Query 040346
Match_columns 237
No_of_seqs 209 out of 1139
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 11:58:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040346.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040346hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wss_S ATP synthase subunit O, 100.0 6E-36 2.1E-40 253.5 -2.6 156 80-235 4-160 (190)
2 1abv_A Delta subunit of the F1 100.0 1.3E-30 4.5E-35 208.1 13.6 130 87-219 3-133 (134)
3 3tuf_A Stage III sporulation p 75.2 1.2 4E-05 37.4 1.8 91 124-227 100-193 (197)
4 4fjo_A DNA repair protein REV1 52.3 35 0.0012 24.8 6.0 61 157-225 35-96 (97)
5 3vu7_H DNA repair protein REV1 50.2 38 0.0013 26.0 6.1 61 157-225 62-123 (124)
6 2aya_A DNA polymerase III subu 49.0 21 0.00072 27.2 4.4 58 171-231 36-95 (128)
7 3abf_A 4-oxalocrotonate tautom 28.7 85 0.0029 19.7 4.4 26 193-218 3-28 (64)
8 1l6x_B Minimized B-domain of p 26.5 72 0.0025 19.0 3.2 26 125-150 7-32 (34)
9 1wh9_A 40S ribosomal protein S 26.2 1.3E+02 0.0044 21.6 5.3 45 190-234 35-88 (92)
10 1r4g_A RNA polymerase alpha su 25.1 1.4E+02 0.0049 19.3 5.7 39 126-165 6-44 (53)
11 4aan_A Cytochrome C551 peroxid 25.1 67 0.0023 28.7 4.3 45 167-224 278-322 (341)
12 3m20_A 4-oxalocrotonate tautom 24.3 1E+02 0.0035 19.7 4.1 24 194-218 3-26 (62)
13 3kxe_C Antitoxin protein PARD- 22.5 2.1E+02 0.0072 20.3 7.3 36 153-188 9-44 (88)
14 2x4k_A 4-oxalocrotonate tautom 21.8 1.4E+02 0.0048 18.3 4.4 24 194-217 6-29 (63)
15 2hc5_A ORF 99, hypothetical pr 20.9 77 0.0026 23.9 3.3 34 199-232 32-65 (117)
No 1
>2wss_S ATP synthase subunit O, mitochondrial; hydrogen ION transport, ATP synthesis, phosphoprotein, UBL conjugation, transit peptide; HET: ANP ADP; 3.20A {Bos taurus} PDB: 2bo5_A 2jmx_A
Probab=100.00 E-value=6e-36 Score=253.47 Aligned_cols=156 Identities=19% Similarity=0.296 Sum_probs=136.9
Q ss_pred CCCCCCccchhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHH
Q 040346 80 KSASPNSHQKPASGYAAALLDKALCHSSLEAVQRDVLKLSRLLKNEQIQAVCADPFVGDKDKGQIVKELLSSWKVNSYLA 159 (237)
Q Consensus 80 ~~~~p~~~~~iA~rYAkALfe~A~e~~~le~v~~eL~~l~~ll~~~~l~~~L~nP~i~~e~K~~lL~~l~~~~~~s~~~~ 159 (237)
..+||+...++|+|||+|||++|.++|.+++|+++|..+.+++++++|+.+|.||.++.++|.+++.++|++.++++.+.
