BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040346
(237 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P11402|ATPD_SPIOL ATP synthase delta chain, chloroplastic OS=Spinacia oleracea
GN=ATPD PE=1 SV=2
Length = 257
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 91/162 (56%), Gaps = 2/162 (1%)
Query: 70 LTSSSGTSTPKSASPNSHQ--KPASGYAAALLDKALCHSSLEAVQRDVLKLSRLLKNEQI 127
LT+S T+ P+ + + AS YA+AL D A +LEA DV KL R+ E +
Sbjct: 52 LTASKLTAKPRGGALGTRMVDSTASRYASALADVADVTGTLEATNSDVEKLIRIFSEEPV 111
Query: 128 QAVCADPFVGDKDKGQIVKELLSSWKVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDD 187
A+P + +K ++ E++++ + + A + +LI+ ++ +V ++L EF+ +++
Sbjct: 112 YYFFANPVISIDNKRSVLDEIITTSGLQPHTANFINILIDSERINLVKEILNEFEDVFNK 171
Query: 188 LIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCGAAQVKIRNLI 229
+ GT V V+S K+E D L IAK VQ + GA V+I+ +I
Sbjct: 172 ITGTEVAVVTSVVKLENDHLAQIAKGVQKITGAKNVRIKTVI 213
>sp|P32980|ATPD_TOBAC ATP synthase delta chain, chloroplastic OS=Nicotiana tabacum
GN=ATPD PE=2 SV=1
Length = 248
Score = 90.5 bits (223), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 83/141 (58%)
Query: 91 ASGYAAALLDKALCHSSLEAVQRDVLKLSRLLKNEQIQAVCADPFVGDKDKGQIVKELLS 150
A YA AL D A + +LE D+ K+ ++ +E + P VG++ K ++V E++S
Sbjct: 66 AGSYANALADIAKSNGTLEQTTADLEKIEKISDDEAVFNFFVSPIVGEEKKRELVDEIVS 125
Query: 151 SWKVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHI 210
S + ++A L +L++ +V ++ ++++EF+++Y+ L T + V+S K+E L I
Sbjct: 126 SSSIQPHVANFLNILVDMKRVELIKEIVKEFEKVYNTLTDTELAVVTSVVKLESQHLAQI 185
Query: 211 AKRVQNLCGAAQVKIRNLIQE 231
AK VQ L G+ V+I+ +I E
Sbjct: 186 AKGVQRLTGSKNVRIKTVIDE 206
>sp|Q02758|ATPD_PEA ATP synthase delta chain, chloroplastic OS=Pisum sativum GN=ATPD
PE=1 SV=1
Length = 251
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 74/130 (56%)
Query: 100 DKALCHSSLEAVQRDVLKLSRLLKNEQIQAVCADPFVGDKDKGQIVKELLSSWKVNSYLA 159
D A +++L+A+ D K+ +L + ++ + P V D K Q++ E ++ +
Sbjct: 78 DLANSNNTLDAITADFDKIEQLFSDPKVFDYFSSPIVEDSTKRQLIGEFATTSGFQPHTH 137
Query: 160 ALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCG 219
L +LI+ ++ M+ D+++EF+ +Y+ L T +V V+S K+E L IAK+VQ L G
Sbjct: 138 NFLNVLIDSKRIDMIIDIIKEFEFVYNTLTDTELVVVTSVVKLESHHLAQIAKQVQKLTG 197
Query: 220 AAQVKIRNLI 229
A +V+ + L+
Sbjct: 198 AKKVRTKTLL 207
>sp|Q07300|ATPD_SORBI ATP synthase delta chain, chloroplastic OS=Sorghum bicolor GN=ATPD
PE=2 SV=1
Length = 247
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 78/137 (56%)
Query: 91 ASGYAAALLDKALCHSSLEAVQRDVLKLSRLLKNEQIQAVCADPFVGDKDKGQIVKELLS 150
A YA+AL + A+ + +LE D+ KL ++ +E + +P V ++K ++ E+
Sbjct: 65 ADSYASALSEVAVENGTLEQTVSDLEKLQKIFADETVAEFFDNPTVPREEKTALIDEIAK 124
Query: 151 SWKVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHI 210
S+++ ++ + ++++ + ++ +++ EF+ I++ L GT V V+S ++E L I
Sbjct: 125 SYELQPHVVNFINVVVDNFRATILPEIVVEFENIFNSLTGTEVATVTSVVQLESQDLAQI 184
Query: 211 AKRVQNLCGAAQVKIRN 227
A+ VQ + GA V+++
Sbjct: 185 AQHVQKMTGAKNVRLKT 201
>sp|Q42687|ATPD_CHLRE ATP synthase delta chain, chloroplastic OS=Chlamydomonas
reinhardtii GN=ATPD PE=1 SV=1
Length = 219
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 80/137 (58%), Gaps = 1/137 (0%)
Query: 94 YAAALLDKALCHSSLEAVQRDVLKLSRLLK-NEQIQAVCADPFVGDKDKGQIVKELLSSW 152
YA AL++ A LEAV DV ++ L+K N ++ A+ +P V K ++ ++
Sbjct: 42 YAKALVELADEKGKLEAVHADVDAVAGLMKENAKLSALIMNPVVESDKKRAVLAKIAKEA 101
Query: 153 KVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAK 212
Y L +L+E++++++V ++ E F+ +Y + T+V + SA K+E++Q F IAK
Sbjct: 102 GFQQYTINWLNLLVEKDRLSLVPEICECFEDLYCQMTDTQVATLRSAVKLEQEQQFLIAK 161
Query: 213 RVQNLCGAAQVKIRNLI 229
++Q L G+ +K++ +I
Sbjct: 162 KLQELTGSKNIKLKPVI 178
>sp|Q11YP2|ATPD_CYTH3 ATP synthase subunit delta OS=Cytophaga hutchinsonii (strain ATCC
33406 / NCIMB 9469) GN=atpH PE=3 SV=1
Length = 182
Score = 57.8 bits (138), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 69/119 (57%), Gaps = 2/119 (1%)
Query: 89 KPASGYAAALLDKALCHSSLEAVQRDVLKLSRLLK-NEQIQAVCADPFVGDKDKGQIVKE 147
+ A YA +L+D A + L+ V D+ + + K N Q+ AV +P V DK + E
Sbjct: 5 RVAYRYAKSLIDLAAENGVLDRVNADMAGIESVFKQNHQLVAVMKNPIV-QGDKKHAILE 63
Query: 148 LLSSWKVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQ 206
L KV+++ +LL +L ++++ A+V ++ EFQR Y + +G ++V V++ + + EDQ
Sbjct: 64 ALFGGKVDNFTMSLLSLLTKKHREAVVFEISSEFQRQYREKMGIKIVEVTTTQPITEDQ 122
>sp|A3PEU0|ATPD_PROM0 ATP synthase subunit delta OS=Prochlorococcus marinus (strain MIT
9301) GN=atpH PE=3 SV=1
Length = 180
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 76/142 (53%), Gaps = 5/142 (3%)
Query: 85 NSHQKPASGYAAALLDKALCHSSLEAVQRDVLKLSRLLKNE-QIQAVCADPFVGDKDKGQ 143
NS P YA ALL +S E + +V +L L+ N +++ + P + K +
Sbjct: 5 NSVTTP---YAEALLQVVNENSQTEEMVSEVKQLLELINNSPELEKALSSPILETDAKKK 61
Query: 144 IVKELLSSWKVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKME 203
I+ E+ S KVNS L L++L +R ++ +++ +L+ F IY + + V+SA ++
Sbjct: 62 IINEIFSK-KVNSSLLNFLKLLADRQRIGILTSILDRFLEIYRENSNIALATVTSAVELT 120
Query: 204 EDQLFHIAKRVQNLCGAAQVKI 225
++Q I K++ N+ G ++++
Sbjct: 121 DEQKGLITKKIINIAGTEKLEL 142
>sp|Q8DLP4|ATPD_THEEB ATP synthase subunit delta OS=Thermosynechococcus elongatus (strain
BP-1) GN=atpH PE=3 SV=1
Length = 185
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 74/133 (55%), Gaps = 2/133 (1%)
Query: 94 YAAALLDKALCHSSLEAVQRDVLKLSRLLKNE-QIQAVCADPFVGDKDKGQIVKELLSSW 152
YA ALL A H+ ++ Q+D + L+ + ++Q A+P + + K ++++L +
Sbjct: 14 YAEALLSLAQTHNLIDQFQQDTQLMVELVASSGELQQFLANPLIKPEAKKNVLRQL-TVD 72
Query: 153 KVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAK 212
KV+ Y L +L++R ++ +S + E ++ + L + V+SA ++ +DQ + +
Sbjct: 73 KVHGYFLNFLMLLVDRRRINFLSSICEHYRALVRKLRNVALAEVTSAVELNDDQRRAVVE 132
Query: 213 RVQNLCGAAQVKI 225
+V+ + GAA V++
Sbjct: 133 KVKTMTGAADVEL 145
>sp|Q7V036|ATPD_PROMP ATP synthase subunit delta OS=Prochlorococcus marinus subsp.
