Query 040345
Match_columns 61
No_of_seqs 90 out of 107
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 07:33:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040345.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040345hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11779 DUF3317: Protein of u 100.0 4.2E-30 9.2E-35 149.3 6.2 57 2-58 1-57 (58)
2 PF10582 Connexin_CCC: Gap jun 64.4 11 0.00024 22.4 3.1 23 20-42 34-56 (67)
3 PRK08382 putative monovalent c 54.1 13 0.00028 26.1 2.4 24 23-46 29-52 (201)
4 KOG3927 Na+/K+ ATPase, beta su 51.8 18 0.00039 27.0 3.0 52 5-56 20-75 (300)
5 PF06955 XET_C: Xyloglucan end 46.9 2.7 5.9E-05 23.3 -1.5 14 2-15 22-35 (51)
6 PF08546 ApbA_C: Ketopantoate 43.9 33 0.00072 20.7 2.9 19 24-42 5-23 (125)
7 PF14654 Epiglycanin_C: Mucin, 40.6 56 0.0012 21.3 3.7 10 23-32 15-24 (106)
8 PHA02078 hypothetical protein 38.2 27 0.00058 20.4 1.7 11 25-35 32-42 (54)
9 PHA02902 putative IMV membrane 38.0 62 0.0013 19.7 3.3 22 28-49 5-26 (70)
10 KOG4841 Dolichol-phosphate man 37.4 78 0.0017 20.3 3.9 36 13-48 23-59 (95)
11 PF10183 ESSS: ESSS subunit of 34.3 40 0.00087 21.0 2.2 28 24-53 57-84 (105)
12 PRK07597 secE preprotein trans 33.8 91 0.002 17.5 4.5 34 25-58 27-60 (64)
13 PHA02291 hypothetical protein 31.5 60 0.0013 21.8 2.8 20 27-46 4-23 (132)
14 PF12113 SVM_signal: SVM prote 31.3 36 0.00078 18.0 1.4 17 29-45 9-25 (33)
15 PF06682 DUF1183: Protein of u 29.5 61 0.0013 24.4 2.8 22 28-49 157-178 (318)
16 PF09889 DUF2116: Uncharacteri 27.5 1.1E+02 0.0025 17.7 3.2 18 29-46 40-57 (59)
17 PF11710 Git3: G protein-coupl 27.4 2E+02 0.0044 19.5 4.9 36 25-60 165-200 (201)
18 PRK10179 formate dehydrogenase 26.1 1.5E+02 0.0032 20.4 4.0 29 23-51 109-137 (217)
19 PF04418 DUF543: Domain of unk 25.2 1.4E+02 0.0031 17.9 3.4 20 24-43 20-39 (75)
20 PF07074 TRAP-gamma: Transloco 24.3 2.3E+02 0.0049 19.8 4.7 40 6-58 34-73 (170)
21 PF04835 Pox_A9: A9 protein co 23.3 1.3E+02 0.0028 17.5 2.8 17 28-44 28-44 (54)
22 PHA02681 ORF089 virion membran 22.8 92 0.002 19.9 2.3 16 33-48 10-25 (92)
23 TIGR00964 secE_bact preprotein 22.6 1.5E+02 0.0032 16.2 4.5 34 25-58 18-51 (55)
24 PF12129 Phtf-FEM1B_bdg: Male 22.5 1.2E+02 0.0025 21.1 3.0 23 3-32 6-28 (159)
25 PRK08476 F0F1 ATP synthase sub 21.8 2E+02 0.0043 18.4 3.8 23 28-51 9-31 (141)
26 PRK14487 cbb3-type cytochrome 20.3 1.8E+02 0.0039 21.0 3.7 33 23-55 2-34 (217)
No 1
>PF11779 DUF3317: Protein of unknown function (DUF3317); InterPro: IPR024512 Serine palmitoyltransferase (SPT) catalyzes the first committed step in sphingolipid biosynthesis. In mammals, two small subunits of serine palmitoyltransferase, ssSPTa and ssSPTb, substantially enhance the activity of SPT, conferring full enzyme activity upon it []. The 2 ssSPT isoforms share a conserved hydrophobic central domain, which is predicted to reside in the membrane. This entry represents the small subunits of serine palmitoyltransferase. It also includes a number of putative uncharacterised proteins from fungi and plants.
