+--+..+..++++.+++. |+. +|+|.. |||+++|-.-+......+ .+ .+|.|
T Consensus 267 ~M~R~~~~~~~~~~i~~lr~~~~~i~i~~d~IvGfP-gET~edf~~tl~fi~~~~~~~~~~~~~sp~pGT~~~~~~~~~v 345 (434)
T PRK14330 267 LMNRRYTREEYLELIEKIRSKVPDASISSDIIVGFP-TETEEDFMETVDLVEKAQFERLNLAIYSPREGTVAWKYYKDDV 345 (434)
T ss_pred hcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEECC-CCCHHHHHHHHHHHHhcCCCEEeeeeccCCCCChhhhhCccCC
Confidence 356656888999999999986 554 578875 999998866555543332 11 22222
Q ss_pred CchhHHHHhhHHHHHHHHh
Q 040341 215 CRSERLAKYNQLLRIEEEL 233 (251)
Q Consensus 215 ~r~Er~aKyN~llrie~~l 233 (251)
...+....+.+|.++.+++
T Consensus 346 ~~~~~~~r~~~l~~~~~~~ 364 (434)
T PRK14330 346 PYEEKVRRMQYLLNLQKRI 364 (434)
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 2334456677777777665
No 464
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=25.02 E-value=2.5e+02 Score=26.52 Aligned_cols=52 Identities=19% Similarity=0.254 Sum_probs=41.3
Q ss_pred eEEEcccccccCHHHHHHHHhccCcceeEeeccccc----------cHHHHHHHHHHHHHcCCcE
Q 040341 129 VQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIG----------SVTESIEAVKMSKRAGWGV 183 (251)
Q Consensus 129 ~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqiG----------tlte~l~~~~~a~~~g~~~ 183 (251)
+-|=+|. .++.+.+.++++.|. ++|+|--+..- -+..|.+++++|+..|..|
T Consensus 76 ValHLDH--g~~~e~i~~Ai~~GF-tSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~GvsV 137 (347)
T TIGR01521 76 VVMHQDH--GNSPATCQRAIQLGF-TSVMMDGSLREDAKTPADYDYNVRVTAEVVAFAHAVGASV 137 (347)
T ss_pred EEEECCC--CCCHHHHHHHHHcCC-CEEeecCcCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 3344787 478999999999975 78888877642 5677899999999999988
No 465
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=25.01 E-value=6.1e+02 Score=24.17 Aligned_cols=104 Identities=15% Similarity=0.279 Sum_probs=62.9
Q ss_pred CCCcccccCCCCCcHHHHHHHHHHHHhcCCc-c---ceeeeeehhhhcccccCCcceeecCCCCCCCCCCccChhhHHHH
Q 040341 18 VGDEGGFAPNIQESYEGFELLKTAIAKGGYI-G---KIVIGMDVAASEFYDSKDKTYDLNFKEENNDGSQKVSGDGLKNV 93 (251)
Q Consensus 18 vgdeGGfap~~~~~eeal~~i~~Ai~~aGy~-~---kI~iglD~Aase~~~~~~g~Y~l~~~~~~~d~~~~~s~~elid~ 93 (251)
+.--|||..-+-.+-+.+.-+..++ .+.+. + ||.|+.|.. +-+||
T Consensus 112 ~a~~g~yGa~L~~~~eLv~e~V~~v-~~~l~~pVs~KIRI~~d~~------------------------------kTvd~ 160 (358)
T KOG2335|consen 112 VAKRGGYGAFLMDNPELVGEMVSAV-RANLNVPVSVKIRIFVDLE------------------------------KTVDY 160 (358)
T ss_pred HHhcCCccceeccCHHHHHHHHHHH-HhhcCCCeEEEEEecCcHH------------------------------HHHHH
Confidence 3456788777777777777777777 45555 2 566655442 22333
Q ss_pred HHHhhhcCCceee---------cCC-CCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcce
Q 040341 94 YRSFISDHPIVSI---------EDP-FDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNA 155 (251)
Q Consensus 94 ~~~l~~~ypI~~I---------EDP-~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ 155 (251)
.+. +.+-|.-.| ..+ -..-||+....+.+.+.+ ++|+..- .|++++++.+.++.-.+.+
T Consensus 161 ak~-~e~aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~~~~-ipviaNG-nI~~~~d~~~~~~~tG~dG 229 (358)
T KOG2335|consen 161 AKM-LEDAGVSLLTVHGRTREQKGLKTGPADWEAIKAVRENVPD-IPVIANG-NILSLEDVERCLKYTGADG 229 (358)
T ss_pred HHH-HHhCCCcEEEEecccHHhcCCCCCCcCHHHHHHHHHhCcC-CcEEeeC-CcCcHHHHHHHHHHhCCce
Confidence 322 222231111 111 223589999999999954 8898777 6888888888877433333
No 466
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=24.85 E-value=1.9e+02 Score=25.84 Aligned_cols=81 Identities=20% Similarity=0.237 Sum_probs=50.1
Q ss_pred cCCCCcccHHHHHHHHhhhCC-ceEEEcc--cccccCHHHHHHHHhccCcceeEeeccccccHHHHHHHHHHHHHcCCcE
Q 040341 107 EDPFDQDDWEHHAELTGKIGR-HVQIVGD--DLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAGWGV 183 (251)
Q Consensus 107 EDP~~e~D~~~~~~l~~~lg~-~~~ivgD--dl~vtn~~~i~~~i~~~a~n~ilIK~nqiGtlte~l~~~~~a~~~g~~~ 183 (251)
.+||...=..++.+-.+.+|. ......| .-.-+....++.++ ....++|+|-|.-- +....+++.|+++|++|
T Consensus 44 ~~~f~~~~~~g~~~~a~~~g~~~~~~~~~~~~d~~~Q~~~i~~~i-a~~~daIiv~~~d~---~~~~~~v~~a~~aGIpV 119 (322)
T COG1879 44 GNPFFQAVRKGAEAAAKKLGVVVAVVIADAQNDVAKQIAQIEDLI-AQGVDAIIINPVDP---DALTPAVKKAKAAGIPV 119 (322)
T ss_pred CChHHHHHHHHHHHHHHHcCCcEEEEecccccChHHHHHHHHHHH-HcCCCEEEEcCCCh---hhhHHHHHHHHHCCCcE
Confidence 344444444557777777764 2233333 11223556777776 55788999988754 44455677899999999
Q ss_pred EEecCCCC
Q 040341 184 MASHRSGE 191 (251)
Q Consensus 184 ivs~rsgE 191 (251)
+.=.+...
T Consensus 120 v~~d~~~~ 127 (322)
T COG1879 120 VTVDSDIP 127 (322)
T ss_pred EEEecCCC
Confidence 77665433
No 467
>cd06362 PBP1_mGluR Ligand binding domain of the metabotropic glutamate receptors (mGluR). Ligand binding domain of the metabotropic glutamate receptors (mGluR), which are members of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. mGluRs bind to glutamate and function as an excitatory neurotransmitter; they are involved in learning, memory, anxiety, and the perception of pain. Eight subtypes of mGluRs have been cloned so far, and are classified into three groups according to their sequence similarities, transduction mechanisms, and pharmacological profiles. Group I is composed of mGlu1R and mGlu5R that both stimulate PLC hydrolysis. Group II includes mGlu2R and mGlu3R, which inhibit adenylyl cyclase, as do mGlu4R, mGlu6R, mGlu7R, and mGlu8R, which form group III.
Probab=24.82 E-value=4.7e+02 Score=24.58 Aligned_cols=93 Identities=11% Similarity=0.143 Sum_probs=49.6
Q ss_pred HHHHHHHhhhcCC-----ceeecCCCCcccHHHHHHHHhhhCCceEEEccccccc--CHHHHHHHHh----ccCcceeEe
Q 040341 90 LKNVYRSFISDHP-----IVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVT--NPKRVEKAIK----EKTCNALLL 158 (251)
Q Consensus 90 lid~~~~l~~~yp-----I~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vt--n~~~i~~~i~----~~a~n~ilI 158 (251)
+...+.+++.+|. |++-.|.+...=++.+.+..++. .+.|+..+.+-. +..++...+. ...+++|++
T Consensus 159 ~~~a~~~~l~~~~w~~vaii~~~~~~G~~~~~~~~~~~~~~--gi~i~~~~~~~~~~~~~d~~~~l~~l~~~~~a~viil 236 (452)
T cd06362 159 QAQAMVDIVKAFNWTYVSTVASEGNYGEKGIEAFEKLAAER--GICIAGSEKIPSSATEEEFDNIIRKLLSKPNARVVVL 236 (452)
T ss_pred HHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHHHHHHHHC--CeeEEEEEEcCCCCCHHHHHHHHHHHhhcCCCeEEEE
Confidence 3444444554444 44444444433334444444444 466766553321 2333333222 234566655
Q ss_pred eccccccHHHHHHHHHHHHHcCC---cEEEecC
Q 040341 159 KVNQIGSVTESIEAVKMSKRAGW---GVMASHR 188 (251)
Q Consensus 159 K~nqiGtlte~l~~~~~a~~~g~---~~ivs~r 188 (251)
= +...++..+++.+++.|+ .+||++.