pastoris (strain CCMP1986 / MED4) GN=atpH PE=3 SV=1
Length = 180
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 75/142 (52%), Gaps = 5/142 (3%)
Query: 85 NSHQKPASGYAAALLDKALCHSSLEAVQRDVLKLSRLLKNE-QIQAVCADPFVGDKDKGQ 143
NS P YA ALL + E + ++V +L L+ + ++ + P + K +
Sbjct: 5 NSVTTP---YAEALLQVVSENDQTEEMVKEVKQLLSLINDSPDLEKTLSSPVLETDTKKK 61
Query: 144 IVKELLSSWKVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKME 203
I+ E+ S K+NS L L++L +R ++ +V+ +L+ F IY + + V+SA ++
Sbjct: 62 IIIEIFSE-KINSSLLNFLKLLADRQRIGIVTSILDRFLEIYRENSNIALATVTSAVELT 120
Query: 204 EDQLFHIAKRVQNLCGAAQVKI 225
+DQ I K++ N+ G ++++
Sbjct: 121 DDQKGLITKKIINIAGTEKLEL 142
>sp|Q65DX1|ATPD_BACLD ATP synthase subunit delta OS=Bacillus licheniformis (strain DSM 13
/ ATCC 14580) GN=atpH PE=3 SV=1
Length = 184
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 76/135 (56%), Gaps = 3/135 (2%)
Query: 94 YAAALLDKALCHSSLEAVQRDVLKLSRL-LKNEQIQAVCADPFVGDKDKGQIVKELLSSW 152
YAAAL D AL + ++ ++ + ++ ++++ + AV P V + K QI+K+ S
Sbjct: 10 YAAALFDIALESKLVNEIEEELTVVKKIFIEHKDLNAVLGHPKVPAEKKKQILKDSFGS- 68
Query: 153 KVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAK 212
V++ + L +L++R++ ++V D+ +E+ ++ + GT V S K + E+++ ++
Sbjct: 69 -VSTAVLHTLYLLVDRSRTSIVPDLADEYVKMANRFRGTEDAIVYSVKPLSEEEISSFSQ 127
Query: 213 RVQNLCGAAQVKIRN 227
GAA +++RN
Sbjct: 128 VFAKEAGAASLRVRN 142
>sp|P12406|ATPD_NOSS1 ATP synthase subunit delta OS=Nostoc sp. (strain PCC 7120 / UTEX
2576) GN=atpH PE=3 SV=1
Length = 183
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 78/144 (54%), Gaps = 3/144 (2%)
Query: 83 SPNSHQKPASGYAAALLDKALCHSSLEAVQRDVLKLSRLL-KNEQIQAVCADPFVGDKDK 141
S ++ + A YA ALL A S E D L LL +N+Q++ +PF+ ++K
Sbjct: 3 SKVANTEVAQPYAQALLSIAKSKSLTEEFGTDARTLLNLLTENQQLRNFIDNPFIAAENK 62
Query: 142 GQIVKELLSSWKVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKK 201
++K++LS + + YL L +L+++ ++ + ++L+++ + L T + V+SA
Sbjct: 63 KALIKQILS--EASPYLRNFLLLLVDKRRIFFLPEILQQYLALLRQLNQTVLAEVTSAVA 120
Query: 202 MEEDQLFHIAKRVQNLCGAAQVKI 225
+ EDQ + ++V L A QV++
Sbjct: 121 LTEDQQQAVTEKVLALTKARQVEL 144
>sp|A2BT26|ATPD_PROMS ATP synthase subunit delta OS=Prochlorococcus marinus (strain
AS9601) GN=atpH PE=3 SV=1
Length = 180
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 77/142 (54%), Gaps = 5/142 (3%)
Query: 85 NSHQKPASGYAAALLDKALCHSSLEAVQRDVLKLSRLLKNE-QIQAVCADPFVGDKDKGQ 143
NS P YA ALL +S E + +V +L L+ + +++ + P + K +
Sbjct: 5 NSVTTP---YAEALLQVVNENSQTEEMVSEVKQLLELVNDSPELEKALSSPILETDAKKK 61
Query: 144 IVKELLSSWKVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKME 203
I+ E+ S+ KVNS L L++L +R ++ +++ +L+ F IY + + V+SA ++
Sbjct: 62 IIIEIFSN-KVNSSLLNFLKLLADRQRIGILTSILDRFLEIYRENSNIALATVTSAVELT 120
Query: 204 EDQLFHIAKRVQNLCGAAQVKI 225
++Q I K++ N+ G ++++
Sbjct: 121 DEQKGLITKKIINIAGTEKLEL 142
>sp|Q3M9V9|ATPD_ANAVT ATP synthase subunit delta OS=Anabaena variabilis (strain ATCC
29413 / PCC 7937) GN=atpH PE=3 SV=1
Length = 183
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 78/144 (54%), Gaps = 3/144 (2%)
Query: 83 SPNSHQKPASGYAAALLDKALCHSSLEAVQRDVLKLSRLL-KNEQIQAVCADPFVGDKDK 141
S ++ + A YA ALL A S E D L LL +N+Q++ +PF+ ++K
Sbjct: 3 SKVANTEVAQPYAQALLSIAKSKSLTEEFGTDARTLLNLLAENQQLRNFIDNPFIAAENK 62
Query: 142 GQIVKELLSSWKVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKK 201
++K++LS + + YL L +L+++ ++ + ++L+++ + L T + V+SA
Sbjct: 63 KALIKQILS--EASPYLRNFLLLLVDKRRIFFLEEILQQYLALLRQLNQTVLAEVTSAVA 120
Query: 202 MEEDQLFHIAKRVQNLCGAAQVKI 225
+ EDQ + ++V L A QV++
Sbjct: 121 LTEDQQQAVKEKVLALTKARQVEL 144
>sp|A8G6V2|ATPD_PROM2 ATP synthase subunit delta OS=Prochlorococcus marinus (strain MIT
9215) GN=atpH PE=3 SV=1
Length = 180
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 76/142 (53%), Gaps = 5/142 (3%)
Query: 85 NSHQKPASGYAAALLDKALCHSSLEAVQRDVLKLSRLLKNE-QIQAVCADPFVGDKDKGQ 143
NS P YA ALL + E + +V +L L+ + +++ + P + K +
Sbjct: 5 NSVTTP---YAEALLQVVNENLQTEEMVSEVKQLLELINDSPELEKALSSPILETDAKKK 61
Query: 144 IVKELLSSWKVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKME 203
I+ E+ S+ KVNS L L++L +R ++ +++ +LE F IY + + V+SA ++
Sbjct: 62 IIIEIFSN-KVNSSLMNFLKLLADRQRIGILTSILERFLEIYRENSNIALATVTSAVELT 120
Query: 204 EDQLFHIAKRVQNLCGAAQVKI 225
++Q I +++ N+ G ++++
Sbjct: 121 DEQKGLITQKIINIAGTEKLEL 142
>sp|Q318U0|ATPD_PROM9 ATP synthase subunit delta OS=Prochlorococcus marinus (strain MIT