Probab=99.96 E-value=4.2e-30 Score=149.29 Aligned_cols=57 Identities=40% Similarity=0.826 Sum_probs=54.8
Q ss_pred hhhHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhh
Q 040345 2 RAMNWIQRKIHLYNVTFGLYMLDWWERYLFNILVVVLMWFIFYNGSKYVTDFFQRHL 58 (61)
Q Consensus 2 ~~~~w~~~k~yqYeVT~glYML~pwEk~iFns~v~~ll~l~~~~~~~YlP~~~~~~~ 58 (61)
|.+||++||+||||||||+||||||||++||++++++++++++|+++|+|+|++...
T Consensus 1 ~~~~~l~~~~~~Yevt~~lyMlepwEk~~fn~~~~~l~~l~~~~~~~ylP~h~~~~~ 57 (58)
T PF11779_consen 1 GFMNWLSRKYYQYEVTFGLYMLEPWEKFLFNSFLLLLLSLILYATYLYLPSHIRFII 57 (58)
T ss_pred CHHHHHHHHHHHHhheeeeeeccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 679999999999999999999999999999999999999999999999999998753
No 2
>PF10582 Connexin_CCC: Gap junction channel protein cysteine-rich domain; InterPro: IPR019570 The connexins are a family of integral membrane proteins that oligomerise to form intercellular channels that are clustered at gap junctions. These channels are specialised sites of cell-cell contact that allow the passage of ions, intracellular metabolites and messenger molecules (with molecular weight less than 1-2kDa) from the cytoplasm of one cell to its opposing neighbours. They are found in almost all vertebrate cell types, and somewhat similar proteins have been cloned from plant species. Invertebrates utilise a different family of molecules, innexins, that share a similar predicted secondary structure to the vertebrate connexins, but have no sequence identity to them []. Vertebrate gap junction channels are thought to participate in diverse biological functions. For instance, in the heart they permit the rapid cell-cell transfer of action potentials, ensuring coordinated contraction of the cardiomyocytes. They are also responsible for neurotransmission at specialised 'electrical' synapses. In non-excitable tissues, such as the liver, they may allow metabolic cooperation between cells. In the brain, glial cells are extensively-coupled by gap junctions; this allows waves of intracellular Ca2+ to propagate through nervous tissue, and may contribute to their ability to spatially-buffer local changes in extracellular K+ concentration []. The connexin protein family is encoded by at least 13 genes in rodents, with many homologues cloned from other species. They show overlapping tissue expression patterns, most tissues expressing more than one connexin type. Their conductances, permeability to different molecules, phosphorylation and voltage-dependence of their gating, have been found to vary. Possible communication diversity is increased further by the fact that gap junctions may be formed by the association of different connexin isoforms from apposing cells. However, in vitro studies have shown that not all possible combinations of connexins produce active channels [, ]. Hydropathy analysis predicts that all cloned connexins share a common transmembrane (TM) topology. Each connexin is thought to contain 4 TM domains, with two extracellular and three cytoplasmic regions. This model has been validated for several of the family members by in vitro biochemical analysis. Both N- and C-termini are thought to face the cytoplasm, and the third TM domain has an amphipathic character, suggesting that it contributes to the lining of the formed-channel. Amino acid sequence identity between the isoforms is ~50-80%, with the TM domains being well conserved. Both extracellular loops contain characteristically conserved cysteine residues, which likely form intramolecular disulphide bonds. By contrast, the single putative intracellular loop (between TM domains 2 and 3) and the cytoplasmic C terminus are highly variable among the family members. Six connexins are thought to associate to form a hemi-channel, or connexon. Two connexons then interact (likely via the extracellular loops of their connexins) to form the complete gap junction channel. NH2-*** *** *************-COOH ** ** ** ** ** ** ** ** Cytoplasmic ---**----**-----**----**---------------- ** ** ** ** Membrane ** ** ** ** ---**----**-----**----**---------------- ** ** ** ** Extracellular ** ** ** ** ** ** Two sets of nomenclature have been used to identify the connexins. The first, and most commonly used, classifies the connexin molecules according to molecular weight, such as connexin43 (abbreviated to Cx43), indicating a connexin of molecular weight close to 43kDa. However, studies have revealed cases where clear functional homologues exist across species that have quite different molecular masses; therefore, an alternative nomenclature was proposed based on evolutionary considerations, which divides the family into two major subclasses, alpha and beta, each with a number of members []. Due to their ubiquity and overlapping tissue distributions, it has proved difficult to elucidate the functions of individual connexin isoforms. To circumvent this problem, particular connexin-encoding genes have been subjected to targeted-disruption in mice, and the phenotype of the resulting animals investigated. Around half the connexin isoforms have been investigated in this manner []. Further insight into the functional roles of connexins has come from the discovery that a number of human diseases are caused by mutations in connexin genes. For instance, mutations in Cx32 give rise to a form of inherited peripheral neuropathy called X-linked dominant Charcot-Marie-Tooth disease []. Similarly, mutations in Cx26 are responsible for both autosomal recessive and dominant forms of nonsyndromic deafness, a disorder characterised by hearing loss, with no apparent effects on other organ systems. This entry represents the cysteine rich domain of the connexins.; PDB: 2ZW3_F.
Probab=64.38 E-value=11 Score=22.40 Aligned_cols=23 Identities=13% Similarity=0.161 Sum_probs=16.4
Q ss_pred hhccchHHHHHHHHHHHHHHHHH
Q 040345 20 LYMLDWWERYLFNILVVVLMWFI 42 (61)
Q Consensus 20 lYML~pwEk~iFns~v~~ll~l~ 42 (61)
.|+=.|+||.+|-.+.+.+-+..
T Consensus 34 CfVSRPtEKtIfl~fM~~~s~vs 56 (67)
T PF10582_consen 34 CFVSRPTEKTIFLIFMFAVSCVS 56 (67)
T ss_dssp EE-SSHHHHHHHHHHHHHHHHHH
T ss_pred EeCCCCchhhhHHHHHHHHHHHH
Confidence 35567999999988877765543
No 3
>PRK08382 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=54.08 E-value=13 Score=26.10 Aligned_cols=24 Identities=29% Similarity=0.797 Sum_probs=19.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHh
Q 040345 23 LDWWERYLFNILVVVLMWFIFYNG 46 (61)
Q Consensus 23 L~pwEk~iFns~v~~ll~l~~~~~ 46 (61)
+.|||++++-++++.++|++.-+.
T Consensus 29 ~~~~~~~~~~~llLf~~WllLsg~ 52 (201)
T PRK08382 29 LPPWERFVLTWLILLAFWVIISGD 52 (201)
T ss_pred CCcchHHHHHHHHHHHHHHHHhCC
Confidence 568999999999999999876553
No 4
>KOG3927 consensus Na+/K+ ATPase, beta subunit [Inorganic ion transport and metabolism]
Probab=51.81 E-value=18 Score=27.04 Aligned_cols=52 Identities=19% Similarity=0.272 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHhhhhc----cchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHh
Q 040345 5 NWIQRKIHLYNVTFGLYM----LDWWERYLFNILVVVLMWFIFYNGSKYVTDFFQR 56 (61)
Q Consensus 5 ~w~~~k~yqYeVT~glYM----L~pwEk~iFns~v~~ll~l~~~~~~~YlP~~~~~ 56 (61)
++-.+|.++||-..|-+| -+|++-.+|++++..+++.++......+=+++.+
T Consensus 20 ~~~~~~~~~~n~~~~~~~GRT~~sW~~IllfYivFY~~la~lf~~~~~~~~~tidp 75 (300)
T KOG3927|consen 20 KPEEWKEFLYNPETGTFLGRTGSSWAKILLFYIVFYGVLAALFAGCMWFMLQTIDP 75 (300)
T ss_pred cchhhHHheeCcccCeEECcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 466778899998887776 4577777999999999988877766555555443
No 5
>PF06955 XET_C: Xyloglucan endo-transglycosylase (XET) C-terminus; InterPro: IPR010713 This entry represents the C terminus (approximately 60 residues) of plant xyloglucan endo-transglycosylase (XET). Xyloglucan is the predominant hemicellulose in the cell walls of most dicotyledons. With cellulose, it forms a network that strengthens the cell wall. XET catalyses the splitting of xyloglucan chains and the linking of the newly generated reducing end to the non-reducing end of another xyloglucan chain, thereby loosening the cell wall []. ; GO: 0016762 xyloglucan:xyloglucosyl transferase activity, 0006073 cellular glucan metabolic process, 0005618 cell wall, 0048046 apoplast; PDB: 1UMZ_A 1UN1_B 2VH9_B 2UWC_A 2UWB_B 2UWA_C.