T Consensus 4 ~~~~~~~~~~ia~rYA~AL~~~A~e~~~l~~v~~~L~~l~~~~~~~~l~~~l~~P~i~~~~K~~~l~~~~~~~~~~~~~~ 83 (190)
T 2wss_S 4 LVRPPVQIYGIEGRYATALYSAASKQNKLEQVEKELLRVGQILKEPKMAASLLNPYVKRSVKVKSLSDMTAKEKFSPLTS 83 (190)
T ss_dssp CCCCTTCCCSSSCTTHHHHHHHTTTTTCHHHHHHHHHHHHHHSSSTTSHHHHTCTTTTTSTTTTTTTHHHHTTTCCSSSS
T ss_pred ccCCchHhhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHCCHHHHHHHhCCCCCHHHHHHHHHHHHcccCCCHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999998645899999
Q ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHHCCeEEEEEEeccCCCHHHHHHHHHHHHHHhCC-ceeEEEeeeCCCCCC
Q 040346 160 ALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCGA-AQVKIRNLIQEGVPS 235 (237)
Q Consensus 160 nFL~lLie~~Rl~lL~~I~~~f~~l~~~~~gi~~a~V~SA~~Lseeq~~kI~~~L~kk~g~-k~V~L~~~VDpSLI~ 235 (237)
|||++|++|+|+.+|++|+++|.+++++++|++.|+|+||.||+++|+++|++.|++++|. ++|+++++|||+|||
T Consensus 84 nfl~ll~~~~R~~~l~~I~~~f~~l~~~~~~~~~a~V~sA~~Ls~~q~~~l~~~L~~~~g~~~~v~l~~~vDpsLiG 160 (190)
T 2wss_S 84 NLINLLAENGRLTNTPAVISAFSTMMSVHRGEVPCTVTTASALDETTLTELKTVLKSFLSKGQVLKLEVKIDPSIMG 160 (190)
T ss_dssp HHHHHHHHTTCGGGHHHHHHHHHHHHTTTSCCCCBCSSSCBCCCCSSSTTTTTTTTSSTTTCC--------------
T ss_pred HHHHHHHhCCcHhhHHHHHHHHHHHHHHHcCeeEEEEEECCCCCHHHHHHHHHHHHHHHCCCCeEEEEEEEChhHhC
Confidence 9999999999999999999999999999999999999999999999999999999999972 699999999999994
No 2
>1abv_A Delta subunit of the F1F0-ATP synthase; ATP synthesis, F1-ATPase, spectroscopy; NMR {Escherichia coli} SCOP: a.70.1.1 PDB: 2a7u_B
Probab=99.97 E-value=1.3e-30 Score=208.12 Aligned_cols=130 Identities=25% Similarity=0.284 Sum_probs=95.1
Q ss_pred cchhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc-cHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 040346 87 HQKPASGYAAALLDKALCHSSLEAVQRDVLKLSRLLK-NEQIQAVCADPFVGDKDKGQIVKELLSSWKVNSYLAALLRML 165 (237)
Q Consensus 87 ~~~iA~rYAkALfe~A~e~~~le~v~~eL~~l~~ll~-~~~l~~~L~nP~i~~e~K~~lL~~l~~~~~~s~~~~nFL~lL 165 (237)
...+|+|||+|||++|.++|.+++|. ++..+...+. +++|+.+|. |.++.++|.+++.++|++ ++++.+.|||++|
T Consensus 3 ~~~ia~rYA~AL~~~A~e~~~l~~~~-e~~~~~~~~~~~~~l~~~l~-P~i~~~~K~~~l~~~~~~-~~~~~~~nfl~ll 79 (134)
T 1abv_A 3 FITVARPYAKAAFDFAVEHQSVERWQ-DMLAFAAEVTKNEQMAELLS-GALAPETLAESFIAVCGE-QLDENGQNLIRVM 79 (134)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHTSHHHHHHHT-CSSCHHHHHHHHHHHHCS-CCCHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHhcCCHHHHH-HHHHHHHHHhcCHHHHHHHC-ccCCHHHHHHHHHHHHhc-cCCHHHHHHHHHH
Confidence 46899999999999999999999996 5555555555 999999999 999999999999999986 8999999999999
Q ss_pred HHcCccchHHHHHHHHHHHHHHHCCeEEEEEEeccCCCHHHHHHHHHHHHHHhC
Q 040346 166 IERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCG 219 (237)
Q Consensus 166 ie~~Rl~lL~~I~~~f~~l~~~~~gi~~a~V~SA~~Lseeq~~kI~~~L~kk~g 219 (237)
++|+|+.+|++|+++|.+++++++|++.|+|+||.||+++|+++|++.|++++|
T Consensus 80 ~~~~Rl~~l~~I~~~f~~l~~~~~~~~~a~V~SA~~Ls~~q~~~l~~~L~~~~g 133 (134)
T 1abv_A 80 AENGRLNALPDVLEQFIHLRAVSEATAEVDVISAAALSEQQLAKISAAMEKRLS 133 (134)
T ss_dssp HHTTCGGGHHHHHHHHHHHHHHHHHC----------------------------
T ss_pred HHCCcHHHHHHHHHHHHHHHHHHCCeeEEEEEecCCCCHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999998
No 3
>3tuf_A Stage III sporulation protein AH; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_A
Probab=75.19 E-value=1.2 Score=37.41 Aligned_cols=91 Identities=13% Similarity=0.117 Sum_probs=61.5
Q ss_pred cHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-cCccchHHHHHHHHHHH-HHHHCCeEEEEEEeccC
Q 040346 124 NEQIQAVCADPFVGDKDKGQIVKELLSSWKVNSYLAALLRMLIE-RNKVAMVSDVLEEFQRI-YDDLIGTRVVFVSSAKK 201 (237)
Q Consensus 124 ~~~l~~~L~nP~i~~e~K~~lL~~l~~~~~~s~~~~nFL~lLie-~~Rl~lL~~I~~~f~~l-~~~~~gi~~a~V~SA~~ 201 (237)
-..|+.++.|+.++.++|.+..+.+.+- .-...-...|.-|+. +| |.+. +....+.+.|.|- +..
