RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 040341
(251 letters)
>d1w6ta1 c.1.11.1 (A:138-433) Enolase {Streptococcus pneumoniae
[TaxId: 1313]}
Length = 296
Score = 274 bits (701), Expect = 4e-93
Identities = 103/246 (41%), Positives = 159/246 (64%), Gaps = 7/246 (2%)
Query: 3 LQAVIKKKYGQDATNVGDEGGFAPNIQESYEGFELLKTAIAKGGYIG--KIVIGMDVAAS 60
L+ ++K + + T VGDEGGFAP + + +G E + AI GY+ + +G D A+S
Sbjct: 52 LKKILKSRGLE--TAVGDEGGFAPRFEGTEDGVETILAAIEAAGYVPGKDVFLGFDCASS 109
Query: 61 EFYDSKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHHAE 120
EFYD + ++ + +G+ + + ++ +PI++IED D++DW+
Sbjct: 110 EFYD--KERKVYDYTKFEGEGAAVRTSAEQIDYLEELVNKYPIITIEDGMDENDWDGWKA 167
Query: 121 LTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAG 180
LT ++G+ VQ+VGDD VTN + + I+E N++L+KVNQIG++TE+ EA++M+K AG
Sbjct: 168 LTERLGKKVQLVGDDFFVTNTDYLARGIQEGAANSILIKVNQIGTLTETFEAIEMAKEAG 227
Query: 181 WGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGPAAIYA 240
+ + SHRSGETED+ IAD++V GQIKTG+ R++R+AKYNQLLRIE++LG A Y
Sbjct: 228 YTAVVSHRSGETEDSTIADIAVATNAGQIKTGSLSRTDRIAKYNQLLRIEDQLGEVAEYR 287
Query: 241 GTK-FR 245
G K F
Sbjct: 288 GLKSFY 293
>d2al1a1 c.1.11.1 (A:142-436) Enolase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 295
Score = 267 bits (683), Expect = 2e-90
Identities = 144/243 (59%), Positives = 178/243 (73%), Gaps = 4/243 (1%)
Query: 3 LQAVIKKKYGQDATNVGDEGGFAPNIQESYEGFELLKTAIAKGGYIGKIVIGMDVAASEF 62
L+++ KK+YG A NVGDEGG APNIQ + E +L+ AI G+ GK+ IG+D A+SEF
Sbjct: 52 LKSLTKKRYGASAGNVGDEGGVAPNIQTAEEALDLIVDAIKAAGHDGKVKIGLDCASSEF 111
Query: 63 YDSKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHHAELT 122
+ KD YDL+FK N+D S+ ++G L ++Y S + +PIVSIEDPF +DDWE +
Sbjct: 112 F--KDGKYDLDFKNPNSDKSKWLTGPQLADLYHSLMKRYPIVSIEDPFAEDDWEAWSHFF 169
Query: 123 GKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAGWG 182
G IV DDL VTNPKR+ AI++K +ALLLKVNQIG+++ESI+A + S AGWG
Sbjct: 170 KTAGIQ--IVADDLTVTNPKRIATAIEKKAADALLLKVNQIGTLSESIKAAQDSFAAGWG 227
Query: 183 VMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGPAAIYAGT 242
VM SHRSGETEDTFIADL VGL TGQIKTGAP RSERLAK NQLLRIEEELG A++AG
Sbjct: 228 VMVSHRSGETEDTFIADLVVGLRTGQIKTGAPARSERLAKLNQLLRIEEELGDNAVFAGE 287
Query: 243 KFR 245
F
Sbjct: 288 NFH 290
>d2ptza1 c.1.11.1 (A:139-429) Enolase {Trypanosoma brucei [TaxId:
5691]}
Length = 291
Score = 263 bits (674), Expect = 3e-89
Identities = 133/242 (54%), Positives = 168/242 (69%), Gaps = 3/242 (1%)
Query: 3 LQAVIKKKYGQDATNVGDEGGFAPNIQESYEGFELLKTAIAKGGYIGKIVIGMDVAASEF 62
