RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 040341
(251 letters)
>3otr_A Enolase; structural genomics, center for structural genomics of
infec diseases, csgid, alpha-beta barrel, TIM barrel;
2.75A {Toxoplasma gondii}
Length = 452
Score = 457 bits (1178), Expect = e-162
Identities = 145/249 (58%), Positives = 183/249 (73%)
Query: 3 LQAVIKKKYGQDATNVGDEGGFAPNIQESYEGFELLKTAIAKGGYIGKIVIGMDVAASEF 62
L+ VIK KYG DATNVGDEGGFAPN+ + E LL AI GY GKI I D AASEF
Sbjct: 199 LKNVIKNKYGLDATNVGDEGGFAPNVATAEEALNLLVEAIKAAGYEGKIKIAFDAAASEF 258
Query: 63 YDSKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHHAELT 122
Y +K YDL++K + + S+ ++G+ LK VY ++ +PI+S+EDPFDQDD+ + T
Sbjct: 259 YKQDEKKYDLDYKCKTKNASKHLTGEKLKEVYEGWLKKYPIISVEDPFDQDDFASFSAFT 318
Query: 123 GKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAGWG 182
+G Q++GDD+LVTN R+EKA+K+K CN LLLKVNQIGSVTE+IEA +++++GWG
Sbjct: 319 KDVGEKTQVIGDDILVTNILRIEKALKDKACNCLLLKVNQIGSVTEAIEACLLAQKSGWG 378
Query: 183 VMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGPAAIYAGT 242
V SHRSGETED+FIADL VGL GQIK+G+PCRSERL KYNQL+RIEE LG +YAG
Sbjct: 379 VQVSHRSGETEDSFIADLVVGLRCGQIKSGSPCRSERLCKYNQLMRIEESLGADCVYAGE 438
Query: 243 KFRAPVEPY 251
FR P +
Sbjct: 439 SFRHPKRSH 447
>2al1_A Enolase 1, 2-phospho-D-; beta barrel, lyase; HET: PEP 2PG; 1.50A
{Saccharomyces cerevisiae} SCOP: c.1.11.1 d.54.1.1 PDB:
1ebg_A 1ebh_A* 1one_A* 2one_A* 1p48_A* 1p43_A* 1l8p_A
4enl_A 1nel_A 1els_A 3enl_A 5enl_A* 6enl_A 7enl_A*
2al2_A* 2al2_B* 2xh7_A* 2xgz_A* 2xh2_A* 2xh4_A* ...
Length = 436
Score = 448 bits (1156), Expect = e-159
Identities = 145/247 (58%), Positives = 181/247 (73%), Gaps = 4/247 (1%)
Query: 3 LQAVIKKKYGQDATNVGDEGGFAPNIQESYEGFELLKTAIAKGGYIGKIVIGMDVAASEF 62
L+++ KK+YG A NVGDEGG APNIQ + E +L+ AI G+ GK+ IG+D A+SEF
Sbjct: 193 LKSLTKKRYGASAGNVGDEGGVAPNIQTAEEALDLIVDAIKAAGHDGKVKIGLDCASSEF 252
Query: 63 YDSKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHHAELT 122
+ KD YDL+FK N+D S+ ++G L ++Y S + +PIVSIEDPF +DDWE +
Sbjct: 253 F--KDGKYDLDFKNPNSDKSKWLTGPQLADLYHSLMKRYPIVSIEDPFAEDDWEAWSHFF 310
Query: 123 GKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAGWG 182
G +QIV DDL VTNPKR+ AI++K +ALLLKVNQIG+++ESI+A + S AGWG
Sbjct: 311 KTAG--IQIVADDLTVTNPKRIATAIEKKAADALLLKVNQIGTLSESIKAAQDSFAAGWG 368
Query: 183 VMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGPAAIYAGT 242
VM SHRSGETEDTFIADL VGL TGQIKTGAP RSERLAK NQLLRIEEELG A++AG
Sbjct: 369 VMVSHRSGETEDTFIADLVVGLRTGQIKTGAPARSERLAKLNQLLRIEEELGDNAVFAGE 428
Query: 243 KFRAPVE 249
F +
Sbjct: 429 NFHHGDK 435
>2akz_A Gamma enolase, neural; fluoride inhibition, negative cooperativity,
glycolysis, , isothermal titration calorimetry, lyase;
1.36A {Homo sapiens} SCOP: c.1.11.1 d.54.1.1 PDB: 2akm_A
1te6_A 2psn_A 3b97_A 2xsx_A 1pdz_A 1pdy_A
Length = 439
Score = 444 bits (1144), Expect = e-158
Identities = 167/249 (67%), Positives = 197/249 (79%), Gaps = 5/249 (2%)
Query: 3 LQAVIKKKYGQDATNVGDEGGFAPNIQESYEGFELLKTAIAKGGYIGKIVIGMDVAASEF 62
L+ VIK KYG+DATNVGDEGGFAPNI E+ E EL+K AI K GY KIVIGMDVAASEF
Sbjct: 191 LKGVIKDKYGKDATNVGDEGGFAPNILENSEALELVKEAIDKAGYTEKIVIGMDVAASEF 250
Query: 63 YDSKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHHAELT 122
Y +D YDL+FK D S+ ++GD L +Y+ F+ D+P+VSIEDPFDQDDW ++ T
Sbjct: 251 Y--RDGKYDLDFKSPT-DPSRYITGDQLGALYQDFVRDYPVVSIEDPFDQDDWAAWSKFT 307
Query: 123 GKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAGWG 182
+G +QIVGDDL VTNPKR+E+A++EK CN LLLKVNQIGSVTE+I+A K+++ GWG
Sbjct: 308 ANVG--IQIVGDDLTVTNPKRIERAVEEKACNCLLLKVNQIGSVTEAIQACKLAQENGWG 365
Query: 183 VMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGPAAIYAGT 242
VM SHRSGETEDTFIADL VGL TGQIKTGAPCRSERLAKYNQL+RIEEELG A +AG
Sbjct: 366 VMVSHRSGETEDTFIADLVVGLCTGQIKTGAPCRSERLAKYNQLMRIEEELGDEARFAGH 425
Query: 243 KFRAPVEPY 251
FR P +
Sbjct: 426 NFRNPSVLH 434
>3qtp_A Enolase 1; glycolysis, lyase; HET: 2PG; 1.90A {Entamoeba
histolytica}
Length = 441
Score = 439 bits (1131), Expect = e-155
Identities = 148/247 (59%), Positives = 175/247 (70%), Gaps = 4/247 (1%)
Query: 3 LQAVIKKKYGQDATNVGDEGGFAPNIQESYEGFELLKTAIAKGGYIGKIVIGMDVAASEF 62
L+ VIK KYGQDATNVGDEGGFAPN+ + E +LL AIAK GY GKI I MD AASEF
Sbjct: 195 LKVVIKAKYGQDATNVGDEGGFAPNVSGAREALDLLVEAIAKAGYTGKIEIAMDCAASEF 254
Query: 63 YDSKDKTYDLNFK--EENNDGSQKVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHHAE 120
Y+ + K YDL K + D S DGL Y + +PI SIEDPF +DDW +
Sbjct: 255 YNEETKKYDLGKKIPADKKDPSLVKDVDGLIAEYVDYGKHYPIASIEDPFAEDDWAAWNK 314
Query: 121 LTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAG 180
T + G QIVGDDLLVTNP RV+ A+ + CN++L+KVNQIG++TE+ + +KM++ G
Sbjct: 315 FTVEHGN-FQIVGDDLLVTNPARVQMAMDKNACNSVLIKVNQIGTLTETFKTIKMAQEKG 373
Query: 181 WGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGPAAIYA 240
WGVMASHRSGETEDTFIADL VGL QIKTGAPCRSERL KYNQL+RIEEELG YA
Sbjct: 374 WGVMASHRSGETEDTFIADLVVGLNCKQIKTGAPCRSERLCKYNQLMRIEEELGNIP-YA 432
Query: 241 GTKFRAP 247
G +R
Sbjct: 433 GKNWRNS 439
>2ptz_A Enolase; lyase, glycolysis,His-TAG; 1.65A {Trypanosoma brucei}
SCOP: c.1.11.1 d.54.1.1 PDB: 2ptx_A 2pty_A* 2ptw_A
2pu0_A 2pu1_A* 1oep_A
Length = 432
Score = 436 bits (1124), Expect = e-155
Identities = 133/242 (54%), Positives = 169/242 (69%), Gaps = 3/242 (1%)
Query: 3 LQAVIKKKYGQDATNVGDEGGFAPNIQESYEGFELLKTAIAKGGYIGKIVIGMDVAASEF 62
