Query 040346
Match_columns 237
No_of_seqs 209 out of 1139
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 07:34:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040346.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040346hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK13436 F0F1 ATP synthase sub 100.0 4.4E-35 9.6E-40 247.6 18.8 146 88-235 5-151 (179)
2 KOG1662 Mitochondrial F1F0-ATP 100.0 5.2E-35 1.1E-39 246.7 14.9 155 81-235 24-180 (210)
3 PRK13434 F0F1 ATP synthase sub 100.0 1.1E-33 2.5E-38 239.8 19.0 144 87-235 3-147 (184)
4 COG0712 AtpH F0F1-type ATP syn 100.0 9.6E-34 2.1E-38 239.6 18.2 148 86-235 3-151 (178)
5 PRK08474 F0F1 ATP synthase sub 100.0 5.4E-32 1.2E-36 228.2 19.8 143 88-236 3-146 (176)
6 CHL00119 atpD ATP synthase CF1 100.0 4.4E-32 9.5E-37 230.0 18.7 149 86-235 4-153 (184)
7 TIGR01145 ATP_synt_delta ATP s 100.0 1.1E-31 2.3E-36 225.0 18.5 145 90-235 1-146 (172)
8 PRK13429 F0F1 ATP synthase sub 100.0 7.9E-31 1.7E-35 221.1 19.8 148 87-235 3-151 (181)
9 PRK13441 F0F1 ATP synthase sub 100.0 5.5E-31 1.2E-35 222.5 18.4 146 87-235 3-150 (180)
10 PRK13430 F0F1 ATP synthase sub 100.0 6.3E-30 1.4E-34 229.1 19.6 156 78-235 86-243 (271)
11 PRK05758 F0F1 ATP synthase sub 100.0 1.3E-29 2.9E-34 212.9 19.0 146 87-236 4-151 (177)
12 PRK13428 F0F1 ATP synthase sub 100.0 4.4E-29 9.6E-34 237.2 20.0 157 78-235 258-417 (445)
13 PF00213 OSCP: ATP synthase de 100.0 5.6E-33 1.2E-37 231.9 -7.5 146 90-236 1-148 (172)
14 PRK13431 F0F1 ATP synthase sub 100.0 1.1E-27 2.3E-32 202.9 17.6 138 87-231 4-146 (180)
15 TIGR03321 alt_F1F0_F0_B altern 98.4 1.4E-06 3.1E-11 77.1 9.4 43 192-235 177-219 (246)
16 PRK14474 F0F1 ATP synthase sub 97.3 0.0022 4.9E-08 57.1 9.9 45 189-234 173-218 (250)
17 PRK13430 F0F1 ATP synthase sub 97.1 0.0045 9.8E-08 55.8 9.7 61 107-168 26-87 (271)
18 PRK13428 F0F1 ATP synthase sub 95.9 0.05 1.1E-06 52.4 9.3 64 106-170 197-261 (445)
19 PRK06669 fliH flagellar assemb 87.2 14 0.0003 33.1 12.2 72 157-234 175-246 (281)
20 PF12685 SpoIIIAH: SpoIIIAH-li 76.8 9.5 0.00021 32.5 6.7 121 93-225 69-195 (196)
21 PF14674 FANCI_S1-cap: FANCI s 57.8 15 0.00032 25.2 3.1 50 97-151 4-53 (53)
22 PF02520 DUF148: Domain of unk 49.8 1.2E+02 0.0025 23.3 7.9 90 125-219 5-96 (113)
23 TIGR00962 atpA proton transloc 44.7 1.4E+02 0.0031 29.4 8.9 20 199-218 477-496 (501)
24 PF07560 DUF1539: Domain of Un 42.8 29 0.00062 28.0 3.1 33 126-158 71-103 (126)
25 PF02520 DUF148: Domain of unk 42.1 1.4E+02 0.0031 22.7 7.0 32 124-157 67-98 (113)
26 TIGR02606 antidote_CC2985 puta 41.8 1.3E+02 0.0027 21.4 6.8 51 153-218 5-55 (69)
27 PF14480 DNA_pol3_a_NI: DNA po 41.2 1.2E+02 0.0025 21.3 5.9 43 185-227 31-74 (76)
28 cd02413 40S_S3_KH K homology R 40.9 79 0.0017 23.2 5.1 39 189-227 29-72 (81)
29 PF13043 DUF3903: Domain of un 40.4 9 0.00019 24.4 -0.1 28 206-234 9-36 (40)
30 PF05823 Gp-FAR-1: Nematode fa 36.4 59 0.0013 26.8 4.2 86 124-219 53-138 (154)
31 PRK06824 translation initiatio 35.3 70 0.0015 25.5 4.2 31 189-219 52-82 (118)
32 COG0635 HemN Coproporphyrinoge 34.4 1.8E+02 0.004 27.8 7.8 62 173-234 67-135 (416)
33 PRK09019 translation initiatio 34.2 62 0.0014 25.4 3.7 29 191-219 44-72 (108)
34 PF04918 DltD_M: DltD central 32.4 1.2E+02 0.0026 25.0 5.4 63 121-184 49-111 (163)
35 PF12170 DNA_pol3_tau_5: DNA p 30.7 77 0.0017 25.9 3.9 44 186-230 48-93 (142)
36 PRK07764 DNA polymerase III su 30.3 6.7E+02 0.015 26.4 12.7 82 105-190 212-300 (824)
37 PF14675 FANCI_S1: FANCI solen 30.2 1.8E+02 0.004 25.5 6.5 90 125-214 114-213 (223)
38 CHL00059 atpA ATP synthase CF1 29.9 3.2E+02 0.007 26.9 8.7 117 94-218 350-476 (485)
39 PRK08208 coproporphyrinogen II 29.1 2.5E+02 0.0055 26.7 7.8 62 173-234 72-139 (430)
40 PF03693 RHH_2: Uncharacterise 28.9 2.3E+02 0.0051 20.7 6.7 51 153-218 8-58 (80)
41 KOG0994 Extracellular matrix g 28.2 4E+02 0.0086 29.7 9.3 66 95-165 1452-1520(1758)
42 PRK08446 coproporphyrinogen II 28.2 2.4E+02 0.0053 25.9 7.3 62 172-234 31-96 (350)
43 cd04927 ACT_ACR-like_2 Second 27.9 2.2E+02 0.0048 20.1 6.1 49 168-219 8-72 (76)
44 PRK05904 coproporphyrinogen II 27.7 2.9E+02 0.0062 25.7 7.7 36 198-234 66-101 (353)
45 PF04675 DNA_ligase_A_N: DNA l 27.6 3.3E+02 0.0072 22.0 7.5 44 135-179 129-172 (177)
46 PF12069 DUF3549: Protein of u 27.4 4.1E+02 0.0089 25.0 8.5 96 85-183 207-310 (340)
47 TIGR01609 PF_unchar_267 Plasmo 27.1 2.3E+02 0.0049 23.5 6.0 41 125-167 102-142 (146)
48 PF04826 Arm_2: Armadillo-like 27.1 1.9E+02 0.0041 25.8 6.1 63 157-219 176-243 (254)
49 TIGR00439 ftsX putative protei 26.4 1.9E+02 0.004 26.5 6.1 53 173-225 47-99 (309)
50 PF12645 HTH_16: Helix-turn-he 25.7 2.3E+02 0.005 19.9 5.2 46 166-217 7-60 (65)
51 cd07680 F-BAR_PACSIN1 The F-BA 25.6 4.4E+02 0.0095 23.7 8.2 130 87-218 31-181 (258)
52 PF15603 Imm45: Immunity prote 25.6 1.1E+02 0.0024 22.7 3.7 27 201-227 55-81 (82)
53 cd08809 CARD_CARD9 Caspase act 25.5 1.3E+02 0.0029 22.7 4.0 44 121-165 30-74 (86)
54 PF09688 Wx5_PLAF3D7: Protein 25.2 2.5E+02 0.0055 23.2 6.1 41 125-167 103-143 (147)
55 PRK14951 DNA polymerase III su 25.2 1.7E+02 0.0038 29.6 6.1 71 160-231 499-569 (618)
56 PRK07738 flagellar protein Fla 23.9 1.1E+02 0.0025 24.2 3.7 34 200-233 41-74 (117)
57 TIGR02670 cas_csx8 CRISPR-asso 23.8 1.5E+02 0.0032 28.8 5.0 67 124-190 71-146 (441)
58 PF02152 FolB: Dihydroneopteri 23.7 3.2E+02 0.0069 20.5 6.3 46 156-201 51-97 (113)
59 COG0023 SUI1 Translation initi 23.6 1.2E+02 0.0027 23.6 3.7 31 189-219 37-67 (104)
60 PRK08868 flagellar protein Fla 23.4 1E+02 0.0022 25.5 3.3 34 200-233 66-99 (144)
61 PF09384 UTP15_C: UTP15 C term 23.2 4.1E+02 0.0088 21.5 8.0 78 91-190 31-112 (148)
62 PRK00411 cdc6 cell division co 23.2 5.8E+02 0.013 23.3 9.8 55 153-216 293-351 (394)
63 TIGR01158 SUI1_rel translation 23.1 1.4E+02 0.003 23.0 3.9 31 189-219 35-65 (101)
64 cd00256 VATPase_H VATPase_H, r 23.0 6E+02 0.013 24.6 9.0 80 92-171 52-134 (429)
65 PRK11026 ftsX cell division AB 22.7 2.4E+02 0.0053 25.7 6.1 53 173-225 47-99 (309)
66 PRK11245 folX D-erythro-7,8-di 22.4 3.1E+02 0.0067 21.2 5.9 46 156-201 58-103 (120)
67 PRK09281 F0F1 ATP synthase sub 22.0 4.7E+02 0.01 25.9 8.3 20 199-218 478-497 (502)
68 PRK13912 nuclease NucT; Provis 22.0 4.5E+02 0.0098 21.6 7.2 68 157-231 10-81 (177)
69 PRK11702 hypothetical protein; 21.9 4E+02 0.0087 20.9 7.2 39 191-230 64-104 (108)
70 COG0056 AtpA F0F1-type ATP syn 21.3 1.5E+02 0.0032 29.2 4.5 115 96-218 373-497 (504)
71 PF06918 DUF1280: Protein of u 21.2 1.2E+02 0.0026 26.7 3.6 66 143-219 17-82 (224)
72 PRK05628 coproporphyrinogen II 20.9 5E+02 0.011 24.0 8.0 62 173-234 38-106 (375)
73 PRK07165 F0F1 ATP synthase sub 20.8 3.2E+02 0.007 27.1 6.8 45 124-168 389-440 (507)
74 cd02685 MIT_C MIT_C; domain fo 20.7 4.6E+02 0.0099 21.7 6.7 45 189-233 50-95 (148)
75 KOG2035 Replication factor C, 20.5 1.9E+02 0.0042 27.0 4.8 41 188-230 125-165 (351)
76 KOG2038 CAATT-binding transcri 20.2 8.4E+02 0.018 25.9 9.7 115 91-219 228-351 (988)
77 PF03937 Sdh5: Flavinator of s 20.2 2.3E+02 0.0051 20.2 4.4 52 88-147 18-72 (74)
78 PRK11593 folB bifunctional dih 20.0 4.1E+02 0.0089 20.4 6.2 46 156-201 54-99 (119)
79 PRK14958 DNA polymerase III su 20.0 3.3E+02 0.0072 26.8 6.8 43 188-231 411-455 (509)
No 1
>PRK13436 F0F1 ATP synthase subunit delta; Provisional
Probab=100.00 E-value=4.4e-35 Score=247.64 Aligned_cols=146 Identities=21% Similarity=0.370 Sum_probs=143.0
Q ss_pred chhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc-cHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 040346 88 QKPASGYAAALLDKALCHSSLEAVQRDVLKLSRLLK-NEQIQAVCADPFVGDKDKGQIVKELLSSWKVNSYLAALLRMLI 166 (237)
Q Consensus 88 ~~iA~rYAkALfe~A~e~~~le~v~~eL~~l~~ll~-~~~l~~~L~nP~i~~e~K~~lL~~l~~~~~~s~~~~nFL~lLi 166 (237)
..+|++||+|||++|.++|.+++|+++|..+.+++. +++|+.+|.||.++.++|.++++++|++ ++++.+.|||++|+
T Consensus 5 ~~va~~YA~AL~~~a~e~~~l~~v~~~l~~~~~~~~~~~~l~~~l~~P~i~~~~K~~~l~~l~~~-~~~~~~~nfl~ll~ 83 (179)
T PRK13436 5 NKNIYNYAEALFDIANEENNVEKYINEVFKIIEILKNNKDLIKLLTSYFIDKEEKFKIIDKIFSA-KIDIYLVNFLKILA 83 (179)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcChHHHHHHcCCCCCHHHHHHHHHHHHhc-cCCHHHHHHHHHHH
Confidence 478999999999999999999999999999999998 9999999999999999999999999997 79999999999999
Q ss_pred HcCccchHHHHHHHHHHHHHHHCCeEEEEEEeccCCCHHHHHHHHHHHHHHhCCceeEEEeeeCCCCCC
Q 040346 167 ERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCGAAQVKIRNLIQEGVPS 235 (237)
Q Consensus 167 e~~Rl~lL~~I~~~f~~l~~~~~gi~~a~V~SA~~Lseeq~~kI~~~L~kk~g~k~V~L~~~VDpSLI~ 235 (237)
+++|+.+|++|+++|.++++++.|++.|+|+||.||+++|+++|.+.|++++| ++|+++++|||+|||
T Consensus 84 ~~~R~~~l~~I~~~f~~~~~~~~~~~~~~V~sA~~Ls~~~~~~i~~~l~~~~g-~~v~l~~~vDpslIG 151 (179)
T PRK13436 84 KNNLFIYIKQILKKFVKLSNEKLNITYGEIYTTEPLSEVQISRFESKLSKKLN-KKVHLVNKIDPKLIA 151 (179)
T ss_pred HCChHHHHHHHHHHHHHHHHHHcCeEEEEEEecCCCCHHHHHHHHHHHHHHHC-CeEEEEeecCHHHcC
Confidence 99999999999999999999999999999999999999999999999999999 799999999999994
No 2
>KOG1662 consensus Mitochondrial F1F0-ATP synthase, subunit OSCP/ATP5 [Energy production and conversion]
Probab=100.00 E-value=5.2e-35 Score=246.75 Aligned_cols=155 Identities=21% Similarity=0.382 Sum_probs=151.5
Q ss_pred CCCCCccchhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc-cHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHH
Q 040346 81 SASPNSHQKPASGYAAALLDKALCHSSLEAVQRDVLKLSRLLK-NEQIQAVCADPFVGDKDKGQIVKELLSSWKVNSYLA 159 (237)
Q Consensus 81 ~~~p~~~~~iA~rYAkALfe~A~e~~~le~v~~eL~~l~~ll~-~~~l~~~L~nP~i~~e~K~~lL~~l~~~~~~s~~~~ 159 (237)
.+||++..++.++||.|||++|..++++|.++.||+.+.++++ +|+|.+|+.||.++.++|..+|+++++..++.+.+.