T Consensus 237 ~----~~~~~~~~~~~~a~~~g~~~~~~~i~~~ 265 (452)
T cd06362 237 F----CREDDIRGLLAAAKRLNAEGHFQWIASD 265 (452)
T ss_pred E----cChHHHHHHHHHHHHcCCcCceEEEEec
Confidence 2 456788899999999999 4788874
No 468
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=24.69 E-value=4.7e+02 Score=22.83 Aligned_cols=38 Identities=5% Similarity=-0.026 Sum_probs=18.2
Q ss_pred cHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcc
Q 040341 114 DWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCN 154 (251)
Q Consensus 114 D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n 154 (251)
.++-.+++.+.++ +||.-+= =+++.+++++.+..++..
T Consensus 64 n~~~I~~i~~~~~--~pi~vGG-GIrs~e~v~~~l~~Ga~k 101 (234)
T PRK13587 64 EFDYIKSLRRLTT--KDIEVGG-GIRTKSQIMDYFAAGINY 101 (234)
T ss_pred hHHHHHHHHhhcC--CeEEEcC-CcCCHHHHHHHHHCCCCE
Confidence 3455555555542 2333222 245556666555554444
No 469
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=24.52 E-value=2.9e+02 Score=25.58 Aligned_cols=51 Identities=12% Similarity=0.156 Sum_probs=36.5
Q ss_pred ccccccHHHHHHHHHHHHHcCCc-EE---EecCCCCCCchhHhhh--hhhcccCccc
Q 040341 160 VNQIGSVTESIEAVKMSKRAGWG-VM---ASHRSGETEDTFIADL--SVGLATGQIK 210 (251)
Q Consensus 160 ~nqiGtlte~l~~~~~a~~~g~~-~i---vs~rsgEt~d~~iadL--Ava~~~~~ik 210 (251)
+++..+..+++++++.++++|+. +- +-.-.++|.+++..++ ++.+++..+.
T Consensus 129 lgR~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~~~~~~~l~~~~~l~~~~is 185 (360)
T TIGR00539 129 LGRQHSAKNIAPAIETALKSGIENISLDLMYGLPLQTLNSLKEELKLAKELPINHLS 185 (360)
T ss_pred hCCCCCHHHHHHHHHHHHHcCCCeEEEeccCCCCCCCHHHHHHHHHHHHccCCCEEE
Confidence 56778999999999999999985 32 2233588888776655 4555565553
No 470
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=24.46 E-value=3.1e+02 Score=26.49 Aligned_cols=43 Identities=30% Similarity=0.429 Sum_probs=33.3
Q ss_pred ccccccHHHHHHHHHHHHHc--CCcE----EEecCCCCCCchhHhhhhhh
Q 040341 160 VNQIGSVTESIEAVKMSKRA--GWGV----MASHRSGETEDTFIADLSVG 203 (251)
Q Consensus 160 ~nqiGtlte~l~~~~~a~~~--g~~~----ivs~rsgEt~d~~iadLAva 203 (251)
+|+--|..+..++++.++++ |+.+ |+|. .|||+++|-..+-+.
T Consensus 276 m~R~~t~~~~~~~v~~lr~~~pgi~i~td~IvGf-PgET~edf~~tl~~~ 324 (445)
T PRK14340 276 MNRGHTIEEYLEKIALIRSAIPGVTLSTDLIAGF-CGETEEDHRATLSLM 324 (445)
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCCEEeccEEEEC-CCCCHHHHHHHHHHH
Confidence 56666899999999999998 8754 7777 499999885554443
No 471
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=24.44 E-value=5.4e+02 Score=23.38 Aligned_cols=119 Identities=19% Similarity=0.121 Sum_probs=70.4
Q ss_pred CCCccChhhHHHHHHHhhhcCCceeecCCC---CcccHHHHHHHHhhhC--CceEEEcccccccCHH-HHHHHHhc--cC
Q 040341 81 GSQKVSGDGLKNVYRSFISDHPIVSIEDPF---DQDDWEHHAELTGKIG--RHVQIVGDDLLVTNPK-RVEKAIKE--KT 152 (251)
Q Consensus 81 ~~~~~s~~elid~~~~l~~~ypI~~IEDP~---~e~D~~~~~~l~~~lg--~~~~ivgDdl~vtn~~-~i~~~i~~--~a 152 (251)
++..+|.+|=++++.. +++.+|-.||=.| .+.|.+..+.+.++.. ..+.+++ ++.|.+ +++.+++. ++
T Consensus 16 ~g~~~s~~~Ki~ia~~-L~~~Gv~~IE~gfP~~~~~e~e~~~~i~~~~~~~~~~~~~a---l~r~~~~die~a~~~~~~~ 91 (284)
T cd07942 16 LAEPMSVEQKLRFFKL-LVKIGFKEIEVGFPSASQTDFDFVRELIEEDLIPDDVTIQV---LTQAREDLIERTFEALRGA 91 (284)
T ss_pred CCCCCCHHHHHHHHHH-HHHcCCCEEEEeCCCCCHHHHHHHHHHHHccCCCCCCEEEE---EcCCChhhHHHHHHHhCCC
Confidence 4567999998887776 6899999999843 4566677777754421 1233432 455544 48888875 33
Q ss_pred c---ceeEeec-------cccccHHHHHH----HHHHHHHcCCc-------EEEec-CCCCCCchhHhhhhhh
Q 040341 153 C---NALLLKV-------NQIGSVTESIE----AVKMSKRAGWG-------VMASH-RSGETEDTFIADLSVG 203 (251)
Q Consensus 153 ~---n~ilIK~-------nqiGtlte~l~----~~~~a~~~g~~-------~ivs~-rsgEt~d~~iadLAva 203 (251)
- =.+.+.. |.=-|..|+++ ++++|+++|.. +-++. ...+++-.|+.+++=.
T Consensus 92 ~~~~v~i~~~~Sd~h~~~~~~~s~~e~~~~~~~~v~~a~~~g~~~~~~~~~~~~~~EDasr~~~~~l~~~~~~ 164 (284)
T cd07942 92 KKAIVHLYNATSPLQRRVVFGKSKEEIIEIAVDGAKLVKELAAKYPETDWRFEYSPESFSDTELDFALEVCEA 164 (284)
T ss_pred CCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCceEEEEECCccCCCCCHHHHHHHHHH
Confidence 1 1122222 22245666655 66689998853 33333 1113556777776643
No 472
>PRK09265 aminotransferase AlaT; Validated
Probab=24.41 E-value=4.6e+02 Score=24.31 Aligned_cols=96 Identities=14% Similarity=0.125 Sum_probs=54.9
Q ss_pred hhhHHHHHHH-hhhcCCceeecCCCCcccHHHHHHHHhhhCCce-EEEccc--ccccCHHHHHHHHhccCcceeEeecc-
Q 040341 87 GDGLKNVYRS-FISDHPIVSIEDPFDQDDWEHHAELTGKIGRHV-QIVGDD--LLVTNPKRVEKAIKEKTCNALLLKVN- 161 (251)
Q Consensus 87 ~~elid~~~~-l~~~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~-~ivgDd--l~vtn~~~i~~~i~~~a~n~ilIK~n- 161 (251)
.++.+..... +++.=.-|.+++|... .|....+..|.++ .+..|+ -+.-+++.+++.+..+..-.++.-||
T Consensus 104 ~~~~l~~~~~~~~~~gd~Vlv~~p~y~----~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~P~N 179 (404)
T PRK09265 104 VSELIVMAMQALLNNGDEVLVPAPDYP----LWTAAVSLSGGKPVHYLCDEEAGWFPDLDDIRSKITPRTKAIVIINPNN 179 (404)
T ss_pred hHHHHHHHHHHhCCCCCEEEEeCCCCc----ChHHHHHHcCCEEEEEecccccCCCCCHHHHHHhccccceEEEEECCCC
Confidence 3455544443 3333235778999875 3444444444332 232332 23457888888776543334455564
Q ss_pred ccc---cHHHHHHHHHHHHHcCCcEEEe
Q 040341 162 QIG---SVTESIEAVKMSKRAGWGVMAS 186 (251)
Q Consensus 162 qiG---tlte~l~~~~~a~~~g~~~ivs 186 (251)
-.| +..+..+++++|+++|+.+++-
T Consensus 180 PtG~~~~~~~~~~i~~~a~~~~~~ii~D 207 (404)
T PRK09265 180 PTGAVYSKELLEEIVEIARQHNLIIFAD 207 (404)
T ss_pred CCCcCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 334 3455788889999999877655
No 473
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=24.38 E-value=2.9e+02 Score=20.25 Aligned_cols=56 Identities=20% Similarity=0.266 Sum_probs=39.0
Q ss_pred ccccCHHHHHHHHh----ccCcceeEeecccc-----ccHHHHHHHHHHHHHcCCcEEEecCCCC
Q 040341 136 LLVTNPKRVEKAIK----EKTCNALLLKVNQI-----GSVTESIEAVKMSKRAGWGVMASHRSGE 191 (251)
Q Consensus 136 l~vtn~~~i~~~i~----~~a~n~ilIK~nqi-----Gtlte~l~~~~~a~~~g~~~ivs~rsgE 191 (251)
++..|.+.++..+. ...+..++|-.+.+ .++.-.+..++.++++|..+.+.+.++.
