RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 040341
(251 letters)
>gnl|CDD|215095 PLN00191, PLN00191, enolase.
Length = 457
Score = 476 bits (1228), Expect = e-170
Identities = 199/247 (80%), Positives = 215/247 (87%), Gaps = 3/247 (1%)
Query: 3 LQAVIKKKYGQDATNVGDEGGFAPNIQESYEGFELLKTAIAKGGYIGKIVIGMDVAASEF 62
L+AVIKKKYGQDA NVGDEGGFAPNIQ++ EG ELLK AI K GY GKI IGMDVAASEF
Sbjct: 214 LKAVIKKKYGQDACNVGDEGGFAPNIQDNKEGLELLKEAIEKAGYTGKIKIGMDVAASEF 273
Query: 63 YDSKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHHAELT 122
Y +KDK YDL+FKEENNDGS K SGD L ++Y+ F+SD+PIVSIEDPFDQDDWEH A+LT
Sbjct: 274 Y-TKDKKYDLDFKEENNDGSNKKSGDELIDLYKEFVSDYPIVSIEDPFDQDDWEHWAKLT 332
Query: 123 GKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAGWG 182
VQIVGDDLLVTNPKRV KAI+EK CNALLLKVNQIG+VTESIEAVKMSK AGWG
Sbjct: 333 SLE--DVQIVGDDLLVTNPKRVAKAIQEKACNALLLKVNQIGTVTESIEAVKMSKAAGWG 390
Query: 183 VMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGPAAIYAGT 242
VM SHRSGETED+FIADL+VGLATGQIKTGAPCRSERLAKYNQLLRIEEELG A+YAG
Sbjct: 391 VMTSHRSGETEDSFIADLAVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGDEAVYAGE 450
Query: 243 KFRAPVE 249
FR PV
Sbjct: 451 NFRKPVW 457
>gnl|CDD|109180 pfam00113, Enolase_C, Enolase, C-terminal TIM barrel domain.
Length = 296
Score = 429 bits (1104), Expect = e-154
Identities = 169/246 (68%), Positives = 196/246 (79%)
Query: 3 LQAVIKKKYGQDATNVGDEGGFAPNIQESYEGFELLKTAIAKGGYIGKIVIGMDVAASEF 62
L++VIK KYGQDATNVGDEGGFAPNIQ + E +L+ AI K GY GK+ I MDVA+SEF
Sbjct: 51 LKSVIKAKYGQDATNVGDEGGFAPNIQSNKEALDLIVEAIEKAGYTGKVKIAMDVASSEF 110
Query: 63 YDSKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHHAELT 122
Y+ KD YDL+FK +D S+ ++ D L ++Y+ I +PIVSIEDPFD+DDWE +LT
Sbjct: 111 YNKKDGKYDLDFKNPKSDPSKWLTSDQLADLYKELIKKYPIVSIEDPFDEDDWEAWKKLT 170
Query: 123 GKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAGWG 182
+G +QIVGDDL VTNPKR+ KAI++K CN+LLLKVNQIGSVTES+ AVKM+K AGWG
Sbjct: 171 ASLGDKIQIVGDDLTVTNPKRIAKAIEKKACNSLLLKVNQIGSVTESLAAVKMAKDAGWG 230
Query: 183 VMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGPAAIYAGT 242
VM SHRSGETEDTFIADL VGL GQIKTGAPCRSERLAKYNQLLRIEEELG A YAG
Sbjct: 231 VMVSHRSGETEDTFIADLVVGLNAGQIKTGAPCRSERLAKYNQLLRIEEELGSKAKYAGR 290
Query: 243 KFRAPV 248
FR P
Sbjct: 291 NFRKPQ 296
>gnl|CDD|240259 PTZ00081, PTZ00081, enolase; Provisional.