L+ +IKKKYGQDA NVGDEGGFAP I++ E +L AI + G+ GK I MD AASE
Sbjct: 193 LRGIIKKKYGQDAVNVGDEGGFAPPIKDINEPLPILMEAIEEAGHRGKFAICMDCAASET 252
Query: 63 YDSKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHHAELT 122
YD K + Y+L FK + V+ + L+ Y + D+PIVSIEDP+DQDD+ A +T
Sbjct: 253 YDEKKQQYNLTFK---SPEPTWVTAEQLRETYCKWAHDYPIVSIEDPYDQDDFAGFAGIT 309
Query: 123 GKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAGWG 182
+ QIVGDDL VTN +R++ AI++K CN+LLLK+NQIG+++E+I + K+ GW
Sbjct: 310 EALKGKTQIVGDDLTVTNTERIKMAIEKKACNSLLLKINQIGTISEAIASSKLCMENGWS 369
Query: 183 VMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGPAAIYAGT 242
VM SHRSGETEDT+IADL V L +GQIKTGAPCR ER AK NQLLRIEEELG A +
Sbjct: 370 VMVSHRSGETEDTYIADLVVALGSGQIKTGAPCRGERTAKLNQLLRIEEELGAHAKFGFP 429
Query: 243 KF 244
+
Sbjct: 430 GW 431
>2pa6_A Enolase; glycolysis, lyase, magnesium, metal-binding, structural
GENO NPPSFA; 1.85A {Methanocaldococcus jannaschii}
Length = 427
Score = 401 bits (1033), Expect = e-141
Identities = 129/245 (52%), Positives = 176/245 (71%), Gaps = 13/245 (5%)
Query: 3 LQAVIKKKYGQDATNVGDEGGFAPNIQESYEGFELLKTAIAKGGYIGKIVIGMDVAASEF 62
L+ VI +KYG++A NVGDEGGFAP ++ S E +LL ++ K GY ++V +D AASEF
Sbjct: 195 LKNVILEKYGKNAVNVGDEGGFAPPLKTSREALDLLTESVKKAGYEDEVVFALDAAASEF 254
Query: 63 YDSKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHHAELT 122
Y KD Y + K K++ + L + Y++ + ++PIVSIEDPF ++D+E A +T
Sbjct: 255 Y--KDGYYYVEGK--------KLTREELLDYYKALVDEYPIVSIEDPFHEEDFEGFAMIT 304
Query: 123 GKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAGWG 182
++ +QIVGDDL VTN +R+ K I+ K NALLLKVNQIG+++E+++A +++ R G+G
Sbjct: 305 KELD--IQIVGDDLFVTNVERLRKGIEMKAANALLLKVNQIGTLSEAVDAAQLAFRNGYG 362
Query: 183 VMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGPAAIYAGT 242
V+ SHRSGETEDT IADLSV L +GQIKTGAP R ER AKYNQL+RIE+ELG + YAG
Sbjct: 363 VVVSHRSGETEDTTIADLSVALNSGQIKTGAPARGERTAKYNQLIRIEQELG-LSKYAGR 421
Query: 243 KFRAP 247
FR P
Sbjct: 422 NFRCP 426
>3uj2_A Enolase 1; enzyme function initiative, EFI, lyase; 2.00A
{Anaerostipes caccae}
Length = 449
Score = 346 bits (889), Expect = e-119
Identities = 119/243 (48%), Positives = 164/243 (67%), Gaps = 10/243 (4%)
Query: 3 LQAVIKKKYGQDATNVGDEGGFAPNIQESYEGFELLKTAIAKGGYI-GK-IVIGMDVAAS 60
L ++K K AT+VGDEGGFAP++ E E + A+ GY G+ V+ MD A+S
Sbjct: 213 LAGLLKSK--GLATSVGDEGGFAPDLASDEEAIEYILEAVKLAGYEPGRDFVLAMDAASS 270
Query: 61 EFYDSKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHHAE 120
E+ K Y + +K + + L ++S +PIVSIED D++DWE
Sbjct: 271 EWKGEKKGEY--ILPKCK----RKFASEELVAHWKSLCERYPIVSIEDGLDEEDWEGWQY 324
Query: 121 LTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAG 180
+T ++G +Q+VGDDL VTN +R+ K IKE+ N++L+K+NQIG+V+E++EA+KM+ +AG
Sbjct: 325 MTRELGDKIQLVGDDLFVTNTERLNKGIKERCGNSILIKLNQIGTVSETLEAIKMAHKAG 384
Query: 181 WGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGPAAIYA 240
+ + SHRSGETEDT IADL+V L TGQIKTGAP RSER+AKYNQLLRIEEELG +A+Y
Sbjct: 385 YTAVVSHRSGETEDTTIADLAVALNTGQIKTGAPSRSERVAKYNQLLRIEEELGDSAVYP 444
Query: 241 GTK 243
G
Sbjct: 445 GFT 447
>1w6t_A Enolase; bacterial infection, surface protein, moonlighting
protein, glycolysis, phosphopyruvate hydratase, lyase;
HET: 2PE; 2.10A {Streptococcus pneumoniae} SCOP:
c.1.11.1 d.54.1.1 PDB: 1iyx_A
Length = 444
Score = 344 bits (885), Expect = e-118
Identities = 103/243 (42%), Positives = 158/243 (65%), Gaps = 6/243 (2%)
Query: 3 LQAVIKKKYGQDATNVGDEGGFAPNIQESYEGFELLKTAIAKGGYI-GK-IVIGMDVAAS 60
L+ ++K + T VGDEGGFAP + + +G E + AI GY+ GK + +G D A+S
Sbjct: 199 LKKILKSR--GLETAVGDEGGFAPRFEGTEDGVETILAAIEAAGYVPGKDVFLGFDCASS 256
Query: 61 EFYDSKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHHAE 120
EFY + ++ + +G+ + + ++ +PI++IED D++DW+
Sbjct: 257 EFY--DKERKVYDYTKFEGEGAAVRTSAEQIDYLEELVNKYPIITIEDGMDENDWDGWKA 314
Query: 121 LTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAG 180
LT ++G+ VQ+VGDD VTN + + I+E N++L+KVNQIG++TE+ EA++M+K AG
Sbjct: 315 LTERLGKKVQLVGDDFFVTNTDYLARGIQEGAANSILIKVNQIGTLTETFEAIEMAKEAG 374
Query: 181 WGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGPAAIYA 240
+ + SHRSGETED+ IAD++V GQIKTG+ R++R+AKYNQLLRIE++LG A Y
Sbjct: 375 YTAVVSHRSGETEDSTIADIAVATNAGQIKTGSLSRTDRIAKYNQLLRIEDQLGEVAEYR 434
Query: 241 GTK 243
G K
Sbjct: 435 GLK 437
>2fym_A Enolase; RNA degradosome, enolase, lyase; 1.60A {Escherichia coli}
SCOP: c.1.11.1 d.54.1.1 PDB: 1e9i_A 3h8a_A
Length = 431
Score = 341 bits (877), Expect = e-117
Identities = 116/247 (46%), Positives = 157/247 (63%), Gaps = 12/247 (4%)
Query: 3 LQAVIKKKYGQDATNVGDEGGFAPNIQESYEGFELLKTAIAKGGYI-GK-IVIGMDVAAS 60
L V+K K G T VGDEGG+APN+ + E ++ A+ GY GK I + MD AAS
Sbjct: 192 LAKVLKAK-GM-NTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAAS 249
Query: 61 EFYDSKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHHAE 120
EFY KD Y L +G++ + + + +PIVSIED D+ DW+ A
Sbjct: 250 EFY--KDGKYVLA-----GEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAY 302
Query: 121 LTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAG 180
T +G +Q+VGDDL VTN K +++ I++ N++L+K NQIGS+TE++ A+KM+K AG
Sbjct: 303 QTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAG 362
Query: 181 WGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGPAAIYA 240
+ + SHRSGETED IADL+VG A GQIKTG+ RS+R+AKYNQL+RIEE LG A Y