T Consensus 100 ~E~L~eII~n~n~S~eeK~eA~~ql~eL-t~~~ekE~~IE~LLKAKG-----------F~DAVV~i~dd~V~VVVk-a~~ 166 (197)
T 3tuf_A 100 REELNAIVSSDDATAKEKSEAYDKMTAL-SEVEGTEKQLETLIKTQG-----------YEDALVNAEGDKINITVK-SDK 166 (197)
T ss_dssp HHHHHHHHTCTTSCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTT-----------CSCEEEECSSSEEEEEEE-CSC
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCC-----------CCceEEEecCCEEEEEEe-CCC
Confidence 4689999999999999999999888752 111222333433333 22 2222 2233456677776 589
Q ss_pred CCHHHHHHHHHHHHHHhCC-ceeEEEe
Q 040346 202 MEEDQLFHIAKRVQNLCGA-AQVKIRN 227 (237)
Q Consensus 202 Lseeq~~kI~~~L~kk~g~-k~V~L~~ 227 (237)
|++.+..+|.+.+.+.+|. .+|.+++
T Consensus 167 Ls~~eaaqI~DIV~r~tgv~~dV~Vqf 193 (197)
T 3tuf_A 167 HSKSKATAIIDLVAKEIKTMKDVAVTF 193 (197)
T ss_dssp CCHHHHHHHHHTSCHHHHTTSEEEEEE
T ss_pred CCHHHHHHHHHHHHHhhCCCCceEEEe
Confidence 9999999999999999983 5555554
No 4
>4fjo_A DNA repair protein REV1; translesion synthesis, transferase -DNA binding protein COMP transferase-DNA binding protein complex; HET: DNA; 2.72A {Mus musculus} PDB: 2lsg_A* 2lsk_A* 2lsy_A*
Probab=52.31 E-value=35 Score=24.81 Aligned_cols=61 Identities=16% Similarity=0.178 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHHCCeEEEEEEecc-CCCHHHHHHHHHHHHHHhCCceeEE
Q 040346 157 YLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAK-KMEEDQLFHIAKRVQNLCGAAQVKI 225 (237)
Q Consensus 157 ~~~nFL~lLie~~Rl~lL~~I~~~f~~l~~~~~gi~~a~V~SA~-~Lseeq~~kI~~~L~kk~g~k~V~L 225 (237)
.+..||.-|++.+++.-+..+++-+..++.+..+ ++- .-=..-++.+++.+.++|| ..+.|
T Consensus 35 ~l~~yL~~lv~~~~lek~~~vlk~l~rlv~~~~~-------~~W~~A~~~I~~~VQ~~v~~~yG-~~L~i 96 (97)
T 4fjo_A 35 QVVRYCTDLIEEKDLEKLDLVIKYMKRLMQQSVE-------SVWNMAFDFILDNVQVVLQQTYG-STLKV 96 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSC-------HHHHHHHHHHHHHHHHHHHHHHS-SEECC
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHHhcccc-------cHHHHHHHHHHHHHHHHHHHHhC-CCccc
Confidence 5667888889999999999999999999976433 100 0003566778888888999 46543
No 5
>3vu7_H DNA repair protein REV1; DNA replication, translesion DNA synthesis, damage tolerance, DNA repair, replication; HET: DNA; 2.80A {Homo sapiens} PDB: 2lsj_A*
Probab=50.21 E-value=38 Score=25.99 Aligned_cols=61 Identities=15% Similarity=0.175 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHHCCeEEEEEEecc-CCCHHHHHHHHHHHHHHhCCceeEE
Q 040346 157 YLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAK-KMEEDQLFHIAKRVQNLCGAAQVKI 225 (237)