L+ +IKKKYGQDA NVGDEGGFAP I++ E +L AI + G+ GK I MD AASE
Sbjct: 52 LRGIIKKKYGQDAVNVGDEGGFAPPIKDINEPLPILMEAIEEAGHRGKFAICMDCAASET 111
Query: 63 YDSKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHHAELT 122
YD K + Y+L FK V+ + L+ Y + D+PIVSIEDP+DQDD+ A +T
Sbjct: 112 YDEKKQQYNLTFKSPEP---TWVTAEQLRETYCKWAHDYPIVSIEDPYDQDDFAGFAGIT 168
Query: 123 GKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAGWG 182
+ QIVGDDL VTN +R++ AI++K CN+LLLK+NQIG+++E+I + K+ GW
Sbjct: 169 EALKGKTQIVGDDLTVTNTERIKMAIEKKACNSLLLKINQIGTISEAIASSKLCMENGWS 228
Query: 183 VMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGPAAIYAGT 242
VM SHRSGETEDT+IADL V L +GQIKTGAPCR ER AK NQLLRIEEELG A +
Sbjct: 229 VMVSHRSGETEDTYIADLVVALGSGQIKTGAPCRGERTAKLNQLLRIEEELGAHAKFGFP 288
Query: 243 KF 244
+
Sbjct: 289 GW 290
>d2akza1 c.1.11.1 (A:140-433) Enolase {Human (Homo sapiens), gamma
isoform [TaxId: 9606]}
Length = 294
Score = 262 bits (671), Expect = 1e-88
Identities = 162/245 (66%), Positives = 189/245 (77%), Gaps = 5/245 (2%)
Query: 3 LQAVIKKKYGQDATNVGDEGGFAPNIQESYEGFELLKTAIAKGGYIGKIVIGMDVAASEF 62
L+ VIK KYG+DATNVGDEGGFAPNI E+ E EL+K AI K GY KIVIGMDVAASEF
Sbjct: 52 LKGVIKDKYGKDATNVGDEGGFAPNILENSEALELVKEAIDKAGYTEKIVIGMDVAASEF 111
Query: 63 YDSKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHHAELT 122
Y D D S+ ++GD L +Y+ F+ D+P+VSIEDPFDQDDW ++ T
Sbjct: 112 YRDGKYDLDFKSP---TDPSRYITGDQLGALYQDFVRDYPVVSIEDPFDQDDWAAWSKFT 168
Query: 123 GKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAGWG 182
+G +QIVGDDL VTNPKR+E+A++EK CN LLLKVNQIGSVTE+I+A K+++ GWG
Sbjct: 169 ANVG--IQIVGDDLTVTNPKRIERAVEEKACNCLLLKVNQIGSVTEAIQACKLAQENGWG 226
Query: 183 VMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGPAAIYAGT 242
VM SHRSGETEDTFIADL VGL TGQIKTGAPCRSERLAKYNQL+RIEEELG A +AG
Sbjct: 227 VMVSHRSGETEDTFIADLVVGLCTGQIKTGAPCRSERLAKYNQLMRIEEELGDEARFAGH 286
Query: 243 KFRAP 247
FR P
Sbjct: 287 NFRNP 291
>d2fyma1 c.1.11.1 (A:140-431) Enolase {Escherichia coli [TaxId:
562]}
Length = 292
Score = 245 bits (626), Expect = 6e-82
Identities = 111/244 (45%), Positives = 152/244 (62%), Gaps = 11/244 (4%)
Query: 3 LQAVIKKKYGQDATNVGDEGGFAPNIQESYEGFELLKTAIAKGGY-IGK-IVIGMDVAAS 60
L V+K K T VGDEGG+APN+ + E ++ A+ GY +GK I + MD AAS
Sbjct: 53 LAKVLKAKGMN--TAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAAS 110
Query: 61 EFYDSKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHHAE 120
EFY +G++ + + + +PIVSIED D+ DW+ A
Sbjct: 111 EFYKDGKYVL-------AGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAY 163