9312) GN=atpH PE=3 SV=1
Length = 180
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 76/142 (53%), Gaps = 5/142 (3%)
Query: 85 NSHQKPASGYAAALLDKALCHSSLEAVQRDVLKLSRLLKNE-QIQAVCADPFVGDKDKGQ 143
NS P YA ALL + E + +V +L LL + +++ + P + + K +
Sbjct: 5 NSVTTP---YAEALLQVVNENLQTEEMVSEVKQLLELLNDSPELEKALSSPILETEAKKK 61
Query: 144 IVKELLSSWKVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKME 203
I+ E+ S+ KVNS L L++L +R ++ +++ +L F IY + + V+SA ++
Sbjct: 62 IIIEIFSN-KVNSSLLNFLKLLADRQRIGILTSILNRFLEIYRENSNIALATVTSAVELT 120
Query: 204 EDQLFHIAKRVQNLCGAAQVKI 225
++Q I +++ N+ G ++++
Sbjct: 121 DEQKGLITQKIVNIAGTQKLEL 142
>sp|B0JWV0|ATPD_MICAN ATP synthase subunit delta OS=Microcystis aeruginosa (strain
NIES-843) GN=atpH PE=3 SV=1
Length = 182
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 71/134 (52%), Gaps = 2/134 (1%)
Query: 94 YAAALLDKALCHSSLEAVQRDVLKLSRLLKNE-QIQAVCADPFVGDKDKGQIVKELLSSW 152
YA ALL A LEA+ ++ L LL+N ++A +P + ++ K ++ +++ S
Sbjct: 14 YAQALLSVAQSSGQLEAIGGEIKSLLELLENAPDLRAFIGNPVIKEEAKKAVLSQVMGS- 72
Query: 153 KVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAK 212
N YL + +L+++ ++ + V +++ + L T + VSSA ++ + Q +
Sbjct: 73 SANPYLTNFMMLLVDKRRIQFLEPVCQQYLTLARVLTNTVLAEVSSATELNDSQKQIVID 132
Query: 213 RVQNLCGAAQVKIR 226
+V+ L GA V+++
Sbjct: 133 KVKTLTGANVVELK 146
>sp|A8YUJ8|ATPD_LACH4 ATP synthase subunit delta OS=Lactobacillus helveticus (strain DPC
4571) GN=atpH PE=3 SV=1
Length = 182
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 70/125 (56%), Gaps = 7/125 (5%)
Query: 86 SHQKPASGYAAALLDKALCHSSLEAVQRDVLKLSR-LLKNEQIQAVCADPFVGDKDKGQI 144
S ++ A+ Y AAL A + L+ V ++++L + ++ Q+ +V +DP + KDK
Sbjct: 4 SREEVAARYGAALFGYAQDNKVLDNVYDEMMELKKAVIATPQVISVLSDPILNSKDK--- 60
Query: 145 VKELLSSWKVN--SYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKM 202
K+ L++ + N + L +L+E ++ A + D++++F +YDD ++A K+
Sbjct: 61 -KDFLTAIEKNFSEEVQGFLNLLLEYDRFAYLVDIIDQFAVLYDDKNKIASGTATTAVKL 119
Query: 203 EEDQL 207
++DQL
Sbjct: 120 DDDQL 124
>sp|B5EFJ0|ATPD_GEOBB ATP synthase subunit delta OS=Geobacter bemidjiensis (strain Bem /
ATCC BAA-1014 / DSM 16622) GN=atpH PE=3 SV=1
Length = 180
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 66/118 (55%), Gaps = 1/118 (0%)
Query: 94 YAAALLDKALCHSSLEAVQRDVLKLSRLLKNEQ-IQAVCADPFVGDKDKGQIVKELLSSW 152
YA AL+ S+++ ++ + S LL + + + AV A+P G + K +++KEL++
Sbjct: 10 YAKALVQLGSEAGSVDSFNAELTRFSALLTDSRDLSAVFANPAYGIESKREVMKELVAKL 69
Query: 153 KVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHI 210
+++ ++ LL +L+ER +++++ + E + D+L G +SS +E Q+ I
Sbjct: 70 QLSPMISNLLMLLLERGRISVLPQISESYGAFADELSGVIRPTLSSGLPLEASQIEEI 127
>sp|Q2S433|ATPD_SALRD ATP synthase subunit delta OS=Salinibacter ruber (strain DSM 13855
/ M31) GN=atpH PE=3 SV=1
Length = 190
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 2/98 (2%)
Query: 94 YAAALLDKALCHSSLEAVQRDV-LKLSRLLKNEQIQAVCADPFVGDKDKGQIVKELLSSW 152
YAAAL ++A + LEAV DV + L L N + V P + K IV+ELL
Sbjct: 10 YAAALYEEANANGVLEAVDEDVRMLLESLDSNRPLVRVFESPVIPQDKKDSIVRELLGD- 68
Query: 153 KVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIG 190
+V LR+LI +++ M +L+++Q + D+ G
Sbjct: 69 RVEDLTVRFLRLLIRKDRETMTEAILDQYQTLRDEQRG 106
>sp|Q6GEW9|ATPD_STAAR ATP synthase subunit delta OS=Staphylococcus aureus (strain
MRSA252) GN=atpH PE=3 SV=1
Length = 179
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/162 (20%), Positives = 80/162 (49%), Gaps = 20/162 (12%)
Query: 89 KPASGYAAALLDKALCHSSLEAVQRDVLKLSRLLKN--EQIQAVCADPFVGDKDKGQIVK 146
K A+ YA AL D +L ++LE + ++ ++ +K+ EQ++ V ++P + + +++
Sbjct: 3 KVANKYAKALFDVSLDTNNLETINEELTVINEAVKDKIEQLKMVDSNPTQTAEQRRELIN 62
Query: 147 ELLSSWKVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQ 206
+ + +N Y+ ++ +L + +++++DV + FQ +Y+ + S ++ +++
Sbjct: 63 GVFTD--INPYIKNMMYVLADNRHISLIADVFKAFQSLYNGHYNQDFATIESTYELSQEE 120
Query: 207 LFHIAKRVQ----------------NLCGAAQVKIRNLIQEG 232
L I K V +L G +VK+ + +G
Sbjct: 121 LVKIVKLVTQQTKLSKVIVDTKINPDLIGGFRVKVGTTVLDG 162
>sp|A7Z9Q3|ATPD_BACA2 ATP synthase subunit delta OS=Bacillus amyloliquefaciens (strain
FZB42) GN=atpH PE=3 SV=1
Length = 181
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 72/138 (52%), Gaps = 3/138 (2%)
Query: 94 YAAALLDKALCHSSLEAVQRDVLKLSRLLKNEQ-IQAVCADPFVGDKDKGQIVKELLSSW 152
YA+AL D A+ S + ++ ++ L + +NE +Q V + P V K +++++ +