Length = 439
Score = 426 bits (1096), Expect = e-150
Identities = 171/239 (71%), Positives = 199/239 (83%)
Query: 3 LQAVIKKKYGQDATNVGDEGGFAPNIQESYEGFELLKTAIAKGGYIGKIVIGMDVAASEF 62
L++VIKKKYG DATNVGDEGGFAPNI++ E +LL AI K GY GK+ I MDVAASEF
Sbjct: 199 LKSVIKKKYGLDATNVGDEGGFAPNIKDPEEALDLLVEAIKKAGYEGKVKICMDVAASEF 258
Query: 63 YDSKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHHAELT 122
YD + K YDL+FK NND S K++G+ L +Y + +PIVSIEDPFDQDDWE +A+LT
Sbjct: 259 YDKEKKVYDLDFKNPNNDKSNKLTGEELVELYLDLVKKYPIVSIEDPFDQDDWEAYAKLT 318
Query: 123 GKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAGWG 182
IG+ VQIVGDDLLVTNP R++KAI++K CNALLLKVNQIG+VTE+IEA K++++ GWG
Sbjct: 319 AAIGQKVQIVGDDLLVTNPTRIKKAIEKKACNALLLKVNQIGTVTEAIEAAKLAQKNGWG 378
Query: 183 VMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGPAAIYAG 241
VM SHRSGETEDTFIADL VGL TGQIKTGAPCRSERLAKYNQLLRIEEELG A+YAG
Sbjct: 379 VMVSHRSGETEDTFIADLVVGLGTGQIKTGAPCRSERLAKYNQLLRIEEELGSNAVYAG 437
>gnl|CDD|239429 cd03313, enolase, Enolase: Enolases are homodimeric enzymes that
catalyse the reversible dehydration of
2-phospho-D-glycerate to phosphoenolpyruvate as part of
the glycolytic and gluconeogenesis pathways. The
reaction is facilitated by the presence of metal ions.
Length = 408
Score = 396 bits (1021), Expect = e-139
Identities = 141/232 (60%), Positives = 176/232 (75%), Gaps = 9/232 (3%)
Query: 3 LQAVIKKKYGQDATNVGDEGGFAPNIQESYEGFELLKTAIAKGGYIG--KIVIGMDVAAS 60
L+ V+KKK G ATNVGDEGGFAPN+ + E +LL AI K GY KI I +DVAAS
Sbjct: 184 LKKVLKKKGGLLATNVGDEGGFAPNLSSNEEALDLLVEAIEKAGYEPGKKIAIALDVAAS 243
Query: 61 EFYDSKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHHAE 120
EFYD YD +D +K++ + L + Y+ + +PIVSIEDPFD+DDWE A+
Sbjct: 244 EFYDEGKYVYD-------SDEGKKLTSEELIDYYKELVKKYPIVSIEDPFDEDDWEGWAK 296
Query: 121 LTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAG 180
LT K+G +QIVGDDL VTNP+R++K I++K NALL+KVNQIG++TE+IEA+K++K+ G
Sbjct: 297 LTAKLGDKIQIVGDDLFVTNPERLKKGIEKKAANALLIKVNQIGTLTETIEAIKLAKKNG 356
Query: 181 WGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEE 232
+GV+ SHRSGETEDTFIADL+V L GQIKTGAPCRSER AKYNQLLRIEEE
Sbjct: 357 YGVVVSHRSGETEDTFIADLAVALGAGQIKTGAPCRSERTAKYNQLLRIEEE 408
>gnl|CDD|234617 PRK00077, eno, enolase; Provisional.
