Query 040354
Match_columns 172
No_of_seqs 164 out of 1272
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 07:37:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040354.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040354hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 6.3E-30 1.4E-34 226.4 19.8 169 1-171 159-370 (1153)
2 PF00931 NB-ARC: NB-ARC domain 99.9 2.6E-26 5.7E-31 176.1 9.7 137 32-169 1-174 (287)
3 KOG4658 Apoptotic ATPase [Sign 99.9 1E-24 2.2E-29 187.2 10.5 136 30-168 161-333 (889)
4 COG2256 MGS1 ATPase related to 99.5 2.1E-13 4.6E-18 106.6 9.0 110 51-163 48-174 (436)
5 PF05729 NACHT: NACHT domain 99.4 4.1E-12 8.9E-17 89.4 11.7 113 52-164 1-162 (166)
6 PRK06893 DNA replication initi 99.4 1.1E-11 2.3E-16 92.6 11.3 116 51-167 39-176 (229)
7 PRK13342 recombination factor 99.3 3.6E-11 7.8E-16 97.0 11.7 132 27-164 12-163 (413)
8 PF01637 Arch_ATPase: Archaeal 99.3 2.2E-11 4.7E-16 90.2 9.0 133 29-164 1-203 (234)
9 PF13173 AAA_14: AAA domain 99.3 3.7E-11 8E-16 81.8 9.2 107 51-157 2-127 (128)
10 PRK00411 cdc6 cell division co 99.2 1.4E-10 3E-15 93.0 12.5 141 24-165 27-220 (394)
11 PLN03025 replication factor C 99.2 2.4E-10 5.3E-15 89.3 11.9 135 27-164 13-170 (319)
12 TIGR00635 ruvB Holliday juncti 99.2 1.4E-10 3E-15 89.9 10.0 139 27-165 4-172 (305)
13 PRK09087 hypothetical protein; 99.2 7.4E-10 1.6E-14 82.5 12.5 112 51-165 44-166 (226)
14 PRK06620 hypothetical protein; 99.2 4.6E-10 9.9E-15 82.9 10.9 141 19-165 9-160 (214)
15 PF05496 RuvB_N: Holliday junc 99.2 7.3E-10 1.6E-14 81.4 11.6 147 15-165 16-192 (233)
16 PRK13341 recombination factor 99.2 4.2E-10 9.1E-15 96.0 12.0 133 27-165 28-181 (725)
17 PRK08727 hypothetical protein; 99.1 8.2E-10 1.8E-14 82.6 11.2 139 25-166 18-176 (233)
18 TIGR01242 26Sp45 26S proteasom 99.1 5.4E-10 1.2E-14 88.8 10.7 143 25-167 120-308 (364)
19 TIGR02928 orc1/cdc6 family rep 99.1 8.5E-10 1.9E-14 87.5 11.7 142 24-165 12-212 (365)
20 PRK00080 ruvB Holliday junctio 99.1 3.6E-10 7.9E-15 88.6 9.5 140 26-165 24-193 (328)
21 PF00308 Bac_DnaA: Bacterial d 99.1 5.5E-10 1.2E-14 82.8 9.9 141 24-165 6-179 (219)
22 TIGR03420 DnaA_homol_Hda DnaA 99.1 6.9E-10 1.5E-14 82.3 10.3 129 32-164 22-171 (226)
23 PRK08084 DNA replication initi 99.1 1.8E-09 3.9E-14 80.9 12.2 138 24-165 20-180 (235)
24 PRK07003 DNA polymerase III su 99.1 1.9E-09 4.1E-14 91.3 13.4 136 27-164 16-190 (830)
25 PRK14961 DNA polymerase III su 99.1 5.6E-09 1.2E-13 83.0 14.6 135 27-163 16-189 (363)
26 PRK05642 DNA replication initi 99.1 2.6E-09 5.7E-14 80.0 12.0 141 24-165 17-179 (234)
27 PRK14962 DNA polymerase III su 99.1 3.5E-09 7.7E-14 86.6 13.3 145 15-165 6-189 (472)
28 PRK14960 DNA polymerase III su 99.1 4.1E-09 8.9E-14 88.3 13.6 136 27-164 15-189 (702)
29 PRK14949 DNA polymerase III su 99.1 2.8E-09 6.1E-14 91.7 12.4 135 27-163 16-189 (944)
30 TIGR02639 ClpA ATP-dependent C 99.1 4.5E-09 9.7E-14 90.4 13.6 132 27-164 182-357 (731)
31 PRK14963 DNA polymerase III su 99.0 7.4E-09 1.6E-13 85.3 13.9 137 27-165 14-188 (504)
32 PRK12402 replication factor C 99.0 8.4E-09 1.8E-13 80.9 12.4 135 27-164 15-196 (337)
33 cd00009 AAA The AAA+ (ATPases 99.0 4.5E-09 9.7E-14 71.8 9.5 104 30-136 1-131 (151)
34 PRK14957 DNA polymerase III su 99.0 1.3E-08 2.7E-13 84.4 13.6 135 27-163 16-189 (546)
35 PRK14951 DNA polymerase III su 99.0 1.4E-08 2.9E-13 85.3 13.8 136 27-164 16-195 (618)
36 PRK06645 DNA polymerase III su 99.0 1.1E-08 2.4E-13 84.2 12.8 137 27-165 21-200 (507)
37 PHA02544 44 clamp loader, smal 99.0 1.4E-08 3.1E-13 79.1 12.7 135 26-162 20-170 (316)
38 PRK12323 DNA polymerase III su 99.0 6E-09 1.3E-13 87.2 11.0 135 27-163 16-194 (700)
39 PRK08691 DNA polymerase III su 99.0 8.8E-09 1.9E-13 86.8 12.0 135 27-163 16-189 (709)
40 PRK03992 proteasome-activating 99.0 1.3E-08 2.8E-13 81.6 12.6 141 26-166 130-316 (389)
41 PRK14956 DNA polymerase III su 99.0 1.2E-08 2.6E-13 83.0 12.2 136 27-164 18-192 (484)
42 PRK00440 rfc replication facto 99.0 1.4E-08 3.1E-13 78.9 12.3 136 27-165 17-174 (319)
43 PRK04195 replication factor C 99.0 5E-09 1.1E-13 86.2 10.0 137 26-164 13-172 (482)
44 TIGR03345 VI_ClpV1 type VI sec 99.0 1.5E-08 3.3E-13 88.2 13.2 130 27-162 187-360 (852)
45 KOG2028 ATPase related to the 99.0 1.9E-09 4.1E-14 84.1 6.7 131 27-163 138-292 (554)
46 PRK08903 DnaA regulatory inact 99.0 1.1E-08 2.4E-13 76.1 10.7 136 24-163 16-168 (227)
47 PRK07764 DNA polymerase III su 98.9 2.5E-08 5.4E-13 86.3 13.9 135 27-163 15-190 (824)
48 PRK07994 DNA polymerase III su 98.9 1.6E-08 3.4E-13 85.2 12.2 135 27-163 16-189 (647)
49 TIGR02881 spore_V_K stage V sp 98.9 2.8E-08 6E-13 75.6 12.6 138 28-165 7-191 (261)
50 PRK05564 DNA polymerase III su 98.9 2.1E-08 4.5E-13 78.2 11.6 136 27-164 4-164 (313)
51 PRK07471 DNA polymerase III su 98.9 7.3E-08 1.6E-12 76.6 14.7 140 24-165 16-213 (365)
52 PRK14955 DNA polymerase III su 98.9 2.5E-08 5.4E-13 80.2 12.2 136 27-164 16-198 (397)
53 TIGR02397 dnaX_nterm DNA polym 98.9 2.9E-08 6.2E-13 78.5 12.4 136 27-164 14-188 (355)
54 PRK14958 DNA polymerase III su 98.9 3.7E-08 7.9E-13 81.4 13.0 133 27-161 16-187 (509)
55 PRK14964 DNA polymerase III su 98.9 2.8E-08 6.2E-13 81.3 12.1 136 27-164 13-187 (491)
56 PRK14086 dnaA chromosomal repl 98.9 2.1E-08 4.5E-13 83.7 11.2 141 24-166 286-460 (617)
57 PRK14970 DNA polymerase III su 98.9 8E-08 1.7E-12 76.5 14.1 136 27-164 17-179 (367)
58 CHL00095 clpC Clp protease ATP 98.9 4.7E-08 1E-12 85.2 13.7 132 27-163 179-352 (821)
59 PRK00149 dnaA chromosomal repl 98.9 2.7E-08 5.8E-13 81.3 11.3 140 24-165 120-293 (450)
60 PRK14087 dnaA chromosomal repl 98.9 3.6E-08 7.8E-13 80.4 11.8 140 24-165 113-288 (450)
61 PRK14954 DNA polymerase III su 98.9 9.7E-08 2.1E-12 80.4 14.3 135 27-163 16-197 (620)
62 TIGR03015 pepcterm_ATPase puta 98.8 1.1E-07 2.3E-12 72.4 13.0 114 51-165 43-205 (269)
63 PRK14969 DNA polymerase III su 98.8 4.9E-08 1.1E-12 81.0 11.9 135 27-163 16-189 (527)
64 COG0593 DnaA ATPase involved i 98.8 4.1E-08 8.8E-13 78.4 10.8 139 24-165 85-257 (408)
65 PRK07940 DNA polymerase III su 98.8 1.2E-07 2.7E-12 75.9 13.6 137 27-163 5-187 (394)
66 PTZ00112 origin recognition co 98.8 3.1E-08 6.8E-13 85.1 10.6 51 24-75 752-805 (1164)
67 PRK14952 DNA polymerase III su 98.8 9.5E-08 2.1E-12 79.9 13.2 135 27-163 13-188 (584)
68 PRK06305 DNA polymerase III su 98.8 1.1E-07 2.5E-12 77.5 13.4 136 27-164 17-192 (451)
69 PRK09111 DNA polymerase III su 98.8 1.2E-07 2.7E-12 79.6 13.8 136 27-164 24-203 (598)
70 PRK05896 DNA polymerase III su 98.8 6.5E-08 1.4E-12 80.7 11.9 135 27-163 16-189 (605)
71 PF00004 AAA: ATPase family as 98.8 3.4E-08 7.4E-13 66.8 8.6 82 54-135 1-112 (132)
72 PRK14959 DNA polymerase III su 98.8 1.3E-07 2.8E-12 79.3 13.1 136 27-164 16-190 (624)
73 PRK09112 DNA polymerase III su 98.8 1.5E-07 3.3E-12 74.4 12.9 139 24-164 20-212 (351)
74 PRK14088 dnaA chromosomal repl 98.8 8.2E-08 1.8E-12 78.2 11.5 140 24-165 103-276 (440)
75 TIGR00362 DnaA chromosomal rep 98.8 7.8E-08 1.7E-12 77.5 11.3 139 25-165 109-281 (405)
76 PRK10865 protein disaggregatio 98.8 1.1E-07 2.3E-12 83.2 12.7 133 27-164 178-353 (857)
77 PRK12422 chromosomal replicati 98.8 1.1E-07 2.4E-12 77.4 11.9 141 24-165 109-284 (445)
78 TIGR03346 chaperone_ClpB ATP-d 98.8 1E-07 2.2E-12 83.4 12.3 132 27-164 173-348 (852)
79 PF13191 AAA_16: AAA ATPase do 98.8 6.5E-09 1.4E-13 74.5 3.8 51 28-78 1-51 (185)
80 TIGR00678 holB DNA polymerase 98.8 2.5E-07 5.5E-12 66.9 12.0 125 38-164 3-167 (188)
81 PRK14950 DNA polymerase III su 98.8 3.9E-07 8.5E-12 76.7 14.7 136 27-164 16-191 (585)
82 PRK08451 DNA polymerase III su 98.8 2.4E-07 5.1E-12 76.7 13.0 135 27-163 14-187 (535)
83 PRK11034 clpA ATP-dependent Cl 98.7 2.8E-07 6.1E-12 79.3 13.6 133 27-164 186-361 (758)
84 PRK06647 DNA polymerase III su 98.7 4.5E-07 9.8E-12 75.8 14.5 136 27-164 16-190 (563)
85 PRK14971 DNA polymerase III su 98.7 3.5E-07 7.6E-12 77.2 13.9 135 27-163 17-191 (614)
86 COG0466 Lon ATP-dependent Lon 98.7 3.1E-07 6.6E-12 77.1 13.0 141 25-167 321-510 (782)