Sbjct: 10 YASALFDIAVETSQINEIEEELTVLKEVFRNEAGLQEVLSHPKVSAAKKKELIQQSFGAL 69
Query: 153 KVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAK 212
S L + +LI+R + ++V D+ +EF ++ + T V S K + E ++ +++
Sbjct: 70 S-ESVLHTIF-LLIDRRRSSIVPDLTDEFIKLANQARQTEDAVVYSVKPLSEAEMLSLSQ 127
Query: 213 RVQNLCGAAQVKIRNLIQ 230
G A ++IRN +Q
Sbjct: 128 VFAKKAGIASLRIRNEVQ 145
>sp|P63659|ATPD_STAAW ATP synthase subunit delta OS=Staphylococcus aureus (strain MW2)
GN=atpH PE=3 SV=1
Length = 179
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/162 (20%), Positives = 80/162 (49%), Gaps = 20/162 (12%)
Query: 89 KPASGYAAALLDKALCHSSLEAVQRDVLKLSRLLKN--EQIQAVCADPFVGDKDKGQIVK 146
K A+ YA AL D +L ++LE + ++ ++ +K+ EQ++ V ++P + + +++
Sbjct: 3 KVANKYAKALFDVSLDTNNLETINEELTVINEAVKDKIEQLKMVDSNPTQTAEQRRELIN 62
Query: 147 ELLSSWKVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQ 206
+ + +N Y+ ++ +L + +++++DV + FQ +Y+ + S ++ +++
Sbjct: 63 GVFTD--INPYIKNMMYVLADNRHISLIADVFKAFQSLYNGHYNQDFATIESTYELSQEE 120
Query: 207 LFHIAKRVQ----------------NLCGAAQVKIRNLIQEG 232
L I K V +L G +VK+ + +G
Sbjct: 121 LDKIVKLVTQQTKLSKVIVDTKINPDLIGGFRVKVGTTVLDG 162
>sp|Q6G7K4|ATPD_STAAS ATP synthase subunit delta OS=Staphylococcus aureus (strain
MSSA476) GN=atpH PE=3 SV=1
Length = 179
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/162 (20%), Positives = 80/162 (49%), Gaps = 20/162 (12%)
Query: 89 KPASGYAAALLDKALCHSSLEAVQRDVLKLSRLLKN--EQIQAVCADPFVGDKDKGQIVK 146
K A+ YA AL D +L ++LE + ++ ++ +K+ EQ++ V ++P + + +++
Sbjct: 3 KVANKYAKALFDVSLDTNNLETINEELTVINEAVKDKIEQLKMVDSNPTQTAEQRRELIN 62
Query: 147 ELLSSWKVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQ 206
+ + +N Y+ ++ +L + +++++DV + FQ +Y+ + S ++ +++
Sbjct: 63 GVFTD--INPYIKNMMYVLADNRHISLIADVFKAFQSLYNGHYNQDFATIESTYELSQEE 120
Query: 207 LFHIAKRVQ----------------NLCGAAQVKIRNLIQEG 232
L I K V +L G +VK+ + +G
Sbjct: 121 LDKIVKLVTQQTKLSKVIVDTKINPDLIGGFRVKVGTTVLDG 162
>sp|P99109|ATPD_STAAN ATP synthase subunit delta OS=Staphylococcus aureus (strain N315)
GN=atpH PE=1 SV=1
Length = 179
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/162 (20%), Positives = 80/162 (49%), Gaps = 20/162 (12%)
Query: 89 KPASGYAAALLDKALCHSSLEAVQRDVLKLSRLLKN--EQIQAVCADPFVGDKDKGQIVK 146
K A+ YA AL D +L ++LE + ++ ++ +K+ EQ++ V ++P + + +++
Sbjct: 3 KVANKYAKALFDVSLDTNNLETINEELTVINEAVKDKIEQLKMVDSNPTQTAEQRRELIN 62
Query: 147 ELLSSWKVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQ 206
+ + +N Y+ ++ +L + +++++DV + FQ +Y+ + S ++ +++
Sbjct: 63 GVFTD--INPYIKNMMYVLADNRHISLIADVFKAFQSLYNGHYNQDFATIESTYELSQEE 120
Query: 207 LFHIAKRVQ----------------NLCGAAQVKIRNLIQEG 232
L I K V +L G +VK+ + +G
Sbjct: 121 LDKIVKLVTQQTKLSKVIVDTKINPDLIGGFRVKVGTTVLDG 162
>sp|P63658|ATPD_STAAM ATP synthase subunit delta OS=Staphylococcus aureus (strain Mu50 /
ATCC 700699) GN=atpH PE=1 SV=1
Length = 179
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/162 (20%), Positives = 80/162 (49%), Gaps = 20/162 (12%)
Query: 89 KPASGYAAALLDKALCHSSLEAVQRDVLKLSRLLKN--EQIQAVCADPFVGDKDKGQIVK 146
K A+ YA AL D +L ++LE + ++ ++ +K+ EQ++ V ++P + + +++
Sbjct: 3 KVANKYAKALFDVSLDTNNLETINEELTVINEAVKDKIEQLKMVDSNPTQTAEQRRELIN 62
Query: 147 ELLSSWKVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQ 206
+ + +N Y+ ++ +L + +++++DV + FQ +Y+ + S ++ +++
Sbjct: 63 GVFTD--INPYIKNMMYVLADNRHISLIADVFKAFQSLYNGHYNQDFATIESTYELSQEE 120
Query: 207 LFHIAKRVQ----------------NLCGAAQVKIRNLIQEG 232
L I K V +L G +VK+ + +G
Sbjct: 121 LDKIVKLVTQQTKLSKVIVDTKINPDLIGGFRVKVGTTVLDG 162
>sp|A5IUQ1|ATPD_STAA9 ATP synthase subunit delta OS=Staphylococcus aureus (strain JH9)
GN=atpH PE=3 SV=1
Length = 179
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/162 (20%), Positives = 80/162 (49%), Gaps = 20/162 (12%)
Query: 89 KPASGYAAALLDKALCHSSLEAVQRDVLKLSRLLKN--EQIQAVCADPFVGDKDKGQIVK 146
K A+ YA AL D +L ++LE + ++ ++ +K+ EQ++ V ++P + + +++
Sbjct: 3 KVANKYAKALFDVSLDTNNLETINEELTVINEAVKDKIEQLKMVDSNPTQTAEQRRELIN 62
Query: 147 ELLSSWKVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQ 206
+ + +N Y+ ++ +L + +++++DV + FQ +Y+ + S ++ +++
Sbjct: 63 GVFTD--INPYIKNMMYVLADNRHISLIADVFKAFQSLYNGHYNQDFATIESTYELSQEE 120
Query: 207 LFHIAKRVQ----------------NLCGAAQVKIRNLIQEG 232
L I K V +L G +VK+ + +G
Sbjct: 121 LDKIVKLVTQQTKLSKVIVDTKINPDLIGGFRVKVGTTVLDG 162