Length = 425
Score = 348 bits (895), Expect = e-120
Identities = 125/244 (51%), Positives = 170/244 (69%), Gaps = 14/244 (5%)
Query: 3 LQAVIKKKYGQDATNVGDEGGFAPNIQESYEGFELLKTAIAKGGYI-GK-IVIGMDVAAS 60
L+ V+K+K G +T VGDEGGFAPN++ + E +L+ AI K GY G+ I + +D AAS
Sbjct: 189 LKKVLKEK-GL-STAVGDEGGFAPNLKSNEEALDLILEAIEKAGYKPGEDIALALDCAAS 246
Query: 61 EFYDSKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHHAE 120
EFY KD Y L + ++ + + + + +PIVSIED D++DWE
Sbjct: 247 EFY--KDGKYVL--------EGEGLTSEEMIDYLAELVDKYPIVSIEDGLDENDWEGWKL 296
Query: 121 LTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAG 180
LT K+G VQ+VGDDL VTN KR++K I++ N++L+KVNQIG++TE+++A++++KRAG
Sbjct: 297 LTEKLGDKVQLVGDDLFVTNTKRLKKGIEKGAANSILIKVNQIGTLTETLDAIELAKRAG 356
Query: 181 WGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGPAAIYA 240
+ + SHRSGETEDT IADL+V GQIKTG+ RSER+AKYNQLLRIEEELG AA YA
Sbjct: 357 YTAVVSHRSGETEDTTIADLAVATNAGQIKTGSLSRSERIAKYNQLLRIEEELGDAARYA 416
Query: 241 GTKF 244
G K
Sbjct: 417 GKKA 420
>gnl|CDD|223226 COG0148, Eno, Enolase [Carbohydrate transport and metabolism].
Length = 423
Score = 314 bits (807), Expect = e-107
Identities = 125/244 (51%), Positives = 166/244 (68%), Gaps = 14/244 (5%)
Query: 3 LQAVIKKKYGQDATNVGDEGGFAPNIQESYEGFELLKTAIAKGGYIGK--IVIGMDVAAS 60
L+ ++K+K +T VGDEGGFAPN++ + E ++L AI + GY I + +DVAAS
Sbjct: 188 LKKLLKEK--GLSTGVGDEGGFAPNLKSNEEALDILVEAIEEAGYEPGEDIALALDVAAS 245
Query: 61 EFYDSKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHHAE 120
EFY D Y L + ++ + L Y + +PIVSIEDP +DDWE AE
Sbjct: 246 EFYK--DGKYVLEGE--------SLTSEELIEYYLELVKKYPIVSIEDPLSEDDWEGFAE 295
Query: 121 LTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAG 180
LT ++G VQIVGDDL VTNPKR++K I++ NA+L+K NQIG++TE++EA+ ++K AG
Sbjct: 296 LTKRLGDKVQIVGDDLFVTNPKRLKKGIEKGAANAILIKPNQIGTLTETLEAINLAKDAG 355
Query: 181 WGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGPAAIYA 240
+ + SHRSGETEDT IADL+V GQIKTG+ RSER+AKYN+LLRIEEELG A YA
Sbjct: 356 YTAVISHRSGETEDTTIADLAVATNAGQIKTGSLSRSERVAKYNELLRIEEELGDKARYA 415
Query: 241 GTKF 244
G K
Sbjct: 416 GIKE 419
>gnl|CDD|213580 TIGR01060, eno, phosphopyruvate hydratase. Alternate name: enolase
[Energy metabolism, Glycolysis/gluconeogenesis].