87 TIGR02880 cbbX_cfxQ probable R 98.7 3.5E-07 7.6E-12 70.4 12.6 114 52-165 59-208 (284)
88 PTZ00454 26S protease regulato 98.7 2.2E-07 4.8E-12 74.6 11.8 138 27-164 145-328 (398)
89 PRK05563 DNA polymerase III su 98.7 1.1E-06 2.4E-11 73.6 15.3 137 26-164 15-190 (559)
90 PRK14965 DNA polymerase III su 98.7 5.9E-07 1.3E-11 75.5 13.4 135 27-163 16-189 (576)
91 PRK04841 transcriptional regul 98.7 4.1E-07 8.9E-12 79.9 12.9 134 24-164 11-198 (903)
92 TIGR01241 FtsH_fam ATP-depende 98.7 3.5E-07 7.7E-12 75.6 11.6 139 27-165 55-238 (495)
93 PRK14948 DNA polymerase III su 98.7 1.3E-06 2.7E-11 74.0 14.9 135 27-163 16-191 (620)
94 KOG0989 Replication factor C, 98.7 9.9E-08 2.1E-12 72.8 7.4 138 24-164 33-200 (346)
95 PRK07133 DNA polymerase III su 98.7 4.2E-07 9E-12 77.4 12.0 135 27-163 18-188 (725)
96 PTZ00361 26 proteosome regulat 98.7 1.3E-07 2.9E-12 76.6 8.5 139 27-165 183-367 (438)
97 PRK14953 DNA polymerase III su 98.6 5.2E-07 1.1E-11 74.3 11.9 136 27-164 16-190 (486)
98 CHL00181 cbbX CbbX; Provisiona 98.6 1.4E-06 2.9E-11 67.3 13.5 114 52-165 60-209 (287)
99 PRK10787 DNA-binding ATP-depen 98.6 6.4E-07 1.4E-11 77.5 12.7 164 2-165 287-506 (784)
100 CHL00176 ftsH cell division pr 98.6 4.2E-07 9E-12 77.0 11.2 139 27-165 183-366 (638)
101 TIGR02903 spore_lon_C ATP-depe 98.6 4E-07 8.7E-12 77.0 11.1 46 27-75 154-199 (615)
102 TIGR00763 lon ATP-dependent pr 98.6 9.2E-07 2E-11 76.8 13.0 136 27-164 320-504 (775)
103 COG3899 Predicted ATPase [Gene 98.6 3.7E-07 8E-12 79.7 10.5 51 28-78 1-51 (849)
104 PF13177 DNA_pol3_delta2: DNA 98.6 3.2E-06 7E-11 59.8 12.9 121 31-153 1-162 (162)
105 COG1474 CDC6 Cdc6-related prot 98.6 1.3E-06 2.7E-11 69.5 11.6 141 24-165 14-203 (366)
106 PF13401 AAA_22: AAA domain; P 98.6 2.5E-07 5.3E-12 62.7 6.5 82 51-134 4-125 (131)
107 TIGR03689 pup_AAA proteasome A 98.6 6.2E-07 1.3E-11 73.9 9.9 138 27-165 182-378 (512)
108 PRK08058 DNA polymerase III su 98.5 3.2E-06 7E-11 66.4 13.3 135 28-164 6-181 (329)
109 COG1373 Predicted ATPase (AAA+ 98.5 1.2E-06 2.6E-11 70.5 11.1 105 53-159 39-161 (398)
110 COG1222 RPT1 ATP-dependent 26S 98.5 1.7E-06 3.7E-11 67.5 11.3 136 28-164 152-334 (406)
111 PF05673 DUF815: Protein of un 98.5 1.3E-06 2.8E-11 65.2 8.9 93 24-119 24-131 (249)
112 PRK07399 DNA polymerase III su 98.5 7.2E-06 1.6E-10 64.0 13.4 135 27-165 4-195 (314)
113 KOG2004 Mitochondrial ATP-depe 98.5 8.7E-07 1.9E-11 74.5 8.5 140 25-165 409-596 (906)
114 TIGR02639 ClpA ATP-dependent C 98.5 4.3E-06 9.2E-11 72.3 13.0 138 26-163 453-660 (731)
115 PRK08116 hypothetical protein; 98.4 9.5E-07 2.1E-11 67.5 7.7 83 52-135 115-221 (268)
116 TIGR01243 CDC48 AAA family ATP 98.4 3.8E-06 8.3E-11 72.6 11.9 137 27-164 453-634 (733)
117 PRK08181 transposase; Validate 98.4 8.5E-07 1.8E-11 67.7 6.5 25 52-76 107-131 (269)
118 PTZ00202 tuzin; Provisional 98.4 1.3E-06 2.7E-11 70.5 7.5 52 24-75 259-310 (550)
119 COG2255 RuvB Holliday junction 98.4 4E-06 8.7E-11 63.7 9.7 139 27-165 26-194 (332)
120 PRK05707 DNA polymerase III su 98.4 1E-05 2.3E-10 63.5 12.3 114 51-164 22-177 (328)
121 TIGR01243 CDC48 AAA family ATP 98.4 3.7E-06 8.1E-11 72.7 10.6 138 27-164 178-358 (733)
122 TIGR02640 gas_vesic_GvpN gas v 98.4 8.8E-06 1.9E-10 62.0 11.5 123 36-164 11-197 (262)
123 COG2812 DnaX DNA polymerase II 98.3 2.8E-06 6.1E-11 69.9 8.7 135 27-163 16-189 (515)
124 PRK12377 putative replication 98.3 2.1E-06 4.5E-11 64.8 7.4 28 51-78 101-128 (248)
125 CHL00195 ycf46 Ycf46; Provisio 98.3 6.4E-06 1.4E-10 67.8 10.5 115 51-165 259-405 (489)
126 PF14532 Sigma54_activ_2: Sigm 98.3 1.5E-06 3.3E-11 59.7 5.8 101 30-134 1-109 (138)
127 KOG2543 Origin recognition com 98.3 9.9E-06 2.1E-10 63.8 10.7 51 25-75 4-54 (438)
128 COG1618 Predicted nucleotide k 98.3 2.5E-06 5.4E-11 59.6 6.7 28 51-78 5-32 (179)
129 KOG0991 Replication factor C, 98.3 2E-06 4.3E-11 63.7 6.5 102 27-131 27-149 (333)
130 COG0542 clpA ATP-binding subun 98.3 6.9E-06 1.5E-10 70.3 10.5 132 27-163 170-344 (786)
131 TIGR02902 spore_lonB ATP-depen 98.3 1.2E-05 2.6E-10 67.1 11.8 45 27-74 65-109 (531)
132 PRK06526 transposase; Provisio 98.3 2.8E-06 6.1E-11 64.4 7.2 26 51-76 98-123 (254)
133 PRK10536 hypothetical protein; 98.3 7.1E-06 1.5E-10 61.9 9.2 43 27-74 55-97 (262)
134 cd01131 PilT Pilus retraction 98.3 1E-05 2.2E-10 59.1 9.9 86 52-140 2-114 (198)
135 smart00763 AAA_PrkA PrkA AAA d 98.3 1.5E-06 3.3E-11 68.4 5.0 54 24-77 48-104 (361)
136 PRK09183 transposase/IS protei 98.2 3.4E-06 7.4E-11 64.1 6.6 23 52-74 103-125 (259)
137 KOG0741 AAA+-type ATPase [Post 98.2 2.3E-05 5E-10 64.2 11.5 112 51-164 538-685 (744)
138 smart00382 AAA ATPases associa 98.2 6.1E-06 1.3E-10 55.5 7.2 27 52-78 3-29 (148)
139 PRK06871 DNA polymerase III su 98.2 0.0001 2.2E-09 57.8 14.8 129 34-164 9-178 (325)
140 TIGR03345 VI_ClpV1 type VI sec 98.2 1.4E-05 3E-10 70.1 10.9 108 26-133 565-717 (852)
141 COG2884 FtsE Predicted ATPase 98.2 1.3E-05 2.8E-10 57.7 8.8 55 88-142 146-204 (223)
142 COG0470 HolB ATPase involved i 98.2 1.8E-05 3.8E-10 61.6 10.5 130 28-158 2-174 (325)
143 PRK08769 DNA polymerase III su 98.2 7.6E-05 1.6E-09 58.4 13.7 129 34-164 11-184 (319)
144 KOG0733 Nuclear AAA ATPase (VC 98.2 1.6E-05 3.4E-10 66.2 10.2 116 51-166 545-693 (802)
145 KOG0734 AAA+-type ATPase conta 98.2 6.9E-06 1.5E-10 67.3 8.0 97 28-124 305-436 (752)
146 KOG2227 Pre-initiation complex 98.2 2.2E-05 4.8E-10 63.3 10.6 153 9-164 135-337 (529)
147 PRK07952 DNA replication prote 98.2 1.3E-05 2.8E-10 60.4 8.9 41 36-77 85-125 (244)
148 TIGR03346 chaperone_ClpB ATP-d 98.2 4.8E-05 1E-09 66.9 13.7 50 26-75 564-619 (852)
149 KOG0744 AAA+-type ATPase [Post 98.2 3E-05 6.5E-10 60.1 10.4 114 51-164 177-339 (423)
150 PRK08939 primosomal protein Dn 98.2 7.1E-06 1.5E-10 63.8 7.1 103 31-134 135-260 (306)
151 PRK06090 DNA polymerase III su 98.2 0.00018 3.8E-09 56.3 14.8 129 34-164 10-179 (319)
152 PLN00020 ribulose bisphosphate 98.2 4.1E-06 8.9E-11 66.2 5.5 57 51-107 148-222 (413)
153 TIGR00602 rad24 checkpoint pro 98.1 7E-05 1.5E-09 63.5 13.0 51 24-74 81-133 (637)
154 KOG0730 AAA+-type ATPase [Post 98.1 1.5E-05 3.2E-10 66.6 8.8 116 51-166 468-616 (693)
155 KOG1514 Origin recognition com 98.1 1.6E-05 3.5E-10 66.8 8.9 107 25-132 394-546 (767)
156 PRK10865 protein disaggregatio 98.1 7.3E-05 1.6E-09 65.7 13.3 50 26-75 567-622 (857)
157 PRK07993 DNA polymerase III su 98.1 0.00016 3.4E-09 57.1 13.9 130 33-164 8-179 (334)
158 PRK06696 uridine kinase; Valid 98.1 4.3E-06 9.4E-11 62.1 4.9 46 31-76 2-47 (223)
159 COG2607 Predicted ATPase (AAA+ 98.1 2.9E-05 6.4E-10 57.8 9.1 106 27-134 60-182 (287)
160 PRK06921 hypothetical protein; 98.1 6.7E-06 1.4E-10 62.8 5.9 27 51-77 117-143 (266)
161 PRK11034 clpA ATP-dependent Cl 98.1 1.8E-05 3.9E-10 68.4 9.1 95 26-120 457-582 (758)
162 KOG0733 Nuclear AAA ATPase (VC 98.1 5.6E-06 1.2E-10 68.7 5.7 81 27-107 190-292 (802)
163 PF01695 IstB_IS21: IstB-like 98.1 4E-06 8.7E-11 60.2 4.4 25 51-75 47-71 (178)
164 COG2909 MalT ATP-dependent tra 98.1 2.6E-05 5.7E-10 66.9 9.8 130 26-164 18-206 (894)
165 PF13207 AAA_17: AAA domain; P 98.1 3.1E-06 6.8E-11 56.5 3.4 23 53-75 1-23 (121)
166 PRK11331 5-methylcytosine-spec 98.1 1.3E-05 2.9E-10 64.9 7.4 45 27-76 175-219 (459)
167 PRK06964 DNA polymerase III su 98.1 0.00025 5.4E-09 56.0 14.4 114 51-164 21-203 (342)
168 PHA00729 NTP-binding motif con 98.1 1.6E-05 3.5E-10 59.0 7.3 26 51-76 17-42 (226)
169 PRK10733 hflB ATP-dependent me 98.1 2.4E-05 5.1E-10 66.8 9.3 114 52-165 186-335 (644)
170 COG1223 Predicted ATPase (AAA+ 98.1 2.9E-05 6.2E-10 58.6 8.5 139 27-165 121-297 (368)
171 COG1484 DnaC DNA replication p 98.1 1.5E-05 3.3E-10 60.4 7.0 27 51-77 105-131 (254)
172 PF03266 NTPase_1: NTPase; In 98.1 1.1E-05 2.3E-10 57.5 5.7 24 54-77 2-25 (168)
173 CHL00095 clpC Clp protease ATP 98.0 4.4E-05 9.5E-10 66.9 10.4 96 26-121 508-637 (821)
174 cd03228 ABCC_MRP_Like The MRP 98.0 5.8E-05 1.3E-09 53.7 9.3 96 52-149 29-167 (171)
175 TIGR01817 nifA Nif-specific re 98.0 0.00017 3.6E-09 60.4 13.3 50 24-74 193-242 (534)
176 PF07728 AAA_5: AAA domain (dy 98.0 6.1E-06 1.3E-10 56.6 3.9 26 54-79 2-27 (139)