Probab=46.88 E-value=2.7 Score=23.33 Aligned_cols=14 Identities=36% Similarity=1.051 Sum_probs=10.8
Q ss_pred hhhHHHHHHHHHHH
Q 040345 2 RAMNWIQRKIHLYN 15 (61)
Q Consensus 2 ~~~~w~~~k~yqYe 15 (61)
++|+|+++++.-|+
T Consensus 22 ~~m~wvr~~ymiYd 35 (51)
T PF06955_consen 22 RQMRWVRRNYMIYD 35 (51)
T ss_dssp HHHHHHHHHCEEEE
T ss_pred HHHHHHHHcCeEec
Confidence 57999999986553
No 6
>PF08546 ApbA_C: Ketopantoate reductase PanE/ApbA C terminal; InterPro: IPR013752 This is the C-terminal domain of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, 1.1.1.169 from EC. The reaction catalysed by this enzyme is: (R)-pantoate + NADP(+) = 2-dehydropantoate + NADPH. AbpA catalyses the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway []. ApbA and PanE are allelic []. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway []. ; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 1YJQ_A 1KS9_A 2OFP_A 1YON_A 2EW2_B 3EGO_B 3HN2_D 3GHY_B 3G17_E 3HWR_B ....
Probab=43.89 E-value=33 Score=20.66 Aligned_cols=19 Identities=26% Similarity=0.588 Sum_probs=15.0
Q ss_pred chHHHHHHHHHHHHHHHHH
Q 040345 24 DWWERYLFNILVVVLMWFI 42 (61)
Q Consensus 24 ~pwEk~iFns~v~~ll~l~ 42 (61)
+-|+|.++|+.+=.+.++.
T Consensus 5 ~~w~Kl~~n~~~n~l~al~ 23 (125)
T PF08546_consen 5 ERWEKLIFNAAINPLTALT 23 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4699999998777766664
No 7
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=40.62 E-value=56 Score=21.34 Aligned_cols=10 Identities=40% Similarity=0.850 Sum_probs=7.8
Q ss_pred cchHHHHHHH
Q 040345 23 LDWWERYLFN 32 (61)
Q Consensus 23 L~pwEk~iFn 32 (61)
|.|||-+++-
T Consensus 15 L~PWeIfLIt 24 (106)
T PF14654_consen 15 LKPWEIFLIT 24 (106)
T ss_pred ccchHHHHHH
Confidence 6899987664
No 8
>PHA02078 hypothetical protein
Probab=38.19 E-value=27 Score=20.39 Aligned_cols=11 Identities=36% Similarity=0.830 Sum_probs=9.2
Q ss_pred hHHHHHHHHHH
Q 040345 25 WWERYLFNILV 35 (61)
Q Consensus 25 pwEk~iFns~v 35 (61)
||||.|.-+++
T Consensus 32 P~ER~Iylsll 42 (54)
T PHA02078 32 PWEREIYAALL 42 (54)
T ss_pred HHHHHHHHHHH
Confidence 99999887765
No 9
>PHA02902 putative IMV membrane protein; Provisional
Probab=37.96 E-value=62 Score=19.72 Aligned_cols=22 Identities=14% Similarity=0.485 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 040345 28 RYLFNILVVVLMWFIFYNGSKY 49 (61)
Q Consensus 28 k~iFns~v~~ll~l~~~~~~~Y 49 (61)
-++.-.+..+++++++|++|+=
T Consensus 5 tfvi~~v~v~Ivclliya~YrR 26 (70)
T PHA02902 5 TFVILAVIVIIFCLLIYAAYKR 26 (70)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666777888899998863
No 10
>KOG4841 consensus Dolichol-phosphate mannosyltransferase, subunit 3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=37.38 E-value=78 Score=20.31 Aligned_cols=36 Identities=19% Similarity=0.016 Sum_probs=28.4
Q ss_pred HHHHHhhhhccc-hHHHHHHHHHHHHHHHHHHHHhhh
Q 040345 13 LYNVTFGLYMLD-WWERYLFNILVVVLMWFIFYNGSK 48 (61)
Q Consensus 13 qYeVT~glYML~-pwEk~iFns~v~~ll~l~~~~~~~ 48 (61)
.+.||+++.=|+ ||.-..-+.=.+.++++-||+...