Q Consensus 157 ~~~nFL~lLie~~Rl~lL~~I~~~f~~l~~~~~gi~~a~V~SA~-~Lseeq~~kI~~~L~kk~g~k~V~L 225 (237)
.+..||.-|++.+++.-+..+++-+..++++..+. .- .-=..-++.+++.+.++|| ..+.|
T Consensus 62 ~l~~yL~~lVeek~Lek~~~vlk~l~rlv~~~~~~-------~W~~Ay~~I~~~VQ~~m~~~yG-~~L~i 123 (124)
T 3vu7_H 62 QVVKYCTDLIEEKDLEKLDLVIKYMKRLMQQSVES-------VWNMAFDFILDNVQVVLQQTYG-STLKV 123 (124)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHSCSTT-------HHHHHHHHHHHHHHHHHHHHTS-CBCCC
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHHHHhccccc-------HHHHHHHHHHHHHHHHHHHHhC-CCccc
Confidence 45677777889999999999999999888653320 00 0003566777888888998 45543
No 6
>2aya_A DNA polymerase III subunit TAU; KH-fold, C-terminus of polymerase III TAU subunit, transferase; HET: DNA; NMR {Escherichia coli}
Probab=48.98 E-value=21 Score=27.17 Aligned_cols=58 Identities=12% Similarity=0.106 Sum_probs=40.1
Q ss_pred cchHHHHHHHHHHHHHHHCCeEEEEEEe--ccCCCHHHHHHHHHHHHHHhCCceeEEEeeeCC
Q 040346 171 VAMVSDVLEEFQRIYDDLIGTRVVFVSS--AKKMEEDQLFHIAKRVQNLCGAAQVKIRNLIQE 231 (237)
Q Consensus 171 l~lL~~I~~~f~~l~~~~~gi~~a~V~S--A~~Lseeq~~kI~~~L~kk~g~k~V~L~~~VDp 231 (237)
-++...++... .+....+.+.-.|.. .+=.++...++|.+.|+..|| +.|+|...++.
T Consensus 36 ~gl~~qLA~ns--~~~~~~~~~~L~l~~~~~hL~~~~~~~~L~~ALs~~~G-~~v~L~i~~g~ 95 (128)
T 2aya_A 36 PKLVEQVALNA--WKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKG-STVELTIVEDD 95 (128)
T ss_dssp CSHHHHHHHTE--EEEECSSEEEEEECGGGTTTCCHHHHHHHHHHHHHHHS-SCCEEEEEECC
T ss_pred cHHHHHHHHHH--hhheeCCEEEEEECHHHHHhCCHHHHHHHHHHHHHHHC-CCEEEEEEECC
Confidence 34444544443 223334555566654 445689999999999999999 79999988864
No 7
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=28.72 E-value=85 Score=19.74 Aligned_cols=26 Identities=12% Similarity=0.213 Sum_probs=19.6
Q ss_pred EEEEEeccCCCHHHHHHHHHHHHHHh
Q 040346 193 VVFVSSAKKMEEDQLFHIAKRVQNLC 218 (237)
Q Consensus 193 ~a~V~SA~~Lseeq~~kI~~~L~kk~ 218 (237)
.+.|.+....+++|+++|.+.|.+.+
T Consensus 3 ~i~i~~~~g~s~eqk~~l~~~lt~~l 28 (64)
T 3abf_A 3 VLKVTLLEGRPPEKKRELVRRLTEMA 28 (64)
T ss_dssp EEEEEEETTCCHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 35677777899999988888776543
No 8
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=26.47 E-value=72 Score=19.04 Aligned_cols=26 Identities=12% Similarity=0.304 Sum_probs=22.2
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHhc
Q 040346 125 EQIQAVCADPFVGDKDKGQIVKELLS 150 (237)