177 COG0464 SpoVK ATPases of the A 98.0 6.3E-05 1.4E-09 62.3 10.6 116 51-166 276-424 (494)
178 PRK06835 DNA replication prote 98.0 2.7E-05 5.9E-10 61.1 8.0 25 52-76 184-208 (329)
179 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.0 5.9E-05 1.3E-09 52.2 8.6 95 52-149 27-140 (144)
180 COG0542 clpA ATP-binding subun 98.0 4.7E-05 1E-09 65.4 9.5 97 26-122 490-620 (786)
181 cd03222 ABC_RNaseL_inhibitor T 98.0 6E-05 1.3E-09 54.1 8.8 89 52-140 26-137 (177)
182 PF04665 Pox_A32: Poxvirus A32 98.0 4.7E-05 1E-09 57.1 8.3 31 52-82 14-44 (241)
183 PRK08699 DNA polymerase III su 98.0 0.00019 4E-09 56.4 11.8 114 51-164 21-184 (325)
184 PHA02244 ATPase-like protein 98.0 3.5E-05 7.7E-10 61.0 7.7 104 25-134 94-230 (383)
185 PF02562 PhoH: PhoH-like prote 98.0 2E-05 4.3E-10 57.7 5.6 38 32-74 5-42 (205)
186 TIGR01420 pilT_fam pilus retra 97.9 9.1E-05 2E-09 58.6 9.6 85 51-138 122-233 (343)
187 PF00910 RNA_helicase: RNA hel 97.9 1.5E-05 3.3E-10 52.4 4.4 53 54-107 1-59 (107)
188 cd03216 ABC_Carb_Monos_I This 97.9 7.1E-05 1.5E-09 52.9 8.1 97 52-149 27-155 (163)
189 PF07693 KAP_NTPase: KAP famil 97.9 0.00026 5.6E-09 55.3 12.0 46 33-78 2-47 (325)
190 PF13604 AAA_30: AAA domain; P 97.9 0.00014 3E-09 53.0 9.8 83 52-136 19-132 (196)
191 KOG0735 AAA+-type ATPase [Post 97.9 6.4E-05 1.4E-09 63.6 8.6 57 51-107 431-504 (952)
192 cd03246 ABCC_Protease_Secretio 97.9 9E-05 2E-09 52.8 8.4 96 52-149 29-168 (173)
193 cd03247 ABCC_cytochrome_bd The 97.9 0.00013 2.8E-09 52.2 9.2 96 52-149 29-169 (178)
194 COG1121 ZnuC ABC-type Mn/Zn tr 97.9 8.7E-05 1.9E-09 55.9 8.5 51 88-140 148-204 (254)
195 cd03214 ABC_Iron-Siderophores_ 97.9 7.6E-05 1.6E-09 53.6 7.9 97 52-149 26-171 (180)
196 cd01128 rho_factor Transcripti 97.9 1.8E-05 3.9E-10 59.8 4.6 26 52-77 17-42 (249)
197 TIGR02858 spore_III_AA stage I 97.9 0.0002 4.4E-09 54.7 10.4 87 51-140 111-234 (270)
198 COG1875 NYN ribonuclease and A 97.9 9.6E-05 2.1E-09 58.2 8.6 100 31-134 228-387 (436)
199 COG0396 sufC Cysteine desulfur 97.9 0.00013 2.8E-09 54.0 8.4 52 96-147 161-216 (251)
200 cd01129 PulE-GspE PulE/GspE Th 97.9 0.00026 5.5E-09 54.1 10.4 82 52-136 81-185 (264)
201 KOG2228 Origin recognition com 97.9 0.00043 9.4E-09 54.0 11.5 137 27-164 24-218 (408)
202 PRK13695 putative NTPase; Prov 97.8 0.00036 7.9E-09 49.7 10.5 23 53-75 2-24 (174)
203 PRK07667 uridine kinase; Provi 97.8 3.7E-05 8.1E-10 55.9 5.4 40 36-76 3-42 (193)
204 KOG1969 DNA replication checkp 97.8 2.6E-05 5.5E-10 66.0 4.9 57 51-109 326-399 (877)
205 PRK08118 topology modulation p 97.8 1.7E-05 3.6E-10 56.4 3.3 25 52-76 2-26 (167)
206 PF13671 AAA_33: AAA domain; P 97.8 3.9E-05 8.4E-10 52.6 5.1 22 53-74 1-22 (143)
207 PRK15455 PrkA family serine pr 97.8 2.6E-05 5.7E-10 64.9 4.8 49 28-77 77-129 (644)
208 cd03238 ABC_UvrA The excision 97.8 0.00024 5.1E-09 51.0 9.2 96 52-149 22-161 (176)
209 TIGR02974 phageshock_pspF psp 97.8 0.00012 2.7E-09 57.5 8.4 45 29-74 1-45 (329)
210 KOG0728 26S proteasome regulat 97.8 0.00037 8E-09 52.5 10.2 134 29-162 148-328 (404)
211 PRK09376 rho transcription ter 97.8 3.5E-05 7.6E-10 61.5 5.1 31 52-82 170-201 (416)
212 PRK11608 pspF phage shock prot 97.8 0.00013 2.9E-09 57.3 8.3 47 27-74 6-52 (326)
213 PRK05342 clpX ATP-dependent pr 97.8 7.6E-05 1.7E-09 60.4 7.0 55 26-80 70-137 (412)
214 KOG0731 AAA+-type ATPase conta 97.8 0.00032 6.9E-09 60.2 10.9 139 27-165 311-495 (774)
215 COG1136 SalX ABC-type antimicr 97.8 0.0002 4.3E-09 53.2 8.5 59 90-150 153-216 (226)
216 PF13238 AAA_18: AAA domain; P 97.8 2.1E-05 4.5E-10 52.7 3.2 22 54-75 1-22 (129)
217 PRK04296 thymidine kinase; Pro 97.8 0.00025 5.5E-09 51.4 8.9 83 52-136 3-117 (190)
218 cd01120 RecA-like_NTPases RecA 97.8 0.00015 3.3E-09 50.3 7.5 23 53-75 1-23 (165)
219 COG1124 DppF ABC-type dipeptid 97.8 0.00014 3.1E-09 54.1 7.5 23 52-74 34-56 (252)
220 COG0488 Uup ATPase components 97.8 0.00024 5.2E-09 59.2 9.7 57 92-151 452-511 (530)
221 KOG0736 Peroxisome assembly fa 97.8 0.00072 1.6E-08 57.9 12.4 130 28-158 673-849 (953)
222 cd03237 ABC_RNaseL_inhibitor_d 97.8 0.00018 3.8E-09 54.4 8.2 23 52-74 26-48 (246)
223 cd00561 CobA_CobO_BtuR ATP:cor 97.8 0.00016 3.4E-09 51.0 7.3 85 52-136 3-139 (159)
224 cd00267 ABC_ATPase ABC (ATP-bi 97.8 0.0002 4.4E-09 50.1 8.0 97 52-149 26-153 (157)
225 cd03263 ABC_subfamily_A The AB 97.8 0.00018 3.8E-09 53.2 8.0 23 52-74 29-51 (220)
226 PF00437 T2SE: Type II/IV secr 97.8 0.00013 2.8E-09 55.7 7.4 99 35-138 112-235 (270)
227 KOG0739 AAA+-type ATPase [Post 97.7 5.4E-05 1.2E-09 58.2 5.0 81 27-108 133-236 (439)
228 cd01130 VirB11-like_ATPase Typ 97.7 0.00018 3.9E-09 51.9 7.6 80 52-135 26-135 (186)
229 PF00485 PRK: Phosphoribulokin 97.7 3.4E-05 7.3E-10 56.1 3.8 24 53-76 1-24 (194)
230 cd03230 ABC_DR_subfamily_A Thi 97.7 0.00017 3.7E-09 51.4 7.3 97 52-149 27-168 (173)
231 PF05621 TniB: Bacterial TniB 97.7 0.00013 2.8E-09 56.3 7.0 51 25-75 32-85 (302)
232 COG0465 HflB ATP-dependent Zn 97.7 0.00034 7.5E-09 58.6 10.0 81 27-107 150-252 (596)
233 cd03223 ABCD_peroxisomal_ALDP 97.7 0.00046 1E-08 48.9 9.4 94 52-149 28-160 (166)
234 PRK07261 topology modulation p 97.7 2.9E-05 6.4E-10 55.4 3.2 55 53-109 2-69 (171)
235 COG1120 FepC ABC-type cobalami 97.7 0.00023 4.9E-09 53.9 8.0 23 52-74 29-51 (258)
236 COG4088 Predicted nucleotide k 97.7 0.00068 1.5E-08 49.6 10.0 27 52-78 2-28 (261)
237 TIGR00960 3a0501s02 Type II (G 97.7 0.00024 5.2E-09 52.4 8.1 23 52-74 30-52 (216)
238 smart00534 MUTSac ATPase domai 97.7 0.0002 4.2E-09 51.7 7.4 88 53-141 1-128 (185)
239 PRK11889 flhF flagellar biosyn 97.7 0.0013 2.7E-08 52.9 12.3 25 51-75 241-265 (436)
240 cd03259 ABC_Carb_Solutes_like 97.7 0.0002 4.2E-09 52.7 7.3 23 52-74 27-49 (213)
241 KOG0927 Predicted transporter 97.7 0.00019 4.1E-09 59.0 7.7 32 51-82 101-135 (614)
242 KOG0738 AAA+-type ATPase [Post 97.7 0.00011 2.4E-09 58.2 6.2 82 27-109 212-316 (491)
243 PRK13539 cytochrome c biogenes 97.7 0.00021 4.5E-09 52.4 7.4 23 52-74 29-51 (207)
244 PF03969 AFG1_ATPase: AFG1-lik 97.7 9.2E-05 2E-09 58.9 5.9 81 51-134 62-166 (362)
245 COG1126 GlnQ ABC-type polar am 97.7 0.00037 8.1E-09 51.2 8.5 55 87-141 144-202 (240)
246 KOG0729 26S proteasome regulat 97.7 0.00022 4.7E-09 54.2 7.5 57 51-107 211-280 (435)
247 KOG2170 ATPase of the AAA+ sup 97.7 0.00056 1.2E-08 52.6 9.6 93 28-120 83-203 (344)
248 COG1224 TIP49 DNA helicase TIP 97.7 0.0014 2.9E-08 51.8 11.9 52 26-78 38-92 (450)
249 PTZ00301 uridine kinase; Provi 97.7 5E-05 1.1E-09 56.0 3.8 25 51-75 3-27 (210)
250 PRK13531 regulatory ATPase Rav 97.7 5.7E-05 1.2E-09 61.9 4.4 45 26-75 19-63 (498)
251 cd03243 ABC_MutS_homologs The 97.7 0.00033 7.1E-09 51.2 8.1 88 52-141 30-157 (202)
252 PRK06762 hypothetical protein; 97.7 4.9E-05 1.1E-09 53.7 3.6 25 51-75 2-26 (166)
253 PRK10820 DNA-binding transcrip 97.7 0.00094 2E-08 55.8 11.6 49 25-74 202-250 (520)
254 cd03240 ABC_Rad50 The catalyti 97.7 0.00074 1.6E-08 49.5 9.8 57 92-150 134-196 (204)
255 PF01583 APS_kinase: Adenylyls 97.7 0.00011 2.5E-09 51.4 5.2 27 51-77 2-28 (156)
256 PRK08233 hypothetical protein; 97.7 5E-05 1.1E-09 54.2 3.6 25 51-75 3-27 (182)
257 cd03283 ABC_MutS-like MutS-lik 97.7 0.0004 8.6E-09 50.8 8.3 88 52-141 26-154 (199)
258 COG2274 SunT ABC-type bacterio 97.7 0.00031 6.8E-09 60.4 8.9 23 52-74 500-522 (709)
259 cd03253 ABCC_ATM1_transporter 97.7 0.00061 1.3E-08 50.9 9.5 23 52-74 28-50 (236)
260 KOG0735 AAA+-type ATPase [Post 97.6 0.00041 9E-09 58.9 9.2 137 28-164 668-847 (952)
261 PRK04132 replication factor C 97.6 0.0007 1.5E-08 59.2 10.9 108 56-163 569-700 (846)
262 cd03251 ABCC_MsbA MsbA is an e 97.6 0.00068 1.5E-08 50.5 9.7 23 52-74 29-51 (234)
263 PF10443 RNA12: RNA12 protein; 97.6 0.00062 1.4E-08 54.8 9.8 40 32-74 1-41 (431)
264 cd03264 ABC_drug_resistance_li 97.6 0.00037 8.1E-09 51.1 8.0 22 53-74 27-48 (211)
265 PF00448 SRP54: SRP54-type pro 97.6 0.0003 6.5E-09 51.3 7.3 26 51-76 1-26 (196)
266 cd02019 NK Nucleoside/nucleoti 97.6 5.7E-05 1.2E-09 45.6 3.0 23 53-75 1-23 (69)