Query: 121 LTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAG 180
T +G +Q+VGDDL VTN K +++ I++ N++L+K NQIGS+TE++ A+KM+K AG
Sbjct: 164 QTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAG 223
Query: 181 WGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGPAAIYA 240
+ + SHRSGETED IADL+VG A GQIKTG+ RS+R+AKYNQL+RIEE LG A Y
Sbjct: 224 YTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYN 283
Query: 241 GTKF 244
G K
Sbjct: 284 GRKE 287
>d1kkoa1 c.1.11.2 (A:161-411) beta-Methylaspartase {Citrobacter
amalonaticus [TaxId: 35703]}
Length = 251
Score = 161 bits (409), Expect = 8e-50
Identities = 37/231 (16%), Positives = 73/231 (31%), Gaps = 34/231 (14%)
Query: 15 ATNVGDEGGFAPNIQESYEGFELLKTAIAKGGYIGKIVIGMDVA-ASEFYDSKDKTYDLN 73
+G +G E L I + Y + +D++
Sbjct: 41 EEKLGFKGEKLR------EYVRWLSDRILSLRS----SPRYHPTLHIDVYGTIGLIFDMD 90
Query: 74 FKEENNDGSQKVSGDGLKNVYRSFISDHPIVSIEDPFD----QDDWEHHAELTGKI---G 126
+ + ++ + P+ IE P D D +T ++ G
Sbjct: 91 PVRCA---------EYIASLEKEAQ-GLPL-YIEGPVDAGNKPDQIRMLTAITKELTRLG 139
Query: 127 RHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAGWGVMAS 186
V+IV D+ T + + +C+ + +K +G + ++AV + G
Sbjct: 140 SGVKIVADEWCNT-YQDIVDFTDAGSCHMVQIKTPDLGGIHNIVDAVLYCNKHGMEAYQG 198
Query: 187 HRSGETEDTFIADLSVGLAT--GQI--KTGAPCRSERLAKYNQLLRIEEEL 233
ETE + + V LA ++ K G +N++ R L
Sbjct: 199 GTCNETEISARTCVHVALAARPMRMLIKPGMGFDEGLNIVFNEMNRTIALL 249
>d1kcza1 c.1.11.2 (A:161-413) beta-Methylaspartase {Clostridium
tetanomorphum [TaxId: 1553]}
Length = 253
Score = 159 bits (403), Expect = 8e-49
Identities = 38/243 (15%), Positives = 73/243 (30%), Gaps = 28/243 (11%)
Query: 5 AVIKKKYGQ--DATNVGDEGGFAPNIQESYEGFELLKTAIAKGGYIGKIVIGMDVAASEF 62
+I K+ A E ++ E + L+ I K +
Sbjct: 23 KMIIKEADVLPHALINNVEEKLGLKGEKLLEYVKWLRDRIIKLRVREDYAPIFHID---- 78
Query: 63 YDSKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHHAELT 122
Y D K D ++ + + IE P D +D + E
Sbjct: 79 ------VYGTIG--AAFDVDIKAMADYIQTLAE-AAKPFHL-RIEGPMDVEDRQKQMEAM 128
Query: 123 GKI-------GRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKM 175
+ G ++V D+ + V+ K + + +K +G V +A+
Sbjct: 129 RDLRAELDGRGVDAELVADEW-CNTVEDVKFFTDNKAGHMVQIKTPDLGGVNNIADAIMY 187
Query: 176 SKRAGWGVMASHRSGETEDT--FIADLSVGLATGQI--KTGAPCRSERLAKYNQLLRIEE 231
K G G ET + ++ + Q+ K G + N++ R+
Sbjct: 188 CKANGMGAYCGGTCNETNRSAEVTTNIGMACGARQVLAKPGMGVDEGMMIVKNEMNRVLA 247
Query: 232 ELG 234
+G
Sbjct: 248 LVG 250
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 317
Score = 34.3 bits (77), Expect = 0.011
Identities = 28/180 (15%), Positives = 55/180 (30%), Gaps = 3/180 (1%)