T Consensus 24 v~pPVql~G~eG~YAtaLY~AA~K~~~ld~vetdL~kl~~v~k~~pk~~~f~~nP~l~~~~k~~~i~di~~~~~~~~~t~ 103 (210)
T KOG1662|consen 24 VKPPVQLYGLEGRYATALYSAAVKNSKLDQVETDLNKLEQVLKTDPKFAQFVLNPTLTREKKKTAIDDIVEKLKLAPLTK 103 (210)
T ss_pred CCCCeEEecccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChHHHHHhcCCccchHHHHHHHHHHHHHhcccHhHH
Confidence 7999999999999999999999999999999999999999999 999999999999999999999999999888999999
Q ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHHCCeEEEEEEeccCCCHHHHHHHHHHHHHHhC-CceeEEEeeeCCCCCC
Q 040346 160 ALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCG-AAQVKIRNLIQEGVPS 235 (237)
Q Consensus 160 nFL~lLie~~Rl~lL~~I~~~f~~l~~~~~gi~~a~V~SA~~Lseeq~~kI~~~L~kk~g-~k~V~L~~~VDpSLI~ 235 (237)
|||.+|+||||+..+.+|+.+|..+++.++|.+.|+|+||.||++.|.++|++.|++++| ++++.++++|||||+|
T Consensus 104 NflnlLaeNgRL~~l~~Ivk~F~~lm~ahrGev~~~VtSa~pLd~~~~k~l~~~l~k~l~~gk~l~v~~~vdPSI~G 180 (210)
T KOG1662|consen 104 NFLNLLAENGRLNNLTEIVKAFETLMNAHRGEVKVEVTSAEPLDAKQLKQLEKALQKILGGGKKLKVENKVDPSIIG 180 (210)
T ss_pred HHHHHHHHcCchhhHHHHHHHHHHHHHHhCCceEEEEEecccCChHHHHHHHHHHHHHhcCCceEEEEeecChhhhc
Confidence 999999999999999999999999999999999999999999999999999999999776 5779999999999994
No 3
>PRK13434 F0F1 ATP synthase subunit delta; Provisional
Probab=100.00 E-value=1.1e-33 Score=239.82 Aligned_cols=144 Identities=19% Similarity=0.265 Sum_probs=138.8
Q ss_pred cchhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc-cHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 040346 87 HQKPASGYAAALLDKALCHSSLEAVQRDVLKLSRLLK-NEQIQAVCADPFVGDKDKGQIVKELLSSWKVNSYLAALLRML 165 (237)
Q Consensus 87 ~~~iA~rYAkALfe~A~e~~~le~v~~eL~~l~~ll~-~~~l~~~L~nP~i~~e~K~~lL~~l~~~~~~s~~~~nFL~lL 165 (237)
...+|+|||+|||+ +.|.+++|.++|..+.+++. +++|+.+|.||.++.++|.++|.+++++ ++++.+.|||++|
T Consensus 3 ~~~va~rYA~AL~~---~~~~l~~v~~~l~~l~~~~~~~~~l~~~l~~P~i~~~~K~~~l~~~~~~-~~~~~~~nfl~lL 78 (184)
T PRK13434 3 DSGVSKVYASALLG---AANSPEEVEQELGDLVQLLFKDEKIRNFFLSPTVSPEEKEQTLAKNLRG-KISDITLNFLGVL 78 (184)
T ss_pred chhhHHHHHHHHHH---hcCCHHHHHHHHHHHHHHHHcCHHHHHHHhCCCCCHHHHHHHHHHHHHc-cCCHHHHHHHHHH
Confidence 35799999999999 56899999999999999887 9999999999999999999999999976 8999999999999
Q ss_pred HHcCccchHHHHHHHHHHHHHHHCCeEEEEEEeccCCCHHHHHHHHHHHHHHhCCceeEEEeeeCCCCCC
Q 040346 166 IERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCGAAQVKIRNLIQEGVPS 235 (237)
Q Consensus 166 ie~~Rl~lL~~I~~~f~~l~~~~~gi~~a~V~SA~~Lseeq~~kI~~~L~kk~g~k~V~L~~~VDpSLI~ 235 (237)
++|+|+.+|++|+++|.+++++++|++.|+|+||.||+++|+++|++.|++++| ++|+++++|||+|||
T Consensus 79 ~e~~R~~~l~~I~~~f~~l~~~~~~~~~~~V~sA~~Ls~~q~~~l~~~L~k~~g-~~v~l~~~vDpsLIG 147 (184)
T PRK13434 79 LNKGRFIYLPEIQKDFTVELDKKKGRVRAQIVSYPSLEPAQVDKLGSILSEKFK-SEFILEVSEDKNLLG 147 (184)
T ss_pred HHCCcHHHHHHHHHHHHHHHHHHcCeEEEEEEEcCCCCHHHHHHHHHHHHHHHC-CEeEEEeeeChHHcC
Confidence 999999999999999999999999999999999999999999999999999999 899999999999994
No 4
>COG0712 AtpH F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) [Energy production and conversion]
Probab=100.00 E-value=9.6e-34 Score=239.60 Aligned_cols=148 Identities=24% Similarity=0.409 Sum_probs=143.1
Q ss_pred ccchhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc-cHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 040346 86 SHQKPASGYAAALLDKALCHSSLEAVQRDVLKLSRLLK-NEQIQAVCADPFVGDKDKGQIVKELLSSWKVNSYLAALLRM 164 (237)
Q Consensus 86 ~~~~iA~rYAkALfe~A~e~~~le~v~~eL~~l~~ll~-~~~l~~~L~nP~i~~e~K~~lL~~l~~~~~~s~~~~nFL~l 164 (237)
....+|++||+|||++|.|+|++++|+++|..+.++++ +|+|+++|.+|.++.++|.+++.++|++ ..++++.|||.+
T Consensus 3 ~~~~va~~YA~ALf~~A~e~~~~~~~~~~L~~~~~i~~~~~~l~~ll~sp~~~~~~k~~li~~i~~~-~~~~~~~nfL~l 81 (178)
T COG0712 3 ELSTVARRYAKALFELAEEKGQLEEVEEELTFLAEILKNSPKLKQLLSSPAVSAEDKKELLISIFKK-IGDPLLQNFLRL 81 (178)
T ss_pred hhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCHhHHHHhcCcCCCHHHHHHHHHHHHhc-cCcHHHHHHHHH
Confidence 45679999999999999999999999999999999999 7899999999999999999999999997 555999999999
Q ss_pred HHHcCccchHHHHHHHHHHHHHHHCCeEEEEEEeccCCCHHHHHHHHHHHHHHhCCceeEEEeeeCCCCCC
Q 040346 165 LIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCGAAQVKIRNLIQEGVPS 235 (237)
Q Consensus 165 Lie~~Rl~lL~~I~~~f~~l~~~~~gi~~a~V~SA~~Lseeq~~kI~~~L~kk~g~k~V~L~~~VDpSLI~ 235 (237)
|++|+|+.++++|+++|..++++++|++.|+|+||.||+++|+++|.++|++++| ++|+++++|||||||
T Consensus 82 l~en~Rl~~l~~I~~~~~~l~~~~~~~~~a~V~SA~~Ls~~q~~~l~~~l~k~~~-~~v~i~~~VD~sliG 151 (178)
T COG0712 82 LAENKRLNLLPEILEEFLKLAAESRGIVEAEVTSAFELSDEQLTKLEAKLEKKFG-KKVKLNNKIDPSLIG 151 (178)
T ss_pred HHHccchhhHHHHHHHHHHHHHHhcCceEEEEEEcCCCCHHHHHHHHHHHHHHhC-CCceEEeeeCHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999 899999999999995
No 5
>PRK08474 F0F1 ATP synthase subunit delta; Validated
Probab=100.00 E-value=5.4e-32 Score=228.19 Aligned_cols=143 Identities=17% Similarity=0.306 Sum_probs=137.5
Q ss_pred chhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 040346 88 QKPASGYAAALLDKALCHSSLEAVQRDVLKLSRLLKNEQIQAVCADPFVGDKDKGQIVKELLSSWKVNSYLAALLRMLIE 167 (237)
Q Consensus 88 ~~iA~rYAkALfe~A~e~~~le~v~~eL~~l~~ll~~~~l~~~L~nP~i~~e~K~~lL~~l~~~~~~s~~~~nFL~lLie 167 (237)
..+|+|||+|||++|. +|.+++|.++|..+..++++++|+.+|.||.++.++|.+++++++++ .++.+.|||++|++
T Consensus 3 ~~va~~YA~ALf~~a~-~~~l~~v~~~l~~l~~~~~~~~l~~~l~~P~i~~~~K~~vi~~~~~~--~~~~~~nFL~vLi~ 79 (176)
T PRK08474 3 ELIAKRYAKALLSSLS-SDELNDIYSNLKILSSAFADEKFKEIISSPEISKEQKIEFLLSFVDN--ANAKFQNFIKLLAE 79 (176)
T ss_pred hhhHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHCChhHHHHHhCCCCCHHHHHHHHHHHHhc--cCHHHHHHHHHHHH
Confidence 4689999999999985 79999999999999999999999999999999999999999999985 58999999999999
Q ss_pred cCccchHHHHHHHHHHHHHHHCCeEEEEEEeccCCCHHHHHHHHHHHHHHhCCceeEEEeeeCCCCC-CC
Q 040346 168 RNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCGAAQVKIRNLIQEGVP-SY 236 (237)
Q Consensus 168 ~~Rl~lL~~I~~~f~~l~~~~~gi~~a~V~SA~~Lseeq~~kI~~~L~kk~g~k~V~L~~~VDpSLI-~~ 236 (237)
|+|+.+|++|+++|.+++++.+|++.|+|+||.|||++|+++|++.|++++| ++|++++.||| | ||
T Consensus 80 n~R~~~L~~I~~~f~~~~~~~~~~~~~~V~SA~~Ls~~q~~~i~~~l~~~~g-~~v~l~~~vD~--IGG~ 146 (176)
T PRK08474 80 NKRLELIPAIAKELERQIALKENEYVGVVYSNEKLSEETLKKLEEKLSKKFN-AKIKLKQKKSD--YDGI 146 (176)
T ss_pred CChHHHHHHHHHHHHHHHHHHcCeEEEEEEECccCCHHHHHHHHHHHHHHhC-CeEEEEEEEcC--CCCE
Confidence 9999999999999999999999999999999999999999999999999999 79999999999 6 54
No 6
>CHL00119 atpD ATP synthase CF1 delta subunit; Validated
Probab=100.00 E-value=4.4e-32 Score=229.99 Aligned_cols=149 Identities=19% Similarity=0.362 Sum_probs=144.1
Q ss_pred ccchhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc-cHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 040346 86 SHQKPASGYAAALLDKALCHSSLEAVQRDVLKLSRLLK-NEQIQAVCADPFVGDKDKGQIVKELLSSWKVNSYLAALLRM 164 (237)
Q Consensus 86 ~~~~iA~rYAkALfe~A~e~~~le~v~~eL~~l~~ll~-~~~l~~~L~nP~i~~e~K~~lL~~l~~~~~~s~~~~nFL~l 164 (237)
....+|++||+|||++|.++|.+++|.++|..+.++++ +++|+++|.||.++.++|.+++++++++ ++++.+.|||++
T Consensus 4 ~~~~va~~YA~AL~~~a~e~~~l~~v~~~l~~l~~~~~~~~~l~~~l~~p~i~~~~K~~ii~~~~~~-~~~~~~~nfl~~ 82 (184)
T CHL00119 4 LVSKIAQPYAEALLEFAKEKNIMEQITADIQLILTFLNESPELKKFLANPLISKNAKKEVIKKTFGS-QINENTLKFLMV 82 (184)
T ss_pred hHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCHHHHHHHhCCCCCHHHHHHHHHHHHHh-ccCHHHHHHHHH
Confidence 45679999999999999999999999999999999998 9999999999999999999999999987 899999999999
Q ss_pred HHHcCccchHHHHHHHHHHHHHHHCCeEEEEEEeccCCCHHHHHHHHHHHHHHhCCceeEEEeeeCCCCCC
Q 040346 165 LIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCGAAQVKIRNLIQEGVPS 235 (237)
Q Consensus 165 Lie~~Rl~lL~~I~~~f~~l~~~~~gi~~a~V~SA~~Lseeq~~kI~~~L~kk~g~k~V~L~~~VDpSLI~ 235 (237)
|++|+|+.++++|+++|.+++++.+|++.|+|+||.||+++|+++|.+.|++++|.+++.+.++|||+|||
T Consensus 83 L~~~~r~~~l~~I~~~f~~~~~~~~~~~~~~v~sa~~L~~~~~~~l~~~L~~~~~~~~v~l~~~vD~~lig 153 (184)
T CHL00119 83 LVDRGRIALLDAIIEKYLELVYKLASIKIAEVSTAVPLSSAQEEALIEKLKEMTNAKEIKLVITVDPSLIG 153 (184)
T ss_pred HHHcCcHHHHHHHHHHHHHHHHHhcCeEEEEEEeccCCCHHHHHHHHHHHHHHhCCCeEEEEeeeChHHhC
Confidence 99999999999999999999999999999999999999999999999999999986689999999999994
No 7
>TIGR01145 ATP_synt_delta ATP synthase, F1 delta subunit. This model describes the ATP synthase delta subunit in bacteria, mitochondria, and chloroplasts. It is sometimes called OSCP for Oligomycin Sensitivity Conferring Protein. F1/F0-ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Delta subunit belongs to the F1 cluster or sector and functionally implicated in the overall stability of the complex. Expression of truncated forms of this subunit results in low ATPase activity.
Probab=100.00 E-value=1.1e-31 Score=225.01 Aligned_cols=145 Identities=28% Similarity=0.402 Sum_probs=140.8
Q ss_pred hhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc-cHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 040346 90 PASGYAAALLDKALCHSSLEAVQRDVLKLSRLLK-NEQIQAVCADPFVGDKDKGQIVKELLSSWKVNSYLAALLRMLIER 168 (237)
Q Consensus 90 iA~rYAkALfe~A~e~~~le~v~~eL~~l~~ll~-~~~l~~~L~nP~i~~e~K~~lL~~l~~~~~~s~~~~nFL~lLie~ 168 (237)
+|++||+|||++|.+.|+++.|+++|..+.++++ +++|+++|.||.++.++|.++++++|++ ++++.+.|||++|+++
T Consensus 1 va~~YA~AL~~~a~e~~~l~~v~~~l~~i~~~~~~~~~l~~~l~~p~i~~~~K~~~l~~l~~~-~~~~~~~nfl~~l~~~ 79 (172)
T TIGR01145 1 VARPYAKALFEIANEKSSLEEWGEMLNFVKEVLKNNKELKKFLSNPLISAEKKKEFIKNVFGE-QLDESSLNLLLLLAEN 79 (172)
T ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhCCHHHHHHHhCCCCCHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHC
Confidence 5899999999999999999999999999999999 8999999999999999999999999987 8999999999999999
Q ss_pred CccchHHHHHHHHHHHHHHHCCeEEEEEEeccCCCHHHHHHHHHHHHHHhCCceeEEEeeeCCCCCC
Q 040346 169 NKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCGAAQVKIRNLIQEGVPS 235 (237)
Q Consensus 169 ~Rl~lL~~I~~~f~~l~~~~~gi~~a~V~SA~~Lseeq~~kI~~~L~kk~g~k~V~L~~~VDpSLI~ 235 (237)
+|+.++++|+++|.+++++..|++.|+|+||.||+++|+++|.+.|++++|.++|++.++|||+|||
T Consensus 80 ~r~~~l~~I~~~~~~~~~~~~~~~~~~v~sa~~L~~~~~~~l~~~l~~~~~~~~v~~~~~vd~~lig 146 (172)
T TIGR01145 80 GRLAALPDILDQFLKLSYEAQQTADVEVISAKPLTEDQQAKIAEKLEKITGAAKVKLNCKVDKDLIG 146 (172)
T ss_pred CcHHHHHHHHHHHHHHHHHhcCEEEEEEEEccCCCHHHHHHHHHHHHHHhCCCeEEEEEeECHHHhC
Confidence 9999999999999999999999999999999999999999999999999993399999999999994
No 8
>PRK13429 F0F1 ATP synthase subunit delta; Provisional
Probab=99.97 E-value=7.9e-31 Score=221.12 Aligned_cols=148 Identities=20% Similarity=0.388 Sum_probs=143.2
Q ss_pred cchhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc-cHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 040346 87 HQKPASGYAAALLDKALCHSSLEAVQRDVLKLSRLLK-NEQIQAVCADPFVGDKDKGQIVKELLSSWKVNSYLAALLRML 165 (237)
Q Consensus 87 ~~~iA~rYAkALfe~A~e~~~le~v~~eL~~l~~ll~-~~~l~~~L~nP~i~~e~K~~lL~~l~~~~~~s~~~~nFL~lL 165 (237)
...++++||+|||++|.++|++++|+++|..+.++++ +++|+.+|.||.++.++|.++|++++++.++++.+.|||++|
T Consensus 3 ~~~ia~~YA~AL~~~a~~~~~l~~~~~~l~~i~~~~~~~~~~~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfl~~l 82 (181)
T PRK13429 3 LNAIARRYAKALFQLAKEKGQLDSVYEELKQLAELLEDSPELRDALSNPVLSAEEKKAVLEKLLGKLKVSPEVLNFLKLL 82 (181)
T ss_pred cchhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCHHHHHHHhCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 3578999999999999999999999999999999998 999999999999999999999999998744999999999999
Q ss_pred HHcCccchHHHHHHHHHHHHHHHCCeEEEEEEeccCCCHHHHHHHHHHHHHHhCCceeEEEeeeCCCCCC
Q 040346 166 IERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCGAAQVKIRNLIQEGVPS 235 (237)
Q Consensus 166 ie~~Rl~lL~~I~~~f~~l~~~~~gi~~a~V~SA~~Lseeq~~kI~~~L~kk~g~k~V~L~~~VDpSLI~ 235 (237)
++++|+.++++|+++|.++++++.|++.|+|+||.||+++++++|.+.|++++| +.+.++++|||+|||
T Consensus 83 ~~~~r~~~l~~I~~~f~~~~~~~~~~~~~~v~sa~~ls~~~~~~l~~~L~~~~~-~~~~~~~~vd~slig 151 (181)
T PRK13429 83 ADRRRLGILPEIAARYLELADEQKGIVRATVTSAVPLSEAQQEAIRQKLEKMTG-KKVELDTAVDPSLIG 151 (181)
T ss_pred HHCCcHHHHHHHHHHHHHHHHHhCCEEEEEEEEeecCCHHHHHHHHHHHHHHHC-CEEEEEeeeChhhhC
Confidence 999999999999999999999999999999999999999999999999999999 899999999999994
No 9
>PRK13441 F0F1 ATP synthase subunit delta; Provisional
Probab=99.97 E-value=5.5e-31 Score=222.45 Aligned_cols=146 Identities=16% Similarity=0.217 Sum_probs=138.1
Q ss_pred cchhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccHHHHHHhcCCCCCHHHHHHHHHHHhc--CCCCCHHHHHHHHH
Q 040346 87 HQKPASGYAAALLDKALCHSSLEAVQRDVLKLSRLLKNEQIQAVCADPFVGDKDKGQIVKELLS--SWKVNSYLAALLRM 164 (237)
Q Consensus 87 ~~~iA~rYAkALfe~A~e~~~le~v~~eL~~l~~ll~~~~l~~~L~nP~i~~e~K~~lL~~l~~--~~~~s~~~~nFL~l 164 (237)
...+|++||+|||++|.+.|.+++|.++|..+.++++ +++.+|.||.++.++|.++|+.+++ +.++++.+.|||++
T Consensus 3 ~~~va~~YA~AL~~~a~e~~~l~~v~~~l~~~~~~~~--~~~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~~~nfl~v 80 (180)
T PRK13441 3 YSAIASKYARALLNVAIELEKEEEYGEFLDLVCQIYE--SAKEFFDNPIVKPEKKVSLIKEIMKEFGQEMDEFFENFLNL 80 (180)
T ss_pred cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--HHHHHHhCCCCCHHHHHHHHHHHHHHhccccCHHHHHHHHH
Confidence 4579999999999999999999999999999999998 3478999999999999999999974 22689999999999
Q ss_pred HHHcCccchHHHHHHHHHHHHHHHCCeEEEEEEeccCCCHHHHHHHHHHHHHHhCCceeEEEeeeCCCCCC
Q 040346 165 LIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCGAAQVKIRNLIQEGVPS 235 (237)
Q Consensus 165 Lie~~Rl~lL~~I~~~f~~l~~~~~gi~~a~V~SA~~Lseeq~~kI~~~L~kk~g~k~V~L~~~VDpSLI~ 235 (237)