T Consensus 23 ~~~vt~~l~~Leeplscl~~y~P~~~~l~~G~Ya~~t 59 (95)
T KOG4841|consen 23 WVAVTTGLLGLEEPLSCLEVYWPLYLLLSAGCYALGT 59 (95)
T ss_pred HHHHHHHHccCcccHHHHHhhhHHHHHHHHHhHhhhh
Confidence 578887766665 998888888889999998888653
No 11
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=34.27 E-value=40 Score=21.03 Aligned_cols=28 Identities=21% Similarity=0.120 Sum_probs=18.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 040345 24 DWWERYLFNILVVVLMWFIFYNGSKYVTDF 53 (61)
Q Consensus 24 ~pwEk~iFns~v~~ll~l~~~~~~~YlP~~ 53 (61)
+-||...|-++.+.++.+.+ .+.|.||+
T Consensus 57 e~we~~~f~~~~~~~v~~~~--~~~y~PD~ 84 (105)
T PF10183_consen 57 EGWELPFFFGFSGSLVFGGV--FLAYKPDT 84 (105)
T ss_pred hhhHHHHHHHHHHHHHHHHH--HHHcCCCC
Confidence 46888888777666665544 34566775
No 12
>PRK07597 secE preprotein translocase subunit SecE; Reviewed
Probab=33.77 E-value=91 Score=17.48 Aligned_cols=34 Identities=24% Similarity=0.325 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhh
Q 040345 25 WWERYLFNILVVVLMWFIFYNGSKYVTDFFQRHL 58 (61)
Q Consensus 25 pwEk~iFns~v~~ll~l~~~~~~~YlP~~~~~~~ 58 (61)
|.-|.++++.+.++...++.+.+.++=|.+-..+
T Consensus 27 Ps~~e~~~~t~~Vi~~~~~~~~~i~~vD~~~~~~ 60 (64)
T PRK07597 27 PTRKELVRSTIVVLVFVAFFALFFYLVDLLFSKL 60 (64)
T ss_pred cCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677888888888888899999999988776554
No 13
>PHA02291 hypothetical protein
Probab=31.47 E-value=60 Score=21.76 Aligned_cols=20 Identities=30% Similarity=0.454 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 040345 27 ERYLFNILVVVLMWFIFYNG 46 (61)
Q Consensus 27 Ek~iFns~v~~ll~l~~~~~ 46 (61)
.+.+|+.+++++++..+++-
T Consensus 4 K~~iFYiL~~~VL~~si~sY 23 (132)
T PHA02291 4 KASIFYILVVIVLAFSISSY 23 (132)
T ss_pred chhhHHHHHHHHHHHHHHHH
Confidence 36789999999988877653
No 14
>PF12113 SVM_signal: SVM protein signal sequence; InterPro: IPR021970 This domain is presumed to be a signal peptide sequence found in Sequence-variable mosaic (SVM) proteins []. It is found in phytoplasmas. This presumed signal sequence is about 30 amino acids in length.