T Consensus 18 L~f~~~~~~~~~l~~~~~~~~~~~vilDls~v~~iDssgi~~L~~~~~~~~~~g~~l~l~~~~~~ 82 (106)
T TIGR02886 18 LDHHTAERVRRKIDDAIERRPIKHLILNLKNVTFMDSSGLGVILGRYKKIKNEGGEVIVCNVSPA 82 (106)
T ss_pred cchhhHHHHHHHHHHHHHhCCCCEEEEECCCCcEecchHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 45566666665442 23467788866654 4566677788999999999999886544
No 474
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=24.37 E-value=5e+02 Score=24.82 Aligned_cols=50 Identities=12% Similarity=0.282 Sum_probs=34.9
Q ss_pred ccccccHHHHHHHHHHHHHcCCcE----EEecCCCCCCchhHhhhhhh--cccCcc
Q 040341 160 VNQIGSVTESIEAVKMSKRAGWGV----MASHRSGETEDTFIADLSVG--LATGQI 209 (251)
Q Consensus 160 ~nqiGtlte~l~~~~~a~~~g~~~----ivs~rsgEt~d~~iadLAva--~~~~~i 209 (251)
+++.-+..+++++++.++++|+.+ ++=.-.++|.+++..+|..+ ++...+
T Consensus 170 l~R~~~~~~~~~ai~~l~~~g~~~i~~dlI~GlP~qt~e~~~~~l~~~~~l~~~~i 225 (430)
T PRK08208 170 LHRPQKRADVHQALEWIRAAGFPILNIDLIYGIPGQTHASWMESLDQALVYRPEEL 225 (430)
T ss_pred hCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHhCCCCEE
Confidence 455557889999999999999875 23334589988887666554 444443
No 475
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=24.32 E-value=3e+02 Score=26.28 Aligned_cols=81 Identities=19% Similarity=0.322 Sum_probs=54.2
Q ss_pred ceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEee-c-cccccHHHHHHHHHHHHHcC
Q 040341 103 IVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK-V-NQIGSVTESIEAVKMSKRAG 180 (251)
Q Consensus 103 I~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK-~-nqiGtlte~l~~~~~a~~~g 180 (251)
-+.+.+|....-...|..+.++.|-++..+ | +.+++.+++++..+ ...|.+- | |-.|.+...-+++++|+++|
T Consensus 104 ~VIv~~~~y~~t~~~~~~~~~~~G~~v~~v-d---~~d~~~l~~ai~~~-tklV~vesp~NptG~v~dl~~I~~la~~~g 178 (427)
T PRK05994 104 EFIAARKLYGGSINQFGHAFKSFGWQVRWA-D---ADDPASFERAITPR-TKAIFIESIANPGGTVTDIAAIAEVAHRAG 178 (427)
T ss_pred EEEEecCcchhHHHHHHHHHHhcCcEEEEE-C---CCCHHHHHHhcCcC-CeEEEEECCCCCCCeecCHHHHHHHHHHcC
Confidence 455666666555556666666676544333 3 34788999888653 4455542 2 55688888888999999999
Q ss_pred CcEEEecC
Q 040341 181 WGVMASHR 188 (251)
Q Consensus 181 ~~~ivs~r 188 (251)
+.+++-.-
T Consensus 179 i~livD~a 186 (427)
T PRK05994 179 LPLIVDNT 186 (427)
T ss_pred CEEEEECC
Confidence 98887654
No 476
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=24.29 E-value=1.3e+02 Score=27.59 Aligned_cols=70 Identities=17% Similarity=0.218 Sum_probs=34.9
Q ss_pred eeccccccHHHHHHHHHHHHHcCCcEEEecCCCCCCchhHhhhhhh-cccCccccCCCCchhHHHHhhHHHHHHHH
Q 040341 158 LKVNQIGSVTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVG-LATGQIKTGAPCRSERLAKYNQLLRIEEE 232 (251)
Q Consensus 158 IK~nqiGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d~~iadLAva-~~~~~ik~G~~~r~Er~aKyN~llrie~~ 232 (251)
|=.+.|.+...+.+++ +..|...++-.| +=-.|+++..=... +..+.. ...|+..|+...+.+.++...+
T Consensus 196 i~nGgI~~~~da~~~l---~~~gad~VmigR-~~l~~P~l~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~ 266 (319)
T TIGR00737 196 IGNGDIFSPEDAKAML---ETTGCDGVMIGR-GALGNPWLFRQIEQYLTTGKY-KPPPTFAEKLDAILRHLQLLAD 266 (319)
T ss_pred EEeCCCCCHHHHHHHH---HhhCCCEEEECh-hhhhCChHHHHHHHHHhCCCC-CCCCCHHHHHHHHHHHHHHHHH
Confidence 3334455555544444 445676655555 22334444332222 211221 2245666888888887776544
No 477
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=24.17 E-value=4.5e+02 Score=23.24 Aligned_cols=47 Identities=13% Similarity=0.106 Sum_probs=32.7
Q ss_pred CCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeE
Q 040341 108 DPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALL 157 (251)
Q Consensus 108 DP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~il 157 (251)
+.+.--||+..+++.+.+..++...|+ +.+++++.++.+...+++++
T Consensus 178 G~~~G~d~~~i~~~~~~~~ipvIasGG---v~s~eD~~~l~~~~GvdgVi 224 (258)
T PRK01033 178 GTMKGYDLELLKSFRNALKIPLIALGG---AGSLDDIVEAILNLGADAAA 224 (258)
T ss_pred CCcCCCCHHHHHHHHhhCCCCEEEeCC---CCCHHHHHHHHHHCCCCEEE
Confidence 444555999999999988444444454 68999999988544555554
No 478
>cd07104 ALDH_BenzADH-like ALDH subfamily: NAD(P)+-dependent benzaldehyde dehydrogenase II, vanillin dehydrogenase, p-hydroxybenzaldehyde dehydrogenase and related proteins. ALDH subfamily which includes the NAD(P)+-dependent, benzaldehyde dehydrogenase II (XylC, BenzADH, EC=1.2.1.28) involved in the oxidation of benzyl alcohol to benzoate; p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH) which catalyzes the oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic acid; vanillin dehydrogenase (Vdh, VaniDH) involved in the metabolism of ferulic acid as seen in Pseudomonas putida KT2440; and other related sequences.
