Query 040345
Match_columns 61
No_of_seqs 90 out of 107
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 11:57:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040345.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040345hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ks9a1 a.100.1.7 (A:168-291) 42.8 9.6 0.0007 21.0 2.7 17 25-41 6-22 (124)
2 d1v54c_ f.25.1.1 (C:) Mitochon 21.1 42 0.0031 21.1 3.3 32 19-50 118-149 (259)
3 d1ugpb_ b.34.4.4 (B:) Cobalt-c 15.5 41 0.003 21.3 2.1 12 24-35 27-38 (226)
4 d2axti1 f.23.37.1 (I:1-35) Pho 15.4 66 0.0048 15.2 3.1 18 28-45 5-22 (35)
5 d2h8pc1 f.14.1.1 (C:22-78) Pot 15.1 77 0.0056 15.9 3.8 26 28-53 6-31 (57)
6 d2axtj1 f.23.32.1 (J:7-40) Pho 15.0 59 0.0043 15.3 2.2 19 30-48 10-28 (34)
7 d1v29b_ b.34.4.4 (B:) Cobalt-c 15.0 43 0.0031 21.2 2.1 15 24-38 29-43 (229)
8 d1u19a_ f.13.1.2 (A:) Rhodopsi 14.2 98 0.0072 17.9 3.6 20 20-39 29-48 (348)
9 d1umza_ b.29.1.2 (A:) Xylogluc 13.8 9.9 0.00072 24.5 -1.3 14 2-15 233-246 (267)
10 d1kqfc_ f.21.1.1 (C:) Formate 13.7 82 0.006 18.2 3.1 28 24-51 109-136 (216)
No 1
>d1ks9a1 a.100.1.7 (A:168-291) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}
Probab=42.77 E-value=9.6 Score=21.01 Aligned_cols=17 Identities=18% Similarity=0.391 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHHHH
Q 040345 25 WWERYLFNILVVVLMWF 41 (61)
Q Consensus 25 pwEk~iFns~v~~ll~l 41 (61)
=|+|.++|+.+-.+.++
T Consensus 6 ~W~Kl~~N~~~n~l~al 22 (124)
T d1ks9a1 6 LWRKLAVNCVINPLTAI 22 (124)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHhHHHHH
Confidence 59999999987666655
No 2
>d1v54c_ f.25.1.1 (C:) Mitochondrial cytochrome c oxidase, subunit III {Cow (Bos taurus) [TaxId: 9913]}
Probab=21.10 E-value=42 Score=21.06 Aligned_cols=32 Identities=19% Similarity=0.064 Sum_probs=25.2
Q ss_pred hhhccchHHHHHHHHHHHHHHHHHHHHhhhhh
Q 040345 19 GLYMLDWWERYLFNILVVVLMWFIFYNGSKYV 50 (61)
Q Consensus 19 glYML~pwEk~iFns~v~~ll~l~~~~~~~Yl 50 (61)
|....+|++.-+.||++++.-|.++.-+...+
T Consensus 118 ~i~~~~~~~lpllnT~vLl~Ss~t~~~A~~~~ 149 (259)
T d1v54c_ 118 GIHPLNPLEVPLLNTSVLLASGVSITWAHHSL 149 (259)
T ss_dssp TCCCCCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567899999999999999998876665543
No 3
>d1ugpb_ b.34.4.4 (B:) Cobalt-containing nitrile hydratase {Pseudonocardia thermophila [TaxId: 1848]}
Probab=15.47 E-value=41 Score=21.29 Aligned_cols=12 Identities=25% Similarity=0.639 Sum_probs=9.6
Q ss_pred chHHHHHHHHHH
Q 040345 24 DWWERYLFNILV 35 (61)
Q Consensus 24 ~pwEk~iFns~v 35 (61)
+||||.+|-+.+
T Consensus 27 ~~WE~r~fAl~~ 38 (226)
T d1ugpb_ 27 AEWEKVAFAMFP 38 (226)
T ss_dssp SHHHHHHHHHHH
T ss_pred ChHHHHHHHHHH
Confidence 599999998643
No 4
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=15.36 E-value=66 Score=15.21 Aligned_cols=18 Identities=11% Similarity=0.375 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 040345 28 RYLFNILVVVLMWFIFYN 45 (61)
Q Consensus 28 k~iFns~v~~ll~l~~~~ 45 (61)
|...++++..++++.+++
T Consensus 5 Ki~Vy~vV~fFv~lFiFG 22 (35)
T d2axti1 5 KITVYIVVTFFVLLFVFG 22 (35)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred EEehhhHHHHHHHHHHHh
Confidence 455667777777666654
No 5
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=15.07 E-value=77 Score=15.88 Aligned_cols=26 Identities=8% Similarity=-0.047 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHH
Q 040345 28 RYLFNILVVVLMWFIFYNGSKYVTDF 53 (61)
Q Consensus 28 k~iFns~v~~ll~l~~~~~~~YlP~~ 53 (61)
|.+...++++++.+++.++..|+-++
T Consensus 6 R~~~~~~~~~~i~i~~~s~~~y~~E~ 31 (57)
T d2h8pc1 6 RAAGAATVLLVIVLLAGSYLAVLAER 31 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66666777777777788888887553
No 6
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=15.02 E-value=59 Score=15.30 Aligned_cols=19 Identities=21% Similarity=0.434 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 040345 30 LFNILVVVLMWFIFYNGSK 48 (61)
Q Consensus 30 iFns~v~~ll~l~~~~~~~ 48 (61)
+--+.++.++++.+|.+|.