Probab=31.32 E-value=36 Score=18.02 Aligned_cols=17 Identities=18% Similarity=0.532 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 040345 29 YLFNILVVVLMWFIFYN 45 (61)
Q Consensus 29 ~iFns~v~~ll~l~~~~ 45 (61)
.++|.++|+++++.+++
T Consensus 9 ~ii~i~Lf~~LGL~fI~ 25 (33)
T PF12113_consen 9 KIINIFLFIFLGLFFIT 25 (33)
T ss_pred hhhhhHHHHHHHHHhee
Confidence 46788999999988764
No 15
>PF06682 DUF1183: Protein of unknown function (DUF1183); InterPro: IPR009567 This family consists of several eukaryotic proteins of around 360 residues in length. The function of this family is unknown.
Probab=29.50 E-value=61 Score=24.37 Aligned_cols=22 Identities=27% Similarity=0.476 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 040345 28 RYLFNILVVVLMWFIFYNGSKY 49 (61)
Q Consensus 28 k~iFns~v~~ll~l~~~~~~~Y 49 (61)
-.+|..++++++++++|.+++-
T Consensus 157 ~~lf~ii~l~vla~ivY~~~~~ 178 (318)
T PF06682_consen 157 SWLFWIIFLLVLAFIVYSLFLS 178 (318)
T ss_pred chhhhHHHHHHHHHHHHHHHhc
Confidence 3678889999999999988764
No 16
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=27.55 E-value=1.1e+02 Score=17.66 Aligned_cols=18 Identities=11% Similarity=0.373 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 040345 29 YLFNILVVVLMWFIFYNG 46 (61)
Q Consensus 29 ~iFns~v~~ll~l~~~~~ 46 (61)
.++..++++++++.++..
T Consensus 40 ~i~~~~~i~~l~v~~~~~ 57 (59)
T PF09889_consen 40 YIFFGIFILFLAVWIFMT 57 (59)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555665555555443
No 17
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.
Probab=27.39 E-value=2e+02 Score=19.48 Aligned_cols=36 Identities=11% Similarity=0.181 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhhc
Q 040345 25 WWERYLFNILVVVLMWFIFYNGSKYVTDFFQRHLTV 60 (61)
Q Consensus 25 pwEk~iFns~v~~ll~l~~~~~~~YlP~~~~~~~~~ 60 (61)
+|||...+=+-.-+..+.....|..+=-|++|+.+.
T Consensus 165 ~~~Rl~l~y~~~~~~~~~~i~iY~~if~~lrr~~~~ 200 (201)
T PF11710_consen 165 EWYRLWLHYIWRFIIIFAIIIIYIAIFFYLRRRIRR 200 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 578888887776677777777777777788888764
No 18
>PRK10179 formate dehydrogenase-N subunit gamma; Provisional
Probab=26.06 E-value=1.5e+02 Score=20.39 Aligned_cols=29 Identities=3% Similarity=0.099 Sum_probs=21.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 040345 23 LDWWERYLFNILVVVLMWFIFYNGSKYVT 51 (61)
Q Consensus 23 L~pwEk~iFns~v~~ll~l~~~~~~~YlP 51 (61)
..|.||..+-.+.+..+.+++.+...|.|
T Consensus 109 ~N~~QKl~y~~i~~~~~~~i~TGl~l~~~ 137 (217)
T PRK10179 109 YNAGQKMMFWSIMSMIFVLLVTGVIIWRP 137 (217)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56889998888877777777666666655
No 19
>PF04418 DUF543: Domain of unknown function (DUF543); InterPro: IPR007512 This family of short eukaryotic proteins has no known function. Most of the members of this family are only 80 amino acid residues long. However the Arabidopsis homologue is over 300 residues long. These proteins contain a conserved N-terminal cysteine and a conserved motif GXGXGXG in the carboxy terminal half that may be functionally important.