|++|+|+.+|++|+++|..++++++|++.|+|+||.||+++|+++|.+.|++++| ++|+++++|||+|||
T Consensus 81 L~~~~R~~~l~~I~~~f~~l~~~~~~~~~~~V~sA~~L~~~~~~~i~~~l~k~~~-~~v~l~~~vD~sliG 150 (180)
T PRK13441 81 VFENKRQKLLPQIRALFEYEKILSEQKVPVNLTTAHELSDEELKLLRKFVRKYVL-RDPVFEETIDESLIA 150 (180)
T ss_pred HHHCChHHHHHHHHHHHHHHHHHhcCeeEEEEEecccCCHHHHHHHHHHHHHHHC-CcceEEeeeChHHhC
Confidence 9999999999999999999999999999999999999999999999999999999 899999999999994
No 10
>PRK13430 F0F1 ATP synthase subunit delta; Provisional
Probab=99.97 E-value=6.3e-30 Score=229.07 Aligned_cols=156 Identities=19% Similarity=0.285 Sum_probs=149.4
Q ss_pred CCCCCCCC-ccchhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc-cHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCC
Q 040346 78 TPKSASPN-SHQKPASGYAAALLDKALCHSSLEAVQRDVLKLSRLLK-NEQIQAVCADPFVGDKDKGQIVKELLSSWKVN 155 (237)
Q Consensus 78 ~~~~~~p~-~~~~iA~rYAkALfe~A~e~~~le~v~~eL~~l~~ll~-~~~l~~~L~nP~i~~e~K~~lL~~l~~~~~~s 155 (237)
..+|..|. ....+...+.+|||++|+++|.+++|++||..+.+++. +++|+.+|.||.++.++|.+++.++|++ +++
T Consensus 86 ~~rWs~~~dl~~~~e~l~~~ALf~~A~e~g~ld~v~~eL~~~~~~l~~~~~l~~~L~~p~i~~e~K~~ll~~l~~~-~~~ 164 (271)
T PRK13430 86 RQRWSRPRDLADALEELGVRALLASAEAQGALDDVEDELFRLGRILASNPELRLALSDRAAPAEAKRELLARLLYG-KVT 164 (271)
T ss_pred HhhccCchhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcCHHHHHHHhCCCCCHHHHHHHHHHHHhc-cCC
Confidence 45576665 56889999999999999999999999999999999998 9999999999999999999999999987 799
Q ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHCCeEEEEEEeccCCCHHHHHHHHHHHHHHhCCceeEEEeeeCCCCCC
Q 040346 156 SYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCGAAQVKIRNLIQEGVPS 235 (237)
Q Consensus 156 ~~~~nFL~lLie~~Rl~lL~~I~~~f~~l~~~~~gi~~a~V~SA~~Lseeq~~kI~~~L~kk~g~k~V~L~~~VDpSLI~ 235 (237)
+.+.||+.+|++++|+.++++|+++|.+++++++|++.|+|+||.||+++|+++|++.|+++|| ++|+++++|||+|||
T Consensus 165 ~~~~nfl~~lv~~~R~~~l~~i~~~f~~l~~~~~~~~~a~VtSA~pLs~~q~~~L~~~L~k~~g-~~V~l~~~VDpsLIG 243 (271)
T PRK13430 165 PVTERLAEQAVGRPRGRSIEEGLDELSNLAAARRGRSVATVTTAVPLSDEQKQRLAAALSRIYG-RPVHLNSEVDPSVLG 243 (271)
T ss_pred HHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHcCeeEEEEEecCCCCHHHHHHHHHHHHHHHC-CceEEEeeECccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999 899999999999995
No 11
>PRK05758 F0F1 ATP synthase subunit delta; Validated
Probab=99.97 E-value=1.3e-29 Score=212.93 Aligned_cols=146 Identities=23% Similarity=0.374 Sum_probs=140.3
Q ss_pred cchhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc-cHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 040346 87 HQKPASGYAAALLDKALCHSSLEAVQRDVLKLSRLLK-NEQIQAVCADPFVGDKDKGQIVKELLSSWKVNSYLAALLRML 165 (237)
Q Consensus 87 ~~~iA~rYAkALfe~A~e~~~le~v~~eL~~l~~ll~-~~~l~~~L~nP~i~~e~K~~lL~~l~~~~~~s~~~~nFL~lL 165 (237)
...++++||+|||++|.++|.++.|+++|.. .+++. +++|+.+|.||.++.++|.++|++++++ .++.+.|||.+|
T Consensus 4 ~~~~a~~YA~AL~~~a~~~~~~~~v~~~l~~-~~~~~~~~~~~~~l~~p~i~~~~K~~~l~~~~~~--~~~~~~nfL~~l 80 (177)
T PRK05758 4 LSTVARPYAKALFEVALEKGSLDAWSEELTF-LAEVAENEDLAALLSSPLVSAEQKKKLLAAVFKS--LSEYVQNFLKVL 80 (177)
T ss_pred chhhHHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHHhcCHHHHHHHhCCCCCHHHHHHHHHHHHcc--CCHHHHHHHHHH
Confidence 3578999999999999999999999999999 88887 9999999999999999999999999996 499999999999
Q ss_pred HHcCccchHHHHHHHHHHHHHHHCCeEEEEEEeccCCCHHHHHHHHHHHHHHhCCceeEEEeeeCCCCC-CC
Q 040346 166 IERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCGAAQVKIRNLIQEGVP-SY 236 (237)
Q Consensus 166 ie~~Rl~lL~~I~~~f~~l~~~~~gi~~a~V~SA~~Lseeq~~kI~~~L~kk~g~k~V~L~~~VDpSLI-~~ 236 (237)
++++|+.++++|+++|.+++++.+|++.|+|+||.||+++++++|.+.|++++| +++.+.++|||+|| ||
T Consensus 81 ~~~~r~~~l~~i~~~~~~~~~~~~~~~~~~v~sa~~l~~~~~~~i~~~l~~~~~-~~v~l~~~vd~~ligG~ 151 (177)
T PRK05758 81 AENGRLALLPEILEQFEALRAEHENIVDAEVTSAFPLSEEQLDKLKAALEKRLG-RKVKLNEKVDPSLIGGV 151 (177)
T ss_pred HHCCcHHHHHHHHHHHHHHHHHHcCEEEEEEEEccCCCHHHHHHHHHHHHHHHC-CeeEEEeeEChHHhCce
Confidence 999999999999999999999999999999999999999999999999999999 78999999999999 54
No 12
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=99.97 E-value=4.4e-29 Score=237.19 Aligned_cols=157 Identities=17% Similarity=0.212 Sum_probs=150.0
Q ss_pred CCCCCCCCc-cchhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc-cHHHHHHhcCCCCCHHHHHHHHHHHhcCC-CC
Q 040346 78 TPKSASPNS-HQKPASGYAAALLDKALCHSSLEAVQRDVLKLSRLLK-NEQIQAVCADPFVGDKDKGQIVKELLSSW-KV 154 (237)
Q Consensus 78 ~~~~~~p~~-~~~iA~rYAkALfe~A~e~~~le~v~~eL~~l~~ll~-~~~l~~~L~nP~i~~e~K~~lL~~l~~~~-~~ 154 (237)
+.+|..|.. ..++.+.|++|||++|.++|.+++|+++|..+.+++. +|+|+.+|.||.++.++|.+++.++|++. ++
T Consensus 258 ~~rws~~~dl~~~~~~~~~~AL~~~A~e~~~l~~v~~eL~~~~~~l~~~~el~~~L~~p~i~~~~K~~ll~~l~~~~~~~ 337 (445)
T PRK13428 258 SQRWSANSDLIDALEHVARLALLERAERAGQVDEVEDQLFRFSRILDAQPRLAILLSDYTVPADGRVALLRKVLGGASTV 337 (445)
T ss_pred hCccCccccHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCHHHHHHHHHHHHhccccC
Confidence 566887864 5789999999999999999999999999999999998 99999999999999999999999999853 58
Q ss_pred CHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHCCeEEEEEEeccCCCHHHHHHHHHHHHHHhCCceeEEEeeeCCCCC
Q 040346 155 NSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCGAAQVKIRNLIQEGVP 234 (237)
Q Consensus 155 s~~~~nFL~lLie~~Rl~lL~~I~~~f~~l~~~~~gi~~a~V~SA~~Lseeq~~kI~~~L~kk~g~k~V~L~~~VDpSLI 234 (237)
++.+.|||.+|++++|+..+++|+..|.+++++++|++.|+|+||.||+++|+++|.+.|+++|| ++|+|+++|||+||
T Consensus 338 ~~~~~nfl~~lv~~~R~~~l~~i~~~~~~l~~~~~g~~~a~VtsA~pLs~~q~~~L~~~L~k~~g-~~V~l~~~VDpsLi 416 (445)
T PRK13428 338 NPVTVALLSQTVELLRGQPAEEAVLFLAELAVARRGEVVAQVSAAAELSDAQRTRLTEVLSRIYG-RPVSVQLHIDPELL 416 (445)
T ss_pred CHHHHHHHHHHHHCCchhhHHHHHHHHHHHHHHHCCeeEEEEEeecCCCHHHHHHHHHHHHHHHC-CceEEEeeeCchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999 89999999999999
Q ss_pred C
Q 040346 235 S 235 (237)
Q Consensus 235 ~ 235 (237)
|
T Consensus 417 G 417 (445)
T PRK13428 417 G 417 (445)
T ss_pred C
Confidence 5
No 13
>PF00213 OSCP: ATP synthase delta (OSCP) subunit; InterPro: IPR000711 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This family represents subunits called delta in bacterial and chloroplast ATPase, or OSCP (oligomycin sensitivity conferral protein) in mitochondrial ATPase (note that in mitochondria there is a different delta subunit, IPR001469 from INTERPRO). The OSCP/delta subunit appears to be part of the peripheral stalk that holds the F1 complex alpha3beta3 catalytic core stationary against the torque of the rotating central stalk, and links subunit A of the F0 complex with the F1 complex. In mitochondria, the peripheral stalk consists of OSCP, as well as F0 components F6, B and D. In bacteria and chloroplasts the peripheral stalks have different subunit compositions: delta and two copies of F0 component B (bacteria), or delta and F0 components B and B' (chloroplasts) [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0015986 ATP synthesis coupled proton transport; PDB: 2A7U_B 1ABV_A 2WSS_S 2BO5_A 2JMX_A.
Probab=99.96 E-value=5.6e-33 Score=231.94 Aligned_cols=146 Identities=23% Similarity=0.449 Sum_probs=116.4
Q ss_pred hhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc-cHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 040346 90 PASGYAAALLDKALCHSSLEAVQRDVLKLSRLLK-NEQIQAVCADPFVGDKDKGQIVKELLSSWKVNSYLAALLRMLIER 168 (237)
Q Consensus 90 iA~rYAkALfe~A~e~~~le~v~~eL~~l~~ll~-~~~l~~~L~nP~i~~e~K~~lL~~l~~~~~~s~~~~nFL~lLie~ 168 (237)
||++||+|||++|.++|.++.|.++|+.+.+++. +++|+.+|.+|.++.++|.+++++++++ ++++.+.|||++|+++
T Consensus 1 ia~~YA~AL~~~a~e~~~l~~v~~~l~~l~~~~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~-~~~~~~~nfL~~l~~~ 79 (172)
T PF00213_consen 1 IAKRYAKALFELAKEEGKLDEVLEELQSLLEILKSNPELRKFLESPFIPKEEKKELLDEIFKG-KLSEETVNFLKLLIDN 79 (172)
T ss_dssp HHHCHHHHHHHHCCCCTTHHHHHHHHHHH-HHHCCSCCCHHHHT-TTTTCCCCCCCCCHHCTT-T-SCCCCHHHHHHCCT
T ss_pred CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCHHHHHHHcCccccHHHHHHHHHHHHcc-cCCHHHHHHHHHHHhc
Confidence 6899999999999999999999999999999998 9999999999999999999999999997 7999999999999999
Q ss_pred CccchHHHHHHHHHHHHHHHCCeEEEEEEeccCCCHHHHHHHHHHHHHHhCCceeEEEeeeCCCCC-CC
Q 040346 169 NKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCGAAQVKIRNLIQEGVP-SY 236 (237)
Q Consensus 169 ~Rl~lL~~I~~~f~~l~~~~~gi~~a~V~SA~~Lseeq~~kI~~~L~kk~g~k~V~L~~~VDpSLI-~~ 236 (237)
+|+.++++|+++|.+++++..|+..|+|+||.||+++|+++|++.+++++|.++|.+++.|||+|| ||
T Consensus 80 ~r~~~l~~i~~~~~~~~~~~~~~~~~~V~sA~~l~~~q~~~l~~~l~~~~~~~~v~~~~~vD~sLigG~ 148 (172)
T PF00213_consen 80 NRLSLLPEILEEFEELVNEHNGIVEATVTSAFPLSEEQKKKLEKKLKKKYGKKKVELNYKVDPSLIGGF 148 (172)
T ss_dssp T-CCCHHHHHHHHHHHHHHHCCTS-B-SSS-B----SSSTTTTTTCCCTTTT-----------------
T ss_pred CCcccHHHHHHHHHHHHHHHcCeEEEEEEEecCCCHHHHHHHHHHHHHHHCCCeeeEEEEEccccCcEE
Confidence 999999999999999999999999999999999999999999999999999448999999999999 54
No 14
>PRK13431 F0F1 ATP synthase subunit delta; Provisional
Probab=99.96 E-value=1.1e-27 Score=202.88 Aligned_cols=138 Identities=22% Similarity=0.246 Sum_probs=129.5
Q ss_pred cchhhhHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHhccHHHHHHhcCCCCCHHHHHHHHHHHhc----CCCCCHHHHHH
Q 040346 87 HQKPASGYAAALLDKALCH-SSLEAVQRDVLKLSRLLKNEQIQAVCADPFVGDKDKGQIVKELLS----SWKVNSYLAAL 161 (237)
Q Consensus 87 ~~~iA~rYAkALfe~A~e~-~~le~v~~eL~~l~~ll~~~~l~~~L~nP~i~~e~K~~lL~~l~~----~~~~s~~~~nF 161 (237)
...||+|||+|||++|.++ |.+++++++|..+.++|.+++|+.+|.||.+ ++|.+++.++++ + .+++.+.||
T Consensus 4 ~g~IAkRYAkAL~~~a~e~~~~le~v~~~L~~L~~~f~~~el~~il~~P~~--~~Kkk~l~~l~~~a~~~-~~~~~~~NF 80 (180)
T PRK13431 4 LKVISKHYAKALKNHTKGDLALLEEIVVGLKNVAEAIKLHKLNQVLAHVSL--KVKKEVVFEILEKITSI-KACSVLKPV 80 (180)
T ss_pred cchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccHHHHHHHhCccH--HHHHHHHHHHHhhhccc-cccHHHHHH
Confidence 4569999999999999999 9999999999999999997799999999999 777777777776 4 689999999
Q ss_pred HHHHHHcCccchHHHHHHHHHHHHHHHCCeEEEEEEeccCCCHHHHHHHHHHHHHHhCCceeEEEeeeCC
Q 040346 162 LRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCGAAQVKIRNLIQE 231 (237)
Q Consensus 162 L~lLie~~Rl~lL~~I~~~f~~l~~~~~gi~~a~V~SA~~Lseeq~~kI~~~L~kk~g~k~V~L~~~VDp 231 (237)
|++|++|+|+.+|++|+.+ ++++..|++.|+|+||.||+++|+++|++.|++++| ++|++.+.+++
T Consensus 81 l~LL~en~Rl~~LpeIa~~---L~~~~~~i~~~~V~SA~~Ls~~~~~~I~~~L~kk~g-~kV~L~~~~~~ 146 (180)
T PRK13431 81 MEVVLKNNRLDMLELITEE---LSFDSKRTLEATLLVPEKLENNELEAVQQKLQARFN-APVEIAQDTWS 146 (180)
T ss_pred HHHHHHcChHHHHHHHHHH---HHHHHcCeEEEEEEecccCCHHHHHHHHHHHHHHHC-CeEEEEeeccC
Confidence 9999999999999999994 999999999999999999999999999999999999 79999998875
No 15
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=98.41 E-value=1.4e-06 Score=77.12 Aligned_cols=43 Identities=21% Similarity=0.311 Sum_probs=41.1
Q ss_pred EEEEEEeccCCCHHHHHHHHHHHHHHhCCceeEEEeeeCCCCCC
Q 040346 192 RVVFVSSAKKMEEDQLFHIAKRVQNLCGAAQVKIRNLIQEGVPS 235 (237)
Q Consensus 192 ~~a~V~SA~~Lseeq~~kI~~~L~kk~g~k~V~L~~~VDpSLI~ 235 (237)
..++|+||+||+++|+++|.+.|++++| ++|.+++.|||+|||
T Consensus 177 ~~~~v~sa~~l~~~~~~~i~~~l~~~~~-~~v~~~~~vdp~lig 219 (246)
T TIGR03321 177 NPVLVRSAFELPEEQREQIRDTIRETLG-PEIRLRFQTEPDLIG 219 (246)
T ss_pred CceEEEecCCCCHHHHHHHHHHHHHHHC-CCeeEEeeeCchhcC
Confidence 5599999999999999999999999999 899999999999994
No 16
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=97.27 E-value=0.0022 Score=57.14 Aligned_cols=45 Identities=7% Similarity=0.055 Sum_probs=41.6
Q ss_pred CCeEEEEEEeccCCCHHHHHHHHHHHHH-HhCCceeEEEeeeCCCCC
Q 040346 189 IGTRVVFVSSAKKMEEDQLFHIAKRVQN-LCGAAQVKIRNLIQEGVP 234 (237)
Q Consensus 189 ~gi~~a~V~SA~~Lseeq~~kI~~~L~k-k~g~k~V~L~~~VDpSLI 234 (237)
.+-..+.|+|++||++++.++|.+.|.. .+| ..+.+.+.+||+||
T Consensus 173 ~~~~~~~i~ta~~l~~~~~~~~~~~l~~~~~~-~~~~~~f~~~p~li 218 (250)
T PRK14474 173 TTPEMLRIRTSFELSQDLRAQILESLHQTHLI-PGTDIHFVTSPELI 218 (250)
T ss_pred cCCCCeEEEeCCCCCHHHHHHHHHHHHHHhcC-CCCceeeecCcccc
Confidence 3555599999999999999999999999 999 79999999999999
No 17
>PRK13430 F0F1 ATP synthase subunit delta; Provisional
Probab=97.05 E-value=0.0045 Score=55.81 Aligned_cols=61 Identities=15% Similarity=0.282 Sum_probs=57.7
Q ss_pred CHHHHHHHHHHHHHHhc-cHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 040346 107 SLEAVQRDVLKLSRLLK-NEQIQAVCADPFVGDKDKGQIVKELLSSWKVNSYLAALLRMLIER 168 (237)
Q Consensus 107 ~le~v~~eL~~l~~ll~-~~~l~~~L~nP~i~~e~K~~lL~~l~~~~~~s~~~~nFL~lLie~ 168 (237)
...++.+||..+.+++. ++.++..|.||..+.+.|..++..+|++ ++++.+.+++..++.+
T Consensus 26 ~~~~~~~eL~~v~~~l~~~~~lrral~dp~~~~~~k~~L~~~l~~~-kv~~~~~~~~~~~v~~ 87 (271)
T PRK13430 26 AAAQIGNELFAVVAVLDRERSLRRALTDPARPPEAKVELVKRLFGG-KVSPATLEVVSDAVRQ 87 (271)
T ss_pred hHHHHHHHHHHHHHHHccchHHHHhcCCCCCChHHHHHHHHHHhcc-cCCHHHHHHHHHHHHh
Confidence 56789999999999999 9999999999999999999999999998 8999999999998886
No 18
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=95.87 E-value=0.05 Score=52.37 Aligned_cols=64 Identities=19% Similarity=0.315 Sum_probs=58.5
Q ss_pred CCHHHHHHHHHHHHHHhc-cHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCc
Q 040346 106 SSLEAVQRDVLKLSRLLK-NEQIQAVCADPFVGDKDKGQIVKELLSSWKVNSYLAALLRMLIERNK 170 (237)
Q Consensus 106 ~~le~v~~eL~~l~~ll~-~~~l~~~L~nP~i~~e~K~~lL~~l~~~~~~s~~~~nFL~lLie~~R 170 (237)
+.+.++-+||..+.+++. ++.|+..|.||..+.+.|..++..+|++ ++++.+..++.-++..+.