>sp|A6U3J1|ATPD_STAA2 ATP synthase subunit delta OS=Staphylococcus aureus (strain JH1)
GN=atpH PE=3 SV=1
Length = 179
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/162 (20%), Positives = 80/162 (49%), Gaps = 20/162 (12%)
Query: 89 KPASGYAAALLDKALCHSSLEAVQRDVLKLSRLLKN--EQIQAVCADPFVGDKDKGQIVK 146
K A+ YA AL D +L ++LE + ++ ++ +K+ EQ++ V ++P + + +++
Sbjct: 3 KVANKYAKALFDVSLDTNNLETINEELTVINEAVKDKIEQLKMVDSNPTQTAEQRRELIN 62
Query: 147 ELLSSWKVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQ 206
+ + +N Y+ ++ +L + +++++DV + FQ +Y+ + S ++ +++
Sbjct: 63 GVFTD--INPYIKNMMYVLADNRHISLIADVFKAFQSLYNGHYNQDFATIESTYELSQEE 120
Query: 207 LFHIAKRVQ----------------NLCGAAQVKIRNLIQEG 232
L I K V +L G +VK+ + +G
Sbjct: 121 LDKIVKLVTQQTKLSKVIVDTKINPDLIGGFRVKVGTTVLDG 162
>sp|A7X4U8|ATPD_STAA1 ATP synthase subunit delta OS=Staphylococcus aureus (strain Mu3 /
ATCC 700698) GN=atpH PE=3 SV=1
Length = 179
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/162 (20%), Positives = 80/162 (49%), Gaps = 20/162 (12%)
Query: 89 KPASGYAAALLDKALCHSSLEAVQRDVLKLSRLLKN--EQIQAVCADPFVGDKDKGQIVK 146
K A+ YA AL D +L ++LE + ++ ++ +K+ EQ++ V ++P + + +++
Sbjct: 3 KVANKYAKALFDVSLDTNNLETINEELTVINEAVKDKIEQLKMVDSNPTQTAEQRRELIN 62
Query: 147 ELLSSWKVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQ 206
+ + +N Y+ ++ +L + +++++DV + FQ +Y+ + S ++ +++
Sbjct: 63 GVFTD--INPYIKNMMYVLADNRHISLIADVFKAFQSLYNGHYNQDFATIESTYELSQEE 120
Query: 207 LFHIAKRVQ----------------NLCGAAQVKIRNLIQEG 232
L I K V +L G +VK+ + +G
Sbjct: 121 LDKIVKLVTQQTKLSKVIVDTKINPDLIGGFRVKVGTTVLDG 162
>sp|B9LZ87|ATPD_GEOSF ATP synthase subunit delta OS=Geobacter sp. (strain FRC-32) GN=atpH
PE=3 SV=1
Length = 180
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 66/127 (51%), Gaps = 1/127 (0%)
Query: 94 YAAALLDKALCHSSLEAVQRDVLKLSRLLKNE-QIQAVCADPFVGDKDKGQIVKELLSSW 152
YA AL+ +++ ++ + + +L + AV ++P G + K +I+KE+++
Sbjct: 10 YAKALVQIGAEEGNVDKFSGELSQFTGVLAGSTSLTAVFSNPAYGIEAKKEILKEIMTKL 69
Query: 153 KVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAK 212
+++ +A L++L++RN++ + ++E F DDL G ++S +E+ Q+ I
Sbjct: 70 GLSNNVANFLQLLLDRNRLPFLPQIVESFNSFADDLSGVIRPTLTSGLPLEQSQIDEIKN 129
Query: 213 RVQNLCG 219
+ G
Sbjct: 130 SLTKATG 136
>sp|A8YY73|ATPD_STAAT ATP synthase subunit delta OS=Staphylococcus aureus (strain USA300
/ TCH1516) GN=atpH PE=3 SV=1
Length = 179
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/162 (20%), Positives = 80/162 (49%), Gaps = 20/162 (12%)
Query: 89 KPASGYAAALLDKALCHSSLEAVQRDVLKLSRLLKN--EQIQAVCADPFVGDKDKGQIVK 146
K A+ YA AL D +L ++LE + ++ ++ +K+ EQ++ V ++P + + +++
Sbjct: 3 KVANKYAKALFDVSLDTNNLETINEELTVINEAVKDKIEQLRMVDSNPTQTAEQRRELIN 62
Query: 147 ELLSSWKVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQ 206
+ + +N Y+ ++ +L + +++++DV + FQ +Y+ + S ++ +++
Sbjct: 63 GVFTD--INPYIKNMMYVLADNRHISLIADVFKAFQSLYNGHYNQDFATIESTYELSQEE 120
Query: 207 LFHIAKRVQ----------------NLCGAAQVKIRNLIQEG 232
L I K V +L G +VK+ + +G
Sbjct: 121 LDKIVKLVTQQTKLSKVIVDTKINPDLIGGFRVKVGTTVLDG 162
>sp|A6QIV0|ATPD_STAAE ATP synthase subunit delta OS=Staphylococcus aureus (strain Newman)
GN=atpH PE=3 SV=1
Length = 179
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/162 (20%), Positives = 80/162 (49%), Gaps = 20/162 (12%)
Query: 89 KPASGYAAALLDKALCHSSLEAVQRDVLKLSRLLKN--EQIQAVCADPFVGDKDKGQIVK 146
K A+ YA AL D +L ++LE + ++ ++ +K+ EQ++ V ++P + + +++
Sbjct: 3 KVANKYAKALFDVSLDTNNLETINEELTVINEAVKDKIEQLRMVDSNPTQTAEQRRELIN 62
Query: 147 ELLSSWKVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQ 206
+ + +N Y+ ++ +L + +++++DV + FQ +Y+ + S ++ +++
Sbjct: 63 GVFTD--INPYIKNMMYVLADNRHISLIADVFKAFQSLYNGHYNQDFATIESTYELSQEE 120
Query: 207 LFHIAKRVQ----------------NLCGAAQVKIRNLIQEG 232
L I K V +L G +VK+ + +G
Sbjct: 121 LDKIVKLVTQQTKLSKVIVDTKINPDLIGGFRVKVGTTVLDG 162
>sp|Q5HE94|ATPD_STAAC ATP synthase subunit delta OS=Staphylococcus aureus (strain COL)
GN=atpH PE=3 SV=1
Length = 179
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/162 (20%), Positives = 80/162 (49%), Gaps = 20/162 (12%)
Query: 89 KPASGYAAALLDKALCHSSLEAVQRDVLKLSRLLKN--EQIQAVCADPFVGDKDKGQIVK 146
K A+ YA AL D +L ++LE + ++ ++ +K+ EQ++ V ++P + + +++
Sbjct: 3 KVANKYAKALFDVSLDTNNLETINEELTVINEAVKDKIEQLRMVDSNPTQTAEQRRELIN 62
Query: 147 ELLSSWKVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQ 206
