Query 040345
Match_columns 61
No_of_seqs 90 out of 107
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 11:57:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040345.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040345hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kix_A BM2 protein; channel, t 41.0 36 0.0012 17.2 3.4 25 22-46 1-25 (33)
2 2zw3_A GAP junction beta-2 pro 30.3 44 0.0015 22.9 3.1 24 20-43 180-203 (226)
3 2zzd_B Thiocyanate hydrolase s 23.1 50 0.0017 21.6 2.2 13 24-36 66-78 (157)
4 1umz_A Xyloglucan endotransgly 21.5 11 0.00037 26.2 -1.3 14 2-15 244-257 (278)
5 3arc_I Photosystem II reaction 21.3 1E+02 0.0034 16.1 3.1 18 28-45 5-22 (38)
6 2k1e_A Water soluble analogue 15.7 1.7E+02 0.0059 16.4 4.4 27 25-51 3-29 (103)
7 1ugp_B NitrIle hydratase beta 15.5 87 0.003 21.4 2.1 14 23-36 26-39 (226)
8 4fm4_B NitrIle hydratase beta 14.6 95 0.0033 20.8 2.1 12 24-35 27-38 (206)
9 3m73_A Tellurite resistance pr 13.7 3E+02 0.01 18.6 4.5 30 30-59 46-75 (314)
10 1vry_A Glycine receptor alpha- 13.0 2.2E+02 0.0075 16.3 3.3 23 28-50 37-59 (76)
No 1
>2kix_A BM2 protein; channel, transport protein; NMR {Influenza b virus}
Probab=41.04 E-value=36 Score=17.17 Aligned_cols=25 Identities=16% Similarity=0.300 Sum_probs=17.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHh
Q 040345 22 MLDWWERYLFNILVVVLMWFIFYNG 46 (61)
Q Consensus 22 ML~pwEk~iFns~v~~ll~l~~~~~ 46 (61)
||||.+-.-..|+++.-+-+..++.
T Consensus 1 mlep~qilsi~sfilsalhf~awti 25 (33)
T 2kix_A 1 MLEPFQILSISSFILSALHFIAWTI 25 (33)
T ss_dssp CCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHH
Confidence 7899887777777776666555543
No 2
>2zw3_A GAP junction beta-2 protein; ION channel, alpha helical membrane channel, two double layered lipid spanning, cellular adhesion, cell junction; 3.50A {Homo sapiens} PDB: 3iz1_A 3iz2_A
Probab=30.30 E-value=44 Score=22.88 Aligned_cols=24 Identities=8% Similarity=0.213 Sum_probs=18.2
Q ss_pred hhccchHHHHHHHHHHHHHHHHHH
Q 040345 20 LYMLDWWERYLFNILVVVLMWFIF 43 (61)
Q Consensus 20 lYML~pwEk~iFns~v~~ll~l~~ 43 (61)
.|+=.|+||.+|-.+++.+.++.+
T Consensus 180 CfvSRPtEKtifl~fM~~vs~lsi 203 (226)
T 2zw3_A 180 CFVSRPTEKTVFTVFMIAVSGICI 203 (226)
T ss_dssp EECSSHHHHHHHHHHHHHHHHHHH
T ss_pred eECCCchhHHHHHHHHHHHHHHHH
Confidence 455679999999888877765544
No 3
>2zzd_B Thiocyanate hydrolase subunit beta; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dd4_B 2dxb_B 2dd5_B* 2dxc_B*
Probab=23.06 E-value=50 Score=21.60 Aligned_cols=13 Identities=23% Similarity=0.424 Sum_probs=10.7
Q ss_pred chHHHHHHHHHHH
Q 040345 24 DWWERYLFNILVV 36 (61)
Q Consensus 24 ~pwEk~iFns~v~ 36 (61)
+|||+.+|-..+-
T Consensus 66 epWE~rafAl~va 78 (157)
T 2zzd_B 66 EIWELNTFATCEC 78 (157)
T ss_dssp BHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHH
Confidence 7999999987553
No 4
>1umz_A Xyloglucan endotransglycosylase; glycoside hydrolase, XET, XTH, XEH, transglycosylation, transferase, glycosyltransferase; HET: NAG BMA BGC GAL; 1.8A {Populus tremula} SCOP: b.29.1.2 PDB: 1un1_A*
Probab=21.55 E-value=11 Score=26.23 Aligned_cols=14 Identities=36% Similarity=1.063 Sum_probs=11.6
Q ss_pred hhhHHHHHHHHHHH
Q 040345 2 RAMNWIQRKIHLYN 15 (61)
Q Consensus 2 ~~~~w~~~k~yqYe 15 (61)
++|+|+|+|+..|+
T Consensus 244 ~~~~~~~~~~~~y~ 257 (278)
T 1umz_A 244 RRLSWVRQKYTIYN 257 (278)