Sbjct: 363 YTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYN 422
Query: 241 GTK-FRA 246
G K +
Sbjct: 423 GRKEIKG 429
>3tqp_A Enolase; energy metabolism, lyase; 2.20A {Coxiella burnetii}
Length = 428
Score = 337 bits (867), Expect = e-116
Identities = 103/243 (42%), Positives = 153/243 (62%), Gaps = 14/243 (5%)
Query: 3 LQAVIKKKYGQDATNVGDEGGFAPNIQESYEGFELLKTAIAKGGYI-GK-IVIGMDVAAS 60
L+ + + G + VGDEGGFAP++ + FEL+ AI Y+ GK I + +D A+S
Sbjct: 191 LKKRLVSR-GL-MSAVGDEGGFAPDLPNNEAAFELILEAIEDANYVPGKDIYLALDAASS 248
Query: 61 EFYDSKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHHAE 120
E Y ++ YD + +Q + + + + + +P++SIED ++DW
Sbjct: 249 ELY--QNGRYDF-------ENNQL-TSEEMIDRLTEWTKKYPVISIEDGLSENDWAGWKL 298
Query: 121 LTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAG 180
LT ++ VQ+VGDD+ VTNP +EK IK+ NA+L+K+NQIG++TE++ V ++K
Sbjct: 299 LTERLENKVQLVGDDIFVTNPDILEKGIKKNIANAILVKLNQIGTLTETLATVGLAKSNK 358
Query: 181 WGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGPAAIYA 240
+GV+ SHRSGETEDT IADL+V QIKTG+ CRS+R+AKYN+LL+IE EL A YA
Sbjct: 359 YGVIISHRSGETEDTTIADLAVATDARQIKTGSLCRSDRVAKYNRLLQIERELNDQAPYA 418
Query: 241 GTK 243
G +
Sbjct: 419 GKE 421
>3qn3_A Enolase; structural genomics, center for structural genomics of
infec diseases, csgid, glycolysis, lyase; 2.13A
{Campylobacter jejuni}
Length = 417
Score = 330 bits (848), Expect = e-113
Identities = 103/242 (42%), Positives = 148/242 (61%), Gaps = 15/242 (6%)
Query: 3 LQAVIKKKYGQDATNVGDEGGFAPNIQESYEGFELLKTAIAKGGYIGKIVIGMDVAASEF 62
L+ + +T +GDEGGFAPN+ + E +LL T I K GY ++ I +DVA++EF
Sbjct: 191 LKKELANS--GHSTALGDEGGFAPNLANNTEPIDLLMTCIKKAGYENRVKIALDVASTEF 248
Query: 63 YDSKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHHAELT 122
+ KD Y + +G + S + L Y + +PI SIED ++D+E +LT
Sbjct: 249 F--KDGKYHM-------EG-KAFSSEALIERYVELCAKYPICSIEDGLAENDFEGWIKLT 298
Query: 123 GKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAGWG 182
K+G +Q+VGDDL VTN + + I +K NA+L+K NQIG++T+++ V++++R +
Sbjct: 299 EKLGNKIQLVGDDLFVTNEDILREGIIKKMANAVLIKPNQIGTITQTMRTVRLAQRNNYK 358
Query: 183 VMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGPAAIYAGT 242
+ SHRSGE+ED FIAD +V L TGQIKTGA R ER AKYN+LL IE E Y G
Sbjct: 359 CVMSHRSGESEDAFIADFAVALNTGQIKTGALARGERTAKYNRLLEIEFESDE---YLGE 415
Query: 243 KF 244
K
Sbjct: 416 KL 417
>1kcz_A Beta-methylaspartase; beta zigzag, alpha/beta-barrel, lyase; 1.90A
{Clostridium tetanomorphum} SCOP: c.1.11.2 d.54.1.1 PDB:
1kd0_A* 3zvi_A 3zvh_A
Length = 413
Score = 68.5 bits (167), Expect = 1e-13
Identities = 29/142 (20%), Positives = 54/142 (38%), Gaps = 12/142 (8%)
Query: 104 VSIEDPFDQDD----WEHHAELTGKIGRH---VQIVGDDLLVTNPKRVEKAIKEKTCNAL 156
+ IE P D +D E +L ++ ++V D+ T + V+ K + +
Sbjct: 270 LRIEGPMDVEDRQKQMEAMRDLRAELDGRGVDAELVADEWCNT-VEDVKFFTDNKAGHMV 328
Query: 157 LLKVNQIGSVTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLATGQ----IKTG 212
+K +G V +A+ K G G ET + ++G+A G K G
Sbjct: 329 QIKTPDLGGVNNIADAIMYCKANGMGAYCGGTCNETNRSAEVTTNIGMACGARQVLAKPG 388
Query: 213 APCRSERLAKYNQLLRIEEELG 234
+ N++ R+ +G
Sbjct: 389 MGVDEGMMIVKNEMNRVLALVG 410
>1kko_A 3-methylaspartate ammonia-lyase; enolase superfamily, TIM barrel;
1.33A {Citrobacter amalonaticus} SCOP: c.1.11.2 d.54.1.1
PDB: 1kkr_A*
Length = 413
Score = 67.4 bits (164), Expect = 4e-13
Identities = 28/141 (19%), Positives = 52/141 (36%), Gaps = 12/141 (8%)
Query: 104 VSIEDPFD----QDDWEHHAELTGKI---GRHVQIVGDDLLVTNPKRVEKAIKEKTCNAL 156
+ IE P D D +T ++ G V+IV D+ + + +C+ +
Sbjct: 270 LYIEGPVDAGNKPDQIRMLTAITKELTRLGSGVKIVADEW-CNTYQDIVDFTDAGSCHMV 328
Query: 157 LLKVNQIGSVTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLATG--QI--KTG 212
+K +G + ++AV + G ETE + + V LA ++ K G
Sbjct: 329 QIKTPDLGGIHNIVDAVLYCNKHGMEAYQGGTCNETEISARTCVHVALAARPMRMLIKPG 388
Query: 213 APCRSERLAKYNQLLRIEEEL 233
+N++ R L
Sbjct: 389 MGFDEGLNIVFNEMNRTIALL 409
>3qld_A Mandelate racemase/muconate lactonizing protein; structural
genomics, PSI-2, isomerase; HET: MSE; 1.85A
{Alicyclobacillus acidocaldarius LAA1}
Length = 388
Score = 48.1 bits (115), Expect = 8e-07
Identities = 15/85 (17%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Query: 100 DHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 159
+ + IE P +DDW A+L + + D+ + + + ++ + L +K
Sbjct: 214 AYDLQFIEQPLPEDDWFDLAKLQASLR--TPVCLDESVRS-VRELKLTARLGAARVLNVK 270
Query: 160 VNQIGSVTESIEAVKMSKRAGWGVM 184
++G ++ A+ ++ AG
Sbjct: 271 PGRLGGFGATLRALDVAGEAGMAAW 295
>2okt_A OSB synthetase, O-succinylbenzoic acid synthetase; enolase,
structural genom protein structure initiative, PSI,
nysgrc; 1.30A {Staphylococcus aureus subsp} PDB: 2ola_A
3h70_A
Length = 342
Score = 47.4 bits (113), Expect = 2e-06
Identities = 15/85 (17%), Positives = 32/85 (37%), Gaps = 5/85 (5%)
Query: 100 DHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 159
++ IE+PF E+ + + D T+ + I+ ++LK
Sbjct: 190 REQVLYIEEPFKDISM--LDEVADGTIPPIAL---DEKATSLLDIINLIELYNVKVVVLK 244
Query: 160 VNQIGSVTESIEAVKMSKRAGWGVM 184
++G + + A+ K G V+
Sbjct: 245 PFRLGGIDKVQTAIDTLKSHGAKVV 269
>1sjd_A N-acylamino acid racemase; lyase, isomerase; HET: NPG; 1.87A
{Amycolatopsis SP} SCOP: c.1.11.2 d.54.1.1 PDB: 1sja_A*
1sjb_A* 1sjc_A*
Length = 368
Score = 46.9 bits (112), Expect = 2e-06
Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Query: 100 DHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 159