Length = 425
Score = 308 bits (792), Expect = e-104
Identities = 116/247 (46%), Positives = 163/247 (65%), Gaps = 10/247 (4%)
Query: 3 LQAVIKKKYGQDATNVGDEGGFAPNIQESYEGFELLKTAIAKGGY-IGK-IVIGMDVAAS 60
L+ ++K+K AT VGDEGGFAPN+ + E E++ AI K GY G+ + + +D AAS
Sbjct: 186 LKKLLKEKG--LATGVGDEGGFAPNLASNEEALEIIVEAIEKAGYKPGEDVALALDCAAS 243
Query: 61 EFYDSKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHHAE 120
EFYD +D Y + + + + Y + +PI+SIED ++DWE AE
Sbjct: 244 EFYDEEDGKYVYKGENKQLTSEEMIE------YYEELVEKYPIISIEDGLSEEDWEGWAE 297
Query: 121 LTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAG 180
LT ++G VQIVGDDL VTN + + + I+ N++L+K NQIG++TE+++A++++K+AG
Sbjct: 298 LTKRLGDKVQIVGDDLFVTNTEILREGIEMGVANSILIKPNQIGTLTETLDAIELAKKAG 357
Query: 181 WGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGPAAIYA 240
+ + SHRSGETEDT IADL+V GQIKTG+ RSER+AKYNQLLRIEEELG +A YA
Sbjct: 358 YTAVISHRSGETEDTTIADLAVATNAGQIKTGSLSRSERIAKYNQLLRIEEELGDSARYA 417
Query: 241 GTKFRAP 247
G
Sbjct: 418 GKNSFYR 424
>gnl|CDD|238188 cd00308, enolase_like, Enolase-superfamily, characterized by the
presence of an enolate anion intermediate which is
generated by abstraction of the alpha-proton of the
carboxylate substrate by an active site residue and is
stabilized by coordination to the essential Mg2+ ion.
Enolase superfamily contains different enzymes, like
enolases, glutarate-, fucanate- and galactonate
dehydratases, o-succinylbenzoate synthase, N-acylamino
acid racemase, L-alanine-DL-glutamate epimerase,
mandelate racemase, muconate lactonizing enzyme and
3-methylaspartase.
Length = 229
Score = 74.3 bits (183), Expect = 6e-16
Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 4/106 (3%)
Query: 100 DHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 159
+ + IE+P DD E +A L + G + I D+ + T +E A++ + L +K
Sbjct: 119 KYGLAWIEEPCAPDDLEGYAALRRRTG--IPIAADESVTTVDDALE-ALELGAVDILQIK 175
Query: 160 VNQIGSVTESIEAVKMSKRAGWGVMASHRSG-ETEDTFIADLSVGL 204
++G +TES A +++ G VM L+ L
Sbjct: 176 PTRVGGLTESRRAADLAEAFGIRVMVHGTLESSIGTAAALHLAAAL 221
>gnl|CDD|239437 cd03321, mandelate_racemase, Mandelate racemase (MR) catalyzes the
Mg2+-dependent 1,1-proton transfer reaction that
interconverts the enantiomers of mandelic acid. MR is
the first enzyme in the bacterial pathway that converts
mandelic acid to benzoic acid and allows this pathway to
utilize either enantiomer of mandelate. MR belongs to
the enolase superfamily of enzymes, characterized by the
presence of an enolate anion intermediate which is
generated by abstraction of the alpha-proton of the
carboxylate substrate by an active site residue and is
stabilized by coordination to the essential Mg2+ ion.
Length = 355
Score = 42.1 bits (99), Expect = 1e-04
Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Query: 98 ISDHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALL 157
+ + IE+P Q D+E HA + + VQ+ G++ L P+ + KA+ C+ ++
Sbjct: 209 LDQEGLTWIEEPTLQHDYEGHARIASALRTPVQM-GENWL--GPEEMFKALSAGACDLVM 265
Query: 158 LKVNQIGSVTESIEAVKMSKRAGWGVMASH 187
+ +IG VT + A ++++AG M+SH
Sbjct: 266 PDLMKIGGVTGWLRASALAEQAGIP-MSSH 294
>gnl|CDD|239433 cd03317, NAAAR, N-acylamino acid racemase (NAAAR), an octameric
enzyme that catalyzes the racemization of N-acylamino
acids. NAAARs act on a broad range of N-acylamino acids
rather than amino acids. Enantiopure amino acids are of
industrial interest as chiral building blocks for
antibiotics, herbicides, and drugs. NAAAR is a member of
the enolase superfamily, characterized by the presence
of an enolate anion intermediate which is generated by
abstraction of the alpha-proton of the carboxylate
substrate by an active site residue and is stabilized by
coordination to the essential Mg2+ ion.