+ + +N Y+ ++ +L + +++++DV + FQ +Y+ + S ++ +++
Sbjct: 63 GVFTD--INPYIKNMMYVLADNRHISLIADVFKAFQSLYNGHYNQDFATIESTYELSQEE 120
Query: 207 LFHIAKRVQ----------------NLCGAAQVKIRNLIQEG 232
L I K V +L G +VK+ + +G
Sbjct: 121 LDKIVKLVTQQTKLSKVIVDTKINPDLIGGFRVKVGTTVLDG 162
>sp|Q2FWE7|ATPD_STAA8 ATP synthase subunit delta OS=Staphylococcus aureus (strain NCTC
8325) GN=atpH PE=3 SV=1
Length = 179
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/162 (20%), Positives = 80/162 (49%), Gaps = 20/162 (12%)
Query: 89 KPASGYAAALLDKALCHSSLEAVQRDVLKLSRLLKN--EQIQAVCADPFVGDKDKGQIVK 146
K A+ YA AL D +L ++LE + ++ ++ +K+ EQ++ V ++P + + +++
Sbjct: 3 KVANKYAKALFDVSLDTNNLETINEELTVINEAVKDKIEQLRMVDSNPTQTAEQRRELIN 62
Query: 147 ELLSSWKVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQ 206
+ + +N Y+ ++ +L + +++++DV + FQ +Y+ + S ++ +++
Sbjct: 63 GVFTD--INPYIKNMMYVLADNRHISLIADVFKAFQSLYNGHYNQDFATIESTYELSQEE 120
Query: 207 LFHIAKRVQ----------------NLCGAAQVKIRNLIQEG 232
L I K V +L G +VK+ + +G
Sbjct: 121 LDKIVKLVTQQTKLSKVIVDTKINPDLIGGFRVKVGTTVLDG 162
>sp|Q2FF21|ATPD_STAA3 ATP synthase subunit delta OS=Staphylococcus aureus (strain USA300)
GN=atpH PE=3 SV=1
Length = 179
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/162 (20%), Positives = 80/162 (49%), Gaps = 20/162 (12%)
Query: 89 KPASGYAAALLDKALCHSSLEAVQRDVLKLSRLLKN--EQIQAVCADPFVGDKDKGQIVK 146
K A+ YA AL D +L ++LE + ++ ++ +K+ EQ++ V ++P + + +++
Sbjct: 3 KVANKYAKALFDVSLDTNNLETINEELTVINEAVKDKIEQLRMVDSNPTQTAEQRRELIN 62
Query: 147 ELLSSWKVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQ 206
+ + +N Y+ ++ +L + +++++DV + FQ +Y+ + S ++ +++
Sbjct: 63 GVFTD--INPYIKNMMYVLADNRHISLIADVFKAFQSLYNGHYNQDFATIESTYELSQEE 120
Query: 207 LFHIAKRVQ----------------NLCGAAQVKIRNLIQEG 232
L I K V +L G +VK+ + +G
Sbjct: 121 LDKIVKLVTQQTKLSKVIVDTKINPDLIGGFRVKVGTTVLDG 162
>sp|C6E9F4|ATPD_GEOSM ATP synthase subunit delta OS=Geobacter sp. (strain M21) GN=atpH
PE=3 SV=1
Length = 180
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 67/118 (56%), Gaps = 1/118 (0%)
Query: 94 YAAALLDKALCHSSLEAVQRDVLKLSRLL-KNEQIQAVCADPFVGDKDKGQIVKELLSSW 152
YA AL+ ++++ ++ + S LL ++ + AV A+P G + K +++KEL++
Sbjct: 10 YAKALVQLGSEAGTVDSFNTELDRFSALLTESRDLSAVFANPAYGIESKREVMKELVAKL 69
Query: 153 KVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHI 210
+++ ++ LL +L+ER +++++ ++ + + D+L G +SS +E Q+ I
Sbjct: 70 QLSPMISNLLMLLLERGRISVLPEISQSYGAFADELSGVIRPTLSSGLPLEAGQIEEI 127
>sp|Q2YUJ8|ATPD_STAAB ATP synthase subunit delta OS=Staphylococcus aureus (strain bovine
RF122 / ET3-1) GN=atpH PE=3 SV=1
Length = 179
Score = 44.3 bits (103), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 33/162 (20%), Positives = 79/162 (48%), Gaps = 20/162 (12%)
Query: 89 KPASGYAAALLDKALCHSSLEAVQRDVLKLSRLLKN--EQIQAVCADPFVGDKDKGQIVK 146
K A+ YA AL D +L ++LE + ++ ++ +K+ EQ++ V ++P + + +++
Sbjct: 3 KVANKYAKALFDVSLDTNNLETINEELTVINEAVKDKIEQLKMVDSNPTQTAEQRRELIN 62
Query: 147 ELLSSWKVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQ 206
+ +N Y+ ++ +L + +++++DV + FQ +Y+ + S ++ +++
Sbjct: 63 GVF--IDINPYIKNMMYVLADNRHISLIADVFKAFQSLYNGHYNQDFATIESTYELSQEE 120
Query: 207 LFHIAKRVQ----------------NLCGAAQVKIRNLIQEG 232
L I K V +L G +VK+ + +G
Sbjct: 121 LDKIVKLVTQQTKLSKVIVDTKINPDLIGGFRVKVGTTVLDG 162
>sp|Q8KGF0|ATPD_CHLTE ATP synthase subunit delta OS=Chlorobium tepidum (strain ATCC 49652
/ DSM 12025 / TLS) GN=atpH PE=3 SV=1
Length = 181
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 76/159 (47%), Gaps = 17/159 (10%)
Query: 94 YAAALLDKALCHSSLEAVQRDVLKLSRLLKNE-QIQAVCADPFVGDKDKGQIVKELLSSW 152
YA ALL+ A+ + LE V D+ K+ +L ++ P + K +I++E+ +
Sbjct: 10 YAVALLEVAVEGNFLEKVTEDLQKIQEVLSGSHELVLALKSPLINVDLKSKILEEIFRN- 68
Query: 153 KVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHI-- 210
KV+ +++L + + A+++ V+ EF + D+ G V SA K+ ++Q +
Sbjct: 69 KVDEKTMVFIKLLAHKKRAALLAGVISEFNALIDERNGVINADVKSAIKLSDEQAKELVN 128
Query: 211 ------AKRV-------QNLCGAAQVKIRNLIQEGVPSY 236
K++ +NL G VKI + I +G S+
Sbjct: 129 SLSVRTGKKIRAKMRLDENLIGGVTVKIGDTIIDGSISH 167
>sp|A5G9D5|ATPD_GEOUR ATP synthase subunit delta OS=Geobacter uraniireducens (strain Rf4)
GN=atpH PE=3 SV=1
Length = 180
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 64/127 (50%), Gaps = 1/127 (0%)
Query: 94 YAAALLDKALCHSSLEAVQRDVLKLSRLLK-NEQIQAVCADPFVGDKDKGQIVKELLSSW 152
YA AL+ ++ ++ + + +L N + +V ++P G + K +I+KE++