T Consensus 10 v~G~~vi~~vG~FfYGsYs 28 (34)
T d2axtj1 10 VAGMGVIVIVGLFFYGAYA 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHTTT
T ss_pred hhhhhhHhheeeeeeeeec
Confidence 3445678888889998874
No 7
>d1v29b_ b.34.4.4 (B:) Cobalt-containing nitrile hydratase {Bacillus smithii [TaxId: 1479]}
Probab=14.95 E-value=43 Score=21.19 Aligned_cols=15 Identities=27% Similarity=0.623 Sum_probs=11.5
Q ss_pred chHHHHHHHHHHHHH
Q 040345 24 DWWERYLFNILVVVL 38 (61)
Q Consensus 24 ~pwEk~iFns~v~~l 38 (61)
+|||+.+|-+.+.+.
T Consensus 29 ~~WE~rafAl~~aL~ 43 (229)
T d1v29b_ 29 HDWERLTFGLVAGCM 43 (229)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHH
Confidence 599999998766543
No 8
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Probab=14.18 E-value=98 Score=17.90 Aligned_cols=20 Identities=15% Similarity=0.527 Sum_probs=14.0
Q ss_pred hhccchHHHHHHHHHHHHHH
Q 040345 20 LYMLDWWERYLFNILVVVLM 39 (61)
Q Consensus 20 lYML~pwEk~iFns~v~~ll 39 (61)
.+.-|||+..+...+..++.
T Consensus 29 ~~~~~~~~~~~~~~~~~ii~ 48 (348)
T d1u19a_ 29 YYLAEPWQFSMLAAYMFLLI 48 (348)
T ss_dssp TTTSCHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHH
Confidence 35668999988776665543
No 9
>d1umza_ b.29.1.2 (A:) Xyloglucan endotransglycosylase {European aspen (Populus tremula) [TaxId: 113636]}
Probab=13.82 E-value=9.9 Score=24.53 Aligned_cols=14 Identities=36% Similarity=1.063 Sum_probs=11.0
Q ss_pred hhhHHHHHHHHHHH
Q 040345 2 RAMNWIQRKIHLYN 15 (61)
Q Consensus 2 ~~~~w~~~k~yqYe 15 (61)
++|+|+|+|+.-|+
T Consensus 233 ~~~~~~~~~~~~y~ 246 (267)
T d1umza_ 233 RRLSWVRQKYTIYN 246 (267)
T ss_dssp HHHHHHHHHTEEEE
T ss_pred HHHHHHHHCCcEEc
Confidence 47999999986554
No 10
>d1kqfc_ f.21.1.1 (C:) Formate dehydrogenase N, cytochrome (gamma) subunit {Escherichia coli [TaxId: 562]}
Probab=13.74 E-value=82 Score=18.16 Aligned_cols=28 Identities=4% Similarity=0.102 Sum_probs=20.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 040345 24 DWWERYLFNILVVVLMWFIFYNGSKYVT 51 (61)
Q Consensus 24 ~pwEk~iFns~v~~ll~l~~~~~~~YlP 51 (61)
.|.+|..+-+++++...+++.+...+.|
T Consensus 109 n~~qkl~~~~~~~~~~~~~~TGl~l~~~ 136 (216)
T d1kqfc_ 109 NAGQKMMFWSIMSMIFVLLVTGVIIWRP 136 (216)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 5778888888877777777776666655
Done!