Length = 354
Score = 40.3 bits (95), Expect = 6e-04
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 106 IEDPFDQDDWEHHAELTGKIGRHVQ-IVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIG 164
IE P DD HAEL + ++ + D + + + KAI+ C + +K ++G
Sbjct: 208 IEQPLAADDLIDHAELQ----KLLKTPICLDESIQSAEDARKAIELGACKIINIKPGRVG 263
Query: 165 SVTESIEAVKMSKRAGWGV 183
+TE+++ + + G V
Sbjct: 264 GLTEALKIHDLCQEHGIPV 282
>gnl|CDD|239431 cd03315, MLE_like, Muconate lactonizing enzyme (MLE) like subgroup
of the enolase superfamily. Enzymes of this subgroup
share three conserved carboxylate ligands for the
essential divalent metal ion (usually Mg2+), two
aspartates and a glutamate, and residues that can
function as general acid/base catalysts, a Lys-X-Lys
motif and another conserved lysine. Despite these
conserved residues, the members of the MLE subgroup,
like muconate lactonizing enzyme, o-succinylbenzoate
synthase (OSBS) and N-acylamino acid racemase (NAAAR),
catalyze different reactions.
Length = 265
Score = 39.2 bits (92), Expect = 0.001
Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Query: 106 IEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGS 165
+E P DD E A L I+ D+ T P + + +A+ +K + G
Sbjct: 160 VEQPLPADDLEGRAALARATD--TPIMADESAFT-PHDAFRELALGAADAVNIKTAKTGG 216
Query: 166 VTESIEAVKMSKRAGWGVMAS 186
+T++ + +++ G VM
Sbjct: 217 LTKAQRVLAVAEALGLPVMVG 237
>gnl|CDD|227284 COG4948, COG4948, L-alanine-DL-glutamate epimerase and related
enzymes of enolase superfamily [Cell envelope
biogenesis, outer membrane / General function prediction
only].
Length = 372
Score = 34.7 bits (80), Expect = 0.035
Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 6/86 (6%)
Query: 106 IEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGS 165
IE+P DD E EL I + V + ++ + + + ++G
Sbjct: 219 IEEPLPPDDLEGLRELRAAT--STPIAAGES-VYTRWDFRRLLEAGAVDIVQPDLARVGG 275
Query: 166 VTESIEAVKMSKRAGWGVM-ASHRSG 190
+TE+++ + G+GVM H G
Sbjct: 276 ITEALKIAAL--AEGFGVMVGPHVEG 299
>gnl|CDD|213667 TIGR01928, menC_lowGC/arch, o-succinylbenzoate synthase. This
model describes the enzyme o-succinylbenzoic acid
synthetase (menC) that is involved in one of the steps
of the menaquinone biosynthesis pathway. It takes SHCHC
and makes it into 2-succinylbenzoate. Included in this
model are low GC gram positive bacteria and archaea.
Also included in the seed and in the model are enzymes
with the com-name of N-acylamino acid racemase (or the
more general term, racemase / racemase family), which
refers to the enzyme's industrial application as
racemases, and not to its biological function as
o-succinylbenzoic acid synthetase [Biosynthesis of
cofactors, prosthetic groups, and carriers, Menaquinone
and ubiquinone].
Length = 324
Score = 33.7 bits (77), Expect = 0.075
Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
Query: 106 IEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGS 165
IE+PF DD EL + + D +T+ I+ + +K ++G
Sbjct: 203 IEEPFKIDDISMLDELAKGTITPICL---DESITSLDDARNLIELGNVKVINIKPGRLGG 259
Query: 166 VTESIEAVKMSKRAGWGV 183
+TE +A+ K G V
Sbjct: 260 LTEVQKAIDTCKEHGAKV 277
>gnl|CDD|185490 PTZ00163, PTZ00163, hypothetical protein; Provisional.