Sbjct: 10 YAKALVQIGAEEGQVDKFNSELTQFNTVLAANAGLTSVFSNPAYGIEAKREILKEIIGKL 69
Query: 153 KVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAK 212
++ +A L++L++R+++A + + E + DDL G ++S +EE Q+ I
Sbjct: 70 ALSESVAKFLQLLLDRSRLAFLPQITESYGNFADDLSGVVRPTLTSGLPLEESQIEEIKT 129
Query: 213 RVQNLCG 219
+ G
Sbjct: 130 SLTKTTG 136
>sp|Q9RGY4|ATPD_LACAC ATP synthase subunit delta OS=Lactobacillus acidophilus (strain
ATCC 700396 / NCK56 / N2 / NCFM) GN=atpH PE=2 SV=1
Length = 182
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 86 SHQKPASGYAAALLDKALCHSSLEAVQRDVLKLSRL-LKNEQIQAVCADPFVGDKDKGQI 144
S ++ A+ Y AL A + L+ V +++ L + + N + +V +DP + KDK I
Sbjct: 4 SREEVAARYGTALFGYAQDNKVLDTVYDEMMALKKAAIANPKFISVLSDPILSSKDKKSI 63
Query: 145 VKELLSSWKVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEE 204
+ + + + + L +L+E N+ A + D++++F +YD+ ++A K+++
Sbjct: 64 LTAVEKDF--SDEVQGFLNLLLEYNRFADLIDIIDQFSLLYDNENKIASGTATTAVKLDD 121
Query: 205 DQL 207
DQL
Sbjct: 122 DQL 124
>sp|Q7NCS2|ATPD_GLOVI ATP synthase subunit delta OS=Gloeobacter violaceus (strain PCC
7421) GN=atpH PE=3 SV=1
Length = 185
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 72/142 (50%), Gaps = 3/142 (2%)
Query: 88 QKPASGYAAALLDKALCHSSL-EAVQRDVLKLSRLLKNE-QIQAVCADPFVGDKDKGQIV 145
++ A YA AL + AL + L E D + ++++ + P + DK +++
Sbjct: 8 EQIAQRYAEALKELALSETGLLEQFGNDTDGMLQVMEESPDFERFLVVPIIAMADKKRLL 67
Query: 146 KELLSSWKVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEED 205
E KV+ Y+ L+++++R ++A++ V +QRI +L T + V SA + E+
Sbjct: 68 VEAFGG-KVHPYMLNFLQLMVDRRRIALLRPVCTSYQRILRELQQTTLAEVISAVPLSEE 126
Query: 206 QLFHIAKRVQNLCGAAQVKIRN 227
Q + +R++ A +V++R
Sbjct: 127 QASALIERIRRRTAAVRVELRR 148
>sp|Q46J56|ATPD_PROMT ATP synthase subunit delta OS=Prochlorococcus marinus (strain
NATL2A) GN=atpH PE=3 SV=1
Length = 182
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 134 PFVGDKDKGQIVKELLSSWKVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRV 193
P + K +++L SS S+L LL++L +R ++ +++ VLE IY + +
Sbjct: 52 PVLEVNQKKAALEKLFSSQVTPSFLN-LLKLLADRQRIGLLNSVLERLLEIYREQRNIAL 110
Query: 194 VFVSSAKKMEEDQLFHIAKRVQNLCGAAQVKI 225
++SA + EDQ + K+VQ++ G ++I
Sbjct: 111 ATITSASALNEDQQSELLKKVQSIAGTDNLEI 142
>sp|A2C4J6|ATPD_PROM1 ATP synthase subunit delta OS=Prochlorococcus marinus (strain
NATL1A) GN=atpH PE=3 SV=1
Length = 182
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 134 PFVGDKDKGQIVKELLSSWKVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRV 193
P + K +++L SS S+L LL++L +R ++ +++ VLE IY + +
Sbjct: 52 PVLEVNQKKAALEKLFSSQVTPSFLN-LLKLLADRQRIGLLNSVLERLLEIYREQRNIAL 110
Query: 194 VFVSSAKKMEEDQLFHIAKRVQNLCGAAQVKI 225
++SA + EDQ + K+VQ++ G ++I
Sbjct: 111 ATITSASALNEDQQSELLKKVQSIAGTDNLEI 142
>sp|Q5RD23|ATPO_PONAB ATP synthase subunit O, mitochondrial OS=Pongo abelii GN=ATP5O PE=2
SV=1
Length = 213
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 63/130 (48%)
Query: 94 YAAALLDKALCHSSLEAVQRDVLKLSRLLKNEQIQAVCADPFVGDKDKGQIVKELLSSWK 153
YA AL A + LE V++++L+++++LK ++ A +P+V K + + ++ + +
Sbjct: 41 YATALYSAASKQNKLEQVEKELLRVAQILKEPKVAAPVLNPYVKRSIKVKSLNDITAKER 100
Query: 154 VNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKR 213
+ L+ +L E +++ V+ F + G V+SA +EE L +
Sbjct: 101 FSPLTTNLINLLAENGRLSNTQGVVSAFSTMMSAHRGEVPCTVTSASPLEEATLSELKTV 160
Query: 214 VQNLCGAAQV 223
+++ QV
Sbjct: 161 LKSFLSQGQV 170
>sp|Q4G398|ATPD_EMIHU ATP synthase subunit delta, chloroplastic OS=Emiliania huxleyi
GN=atpD PE=3 SV=1
Length = 180
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 70/138 (50%), Gaps = 2/138 (1%)
Query: 89 KPASGYAAALLDKALCHSSLEAVQRDVLKLSRLLKN-EQIQAVCADPFVGDKDKGQIVKE 147
K A YA ALL+ A +SSL+ D+ +S+ L N ++ +P + K ++K+
Sbjct: 5 KIAVPYAEALLELANANSSLKETTNDINIVSQFLANSSDLKKFLGNPLITRDAKKGVLKD 64
Query: 148 LLSSWKVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQL 207
+L ++ L +L++R ++A + + +F + + V+S+ ++ Q
Sbjct: 65 VLGE-QIGEKTLTFLMLLVDRGRIAYLDGIAYKFLELSYKEESIEIAKVTSSVQLSAQQQ 123
Query: 208 FHIAKRVQNLCGAAQVKI 225
IA++++ + GA Q+K+
Sbjct: 124 KTIAEKLKKITGAKQIKL 141
>sp|B2B9A1|ATPO_RHIFE ATP synthase subunit O, mitochondrial OS=Rhinolophus ferrumequinum
GN=ATP5O PE=3 SV=1
Length = 213
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 63/130 (48%)
Query: 94 YAAALLDKALCHSSLEAVQRDVLKLSRLLKNEQIQAVCADPFVGDKDKGQIVKELLSSWK 153