267 TIGR03522 GldA_ABC_ATP gliding 97.6 0.00046 9.9E-09 53.6 8.7 23 52-74 29-51 (301)
268 TIGR02788 VirB11 P-type DNA tr 97.6 0.00045 9.7E-09 53.9 8.6 85 51-139 144-257 (308)
269 cd03244 ABCC_MRP_domain2 Domai 97.6 0.00078 1.7E-08 49.7 9.6 23 52-74 31-53 (221)
270 PRK15429 formate hydrogenlyase 97.6 0.00031 6.6E-09 60.6 8.3 47 27-74 376-422 (686)
271 KOG0651 26S proteasome regulat 97.6 8.8E-05 1.9E-09 57.2 4.5 57 51-107 166-235 (388)
272 PRK03839 putative kinase; Prov 97.6 6.3E-05 1.4E-09 53.9 3.5 24 53-76 2-25 (180)
273 TIGR00767 rho transcription te 97.6 0.0001 2.3E-09 59.0 5.1 31 52-82 169-200 (415)
274 KOG0743 AAA+-type ATPase [Post 97.6 9E-05 1.9E-09 59.6 4.7 112 51-164 235-382 (457)
275 KOG0066 eIF2-interacting prote 97.6 0.0003 6.6E-09 56.9 7.6 88 51-140 613-766 (807)
276 cd03249 ABC_MTABC3_MDL1_MDL2 M 97.6 0.00075 1.6E-08 50.5 9.5 23 52-74 30-52 (238)
277 PRK13657 cyclic beta-1,2-gluca 97.6 0.00039 8.4E-09 58.8 8.7 23 52-74 362-384 (588)
278 PRK05986 cob(I)alamin adenolsy 97.6 0.00036 7.9E-09 50.5 7.3 85 51-135 22-158 (191)
279 cd03281 ABC_MSH5_euk MutS5 hom 97.6 0.00063 1.4E-08 50.3 8.7 90 52-141 30-160 (213)
280 cd03252 ABCC_Hemolysin The ABC 97.6 0.00074 1.6E-08 50.5 9.3 23 52-74 29-51 (237)
281 PF08298 AAA_PrkA: PrkA AAA do 97.6 0.00013 2.8E-09 57.4 5.2 53 25-77 59-114 (358)
282 cd03254 ABCC_Glucan_exporter_l 97.6 0.00085 1.8E-08 49.8 9.4 23 52-74 30-52 (229)
283 PRK05480 uridine/cytidine kina 97.6 7.6E-05 1.7E-09 54.8 3.7 25 51-75 6-30 (209)
284 PRK11176 lipid transporter ATP 97.6 0.00042 9.1E-09 58.5 8.6 24 52-75 370-393 (582)
285 PF00406 ADK: Adenylate kinase 97.6 0.00023 4.9E-09 49.5 5.9 85 56-140 1-119 (151)
286 TIGR03375 type_I_sec_LssB type 97.6 0.00051 1.1E-08 59.3 9.2 23 52-74 492-514 (694)
287 cd01133 F1-ATPase_beta F1 ATP 97.6 0.00021 4.5E-09 54.6 6.1 31 52-82 70-100 (274)
288 PF08433 KTI12: Chromatin asso 97.6 0.00028 6E-09 54.0 6.8 61 52-113 2-86 (270)
289 PRK13538 cytochrome c biogenes 97.6 0.00051 1.1E-08 50.2 8.0 23 52-74 28-50 (204)
290 KOG0742 AAA+-type ATPase [Post 97.6 0.0005 1.1E-08 55.2 8.2 112 51-162 384-525 (630)
291 TIGR00382 clpX endopeptidase C 97.6 0.00021 4.6E-09 57.7 6.3 57 24-80 74-145 (413)
292 PRK14974 cell division protein 97.6 0.0032 6.9E-08 49.7 12.7 26 51-76 140-165 (336)
293 TIGR01360 aden_kin_iso1 adenyl 97.6 7.7E-05 1.7E-09 53.5 3.5 24 51-74 3-26 (188)
294 cd03217 ABC_FeS_Assembly ABC-t 97.6 0.00063 1.4E-08 49.6 8.3 23 52-74 27-49 (200)
295 cd03266 ABC_NatA_sodium_export 97.6 0.00054 1.2E-08 50.5 8.1 23 52-74 32-54 (218)
296 TIGR01188 drrA daunorubicin re 97.6 0.00045 9.8E-09 53.7 7.9 23 52-74 20-42 (302)
297 PF07726 AAA_3: ATPase family 97.6 6.2E-05 1.3E-09 50.9 2.7 29 54-82 2-30 (131)
298 TIGR00150 HI0065_YjeE ATPase, 97.6 0.00013 2.9E-09 49.8 4.3 41 34-75 6-46 (133)
299 cd03369 ABCC_NFT1 Domain 2 of 97.5 0.0012 2.6E-08 48.3 9.6 23 52-74 35-57 (207)
300 PRK05022 anaerobic nitric oxid 97.5 0.00035 7.6E-09 58.2 7.5 49 25-74 185-233 (509)
301 TIGR01277 thiQ thiamine ABC tr 97.5 0.00057 1.2E-08 50.3 7.9 23 52-74 25-47 (213)
302 KOG0727 26S proteasome regulat 97.5 0.00012 2.6E-09 55.2 4.1 58 51-108 189-259 (408)
303 cd03300 ABC_PotA_N PotA is an 97.5 0.00048 1E-08 51.4 7.5 23 52-74 27-49 (232)
304 TIGR02203 MsbA_lipidA lipid A 97.5 0.00058 1.3E-08 57.5 8.8 23 52-74 359-381 (571)
305 PRK12724 flagellar biosynthesi 97.5 0.0032 6.9E-08 51.0 12.5 24 51-74 223-246 (432)
306 PRK11174 cysteine/glutathione 97.5 0.00066 1.4E-08 57.4 9.2 24 52-75 377-400 (588)
307 cd03282 ABC_MSH4_euk MutS4 hom 97.5 0.0011 2.4E-08 48.7 9.2 90 51-142 29-158 (204)
308 PRK06547 hypothetical protein; 97.5 0.00019 4.1E-09 51.3 5.0 25 51-75 15-39 (172)
309 TIGR03740 galliderm_ABC gallid 97.5 0.00051 1.1E-08 50.9 7.5 23 52-74 27-49 (223)
310 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 97.5 0.00063 1.4E-08 50.5 8.0 23 52-74 49-71 (224)
311 TIGR00235 udk uridine kinase. 97.5 0.0001 2.2E-09 54.1 3.7 26 51-76 6-31 (207)
312 TIGR02524 dot_icm_DotB Dot/Icm 97.5 0.0015 3.2E-08 52.0 10.5 81 51-134 134-246 (358)
313 COG4618 ArpD ABC-type protease 97.5 0.00056 1.2E-08 56.0 8.1 23 52-74 363-385 (580)
314 PRK00131 aroK shikimate kinase 97.5 9.9E-05 2.1E-09 52.2 3.5 26 51-76 4-29 (175)
315 PHA02774 E1; Provisional 97.5 0.00039 8.4E-09 58.1 7.4 69 36-107 421-489 (613)
316 cd00227 CPT Chloramphenicol (C 97.5 0.00011 2.3E-09 52.6 3.6 24 52-75 3-26 (175)
317 PRK09544 znuC high-affinity zi 97.5 0.00063 1.4E-08 51.5 7.9 23 52-74 31-53 (251)
318 PRK13537 nodulation ABC transp 97.5 0.0006 1.3E-08 53.1 7.8 23 52-74 34-56 (306)
319 PRK09270 nucleoside triphospha 97.5 0.00025 5.4E-09 52.9 5.4 26 51-76 33-58 (229)
320 PF00158 Sigma54_activat: Sigm 97.5 0.00011 2.3E-09 52.4 3.3 45 29-74 1-45 (168)
321 PRK13647 cbiO cobalt transport 97.5 0.00065 1.4E-08 52.1 7.8 23 52-74 32-54 (274)
322 PRK13650 cbiO cobalt transport 97.5 0.00067 1.5E-08 52.1 7.9 23 52-74 34-56 (279)
323 TIGR02782 TrbB_P P-type conjug 97.5 0.0013 2.9E-08 51.1 9.5 64 52-115 133-222 (299)
324 cd03248 ABCC_TAP TAP, the Tran 97.5 0.0016 3.5E-08 48.3 9.6 23 52-74 41-63 (226)
325 TIGR02857 CydD thiol reductant 97.5 0.00096 2.1E-08 55.7 9.3 23 52-74 349-371 (529)
326 TIGR01359 UMP_CMP_kin_fam UMP- 97.5 9.6E-05 2.1E-09 53.0 2.9 23 53-75 1-23 (183)
327 cd03289 ABCC_CFTR2 The CFTR su 97.5 0.0019 4.1E-08 49.6 10.2 23 52-74 31-53 (275)
328 PF02463 SMC_N: RecF/RecN/SMC 97.5 0.0008 1.7E-08 49.7 7.9 44 98-141 159-205 (220)
329 PRK00625 shikimate kinase; Pro 97.5 0.00013 2.9E-09 52.1 3.6 24 53-76 2-25 (173)
330 PRK05541 adenylylsulfate kinas 97.5 0.00014 3.1E-09 51.8 3.8 27 51-77 7-33 (176)
331 TIGR00968 3a0106s01 sulfate AB 97.5 0.00073 1.6E-08 50.6 7.7 23 52-74 27-49 (237)
332 TIGR00064 ftsY signal recognit 97.5 0.00044 9.5E-09 53.0 6.5 26 51-76 72-97 (272)
333 TIGR00708 cobA cob(I)alamin ad 97.5 0.00063 1.4E-08 48.5 6.9 85 51-135 5-140 (173)
334 TIGR00390 hslU ATP-dependent p 97.5 0.00019 4.1E-09 57.9 4.6 54 26-79 11-75 (441)
335 TIGR02525 plasmid_TraJ plasmid 97.4 0.0013 2.8E-08 52.6 9.3 82 52-136 150-261 (372)
336 PF14516 AAA_35: AAA-like doma 97.4 0.0031 6.7E-08 49.7 11.4 49 24-76 8-56 (331)
337 PRK04040 adenylate kinase; Pro 97.4 0.00014 3E-09 52.7 3.5 26 51-76 2-27 (188)
338 PRK05439 pantothenate kinase; 97.4 0.00025 5.5E-09 55.2 5.1 38 39-76 74-111 (311)
339 PRK06067 flagellar accessory p 97.4 0.0013 2.7E-08 49.2 8.7 36 38-74 13-48 (234)
340 PRK13536 nodulation factor exp 97.4 0.00083 1.8E-08 53.2 8.0 23 52-74 68-90 (340)
341 PRK11153 metN DL-methionine tr 97.4 0.0007 1.5E-08 53.6 7.6 23 52-74 32-54 (343)
342 COG1131 CcmA ABC-type multidru 97.4 0.00081 1.8E-08 52.1 7.8 24 52-75 32-55 (293)
343 cd02021 GntK Gluconate kinase 97.4 0.00012 2.6E-09 50.8 2.8 22 53-74 1-22 (150)
344 COG0488 Uup ATPase components 97.4 0.00086 1.9E-08 56.0 8.3 24 52-75 30-53 (530)
345 PF06309 Torsin: Torsin; Inte 97.4 0.0004 8.8E-09 46.8 5.2 48 27-74 25-76 (127)
346 TIGR02322 phosphon_PhnN phosph 97.4 0.00015 3.2E-09 51.8 3.4 24 52-75 2-25 (179)
347 COG0572 Udk Uridine kinase [Nu 97.4 0.00019 4.2E-09 52.8 4.0 28 51-78 8-35 (218)
348 cd02023 UMPK Uridine monophosp 97.4 0.00012 2.5E-09 53.3 2.8 23 53-75 1-23 (198)
349 PRK13635 cbiO cobalt transport 97.4 0.00097 2.1E-08 51.3 8.0 23 52-74 34-56 (279)
350 PRK13652 cbiO cobalt transport 97.4 0.00091 2E-08 51.3 7.8 23 52-74 31-53 (277)
351 COG0194 Gmk Guanylate kinase [ 97.4 0.00047 1E-08 49.5 5.7 25 51-75 4-28 (191)
352 PRK05201 hslU ATP-dependent pr 97.4 0.00024 5.1E-09 57.4 4.6 53 26-78 14-77 (443)
353 COG1102 Cmk Cytidylate kinase 97.4 0.00015 3.2E-09 50.9 3.0 26 53-78 2-27 (179)
354 PRK13947 shikimate kinase; Pro 97.4 0.00017 3.6E-09 51.1 3.3 27 53-79 3-29 (171)
355 PRK14738 gmk guanylate kinase; 97.4 0.00018 3.9E-09 52.9 3.6 32 42-74 5-36 (206)
356 TIGR00554 panK_bact pantothena 97.4 0.00032 6.9E-09 54.2 5.0 25 51-75 62-86 (290)
357 PF03215 Rad17: Rad17 cell cyc 97.4 0.0002 4.3E-09 59.6 4.1 48 27-74 19-68 (519)
358 TIGR01288 nodI ATP-binding ABC 97.4 0.0011 2.3E-08 51.6 8.1 23 52-74 31-53 (303)