Length = 230
Score = 32.8 bits (74), Expect = 0.10
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 75 KEENNDGSQKVSGDG-LKNVYRSFISDHPIVSIEDPFD---QDDWEHHAELTGKIGRH 128
+EEN + KV D ++N + I D SI+DP D D WEHH L +I +
Sbjct: 79 EEENQKDNTKVDNDNNMENEMENHIDD----SIDDPMDDLMNDKWEHHNSLEDRIKEY 132
>gnl|CDD|148650 pfam07163, Pex26, Pex26 protein. This family consists of Pex26 and
related mammalian proteins. Pex26 is a type II
peroxisomal membrane protein which recruits Pex6-Pex1
complexes to peroxisomes. Mutations in Pex26 can lead to
human disorders.
Length = 309
Score = 32.3 bits (73), Expect = 0.19
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 159 KVNQIGSVTESIEAVKMSKRAGWGVMASH-RSGETEDTFIADLSVGLATGQIKTGAPCRS 217
KV++ GS++ + ++ M R W SH RS +A L + L + P
Sbjct: 222 KVSKEGSLSLKLLSLIMLLRRLWSSAVSHIRSIPFRKVLLAALILCLLIARFDPALPSSL 281
Query: 218 ERLAKYNQLLR 228
L + +QL +
Sbjct: 282 PFLYRLHQLFQ 292
>gnl|CDD|216823 pfam01977, UbiD, 3-octaprenyl-4-hydroxybenzoate carboxy-lyase.
This family has been characterized as 3-octaprenyl-4-
hydroxybenzoate carboxy-lyase enzymes. This enzyme
catalyzes the third reaction in ubiquinone biosynthesis.
For optimal activity the carboxy-lase was shown to
require Mn2+.
Length = 405
Score = 32.1 bits (74), Expect = 0.26
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 10/55 (18%)
Query: 101 HPIVSIEDPFDQDD-------WEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAI 148
H +VSI+ + + L+ K HV +V +D+ + +P+ VE AI
Sbjct: 334 HAVVSIKKRYPGHAKNVMLAAFGAGPSLSTK---HVIVVDEDIDIFDPEDVEWAI 385
>gnl|CDD|239430 cd03314, MAL, Methylaspartate ammonia lyase (3-methylaspartase,
MAL) is a homodimeric enzyme, catalyzing the
magnesium-dependent reversible alpha,beta-elimination of
ammonia from L-threo-(2S,3S)-3-methylaspartic acid to
mesaconic acid. This reaction is part of the main
catabolic pathway for glutamate. MAL belongs to the
enolase superfamily of enzymes, characterized by the
presence of an enolate anion intermediate which is
generated by abstraction of the alpha-proton of the
carboxylate substrate by an active site residue and is
stabilized by coordination to the essential Mg2+ ion.
Length = 369
Score = 31.2 bits (71), Expect = 0.43
Identities = 26/111 (23%), Positives = 42/111 (37%), Gaps = 8/111 (7%)
Query: 104 VSIEDPFDQDDWEHHAELTGKI-------GRHVQIVGDDLLVTNPKRVEKAIKEKTCNAL 156
+ IE P D E E + G V+IV D+ T + + + +
Sbjct: 230 LRIEGPMDAGSREAQIERMAALRAELDRRGVGVRIVADEWCNT-LEDIRDFADAGAAHMV 288
Query: 157 LLKVNQIGSVTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLATG 207
+K +G + +I+AV K G G ET+ + + V LAT
Sbjct: 289 QIKTPDLGGIDNTIDAVLYCKEHGVGAYLGGSCNETDISARVTVHVALATR 339
>gnl|CDD|201648 pfam01188, MR_MLE, Mandelate racemase / muconate lactonizing
enzyme, C-terminal domain. C-terminal domain is TIM
barrel fold, dehydratase-like domain. Manganese is
associated with this domain.