Probab=23.93 E-value=92 Score=29.47 Aligned_cols=36 Identities=25% Similarity=0.200 Sum_probs=28.4
Q ss_pred HHhccCcceeEeeccccccHHHHHHHHHHHHHcCCc
Q 040341 147 AIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAGWG 182 (251)
Q Consensus 147 ~i~~~a~n~ilIK~nqiGtlte~l~~~~~a~~~g~~ 182 (251)
+..+.+.|++++||+.....+-+..+.++.+++|++
T Consensus 120 ~~ALaaGN~Vi~Kps~~~p~~~~~~l~~~l~~aGlP 155 (431)
T cd07104 120 APALALGNAVVLKPDSRTPVTGGLLIAEIFEEAGLP 155 (431)
T ss_pred HHHHHcCCeEEeeCCCCChHHHHHHHHHHHHHcCCC
Confidence 455679999999999876666555677888888876
No 479
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=23.91 E-value=4.2e+02 Score=21.91 Aligned_cols=80 Identities=10% Similarity=0.134 Sum_probs=43.1
Q ss_pred ChhhHHHHHHHhhhcCCceeecCCCCc----ccHHHHHHHHhhhC-CceEEEcccccccCHHHHHHHHhccCcceeEeec
Q 040341 86 SGDGLKNVYRSFISDHPIVSIEDPFDQ----DDWEHHAELTGKIG-RHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKV 160 (251)
Q Consensus 86 s~~elid~~~~l~~~ypI~~IEDP~~e----~D~~~~~~l~~~lg-~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~ 160 (251)
+.++..+.+.. .++.++.+.-.+.. +-++.-.++.+... .++-++.+. .++..+..+.+. .++.++.|+
T Consensus 37 ~~~~~~~~~~~--~~~DlvllD~~l~~~~~~~g~~~~~~l~~~~~~~~iIvls~~---~~~~~~~~a~~~-Ga~~yl~K~ 110 (216)
T PRK10840 37 DSTALINNLPK--LDAHVLITDLSMPGDKYGDGITLIKYIKRHFPSLSIIVLTMN---NNPAILSAVLDL-DIEGIVLKQ 110 (216)
T ss_pred CHHHHHHHHHh--CCCCEEEEeCcCCCCCCCCHHHHHHHHHHHCCCCcEEEEEec---CCHHHHHHHHHC-CCeEEEECC
Confidence 44555554332 34557776555543 34555555554322 134344433 367777777766 466789998
Q ss_pred cccccHHHHHH
Q 040341 161 NQIGSVTESIE 171 (251)
Q Consensus 161 nqiGtlte~l~ 171 (251)
....-+.++++
T Consensus 111 ~~~~~l~~ai~ 121 (216)
T PRK10840 111 GAPTDLPKALA 121 (216)
T ss_pred CCHHHHHHHHH
Confidence 76444444443
No 480
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=23.90 E-value=1.2e+02 Score=23.53 Aligned_cols=22 Identities=9% Similarity=0.205 Sum_probs=9.6
Q ss_pred CHHHHHHHHhccCcceeEeecc
Q 040341 140 NPKRVEKAIKEKTCNALLLKVN 161 (251)
Q Consensus 140 n~~~i~~~i~~~a~n~ilIK~n 161 (251)
+++++++..+.|-...|++.|.
T Consensus 16 ~~~d~~~la~~GfktVInlRpd 37 (110)
T PF04273_consen 16 SPEDLAQLAAQGFKTVINLRPD 37 (110)
T ss_dssp -HHHHHHHHHCT--EEEE-S-T
T ss_pred CHHHHHHHHHCCCcEEEECCCC
Confidence 4555555555555555555554
No 481
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=23.87 E-value=1.9e+02 Score=27.67 Aligned_cols=119 Identities=11% Similarity=0.180 Sum_probs=65.6
Q ss_pred CccChhhHHHHHHHhhhc-CC-ceeecCCCC--cccH------HHHHHHHhhhCC-----ceEEEcccccccCHHHHHHH
Q 040341 83 QKVSGDGLKNVYRSFISD-HP-IVSIEDPFD--QDDW------EHHAELTGKIGR-----HVQIVGDDLLVTNPKRVEKA 147 (251)
Q Consensus 83 ~~~s~~elid~~~~l~~~-yp-I~~IEDP~~--e~D~------~~~~~l~~~lg~-----~~~ivgDdl~vtn~~~i~~~ 147 (251)
.++++++.++-.+.+.+. +. |+++-|=+. -.|+ ..+..|.+.+.. ++.+..=+...-+.+.++..
T Consensus 154 ~sr~~e~I~~Ei~~l~~~G~keI~l~~~~~~~yg~d~~~~~~~~~l~~Ll~~l~~~~g~~~ir~~s~~p~~~~~ell~~~ 233 (420)
T PRK14339 154 ISIPMDLILKEAEKAVNNGAKEIFLLGQNVNNYGKRFSSEHEKVDFSDLLDKLSEIEGLERIRFTSPHPLHMDDKFLEEF 233 (420)
T ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEeeeccccccCCCcCCcccccHHHHHHHHhcCCCccEEEECCCChhhcCHHHHHHH
Confidence 467889988888887643 44 444433321 0111 124455444421 23322101011234444444
Q ss_pred Hhcc-CcceeE-----------eeccccccHHHHHHHHHHHHHc--CCc----EEEecCCCCCCchhHhhhhh
Q 040341 148 IKEK-TCNALL-----------LKVNQIGSVTESIEAVKMSKRA--GWG----VMASHRSGETEDTFIADLSV 202 (251)
Q Consensus 148 i~~~-a~n~il-----------IK~nqiGtlte~l~~~~~a~~~--g~~----~ivs~rsgEt~d~~iadLAv 202 (251)
.+.+ .|..+. =++|+-.|..+.+++++.+++. ++. +|+|. .|||+++|-.-+.+
T Consensus 234 ~~~~~~~~~l~iglQSgsd~vLk~M~R~~t~~~~~~~v~~lr~~~p~i~i~~d~IvGf-PgETeedf~~Tl~f 305 (420)
T PRK14339 234 AKNPKICKSIHMPLQSGSSEILKAMKRGYTKEWFLNRAEKLRALVPEVSISTDIIVGF-PGESDKDFEDTMDV 305 (420)
T ss_pred HcCCCccCceEeCCccCCHHHHHhccCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEC-CCCCHHHHHHHHHH
Confidence 3321 244433 3467878999999999999997 544 57787 59999987554444
No 482
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=23.83 E-value=2.7e+02 Score=25.45 Aligned_cols=48 Identities=10% Similarity=0.027 Sum_probs=33.1
Q ss_pred cHHHHHHHHHHHHHcCCcEEEecCCCCCCchhHhhhhhhcccCccccCCCCchhHHHHh
Q 040341 165 SVTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKY 223 (251)
Q Consensus 165 tlte~l~~~~~a~~~g~~~ivs~rsgEt~d~~iadLAva~~~~~ik~G~~~r~Er~aKy 223 (251)
++.|+..+++.|+ ++||. |+-..|||.|++..-+-.=+|....|..=|
T Consensus 252 sL~el~ali~~a~-----l~v~n------DSGp~HlAaA~g~P~v~lfGpt~p~~~~P~ 299 (352)
T PRK10422 252 TFPELGALIDHAQ-----LFIGV------DSAPAHIAAAVNTPLICLFGATDHIFWRPW 299 (352)
T ss_pred CHHHHHHHHHhCC-----EEEec------CCHHHHHHHHcCCCEEEEECCCCccccCCC
Confidence 6777777766544 67765 566789999999987765556555554444
No 483
>cd07115 ALDH_HMSADH_HapE Pseudomonas fluorescens 4-hydroxymuconic semialdehyde dehydrogenase-like. 4-hydroxymuconic semialdehyde dehydrogenase (HapE, EC=1.2.1.61) of Pseudomonas fluorescens ACB involved in 4-hydroxyacetophenone degradation, and putative hydroxycaproate semialdehyde dehydrogenase (ChnE) of Brachymonas petroleovorans involved in cyclohexane metabolism, and other similar sequences, are present in this CD.