359 cd02025 PanK Pantothenate kina 97.4 0.00014 3.1E-09 54.0 3.0 24 53-76 1-24 (220)
360 PRK15115 response regulator Gl 97.4 0.0056 1.2E-07 50.0 12.6 47 27-74 134-180 (444)
361 COG1116 TauB ABC-type nitrate/ 97.4 0.0013 2.8E-08 49.3 7.9 23 52-74 30-52 (248)
362 PRK12723 flagellar biosynthesi 97.4 0.0063 1.4E-07 49.0 12.3 25 51-75 174-198 (388)
363 cd01121 Sms Sms (bacterial rad 97.4 0.0012 2.6E-08 52.8 8.2 39 36-75 68-106 (372)
364 TIGR01192 chvA glucan exporter 97.4 0.0013 2.8E-08 55.7 8.9 23 52-74 362-384 (585)
365 PRK12608 transcription termina 97.4 0.00062 1.3E-08 54.2 6.4 41 35-77 119-159 (380)
366 TIGR02204 MsbA_rel ABC transpo 97.4 0.0013 2.8E-08 55.5 8.8 23 52-74 367-389 (576)
367 PRK10923 glnG nitrogen regulat 97.4 0.0014 3E-08 53.9 8.8 47 27-74 138-184 (469)
368 PRK10789 putative multidrug tr 97.4 0.0013 2.9E-08 55.5 8.8 24 51-74 341-364 (569)
369 COG4555 NatA ABC-type Na+ tran 97.4 0.0024 5.2E-08 46.7 8.8 24 51-74 28-51 (245)
370 PRK06217 hypothetical protein; 97.4 0.00021 4.5E-09 51.4 3.5 24 52-75 2-25 (183)
371 TIGR00958 3a01208 Conjugate Tr 97.4 0.0019 4.2E-08 55.9 10.0 23 52-74 508-530 (711)
372 cd02020 CMPK Cytidine monophos 97.4 0.00019 4.1E-09 49.3 3.2 24 53-76 1-24 (147)
373 PF03308 ArgK: ArgK protein; 97.3 0.00038 8.2E-09 52.6 4.9 42 35-77 14-55 (266)
374 KOG1970 Checkpoint RAD17-RFC c 97.3 0.0011 2.3E-08 54.8 7.8 41 33-74 88-133 (634)
375 PRK11000 maltose/maltodextrin 97.3 0.00092 2E-08 53.5 7.5 23 52-74 30-52 (369)
376 cd03285 ABC_MSH2_euk MutS2 hom 97.3 0.0028 6E-08 47.2 9.5 89 51-140 30-158 (222)
377 COG0563 Adk Adenylate kinase a 97.3 0.00019 4.2E-09 51.5 3.2 22 53-74 2-23 (178)
378 PRK07132 DNA polymerase III su 97.3 0.029 6.3E-07 43.6 15.4 127 36-164 5-161 (299)
379 TIGR01846 type_I_sec_HlyB type 97.3 0.0014 3E-08 56.6 9.0 23 52-74 484-506 (694)
380 KOG0062 ATPase component of AB 97.3 0.00074 1.6E-08 55.4 6.8 24 51-74 106-129 (582)
381 TIGR02868 CydC thiol reductant 97.3 0.0011 2.3E-08 55.5 8.0 23 52-74 362-384 (529)
382 PF03205 MobB: Molybdopterin g 97.3 0.00024 5.3E-09 49.0 3.5 25 52-76 1-25 (140)
383 KOG0652 26S proteasome regulat 97.3 0.0069 1.5E-07 46.1 11.3 135 27-161 171-351 (424)
384 TIGR01193 bacteriocin_ABC ABC- 97.3 0.0016 3.5E-08 56.3 9.2 23 52-74 501-523 (708)
385 cd02024 NRK1 Nicotinamide ribo 97.3 0.00018 4E-09 52.0 2.9 23 53-75 1-23 (187)
386 TIGR02533 type_II_gspE general 97.3 0.0032 6.8E-08 52.2 10.4 82 51-135 242-346 (486)
387 COG1122 CbiO ABC-type cobalt t 97.3 0.0015 3.2E-08 49.0 7.8 23 52-74 31-53 (235)
388 COG5635 Predicted NTPase (NACH 97.3 0.00044 9.4E-09 60.8 5.6 107 51-158 222-371 (824)
389 COG1127 Ttg2A ABC-type transpo 97.3 0.0021 4.5E-08 48.1 8.3 54 87-141 153-212 (263)
390 COG0703 AroK Shikimate kinase 97.3 0.00065 1.4E-08 48.3 5.4 31 52-82 3-33 (172)
391 cd03280 ABC_MutS2 MutS2 homolo 97.3 0.0014 3E-08 47.9 7.4 21 52-72 29-49 (200)
392 TIGR03796 NHPM_micro_ABC1 NHPM 97.3 0.0019 4.1E-08 55.9 9.4 23 52-74 506-528 (710)
393 PRK11160 cysteine/glutathione 97.3 0.0018 3.8E-08 54.8 9.0 23 52-74 367-389 (574)
394 cd00071 GMPK Guanosine monopho 97.3 0.00019 4.1E-09 49.3 2.6 25 53-77 1-25 (137)
395 PRK05703 flhF flagellar biosyn 97.3 0.0057 1.2E-07 49.9 11.5 25 51-75 221-245 (424)
396 PRK13949 shikimate kinase; Pro 97.3 0.00026 5.7E-09 50.4 3.4 25 53-77 3-27 (169)
397 TIGR02314 ABC_MetN D-methionin 97.3 0.0013 2.7E-08 52.2 7.5 23 52-74 32-54 (343)
398 COG4619 ABC-type uncharacteriz 97.3 0.0033 7E-08 44.8 8.6 24 52-75 30-53 (223)
399 PRK14530 adenylate kinase; Pro 97.3 0.00025 5.4E-09 52.3 3.3 24 52-75 4-27 (215)
400 cd03287 ABC_MSH3_euk MutS3 hom 97.3 0.0021 4.5E-08 47.9 8.2 90 51-141 31-160 (222)
401 PRK10751 molybdopterin-guanine 97.3 0.00037 8E-09 49.8 4.0 26 51-76 6-31 (173)
402 TIGR03263 guanyl_kin guanylate 97.3 0.00021 4.6E-09 51.0 2.8 23 52-74 2-24 (180)
403 cd03288 ABCC_SUR2 The SUR doma 97.3 0.0039 8.4E-08 47.3 9.8 23 52-74 48-70 (257)
404 PRK10790 putative multidrug tr 97.3 0.0017 3.8E-08 55.0 8.6 23 52-74 368-390 (592)
405 COG4608 AppF ABC-type oligopep 97.3 0.00079 1.7E-08 51.0 5.8 89 52-141 40-176 (268)
406 COG2401 ABC-type ATPase fused 97.3 0.001 2.3E-08 53.5 6.7 61 87-147 515-580 (593)
407 PRK13894 conjugal transfer ATP 97.3 0.0024 5.3E-08 50.1 8.8 81 51-134 148-253 (319)
408 PRK10463 hydrogenase nickel in 97.3 0.00079 1.7E-08 51.9 5.9 28 51-78 104-131 (290)
409 COG3903 Predicted ATPase [Gene 97.3 6.6E-05 1.4E-09 59.7 0.1 111 51-165 14-155 (414)
410 KOG0726 26S proteasome regulat 97.3 0.00061 1.3E-08 52.4 5.2 79 28-107 186-288 (440)
411 PRK00889 adenylylsulfate kinas 97.3 0.00038 8.2E-09 49.6 3.9 25 51-75 4-28 (175)
412 cd03284 ABC_MutS1 MutS1 homolo 97.3 0.0038 8.2E-08 46.2 9.4 88 52-140 31-158 (216)
413 PRK09452 potA putrescine/sperm 97.3 0.0015 3.2E-08 52.4 7.6 23 52-74 41-63 (375)
414 cd02028 UMPK_like Uridine mono 97.3 0.00026 5.5E-09 50.9 3.0 24 53-76 1-24 (179)
415 PF07088 GvpD: GvpD gas vesicl 97.3 0.00075 1.6E-08 53.8 5.8 38 41-81 3-40 (484)
416 PRK10636 putative ABC transpor 97.3 0.0021 4.6E-08 55.0 9.0 23 52-74 339-361 (638)
417 TIGR02329 propionate_PrpR prop 97.3 0.0014 3.1E-08 54.7 7.8 47 27-74 212-258 (526)
418 PF08477 Miro: Miro-like prote 97.2 0.0003 6.5E-09 46.5 3.1 21 54-74 2-22 (119)
419 PRK13833 conjugal transfer pro 97.2 0.0026 5.6E-08 49.9 8.8 82 52-136 145-251 (323)
420 cd00464 SK Shikimate kinase (S 97.2 0.00032 6.9E-09 48.6 3.4 23 54-76 2-24 (154)
421 PRK11388 DNA-binding transcrip 97.2 0.0019 4E-08 55.3 8.7 48 26-74 324-371 (638)
422 PRK13642 cbiO cobalt transport 97.2 0.002 4.2E-08 49.5 8.0 23 52-74 34-56 (277)
423 TIGR01313 therm_gnt_kin carboh 97.2 0.00022 4.8E-09 50.1 2.6 22 54-75 1-22 (163)
424 PRK11432 fbpC ferric transport 97.2 0.0014 3E-08 52.1 7.4 23 52-74 33-55 (351)
425 COG1066 Sms Predicted ATP-depe 97.2 0.0013 2.8E-08 52.7 7.1 42 36-78 79-120 (456)
426 KOG2035 Replication factor C, 97.2 0.0069 1.5E-07 46.4 10.6 133 28-163 14-197 (351)
427 PF00625 Guanylate_kin: Guanyl 97.2 0.00031 6.6E-09 50.5 3.4 30 51-80 2-31 (183)
428 PF12775 AAA_7: P-loop contain 97.2 0.0011 2.4E-08 50.8 6.6 23 52-74 34-56 (272)
429 PRK05537 bifunctional sulfate 97.2 0.00084 1.8E-08 56.6 6.4 49 27-76 369-417 (568)
430 PRK11650 ugpC glycerol-3-phosp 97.2 0.0017 3.7E-08 51.7 7.8 23 52-74 31-53 (356)
431 PRK00300 gmk guanylate kinase; 97.2 0.00029 6.3E-09 51.4 3.2 25 51-75 5-29 (205)
432 PRK13409 putative ATPase RIL; 97.2 0.0017 3.8E-08 55.0 8.2 23 52-74 366-388 (590)
433 TIGR01842 type_I_sec_PrtD type 97.2 0.0023 5E-08 53.7 8.9 23 52-74 345-367 (544)
434 PRK14737 gmk guanylate kinase; 97.2 0.00032 7E-09 50.7 3.3 25 51-75 4-28 (186)
435 PRK13900 type IV secretion sys 97.2 0.0015 3.3E-08 51.5 7.3 82 51-135 160-270 (332)
436 TIGR01818 ntrC nitrogen regula 97.2 0.0089 1.9E-07 49.0 12.1 47 27-74 134-180 (463)
437 TIGR03797 NHPM_micro_ABC2 NHPM 97.2 0.0025 5.3E-08 55.0 9.0 23 52-74 480-502 (686)
438 CHL00206 ycf2 Ycf2; Provisiona 97.2 0.0032 7E-08 59.0 9.9 24 51-74 1630-1653(2281)
439 PRK13948 shikimate kinase; Pro 97.2 0.00039 8.5E-09 50.1 3.4 29 51-79 10-38 (182)
440 PLN02200 adenylate kinase fami 97.2 0.00041 9E-09 52.0 3.7 24 51-74 43-66 (234)
441 cd03227 ABC_Class2 ABC-type Cl 97.2 0.003 6.4E-08 44.5 7.9 97 52-150 22-154 (162)
442 PRK10078 ribose 1,5-bisphospho 97.2 0.00032 6.9E-09 50.6 2.9 24 52-75 3-26 (186)
443 PRK12339 2-phosphoglycerate ki 97.2 0.00043 9.4E-09 50.5 3.6 25 51-75 3-27 (197)
444 PF13245 AAA_19: Part of AAA d 97.2 0.00045 9.9E-09 42.5 3.2 24 51-74 10-33 (76)
445 TIGR03265 PhnT2 putative 2-ami 97.2 0.0017 3.6E-08 51.7 7.2 23 52-74 31-53 (353)
446 PRK13545 tagH teichoic acids e 97.2 0.0023 5E-08 53.3 8.1 23 52-74 51-73 (549)
447 PRK14527 adenylate kinase; Pro 97.2 0.0004 8.7E-09 50.3 3.4 24 51-74 6-29 (191)
448 TIGR03258 PhnT 2-aminoethylpho 97.2 0.0019 4.1E-08 51.6 7.4 23 52-74 32-54 (362)
449 PRK14529 adenylate kinase; Pro 97.2 0.0043 9.3E-08 46.2 8.8 66 53-118 2-98 (223)