T ss_dssp HHHHHHHHHTEEEE
T ss_pred HHHHHHHHCCeEEe
Confidence 57999999987665
No 5
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=21.31 E-value=1e+02 Score=16.06 Aligned_cols=18 Identities=11% Similarity=0.375 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 040345 28 RYLFNILVVVLMWFIFYN 45 (61)
Q Consensus 28 k~iFns~v~~ll~l~~~~ 45 (61)
|.+.+++++.++++.+++
T Consensus 5 Ki~Vy~vV~ffvsLFiFG 22 (38)
T 3arc_I 5 KITVYIVVTFFVLLFVFG 22 (38)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred EeeehhHHHHHHHHHHcc
Confidence 556677777777766654
No 6
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=15.66 E-value=1.7e+02 Score=16.42 Aligned_cols=27 Identities=7% Similarity=-0.296 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 040345 25 WWERYLFNILVVVLMWFIFYNGSKYVT 51 (61)
Q Consensus 25 pwEk~iFns~v~~ll~l~~~~~~~YlP 51 (61)
.+||.+.-.++.+++.+++.+...+.-
T Consensus 3 ~~~r~~l~~~~~~~~~~~~~a~~~~~~ 29 (103)
T 2k1e_A 3 DHEREAQKAEEELQKVLEEASKKAVEA 29 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 578988877777666666655555543
No 7
>1ugp_B NitrIle hydratase beta subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: b.34.4.4 PDB: 1ire_B 1ugq_B 1ugr_B 1ugs_B
Probab=15.47 E-value=87 Score=21.36 Aligned_cols=14 Identities=21% Similarity=0.499 Sum_probs=11.0
Q ss_pred cchHHHHHHHHHHH
Q 040345 23 LDWWERYLFNILVV 36 (61)
Q Consensus 23 L~pwEk~iFns~v~ 36 (61)
-+|||+..|-+.+.
T Consensus 26 ~epWE~rafAl~~a 39 (226)
T 1ugp_B 26 RAEWEKVAFAMFPA 39 (226)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHH
Confidence 46999999987553
No 8
>4fm4_B NitrIle hydratase beta subunit; iron type hydratase, hydrolysis, sulfinic acid, lyase; 2.38A {Comamonas testosteroni}
Probab=14.60 E-value=95 Score=20.79 Aligned_cols=12 Identities=25% Similarity=0.283 Sum_probs=9.4
Q ss_pred chHHHHHHHHHH
Q 040345 24 DWWERYLFNILV 35 (61)
Q Consensus 24 ~pwEk~iFns~v 35 (61)
+|||+.+|-..+
T Consensus 27 ~~WE~rafAl~~ 38 (206)
T 4fm4_B 27 EEWEVKMNAISG 38 (206)
T ss_dssp SHHHHHHHHHHH
T ss_pred chHHHHHHHHHH
Confidence 699999996543
No 9
>3m73_A Tellurite resistance protein TEHA homolog; anion channel, alpha helical integral membrane protein, STRU genomics, PSI-2; HET: BOG; 1.15A {Haemophilus influenzae} PDB: 3m75_A* 3m74_A* 3m77_A* 3m71_A* 3m7b_A* 3m7c_A* 3m7e_A* 3m7l_A* 3m78_A* 3m76_A* 3m72_A*
Probab=13.66 E-value=3e+02 Score=18.58 Aligned_cols=30 Identities=10% Similarity=0.193 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHhhhh
Q 040345 30 LFNILVVVLMWFIFYNGSKYVTDFFQRHLT 59 (61)
Q Consensus 30 iFns~v~~ll~l~~~~~~~YlP~~~~~~~~ 59 (61)
++|.++++++......=+..-|+.+++.++
T Consensus 46 ~l~~~l~~~l~~~~~~r~~~~p~~~~~~l~ 75 (314)
T 3m73_A 46 IVASAVWILFILMYAYKLRYYFEEVRAEYH 75 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 456677677666666667777888887765
No 10
>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third transmembrane domain, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=13.02 E-value=2.2e+02 Score=16.26 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Q 040345 28 RYLFNILVVVLMWFIFYNGSKYV 50 (61)
Q Consensus 28 k~iFns~v~~ll~l~~~~~~~Yl 50 (61)
-.+.-+++|++.+++=|+...|+
T Consensus 37 vw~~~C~~FVF~aLlEya~V~y~ 59 (76)
T 1vry_A 37 IWLAVCLLFVFSALLEYAAVNFV 59 (76)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677899999999999988775
Done!