++ IE P +++D HAEL +I I D+ +V+ + AIK + +K
Sbjct: 207 PFGLLLIEQPLEEEDVLGHAELARRIQ--TPICLDESIVS-ARAAADAIKLGAVQIVNIK 263
Query: 160 VNQIGSVTESIEAVKMSKRAGWGVM 184
++G E+ + G V
Sbjct: 264 PGRVGGYLEARRVHDVCAAHGIPVW 288
>1wuf_A Hypothetical protein LIN2664; structural genomics, unknown
function, nysgxrc target T2186, superfamily, protein
structure initiative, PSI; 2.90A {Listeria innocua}
SCOP: c.1.11.2 d.54.1.1
Length = 393
Score = 46.9 bits (112), Expect = 2e-06
Identities = 24/115 (20%), Positives = 48/115 (41%), Gaps = 4/115 (3%)
Query: 106 IEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGS 165
IE PF D+ HA L ++ +I D+ + + K VE+A +C A+ LK+ ++G
Sbjct: 232 IEQPFGTKDFVDHAWLQKQL--KTRICLDENIRS-VKDVEQAHSIGSCRAINLKLARVGG 288
Query: 166 VTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERL 220
++ +++ + V E ++++ + G S R
Sbjct: 289 MSSALKIAEYCALNEILVW-CGGMLEAGVGRAHNIALAARNEFVFPGDISASNRF 342
>1r0m_A N-acylamino acid racemase; isomerase; 1.30A {Deinococcus
radiodurans} SCOP: c.1.11.2 d.54.1.1 PDB: 1xpy_A* 1xs2_A
2ggj_A 2ggi_A 2ggh_A* 2ggg_A* 2fkp_A
Length = 375
Score = 46.9 bits (112), Expect = 2e-06
Identities = 24/115 (20%), Positives = 42/115 (36%), Gaps = 4/115 (3%)
Query: 106 IEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGS 165
IE P DD HAEL +I + D+ + + KA+ + LKV ++G
Sbjct: 219 IEQPLAWDDLVDHAELARRIR--TPLCLDESVAS-ASDARKALALGAGGVINLKVARVGG 275
Query: 166 VTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERL 220
ES +++ G V E+ ++ + + G + R
Sbjct: 276 HAESRRVHDVAQSFGAPVW-CGGMLESGIGRAHNIHLSTLSNFRLPGDTSSASRY 329
>2zc8_A N-acylamino acid racemase; octamer, TIM beta/alpha-barrel,
metal-binding, metal binding; 1.95A {Thermus
thermophilus}
Length = 369
Score = 46.1 bits (110), Expect = 4e-06
Identities = 26/121 (21%), Positives = 46/121 (38%), Gaps = 4/121 (3%)
Query: 100 DHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 159
+ + IE P DD HA+L ++ I D+ L ++ KAI+ +K
Sbjct: 206 ELRLDYIEQPLAYDDLLDHAKLQRELS--TPICLDESLTG-AEKARKAIELGAGRVFNVK 262
Query: 160 VNQIGSVTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSER 219
++G ES+ +++ AG + E +L + G K G + R
Sbjct: 263 PARLGGHGESLRVHALAESAGIPLW-MGGMLEAGVGRAHNLHLATLPGFTKPGDVSSASR 321
Query: 220 L 220
Sbjct: 322 Y 322
>2pge_A MENC; OSBS, NYSGXRC, PSI-II, structural genomics, protein structure
initiative; 1.60A {Desulfotalea psychrophila LSV54}
Length = 377
Score = 45.9 bits (109), Expect = 5e-06
Identities = 17/89 (19%), Positives = 36/89 (40%), Gaps = 5/89 (5%)
Query: 98 ISDHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNA-- 155
+S + SIE P Q W A L + I D+ L+ +++
Sbjct: 231 LSQFHLHSIEQPIRQHQWSEMAALCANSP--LAIALDEELIG-LGAEQRSAMLDAIRPQY 287
Query: 156 LLLKVNQIGSVTESIEAVKMSKRAGWGVM 184
++LK + +G + + +++++ G G
Sbjct: 288 IILKPSLLGGFHYAGQWIELARERGIGFW 316
>1wue_A Mandelate racemase/muconate lactonizing enzyme FA protein;
structural genomics, unknown function, nysgxrc target
T2185; 2.10A {Enterococcus faecalis} SCOP: c.1.11.2
d.54.1.1
Length = 386
Score = 45.3 bits (108), Expect = 7e-06
Identities = 19/85 (22%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 100 DHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 159
+ + IE PF DD+ HA+L ++ +I D+ + + K + A+ +C ++ LK
Sbjct: 226 HYQLAMIEQPFAADDFLDHAQLQRELK--TRICLDENIRS-LKDCQVALALGSCRSINLK 282
Query: 160 VNQIGSVTESIEAVKMSKRAGWGVM 184
+ ++G + E+++ + V
Sbjct: 283 IPRVGGIHEALKIAAFCQENDLLVW 307
>1nu5_A Chloromuconate cycloisomerase; enzyme, dehalogenation; 1.95A
{Pseudomonas SP} SCOP: c.1.11.2 d.54.1.1
Length = 370
Score = 45.4 bits (108), Expect = 7e-06
Identities = 15/85 (17%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 100 DHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 159
+ + +E P + ++ LT + G V I+ D+ L + + ++ +A LK
Sbjct: 213 EAGVELVEQPVPRANFGALRRLTEQNG--VAILADESLSS-LSSAFELARDHAVDAFSLK 269
Query: 160 VNQIGSVTESIEAVKMSKRAGWGVM 184
+ +G + +++ +++ AG
Sbjct: 270 LCNMGGIANTLKVAAVAEAAGISSY 294
>3mwc_A Mandelate racemase/muconate lactonizing protein; enolase,
structural genomics, protein structure initiative,
nysgrc; 1.80A {Kosmotoga olearia}
Length = 400
Score = 44.3 bits (105), Expect = 2e-05
Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 106 IEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGS 165
E P + EL +I I D+ L++ + E K N +K+ ++G
Sbjct: 235 HEQPLHYEALLDLKELGERIE--TPICLDESLIS-SRVAEFVAKLGISNIWNIKIQRVGG 291
Query: 166 VTESIEAVKMSKRAGWGVM 184
+ E+I+ K++ G +
Sbjct: 292 LLEAIKIYKIATDNGIKLW 310
>3dgb_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone
binding, isomeras structural genomics, PSI-2; HET: MUC;
1.70A {Pseudomonas fluorescens} PDB: 3ct2_A* 3fj4_A*
1muc_A 1bkh_A 3muc_A 2muc_A 1f9c_A
Length = 382
Score = 42.6 bits (101), Expect = 5e-05
Identities = 14/85 (16%), Positives = 32/85 (37%), Gaps = 3/85 (3%)
Query: 100 DHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 159
+ I IE P +++ L I+ D+ + + +E + LK
Sbjct: 219 GNGIDLIEQPISRNNRAGMVRLNASSP--APIMADESIEC-VEDAFNLAREGAASVFALK 275
Query: 160 VNQIGSVTESIEAVKMSKRAGWGVM 184
+ + G ++ +++ AG G+
Sbjct: 276 IAKNGGPRATLRTAAIAEAAGIGLY 300
>3fcp_A L-Ala-D/L-Glu epimerase, A muconate lactonizing enzyme; structural
genomics, nysgrc,target 9450E, PSI-2; 1.80A {Klebsiella
pneumoniae subsp}