T Consensus 197 ~~~~~~~~el~~v~~~l~~~~~lrr~l~d~~~~~~~k~~l~~~l~~~-~~~~~~~~~~~~~~~~rw 261 (445)
T PRK13428 197 QALTTLADELVSVAKLLDREPVLTKHLTEPAEDAAPKIRLVERLFSG-KVGAPTLEVLRTAVSQRW 261 (445)
T ss_pred hhHHHHHHHHHHHHHHHcccHHHHHHcCCCCCChhhHHHHHHHHhCc-CCCHHHHHHHHHHHhCcc
Confidence 346689999999999999 9999999999999999999999999998 899999999988887654
No 19
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=87.19 E-value=14 Score=33.14 Aligned_cols=72 Identities=10% Similarity=0.121 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHHCCeEEEEEEeccCCCHHHHHHHHHHHHHHhCCceeEEEeeeCCCCC
Q 040346 157 YLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCGAAQVKIRNLIQEGVP 234 (237)
Q Consensus 157 ~~~nFL~lLie~~Rl~lL~~I~~~f~~l~~~~~gi~~a~V~SA~~Lseeq~~kI~~~L~kk~g~k~V~L~~~VDpSLI 234 (237)
...+++..++++++..+++.|-+.+..+.+ .+.+.+.| .|=+-+......+.+...+| ....+....||+|-
T Consensus 175 iaekvi~~~~~~~~~~i~~li~~al~~l~~--~~~i~I~V---~p~d~~~l~~~~~~l~~~l~-~~~~i~I~~D~~l~ 246 (281)
T PRK06669 175 IAKKVIKEISENSKEIALALVKELLKEVKD--ATDITIRV---NPEDYEYVKEQKDELISLLD-NEEHLKIYEDDAIS 246 (281)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHcCc--CCcEEEEE---CHHHHHHHHHhHHHHHHhcC-CCCCeEEEECCCCC
Confidence 345888888999998888887777776543 23333333 33333444444444555676 56778888888875
No 20
>PF12685 SpoIIIAH: SpoIIIAH-like protein; InterPro: IPR024232 Stage III sporulation protein AH (SpoIIIAH) is a protein that is involved in forespore engulfment. It forms a channel with SpoIIIAH that is open on the forespore end and closed (or gated) on the mother cell end. This allows sigma-E-directed gene expression in the mother-cell compartment of the sporangium to trigger the activation of sigma-G forespore-specific gene expression by a pathway of intercellular signaling. This family of proteins is found in bacteria, archaea and eukaryotes and so must have a wider function than in sporulation. Proteins in this family are typically between 174 and 223 amino acids in length.; PDB: 3UZ0_A 3TUF_A.
Probab=76.78 E-value=9.5 Score=32.54 Aligned_cols=121 Identities=13% Similarity=0.080 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc---cHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC
Q 040346 93 GYAAALLDKALCHSSLEAVQRDVLKLSRLLK---NEQIQAVCADPFVGDKDKGQIVKELLSSWKVNSYLAALLRMLIERN 169 (237)
Q Consensus 93 rYAkALfe~A~e~~~le~v~~eL~~l~~ll~---~~~l~~~L~nP~i~~e~K~~lL~~l~~~~~~s~~~~nFL~lLie~~ 169 (237)
.+..+..........-+.++.+++.=.+--+ -..|+.++.|+..+.++|.+..+++.+- .-......-+.-|+..+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~f~~~rl~Re~~r~~~~e~L~~ii~~~~~s~~~k~~A~~~~~~l-~~~~~kE~~iE~llkak 147 (196)
T PF12685_consen 69 NEGEAVDTSSSSSSSGSDYFAEARLEREQSRSKQIETLKEIINNENASEEEKKEAQDKLLEL-TEKMEKEMEIENLLKAK 147 (196)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHHHHHHHHT-TTS-HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTT
T ss_pred ccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhC
Confidence 3444444333333333345555555544442 4789999999999999999999888752 11122223333333222
Q ss_pred ccchHHHHHHHHHHH-HHHHCCeEEEEEEeccCCCHHHHHHHHHHHHHHhC--CceeEE
Q 040346 170 KVAMVSDVLEEFQRI-YDDLIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCG--AAQVKI 225 (237)
Q Consensus 170 Rl~lL~~I~~~f~~l-~~~~~gi~~a~V~SA~~Lseeq~~kI~~~L~kk~g--~k~V~L 225 (237)
-|.+. +.-..+.+.|.|-+.. |++++..+|.+.+.+.+| ..+|.+
T Consensus 148 ----------Gf~davv~~~~~~v~VvV~~~~-L~~~~~~~I~diV~~~~~v~~~~I~V 195 (196)
T PF12685_consen 148 ----------GFEDAVVFIEDDSVDVVVKADK-LSDAEAAQIIDIVMRETGVPAENISV 195 (196)
T ss_dssp ----------S-SEEEEE-SSSEEEEEEE-S----HHHHHHHHHHHHHHHC-STSEEEE
T ss_pred ----------CCCceEEEeeCCEEEEEEeCCC-CCHHHHHHHHHHHHHHhCCCcCeEEe
Confidence 12222 2223455666666655 999999999999999998 334443
No 21
>PF14674 FANCI_S1-cap: FANCI solenoid 1 cap; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=57.84 E-value=15 Score=25.18 Aligned_cols=50 Identities=16% Similarity=0.350 Sum_probs=34.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhccHHHHHHhcCCCCCHHHHHHHHHHHhcC
Q 040346 97 ALLDKALCHSSLEAVQRDVLKLSRLLKNEQIQAVCADPFVGDKDKGQIVKELLSS 151 (237)
Q Consensus 97 ALfe~A~e~~~le~v~~eL~~l~~ll~~~~l~~~L~nP~i~~e~K~~lL~~l~~~ 151 (237)
-++.+|.++. -++|+.+.+.+++.++..++.+-.+.-.+-..+|+.||++
T Consensus 4 kIlsLa~~~t-----~e~LQ~~Lq~L~edeLt~~lt~~AlKGk~~Gallr~IfKG 53 (53)
T PF14674_consen 4 KILSLAAEDT-----TEELQKFLQTLKEDELTDLLTNQALKGKDVGALLRGIFKG 53 (53)
T ss_dssp HHHHHHHH-T-----THHHHHHHHHH-S-SHHHHHHHHHH-HHHHHTHHHHHHTT
T ss_pred HHHHHhhcCC-----HHHHHHHHHHcchhHHHHHHHHHhhcchHHHHHHHHHhcC
Confidence 4556665433 2567777777888899999998888888888888888863
No 22
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=49.82 E-value=1.2e+02 Score=23.28 Aligned_cols=90 Identities=9% Similarity=0.142 Sum_probs=54.8
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC--ccchHHHHHHHHHHHHHHHCCeEEEEEEeccCC
Q 040346 125 EQIQAVCADPFVGDKDKGQIVKELLSSWKVNSYLAALLRMLIERN--KVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKM 202 (237)
Q Consensus 125 ~~l~~~L~nP~i~~e~K~~lL~~l~~~~~~s~~~~nFL~lLie~~--Rl~lL~~I~~~f~~l~~~~~gi~~a~V~SA~~L 202 (237)
.+|..++.|+.++..++..-+.+..++.++...+..|..-+.... ...-+..++..+-..+.....|. .-..|
T Consensus 5 ~ef~~I~~n~~lt~~e~~~~l~~Wa~~~~v~~~~~~f~~~~~~~~~~~~~~~~~vi~~L~~a~~~l~~I~-----~n~~l 79 (113)
T PF02520_consen 5 KEFFQIFQNPNLTKAEIEEQLDEWAEKYGVQDQYNEFKAQVQAQKEEVRKNVTAVISNLSSAFAKLSAIL-----DNKSL 79 (113)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCccc
Confidence 478899999999999999999999987778888888887543211 12223333333333333332222 24556
Q ss_pred CHHHHHHHHHHHHHHhC
Q 040346 203 EEDQLFHIAKRVQNLCG 219 (237)
Q Consensus 203 seeq~~kI~~~L~kk~g 219 (237)
+..|...=...|.+.+.
T Consensus 80 T~~q~~~~I~~l~~~~~ 96 (113)
T PF02520_consen 80 TRQQQQEAIDALRKQYP 96 (113)
T ss_pred CHHHHHHHHHHHHHHCC
Confidence 76665555555554443
No 23
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=44.67 E-value=1.4e+02 Score=29.41 Aligned_cols=20 Identities=20% Similarity=0.268 Sum_probs=16.0
Q ss_pred ccCCCHHHHHHHHHHHHHHh
Q 040346 199 AKKMEEDQLFHIAKRVQNLC 218 (237)
Q Consensus 199 A~~Lseeq~~kI~~~L~kk~ 218 (237)
...|+++..++|++.+++..
T Consensus 477 ~~~l~~~~~~~L~~~i~~~~ 496 (501)
T TIGR00962 477 KKKLTEELEDKLKEALKNFK 496 (501)
T ss_pred cCCCCHHHHHHHHHHHHHHH
Confidence 46799998888988887753
No 24
>PF07560 DUF1539: Domain of Unknown Function (DUF1539); InterPro: IPR011436 This domain is found in a small number of Chlamydia proteins of unknown function. It occurs together with IPR013044 from INTERPRO.
Probab=42.78 E-value=29 Score=28.05 Aligned_cols=33 Identities=15% Similarity=0.130 Sum_probs=25.4
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHH
Q 040346 126 QIQAVCADPFVGDKDKGQIVKELLSSWKVNSYL 158 (237)
Q Consensus 126 ~l~~~L~nP~i~~e~K~~lL~~l~~~~~~s~~~ 158 (237)
.+-.+|.||.|+.++|.+++..|..-..-++.+
T Consensus 71 ~l~~aL~dp~Is~erK~~~l~yIaSya~~c~pT 103 (126)
T PF07560_consen 71 QLIKALQDPTISKERKREALNYIASYADACPPT 103 (126)
T ss_pred HHHHHhcCCCCChHHHHHHHHHHHHHhccCchh
Confidence 567788899999999999999887653334433
No 25
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=42.12 E-value=1.4e+02 Score=22.72 Aligned_cols=32 Identities=6% Similarity=0.099 Sum_probs=28.9
Q ss_pred cHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCCHH
Q 040346 124 NEQIQAVCADPFVGDKDKGQIVKELLSSWKVNSY 157 (237)
Q Consensus 124 ~~~l~~~L~nP~i~~e~K~~lL~~l~~~~~~s~~ 157 (237)
..++..++.|..++..++.+-|+++.+. ++..
T Consensus 67 ~~~l~~I~~n~~lT~~q~~~~I~~l~~~--~~~e 98 (113)
T PF02520_consen 67 FAKLSAILDNKSLTRQQQQEAIDALRKQ--YPEE 98 (113)
T ss_pred HHHHHHHHcCcccCHHHHHHHHHHHHHH--CCHH
Confidence 5789999999999999999999999984 7766
No 26
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=41.79 E-value=1.3e+02 Score=21.42 Aligned_cols=51 Identities=12% Similarity=0.229 Sum_probs=42.1
Q ss_pred CCCHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHCCeEEEEEEeccCCCHHHHHHHHHHHHHHh
Q 040346 153 KVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKRVQNLC 218 (237)
Q Consensus 153 ~~s~~~~nFL~lLie~~Rl~lL~~I~~~f~~l~~~~~gi~~a~V~SA~~Lseeq~~kI~~~L~kk~ 218 (237)
.+++.+..|+.-.++.||..-..+++.+-..+..++. .+++.|++.+..-.
T Consensus 5 sL~~~~~~~i~~~V~sG~Y~s~SEVir~aLR~le~~e---------------~~~~~Lr~~i~~g~ 55 (69)
T TIGR02606 5 SLGEHLESFIRSQVQSGRYGSASEVVRAALRLLEERE---------------TKLQALRDAIEEGE 55 (69)
T ss_pred ecCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHH
Confidence 4688999999999999999999999999999888875 24667777776543
No 27
>PF14480 DNA_pol3_a_NI: DNA polymerase III polC-type N-terminus I
Probab=41.22 E-value=1.2e+02 Score=21.32 Aligned_cols=43 Identities=9% Similarity=0.051 Sum_probs=35.5
Q ss_pred HHHHCCeEEEEEEeccCCCHHHHHHHHHHHHHHhCC-ceeEEEe
Q 040346 185 YDDLIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCGA-AQVKIRN 227 (237)
Q Consensus 185 ~~~~~gi~~a~V~SA~~Lseeq~~kI~~~L~kk~g~-k~V~L~~ 227 (237)
+.+..+.....+.+...|+.+....+.+.|++.++. .+|++..
T Consensus 31 v~k~~~~w~f~l~~~~~l~~~~~~~~~~~l~~~F~~ia~v~~~i 74 (76)
T PF14480_consen 31 VHKKSRKWRFHLSSPHILPFEVYQKFEEKLKKQFSHIAKVELII 74 (76)
T ss_pred EEccCCEEEEEEEeCCcCCHHHHHHHHHHHHHHhCCcCeEEEEE
Confidence 456688899999999999999999999999999872 2565554
No 28
>cd02413 40S_S3_KH K homology RNA-binding (KH) domain of the eukaryotic 40S small ribosomal subunit protein S3. S3 is part of the head region of the 40S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=40.90 E-value=79 Score=23.21 Aligned_cols=39 Identities=5% Similarity=0.077 Sum_probs=30.5
Q ss_pred CCeEEEEEEeccCC-----CHHHHHHHHHHHHHHhCCceeEEEe
Q 040346 189 IGTRVVFVSSAKKM-----EEDQLFHIAKRVQNLCGAAQVKIRN 227 (237)
Q Consensus 189 ~gi~~a~V~SA~~L-----seeq~~kI~~~L~kk~g~k~V~L~~ 227 (237)
.+.+.+.|+||.|= ....+++|++.|++++|..+..++.
T Consensus 29 ~~~i~I~I~tarPg~vIG~~G~~i~~L~~~L~k~~~~~~~~i~v 72 (81)
T cd02413 29 PTRTEIIIRATRTQNVLGEKGRRIRELTSLVQKRFNFPEGSVEL 72 (81)
T ss_pred CCeEEEEEEeCCCceEECCCchhHHHHHHHHHHHhCCCCCeEEE
Confidence 34567778888874 5689999999999999965666665
No 29
>PF13043 DUF3903: Domain of unknown function (DUF3903)
Probab=40.36 E-value=9 Score=24.40 Aligned_cols=28 Identities=11% Similarity=0.233 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhCCceeEEEeeeCCCCC
Q 040346 206 QLFHIAKRVQNLCGAAQVKIRNLIQEGVP 234 (237)
Q Consensus 206 q~~kI~~~L~kk~g~k~V~L~~~VDpSLI 234 (237)
.+++++...++++| +.+-+.++|-++++
T Consensus 9 ai~kvr~eckrrfg-ktlllqtei~ee~~ 36 (40)
T PF13043_consen 9 AIQKVRAECKRRFG-KTLLLQTEIKEEIV 36 (40)
T ss_pred HHHHHHHHHHHHhc-hhhhhhhHhhHHhh
Confidence 36788888999999 89999999887765
No 30
>PF05823 Gp-FAR-1: Nematode fatty acid retinoid binding protein (Gp-FAR-1); InterPro: IPR008632 Parasitic nematodes produce at least two structurally novel classes of small helix-rich retinol- and fatty-acid-binding proteins that have no counterparts in their plant or animal hosts and thus represent potential targets for new nematicides. Gp-FAR-1 is a member of the nematode-specific fatty-acid- and retinol-binding (FAR) family of proteins but localises to the surface of the organism, placing it in a strategic position for interaction with the host. Gp-FAR-1 functions as a broad-spectrum retinol- and fatty-acid-binding protein, and it is thought that it is involved in the evasion of primary host plant defence systems [].; GO: 0008289 lipid binding; PDB: 2W9Y_A.