Q Consensus 125 ~~l~~~L~nP~i~~e~K~~lL~~l~~ 150 (237)
..|-++|..|.++.++|-..|..+-+
T Consensus 7 naFYevLh~~nLtEeQrn~yI~slkd 32 (34)
T 1l6x_B 7 RRFYEALHDPNLNEEQRNAKIKSIRD 32 (34)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHhHHHHHhc
Confidence 46788999999999999999988754
No 9
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=26.17 E-value=1.3e+02 Score=21.57 Aligned_cols=45 Identities=11% Similarity=0.239 Sum_probs=30.9
Q ss_pred CeEEEEEEeccC-----CCHHHHHHHHHHHHHHhC--CceeEE--EeeeCCCCC
Q 040346 190 GTRVVFVSSAKK-----MEEDQLFHIAKRVQNLCG--AAQVKI--RNLIQEGVP 234 (237)
Q Consensus 190 gi~~a~V~SA~~-----Lseeq~~kI~~~L~kk~g--~k~V~L--~~~VDpSLI 234 (237)
+.+.++|+||.| =....+++|++.|++++| .++|.+ ...-+|.+=
T Consensus 35 ~~i~I~I~tarPg~vIGkkG~~Ie~L~~~l~k~~~~~~~~v~I~I~eV~~P~ld 88 (92)
T 1wh9_A 35 TRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGSG 88 (92)
T ss_dssp SCEEEEEEESCHHHHHCGGGHHHHHHHHHHHHHHCCCTTSEEEEEEECCCSCCC
T ss_pred CeEEEEEEeCCCceEEcCCcHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCCcC
Confidence 456677788876 234568999999999996 245555 555566654
No 10
>1r4g_A RNA polymerase alpha subunit; three helix-bundle, viral protein, transferase; NMR {Sendai virus} SCOP: a.8.5.1
Probab=25.10 E-value=1.4e+02 Score=19.25 Aligned_cols=39 Identities=18% Similarity=0.290 Sum_probs=33.0
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 040346 126 QIQAVCADPFVGDKDKGQIVKELLSSWKVNSYLAALLRML 165 (237)
Q Consensus 126 ~l~~~L~nP~i~~e~K~~lL~~l~~~~~~s~~~~nFL~lL 165 (237)
.++.++.|..++..+|...+.++-. |+-++++.+...+.
T Consensus 6 SL~~vI~nS~LS~~~K~sYi~~L~~-CktdqEV~~~Memf 44 (53)
T 1r4g_A 6 SLRLVIESSPLSRAEKAAYVKSLSK-CKTDQEVKAVMELV 44 (53)
T ss_dssp HHHHHHTTSCCCSHHHHHHHHHHHT-CCSSHHHHHHHHHH
T ss_pred hHhhhhcCCcccHHHHHHHHHHHHH-ccchHHHHHHHHHH
Confidence 5677888999999999999998876 58899999887654
No 11
>4aan_A Cytochrome C551 peroxidase; oxidoreductase, multiheme cytochromes, conformational rearra; HET: HEC; 1.22A {Geobacter sulfurreducens} PDB: 4aam_A* 4aal_A* 4aao_A*
Probab=25.10 E-value=67 Score=28.69 Aligned_cols=45 Identities=20% Similarity=0.221 Sum_probs=36.1
Q ss_pred HcCccchHHHHHHHHHHHHHHHCCeEEEEEEeccCCCHHHHHHHHHHHHHHhCCceeE
Q 040346 167 ERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCGAAQVK 224 (237)
Q Consensus 167 e~~Rl~lL~~I~~~f~~l~~~~~gi~~a~V~SA~~Lseeq~~kI~~~L~kk~g~k~V~ 224 (237)
.+|++.-|.++++.|...- . ...|+++|++.|.+-|+..+| ....