450 PF13521 AAA_28: AAA domain; P 97.2 0.00041 8.9E-09 48.8 3.3 21 54-74 2-22 (163)
451 COG0529 CysC Adenylylsulfate k 97.2 0.00052 1.1E-08 48.9 3.7 27 51-77 23-49 (197)
452 COG3854 SpoIIIAA ncharacterize 97.2 0.0074 1.6E-07 45.1 9.8 80 52-134 138-252 (308)
453 COG0714 MoxR-like ATPases [Gen 97.1 0.00073 1.6E-08 53.2 4.9 51 27-82 24-74 (329)
454 PRK15439 autoinducer 2 ABC tra 97.1 0.0022 4.8E-08 53.4 8.0 23 52-74 38-60 (510)
455 cd02027 APSK Adenosine 5'-phos 97.1 0.00039 8.5E-09 48.4 3.0 23 53-75 1-23 (149)
456 cd01428 ADK Adenylate kinase ( 97.1 0.0004 8.7E-09 50.1 3.2 21 54-74 2-22 (194)
457 cd01394 radB RadB. The archaea 97.1 0.00092 2E-08 49.3 5.1 37 38-75 7-43 (218)
458 PRK14532 adenylate kinase; Pro 97.1 0.00041 8.8E-09 50.0 3.1 23 53-75 2-24 (188)
459 COG4586 ABC-type uncharacteriz 97.1 0.0025 5.4E-08 48.6 7.3 46 27-74 27-73 (325)
460 PRK14531 adenylate kinase; Pro 97.1 0.00047 1E-08 49.6 3.4 24 52-75 3-26 (183)
461 COG1134 TagH ABC-type polysacc 97.1 0.003 6.4E-08 47.3 7.6 23 52-74 54-76 (249)
462 PRK13851 type IV secretion sys 97.1 0.0033 7.1E-08 49.8 8.3 66 51-116 162-255 (344)
463 PHA02530 pseT polynucleotide k 97.1 0.00047 1E-08 53.3 3.5 24 52-75 3-26 (300)
464 PRK10416 signal recognition pa 97.1 0.001 2.2E-08 52.1 5.4 26 51-76 114-139 (318)
465 PLN03073 ABC transporter F fam 97.1 0.0037 8.1E-08 54.2 9.3 23 52-74 536-558 (718)
466 PRK05917 DNA polymerase III su 97.1 0.017 3.7E-07 44.6 12.0 123 35-159 5-166 (290)
467 COG3910 Predicted ATPase [Gene 97.1 0.0054 1.2E-07 44.4 8.5 24 51-74 37-60 (233)
468 PRK11147 ABC transporter ATPas 97.1 0.0033 7.1E-08 53.8 8.8 23 52-74 346-368 (635)
469 COG4133 CcmA ABC-type transpor 97.1 0.003 6.5E-08 45.6 7.2 23 52-74 29-51 (209)
470 TIGR03574 selen_PSTK L-seryl-t 97.1 0.00039 8.5E-09 52.5 3.0 23 53-75 1-23 (249)
471 COG2804 PulE Type II secretory 97.1 0.0093 2E-07 49.1 10.9 67 51-117 258-347 (500)
472 PRK13946 shikimate kinase; Pro 97.1 0.00049 1.1E-08 49.6 3.3 27 51-77 10-36 (184)
473 PRK05057 aroK shikimate kinase 97.1 0.0005 1.1E-08 49.1 3.3 25 52-76 5-29 (172)
474 KOG0927 Predicted transporter 97.1 0.0035 7.6E-08 51.9 8.4 23 52-74 417-439 (614)
475 PRK15064 ABC transporter ATP-b 97.1 0.0037 7.9E-08 52.4 8.9 96 53-151 347-510 (530)
476 PRK13975 thymidylate kinase; P 97.1 0.00057 1.2E-08 49.5 3.6 25 52-76 3-27 (196)
477 PRK14722 flhF flagellar biosyn 97.1 0.0026 5.6E-08 50.9 7.5 25 51-75 137-161 (374)
478 COG1428 Deoxynucleoside kinase 97.1 0.00051 1.1E-08 50.2 3.2 26 51-76 4-29 (216)
479 PRK09536 btuD corrinoid ABC tr 97.1 0.0038 8.2E-08 50.5 8.5 23 52-74 30-52 (402)
480 TIGR02173 cyt_kin_arch cytidyl 97.1 0.00056 1.2E-08 48.2 3.4 23 53-75 2-24 (171)
481 PRK04182 cytidylate kinase; Pr 97.1 0.00055 1.2E-08 48.6 3.4 23 53-75 2-24 (180)
482 KOG1532 GTPase XAB1, interacts 97.1 0.00052 1.1E-08 52.2 3.3 30 51-80 19-48 (366)
483 PRK03846 adenylylsulfate kinas 97.1 0.00065 1.4E-08 49.5 3.7 25 51-75 24-48 (198)
484 COG1936 Predicted nucleotide k 97.1 0.00043 9.4E-09 49.0 2.6 20 53-72 2-21 (180)
485 TIGR02538 type_IV_pilB type IV 97.1 0.0063 1.4E-07 51.4 9.9 82 51-135 316-420 (564)
486 COG1119 ModF ABC-type molybden 97.1 0.0056 1.2E-07 45.9 8.4 23 52-74 58-80 (257)
487 PRK10436 hypothetical protein; 97.1 0.0069 1.5E-07 49.9 9.8 66 51-116 218-306 (462)
488 PRK09435 membrane ATPase/prote 97.1 0.0012 2.6E-08 51.9 5.2 39 37-76 43-81 (332)
489 PLN02318 phosphoribulokinase/u 97.1 0.00092 2E-08 56.2 4.7 25 51-75 65-89 (656)
490 TIGR01650 PD_CobS cobaltochela 97.1 0.0017 3.7E-08 50.8 6.0 42 33-79 51-92 (327)
491 cd00820 PEPCK_HprK Phosphoenol 97.0 0.00064 1.4E-08 44.6 3.0 21 52-72 16-36 (107)
492 PF03193 DUF258: Protein of un 97.0 0.001 2.2E-08 46.9 4.2 35 34-74 24-58 (161)
493 PF13555 AAA_29: P-loop contai 97.0 0.00079 1.7E-08 39.7 3.1 22 53-74 25-46 (62)
494 COG0378 HypB Ni2+-binding GTPa 97.0 0.0031 6.7E-08 45.7 6.7 32 51-82 13-44 (202)
495 COG1703 ArgK Putative periplas 97.0 0.0011 2.3E-08 51.0 4.6 40 37-77 38-77 (323)
496 PF13086 AAA_11: AAA domain; P 97.0 0.00082 1.8E-08 49.4 4.0 23 53-75 19-41 (236)
497 smart00174 RHO Rho (Ras homolo 97.0 0.0081 1.7E-07 42.3 8.9 21 54-74 1-21 (174)
498 COG1123 ATPase components of v 97.0 0.0041 8.9E-08 51.7 8.3 23 52-74 36-58 (539)
499 TIGR00176 mobB molybdopterin-g 97.0 0.00064 1.4E-08 47.7 3.2 25 53-77 1-25 (155)
500 PRK03731 aroL shikimate kinase 97.0 0.00072 1.6E-08 47.9 3.5 26 52-77 3-28 (171)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.97 E-value=6.3e-30 Score=226.36 Aligned_cols=169 Identities=36% Similarity=0.587 Sum_probs=147.3
Q ss_pred ChhHHHHHHHHHHHHhccccCCCCCCCccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhcccc
Q 040354 1 PESKLIDEIFKEVLDWLDDTFQTENNNHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITRRFE 80 (172)
Q Consensus 1 ~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~ 80 (172)
+|+++|++|+++|+.++..+++ ...+.++||+..++++..+|.....+ .++++||||+|+||||||+++++.+..+|+
T Consensus 159 ~E~~~i~~Iv~~v~~~l~~~~~-~~~~~~vG~~~~l~~l~~lL~l~~~~-~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~ 236 (1153)
T PLN03210 159 NEAKMIEEIANDVLGKLNLTPS-NDFEDFVGIEDHIAKMSSLLHLESEE-VRMVGIWGSSGIGKTTIARALFSRLSRQFQ 236 (1153)
T ss_pred CHHHHHHHHHHHHHHhhccccC-cccccccchHHHHHHHHHHHccccCc-eEEEEEEcCCCCchHHHHHHHHHHHhhcCC
Confidence 5899999999999999998887 77889999999999999999866555 899999999999999999999999777764
Q ss_pred Cc---C-------------------------------------cc---cHHHHHHHhCCCeeEEEEecCCCHHhHHHHHh
Q 040354 81 EF---P-------------------------------------NI---GLNFQSKRLTRKKLLIVFDDVHHPRQIDCLIE 117 (172)
Q Consensus 81 ~~---~-------------------------------------~~---~~~~~~~~l~~~~~LlvlDdv~~~~~~~~l~~ 117 (172)
.. + ++ ....+++.+.++++||||||||+..+|+.+..
T Consensus 237 g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~ 316 (1153)
T PLN03210 237 SSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQDVLDALAG 316 (1153)
T ss_pred eEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHh
Confidence 32 0 00 11345677888999999999999999999988
Q ss_pred hccCCCCCcEEEEEeCChhHHHhcCCCceEEcCCCCHHHHHHHHhhhcCCCCCC
Q 040354 118 CLDWFASASRIIIISRDKQALISCGVNKIYQMQELVHADALKLFSECAFEGDHP 171 (172)
Q Consensus 118 ~~~~~~~~s~iiiTtr~~~~~~~~~~~~~~~l~~l~~~~~~~lf~~~a~~~~~~ 171 (172)
...++++|++||+|||+..++..++..++|+++.+++++|++||.++||++..|
T Consensus 317 ~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~ 370 (1153)
T PLN03210 317 QTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSP 370 (1153)
T ss_pred hCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCC
Confidence 888888999999999999999887778899999999999999999999987654
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.93 E-value=2.6e-26 Score=176.06 Aligned_cols=137 Identities=31% Similarity=0.434 Sum_probs=106.8
Q ss_pred ccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHH--HhccccCc------------------------C--
Q 040354 32 IESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNK--ITRRFEEF------------------------P-- 83 (172)
Q Consensus 32 r~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~--~~~~f~~~------------------------~-- 83 (172)
|+.++++|.++|.....+ .++++|+|+||+||||||..++++ +..+|+.. .
T Consensus 1 re~~~~~l~~~L~~~~~~-~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~ 79 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNE-VRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDS 79 (287)
T ss_dssp -HHHHHHHHHHHHTTTTS-SEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-S
T ss_pred CHHHHHHHHHHhhCCCCC-eEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccccccccccc
Confidence 788999999999975544 899999999999999999999988 78888665 1
Q ss_pred ------cc--cHHHHHHHhCCCeeEEEEecCCCHHhHHHHHhhccCCCCCcEEEEEeCChhHHHhcCC-CceEEcCCCCH
Q 040354 84 ------NI--GLNFQSKRLTRKKLLIVFDDVHHPRQIDCLIECLDWFASASRIIIISRDKQALISCGV-NKIYQMQELVH 154 (172)
Q Consensus 84 ------~~--~~~~~~~~l~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~~s~iiiTtr~~~~~~~~~~-~~~~~l~~l~~ 154 (172)
+. ....+++.+.++++||||||||+...|+.+...++....+++||+|||+..++..+.. ...+++.+|+.