Probab=36.39 E-value=59 Score=26.84 Aligned_cols=86 Identities=10% Similarity=0.126 Sum_probs=44.6
Q ss_pred cHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHCCeEEEEEEeccCCC
Q 040346 124 NEQIQAVCADPFVGDKDKGQIVKELLSSWKVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKME 203 (237)
Q Consensus 124 ~~~l~~~L~nP~i~~e~K~~lL~~l~~~~~~s~~~~nFL~lLie~~Rl~lL~~I~~~f~~l~~~~~gi~~a~V~SA~~Ls 203 (237)
.|++..-+ +.....+..-+. +++++.+.|++=|++.+|. +..+....-.--.+...+...-.+.....|+
T Consensus 53 sP~L~~k~-------~~l~~~~k~ki~--~L~peak~Fv~~li~~~~~-l~~~~~~G~~~~~~~lk~~~k~~~~~ykaLs 122 (154)
T PF05823_consen 53 SPSLYEKA-------EKLRDKLKKKID--KLSPEAKAFVKELIAKARS-LYAQYSAGEKPDLEELKQLAKKVIDSYKALS 122 (154)
T ss_dssp -HHHHHHH-------HHHHHHHHHTTT--T--HHHHHHHHHHHHHHHH-HHHHHHHT----THHHHHHH----HHHHTS-
T ss_pred CHHHHHHH-------HHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHH-HHHHhcCCCCCCHHHHHHHHhhhHHHHHcCC
Confidence 56665543 233344444554 5899999999999887774 3333332222223333445556677788999
Q ss_pred HHHHHHHHHHHHHHhC
Q 040346 204 EDQLFHIAKRVQNLCG 219 (237)
Q Consensus 204 eeq~~kI~~~L~kk~g 219 (237)
++.++.|++..-..++
T Consensus 123 ~~ak~dL~k~FP~i~~ 138 (154)
T PF05823_consen 123 PEAKDDLKKNFPIIAS 138 (154)
T ss_dssp HHHHHHHHHH-TT---
T ss_pred HHHHHHHHHHCccchh
Confidence 9999999887655443
No 31
>PRK06824 translation initiation factor Sui1; Validated
Probab=35.30 E-value=70 Score=25.51 Aligned_cols=31 Identities=32% Similarity=0.523 Sum_probs=28.5
Q ss_pred CCeEEEEEEeccCCCHHHHHHHHHHHHHHhC
Q 040346 189 IGTRVVFVSSAKKMEEDQLFHIAKRVQNLCG 219 (237)
Q Consensus 189 ~gi~~a~V~SA~~Lseeq~~kI~~~L~kk~g 219 (237)
++...++|++-.+++++.+++|.+.|++++|
T Consensus 52 r~gK~VTvI~Gl~~~~~dlk~l~K~LKkk~g 82 (118)
T PRK06824 52 RGGKTVTVITGVPLAEDALKELAKELKRRCG 82 (118)
T ss_pred CCCceEEEEeCCcCCHHHHHHHHHHHHHHhc
Confidence 5677889999999999999999999999998
No 32
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=34.40 E-value=1.8e+02 Score=27.76 Aligned_cols=62 Identities=19% Similarity=0.239 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHHHHHCCe-EEEEEE----eccCCCHHHHHHHHHHHHHHhC--CceeEEEeeeCCCCC
Q 040346 173 MVSDVLEEFQRIYDDLIGT-RVVFVS----SAKKMEEDQLFHIAKRVQNLCG--AAQVKIRNLIQEGVP 234 (237)
Q Consensus 173 lL~~I~~~f~~l~~~~~gi-~~a~V~----SA~~Lseeq~~kI~~~L~kk~g--~k~V~L~~~VDpSLI 234 (237)
++..++++.........+. ..-+|+ |..-|+++|+++|-+.|.+.++ ...+++..++||.-+
T Consensus 67 Y~~aL~~Ei~~~~~~~~~~~~v~ti~~GGGTPslL~~~~l~~ll~~l~~~~~~~~~~~EitiE~nP~~~ 135 (416)
T COG0635 67 YLDALLEEIELVAALLGGQREVKTIYFGGGTPSLLSPEQLERLLKALRELFNDLDPDAEITIEANPGTV 135 (416)
T ss_pred HHHHHHHHHHHHHhhcCCCCeEEEEEECCCccccCCHHHHHHHHHHHHHhcccCCCCceEEEEeCCCCC
Confidence 4445555555554444442 344454 7789999999999999999993 344899999999743
No 33
>PRK09019 translation initiation factor Sui1; Validated
Probab=34.21 E-value=62 Score=25.40 Aligned_cols=29 Identities=17% Similarity=0.432 Sum_probs=26.2
Q ss_pred eEEEEEEeccCCCHHHHHHHHHHHHHHhC
Q 040346 191 TRVVFVSSAKKMEEDQLFHIAKRVQNLCG 219 (237)
Q Consensus 191 i~~a~V~SA~~Lseeq~~kI~~~L~kk~g 219 (237)
-..++|++-.+++++.+++|.+.|++++|
T Consensus 44 GK~VTiI~Gl~~~~~dlk~l~K~lKkk~g 72 (108)
T PRK09019 44 GKGVCLITGLDLDDAELKKLAAELKKKCG 72 (108)
T ss_pred CCeEEEEeCCcCCHHHHHHHHHHHHHHhc
Confidence 33788899999999999999999999997
No 34
>PF04918 DltD_M: DltD central region; InterPro: IPR007002 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the central region of DltD.; PDB: 3BMA_C.
Probab=32.43 E-value=1.2e+02 Score=25.03 Aligned_cols=63 Identities=17% Similarity=0.174 Sum_probs=40.3
Q ss_pred HhccHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCccchHHHHHHHHHHH
Q 040346 121 LLKNEQIQAVCADPFVGDKDKGQIVKELLSSWKVNSYLAALLRMLIERNKVAMVSDVLEEFQRI 184 (237)
Q Consensus 121 ll~~~~l~~~L~nP~i~~e~K~~lL~~l~~~~~~s~~~~nFL~lLie~~Rl~lL~~I~~~f~~l 184 (237)
-+....+..||.|+.++.+.|..+.+.+++- .-+..+.+.|+-++..+.+.....+.-.+...
T Consensus 49 ~fS~~q~~~fl~n~~is~~~k~~~AkRlL~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 111 (163)
T PF04918_consen 49 YFSPLQAYNFLFNPKISDETKRYAAKRLLEL-PSDVTLKNLLKKIAKGKKLSSFDRWYLRLRYR 111 (163)
T ss_dssp H--HHHHHHHHHH---SSHHHHHHHHHHHHH--TT-TTHHHHHHHHTT----HHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHCCCCCcHHHHHHHHHHHhh-cccHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3445688899999999999999999999975 34567778888888888777666655555443
No 35
>PF12170 DNA_pol3_tau_5: DNA polymerase III tau subunit V interacting with alpha; InterPro: IPR021029 This domain family is found in bacteria, and is approximately 140 amino acids in length. The family is found in association with PF00004 from PFAM. Domains I-III are shared between the tau and the gamma subunits, while most of the DnaB-binding Domain IV and all of the alpha-interacting Domain V are unique to tau. The extreme C-terminal region of this domain 5 is the part which interacts with the alpha subunit of the DNA polymerase III holoenzyme [, ]. ; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 2AYA_A.
Probab=30.67 E-value=77 Score=25.86 Aligned_cols=44 Identities=5% Similarity=0.060 Sum_probs=29.1
Q ss_pred HHHCCeEEEEEEecc--CCCHHHHHHHHHHHHHHhCCceeEEEeeeC
Q 040346 186 DDLIGTRVVFVSSAK--KMEEDQLFHIAKRVQNLCGAAQVKIRNLIQ 230 (237)
Q Consensus 186 ~~~~gi~~a~V~SA~--~Lseeq~~kI~~~L~kk~g~k~V~L~~~VD 230 (237)
....+.+.-.+.++. =.++...++|.+.|+..+| +.|+|...++
T Consensus 48 ~~~~~~v~L~L~~~q~HL~~~~a~~~L~~ALs~~~g-~~i~L~I~~~ 93 (142)
T PF12170_consen 48 EQEDDQVCLHLRPSQKHLNNDSAQEQLQQALSEYLG-EPIKLSIEEG 93 (142)
T ss_dssp EE-SSEEEEEE-GGGTTT--HHHHHHHHHHHHHHHS-S--EEEEEE-
T ss_pred hccCCEEEEEEChhhHhhCCHHHHHHHHHHHHHHhC-CCEEEEEEEC
Confidence 334566666776654 3567779999999999999 8999998775
No 36
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=30.25 E-value=6.7e+02 Score=26.41 Aligned_cols=82 Identities=15% Similarity=0.056 Sum_probs=50.2
Q ss_pred cCCHHHHHHHHHHHHHHhc-----cHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCc--cchHHHH
Q 040346 105 HSSLEAVQRDVLKLSRLLK-----NEQIQAVCADPFVGDKDKGQIVKELLSSWKVNSYLAALLRMLIERNK--VAMVSDV 177 (237)
Q Consensus 105 ~~~le~v~~eL~~l~~ll~-----~~~l~~~L~nP~i~~e~K~~lL~~l~~~~~~s~~~~nFL~lLie~~R--l~lL~~I 177 (237)
.|++.....+|+.+..... ..++..++.+. ..+...++++.+..+ + ...+..++.-|++.|- ..++.++
T Consensus 212 gGdlR~Al~eLEKLia~~~~~~IT~e~V~allg~~--~~~~I~~lidAL~~~-D-~a~al~~l~~Li~~G~dp~~~L~~L 287 (824)
T PRK07764 212 GGSVRDSLSVLDQLLAGAGPEGVTYERAVALLGVT--DSALIDEAVDALAAG-D-GAALFGTVDRVIEAGHDPRRFAEDL 287 (824)
T ss_pred CCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHhcCC--CHHHHHHHHHHHHcC-C-HHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 4667777777766653211 25566666543 334455667777654 3 3455666777776643 5678888
Q ss_pred HHHHHHHHHHHCC
Q 040346 178 LEEFQRIYDDLIG 190 (237)
Q Consensus 178 ~~~f~~l~~~~~g 190 (237)
++.|.+++.-+.+
T Consensus 288 L~~fRDLL~vka~ 300 (824)
T PRK07764 288 LERLRDLIVLQAV 300 (824)
T ss_pred HHHHHHHHHHHhc
Confidence 9999888766543
No 37
>PF14675 FANCI_S1: FANCI solenoid 1; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=30.21 E-value=1.8e+02 Score=25.52 Aligned_cols=90 Identities=14% Similarity=0.210 Sum_probs=55.0
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHhcCC------CCCHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHCC----eEEE
Q 040346 125 EQIQAVCADPFVGDKDKGQIVKELLSSW------KVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIG----TRVV 194 (237)
Q Consensus 125 ~~l~~~L~nP~i~~e~K~~lL~~l~~~~------~~s~~~~nFL~lLie~~Rl~lL~~I~~~f~~l~~~~~g----i~~a 194 (237)
..+..+|.+=.+++++...++.++++.. .+++.+-.+|.+-....|...|..|.+-|.+++.++.. --..
T Consensus 114 ~~l~~mfrd~~Ls~~e~~~vv~Kv~~~l~~l~l~elPpLvyQLL~Lsskg~k~~vL~gl~~~F~~~~~~~~~~~~~~~~~ 193 (223)
T PF14675_consen 114 IQLASMFRDVPLSKEELEFVVEKVLSMLKKLDLQELPPLVYQLLLLSSKGSKKLVLEGLIKYFNRLDKQKNESQSGSNST 193 (223)
T ss_dssp HHHHHHGGGS---HHHHHHHHHHHHHHHTTS-GGGHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCChhhccHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhhhhhhccCccc
Confidence 4778888898899999999999998753 23456666666666667788899999999888755432 2222
Q ss_pred EEEeccCCCHHHHHHHHHHH
Q 040346 195 FVSSAKKMEEDQLFHIAKRV 214 (237)
Q Consensus 195 ~V~SA~~Lseeq~~kI~~~L 214 (237)
.+.+....+++|+..++..+
T Consensus 194 d~~~i~~~~~~elr~vEgTv 213 (223)
T PF14675_consen 194 DLDSIDSVSDKELRQVEGTV 213 (223)
T ss_dssp --------SHHHHHHHHHHH
T ss_pred chhhhccCCHHHHHHHHhHH
Confidence 34344456677777666543
No 38
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=29.87 E-value=3.2e+02 Score=26.95 Aligned_cols=117 Identities=14% Similarity=0.049 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhc--cHHHHHHhcCCCCCHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHc
Q 040346 94 YAAALLDKALCHSSLEAVQRDVLKLSRLLK--NEQIQAVCADPFVGDKDKGQIVKELLSSWK---VNSYLAALLRMLIER 168 (237)
Q Consensus 94 YAkALfe~A~e~~~le~v~~eL~~l~~ll~--~~~l~~~L~nP~i~~e~K~~lL~~l~~~~~---~s~~~~nFL~lLie~ 168 (237)
..++..++|..-...-.-++|++.+.++-. |++....+ +|...|.++++... ++-.-.-.+-..+.+
T Consensus 350 q~~~~~~~a~~lr~~la~y~e~e~~~~~~~~~d~~~~~~i--------~~~~~i~~~L~Q~~~~~~~~~e~~~~l~a~~~ 421 (485)
T CHL00059 350 QIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQL--------ARGQRLRELLKQSQSAPLTVEEQVATIYTGTN 421 (485)
T ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHH--------HhHHHHHHHhcCCCCCCCCHHHHHHHHHHhcc
Confidence 335566666554444555666666666543 55555544 24444455554311 111111111123334
Q ss_pred CccchH-----HHHHHHHHHHHHHHCCeEEEEEEeccCCCHHHHHHHHHHHHHHh
Q 040346 169 NKVAMV-----SDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKRVQNLC 218 (237)
Q Consensus 169 ~Rl~lL-----~~I~~~f~~l~~~~~gi~~a~V~SA~~Lseeq~~kI~~~L~kk~ 218 (237)
|.++.+ .+....+.+.++.........+.+...|+++..++|.+.+++..
T Consensus 422 g~l~~~~~~~v~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~ 476 (485)
T CHL00059 422 GYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKTFTEEAEALLKEAIQEQL 476 (485)
T ss_pred CCcCccCHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 433322 12222222222221122222333346789998888888887654
No 39
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=29.09 E-value=2.5e+02 Score=26.69 Aligned_cols=62 Identities=8% Similarity=0.176 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHHHHHHCCeEEEEEE----eccCCCHHHHHHHHHHHHHHhCCc--eeEEEeeeCCCCC
Q 040346 173 MVSDVLEEFQRIYDDLIGTRVVFVS----SAKKMEEDQLFHIAKRVQNLCGAA--QVKIRNLIQEGVP 234 (237)
Q Consensus 173 lL~~I~~~f~~l~~~~~gi~~a~V~----SA~~Lseeq~~kI~~~L~kk~g~k--~V~L~~~VDpSLI 234 (237)
++..++++.....+...+....+|. |+.-|+.+++++|.+.+.+.++.. .+++..+.+|..+
T Consensus 72 y~~~L~~Ei~~~~~~~~~~~i~~i~~GGGTPs~l~~~~l~~Ll~~i~~~~~~~~~~~eitiE~~P~~l 139 (430)
T PRK08208 72 YLDALIRQAEQVAEALAPARFASFAVGGGTPTLLNAAELEKLFDSVERVLGVDLGNIPKSVETSPATT 139 (430)
T ss_pred HHHHHHHHHHHHHHHcCCCceeEEEEcCCccccCCHHHHHHHHHHHHHhCCCCCCCceEEEEeCcCcC
Confidence 4445555544433333333233443 556688999999999998877621 3567777777654
No 40
>PF03693 RHH_2: Uncharacterised protein family (UPF0156); InterPro: IPR022789 This family of proteins are about 80 amino acids in length and their function is unknown. The proteins contain a conserved GRY motif. This family appears to be related to ribbon-helix-helix DNA-binding proteins. ; PDB: 3KXE_C.
Probab=28.93 E-value=2.3e+02 Score=20.68 Aligned_cols=51 Identities=18% Similarity=0.264 Sum_probs=38.1
Q ss_pred CCCHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHCCeEEEEEEeccCCCHHHHHHHHHHHHHHh
Q 040346 153 KVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKRVQNLC 218 (237)
Q Consensus 153 ~~s~~~~nFL~lLie~~Rl~lL~~I~~~f~~l~~~~~gi~~a~V~SA~~Lseeq~~kI~~~L~kk~ 218 (237)
.+++.+..|+.-.|+.||..-..+++.+-..+..++ +..++.|++.|..-.