Probab=25.20 E-value=1.4e+02 Score=17.92 Aligned_cols=20 Identities=30% Similarity=0.446 Sum_probs=16.2
Q ss_pred chHHHHHHHHHHHHHHHHHH
Q 040345 24 DWWERYLFNILVVVLMWFIF 43 (61)
Q Consensus 24 ~pwEk~iFns~v~~ll~l~~ 43 (61)
+-|+||+-|+++=...++.+
T Consensus 20 ~kwD~cl~~~l~k~~~G~~~ 39 (75)
T PF04418_consen 20 EKWDRCLSDTLVKTGLGFGI 39 (75)
T ss_pred HHHHHHHHHHHHHHhhhhhH
Confidence 46999999999977777654
No 20
>PF07074 TRAP-gamma: Translocon-associated protein, gamma subunit (TRAP-gamma); InterPro: IPR009779 This family consists of several eukaryotic translocon-associated protein, gamma subunit (TRAP-gamma) sequences. The translocation site (translocon), at which nascent polypeptides pass through the endoplasmic reticulum membrane, contains a component previously called 'signal sequence receptor' that is now renamed as 'translocon-associated protein' (TRAP). The TRAP complex is comprised of four membrane proteins alpha, beta, gamma and delta, which are present in a stoichiometric relation, and are genuine neighbours in intact microsomes. The gamma subunit is predicted to span the membrane four times [].; GO: 0006613 cotranslational protein targeting to membrane, 0005784 Sec61 translocon complex, 0030176 integral to endoplasmic reticulum membrane
Probab=24.28 E-value=2.3e+02 Score=19.83 Aligned_cols=40 Identities=15% Similarity=0.299 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhh
Q 040345 6 WIQRKIHLYNVTFGLYMLDWWERYLFNILVVVLMWFIFYNGSKYVTDFFQRHL 58 (61)
Q Consensus 6 w~~~k~yqYeVT~glYML~pwEk~iFns~v~~ll~l~~~~~~~YlP~~~~~~~ 58 (61)
|+.+.++|.++. + |.+++++.+.+....-.+.-+-+++.|
T Consensus 34 ~LF~~Ih~m~~~---------~----~~I~f~i~t~~sayll~fAYkNvk~~l 73 (170)
T PF07074_consen 34 WLFWRIHQMDLY---------D----SLIVFVIVTLVSAYLLAFAYKNVKFVL 73 (170)
T ss_pred HHHHHHHhcccc---------h----hhHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 666666665554 3 445555555555444444444444433
No 21
>PF04835 Pox_A9: A9 protein conserved region; InterPro: IPR006920 This entry represents a family of Chordopoxvirus A9 proteins. Chordopoxvirus belongs to the family Poxviridae and is the cause of vertebrate infections [].
Probab=23.33 E-value=1.3e+02 Score=17.55 Aligned_cols=17 Identities=0% Similarity=0.299 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 040345 28 RYLFNILVVVLMWFIFY 44 (61)
Q Consensus 28 k~iFns~v~~ll~l~~~ 44 (61)
|.+++.+++++++...+
T Consensus 28 k~vismimylilGi~L~ 44 (54)
T PF04835_consen 28 KSVISMIMYLILGIALI 44 (54)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 77888888888888763
No 22
>PHA02681 ORF089 virion membrane protein; Provisional
Probab=22.84 E-value=92 Score=19.87 Aligned_cols=16 Identities=13% Similarity=0.384 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHhhh
Q 040345 33 ILVVVLMWFIFYNGSK 48 (61)
Q Consensus 33 s~v~~ll~l~~~~~~~ 48 (61)
.++..++++++|+.|+
T Consensus 10 ~V~V~IVclliya~YR 25 (92)
T PHA02681 10 VIVISIVCYIVIMMYR 25 (92)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5677788899999886
No 23
>TIGR00964 secE_bact preprotein translocase, SecE subunit, bacterial. This model represents exclusively the bacterial (and some organellar) SecE protein. SecE is part of the core heterotrimer, SecYEG, of the Sec preprotein translocase system. Other components are the ATPase SecA, a cytosolic chaperone SecB, and an accessory complex of SecDF and YajC.