Query: 7 IKKKYGQDATNVGDEGGFAPNIQESYEGFELLKTAIAKGGYIGKIVIGMDVAASEFYDSK 66
K + + + + +A + + E E ++ A K I +I+ A + +
Sbjct: 107 RKFEEEVEKLGIEVDLLYASELYKRGEYSEEIRLAFEKRDKIMEILNKYREIAKQPPLPE 166
Query: 67 DKTYDLNFKEENNDGSQKVSGDGLK-NVYRSFISDHPIVSIEDPFDQDDWE-HHAELTGK 124
+ + + E+ ++ + DG Y+ V I + W
Sbjct: 167 NWWPAMVYCPEHRREAEIIEWDGGWKVKYKCPEGHEGWVDIRSGNVKLRWRVDWPMRWSH 226
Query: 125 IGRHVQIVGDDLLVTNPK-RVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMSKRAGWGV 183
G + G D LV K I ++ V + KMS G +
Sbjct: 227 FGVDFEPAGKDHLVAGSSYDTGKEIIKEVYGKEAPLSLMYEFVGIKGQKGKMSGSKGNVI 286
>d1jb0b_ f.29.1.1 (B:) Apoprotein a2, PsaB {Synechococcus elongatus
[TaxId: 32046]}
Length = 739
Score = 27.5 bits (61), Expect = 1.9
Identities = 6/32 (18%), Positives = 15/32 (46%)
Query: 4 QAVIKKKYGQDATNVGDEGGFAPNIQESYEGF 35
A+ ++G+ A + + G + + +Y G
Sbjct: 88 HAIWDPQFGKAAVDAFTQAGASNPVDIAYSGV 119
>d2a0ba_ a.24.10.1 (A:) Aerobic respiration control sensor protein,
ArcB {Escherichia coli [TaxId: 562]}
Length = 118
Score = 25.7 bits (56), Expect = 3.0
Identities = 13/93 (13%), Positives = 29/93 (31%), Gaps = 3/93 (3%)
Query: 85 VSGDGLKNVYRSFISDHP--IVSIEDPFDQDDWEHHAELTGKIGRHVQIVGDDLLVTNPK 142
V + + F P + +E D + E KI VG L +
Sbjct: 19 VGPKLITDGLAVFEKMMPGYVSVLESNLTAQDKKGIVEEGHKIKGAAGSVGLRHLQQLGQ 78
Query: 143 RVEKAIKEKTCNALLLKVNQIGS-VTESIEAVK 174
+++ + + + ++ +E +K
Sbjct: 79 QIQSPDLPAWEDNVGEWIEEMKEEWRHDVEVLK 111
>d3ct6a1 c.54.1.2 (A:1-123) PTS-dependent dihydroxyacetone kinase,
phosphotransferase subunit DhaM {Lactococcus lactis
[TaxId: 1358]}
Length = 123
Score = 24.7 bits (54), Expect = 6.4
Identities = 12/61 (19%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 119 AELTGKIGRHVQIVG-----DDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAV 173
+L ++ +++ + + + T+ RV AI+E + LL + +GS +++ V
Sbjct: 19 KKLIREVAKNISLTAIGGLENGEIGTSFDRVMNAIEENEADNLLTFFD-LGSARMNLDLV 77
Query: 174 K 174
Sbjct: 78 S 78
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.134 0.383
Gapped
Lambda K H
0.267 0.0522 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 918,698
Number of extensions: 41454
Number of successful extensions: 115
Number of sequences better than 10.0: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 14
Length of query: 251
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 168
Effective length of database: 1,268,006
Effective search space: 213025008
Effective search space used: 213025008
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.3 bits)