T Consensus 8 sL~~~~~~~i~~~V~sG~Y~s~SEvvR~aLRlle~~---------------e~~~~~Lr~~l~~g~ 58 (80)
T PF03693_consen 8 SLTPELEAFIEEQVASGRYSSASEVVREALRLLEER---------------EAKLEALREALQEGL 58 (80)
T ss_dssp ---HHHHHHHHHHHCTTS-SSHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHH
T ss_pred ecCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHH
Confidence 578899999999999999999999999988887765 245667777776544
No 41
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=28.24 E-value=4e+02 Score=29.65 Aligned_cols=66 Identities=17% Similarity=0.256 Sum_probs=41.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhccHHHHHHhcCCCCCHHHHHHHHHHHhcCCCC---CHHHHHHHHHH
Q 040346 95 AAALLDKALCHSSLEAVQRDVLKLSRLLKNEQIQAVCADPFVGDKDKGQIVKELLSSWKV---NSYLAALLRML 165 (237)
Q Consensus 95 AkALfe~A~e~~~le~v~~eL~~l~~ll~~~~l~~~L~nP~i~~e~K~~lL~~l~~~~~~---s~~~~nFL~lL 165 (237)
|+..|+.+. ....++.+...++..+++ ++++||.++.-+.+.-.++-.++++- .+ ++.+.++-.-+
T Consensus 1452 Aq~~~~~a~--as~~q~~~s~~el~~Li~--~v~~Flt~~~adp~si~~vA~~vL~l-~lp~tpeqi~~L~~~I 1520 (1758)
T KOG0994|consen 1452 AQRALEQAN--ASRSQMEESNRELRNLIQ--QVRDFLTQPDADPDSIEEVAEEVLAL-ELPLTPEQIQQLTGEI 1520 (1758)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHH--HHHHHhcCCCCCHHHHHHHHHHHHhc-cCCCCHHHHHHHHHHH
Confidence 344444442 333444444444444444 78899999999999999999999975 43 34555554433
No 42
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=28.20 E-value=2.4e+02 Score=25.95 Aligned_cols=62 Identities=6% Similarity=0.080 Sum_probs=40.8
Q ss_pred chHHHHHHHHHHHHHHH--CCeEEEEEE--eccCCCHHHHHHHHHHHHHHhCCceeEEEeeeCCCCC
Q 040346 172 AMVSDVLEEFQRIYDDL--IGTRVVFVS--SAKKMEEDQLFHIAKRVQNLCGAAQVKIRNLIQEGVP 234 (237)
Q Consensus 172 ~lL~~I~~~f~~l~~~~--~gi~~a~V~--SA~~Lseeq~~kI~~~L~kk~g~k~V~L~~~VDpSLI 234 (237)
.++..++++........ .++..+.+. |..-|+.+++.+|.+.+.+.+. ...++..+.+|..+
T Consensus 31 ~y~~~L~~Ei~~~~~~~~~~~v~~iyfGGGTPs~l~~~~l~~ll~~i~~~~~-~~~eitiE~nP~~~ 96 (350)
T PRK08446 31 EYMQALCLDLKFELEQFTDEKIESVFIGGGTPSTVSAKFYEPIFEIISPYLS-KDCEITTEANPNSA 96 (350)
T ss_pred HHHHHHHHHHHHHHhhccCCceeEEEECCCccccCCHHHHHHHHHHHHHhcC-CCceEEEEeCCCCC
Confidence 35566666655433222 233333333 5666999999999999998865 45788888888765
No 43
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=27.89 E-value=2.2e+02 Score=20.10 Aligned_cols=49 Identities=14% Similarity=0.122 Sum_probs=36.5
Q ss_pred cCccchHHHHHHHHHHHHHHHCCeEEEEEEec----------------cCCCHHHHHHHHHHHHHHhC
Q 040346 168 RNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSA----------------KKMEEDQLFHIAKRVQNLCG 219 (237)
Q Consensus 168 ~~Rl~lL~~I~~~f~~l~~~~~gi~~a~V~SA----------------~~Lseeq~~kI~~~L~kk~g 219 (237)
.+|-++|..|...|. ....++..|+|.|. ...++++.++|++.|.+.+|
T Consensus 8 ~Dr~gLfa~i~~~l~---~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~~~~~~~~~~l~~~L~~~L~ 72 (76)
T cd04927 8 SDRKGLLHDVTEVLY---ELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRREETYDYLRAVLG 72 (76)
T ss_pred CCCCCHHHHHHHHHH---HCCCeEEEEEEEECCCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 467778888877765 45677777888761 12466888999999999998
No 44
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=27.72 E-value=2.9e+02 Score=25.67 Aligned_cols=36 Identities=3% Similarity=0.025 Sum_probs=29.6
Q ss_pred eccCCCHHHHHHHHHHHHHHhCCceeEEEeeeCCCCC
Q 040346 198 SAKKMEEDQLFHIAKRVQNLCGAAQVKIRNLIQEGVP 234 (237)
Q Consensus 198 SA~~Lseeq~~kI~~~L~kk~g~k~V~L~~~VDpSLI 234 (237)
|+.-|+++++++|.+.+.+.+. ...++..+.+|+.+
T Consensus 66 TPs~L~~~~l~~ll~~i~~~~~-~~~eitiE~nP~~l 101 (353)
T PRK05904 66 TPNCLNDQLLDILLSTIKPYVD-NNCEFTIECNPELI 101 (353)
T ss_pred ccccCCHHHHHHHHHHHHHhcC-CCCeEEEEeccCcC
Confidence 7778999999999999998876 45677777888776
No 45
>PF04675 DNA_ligase_A_N: DNA ligase N terminus; InterPro: IPR012308 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalysing the formation of an internucleotide ester bond between phosphate and deoxyribose. It is active during DNA replication, DNA repair and DNA recombination. There are two forms of DNA ligase, one requires ATP (6.5.1.1 from EC), the other NAD (6.5.1.2 from EC), the latter being restricted to eubacteria. Eukaryotic, archaebacterial, viral and some eubacterial DNA ligases are ATP-dependent. The first step in the ligation reaction is the formation of a covalent enzyme-AMP complex. The co-factor ATP is cleaved to pyrophosphate and AMP, with the AMP being covalently joined to a highly conserved lysine residue in the active site of the ligase. The activated AMP residue is then transferred to the 5'phosphate of the nick, before the nick is sealed by phosphodiester-bond formation and AMP elimination [,]. Vertebrate cells encode three well-characterised DNA ligases (DNA ligases I, III and IV), all of which are related in structure and sequence. With the exception of the atypically small PBCV-1 viral enzyme, two regions of primary sequence are common to all members of the family. The catalytic region comprises six conserved sequence motifs (I, III, IIIa, IV, V-VI), motif I includes the lysine residue that is adenylated in the first step of the ligation reaction. The function of the second, less well-conserved region is unknown. When folded, each protein comprises of two distinct sub-domains: a large amino-terminal sub-domain ('domain 1') and a smaller carboxy-terminal sub-domain ('domain 2'). The ATP-binding site of the enzyme lies in the cleft between the two sub-domains. Domain 1 consists of two antiparallel beta sheets flanked by alpha helices, whereas domain 2 consists of a five-stranded beta barrel and a single alpha helix, which form the oligonucleotide-binding fold [, ]. This region is found in many but not all ATP-dependent DNA ligase enzymes (6.5.1.1 from EC). It is thought to be involved in DNA binding and in catalysis. In human DNA ligase I (P18858 from SWISSPROT), and in Saccharomyces cerevisiae (Baker's yeast) (P04819 from SWISSPROT), this region was necessary for catalysis, and separated from the amino terminus by targeting elements. In Vaccinia virus (P16272 from SWISSPROT) this region was not essential for catalysis, but deletion decreases the affinity for nicked DNA and decreased the rate of strand joining at a step subsequent to enzyme-adenylate formation []. ; GO: 0003677 DNA binding, 0003910 DNA ligase (ATP) activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 2CFM_A 3RR5_A 2HIX_A 2HIV_A 3L2P_A 1X9N_A 4EQ5_A 3GDE_A.
Probab=27.59 E-value=3.3e+02 Score=22.03 Aligned_cols=44 Identities=16% Similarity=0.215 Sum_probs=30.2
Q ss_pred CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCccchHHHHHH
Q 040346 135 FVGDKDKGQIVKELLSSWKVNSYLAALLRMLIERNKVAMVSDVLE 179 (237)
Q Consensus 135 ~i~~e~K~~lL~~l~~~~~~s~~~~nFL~lLie~~Rl~lL~~I~~ 179 (237)
.-+.++|.+++..++.. --..+..-+++++..+=|++.-...+-
T Consensus 129 ~~s~~~k~~~l~~ll~~-~s~~E~k~i~Riil~~lriG~~~~~il 172 (177)
T PF04675_consen 129 KGSQDEKIDILKELLRR-CSPEEAKWIVRIILKDLRIGVSEKTIL 172 (177)
T ss_dssp TTHHHHHHHHHHHHHTT-S-HHHHHHHHHHHTT--SSS--HHHHH
T ss_pred ccchHHHHHHHHHHHHh-CCHHHHHHHHHHHhCCCeeCccHHHHH
Confidence 44678899999999986 245688888889988888887665543
No 46
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=27.42 E-value=4.1e+02 Score=25.03 Aligned_cols=96 Identities=19% Similarity=0.212 Sum_probs=68.7
Q ss_pred CccchhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc---cH-HHHHHhcCCCCCHHHHHHHHHHHhcCC----CCCH
Q 040346 85 NSHQKPASGYAAALLDKALCHSSLEAVQRDVLKLSRLLK---NE-QIQAVCADPFVGDKDKGQIVKELLSSW----KVNS 156 (237)
Q Consensus 85 ~~~~~iA~rYAkALfe~A~e~~~le~v~~eL~~l~~ll~---~~-~l~~~L~nP~i~~e~K~~lL~~l~~~~----~~s~ 156 (237)
..+..+....+.+|++.+...++++....-|..+...-. .. -+..+|.++.....+ +|..|.+.+ .-..
T Consensus 207 LEh~~l~~~l~~~l~~~~~~~~d~~~~~a~lRAls~~~~~~~~~~~i~~~L~~~~~~~~e---~Li~IAgR~W~~L~d~~ 283 (340)
T PF12069_consen 207 LEHQPLPDKLAEALLERLEQAPDLELLSALLRALSSAPASDLVAILIDALLQSPRLCHPE---VLIAIAGRCWQWLKDPQ 283 (340)
T ss_pred hcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHcCCCchhHHHHHHHHHhcCcccCChH---HHHHHHhcCchhcCCHH
Confidence 446778999999999999887777777666666665332 12 366788888877555 555555553 2357
Q ss_pred HHHHHHHHHHHcCccchHHHHHHHHHH
Q 040346 157 YLAALLRMLIERNKVAMVSDVLEEFQR 183 (237)
Q Consensus 157 ~~~nFL~lLie~~Rl~lL~~I~~~f~~ 183 (237)
....||.-|++.+--.++..|+.....
T Consensus 284 ~l~~fle~LA~~~~~~lF~qlfaDLv~ 310 (340)
T PF12069_consen 284 LLRLFLERLAQQDDQALFNQLFADLVM 310 (340)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHh
Confidence 888999999999866777777776553
No 47
>TIGR01609 PF_unchar_267 Plasmodium falciparum uncharacterized protein TIGR01609. This model represents a family of at least four proteins in Plasmodium falciparum. An interesting feature is five perfectly conserved Trp residues.
Probab=27.07 E-value=2.3e+02 Score=23.51 Aligned_cols=41 Identities=24% Similarity=0.214 Sum_probs=34.7
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 040346 125 EQIQAVCADPFVGDKDKGQIVKELLSSWKVNSYLAALLRMLIE 167 (237)
Q Consensus 125 ~~l~~~L~nP~i~~e~K~~lL~~l~~~~~~s~~~~nFL~lLie 167 (237)
..+...|.||..+..+|..++...+. -..+.+.-||.++-+
T Consensus 102 ~~IN~~Lnd~~~sl~dKE~ii~~~l~--w~~~Df~~FL~~Vke 142 (146)
T TIGR01609 102 GHINSDLNDPSLTLVDKEYIVNIWIT--WTREDFEFFLEYLKE 142 (146)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 46778899999999999999999987 477888888887654
No 48
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=27.05 E-value=1.9e+02 Score=25.79 Aligned_cols=63 Identities=21% Similarity=0.305 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHHCCeEEEEEEeccCCCH-----HHHHHHHHHHHHHhC
Q 040346 157 YLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEE-----DQLFHIAKRVQNLCG 219 (237)
Q Consensus 157 ~~~nFL~lLie~~Rl~lL~~I~~~f~~l~~~~~gi~~a~V~SA~~Lse-----eq~~kI~~~L~kk~g 219 (237)
....|+.++-.+..-..+-.++.-|+.+.+..+....+.+..-...+. .+-+++.++|.....
T Consensus 176 ~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~l~~ 243 (254)
T PF04826_consen 176 VLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQALAN 243 (254)
T ss_pred chhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHHHHHc
Confidence 346788888888888999999999999988887776555533332221 233456666666553
No 49
>TIGR00439 ftsX putative protein insertion permease FtsX. FtsX is an integral membrane protein encoded in the same operon as signal recognition particle docking protein FtsY and FtsE. It belongs to a family of predicted permeases and may play a role in the insertion of proteins required for potassium transport, cell division, and other activities. FtsE is a hydrophilic nucleotide-binding protein that associates with the inner membrane by means of association with FtsX.
Probab=26.42 E-value=1.9e+02 Score=26.49 Aligned_cols=53 Identities=9% Similarity=0.047 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHHHHHCCeEEEEEEeccCCCHHHHHHHHHHHHHHhCCceeEE
Q 040346 173 MVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCGAAQVKI 225 (237)
Q Consensus 173 lL~~I~~~f~~l~~~~~gi~~a~V~SA~~Lseeq~~kI~~~L~kk~g~k~V~L 225 (237)
.+--+........+...+..+++|+-...+++++.+++.++|++.-|-++++.
T Consensus 47 ~~~l~~~n~~~~~~~~~~~~~i~vyl~~~~~~~~~~~l~~~l~~~~~V~~v~~ 99 (309)
T TIGR00439 47 VMYLGIKNGQSALTQLYPSPQITVYLEKALAQSDADTVVSLLTRDKGVENINY 99 (309)
T ss_pred HHHHHHHHHHHHHHhhccCceEEEEeCCCCCHHHHHHHHHHHhCCCCccEEEE
Confidence 34445666777788888888999999999999999999999998776445554
No 50
>PF12645 HTH_16: Helix-turn-helix domain; InterPro: IPR024760 This domain appears to be a helix-turn-helix domain, suggesting a transcriptional regulatory protein. Some proteins with this domain are annotated as conjugative transposon proteins.
Probab=25.72 E-value=2.3e+02 Score=19.85 Aligned_cols=46 Identities=11% Similarity=0.241 Sum_probs=35.9
Q ss_pred HHcCccchHHHHHHHHHHHHHH--------HCCeEEEEEEeccCCCHHHHHHHHHHHHHH
Q 040346 166 IERNKVAMVSDVLEEFQRIYDD--------LIGTRVVFVSSAKKMEEDQLFHIAKRVQNL 217 (237)
Q Consensus 166 ie~~Rl~lL~~I~~~f~~l~~~--------~~gi~~a~V~SA~~Lseeq~~kI~~~L~kk 217 (237)
+.+|--..+.+|++.|.-+... ..|...+.| +++-.++|+.+|-+.
T Consensus 7 A~~GD~~A~~~IL~~y~~yI~kls~r~~~d~~g~~~~~v------Dedl~q~l~~kLi~~ 60 (65)
T PF12645_consen 7 AKQGDPEAMEEILKHYEPYISKLSTRTLYDEYGNVYGYV------DEDLKQRLEIKLIEA 60 (65)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHHHhhcccccCCcCcee------CHHHHHHHHHHHHHH
Confidence 5667777888999999988875 666666666 899999999887654
No 51
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog
Probab=25.59 E-value=4.4e+02 Score=23.67 Aligned_cols=130 Identities=11% Similarity=0.093 Sum_probs=60.7
Q ss_pred cchhhhHHHHHHHHHHHh----------cCCHHH-HHHHHHHHHHHhc-cHHHHHHhcCCCCCHH---HHHHHHHHHhcC
Q 040346 87 HQKPASGYAAALLDKALC----------HSSLEA-VQRDVLKLSRLLK-NEQIQAVCADPFVGDK---DKGQIVKELLSS 151 (237)
Q Consensus 87 ~~~iA~rYAkALfe~A~e----------~~~le~-v~~eL~~l~~ll~-~~~l~~~L~nP~i~~e---~K~~lL~~l~~~ 151 (237)
...|...||+.|-.+|.. .|++.. |..-+..+..+-. ...+..-|.+..+..- .|......++++
T Consensus 31 RA~IE~~Yak~L~~Lakk~~~~~~~~~~~Gtl~~aw~~i~~etE~ia~~H~~la~~L~~e~~e~~r~~qk~~~~k~~~~~ 110 (258)
T cd07680 31 RAKIEKAYGQQLTDWAKRWRQLIEKGPQYGSLERAWGAIMTEADKVSELHQEVKNNLLNEDLEKVKNWQKDAYHKQIMGG 110 (258)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Confidence 356889999999999983 244442 3333333344434 5566665544322211 111222222221
Q ss_pred CC----CCHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHCCeE--EEEEEeccCCCHHHHHHHHHHHHHHh
Q 040346 152 WK----VNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTR--VVFVSSAKKMEEDQLFHIAKRVQNLC 218 (237)
Q Consensus 152 ~~----~s~~~~nFL~lLie~~Rl~lL~~I~~~f~~l~~~~~gi~--~a~V~SA~~Lseeq~~kI~~~L~kk~ 218 (237)
.+ +...+...-+-+. .++.-+..--+.|..-+.+..+-. ....-...-++.+|++++..++.+.-
T Consensus 111 ~ke~K~~e~~~~KaQK~~~--k~~k~v~~sKk~Ye~~Cke~~~A~~~~~~a~~d~~~s~~q~eK~~~k~~k~~ 181 (258)
T cd07680 111 FKETKEAEDGFRKAQKPWA--KKMKELEAAKKAYHLACKEEKLAMTREANSKAEQSVTPEQQKKLQDKVDKCK 181 (258)
T ss_pred hHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHH
Confidence 00 0011111111000 122235555666776665444321 11111223467999999999988754
No 52
>PF15603 Imm45: Immunity protein 45
Probab=25.56 E-value=1.1e+02 Score=22.74 Aligned_cols=27 Identities=4% Similarity=0.065 Sum_probs=22.2
Q ss_pred CCCHHHHHHHHHHHHHHhCCceeEEEe
Q 040346 201 KMEEDQLFHIAKRVQNLCGAAQVKIRN 227 (237)
Q Consensus 201 ~Lseeq~~kI~~~L~kk~g~k~V~L~~ 227 (237)
+++++++++|.+++.+.+..+.+.+..