Length = 381
Score = 42.3 bits (100), Expect = 7e-05
Identities = 16/85 (18%), Positives = 33/85 (38%), Gaps = 3/85 (3%)
Query: 100 DHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 159
+ IE P D L+ +I I+ D+ + T + ++ A LK
Sbjct: 218 AMGVDLIEQPVSAHDNAALVRLSQQIE--TAILADEAVAT-AYDGYQLAQQGFTGAYALK 274
Query: 160 VNQIGSVTESIEAVKMSKRAGWGVM 184
+ + G + ++++ AG G+
Sbjct: 275 IAKAGGPNSVLALARVAQAAGIGLY 299
>3i6e_A Muconate cycloisomerase I; structural genomics, NYSGXRC, targer
9468A, muconate lactonizing enzyme, PSI-2, protein
structure initiative; 1.70A {Ruegeria pomeroyi} PDB:
3i6t_A
Length = 385
Score = 41.9 bits (99), Expect = 9e-05
Identities = 23/114 (20%), Positives = 44/114 (38%), Gaps = 4/114 (3%)
Query: 100 DHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 159
IE P +E A L G V ++ D+ + P+ + +A E C+ + +K
Sbjct: 217 QFQPDFIEQPVRAHHFELMARLRGLT--DVPLLADESVYG-PEDMVRAAHEGICDGVSIK 273
Query: 160 VNQIGSVTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGA 213
+ + G +T + +++ G E +A + AT +I G
Sbjct: 274 IMKSGGLTRAQTVARIAAAHGLMAYGGD-MFEAGLAHLAGTHMIAATPEITLGC 326
>3dg3_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone
binding; 1.60A {Mycobacterium smegmatis} PDB: 3dg6_A*
3dg7_A*
Length = 367
Score = 41.5 bits (98), Expect = 1e-04
Identities = 16/85 (18%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
Query: 100 DHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 159
D ++ E+ DD L G++ + + D+ + T P V + + + A+ +K
Sbjct: 210 DLDLLFAEELCPADDVLSRRRLVGQLD--MPFIADESVPT-PADVTREVLGGSATAISIK 266
Query: 160 VNQIGSVTESIEAVKMSKRAGWGVM 184
+ G T S +++ G ++
Sbjct: 267 TARTG-FTGSTRVHHLAEGLGLDMV 290
>1chr_A Chloromuconate cycloisomerase; 3.00A {Ralstonia eutropha} SCOP:
c.1.11.2 d.54.1.1 PDB: 2chr_A
Length = 370
Score = 41.5 bits (98), Expect = 1e-04
Identities = 14/79 (17%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 106 IEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGS 165
IE P +++ + L+ V I+ D+ L T ++++ + LK+ +G
Sbjct: 219 IEQPVGRENTQALRRLSDNN--RVAIMADESLST-LASAFDLARDRSVDVFSLKLCNMGG 275
Query: 166 VTESIEAVKMSKRAGWGVM 184
V+ + + +++ +G
Sbjct: 276 VSATQKIAAVAEASGIASY 294
>1tkk_A Similar to chloromuconate cycloisomerase; epimerase, enolase super
family,; 2.10A {Bacillus subtilis} SCOP: c.1.11.2
d.54.1.1 PDB: 1jpm_A
Length = 366
Score = 41.5 bits (98), Expect = 1e-04
Identities = 14/79 (17%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 106 IEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGS 165
+E P +DD ++T I+ D+ + T P++ + ++ ++ + + +K+ + G
Sbjct: 218 VEQPVHKDDLAGLKKVTDATD--TPIMADESVFT-PRQAFEVLQTRSADLINIKLMKAGG 274
Query: 166 VTESIEAVKMSKRAGWGVM 184
++ + + M++ G M
Sbjct: 275 ISGAEKINAMAEACGVECM 293
>2ozt_A TLR1174 protein; structural genomics, O-succinylbenzoate synthase,
PSI, protein structure initiative; 1.42A {Synechococcus
elongatus} PDB: 3h7v_A
Length = 332
Score = 41.2 bits (97), Expect = 1e-04
Identities = 14/88 (15%), Positives = 31/88 (35%), Gaps = 4/88 (4%)
Query: 99 SDHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLL 158
+ I +E P D W+ L + I D+ +V+ V++ + ++
Sbjct: 188 GNGKIEYVEQPLPPDQWQALLSLAQTVT--TAIALDESVVS-AAEVQRWVDRGWPGFFVI 244
Query: 159 KVNQIGSVTESIEAVKMSKRAGWGVMAS 186
K G +S+ + ++ S
Sbjct: 245 KTALFGDP-DSLSLLLRRGLEPQRLVFS 271
>3r0u_A Enzyme of enolase superfamily; structural genomics, putative
epimerase, PSI-biolog YORK structural genomics research
consortium; HET: MSE TAR; 1.90A {Francisella
philomiragia subsp} PDB: 3px5_A* 3r0k_A* 3r10_A 3r11_A
3r1z_A*
Length = 379
Score = 41.5 bits (98), Expect = 1e-04
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 100 DHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 159
+ IE P D + AE+T ++ +V D+ + K E+ I E+ CN + +K
Sbjct: 213 SLNVEIIEQPVKYYDIKAMAEITKFS--NIPVVADESVFD-AKDAERVIDEQACNMINIK 269
Query: 160 VNQIGSVTESIEAVKMSKRAGWGVM 184
+ + G + E+ + K++ AG M
Sbjct: 270 LAKTGGILEAQKIKKLADSAGISCM 294
>3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target
9450D, isomerase, PSI-2, protein structure initiative;
2.20A {Corynebacterium glutamicum}
Length = 383
Score = 41.1 bits (97), Expect = 2e-04
Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 106 IEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGS 165
E P DD E E+T + +V ++ D+ + T P +K + + + LK + G
Sbjct: 225 FEQPTPADDLETLREITRRT--NVSVMADESVWT-PAEALAVVKAQAADVIALKTTKHGG 281
Query: 166 VTESIEAVKMSKRAGWGVM 184
+ ES + +++ G
Sbjct: 282 LLESKKIAAIAEAGGLACH 300
>3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A
{Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A*
3k1g_A* 3kum_A*
Length = 354
Score = 40.3 bits (95), Expect = 3e-04
Identities = 17/85 (20%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 100 DHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 159
D+ I +E P + D E +T ++ I+ D+ + + +K+ T + + +K
Sbjct: 208 DYQIELVEQPVKRRDLEGLKYVTSQVN--TTIMADESCFD-AQDALELVKKGTVDVINIK 264
Query: 160 VNQIGSVTESIEAVKMSKRAGWGVM 184
+ + G + E+++ ++ + AG M
Sbjct: 265 LMKCGGIHEALKINQICETAGIECM 289
>2p8b_A Mandelate racemase/muconate lactonizing enzyme family protein;
enolase superfamily, prediction of function; HET: NSK;
1.70A {Bacillus cereus atcc 14579} PDB: 2p88_A* 2p8c_A*
Length = 369
Score = 38.8 bits (91), Expect = 0.001