Probab=23.80 E-value=1e+02 Score=29.60 Aligned_cols=70 Identities=13% Similarity=0.173 Sum_probs=43.4
Q ss_pred HHhccCcceeEeeccccccHHHHHHHHHHHHHcCCcE----EEecCCCCCCchhHhhhhhhc--ccCccccCCCCchhHH
Q 040341 147 AIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAGWGV----MASHRSGETEDTFIADLSVGL--ATGQIKTGAPCRSERL 220 (251)
Q Consensus 147 ~i~~~a~n~ilIK~nqiGtlte~l~~~~~a~~~g~~~----ivs~rsgEt~d~~iadLAva~--~~~~ik~G~~~r~Er~ 220 (251)
+..+.+.|++++||+.....+ +..++++.+++|++- +|.....+. .+..+.. -..-..+|++.-+.++
T Consensus 139 ~~ALaaGN~Vi~Kps~~~p~~-~~~l~~~~~~aGlP~~~~~~v~g~~~~~-----~~~l~~~~~id~v~fTGs~~~g~~v 212 (453)
T cd07115 139 APALAAGNTVVLKPAELTPLS-ALRIAELMAEAGFPAGVLNVVTGFGEVA-----GAALVEHPDVDKITFTGSTAVGRKI 212 (453)
T ss_pred HHHHhcCCEEEEECCCCCcHH-HHHHHHHHHhcCcCchheEEEecCchhH-----HHHHhcCCCCCEEEEECcHHHHHHH
Confidence 455779999999999887766 556888889998763 332221122 2222211 1235668877766665
Q ss_pred HH
Q 040341 221 AK 222 (251)
Q Consensus 221 aK 222 (251)
++
T Consensus 213 ~~ 214 (453)
T cd07115 213 MQ 214 (453)
T ss_pred HH
Confidence 54
No 484
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=23.76 E-value=7.1e+02 Score=24.50 Aligned_cols=121 Identities=13% Similarity=0.191 Sum_probs=70.8
Q ss_pred CCccChhhHHHHHHHhhhc-CC-ceeecCCCC-----cccHHHHHHHHhhhCC-----ceEEEcccccccCHHHHHHHHh
Q 040341 82 SQKVSGDGLKNVYRSFISD-HP-IVSIEDPFD-----QDDWEHHAELTGKIGR-----HVQIVGDDLLVTNPKRVEKAIK 149 (251)
Q Consensus 82 ~~~~s~~elid~~~~l~~~-yp-I~~IEDP~~-----e~D~~~~~~l~~~lg~-----~~~ivgDdl~vtn~~~i~~~i~ 149 (251)
.+++++++.++-.+.|.++ +. |+++-|=|. -.|...+..|.+.+.. ++.+.-=+....+.+.++...+
T Consensus 183 ~rsr~~e~Vv~Ei~~l~~~g~~ei~l~d~n~~~yG~d~~~~~~l~~Ll~~l~~i~~l~~ir~~~~~p~~~~~ell~~m~~ 262 (502)
T PRK14326 183 EKDRRPGDILAEVQALVDEGVLEVTLLGQNVNAYGVSFGDRGAFSKLLRACGEIDGLERVRFTSPHPAEFTDDVIEAMAE 262 (502)
T ss_pred cccCCHHHHHHHHHHHHHCCCceEEEEeecccccccCCCCHHHHHHHHHHHHhcCCccEEEEeccChhhCCHHHHHHHHh
Confidence 3578899999988887664 33 444444332 1344556666655521 1222210001124455544434
Q ss_pred cc-CcceeEe-----------eccccccHHHHHHHHHHHHHc--CCc----EEEecCCCCCCchhHhhhhhh
Q 040341 150 EK-TCNALLL-----------KVNQIGSVTESIEAVKMSKRA--GWG----VMASHRSGETEDTFIADLSVG 203 (251)
Q Consensus 150 ~~-a~n~ilI-----------K~nqiGtlte~l~~~~~a~~~--g~~----~ivs~rsgEt~d~~iadLAva 203 (251)
.+ .|+.+.| ++|+--+..+..++++.+++. |+. +|+|. .|||+++|..-+-+.
T Consensus 263 ~g~~~~~l~lglQSgsd~iLk~m~R~~t~~~~~~~v~~lr~~~~~i~i~~~~IvGf-PgET~edf~~Tl~~i 333 (502)
T PRK14326 263 TPNVCPQLHMPLQSGSDRVLRAMRRSYRSERFLGILEKVRAAMPDAAITTDIIVGF-PGETEEDFQATLDVV 333 (502)
T ss_pred cCCcCCcEEeccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEEEEEEC-CCCCHHHHHHHHHHH
Confidence 33 2444432 357778999999999999986 543 47777 499999886555443
No 485
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=23.68 E-value=2.4e+02 Score=24.03 Aligned_cols=80 Identities=15% Similarity=0.159 Sum_probs=48.2
Q ss_pred ecCCCCcccHHHHHHHHhhhCCceEEEccccccc-CHHHHHHHHhccCcceeEeeccccccHHHHHHHHHHHHHcCCcEE
Q 040341 106 IEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVT-NPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAGWGVM 184 (251)
Q Consensus 106 IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vt-n~~~i~~~i~~~a~n~ilIK~nqiGtlte~l~~~~~a~~~g~~~i 184 (251)
+.+||..+-+.+..+..+..|-.+.++.-+-... -.+.++..+.. ..++++|-+...... .+.++.+++.|++++
T Consensus 9 ~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~-~vdgiIi~~~~~~~~---~~~i~~~~~~~iPvV 84 (273)
T cd06309 9 AESPWRTAETKSIKDAAEKRGFDLKFADAQQKQENQISAIRSFIAQ-GVDVIILAPVVETGW---DPVLKEAKAAGIPVI 84 (273)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHc-CCCEEEEcCCccccc---hHHHHHHHHCCCCEE
Confidence 5677777777777777777765665553221111 12334455544 578888876443222 244567788999987
Q ss_pred EecCC
Q 040341 185 ASHRS 189 (251)
Q Consensus 185 vs~rs 189 (251)
+-.+.
T Consensus 85 ~~~~~ 89 (273)
T cd06309 85 LVDRG 89 (273)
T ss_pred EEecC
Confidence 77664
No 486
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=23.58 E-value=6.7e+02 Score=24.17 Aligned_cols=137 Identities=11% Similarity=0.109 Sum_probs=71.9
Q ss_pred HHHHHHHhcCCcc-ceeeeeehhhhcccccCCc--ceeecCCCCCCCCCCccChhhHHHHHHHhhhcCCceeecCC----
Q 040341 37 LLKTAIAKGGYIG-KIVIGMDVAASEFYDSKDK--TYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHPIVSIEDP---- 109 (251)
Q Consensus 37 ~i~~Ai~~aGy~~-kI~iglD~Aase~~~~~~g--~Y~l~~~~~~~d~~~~~s~~elid~~~~l~~~ypI~~IEDP---- 109 (251)
.|..++++.||+- -+|+|-|..-..+.....| .++++ + -..+.+.+.+.|.++..++.++.||=.
T Consensus 19 ~L~~~L~~~G~~V~~fK~g~d~~D~~~~~~~~g~~~~~ld-------~-~~~~~~~i~~~~~~~~~~~D~viVEGagGl~ 90 (449)
T TIGR00379 19 GIMKALSRRKLRVQPFKVGPDYIDPMFHTQATGRPSRNLD-------S-FFMSEAQIQECFHRHSKGTDYSIIEGVRGLY 90 (449)
T ss_pred HHHHHHHHCCCceeEEccCCCCCCHHHHHHHhCCchhhCC-------c-ccCCHHHHHHHHHHhcccCCEEEEecCCccc
Confidence 3557788889984 3555644211111110001 12222 1 124567788888888778999998843
Q ss_pred -----CCcccHHHHHHHHhhhCCceEEEcccccc-cCHHHHHHHHhc--cCcceeEeeccccccHHHHHHHHHHHHH-cC
Q 040341 110 -----FDQDDWEHHAELTGKIGRHVQIVGDDLLV-TNPKRVEKAIKE--KTCNALLLKVNQIGSVTESIEAVKMSKR-AG 180 (251)
Q Consensus 110 -----~~e~D~~~~~~l~~~lg~~~~ivgDdl~v-tn~~~i~~~i~~--~a~n~ilIK~nqiGtlte~l~~~~~a~~-~g 180 (251)
+. +......+.+.++..+.+|.|.-.+ .+...+..+... ...+..-+=.||+.+-.......+..++ .|
T Consensus 91 ~g~~p~~--~~~s~adlAk~l~~pVILV~~~~~~~~t~~al~~~~~~~~~~i~i~GvIlN~v~~~~~~~~~~~~i~~~~g 168 (449)
T TIGR00379 91 DGISAIT--DYGSTASVAKALDAPIVLVMNCQRLSRSAAAIVLGYRSFDPGVKLKGVILNRVGSERHLEKLKIAVEPLRG 168 (449)
T ss_pred cCCCCCC--CCccHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHhhCCCCCEEEEEEECCCCHHHHHHHHHHHHHhCC
Confidence 32 2345667788888888888886321 123333333321 2233333446898774333332333332 46
Q ss_pred CcE
Q 040341 181 WGV 183 (251)
Q Consensus 181 ~~~ 183 (251)
+++
T Consensus 169 ipv 171 (449)
T TIGR00379 169 IPI 171 (449)
T ss_pred CCE
Confidence 654
No 487
>PRK07550 hypothetical protein; Provisional
Probab=23.56 E-value=5.8e+02 Score=23.40 Aligned_cols=96 Identities=17% Similarity=0.159 Sum_probs=56.7
Q ss_pred hhHHHHHHHhhhc-CCceeecCCCCcccHHHHHHHHhhhCCceEEE-cc--cccccCHHHHHHHHhccCcceeEeeccc-
Q 040341 88 DGLKNVYRSFISD-HPIVSIEDPFDQDDWEHHAELTGKIGRHVQIV-GD--DLLVTNPKRVEKAIKEKTCNALLLKVNQ- 162 (251)
Q Consensus 88 ~elid~~~~l~~~-ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~iv-gD--dl~vtn~~~i~~~i~~~a~n~ilIK~nq- 162 (251)
.+.+......+-+ -.-|.+++|.... +....+..|-++.-+ .| +-+.-+++.+++.++.+..-.+++-||.