Probab=22.64 E-value=1.5e+02 Score=16.23 Aligned_cols=34 Identities=21% Similarity=0.335 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhh
Q 040345 25 WWERYLFNILVVVLMWFIFYNGSKYVTDFFQRHL 58 (61)
Q Consensus 25 pwEk~iFns~v~~ll~l~~~~~~~YlP~~~~~~~ 58 (61)
|--|.++++.+.++...++.+.+.++-|.+-+.+
T Consensus 18 Pt~~e~~~~t~~Vi~~~~~~~~~~~~~D~~~~~~ 51 (55)
T TIGR00964 18 PSRKELITYTIVVIVFVIFFSLFLFGVDYVFGKL 51 (55)
T ss_pred cCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556778888888888889999999888776554
No 24
>PF12129 Phtf-FEM1B_bdg: Male germ-cell putative homeodomain transcription factor; InterPro: IPR021980 This domain is found in bacteria and eukaryotes, and is typically between 101 and 140 amino acids in length. Phtf proteins do not display any sequence similarity to known or predicted proteins, but their conservation among species suggests an essential function. The 84 kDa Phtf1 protein is an integral membrane protein, anchored to a cell membrane by six to eight trans-membrane domains, that is associated with a domain of the endoplasmic reticulum (ER) juxtaposed to the Golgi apparatus. It is present during meiosis and spermiogenesis, and, by the end of spermiogenesis, is released from the mature spermatozoon within the residual bodies []. Phtf1 enhances the binding of FEM1B -feminisation homologue 1B - to cell membranes. Fem-1 was initially identified in the signaling pathway for sex determination, as well as being implicated in apoptosis, but its biochemical role is still unclear, and neither FEM1B nor PHTF1 is directly implicated in apoptosis in spermatogenesis. It is the ANK domain of FEM1B that is necessary for the interaction with the N-terminal region of Phtf1 [].
Probab=22.47 E-value=1.2e+02 Score=21.06 Aligned_cols=23 Identities=35% Similarity=0.767 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHHHHhhhhccchHHHHHHH
Q 040345 3 AMNWIQRKIHLYNVTFGLYMLDWWERYLFN 32 (61)
Q Consensus 3 ~~~w~~~k~yqYeVT~glYML~pwEk~iFn 32 (61)
...|.|.|+=.|+- .-|||.+--
T Consensus 6 ~i~wyQkKig~YD~-------q~WEksveq 28 (159)
T PF12129_consen 6 AIAWYQKKIGAYDQ-------QIWEKSVEQ 28 (159)
T ss_pred HHHHHHHHHhhhHH-------HHHHHHHHH
Confidence 46788888655554 459998754
No 25
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=21.76 E-value=2e+02 Score=18.43 Aligned_cols=23 Identities=22% Similarity=0.360 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhH
Q 040345 28 RYLFNILVVVLMWFIFYNGSKYVT 51 (61)
Q Consensus 28 k~iFns~v~~ll~l~~~~~~~YlP 51 (61)
-+++..+.|+++ +++.+-+.|=|
T Consensus 9 ~~~~qli~Flil-~~~l~kfl~kP 31 (141)
T PRK08476 9 LMLATFVVFLLL-IVILNSWLYKP 31 (141)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHH
Confidence 456666666666 44445555655
No 26
>PRK14487 cbb3-type cytochrome c oxidase subunit II; Provisional
Probab=20.26 E-value=1.8e+02 Score=20.97 Aligned_cols=33 Identities=21% Similarity=0.110 Sum_probs=24.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 040345 23 LDWWERYLFNILVVVLMWFIFYNGSKYVTDFFQ 55 (61)
Q Consensus 23 L~pwEk~iFns~v~~ll~l~~~~~~~YlP~~~~ 55 (61)
-+++||..+-.++++++++++=....-+|.+.+
T Consensus 2 h~~~e~~~~~~~v~~~~~v~~g~~v~ivp~~~~ 34 (217)
T PRK14487 2 HEILEKNPGLLAVLTLLVVSIGGLVEIVPLFFQ 34 (217)
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 468899888888888877776666666676654
Done!