T Consensus 278 HdG~~~tLeevv~~y~~~~---~---------~~~Lt~~E~~~LvAFL~tLtd-~~p~ 322 (341)
T 4aan_A 278 HSGKVWKLKDAVKIMGSAQ---L---------GISITDADADKIVTFLNTLTG-AQPK 322 (341)
T ss_dssp TTCCBCCHHHHHHHHHHHH---H---------SCCCCHHHHHHHHHHHHTTCC-CCCC
T ss_pred cCCCcCCHHHHHHHHhccC---c---------CCCCCHHHHHHHHHHHHccCC-CCCC
Confidence 4889999999998886432 1 357999999999999999998 4443
No 12
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=24.33 E-value=1e+02 Score=19.71 Aligned_cols=24 Identities=13% Similarity=0.274 Sum_probs=18.6
Q ss_pred EEEEeccCCCHHHHHHHHHHHHHHh
Q 040346 194 VFVSSAKKMEEDQLFHIAKRVQNLC 218 (237)
Q Consensus 194 a~V~SA~~Lseeq~~kI~~~L~kk~ 218 (237)
++|.. ...+++|+++|.+.|.+.+
T Consensus 3 I~I~~-~grt~eqK~~L~~~it~~~ 26 (62)
T 3m20_A 3 LIVYG-PKLDVGKKREFVERLTSVA 26 (62)
T ss_dssp EEEEC-SCCCHHHHHHHHHHHHHHH
T ss_pred EEEEE-CCCCHHHHHHHHHHHHHHH
Confidence 45666 7899999999988876543
No 13
>3kxe_C Antitoxin protein PARD-1; complex, TA system, protein binding; 2.60A {Caulobacter crescentus NA1000}
Probab=22.50 E-value=2.1e+02 Score=20.28 Aligned_cols=36 Identities=11% Similarity=0.216 Sum_probs=25.7
Q ss_pred CCCHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHH
Q 040346 153 KVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDL 188 (237)
Q Consensus 153 ~~s~~~~nFL~lLie~~Rl~lL~~I~~~f~~l~~~~ 188 (237)
.+++.+..|+.-+++.||..--.+++.+-.++..+.
T Consensus 9 sL~~~l~~~i~~~V~sG~Y~s~SEviR~~lR~l~~r 44 (88)
T 3kxe_C 9 VLGDHFQAFIDSQVADGRYGSASEVIRAGLRLLEEN 44 (88)
T ss_dssp CCCHHHHHHHHHHHTTTSCSSHHHHHHHHHHHHHHH
T ss_pred ecCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 466777777777777777777777777766666554
No 14
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=21.83 E-value=1.4e+02 Score=18.31 Aligned_cols=24 Identities=21% Similarity=0.237 Sum_probs=18.2
Q ss_pred EEEEeccCCCHHHHHHHHHHHHHH
Q 040346 194 VFVSSAKKMEEDQLFHIAKRVQNL 217 (237)
Q Consensus 194 a~V~SA~~Lseeq~~kI~~~L~kk 217 (237)
++|.+....+++|+++|.+.|.+.
T Consensus 6 i~i~~~~g~s~e~k~~l~~~l~~~ 29 (63)
T 2x4k_A 6 VNVKLLEGRSDEQLKNLVSEVTDA 29 (63)
T ss_dssp EEEEEESCCCHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHH
Confidence 566666778999998888877653
No 15
>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} SCOP: d.352.1.1
Probab=20.89 E-value=77 Score=23.94 Aligned_cols=34 Identities=12% Similarity=0.238 Sum_probs=28.1
Q ss_pred ccCCCHHHHHHHHHHHHHHhCCceeEEEeeeCCC
Q 040346 199 AKKMEEDQLFHIAKRVQNLCGAAQVKIRNLIQEG 232 (237)
Q Consensus 199 A~~Lseeq~~kI~~~L~kk~g~k~V~L~~~VDpS 232 (237)
..+++.+++++..+.|.+.+......|++.||+.
T Consensus 32 ~~~~~~eel~~av~~lN~~~~~~n~~L~F~vdee 65 (117)
T 2hc5_A 32 VHQVSYTNLAEMVGEMNKLLEPSQVHLKFELHDK 65 (117)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTTSSCCEEEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCceEEEEecC
Confidence 4578999999999999998875567888888865
Done!