T Consensus 100 ~~al~~~~~~l~~~gd~Vlv~~p~y~~----~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~P~NP 175 (386)
T PRK07550 100 NQAFWAAMVTLAGAGDEVILPLPWYFN----HKMWLDMLGIRPVYLPCDEGPGLLPDPAAAEALITPRTRAIALVTPNNP 175 (386)
T ss_pred HHHHHHHHHHhcCCCCEEEEcCCCCcc----hHHHHHhcCCEEEEEecCCCcCCCCCHHHHHHHhcccCcEEEEeCCCCC
Confidence 4555555544433 2368889996622 223334454443232 33 1233478889988876544446666753
Q ss_pred cc---cHHHHHHHHHHHHHcCCcEEEec
Q 040341 163 IG---SVTESIEAVKMSKRAGWGVMASH 187 (251)
Q Consensus 163 iG---tlte~l~~~~~a~~~g~~~ivs~ 187 (251)
.| +..+..+++++|+++|+.+++-.
T Consensus 176 tG~~~~~~~~~~i~~~~~~~~~~iI~Dd 203 (386)
T PRK07550 176 TGVVYPPELLHELYDLARRHGIALILDE 203 (386)
T ss_pred CCcccCHHHHHHHHHHHHHcCeEEEEec
Confidence 33 34467889999999998776654
No 488
>PRK06207 aspartate aminotransferase; Provisional
Probab=23.50 E-value=5.9e+02 Score=23.75 Aligned_cols=97 Identities=18% Similarity=0.130 Sum_probs=57.5
Q ss_pred hhhHHHHHHHhh-hcCCceeecCCCCcccHHHHHHHHhhhCCceE-EEccc-----ccccCHHHHHHHHhccCcce-eEe
Q 040341 87 GDGLKNVYRSFI-SDHPIVSIEDPFDQDDWEHHAELTGKIGRHVQ-IVGDD-----LLVTNPKRVEKAIKEKTCNA-LLL 158 (251)
Q Consensus 87 ~~elid~~~~l~-~~ypI~~IEDP~~e~D~~~~~~l~~~lg~~~~-ivgDd-----l~vtn~~~i~~~i~~~a~n~-ilI 158 (251)
..+.+......+ +.-.-+.+++|... .+..+.+..|.++. |=.|. -+--+++.+++++..+ ... ++.
T Consensus 111 a~~al~~~~~~l~~~Gd~Vlv~~P~y~----~~~~~~~~~g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~~~-~k~v~l~ 185 (405)
T PRK06207 111 TQGALFLAVAATVARGDKVAIVQPDYF----ANRKLVEFFEGEMVPVQLDYLSADKRAGLDLDQLEEAFKAG-VRVFLFS 185 (405)
T ss_pred cHHHHHHHHHHhcCCCCEEEEeCCCch----hHHHHHHHcCCEEEEEeccccCcccCCCcCHHHHHHhhhhc-CeEEEEC
Confidence 455566555433 33347888999764 35555566655432 22221 1334788898887654 343 345
Q ss_pred eccc-cc---cHHHHHHHHHHHHHcCCcEEEecC
Q 040341 159 KVNQ-IG---SVTESIEAVKMSKRAGWGVMASHR 188 (251)
Q Consensus 159 K~nq-iG---tlte~l~~~~~a~~~g~~~ivs~r 188 (251)
-||- .| +..+..+++++|+++++.+++-.-
T Consensus 186 ~P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~ 219 (405)
T PRK06207 186 NPNNPAGVVYSAEEIAQIAALARRYGATVIVDQL 219 (405)
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecc
Confidence 5632 33 344678889999999987765443
No 489
>PRK13938 phosphoheptose isomerase; Provisional
Probab=23.42 E-value=1.1e+02 Score=26.14 Aligned_cols=50 Identities=18% Similarity=0.246 Sum_probs=37.1
Q ss_pred eeEeeccccccHHHHHHHHHHHHHcCCcEEEecCCCCCCchhHhhhhhhc
Q 040341 155 ALLLKVNQIGSVTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGL 204 (251)
Q Consensus 155 ~ilIK~nqiGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d~~iadLAva~ 204 (251)
-++|=.++-|.=.+++++++.|+++|.+++.=....++.-.-.+|..+-.
T Consensus 115 DllI~iS~SG~t~~vi~a~~~Ak~~G~~vI~iT~~~~s~La~~aD~~l~v 164 (196)
T PRK13938 115 DTLFAISTSGNSMSVLRAAKTARELGVTVVAMTGESGGQLAEFADFLINV 164 (196)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCChhhhhCCEEEEe
Confidence 35666788899999999999999999998765555555555556655543
No 490
>PRK08462 biotin carboxylase; Validated
Probab=23.42 E-value=1.3e+02 Score=28.63 Aligned_cols=69 Identities=19% Similarity=0.293 Sum_probs=41.6
Q ss_pred HHHHHHHHHHcCCcEEEecCCCCCCchhHhhhhhhcccCccccCCCCchhHHHHhhHHHHHHHHhCCCccccCc
Q 040341 169 SIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGPAAIYAGT 242 (251)
Q Consensus 169 ~l~~~~~a~~~g~~~ivs~rsgEt~d~~iadLAva~~~~~ik~G~~~r~Er~aKyN~llrie~~l~~~~~~~~~ 242 (251)
++++++.|++.|+.+++-+...+.. ..++...-..+..|.....+.....++|+.|.++.+-.++..+.