Length = 69
Score = 27.4 bits (62), Expect = 1.6
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 100 DHPIVSIEDPFDQDDWEHHAELT 122
+ ++ IE+P DD E AEL
Sbjct: 37 PYGLLWIEEPLPPDDLEGLAELR 59
>gnl|CDD|222086 pfam13378, MR_MLE_C, Enolase C-terminal domain-like. This domain
appears at the C-terminus of many of the proteins that
carry the MR_MLE, pfam01188 and MR_MLE_N pfam02746
domains. EC:4.2.1.40.
Length = 111
Score = 27.9 bits (63), Expect = 2.2
Identities = 6/47 (12%), Positives = 22/47 (46%)
Query: 138 VTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAGWGVM 184
+ + + ++ + + V ++G +TE+++ +++ G V
Sbjct: 4 LYSLADFRRLLEAGAVDIIQPDVTRVGGITEALKIAALAEAFGVPVA 50
>gnl|CDD|239435 cd03319, L-Ala-DL-Glu_epimerase, L-Ala-D/L-Glu epimerase catalyzes
the epimerization of L-Ala-D/L-Glu and other dipeptides.
The genomic context and the substrate specificity of
characterized members of this family from E.coli and
B.subtilis indicates a possible role in the metabolism
of the murein peptide of peptidoglycan, of which
L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a
member of the enolase-superfamily, which is
characterized by the presence of an enolate anion
intermediate which is generated by abstraction of the
alpha-proton of the carboxylate substrate by an active
site residue and is stabilized by coordination to the
essential Mg2+ ion.
Length = 316
Score = 28.3 bits (64), Expect = 4.0
Identities = 17/85 (20%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Query: 100 DHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 159
+ + IE P D + A L K + I+ D+ + + + + +K
Sbjct: 202 ELGVELIEQPVPAGDDDGLAYLRDKS--PLPIMADES-CFSAADAARLAGGGAYDGINIK 258
Query: 160 VNQIGSVTESIEAVKMSKRAGWGVM 184
+ + G +TE++ +++ AG VM
Sbjct: 259 LMKTGGLTEALRIADLARAAGLKVM 283
>gnl|CDD|162905 TIGR02534, mucon_cyclo, muconate and chloromuconate
cycloisomerases. This model encompasses muconate
cycloisomerase (EC 5.5.1.1) and chloromuconate
cycloisomerase (EC 5.5.1.7), enzymes that often overlap
in specificity. It excludes more distantly related
proteins such as mandelate racemase (5.1.2.2).
Length = 368
Score = 27.8 bits (62), Expect = 5.0
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 106 IEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGS 165
IE P ++ E A LT + +V I+ D+ VT P K + LK + G
Sbjct: 218 IEQPTPAENREALARLTRRF--NVPIMADES-VTGPADALAIAKASAADVFALKTTKSGG 274
Query: 166 VTESIEAVKMSKRAG 180
+ ES + +++ AG
Sbjct: 275 LLESKKIAAIAEAAG 289
>gnl|CDD|214914 smart00922, MR_MLE, Mandelate racemase / muconate lactonizing
enzyme, C-terminal domain. Mandelate racemase (MR) and
muconate lactonizing enzyme (MLE) are two bacterial
enzymes involved in aromatic acid catabolism. They
catalyze mechanistically distinct reactions yet they are
related at the level of their primary, quaternary
(homooctamer) and tertiary structures.. This entry
represents the C-terminal region of these proteins.