Identities = 15/79 (18%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 106 IEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGS 165
IE P DD + A + K + ++ D+ L + + + + IK + + + +K+ + G
Sbjct: 217 IEQPVIADDIDAMAHIRSKT--DLPLMIDEGLKS-SREMRQIIKLEAADKVNIKLMKCGG 273
Query: 166 VTESIEAVKMSKRAGWGVM 184
+ +++ ++ AG
Sbjct: 274 IYPAVKLAHQAEMAGIECQ 292
>3q45_A Mandelate racemase/muconate lactonizing enzyme FA possible
chloromuconate cycloisomerase...; (beta/alpha)8-barrel;
3.00A {Cytophaga hutchinsonii} PDB: 3q4d_A
Length = 368
Score = 38.0 bits (89), Expect = 0.002
Identities = 13/85 (15%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Query: 100 DHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 159
+ I E+P ++ + ++ + I+ D+ E+ I+ + C++ LK
Sbjct: 209 PYNIQHCEEPVSRNLYTALPKIRQACR--IPIMADESCCN-SFDAERLIQIQACDSFNLK 265
Query: 160 VNQIGSVTESIEAVKMSKRAGWGVM 184
+++ +T ++ ++++++A V
Sbjct: 266 LSKSAGITNALNIIRLAEQAHMPVQ 290
>3my9_A Muconate cycloisomerase; structural genomics, PSI-2, protein
structure INI NEW YORK SGX research center for
structural genomics, nysgx; 2.20A {Azorhizobium
caulinodans}
Length = 377
Score = 38.0 bits (89), Expect = 0.002
Identities = 11/82 (13%), Positives = 32/82 (39%), Gaps = 3/82 (3%)
Query: 106 IEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGS 165
IE P + + A + I+ D+ + + ++ + +A+ +K+ + G
Sbjct: 222 IEQPVPRRHLDAMAGFAAAL--DTPILADESCFD-AVDLMEVVRRQAADAISVKIMKCGG 278
Query: 166 VTESIEAVKMSKRAGWGVMASH 187
+ ++ + ++ AG
Sbjct: 279 LMKAQSLMAIADTAGLPGYGGT 300
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.1 bits (85), Expect = 0.004
Identities = 20/126 (15%), Positives = 45/126 (35%), Gaps = 30/126 (23%)
Query: 27 NIQESYEGFELLKTAIAKGGYIGKIVIG---MDVAASEFYDSKDKTY-DLNFKEE--NND 80
NI ++++ +L+ + Y IG ++ E + D F E+ +D
Sbjct: 454 NIPKTFDSDDLIPPYL--DQYFYSH-IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD 510
Query: 81 GSQKVSGDGLKNV------YRSFISDHPIVSIEDP-FDQ--DDWEH----HAE--LTGKI 125
+ + + N Y+ +I D+ DP +++ + E + K
Sbjct: 511 STAWNASGSILNTLQQLKFYKPYICDN------DPKYERLVNAILDFLPKIEENLICSKY 564
Query: 126 GRHVQI 131
++I
Sbjct: 565 TDLLRI 570
>2pmq_A Mandelate racemase/muconate lactonizing enzyme; structural
genomics, isomerase, PSI-2; HET: MSE; 1.72A {Roseovarius
SP}
Length = 377
Score = 36.5 bits (85), Expect = 0.006
Identities = 10/79 (12%), Positives = 22/79 (27%), Gaps = 5/79 (6%)
Query: 106 IEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGS 165
+E P + +E + + D+ + V A + +KV++IG
Sbjct: 219 MEQPCN--SFEDLEAIRPLCH--HALYMDEDGTS-LNTVITAAATSLVDGFGMKVSRIGG 273
Query: 166 VTESIEAVKMSKRAGWGVM 184
+
Sbjct: 274 LQHMRAFRDFCAARNLPHT 292
>4e8g_A Enolase, mandelate racemase/muconate lactonizing enzyme, N domain
protein; putative racemase, nysgrc, structural genomics,
PSI-biology; 2.00A {Paracoccus denitrificans}
Length = 391
Score = 36.1 bits (84), Expect = 0.008
Identities = 13/79 (16%), Positives = 29/79 (36%), Gaps = 5/79 (6%)
Query: 106 IEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGS 165
+E P + E A + G++ I D+ V +A + C+ +K+ +IG
Sbjct: 240 LEQPCN--TLEEIAAIRGRV--QHGIYLDESGED-LSTVIRAAGQGLCDGFGMKLTRIGG 294
Query: 166 VTESIEAVKMSKRAGWGVM 184
+ + + +
Sbjct: 295 LQQMAAFRDICEARALPHS 313
>3eez_A Putative mandelate racemase/muconate lactonizing enzyme; structural
genomics, unknown function, PSI-2, protein structure
initiative; 2.80A {Silicibacter pomeroyi}
Length = 378
Score = 35.4 bits (82), Expect = 0.012
Identities = 15/115 (13%), Positives = 38/115 (33%), Gaps = 6/115 (5%)
Query: 106 IEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGS 165
E P + + A + + D+ LVT + + ++ +K+N++G
Sbjct: 219 FEQPGE--TLDDIAAIRPLH--SAPVSVDECLVT-LQDAARVARDGLAEVFGIKLNRVGG 273
Query: 166 VTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERL 220
+T + ++ G + +G + L + A + +
Sbjct: 274 LTRAARMRDIALTHGIDMFV-MATGGSVLADAEALHLAATIPDHACHAVWACQDM 327
>1r6w_A OSB synthase, O-succinylbenzoate synthase, OSBS; enolase
superfamily, TIM barrel, capping alpha+beta domain,
lyase; HET: 164; 1.62A {Escherichia coli} SCOP: c.1.11.2
d.54.1.1 PDB: 1fhv_A* 1fhu_A 2ofj_A 3gc2_A*
Length = 322
Score = 35.5 bits (82), Expect = 0.013
Identities = 16/86 (18%), Positives = 29/86 (33%), Gaps = 7/86 (8%)
Query: 101 HPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKV 160
I +E+P D + G + I D+ L A+++K
Sbjct: 186 DRIAFLEEPCKTRDD--SRAFARETG--IAIAWDESLREPDFAFVAEEG---VRAVVIKP 238
Query: 161 NQIGSVTESIEAVKMSKRAGWGVMAS 186
GS+ + E V+ + G + S
Sbjct: 239 TLTGSLEKVREQVQAAHALGLTAVIS 264
>2qde_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-II,
NYSGXRC, enolase, structural genomics, protei structure
initiative, PSI-2; 1.93A {Azoarcus SP}
Length = 397
Score = 35.4 bits (82), Expect = 0.013
Identities = 16/85 (18%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
Query: 100 DHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 159
+ + IE P D + A L GK+ I D+ + I + + L++K
Sbjct: 214 KYNLSKIEQPLPAWDLDGMARLRGKV--ATPIYADESAQE-LHDLLAIINKGAADGLMIK 270
Query: 160 VNQIGSVTESIEAVKMSKRAGWGVM 184
+ G + ++ + +++ A V+
Sbjct: 271 TQKAGGLLKAQRWLTLARLANLPVI 295
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 35.6 bits (82), Expect = 0.013
Identities = 25/137 (18%), Positives = 45/137 (32%), Gaps = 27/137 (19%)
Query: 80 DGSQKVSGDGLKNVYRSFISDHP-IVSIE-DPFDQDDWEHHAELTGKIGRHVQIVGD-DL 136