T Consensus 16 ~~~~~~~~~~~G~~~v~~~~~~d~~-----~~~~~~ad~~~~~~~~~~~~~y~~~~~l~~~~~~~~~D~i~pg~ 84 (445)
T PRK08462 16 ALRAIRTIQEMGKEAIAIYSTADKD-----ALYLKYADAKICIGGAKSSESYLNIPAIISAAEIFEADAIFPGY 84 (445)
T ss_pred HHHHHHHHHHcCCCEEEEechhhcC-----CchhhhCCEEEEeCCCchhcccCCHHHHHHHHHHcCCCEEEECC
Confidence 7899999999999998776433220 11122222333444333344444457889988887766666553
No 491
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=23.40 E-value=1.5e+02 Score=29.09 Aligned_cols=73 Identities=16% Similarity=0.180 Sum_probs=50.0
Q ss_pred HHHHHHHHhccCcceeEeeccccccHHHHHHHHHHHHHc--CCcEEEe-cCCCCCCchhHhhhhhhcccCccccCCCCch
Q 040341 141 PKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRA--GWGVMAS-HRSGETEDTFIADLSVGLATGQIKTGAPCRS 217 (251)
Q Consensus 141 ~~~i~~~i~~~a~n~ilIK~nqiGtlte~l~~~~~a~~~--g~~~ivs-~rsgEt~d~~iadLAva~~~~~ik~G~~~r~ 217 (251)
+++++..++. -+++|.|-..+ |--...+++++..++. +..+|+| ..+.|+ +--+...|+..||.|.=.++
T Consensus 227 ~~ra~~Lv~a-GVd~i~~D~a~-g~~~~~~~~i~~i~~~~~~~~vi~g~~~t~~~-----~~~l~~~G~d~i~vg~g~Gs 299 (475)
T TIGR01303 227 GGKAKALLDA-GVDVLVIDTAH-GHQVKMISAIKAVRALDLGVPIVAGNVVSAEG-----VRDLLEAGANIIKVGVGPGA 299 (475)
T ss_pred HHHHHHHHHh-CCCEEEEeCCC-CCcHHHHHHHHHHHHHCCCCeEEEeccCCHHH-----HHHHHHhCCCEEEECCcCCc
Confidence 4566666654 57889999888 7777888888888887 7889997 444444 34444678888885554444
Q ss_pred hHH
Q 040341 218 ERL 220 (251)
Q Consensus 218 Er~ 220 (251)
-++
T Consensus 300 ~~t 302 (475)
T TIGR01303 300 MCT 302 (475)
T ss_pred ccc
Confidence 443
No 492
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=23.40 E-value=3.1e+02 Score=25.95 Aligned_cols=110 Identities=17% Similarity=0.109 Sum_probs=63.3
Q ss_pred hhhHHHHHHHhhhcCC-ceeecCCCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhcc----CcceeEeecc
Q 040341 87 GDGLKNVYRSFISDHP-IVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEK----TCNALLLKVN 161 (251)
Q Consensus 87 ~~elid~~~~l~~~yp-I~~IEDP~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~----a~n~ilIK~n 161 (251)
...++- +..++..+. +++=++---..|=-+=.++.... .+.+++....=.-+|+.|+..+..+ .....++-.|
T Consensus 61 ~aN~la-l~~~~~~~~~vi~~~~aHi~~~E~Ga~~~~~~~-~~~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~ 138 (342)
T COG2008 61 QANQLA-LAAHCQPGESVICHETAHIYTDECGAPEFFGGG-QKLPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLEN 138 (342)
T ss_pred HHHHHH-HHHhcCCCCeEEEeccccceecccCcHHHHcCC-ceeccCCCCCCCcCHHHHHHhhcCCCcccCCCceEEEee
Confidence 334444 555667766 44444444333333333333332 2555665343455899999887742 2333333333
Q ss_pred c------cccHHHHHHHHHHHHHcCCcEEEecCCCCCCchhHhhhhhhcc
Q 040341 162 Q------IGSVTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLA 205 (251)
Q Consensus 162 q------iGtlte~l~~~~~a~~~g~~~ivs~rsgEt~d~~iadLAva~~ 205 (251)
| +-++.|.-++.+.|+++|+++-+-. ..+++-+|+++
T Consensus 139 ~~te~GtVy~l~el~~i~~~~k~~~l~LHmDG-------AR~~nA~valg 181 (342)
T COG2008 139 TATEGGTVYPLDELEAISAVCKEHGLPLHMDG-------ARLANALVALG 181 (342)
T ss_pred ccCCCceecCHHHHHHHHHHHHHhCCceeech-------HHHHHHHHHcC
Confidence 3 3467899999999999999996643 34566666654
No 493
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=23.27 E-value=4.8e+02 Score=22.54 Aligned_cols=64 Identities=19% Similarity=0.182 Sum_probs=50.4
Q ss_pred HhhhCCceEEEcccccccCHHHHHHHHhccCcceeEeeccccccHHHHHHHHHHHHHcC--CcEEEecC
Q 040341 122 TGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAG--WGVMASHR 188 (251)
Q Consensus 122 ~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilIK~nqiGtlte~l~~~~~a~~~g--~~~ivs~r 188 (251)
-+.-|-++.-.|-|+ .++++..++.+..++.|.|......++..+.+.++..++.| ..+|||.+
T Consensus 112 l~~~G~~Vi~LG~~v---p~e~~v~~~~~~~~~~V~lS~~~~~~~~~~~~~i~~L~~~~~~~~i~vGG~ 177 (213)
T cd02069 112 LSNNGYEVIDLGVMV---PIEKILEAAKEHKADIIGLSGLLVPSLDEMVEVAEEMNRRGIKIPLLIGGA 177 (213)
T ss_pred HHhCCCEEEECCCCC---CHHHHHHHHHHcCCCEEEEccchhccHHHHHHHHHHHHhcCCCCeEEEECh
Confidence 344477888888874 57888888888899999999877788888888888877775 66688885
No 494
>cd07088 ALDH_LactADH-AldA Escherichia coli lactaldehyde dehydrogenase AldA-like. Lactaldehyde dehydrogenase from Escherichia coli (AldA, LactADH, EC=1.2.1.22), an NAD(+)-dependent enzyme involved in the metabolism of L-fucose and L-rhamnose, and other similar sequences are present in this CD.
Probab=23.13 E-value=94 Score=29.87 Aligned_cols=73 Identities=16% Similarity=0.207 Sum_probs=43.1
Q ss_pred HHHhccCcceeEeeccccccHHHHHHHHHHHHHcCCcE----EEecCCCCCCchhHhhhhhhcccCccccCCCCchhHHH
Q 040341 146 KAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAGWGV----MASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLA 221 (251)
Q Consensus 146 ~~i~~~a~n~ilIK~nqiGtlte~l~~~~~a~~~g~~~----ivs~rsgEt~d~~iadLAva~~~~~ik~G~~~r~Er~a 221 (251)
-+..+.+.|++++||+.....+ +..++++.+++|++- +|.....++.+..+.|-. -..-..+|++.-+.++.
T Consensus 154 ~~~AL~aGN~VVlKps~~~p~~-~~~l~~~~~~aglP~gvv~~v~g~~~~~~~~l~~~~~---v~~V~ftGs~~~g~~i~ 229 (468)
T cd07088 154 LAPALVTGNTIVIKPSEETPLN-ALEFAELVDEAGLPAGVLNIVTGRGSVVGDALVAHPK---VGMISLTGSTEAGQKIM 229 (468)
T ss_pred HHHHHHcCCEEEEECCCcchHH-HHHHHHHHHHcCcCccceEEEecCchHHHHHHhcCCC---CCEEEEECcHHHHHHHH
Confidence 3455779999999999876555 456778888888763 332211112222221111 12346788877666664
Q ss_pred H
Q 040341 222 K 222 (251)
Q Consensus 222 K 222 (251)
+
T Consensus 230 ~ 230 (468)
T cd07088 230 E 230 (468)
T ss_pred H
Confidence 4
No 495
>cd07113 ALDH_PADH_NahF Escherichia coli NAD+-dependent phenylacetaldehyde dehydrogenase PadA-like. NAD+-dependent, homodimeric, phenylacetaldehyde dehydrogenase (PADH, EC=1.2.1.39) PadA of Escherichia coli involved in the catabolism of 2-phenylethylamine, and other related sequences, are present in this CD. Also included is the Pseudomonas fluorescens ST StyD PADH involved in styrene catabolism, the Sphingomonas sp. LB126 FldD protein involved in fluorene degradation, and the Novosphingobium aromaticivorans NahF salicylaldehyde dehydrogenase involved in the NAD+-dependent conversion of salicylaldehyde to salicylate.
Probab=23.05 E-value=1e+02 Score=29.84 Aligned_cols=69 Identities=13% Similarity=0.231 Sum_probs=43.5
Q ss_pred HHhccCcceeEeeccccccHHHHHHHHHHHHHcCCcE----EEecCCCCCCchhHhhhhhhcc-c-CccccCCCCchhHH
Q 040341 147 AIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAGWGV----MASHRSGETEDTFIADLSVGLA-T-GQIKTGAPCRSERL 220 (251)
Q Consensus 147 ~i~~~a~n~ilIK~nqiGtlte~l~~~~~a~~~g~~~----ivs~rsgEt~d~~iadLAva~~-~-~~ik~G~~~r~Er~ 220 (251)
+..+.+.|++++||+.....+ +..+.++++++|++- +|... ++ +.+..+.-. . .-..+|++.-+.++
T Consensus 164 ~~ALaaGN~VvlKPs~~tp~~-~~~l~~~~~~aglP~gvv~~v~g~-~~-----~~~~L~~~~~v~~V~fTGS~~~G~~i 236 (477)
T cd07113 164 GAALATGCTIVIKPSEFTPLT-LLRVAELAKEAGIPDGVLNVVNGK-GA-----VGAQLISHPDVAKVSFTGSVATGKKI 236 (477)
T ss_pred HHHHHcCCEEEEECCCCCcHH-HHHHHHHHHHcCcCCCcEEEEecC-ch-----HHHHHhcCCCCCEEEEECcHHHHHHH
Confidence 455679999999999876665 556788899998763 33321 12 223222221 2 34478888777666
Q ss_pred HH
Q 040341 221 AK 222 (251)
Q Consensus 221 aK 222 (251)
+|
T Consensus 237 ~~ 238 (477)
T cd07113 237 GR 238 (477)
T ss_pred HH
Confidence 55
No 496
>PF03465 eRF1_3: eRF1 domain 3; InterPro: IPR005142 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins which may also be involved in translation termination but this awaits experimental verification.; PDB: 3OBY_A 3E1Y_D 1DT9_A 2KTU_A 2KTV_A 3IR9_A 3E20_H 3OBW_A 3AGJ_F 3MCA_B ....