YA AL A + LE V++++L++++LLK ++ A +P++ K + + ++ + K
Sbjct: 41 YATALYSAASKQNKLEQVEKELLRVAQLLKEPKMAASIMNPYIKRSIKVKSLNDMTTKEK 100
Query: 154 VNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKR 213
+ + L+ +L E ++ V+ F I G V++A ++E L +
Sbjct: 101 FSPLTSNLMNLLAENGRLNNTPGVISAFSTIMSVHRGEVPCSVTTASPLDEATLSELKTV 160
Query: 214 VQNLCGAAQV 223
+Q+ Q+
Sbjct: 161 LQSFLSKNQI 170
>sp|A1ALL4|ATPD_PELPD ATP synthase subunit delta OS=Pelobacter propionicus (strain DSM
2379) GN=atpH1 PE=3 SV=1
Length = 180
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 49/85 (57%)
Query: 126 QIQAVCADPFVGDKDKGQIVKELLSSWKVNSYLAALLRMLIERNKVAMVSDVLEEFQRIY 185
+I A ADP + + K I++EL+ S + + L +L+++N+VA S +++ + ++
Sbjct: 43 EIPAAFADPALSHERKKNIMRELVGSCACSELMGNFLLLLVDKNRVAFFSQIVKAYGQLA 102
Query: 186 DDLIGTRVVFVSSAKKMEEDQLFHI 210
D+ +G +++A +++ QL I
Sbjct: 103 DEHVGILRPVITTAFELDAVQLAAI 127
>sp|P37811|ATPD_BACSU ATP synthase subunit delta OS=Bacillus subtilis (strain 168)
GN=atpH PE=1 SV=1
Length = 181
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 72/138 (52%), Gaps = 3/138 (2%)
Query: 94 YAAALLDKALCHSSLEAVQRDVLKLSRLLKNEQ-IQAVCADPFVGDKDKGQIVKELLSSW 152
YA+AL D A + L V+ +++ + ++ +NE+ + V P V K ++++ S
Sbjct: 10 YASALFDIANESAQLNQVEEELIVVKQVFQNEKALNDVLNHPKVPAAKKKELIQNAFGSL 69
Query: 153 KVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAK 212
S L + +LI+R++ A+V ++ +EF ++ + T V S K + + ++ +++
Sbjct: 70 S-QSVLNTIF-LLIDRHRAAIVPELTDEFIKLANVARQTEDAIVYSVKPLTDAEMLPLSQ 127
Query: 213 RVQNLCGAAQVKIRNLIQ 230
G A ++IRN +Q
Sbjct: 128 VFAKKAGVASLRIRNEVQ 145
>sp|C4K230|ATPD_RICPU ATP synthase subunit delta OS=Rickettsia peacockii (strain Rustic)
GN=atpH PE=3 SV=1
Length = 184
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/124 (20%), Positives = 65/124 (52%), Gaps = 1/124 (0%)
Query: 93 GYAAALLDKALCHSSLEAVQRDVLKLSRLL-KNEQIQAVCADPFVGDKDKGQIVKELLSS 151
YA AL + A+ + + + ++ ++R++ N I+ P V DK V L +
Sbjct: 9 NYAVALFNNAMVDNIQDKIFEEITSINRIITDNFDIREFLFSPIVNKNDKINAVNSLAKN 68
Query: 152 WKVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIA 211
K+++ + L +L++ +++A++S++++ + + + ++V V SA K++ + I
Sbjct: 69 IKISTIVQNFLLLLVKNSRIAILSNIVDAYNTLLYESKNIKIVQVISANKLQPKEQEWIK 128
Query: 212 KRVQ 215
R++
Sbjct: 129 SRIE 132
>sp|Q92G85|ATPD_RICCN ATP synthase subunit delta OS=Rickettsia conorii (strain ATCC
VR-613 / Malish 7) GN=atpH PE=3 SV=1
Length = 184
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/124 (21%), Positives = 65/124 (52%), Gaps = 1/124 (0%)
Query: 93 GYAAALLDKALCHSSLEAVQRDVLKLSRLL-KNEQIQAVCADPFVGDKDKGQIVKELLSS 151
YA ALL+ A+ + + + ++ ++R++ N I+ P V DK V L +
Sbjct: 9 NYAVALLNNAMVDNIQDKIFEEITSINRIITDNFDIREFLFSPIVNKNDKINAVNSLAKN 68
Query: 152 WKVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIA 211
K+++ + L +L++ ++ A++S++++ + + + ++V V SA K++ + I
Sbjct: 69 IKISTIVQNFLLLLVKNSRTAILSNIVDAYNTLLYESKNIKIVQVISANKLQPKEQEWIK 128
Query: 212 KRVQ 215
R++
Sbjct: 129 SRIE 132
>sp|Q02849|ATPD_ANTSP ATP synthase subunit delta, chloroplastic OS=Antithamnion sp.
GN=atpD PE=3 SV=1
Length = 183
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 79/147 (53%), Gaps = 8/147 (5%)
Query: 89 KPASGYAAALLDKALCHSSLEAVQRDV-LKLSRLLKNEQIQAVCADPFVGDKDKGQIVKE 147
K A+ YA ALL+ +L +++++ D+ + L + K+ ++ ++P V D K ++ +
Sbjct: 8 KIANPYADALLELSLLNNAMDKASSDLSMILEVISKSADLKLFLSNPLVEDNLKKNVLNQ 67
Query: 148 LLSSWKVNSYLAALLRMLIERNKVAMVSDVLEE-FQRIY--DDLIGTRVVFVSSAKKMEE 204
L KV+ ++ L +L++R +++M+ ++++ F +Y + I T V+ +A + E
Sbjct: 68 LFKD-KVSDFIVKFLMVLVDRRRISMLHLIIDKYFSLVYKTESTILTEVI---TAIDLTE 123
Query: 205 DQLFHIAKRVQNLCGAAQVKIRNLIQE 231
+Q + +++ + VK+ I +
Sbjct: 124 EQEIALINKIKVMTKGKNVKLITTIDQ 150
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.126 0.355
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,111,642
Number of Sequences: 539616
Number of extensions: 2853228
Number of successful extensions: 15958
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 249
Number of HSP's that attempted gapping in prelim test: 15410
Number of HSP's gapped (non-prelim): 651
length of query: 237
length of database: 191,569,459
effective HSP length: 114
effective length of query: 123
effective length of database: 130,053,235
effective search space: 15996547905
effective search space used: 15996547905
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)