+ V +K Y + I +H I IE + F+ + E + +++ + DL
Sbjct: 880 KTKEPVDDKDVKAKYETSILEHSGIRLIEPELFNGYNPEKKEMIQ-------EVIVEEDL 932
Query: 137 LVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAGWGVMASHRSGETEDTF 196
+ E A + K + + + +I E + G T
Sbjct: 933 EPFEASK-ETAEQFKHQHGDKVDIFEIPETGEYSVKLL--------------KGATLYIP 977
Query: 197 -IADLSVGLATGQIKTG 212
+A GQI TG
Sbjct: 978 KALRFDRLVA-GQIPTG 993
>3u9i_A Mandelate racemase/muconate lactonizing enzyme, C domain protein;
structural genomics, PSI-biology; 2.90A {Roseiflexus SP}
Length = 393
Score = 34.6 bits (80), Expect = 0.023
Identities = 17/79 (21%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 106 IEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGS 165
E P +DD E LT R V + D+ + + + + + L +K+ + G
Sbjct: 250 FEQPVAKDDEEGLRRLTAT--RRVPVAADESVAS-ATDAARLARNAAVDVLNIKLMKCG- 305
Query: 166 VTESIEAVKMSKRAGWGVM 184
+ E+++ +++ AG +M
Sbjct: 306 IVEALDIAAIARTAGLHLM 324
>3s5s_A Mandelate racemase/muconate lactonizing enzyme FA protein;
PSI-biology, structural genomics, NEW YORK structural
genomi research consortium; 2.40A {Sorangium cellulosum}
Length = 389
Score = 33.8 bits (78), Expect = 0.041
Identities = 19/85 (22%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 100 DHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 159
+ +E P +DDW+ E+T + G V + D+ + + V + E+ + +K
Sbjct: 215 GADVALLEQPVPRDDWDGMKEVTRRAG--VDVAADESAAS-AEDVLRVAAERAATVVNIK 271
Query: 160 VNQIGSVTESIEAVKMSKRAGWGVM 184
+ + G + E+++ +++ AG G+M
Sbjct: 272 LMK-GGIAEALDIAAVARAAGLGLM 295
>2zad_A Muconate cycloisomerase; muconate lactonizing enzyme (MLE), TM0006,
struct genomics, NPPSFA; HET: 1PE; 1.60A {Thermotoga
maritima} PDB: 3deq_A 3der_A* 3des_A* 3dfy_A
Length = 345
Score = 33.0 bits (76), Expect = 0.067
Identities = 14/82 (17%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 103 IVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQ 162
I E P ++D E + + D+ T V + +KE+ + + +K+ +
Sbjct: 212 IAVYEQPVRREDIEGLKFVRFH--SPFPVAADESART-KFDVMRLVKEEAVDYVNIKLMK 268
Query: 163 IGSVTESIEAVKMSKRAGWGVM 184
+++++ V++++ +G +M
Sbjct: 269 -SGISDALAIVEIAESSGLKLM 289
>3ro6_B Putative chloromuconate cycloisomerase; TIM barrel; 2.20A
{Methylococcus capsulatus} PDB: 3rit_A
Length = 356
Score = 33.0 bits (76), Expect = 0.068
Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 2/85 (2%)
Query: 100 DHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 159
+ I IE PF + L I +I D+ L+ A C +K
Sbjct: 209 ELGIEFIEQPFPAGRTDWLRALPKAI--RRRIAADESLLGPADAFALAAPPAACGIFNIK 266
Query: 160 VNQIGSVTESIEAVKMSKRAGWGVM 184
+ + G + + +++ AG +M
Sbjct: 267 LMKCGGLAPARRIATIAETAGIDLM 291
>3ik4_A Mandelate racemase/muconate lactonizing protein; structural
genomics, enolase, epimerase, PSI-2, protein STRU
initiative; 2.10A {Herpetosiphon aurantiacus atcc 23779}
Length = 365
Score = 32.2 bits (74), Expect = 0.12
Identities = 17/79 (21%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 106 IEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGS 165
E P ++DW A++T + + D+ + V + +E T + + +K+ +
Sbjct: 220 FEQPLPREDWAGMAQVTAQS--GFAVAADESARS-AHDVLRIAREGTASVINIKLMK-AG 275
Query: 166 VTESIEAVKMSKRAGWGVM 184
V E ++ + +++ AG G+M
Sbjct: 276 VAEGLKMIAIAQAAGLGLM 294
>3fv9_G Mandelate racemase/muconate lactonizing enzyme; structural
genomics, mandelate racemase/muconatelactonizing
hydrolase, PSI-2; 1.90A {Roseovarius nubinhibens ism}
PDB: 2pce_A
Length = 386
Score = 32.3 bits (74), Expect = 0.15
Identities = 21/114 (18%), Positives = 48/114 (42%), Gaps = 6/114 (5%)
Query: 100 DHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 159
+ +E P W L + + ++ D+L+ T + AI++ C+ + LK
Sbjct: 219 PGLDIVLEAPCA--SWAETKSLRARC--ALPLLLDELIQT-ETDLIAAIRDDLCDGVGLK 273
Query: 160 VNQIGSVTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGA 213
V++ G +T + ++ AG + + ++ +F A L + +T +
Sbjct: 274 VSKQGGITPMLRQRAIAAAAGMVMSV-QDTVGSQISFAAILHLAQSTPRHLLRC 326
>1jpd_X L-Ala-D/L-Glu epimerase; enolase superfamily, muconate lactonizing
enzyme subgroup, alpha/beta barrel, structural genomics,
isomerase; 2.60A {Escherichia coli} SCOP: c.1.11.2
d.54.1.1
Length = 324
Score = 31.8 bits (73), Expect = 0.15
Identities = 12/85 (14%), Positives = 30/85 (35%), Gaps = 7/85 (8%)
Query: 100 DHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 159
D + +E P D + I D+ ++ + +K
Sbjct: 198 DLGVAMLEQPLPAQDDAALENFI----HPLPICADES-CHTRSNLKALKG--RYEMVNIK 250
Query: 160 VNQIGSVTESIEAVKMSKRAGWGVM 184
+++ G +TE++ ++ G+ +M
Sbjct: 251 LDKTGGLTEALALATEARAQGFSLM 275
>2ps2_A Putative mandelate racemase/muconate lactonizing enzyme; structural
genomics, NYSGXRC, target 9440A, enolase superfamily,
PSI-2; 1.80A {Aspergillus oryzae RIB40}
Length = 371
Score = 31.5 bits (72), Expect = 0.21
Identities = 16/88 (18%), Positives = 31/88 (35%), Gaps = 5/88 (5%)
Query: 100 DHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 159
++E P W L K + I+ D+L + K + + + LK
Sbjct: 215 HGLDFALEAPCA--TWRECISLRRKT--DIPIIYDELATN-EMSIVKILADDAAEGIDLK 269
Query: 160 VNQIGSVTESIEAVKMSKRAGWGVMASH 187
+++ G +T + AG+ V
Sbjct: 270 ISKAGGLTRGRRQRDICLAAGYSVSVQE 297
>2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase,
structural genomics, PSI, protein structu initiative,
nysgrc; 2.00A {Roseovarius nubinhibens}