T Consensus 55 ~it~~e~q~II~aI~~~~~~~~~~v~f 81 (82)
T PF15603_consen 55 PITIAERQKIIEAIEKYFSERGMTVDF 81 (82)
T ss_pred ccCHHHHHHHHHHHHHHHhcCceEEEe
Confidence 899999999999999988655665543
No 53
>cd08809 CARD_CARD9 Caspase activation and recruitment domain of CARD9-like proteins. Caspase activation and recruitment domain (CARD) similar to that found in CARD9. CARD9 is a central regulator of innate immunity and is highly expressed in dendritic cells and macrophages. Together with BCL10 (B-cell lymphoma 10) and Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1), it forms the M-CBM signalosome (the CBM complex in myeloid immune cells), which mediates activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. CARD9 associates with BCL10 via a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating wi
Probab=25.53 E-value=1.3e+02 Score=22.67 Aligned_cols=44 Identities=25% Similarity=0.267 Sum_probs=33.0
Q ss_pred HhccHHHHHHhcCCC-CCHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 040346 121 LLKNEQIQAVCADPF-VGDKDKGQIVKELLSSWKVNSYLAALLRML 165 (237)
Q Consensus 121 ll~~~~l~~~L~nP~-i~~e~K~~lL~~l~~~~~~s~~~~nFL~lL 165 (237)
++...+..+++++|. .....|...|-+|+.. .-..-+..||..|
T Consensus 30 Vl~~~deEeI~~~~~~~~~~~kvg~LLDIL~~-rG~~~f~aFLeSL 74 (86)
T cd08809 30 VLNSDDEEQVLNDPSLVIRKRKVGVLLDILQR-TGLKGYEAFLESL 74 (86)
T ss_pred CCChhhHHHHHcCcccchHHHHHHHHHHHHHh-cCchHHHHHHHHH
Confidence 445567888999988 5667788888889886 5566777888654
No 54
>PF09688 Wx5_PLAF3D7: Protein of unknown function (Wx5_PLAF3D7); InterPro: IPR006496 This entry represents a set of protein sequences found in Plasmodium species. An interesting feature is five perfectly conserved Trp residues.
Probab=25.22 E-value=2.5e+02 Score=23.17 Aligned_cols=41 Identities=20% Similarity=0.232 Sum_probs=34.1
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 040346 125 EQIQAVCADPFVGDKDKGQIVKELLSSWKVNSYLAALLRMLIE 167 (237)
Q Consensus 125 ~~l~~~L~nP~i~~e~K~~lL~~l~~~~~~s~~~~nFL~lLie 167 (237)
..+...|.||..+..+|..++..++. .....+.-||..+.+
T Consensus 103 ~~In~~L~n~n~s~~~kE~ii~~~l~--w~~~DF~~FL~~vk~ 143 (147)
T PF09688_consen 103 NTINKKLNNPNYSLEDKEAIINFWLE--WAKEDFEVFLNIVKE 143 (147)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 35667889999999999999999997 477888888887653
No 55
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.16 E-value=1.7e+02 Score=29.61 Aligned_cols=71 Identities=8% Similarity=0.047 Sum_probs=42.7
Q ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHHCCeEEEEEEeccCCCHHHHHHHHHHHHHHhCCceeEEEeeeCC
Q 040346 160 ALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCGAAQVKIRNLIQE 231 (237)
Q Consensus 160 nFL~lLie~~Rl~lL~~I~~~f~~l~~~~~gi~~a~V~SA~~Lseeq~~kI~~~L~kk~g~k~V~L~~~VDp 231 (237)
..+.-|++...+.-+..-+-..-++.....+.+.-.+--..=+++..+++|+..|++.|| +.+.|+..+..
T Consensus 499 ~~v~qL~~~~~l~gl~~~LA~nsel~~~~~~~~~L~~~~~~L~~~~~~~rL~~AL~~~~G-~~~~l~i~ig~ 569 (618)
T PRK14951 499 ATVQQLAAAEAITALARELALQSELVARDGDQWLLRVERESLNQPGARERLRAALEAALG-HAVRLEVEVGA 569 (618)
T ss_pred HHHHHHHhcccccHHHHHHHhcccccccCCCeEEecccchhhcChHHHHHHHHHHHHHhC-CCeeEEEEecC
Confidence 344444444333333333333333444444544443334445568889999999999999 89999888764
No 56
>PRK07738 flagellar protein FlaG; Provisional
Probab=23.86 E-value=1.1e+02 Score=24.23 Aligned_cols=34 Identities=12% Similarity=0.256 Sum_probs=28.3
Q ss_pred cCCCHHHHHHHHHHHHHHhCCceeEEEeeeCCCC
Q 040346 200 KKMEEDQLFHIAKRVQNLCGAAQVKIRNLIQEGV 233 (237)
Q Consensus 200 ~~Lseeq~~kI~~~L~kk~g~k~V~L~~~VDpSL 233 (237)
.++++++++++.++|.+.+......|++.+|+.+
T Consensus 41 k~~s~eel~~aveklN~~l~~~~~~L~F~vdeet 74 (117)
T PRK07738 41 YEVSKEDLEEVVDGMNELLEPSQTSLKFELHEKL 74 (117)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCceEEEEecCC
Confidence 4889999999999999988756778888888764
No 57
>TIGR02670 cas_csx8 CRISPR-associated protein Csx8 (provisional). In three genomes so far, a member of this protein appears in the midst of a CRISPR-associated (cas) gene operon, immediately upstream of a member of family TIGR01875 (CRISPR-associated autoregulator, DevR family). The genomes so far are Nocardia farcinica IFM10152, Clostridium perfringens SM101, and Clostridium tetani E88.
Probab=23.77 E-value=1.5e+02 Score=28.76 Aligned_cols=67 Identities=10% Similarity=0.267 Sum_probs=52.0
Q ss_pred cHHHHHHhcCCCCCHHHHH---------HHHHHHhcCCCCCHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHCC
Q 040346 124 NEQIQAVCADPFVGDKDKG---------QIVKELLSSWKVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIG 190 (237)
Q Consensus 124 ~~~l~~~L~nP~i~~e~K~---------~lL~~l~~~~~~s~~~~nFL~lLie~~Rl~lL~~I~~~f~~l~~~~~g 190 (237)
+..+..+|..+.++.+... .+++++|++.+++.+-..=+.-|++.+|..++.+-++.=..+|+...+
T Consensus 71 h~~~e~~l~~~e~s~e~i~~i~~~~~~nti~kkvf~k~kfdg~n~~eil~~i~~nr~~~i~etfr~kk~~y~n~~n 146 (441)
T TIGR02670 71 HKKVENILKHKEFTEEIIKSINEKLSANTVMKKVFGKIKFDGTNKDEILDLIDKNRHSLIKETFRRKKDLYDNYCN 146 (441)
T ss_pred HHHHHHHhcccccCHHHHHHHHHhhhhhHHHHHHHhccCCCCCCHHHHHHHHHhhHHHHHHHHHhhhhhHHHhccc
Confidence 4688889999999988765 458888887666655555566678999999999998887777776554
No 58
>PF02152 FolB: Dihydroneopterin aldolase; InterPro: IPR006157 Dihydroneopterin aldolase catalyses the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate. In the opportunistic pathogen Pneumocystis carinii, dihydroneopterin aldolase function is expressed as the N-terminal portion of the multifunctional folic acid synthesis protein (Fas). This region encompasses two domains, FasA and FasB, which are 27% amino acid identical. FasA and FasB also share significant amino acid sequence similarity with bacterial dihydroneopterin aldolases. This region consists of two tandem sequences each homologous to folB and which form tetramers [].; GO: 0004150 dihydroneopterin aldolase activity, 0006760 folic acid-containing compound metabolic process; PDB: 1SQL_P 2O90_A 1B9L_A 1RSI_A 2NM2_C 1RRY_A 1RRW_A 1RS2_A 2DHN_A 1DHN_A ....
Probab=23.75 E-value=3.2e+02 Score=20.50 Aligned_cols=46 Identities=20% Similarity=0.201 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHCC-eEEEEEEeccC
Q 040346 156 SYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIG-TRVVFVSSAKK 201 (237)
Q Consensus 156 ~~~~nFL~lLie~~Rl~lL~~I~~~f~~l~~~~~g-i~~a~V~SA~~ 201 (237)
..+.+.+.-+++++++.+|+..++...+.+...-+ +..++|....|
T Consensus 51 ~~l~~~i~~~~~~~~f~llE~la~~i~~~i~~~~~~v~~v~v~v~Kp 97 (113)
T PF02152_consen 51 AELAEAIRELVENSHFNLLETLAERIADRILKEFPQVQSVTVKVRKP 97 (113)
T ss_dssp HHHHHHHHHHHHSSEESSHHHHHHHHHHHHHHHTTTESEEEEEEEET
T ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHhCCCccEEEEEEECC
Confidence 46667778888999999999999999999888876 77777776554
No 59
>COG0023 SUI1 Translation initiation factor 1 (eIF-1/SUI1) and related proteins [Translation, ribosomal structure and biogenesis]
Probab=23.64 E-value=1.2e+02 Score=23.62 Aligned_cols=31 Identities=16% Similarity=0.298 Sum_probs=27.5
Q ss_pred CCeEEEEEEeccCCCHHHHHHHHHHHHHHhC
Q 040346 189 IGTRVVFVSSAKKMEEDQLFHIAKRVQNLCG 219 (237)
Q Consensus 189 ~gi~~a~V~SA~~Lseeq~~kI~~~L~kk~g 219 (237)
++...+++++-.++.+..+++|.+.|+++++
T Consensus 37 r~gK~VTiI~Gld~~~~dlk~Lak~LKk~ca 67 (104)
T COG0023 37 RKGKTVTIIEGLDLKDIDLKKLAKELKKKCA 67 (104)
T ss_pred cCCcEEEEEeCcccchhhHHHHHHHHHHHcC
Confidence 4666788889999999999999999999986
No 60
>PRK08868 flagellar protein FlaG; Provisional
Probab=23.43 E-value=1e+02 Score=25.50 Aligned_cols=34 Identities=6% Similarity=0.223 Sum_probs=25.8
Q ss_pred cCCCHHHHHHHHHHHHHHhCCceeEEEeeeCCCC
Q 040346 200 KKMEEDQLFHIAKRVQNLCGAAQVKIRNLIQEGV 233 (237)
Q Consensus 200 ~~Lseeq~~kI~~~L~kk~g~k~V~L~~~VDpSL 233 (237)
.++++++++++.+.|.+.+..-...|++.||++.
T Consensus 66 ~e~~~eel~~aVeklNe~~~~~n~~L~F~vdeet 99 (144)
T PRK08868 66 QELNREELEKMVEQMNEFVKSINKGLSFRVDEES 99 (144)
T ss_pred cccCHHHHHHHHHHHHHHHHhhcCceEEEEecCC
Confidence 3567788888888888877655677888888763
No 61
>PF09384 UTP15_C: UTP15 C terminal; InterPro: IPR018983 This entry represents the C-terminal domain of the U3 small nucleolar RNA-associated protein 15 (UTP15). This protein is involved in nucleolar processing of pre-18S ribosomal RNA, and is required for optimal pre-ribosomal RNA transcription by RNA polymerase I together with a subset of U3 proteins required for transcription (t-UTPs). UTP15 is a component of the ribosomal small subunit (SSU) processome, which is a large ribonucleoprotein (RNP) required for processing of precursors to the small subunit RNA, the 18S, of the ribosome [, ]. This domain is found C-terminal to the WD40 repeat (IPR001680 from INTERPRO). UTP15 associates with U3 snoRNA, which is ubiquitous in eukaryotes and is required for nucleolar processing of pre-18S ribosomal RNA []. ; GO: 0006364 rRNA processing, 0005730 nucleolus
Probab=23.24 E-value=4.1e+02 Score=21.52 Aligned_cols=78 Identities=23% Similarity=0.305 Sum_probs=39.2
Q ss_pred hhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc--
Q 040346 91 ASGYAAALLDKALCHSSLEAVQRDVLKLSRLLKNEQIQAVCADPFVGDKDKGQIVKELLSSWKVNSYLAALLRMLIER-- 168 (237)
Q Consensus 91 A~rYAkALfe~A~e~~~le~v~~eL~~l~~ll~~~~l~~~L~nP~i~~e~K~~lL~~l~~~~~~s~~~~nFL~lLie~-- 168 (237)
.-+|++||=.+-.....-+.+..-|+++. .- ..|...+.+ .-...+..+|..++.+
T Consensus 31 ~F~y~~ALD~aL~~~~~p~~~vavl~EL~---~R------------------~~L~~AL~~-Rde~~L~piL~Fl~k~i~ 88 (148)
T PF09384_consen 31 KFRYKKALDAALVKNKSPEVVVAVLEELI---RR------------------GALRAALAG-RDEESLEPILKFLIKNIT 88 (148)
T ss_pred cCCHHHHHHHHHhcCCChHHHHHHHHHHH---Hc------------------cHHHHHHHh-CCHHHHHHHHHHHHHhCC
Confidence 45788888766645555555554444443 21 122223332 2333444444444332
Q ss_pred --CccchHHHHHHHHHHHHHHHCC
Q 040346 169 --NKVAMVSDVLEEFQRIYDDLIG 190 (237)
Q Consensus 169 --~Rl~lL~~I~~~f~~l~~~~~g 190 (237)
+-...+-+++..+.++|....|
T Consensus 89 ~pr~~~~l~~v~~~ildiY~~~~~ 112 (148)
T PF09384_consen 89 DPRYTRILVDVANIILDIYSPVIG 112 (148)
T ss_pred CcccHHHHHHHHHHHHHHHHHHhc
Confidence 3345566666666666665543
No 62
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=23.17 E-value=5.8e+02 Score=23.28 Aligned_cols=55 Identities=15% Similarity=0.312 Sum_probs=42.2
Q ss_pred CCCHHHHHHHHHHHHcC----ccchHHHHHHHHHHHHHHHCCeEEEEEEeccCCCHHHHHHHHHHHHH
Q 040346 153 KVNSYLAALLRMLIERN----KVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKRVQN 216 (237)
Q Consensus 153 ~~s~~~~nFL~lLie~~----Rl~lL~~I~~~f~~l~~~~~gi~~a~V~SA~~Lseeq~~kI~~~L~k 216 (237)
+++..-+-||..|+..+ ..-...+|.+.|..++... |. .|++..+...+...|..
T Consensus 293 ~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~-~~--------~~~~~~~~~~~l~~L~~ 351 (394)
T PRK00411 293 TLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEEL-GY--------EPRTHTRFYEYINKLDM 351 (394)
T ss_pred cCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHc-CC--------CcCcHHHHHHHHHHHHh
Confidence 57888888888887654 3457999999999998543 43 47788888888888775
No 63
>TIGR01158 SUI1_rel translation initation factor SUI1, putative, prokaryotic. This family of archaeal and bacterial proteins is homologous to the eukaryotic translation intiation factor SUI1 involved in directing the ribosome to the proper start site of translation by functioning in concert with eIF-2 and the initiator tRNA-Met.
Probab=23.07 E-value=1.4e+02 Score=22.98 Aligned_cols=31 Identities=19% Similarity=0.317 Sum_probs=27.9
Q ss_pred CCeEEEEEEeccCCCHHHHHHHHHHHHHHhC
Q 040346 189 IGTRVVFVSSAKKMEEDQLFHIAKRVQNLCG 219 (237)
Q Consensus 189 ~gi~~a~V~SA~~Lseeq~~kI~~~L~kk~g 219 (237)
++...++|++-.++.+..++.+.+.|++++|
T Consensus 35 r~gK~VTvV~Gl~~~~~~l~~l~k~LKk~~g 65 (101)
T TIGR01158 35 RKGKGVTIIEGLDLSDIDLKELAKELKSKCG 65 (101)
T ss_pred CCCCEEEEEeCCcCchhhHHHHHHHHHHHhc
Confidence 5677889999999999999999999999996
No 64
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=22.98 E-value=6e+02 Score=24.64 Aligned_cols=80 Identities=11% Similarity=0.046 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc-cHHHHHHhcCCCCCHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHc
Q 040346 92 SGYAAALLDKALCHSSLEAVQRDVLKLSRLLK-NEQIQAVCADPFVGDKDKGQIVKELLSSW--KVNSYLAALLRMLIER 168 (237)
Q Consensus 92 ~rYAkALfe~A~e~~~le~v~~eL~~l~~ll~-~~~l~~~L~nP~i~~e~K~~lL~~l~~~~--~~s~~~~nFL~lLie~ 168 (237)
..|+++++.+-....+.+.+.--|..+.+++. +|....+|.+-.....+....+-.++... -+.....++|..|+..
T Consensus 52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~ 131 (429)
T cd00256 52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACF 131 (429)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhc
Confidence 68999999999888999999999999999998 88777766543222122222222244320 1234555666666655
Q ss_pred Ccc
Q 040346 169 NKV 171 (237)
Q Consensus 169 ~Rl 171 (237)
+..
T Consensus 132 ~~~ 134 (429)
T cd00256 132 GLA 134 (429)
T ss_pred Ccc
Confidence 443
No 65
>PRK11026 ftsX cell division ABC transporter subunit FtsX; Provisional
Probab=22.72 E-value=2.4e+02 Score=25.73 Aligned_cols=53 Identities=11% Similarity=0.134 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHHHHHCCeEEEEEEeccCCCHHHHHHHHHHHHHHhCCceeEE
Q 040346 173 MVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCGAAQVKI 225 (237)
Q Consensus 173 lL~~I~~~f~~l~~~~~gi~~a~V~SA~~Lseeq~~kI~~~L~kk~g~k~V~L 225 (237)
.+--+......+.+...+..++.|+-...+++++.+++.+.|++.-|-++++.
T Consensus 47 ~~~l~~~n~~~~~~~~~~~~ei~vyl~~~~~~~~~~~l~~~L~~~~~V~~v~~ 99 (309)
T PRK11026 47 VCYLVWKNVNQAATQWYPSPQLTVYLDKTLDDDAANAVVEQLKAEDGVEKVNY 99 (309)
T ss_pred HHHHHHHHHHHHHHhhccCceEEEEECCCCCHHHHHHHHHHHhCCCCcceEEE
Confidence 33445556677778888888899999999999999999999988766445544
No 66
>PRK11245 folX D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase; Provisional
Probab=22.37 E-value=3.1e+02 Score=21.24 Aligned_cols=46 Identities=11% Similarity=0.098 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHCCeEEEEEEeccC
Q 040346 156 SYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKK 201 (237)
Q Consensus 156 ~~~~nFL~lLie~~Rl~lL~~I~~~f~~l~~~~~gi~~a~V~SA~~ 201 (237)
..+.+.+.-++++++..+|+.+++...+.+....+...++|.-..|
T Consensus 58 ~~v~~~i~~~v~~~~~~llE~la~~Ia~~i~~~~~v~~v~v~v~Kp 103 (120)
T PRK11245 58 RTITKNIIQHVENNRFSLLEKLTQDVLDIAREHPWVTYAEVEIDKP 103 (120)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHccCCccEEEEEEECC
Confidence 3566777777888899999999999888888888888888876654
No 67
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=22.04 E-value=4.7e+02 Score=25.87 Aligned_cols=20 Identities=5% Similarity=0.212 Sum_probs=15.8
Q ss_pred ccCCCHHHHHHHHHHHHHHh
Q 040346 199 AKKMEEDQLFHIAKRVQNLC 218 (237)
Q Consensus 199 A~~Lseeq~~kI~~~L~kk~ 218 (237)
...|+++..++|.+.+++..