T Consensus 80 ~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~ 159 (287)
T PF00931_consen 80 SISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSE 159 (287)
T ss_dssp TSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--H
T ss_pred ccccccccccccccchhhhccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 11 5677788888999999999999999998888777766679999999999988776543 67899999999
Q ss_pred HHHHHHHhhhcCCCC
Q 040354 155 ADALKLFSECAFEGD 169 (172)
Q Consensus 155 ~~~~~lf~~~a~~~~ 169 (172)
+++++||.+.++...
T Consensus 160 ~ea~~L~~~~~~~~~ 174 (287)
T PF00931_consen 160 EEALELFKKRAGRKE 174 (287)
T ss_dssp HHHHHHHHHHHTSHS
T ss_pred ccccccccccccccc
Confidence 999999999987654
No 3
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.91 E-value=1e-24 Score=187.25 Aligned_cols=136 Identities=24% Similarity=0.315 Sum_probs=121.9
Q ss_pred ccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHH---HhccccCc------------------------
Q 040354 30 VGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNK---ITRRFEEF------------------------ 82 (172)
Q Consensus 30 ~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~---~~~~f~~~------------------------ 82 (172)
||.++.++.+.+.|..+.. .+++|+||||+||||||++++|+ +.++|+..
T Consensus 161 VG~e~~~~kl~~~L~~d~~---~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~ 237 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDV---GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGL 237 (889)
T ss_pred ccHHHHHHHHHHHhccCCC---CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhcc
Confidence 9999999999999987763 79999999999999999999998 56778877
Q ss_pred -----C--cc--cHHHHHHHhCCCeeEEEEecCCCHHhHHHHHhhccCCCCCcEEEEEeCChhHHHh-cCCCceEEcCCC
Q 040354 83 -----P--NI--GLNFQSKRLTRKKLLIVFDDVHHPRQIDCLIECLDWFASASRIIIISRDKQALIS-CGVNKIYQMQEL 152 (172)
Q Consensus 83 -----~--~~--~~~~~~~~l~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~~s~iiiTtr~~~~~~~-~~~~~~~~l~~l 152 (172)
. +. ....+.+.|..+|++||+||||+..+|+.+...++...+||+|++|||+..++.. ++....+++..|
T Consensus 238 ~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L 317 (889)
T KOG4658|consen 238 LDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECL 317 (889)
T ss_pred CCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCcccccccc
Confidence 0 11 5667778889999999999999999999999999888889999999999999988 777888999999
Q ss_pred CHHHHHHHHhhhcCCC
Q 040354 153 VHADALKLFSECAFEG 168 (172)
Q Consensus 153 ~~~~~~~lf~~~a~~~ 168 (172)
+.+|||.||.+.+|+.
T Consensus 318 ~~~eaW~LF~~~v~~~ 333 (889)
T KOG4658|consen 318 TPEEAWDLFQKKVGPN 333 (889)
T ss_pred CccccHHHHHHhhccc
Confidence 9999999999999886
No 4
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.48 E-value=2.1e-13 Score=106.58 Aligned_cols=110 Identities=19% Similarity=0.351 Sum_probs=80.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhccccCcCc-------c--cHHHH-HHHhCCCeeEEEEecCC--CHHhHHHHHhh
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKITRRFEEFPN-------I--GLNFQ-SKRLTRKKLLIVFDDVH--HPRQIDCLIEC 118 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~-------~--~~~~~-~~~l~~~~~LlvlDdv~--~~~~~~~l~~~ 118 (172)
.....+||++|+||||||+.+.......|...+- + ..+.- +....+++.+|++|+|. +..|.+.|++.
T Consensus 48 l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~ 127 (436)
T COG2256 48 LHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPH 127 (436)
T ss_pred CceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhh
Confidence 6788999999999999999999987777766522 2 22222 22334678999999996 66777887766
Q ss_pred ccCCCCCcEEEE--EeCChhHH---HhcCCCceEEcCCCCHHHHHHHHhh
Q 040354 119 LDWFASASRIII--ISRDKQAL---ISCGVNKIYQMQELVHADALKLFSE 163 (172)
Q Consensus 119 ~~~~~~~s~iii--Ttr~~~~~---~~~~~~~~~~l~~l~~~~~~~lf~~ 163 (172)
+. .|.-|+| ||.|+... .......++++++|+.++...++.+
T Consensus 128 vE---~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~r 174 (436)
T COG2256 128 VE---NGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKR 174 (436)
T ss_pred hc---CCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHH
Confidence 65 6776666 56655322 1124567899999999999998877
No 5
>PF05729 NACHT: NACHT domain
Probab=99.42 E-value=4.1e-12 Score=89.42 Aligned_cols=113 Identities=17% Similarity=0.195 Sum_probs=73.4
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhccc------cCc-----------C---cc--------------cHHHHHHHh-CC
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKITRRF------EEF-----------P---NI--------------GLNFQSKRL-TR 96 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~~~~f------~~~-----------~---~~--------------~~~~~~~~l-~~ 96 (172)
+++.|+|.+|+||||+++.++..+.... ... . .+ ....+...+ ..
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKN 80 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcC
Confidence 4789999999999999999998843332 111 0 01 011111122 34
Q ss_pred CeeEEEEecCCCHHh---------HHHHHhhccC--CCCCcEEEEEeCChhH---HHhcCCCceEEcCCCCHHHHHHHHh
Q 040354 97 KKLLIVFDDVHHPRQ---------IDCLIECLDW--FASASRIIIISRDKQA---LISCGVNKIYQMQELVHADALKLFS 162 (172)
Q Consensus 97 ~~~LlvlDdv~~~~~---------~~~l~~~~~~--~~~~s~iiiTtr~~~~---~~~~~~~~~~~l~~l~~~~~~~lf~ 162 (172)
++++||+|++++... +..+...+.. ..+++++++|+|.... .........+++.+|++++..+++.
T Consensus 81 ~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 160 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQYLR 160 (166)
T ss_pred CceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHHHH
Confidence 689999999974322 2222322222 2468999999998765 3334444689999999999999776
Q ss_pred hh
Q 040354 163 EC 164 (172)
Q Consensus 163 ~~ 164 (172)
+.
T Consensus 161 ~~ 162 (166)
T PF05729_consen 161 KY 162 (166)
T ss_pred HH
Confidence 54
No 6
>PRK06893 DNA replication initiation factor; Validated
Probab=99.36 E-value=1.1e-11 Score=92.59 Aligned_cols=116 Identities=13% Similarity=0.167 Sum_probs=72.9
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhccccCc-----Ccc--cHHHHHHHhCCCeeEEEEecCCCH---HhHH-HHHhhc
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKITRRFEEF-----PNI--GLNFQSKRLTRKKLLIVFDDVHHP---RQID-CLIECL 119 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~-----~~~--~~~~~~~~l~~~~~LlvlDdv~~~---~~~~-~l~~~~ 119 (172)
.+.+.|||++|+|||+|++.++++...+.... ... ....+.+.+. +.-+|++||+|.. ..|. .+...+
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~-~~dlLilDDi~~~~~~~~~~~~l~~l~ 117 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYFSPAVLENLE-QQDLVCLDDLQAVIGNEEWELAIFDLF 117 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhhhhHHHHhhcc-cCCEEEEeChhhhcCChHHHHHHHHHH
Confidence 36789999999999999999999853321111 100 1112222222 2358999999853 3444 333333
Q ss_pred cCCC-CCcEEEE-EeCC---------hhHHHhcCCCceEEcCCCCHHHHHHHHhhhcCC
Q 040354 120 DWFA-SASRIII-ISRD---------KQALISCGVNKIYQMQELVHADALKLFSECAFE 167 (172)
Q Consensus 120 ~~~~-~~s~iii-Ttr~---------~~~~~~~~~~~~~~l~~l~~~~~~~lf~~~a~~ 167 (172)
.... .+..+|+ |+.. +.+...+.....++++++++++.++++.+.++.
T Consensus 118 n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~ 176 (229)
T PRK06893 118 NRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQ 176 (229)
T ss_pred HHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHH
Confidence 3222 3555554 4443 355666666778999999999999999988763
No 7
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.30 E-value=3.6e-11 Score=97.00 Aligned_cols=132 Identities=17% Similarity=0.319 Sum_probs=85.9
Q ss_pred CccccccchHHH---HHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCcC-------cc--cHHHHHHH-
Q 040354 27 NHLVGIESRTEE---IESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITRRFEEFP-------NI--GLNFQSKR- 93 (172)
Q Consensus 27 ~~~~Gr~~~~~~---l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~-------~~--~~~~~~~~- 93 (172)
+.++|++..+.. +.+++.... ...+.|+|++|+||||||+.+++.....|.... ++ ........
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~~---~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~~~~~ir~ii~~~~~~~ 88 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAGR---LSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSGVKDLREVIEEARQRR 88 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcCC---CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccccHHHHHHHHHHHHHhh
Confidence 678998877665 777776443 467889999999999999999998665554331 11 11111111
Q ss_pred hCCCeeEEEEecCCCH--HhHHHHHhhccCCCCCcEEEEE--eCChh--HH-HhcCCCceEEcCCCCHHHHHHHHhhh
Q 040354 94 LTRKKLLIVFDDVHHP--RQIDCLIECLDWFASASRIIII--SRDKQ--AL-ISCGVNKIYQMQELVHADALKLFSEC 164 (172)
Q Consensus 94 l~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~s~iiiT--tr~~~--~~-~~~~~~~~~~l~~l~~~~~~~lf~~~ 164 (172)
..+++.+|++|+++.. .+.+.+...+. .+..+++. |.+.. +. ........+++.+++.++...++.+.
T Consensus 89 ~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~ 163 (413)
T PRK13342 89 SAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRA 163 (413)
T ss_pred hcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHH
Confidence 1346789999999844 45666665554 34445543 33322 11 11223467999999999999988764
No 8
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.28 E-value=2.2e-11 Score=90.16 Aligned_cols=133 Identities=20% Similarity=0.314 Sum_probs=74.8
Q ss_pred cccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhc-cccCc-------------------------
Q 040354 29 LVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITR-RFEEF------------------------- 82 (172)
Q Consensus 29 ~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~-~f~~~------------------------- 82 (172)
|+||+.+++.|.+++..+. ...+.|+|+.|+|||+|++.+.+.... .+...
T Consensus 1 F~gR~~el~~l~~~l~~~~---~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGP---SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH-----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhhc---CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHH
Confidence 7899999999999887653 468999999999999999999988532 11111
Q ss_pred ---------C-------------cc--cHHHHHHHhC--CCeeEEEEecCCCHH-------h-HHHHHhhccC--CCCCc
Q 040354 83 ---------P-------------NI--GLNFQSKRLT--RKKLLIVFDDVHHPR-------Q-IDCLIECLDW--FASAS 126 (172)
Q Consensus 83 ---------~-------------~~--~~~~~~~~l~--~~~~LlvlDdv~~~~-------~-~~~l~~~~~~--~~~~s 126 (172)
. .. ....+.+.+. +++++||+||++... . ...+...+.. .....
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 157 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNV 157 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTE
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCc
Confidence 0 00 1111112222 135999999996444 1 2233333322 12333
Q ss_pred EEEEEeCChhHHHh--------cCCCceEEcCCCCHHHHHHHHhhh
Q 040354 127 RIIIISRDKQALIS--------CGVNKIYQMQELVHADALKLFSEC 164 (172)
Q Consensus 127 ~iiiTtr~~~~~~~--------~~~~~~~~l~~l~~~~~~~lf~~~ 164 (172)
.+|+++....+... .+....+.+++|+.+++++++...
T Consensus 158 ~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~ 203 (234)
T PF01637_consen 158 SIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKEL 203 (234)
T ss_dssp EEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHH
T ss_pred eEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHH
Confidence 45555554444433 233345999999999999988774
No 9
>PF13173 AAA_14: AAA domain
Probab=99.28 E-value=3.7e-11 Score=81.79 Aligned_cols=107 Identities=13% Similarity=0.123 Sum_probs=75.1
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHh--ccccCc--Ccc---------cHHHHHHHhCCCeeEEEEecCCCHHhHHHHHh
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKIT--RRFEEF--PNI---------GLNFQSKRLTRKKLLIVFDDVHHPRQIDCLIE 117 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~--~~f~~~--~~~---------~~~~~~~~l~~~~~LlvlDdv~~~~~~~~l~~ 117 (172)
.+++.|.|+.|+|||||+++++.+.. .++-.. ++. ....+.+....+..+++||++.....|.....