Length = 97
Score = 26.5 bits (59), Expect = 5.4
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 100 DHPIVSIEDPFDQDDWEHHAELTGKI 125
+ + IE+P DD E AEL
Sbjct: 70 ELGLEWIEEPVPPDDLEGLAELRRAT 95
>gnl|CDD|233001 TIGR00509, bisC_fam, molybdopterin guanine dinucleotide-containing
S/N-oxide reductases. This enzyme family shares
sequence similarity and a requirement for a molydenum
cofactor as the only prosthetic group. The form of the
cofactor is a single molybdenum atom coordinated by two
molybdopterin guanine dinucleotide molecules. Members of
the family include biotin sulfoxide reductase,
dimethylsulfoxide reductase, and trimethylamine-N-oxide
reductase, although a single member may show all those
activities and related activities; it may not be
possible to resolve the primary function for members of
this family by sequence comparison alone. A number of
similar molybdoproteins in which the N-terminal region
contains a CXXXC motif and may bind an iron-sulfur
cluster are excluded from this set, including formate
dehydrogenases and nitrate reductases. Also excluded is
the A chain of a heteromeric, anaerobic DMSO reductase,
which also contains the CXXXC motif.
Length = 770
Score = 27.8 bits (62), Expect = 6.0
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 223 YNQLLRIEEELGPAAIYAGT 242
+L R+ + GP+AI+AG+
Sbjct: 84 AEELKRVRKTHGPSAIFAGS 103
>gnl|CDD|169397 PRK08350, PRK08350, hypothetical protein; Provisional.
Length = 341
Score = 27.5 bits (61), Expect = 6.8
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 154 NALLLKVNQIGSVTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGA 213
NAL +K +G++T+ V K + + E+ D + L+VGL +
Sbjct: 255 NALSIKPINLGTLTDLYNLVNDVKSERITPILAEAKYESADEALPHLAVGLRCPAMLI-- 312
Query: 214 PCRSERLAKYNQLLRIEEELG 234
+ + K N+L RI E+LG
Sbjct: 313 --HKDSVEKINELNRIAEDLG 331
>gnl|CDD|237921 PRK15199, fimH, fimbrial-like adhesin; Provisional.
Length = 335
Score = 27.6 bits (61), Expect = 6.9
Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 21/70 (30%)
Query: 57 VAASEFYDSKDKTYDLNFKEENNDGSQKVS----------------GDGLKNVYRSFISD 100
VA E YD + F NN Q V+ G + YRS++++
Sbjct: 31 VAEDEHYDLSNV-----FNSTNNQPGQIVTLPEKSGWVGVNAICPPGTLVNYTYRSYVTN 85
Query: 101 HPIVSIEDPF 110
P+ D +
Sbjct: 86 FPVQETIDNY 95
>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 235
Score = 27.0 bits (60), Expect = 7.9
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 92 NVYRSFISDHPIVSIEDP 109
N+ R FI D+PI+ +++P
Sbjct: 162 NIARGFIVDYPILLLDEP 179
>gnl|CDD|214792 smart00729, Elp3, Elongator protein 3, MiaB family, Radical SAM.
This superfamily contains MoaA, NifB, PqqE,
coproporphyrinogen III oxidase, biotin synthase and MiaB
families, and includes a representative in the
eukaryotic elongator subunit, Elp-3. Some members of the
family are methyltransferases.
Length = 216
Score = 27.0 bits (60), Expect = 9.6
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 156 LLLKVNQIGSVTESIEAVKMSKRAGWGVMASH----RSGETEDTFIADL 200
+L +N+ +V + +EAV++ + AG +++ GETE+ F L
Sbjct: 125 VLKAINRGHTVEDVLEAVELLREAGPIKVSTDLIVGLPGETEEDFEETL 173
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.134 0.383
Gapped
Lambda K H
0.267 0.0744 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,750,686
Number of extensions: 1209015
Number of successful extensions: 795
Number of sequences better than 10.0: 1
Number of HSP's gapped: 779
Number of HSP's successfully gapped: 35
Length of query: 251
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 156
Effective length of database: 6,723,972
Effective search space: 1048939632
Effective search space used: 1048939632
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.1 bits)