T Consensus 478 ~~~l~~~~~~~L~~~i~~~~ 497 (502)
T PRK09281 478 TKDLSDEIEAKLKAAIEEFK 497 (502)
T ss_pred cCCCCHHHHHHHHHHHHHHH
Confidence 47799998888888887654
No 68
>PRK13912 nuclease NucT; Provisional
Probab=22.03 E-value=4.5e+02 Score=21.61 Aligned_cols=68 Identities=18% Similarity=0.237 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHcCccchHH----HHHHHHHHHHHHHCCeEEEEEEeccCCCHHHHHHHHHHHHHHhCCceeEEEeeeCC
Q 040346 157 YLAALLRMLIERNKVAMVS----DVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCGAAQVKIRNLIQE 231 (237)
Q Consensus 157 ~~~nFL~lLie~~Rl~lL~----~I~~~f~~l~~~~~gi~~a~V~SA~~Lseeq~~kI~~~L~kk~g~k~V~L~~~VDp 231 (237)
.+...|.++....++...| ++...+.++.+..+..+...++. +++ ..|.+.|.+... +-|.++..+|.
T Consensus 10 ~~~~~~~~~~~~~~~~~~P~~~~~~~~~l~~~I~~Ak~sI~i~~Y~---~~~---~~i~~aL~~Aa~-RGV~VrIlld~ 81 (177)
T PRK13912 10 LLVGCLGVLQAKSSLYFLPYEQKDALNKLVSLISNARSSIKIAIYS---FTH---KDIAKALKSAAK-RGVKISIIYDY 81 (177)
T ss_pred HHHHhhhhhhccceEEECCCChHHHHHHHHHHHHhcccEEEEEEEE---Ech---HHHHHHHHHHHH-CCCEEEEEEeC
Confidence 4456778888888888888 56777888888888776665543 232 356666666555 55777777775
No 69
>PRK11702 hypothetical protein; Provisional
Probab=21.87 E-value=4e+02 Score=20.93 Aligned_cols=39 Identities=13% Similarity=0.154 Sum_probs=30.5
Q ss_pred eEEEEEEe--ccCCCHHHHHHHHHHHHHHhCCceeEEEeeeC
Q 040346 191 TRVVFVSS--AKKMEEDQLFHIAKRVQNLCGAAQVKIRNLIQ 230 (237)
Q Consensus 191 i~~a~V~S--A~~Lseeq~~kI~~~L~kk~g~k~V~L~~~VD 230 (237)
...+-|.+ .-..++++++.+++-|+.+ +.++|++..-+|
T Consensus 64 ~~eG~vc~~~~gs~tEe~R~~V~~WL~~r-~v~~v~vseL~D 104 (108)
T PRK11702 64 AWEGLICLQKIGKCTEEHRALVKKWLEGR-KLTDVEVSELFD 104 (108)
T ss_pred eEEEEEeecccCCCCHHHHHHHHHHHHhC-CCceEEeeccch
Confidence 34455554 4578999999999999998 767888887776
No 70
>COG0056 AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion]
Probab=21.27 E-value=1.5e+02 Score=29.21 Aligned_cols=115 Identities=11% Similarity=0.090 Sum_probs=63.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhc--cHHHHHHhcCCCCCHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHcCc
Q 040346 96 AALLDKALCHSSLEAVQRDVLKLSRLLK--NEQIQAVCADPFVGDKDKGQIVKELLSSWK---VNSYLAALLRMLIERNK 170 (237)
Q Consensus 96 kALfe~A~e~~~le~v~~eL~~l~~ll~--~~~l~~~L~nP~i~~e~K~~lL~~l~~~~~---~s~~~~nFL~lLie~~R 170 (237)
+|+-++|..-...-.-+.||..+.++-. |+.-++.| ++.+.+.++++... ++.+..-.+-.++.+|-
T Consensus 373 kamkkvag~lrl~laqYrel~afsqf~sdLd~~T~~~l--------~~G~r~~ellkQ~~~~p~sv~~qv~ilya~~~G~ 444 (504)
T COG0056 373 KAMKKVAGSLRLILAQYRELEAFSQFGSDLDKATRKQL--------ERGKRLTELLKQPQYSPLSVEEQVLILYAGTNGY 444 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhCHHHHHHH--------HccHHHHHHhcCCCCCCccHHHHHHHHHHHhcCc
Confidence 3444555322222233455555555443 45545544 34556777776633 34555666667777777
Q ss_pred cchH--HHHHHHHHHHH---HHHCCeEEEEEEeccCCCHHHHHHHHHHHHHHh
Q 040346 171 VAMV--SDVLEEFQRIY---DDLIGTRVVFVSSAKKMEEDQLFHIAKRVQNLC 218 (237)
Q Consensus 171 l~lL--~~I~~~f~~l~---~~~~gi~~a~V~SA~~Lseeq~~kI~~~L~kk~ 218 (237)
++-+ .+|.+-...++ +.....+.-.+.+..+|+++..+.+++.+.+..
T Consensus 445 ld~v~v~~v~~fe~~l~~~~~~~~~~~~~~I~~~~~l~~~~e~~l~~~i~~f~ 497 (504)
T COG0056 445 LDDVPVEKVADFEKELLAYLRSDHKELLEEIRTTKELDDEIEAKLKAAIKEFK 497 (504)
T ss_pred ccCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Confidence 7665 33333222222 222223444567788999998888888887654
No 71
>PF06918 DUF1280: Protein of unknown function (DUF1280); InterPro: IPR009689 This family represents a conserved region approximately 200 residues long within a number of proteins of unknown function that seem to be specific to Caenorhabditis elegans.
Probab=21.25 E-value=1.2e+02 Score=26.70 Aligned_cols=66 Identities=11% Similarity=0.252 Sum_probs=46.9
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHCCeEEEEEEeccCCCHHHHHHHHHHHHHHhC
Q 040346 143 QIVKELLSSWKVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCG 219 (237)
Q Consensus 143 ~lL~~l~~~~~~s~~~~nFL~lLie~~Rl~lL~~I~~~f~~l~~~~~gi~~a~V~SA~~Lseeq~~kI~~~L~kk~g 219 (237)
+.++.+.++..++..+..|++.+.+.+.+..--. ..-.....+++...|++.+++.+++.+++.+|
T Consensus 17 ~~iq~ivg~~d~~~Fl~df~k~l~k~~~~sfk~~-----------LS~~etf~~k~k~~LSd~~lk~~K~~~k~~lg 82 (224)
T PF06918_consen 17 KAIQQIVGEEDVDQFLRDFIKFLDKSGEFSFKFK-----------LSPEETFILKVKFNLSDGFLKKFKKFLKEFLG 82 (224)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHhccCcccccccc-----------CChhheEEEEEEecCCHHHHHHHHHHHHHhCC
Confidence 3455556555677888889988888886544321 11122345788899999999999999999887
No 72
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=20.91 E-value=5e+02 Score=23.96 Aligned_cols=62 Identities=13% Similarity=0.169 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHHHHHH----CCeEEEEEE--eccCCCHHHHHHHHHHHHHHhCC-ceeEEEeeeCCCCC
Q 040346 173 MVSDVLEEFQRIYDDL----IGTRVVFVS--SAKKMEEDQLFHIAKRVQNLCGA-AQVKIRNLIQEGVP 234 (237)
Q Consensus 173 lL~~I~~~f~~l~~~~----~gi~~a~V~--SA~~Lseeq~~kI~~~L~kk~g~-k~V~L~~~VDpSLI 234 (237)
++..+.++........ ..+..+.+- |..-|+.+++.+|.+.+.+.++. ..+++..+.+|..+
T Consensus 38 Y~~~l~~Ei~~~~~~~~~~~~~i~~i~~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~e~~p~~i 106 (375)
T PRK05628 38 YLDALRAELELAAAVLGDPAPPVSTVFVGGGTPSLLGAEGLARVLDAVRDTFGLAPGAEVTTEANPEST 106 (375)
T ss_pred HHHHHHHHHHHHHHhhccCCCceeEEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCCC
Confidence 5566666655444433 123333333 66678999999999999998762 34677777788755
No 73
>PRK07165 F0F1 ATP synthase subunit alpha; Validated
Probab=20.75 E-value=3.2e+02 Score=27.14 Aligned_cols=45 Identities=16% Similarity=0.002 Sum_probs=20.9
Q ss_pred cHHHHHHhcCCC---CCHHHHHHHHHHHhcC----CCCCHHHHHHHHHHHHc
Q 040346 124 NEQIQAVCADPF---VGDKDKGQIVKELLSS----WKVNSYLAALLRMLIER 168 (237)
Q Consensus 124 ~~~l~~~L~nP~---i~~e~K~~lL~~l~~~----~~~s~~~~nFL~lLie~ 168 (237)
-+.+.++|.-+. .+.++-..++..+..+ ....+.+..|..-|++.
T Consensus 389 g~~i~~~L~Q~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 440 (507)
T PRK07165 389 GKMIEKMFNQKGFSLYSYRFVLLISKLISWGLLKDVKDEQKALDFIDYLIEN 440 (507)
T ss_pred HHHHHHHhCCCCCCCCCHHHHHHHHHHHHhhhhhhCCcHHHHHHHHHHHHHh
Confidence 456666776665 3333333322222221 11224555666666655
No 74
>cd02685 MIT_C MIT_C; domain found C-terminal to MIT (contained within Microtubule Interacting and Trafficking molecules) domains, as well as in some bacterial proteins. The function of this domain is unknown.
Probab=20.73 E-value=4.6e+02 Score=21.73 Aligned_cols=45 Identities=4% Similarity=0.091 Sum_probs=25.1
Q ss_pred CCeEEEEEEeccC-CCHHHHHHHHHHHHHHhCCceeEEEeeeCCCC
Q 040346 189 IGTRVVFVSSAKK-MEEDQLFHIAKRVQNLCGAAQVKIRNLIQEGV 233 (237)
Q Consensus 189 ~gi~~a~V~SA~~-Lseeq~~kI~~~L~kk~g~k~V~L~~~VDpSL 233 (237)
...+.+.++|... -+.++....-+.|++-+....|.++.+.|++|
T Consensus 50 ~~~~~i~LvT~~d~~~~~~Q~~~l~~i~~sl~~~gI~~~~~f~~ti 95 (148)
T cd02685 50 CELKYIHLVTGEDEDNGKQQIEALEEIKQSLASHGVEFTWEFSDTI 95 (148)
T ss_pred cceEEEEEEecCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEECCCc
Confidence 3466677777653 22333333333444433335799999988765
No 75
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=20.48 E-value=1.9e+02 Score=26.98 Aligned_cols=41 Identities=10% Similarity=0.211 Sum_probs=30.9
Q ss_pred HCCeEEEEEEeccCCCHHHHHHHHHHHHHHhCCceeEEEeeeC
Q 040346 188 LIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCGAAQVKIRNLIQ 230 (237)
Q Consensus 188 ~~gi~~a~V~SA~~Lseeq~~kI~~~L~kk~g~k~V~L~~~VD 230 (237)
.++...+.+..|.+|+.|....|+..++++.+. +.+.-..|
T Consensus 125 qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~--~RlIl~cn 165 (351)
T KOG2035|consen 125 QRPFKVVVINEADELTRDAQHALRRTMEKYSSN--CRLILVCN 165 (351)
T ss_pred ccceEEEEEechHhhhHHHHHHHHHHHHHHhcC--ceEEEEec
Confidence 345566667789999999999999999999874 44443333
No 76
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=20.19 E-value=8.4e+02 Score=25.94 Aligned_cols=115 Identities=14% Similarity=0.132 Sum_probs=77.7
Q ss_pred hhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc-----cHHHHHHhcCCCCCH---HH-HHHHHHHHhcCCCCCHHHHHH
Q 040346 91 ASGYAAALLDKALCHSSLEAVQRDVLKLSRLLK-----NEQIQAVCADPFVGD---KD-KGQIVKELLSSWKVNSYLAAL 161 (237)
Q Consensus 91 A~rYAkALfe~A~e~~~le~v~~eL~~l~~ll~-----~~~l~~~L~nP~i~~---e~-K~~lL~~l~~~~~~s~~~~nF 161 (237)
+-+|-.+|+..|..++ -......|..+.++|= +++|+-|..-|.... .. ++-++--.|+. .+-.....|
T Consensus 228 ~lk~lEtLls~c~KKs-k~~a~~~l~~LkdlfI~~LLPdRKLk~f~qrp~~~l~~~~~~~k~Ll~WyfE~-~LK~ly~rf 305 (988)
T KOG2038|consen 228 NLKSLETLLSSCKKKS-KRDALQALPALKDLFINGLLPDRKLKYFSQRPLLELTNKRLRDKILLMWYFEH-ELKILYFRF 305 (988)
T ss_pred HHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHhccCcchhhHHHhhChhhhccccccccceehHHHHHH-HHHHHHHHH
Confidence 4689999999998885 4566677888888761 677888887777732 21 22333334443 234455677
Q ss_pred HHHHHHcCccchHHHHHHHHHHHHHHHCCeEEEEEEeccCCCHHHHHHHHHHHHHHhC
Q 040346 162 LRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCG 219 (237)
Q Consensus 162 L~lLie~~Rl~lL~~I~~~f~~l~~~~~gi~~a~V~SA~~Lseeq~~kI~~~L~kk~g 219 (237)
+.+|.+--.-.++.-+.+....+++-..+. +||...|...|-.++|
T Consensus 306 ievLe~lS~D~L~~vk~raL~ti~~lL~~k------------PEqE~~LL~~lVNKlG 351 (988)
T KOG2038|consen 306 IEVLEELSKDPLEEVKKRALKTIYDLLTNK------------PEQENNLLVLLVNKLG 351 (988)
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHhCC------------cHHHHHHHHHHHHhcC
Confidence 777777666566666666666677666653 6888888888888888
No 77
>PF03937 Sdh5: Flavinator of succinate dehydrogenase; InterPro: IPR005631 This entry represents a group of uncharacterised small proteins found in both eukaryotes and prokaryotes, including NMA1147 from Neisseria meningitidis [] and YgfY from Escherichia coli []. YgfY may be involved in transcriptional regulation. The structure of these proteins consists of a complex bundle of five alpha-helices, which is composed of an up-down 3-helix bundle plus an orthogonal 2-helix bundle. ; PDB: 2LM4_A 1PUZ_A 2JR5_A 1X6I_A 1X6J_A.
Probab=20.15 E-value=2.3e+02 Score=20.20 Aligned_cols=52 Identities=13% Similarity=0.151 Sum_probs=35.5
Q ss_pred chhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc--cHHHHHHhcCCCCCHHHHH-HHHHH
Q 040346 88 QKPASGYAAALLDKALCHSSLEAVQRDVLKLSRLLK--NEQIQAVCADPFVGDKDKG-QIVKE 147 (237)
Q Consensus 88 ~~iA~rYAkALfe~A~e~~~le~v~~eL~~l~~ll~--~~~l~~~L~nP~i~~e~K~-~lL~~ 147 (237)
..+-++|+.+-++... .+++..+..++. |+++-..+.....+.+... ++++.
T Consensus 18 DllL~~f~~~~~~~l~--------~~el~~fe~lL~~~D~dL~~wl~g~~~p~~~~~~~li~~ 72 (74)
T PF03937_consen 18 DLLLGRFADAHLDSLS--------EEELDAFERLLDLEDPDLYDWLMGREEPEDPELAALIEK 72 (74)
T ss_dssp HHHHHHHHHHHHHHS---------HHHHHHHHHHHTS-HHHHHHHHCTSSEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCC--------HHHHHHHHHHHcCCCHHHHHHHhCCCCCCChhHHHHHHH
Confidence 4456788888875543 356788888887 7999998887766655544 44443
No 78
>PRK11593 folB bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase; Provisional
Probab=20.02 E-value=4.1e+02 Score=20.37 Aligned_cols=46 Identities=20% Similarity=0.186 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHCCeEEEEEEeccC
Q 040346 156 SYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKK 201 (237)
Q Consensus 156 ~~~~nFL~lLie~~Rl~lL~~I~~~f~~l~~~~~gi~~a~V~SA~~ 201 (237)
..+.+.+.-+++++++.+++.+++...+.+...-+...++|....|
T Consensus 54 ~~v~~~I~~~~~~~~~~LlE~la~~ia~~i~~~~~~~~v~v~v~Kp 99 (119)
T PRK11593 54 ADIAETVISHVEGARFALVERVAEEVAELLLARFNSPWVRIKLSKP 99 (119)
T ss_pred HHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhhCCCcEEEEEEECC
Confidence 3566777788899999999999999877776666667777766554
No 79
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.01 E-value=3.3e+02 Score=26.75 Aligned_cols=43 Identities=7% Similarity=0.180 Sum_probs=34.2
Q ss_pred HCCeEEEEEEeccC--CCHHHHHHHHHHHHHHhCCceeEEEeeeCC
Q 040346 188 LIGTRVVFVSSAKK--MEEDQLFHIAKRVQNLCGAAQVKIRNLIQE 231 (237)
Q Consensus 188 ~~gi~~a~V~SA~~--Lseeq~~kI~~~L~kk~g~k~V~L~~~VDp 231 (237)
..+.+.-.|..... +++..+++|++.|++.+| +.++|+..++.
T Consensus 411 ~~~~i~L~L~~~~~~L~~~~~~~~L~~ALs~~~G-~~i~L~I~~g~ 455 (509)
T PRK14958 411 TDNRLYLMLNPKQKPLLQQKHIERISEALSEHFN-RTITVKIDISN 455 (509)
T ss_pred cCCEEEEEEChhhhhhcCHHHHHHHHHHHHHHhC-CCeEEEEEeCC
Confidence 45566666666553 478889999999999999 89999988874
Done!