BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 040345
         (61 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q6DFT6|SPTSA_XENTR Serine palmitoyltransferase small subunit A OS=Xenopus tropicalis
          GN=sptssa PE=3 SV=1
          Length = 80

 Score = 29.6 bits (65), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 20/33 (60%)

Query: 14 YNVTFGLYMLDWWERYLFNILVVVLMWFIFYNG 46
          Y +   LYML+ WER +FN ++V ++    Y G
Sbjct: 29 YLLVTALYMLEPWERTIFNSMLVSIVGMALYTG 61


>sp|O42843|YFH5_SCHPO Uncharacterized membrane protein C23A1.05 OS=Schizosaccharomyces
          pombe (strain 972 / ATCC 24843) GN=SPAC23A1.05 PE=4
          SV=1
          Length = 101

 Score = 29.6 bits (65), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 11/39 (28%), Positives = 25/39 (64%)

Query: 2  RAMNWIQRKIHLYNVTFGLYMLDWWERYLFNILVVVLMW 40
            M+W++ + + Y VT G Y+  + E ++FN +V ++++
Sbjct: 20 EPMSWLRLQYYRYQVTAGTYLFTYKEAFVFNTVVFIIVF 58


>sp|Q6GPZ5|SPSAB_XENLA Serine palmitoyltransferase small subunit A-B OS=Xenopus laevis
          GN=sptssa-b PE=3 SV=1
          Length = 80

 Score = 29.3 bits (64), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 25/45 (55%)

Query: 2  RAMNWIQRKIHLYNVTFGLYMLDWWERYLFNILVVVLMWFIFYNG 46
          RA N +    + Y +   LYML+ WER +FN ++V ++    Y G
Sbjct: 17 RAWNHVSWLYYQYLLVTALYMLEPWERTVFNSMLVSIVGMALYTG 61


>sp|Q66J44|SPSAA_XENLA Serine palmitoyltransferase small subunit A-A OS=Xenopus laevis
          GN=sptssa-a PE=3 SV=1
          Length = 80

 Score = 29.3 bits (64), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 20/33 (60%)

Query: 14 YNVTFGLYMLDWWERYLFNILVVVLMWFIFYNG 46
          Y +   LYML+ WER +FN ++V ++    Y G
Sbjct: 29 YLLVTALYMLEPWERTVFNSMLVSIVGMALYTG 61


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.337    0.146    0.524 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,106,504
Number of Sequences: 539616
Number of extensions: 704987
Number of successful extensions: 2708
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2698
Number of HSP's gapped (non-prelim): 11
length of query: 61
length of database: 191,569,459
effective HSP length: 34
effective length of query: 27
effective length of database: 173,222,515
effective search space: 4677007905
effective search space used: 4677007905
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 55 (25.8 bits)