Length = 379
Score = 31.5 bits (72), Expect = 0.25
Identities = 13/101 (12%), Positives = 34/101 (33%), Gaps = 6/101 (5%)
Query: 106 IEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGS 165
+E P +E ++ + D+ + ++ + ++ LK++ +G
Sbjct: 219 LEQPCR--SYEECQQVRRVAD--QPMKLDECVTG-LHMAQRIVADRGAEICCLKISNLGG 273
Query: 166 VTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLAT 206
++++ V+A S E A +T
Sbjct: 274 LSKARRTRDFLIDNRMPVVA-EDSWGGEIASAAVAHFAAST 313
>2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small
metabolism, PSI-II, NYSGXRC, structural genomics, PR
structure initiative; 1.95A {Sinorhizobium meliloti}
Length = 384
Score = 31.1 bits (71), Expect = 0.33
Identities = 23/101 (22%), Positives = 43/101 (42%), Gaps = 4/101 (3%)
Query: 106 IEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGS 165
IE P A + K+ + IV D T V + +++ + + + +IG
Sbjct: 221 IEQPTVSWSIPAMAHVREKV--GIPIVADQAAFT-LYDVYEICRQRAADMICIGPREIGG 277
Query: 166 VTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLAT 206
+ ++A +++ AG + H S T T A+ +GLA
Sbjct: 278 IQPMMKAAAVAEAAGLKIC-IHSSFTTGITTCAEHHIGLAI 317
>1b9m_A Protein (mode); DNA-binding, gene regulation, winged helix turn
helix, molybdate, OB fold, transcription; 1.75A
{Escherichia coli} SCOP: a.4.5.8 b.40.6.2 b.40.6.2 PDB:
1b9n_A 1o7l_A 1h9s_A 1h9r_A 1h9s_B
Length = 265
Score = 29.2 bits (65), Expect = 1.2
Identities = 9/61 (14%), Positives = 24/61 (39%), Gaps = 10/61 (16%)
Query: 124 KIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAGWGV 183
+ + + L +P+R+ LL + GS+++ + +S ++ W
Sbjct: 5 QAEILLTLKLQQKLFADPRRIS----------LLKHIALSGSISQGAKDAGISYKSAWDA 54
Query: 184 M 184
+
Sbjct: 55 I 55
>2ijl_A AGR_C_4647P, molybdenum-binding transcriptional repressor;
structural GE DNA-binding protein, PSI-2, PROT structure
initiative; 2.30A {Agrobacterium tumefaciens str}
Length = 135
Score = 27.6 bits (61), Expect = 2.1
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 155 ALLLKVNQIGSVTESIEAVKMSKRAGWGVM 184
L+ + + GS++ + A+ MS R W ++
Sbjct: 30 ELMQLIAETGSISAAGRAMDMSYRRAWLLV 59
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.9 bits (64), Expect = 2.2
Identities = 34/161 (21%), Positives = 49/161 (30%), Gaps = 52/161 (32%)
Query: 102 PIVSIEDPFDQDDWEHHAEL----TGKI-----GRHVQIVGDDLLVTNPKRVEKAIKEKT 152
P+ S PF H+ L + I +V D+ + P V T
Sbjct: 422 PVAS---PF-------HSHLLVPASDLINKDLVKNNVSFNAKDIQI--P--VYD-----T 462
Query: 153 CNALLLKVNQIGSVTESIEAVKM--SKRAGWGVMASHRSGETEDTFIADLSVGLATGQIK 210
+ L+V GS++E I V W + + T I D G
Sbjct: 463 FDGSDLRVLS-GSISERI--VDCIIRLPVKW--ETTTQFKATH---ILDF------G--- 505
Query: 211 TGAPCRSERLAKYNQLLRIEEELGPAAIYAGTKFRAPVEPY 251
G L R ++ G I AGT P + Y
Sbjct: 506 PGGASGLGVLTH-----RNKDGTGVRVIVAGTLDINPDDDY 541
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP,
pyridoxal phosphate, HOMO- oligomerization, unknown
function; 1.70A {Methanocaldococcus jannaschii} SCOP:
c.67.1.8 PDB: 2aev_A*
Length = 374
Score = 28.3 bits (63), Expect = 2.5
Identities = 3/46 (6%), Positives = 15/46 (32%), Gaps = 6/46 (13%)
Query: 139 TNPKRVEKAIKEKTCNALLLKVN----QIGSVTESIEAVKMSKRAG 180
+ I + T +++ + ++ + + + +K
Sbjct: 129 DKVGEILNKIDKDT--LVIITGSTMDLKVIELENFKKVINTAKNKE 172
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase,
structural genomics; HET: PLP; 2.40A {Archaeoglobus
fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Length = 371
Score = 27.8 bits (62), Expect = 3.3
Identities = 9/76 (11%), Positives = 21/76 (27%), Gaps = 11/76 (14%)
Query: 116 EHHA-----ELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKV------NQIG 164
H++ E G V P+ + I+E ++ G
Sbjct: 102 CHYSSYVAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYG 161
Query: 165 SVTESIEAVKMSKRAG 180
++ + + K+
Sbjct: 162 NLPDVKKIAKVCSEYD 177
>3ijl_A Muconate cycloisomerase; enolase superfamily, dipeptide epimerase,
L-Pro-D-Glu, nonpr binding; HET: DGL; 1.50A {Bacteroides
thetaiotaomicron} PDB: 3iji_A* 3ijq_A*
Length = 338
Score = 27.9 bits (63), Expect = 3.4
Identities = 15/85 (17%), Positives = 34/85 (40%), Gaps = 5/85 (5%)
Query: 100 DHPIVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 159
+ IV IE P ++ + A +T + + + D+ + V + +K
Sbjct: 199 EKGIVMIEQPMPKEQLDDIAWVTQQS--PLPVFADE-SLQRLGDVAALK--GAFTGINIK 253
Query: 160 VNQIGSVTESIEAVKMSKRAGWGVM 184
+ + + E+ + V ++ G VM
Sbjct: 254 LMKCTGMREAWKMVTLAHALGMRVM 278
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc
genomics, protein structure initiative; 2.20A
{Campylobacter jejuni}
Length = 464
Score = 27.2 bits (61), Expect = 5.4
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 154 NALLLKVNQIGSVTESIEAVKMSKRAG 180
N L + + Q+ S+ + E KMSKRAG
Sbjct: 265 NNLEIILAQMVSLLKDGEPYKMSKRAG 291
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.134 0.383
Gapped
Lambda K H
0.267 0.0733 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,876,847
Number of extensions: 234976
Number of successful extensions: 554
Number of sequences better than 10.0: 1
Number of HSP's gapped: 507
Number of HSP's successfully gapped: 69
Length of query: 251
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 160
Effective length of database: 4,160,982
Effective search space: 665757120
Effective search space used: 665757120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (25.3 bits)