Probab=23.02 E-value=2.8e+02 Score=21.42 Aligned_cols=56 Identities=21% Similarity=0.241 Sum_probs=37.6
Q ss_pred cccccccCHHHHHHHHhccCcceeEeec--cccccHH-H--------------HHHHHHHHHHcCCcE-EEecC
Q 040341 133 GDDLLVTNPKRVEKAIKEKTCNALLLKV--NQIGSVT-E--------------SIEAVKMSKRAGWGV-MASHR 188 (251)
Q Consensus 133 gDdl~vtn~~~i~~~i~~~a~n~ilIK~--nqiGtlt-e--------------~l~~~~~a~~~g~~~-ivs~r 188 (251)
++++.+--++.+.+|++.++...++|-= .+.+... + .-++++.|++.|..+ +||+.
T Consensus 18 ~~~~~~yG~~eV~~Al~~GaV~~LlI~d~l~~~~~~~r~~~~~~~~~~~~~~~i~~l~~~a~~~g~~v~iis~~ 91 (113)
T PF03465_consen 18 DPGLAVYGIEEVKKALEMGAVETLLISDDLFRSRDVERCKCPECGGELEVVELIEELIELAEQSGAKVEIISSE 91 (113)
T ss_dssp TCSSEEESHHHHHHHHHTT-EEEEEEEHHHHTESCHHHHHSTTTHSEEEEEEHHHHHHHHHHHTTSEEEEE-TT
T ss_pred CCCcEEECHHHHHHHHHhCCCcEEEEecccccccceeccccccccchhhhHHHHHHHHHHHHHcCCEEEEEcCC
Confidence 3455666788889999999999988863 2333221 1 567888899999988 55543
No 497
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=22.98 E-value=3.4e+02 Score=24.52 Aligned_cols=86 Identities=19% Similarity=0.218 Sum_probs=52.1
Q ss_pred ceeecCCCCcccHHHHHHHHhhhCCceEEEc-ccccccCHHHHHHHHhccCcceeEee-c-cccccHHHHHHHHHHHHHc
Q 040341 103 IVSIEDPFDQDDWEHHAELTGKIGRHVQIVG-DDLLVTNPKRVEKAIKEKTCNALLLK-V-NQIGSVTESIEAVKMSKRA 179 (251)
Q Consensus 103 I~~IEDP~~e~D~~~~~~l~~~lg~~~~ivg-Ddl~vtn~~~i~~~i~~~a~n~ilIK-~-nqiGtlte~l~~~~~a~~~ 179 (251)
-+.+-.|-+..-...|..+.+..|.++..+- |+-..-+++.+++++..+ ...+.+- | |-.|.+...-++.++|+++
T Consensus 88 ~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~-~~~v~~~~~~n~tG~~~~~~~i~~l~~~~ 166 (376)
T TIGR01977 88 HVITTPMEHNSVARPLECLKEQIGVEITIVKCDNEGLISPERIKRAIKTN-TKLIVVSHASNVTGTILPIEEIGELAQEN 166 (376)
T ss_pred EEEECcchhhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHHhcCCC-CeEEEEECCCCCccccCCHHHHHHHHHHc
Confidence 4444444333334556666666665554442 332334788999888543 3344443 3 3467777777888999999
Q ss_pred CCcEEEecCC
Q 040341 180 GWGVMASHRS 189 (251)
Q Consensus 180 g~~~ivs~rs 189 (251)
|+.++|-.-.
T Consensus 167 ~~~livD~a~ 176 (376)
T TIGR01977 167 GIFFILDAAQ 176 (376)
T ss_pred CCEEEEEhhh
Confidence 9888775543
No 498
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=22.95 E-value=5e+02 Score=22.51 Aligned_cols=72 Identities=15% Similarity=0.146 Sum_probs=45.7
Q ss_pred CccChhhHHHHHHHhhhcCCceeecC--CCCcccHHHHHHHHhhhCCceEEEcccccccCHHHHHHHHhccCcceeEe
Q 040341 83 QKVSGDGLKNVYRSFISDHPIVSIED--PFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLL 158 (251)
Q Consensus 83 ~~~s~~elid~~~~l~~~ypI~~IED--P~~e~D~~~~~~l~~~lg~~~~ivgDdl~vtn~~~i~~~i~~~a~n~ilI 158 (251)
...++.++++.|.+++++.=++.|.- ....-|++...++.+....++++.|- +.+++++++..+.| ++.+++
T Consensus 144 ~~~~~~~~~~~~~~~~~~li~~di~~~G~~~g~~~~~~~~i~~~~~ipvi~~GG---i~s~edi~~l~~~G-~~~viv 217 (233)
T cd04723 144 DFIGPEELLRRLAKWPEELIVLDIDRVGSGQGPDLELLERLAARADIPVIAAGG---VRSVEDLELLKKLG-ASGALV 217 (233)
T ss_pred CcCCHHHHHHHHHHhCCeEEEEEcCccccCCCcCHHHHHHHHHhcCCCEEEeCC---CCCHHHHHHHHHcC-CCEEEE
Confidence 34578888887777533222334421 12345788888888887556655554 68999999988876 444443
No 499
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=22.93 E-value=3.3e+02 Score=22.86 Aligned_cols=15 Identities=0% Similarity=-0.113 Sum_probs=7.8
Q ss_pred hhHHHHHHHhhhcCC
Q 040341 88 DGLKNVYRSFISDHP 102 (251)
Q Consensus 88 ~elid~~~~l~~~yp 102 (251)
.+++...++.+++++
T Consensus 20 ~~~~~~~~~~~~~~g 34 (270)
T cd06294 20 IEVLRGISAVANENG 34 (270)
T ss_pred HHHHHHHHHHHHHCC
Confidence 344555555555555
No 500
>PRK11096 ansB L-asparaginase II; Provisional
Probab=22.89 E-value=3.7e+02 Score=25.29 Aligned_cols=83 Identities=11% Similarity=0.116 Sum_probs=52.4
Q ss_pred CHHHHHHHHhccCcceeEeeccccccH-HHHHHHHHHHHHcCCcEEEecCCCC--CCchhHhhhhhhcccCccccCCCCc
Q 040341 140 NPKRVEKAIKEKTCNALLLKVNQIGSV-TESIEAVKMSKRAGWGVMASHRSGE--TEDTFIADLSVGLATGQIKTGAPCR 216 (251)
Q Consensus 140 n~~~i~~~i~~~a~n~ilIK~nqiGtl-te~l~~~~~a~~~g~~~ivs~rsgE--t~d~~iadLAva~~~~~ik~G~~~r 216 (251)
+++.++..++.+ ..+++|---=.|.+ .+.+++++.|.++|+.|+++.|... +....-++ ....|.|-.|++..
T Consensus 245 ~~~~l~~~l~~~-~~GiVl~g~G~Gn~~~~~~~~l~~a~~~GipVV~~Sqc~~G~v~~~~~~~---l~~~G~I~~g~lt~ 320 (347)
T PRK11096 245 SDLPAKALVDAG-YDGIVSAGVGNGNLYKTVFDTLATAAKNGVAVVRSSRVPTGATTQDAEVD---DAKYGFVASGTLNP 320 (347)
T ss_pred CHHHHHHHHhcc-CCEEEEEeECCCCCCHHHHHHHHHHHHCCCEEEEeCCCCCCCcCcccccc---hhhCCEEECCCCCH
Confidence 566677666543 56777664334444 4788899999999999999998744 32121112 24467787887765
Q ss_pred hhHHHHhhHH
Q 040341 217 SERLAKYNQL 226 (251)
Q Consensus 217 ~Er~aKyN~l 226 (251)
.--..|.-=+
T Consensus 321 ekArikL~l~ 330 (347)
T PRK11096 321 QKARVLLQLA 330 (347)
T ss_pred HHHHHHHHHH
Confidence 5544444433
Done!