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iDEiq~~~~~~~~lk 81 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPDLLEYFLELIKPGKKYIFIDEIQYLPDWEDALK 81 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhhhHHHHHHhhccCCcEEEEehhhhhccHHHHHH
Confidence 47899999999999999999998754 221111 111 11223333334678999999998888888877
Q ss_pred hccCCCCCcEEEEEeCChhHHHh------cCCCceEEcCCCCHHHH
Q 040354 118 CLDWFASASRIIIISRDKQALIS------CGVNKIYQMQELVHADA 157 (172)
Q Consensus 118 ~~~~~~~~s~iiiTtr~~~~~~~------~~~~~~~~l~~l~~~~~ 157 (172)
.+....+..+|++|+........ .+....++|.||+.+|.
T Consensus 82 ~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 82 FLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred HHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 77665567889999988765533 12334689999998874
No 10
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.25 E-value=1.4e-10 Score=92.96 Aligned_cols=141 Identities=16% Similarity=0.162 Sum_probs=87.8
Q ss_pred CCCCccccccchHHHHHHHhcCC-CCCCeeEEEEEcCCCchHHHHHHHHHHHHhccc---cCc-----------------
Q 040354 24 ENNNHLVGIESRTEEIESVLGVG-STMNICKLGISGSGDIGKITIAGAIFNKITRRF---EEF----------------- 82 (172)
Q Consensus 24 ~~~~~~~Gr~~~~~~l~~~l~~~-~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f---~~~----------------- 82 (172)
..++.++||+++++.|...+... .+.....+.|+|++|+|||++++.++++..... ...
T Consensus 27 ~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i 106 (394)
T PRK00411 27 YVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEI 106 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHH
Confidence 56688999999999999988522 111146789999999999999999998854321 111
Q ss_pred -----C--------cc--cHHHHHHHhC--CCeeEEEEecCCCHH------hHHHHHhhccCCCCCcE--EEEEeCChhH
Q 040354 83 -----P--------NI--GLNFQSKRLT--RKKLLIVFDDVHHPR------QIDCLIECLDWFASASR--IIIISRDKQA 137 (172)
Q Consensus 83 -----~--------~~--~~~~~~~~l~--~~~~LlvlDdv~~~~------~~~~l~~~~~~~~~~s~--iiiTtr~~~~ 137 (172)
. +. ....+.+.+. ++..+||||+++... .+..+....... .+++ +|.++.+..+
T Consensus 107 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~-~~~~v~vI~i~~~~~~ 185 (394)
T PRK00411 107 ARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEY-PGARIGVIGISSDLTF 185 (394)
T ss_pred HHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhcc-CCCeEEEEEEECCcch
Confidence 0 00 1223333333 345899999998643 233333322211 2333 5666665443
Q ss_pred HHhcC-------CCceEEcCCCCHHHHHHHHhhhc
Q 040354 138 LISCG-------VNKIYQMQELVHADALKLFSECA 165 (172)
Q Consensus 138 ~~~~~-------~~~~~~l~~l~~~~~~~lf~~~a 165 (172)
...+. ....+.+.+++.++..+++...+
T Consensus 186 ~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~ 220 (394)
T PRK00411 186 LYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRV 220 (394)
T ss_pred hhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHH
Confidence 32221 12467899999999999887654
No 11
>PLN03025 replication factor C subunit; Provisional
Probab=99.21 E-value=2.4e-10 Score=89.25 Aligned_cols=135 Identities=14% Similarity=0.289 Sum_probs=88.0
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHH-hccccCc------Ccc-cHHHHHHHh----
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKI-TRRFEEF------PNI-GLNFQSKRL---- 94 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~-~~~f~~~------~~~-~~~~~~~~l---- 94 (172)
++++|.++.++.|.+++.... .+.+.++|++|+||||+|..+++.+ ...|... .+. ..+.++..+
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~~---~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~~vr~~i~~~~ 89 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDGN---MPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDVVRNKIKMFA 89 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcCC---CceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHHHHHHHHHHHH
Confidence 678899988888888877543 3457899999999999999999985 3333211 111 222333221
Q ss_pred -------CCCeeEEEEecCCCH--HhHHHHHhhccCCCCCcEEEEEeCCh-hHHHhc-CCCceEEcCCCCHHHHHHHHhh
Q 040354 95 -------TRKKLLIVFDDVHHP--RQIDCLIECLDWFASASRIIIISRDK-QALISC-GVNKIYQMQELVHADALKLFSE 163 (172)
Q Consensus 95 -------~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~s~iiiTtr~~-~~~~~~-~~~~~~~l~~l~~~~~~~lf~~ 163 (172)
.++.-++++|+++.. ...+.+...+......+++|+++... .+...+ .....+++.++++++....+.+
T Consensus 90 ~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~ 169 (319)
T PLN03025 90 QKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMK 169 (319)
T ss_pred hccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHHHHHHHH
Confidence 134569999999754 44556665665545667777766543 222211 2235789999999998877765
Q ss_pred h
Q 040354 164 C 164 (172)
Q Consensus 164 ~ 164 (172)
.
T Consensus 170 i 170 (319)
T PLN03025 170 V 170 (319)
T ss_pred H
Confidence 4
No 12
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.20 E-value=1.4e-10 Score=89.92 Aligned_cols=139 Identities=15% Similarity=0.187 Sum_probs=84.5
Q ss_pred CccccccchHHHHHHHhcCC--CCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc--Ccc-cHHHHHHHhC--CCee
Q 040354 27 NHLVGIESRTEEIESVLGVG--STMNICKLGISGSGDIGKITIAGAIFNKITRRFEEF--PNI-GLNFQSKRLT--RKKL 99 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~--~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~--~~~-~~~~~~~~l~--~~~~ 99 (172)
..|+|++..++.|..++... .......+.++|++|+|||+||+.+++.....+... ... ....+...+. ....
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 83 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDLAAILTNLEEGD 83 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCchhHHHHHHhcccCC
Confidence 46899999999998888621 111145688999999999999999999865443322 111 1122222221 2457
Q ss_pred EEEEecCCCH--HhHHHHHhhccC-------------------CCCCcEEEEEeCChhHHHhc--CCCceEEcCCCCHHH
Q 040354 100 LIVFDDVHHP--RQIDCLIECLDW-------------------FASASRIIIISRDKQALISC--GVNKIYQMQELVHAD 156 (172)
Q Consensus 100 LlvlDdv~~~--~~~~~l~~~~~~-------------------~~~~s~iiiTtr~~~~~~~~--~~~~~~~l~~l~~~~ 156 (172)
+|++||++.. ...+.+...+.. ..+.+-|..|++...+...+ .....+++.+++.++
T Consensus 84 vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e 163 (305)
T TIGR00635 84 VLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEE 163 (305)
T ss_pred EEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHhhcceEEEeCCCCHHH
Confidence 8999999743 223333322211 11233344566654333221 123467999999999
Q ss_pred HHHHHhhhc
Q 040354 157 ALKLFSECA 165 (172)
Q Consensus 157 ~~~lf~~~a 165 (172)
..+++.+.+
T Consensus 164 ~~~il~~~~ 172 (305)
T TIGR00635 164 LAEIVSRSA 172 (305)
T ss_pred HHHHHHHHH
Confidence 999988664
No 13
>PRK09087 hypothetical protein; Validated
Probab=99.18 E-value=7.4e-10 Score=82.48 Aligned_cols=112 Identities=12% Similarity=0.071 Sum_probs=69.8
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhccccCcCcccHHHHHHHhCCCeeEEEEecCCCHH-hHHHHHhhccCC-CCCcEE
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKITRRFEEFPNIGLNFQSKRLTRKKLLIVFDDVHHPR-QIDCLIECLDWF-ASASRI 128 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~LlvlDdv~~~~-~~~~l~~~~~~~-~~~s~i 128 (172)
.+.+.|||++|+|||+|++.++......|-...++..+.+. .+. .-+|++||++... +-..++..+... ..|..+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~~~~~~-~~~--~~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~i 120 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDALLIHPNEIGSDAAN-AAA--EGPVLIEDIDAGGFDETGLFHLINSVRQAGTSL 120 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcchHHHH-hhh--cCeEEEECCCCCCCCHHHHHHHHHHHHhCCCeE
Confidence 36799999999999999999887643322211111111221 111 1478889995321 112233333211 246678
Q ss_pred EEEeCC---------hhHHHhcCCCceEEcCCCCHHHHHHHHhhhc
Q 040354 129 IIISRD---------KQALISCGVNKIYQMQELVHADALKLFSECA 165 (172)
Q Consensus 129 iiTtr~---------~~~~~~~~~~~~~~l~~l~~~~~~~lf~~~a 165 (172)
|+|++. +++...+....++++++++.++..+++.+.+
T Consensus 121 lits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~ 166 (226)
T PRK09087 121 LMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLF 166 (226)
T ss_pred EEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHH
Confidence 988863 3455555677789999999999999888765
No 14
>PRK06620 hypothetical protein; Validated
Probab=99.17 E-value=4.6e-10 Score=82.94 Aligned_cols=141 Identities=13% Similarity=0.062 Sum_probs=81.8
Q ss_pred ccCCCCCCCccccc-cc-hHHHHHHHhcCCCCCC-eeEEEEEcCCCchHHHHHHHHHHHHhccccCcCcccHHHHHHHhC
Q 040354 19 DTFQTENNNHLVGI-ES-RTEEIESVLGVGSTMN-ICKLGISGSGDIGKITIAGAIFNKITRRFEEFPNIGLNFQSKRLT 95 (172)
Q Consensus 19 ~~~~~~~~~~~~Gr-~~-~~~~l~~~l~~~~~~~-~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~l~ 95 (172)
..+.+..++.++|. +. ....+.+|-....... .+.+.|||++|+|||+|++.+++.....|.. .. ......+.
T Consensus 9 ~~~~~tfd~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~--~~~~~~~~ 84 (214)
T PRK06620 9 TSSKYHPDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DI--FFNEEILE 84 (214)
T ss_pred CCCCCCchhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hh--hhchhHHh
Confidence 33333566777786 22 3444455543211110 1679999999999999999987764332221 11 00111222
Q ss_pred CCeeEEEEecCCCHHhHHHHHhhccCC-CCCcEEEEEeCCh-------hHHHhcCCCceEEcCCCCHHHHHHHHhhhc
Q 040354 96 RKKLLIVFDDVHHPRQIDCLIECLDWF-ASASRIIIISRDK-------QALISCGVNKIYQMQELVHADALKLFSECA 165 (172)
Q Consensus 96 ~~~~LlvlDdv~~~~~~~~l~~~~~~~-~~~s~iiiTtr~~-------~~~~~~~~~~~~~l~~l~~~~~~~lf~~~a 165 (172)
..-+|++||++...+ ..+...+... ..|..+|+|++.. .+...+...-+++++++++++...++.+.+
T Consensus 85 -~~d~lliDdi~~~~~-~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~ 160 (214)
T PRK06620 85 -KYNAFIIEDIENWQE-PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHF 160 (214)
T ss_pred -cCCEEEEeccccchH-HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHH
Confidence 235788999975432 1222222211 2566788888743 233444556689999999999888877654
No 15
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.17 E-value=7.3e-10 Score=81.43 Aligned_cols=147 Identities=16% Similarity=0.186 Sum_probs=82.2
Q ss_pred HhccccCCCCCCCccccccchHHHHHHHhc--CCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc--Ccc-cHHH
Q 040354 15 DWLDDTFQTENNNHLVGIESRTEEIESVLG--VGSTMNICKLGISGSGDIGKITIAGAIFNKITRRFEEF--PNI-GLNF 89 (172)
Q Consensus 15 ~~~~~~~~~~~~~~~~Gr~~~~~~l~~~l~--~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~--~~~-~~~~ 89 (172)
.++.+..+ ++|+|.+..++.+.-++. ...++...-+.+|||+|+||||||..++++...+|... ..+ -...
T Consensus 16 ~~lRP~~L----~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~~d 91 (233)
T PF05496_consen 16 ERLRPKSL----DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKAGD 91 (233)
T ss_dssp HHTS-SSC----CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SCHH
T ss_pred HhcCCCCH----HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhHHH
Confidence 44555555 889999998888766655 12222267899999999999999999999977776544 112 1222
Q ss_pred HHHHhC--CCeeEEEEecCC--CHHhHHHHHhhccCCC--------CC-----------cEEEEEeCChhHHHhcCC--C
Q 040354 90 QSKRLT--RKKLLIVFDDVH--HPRQIDCLIECLDWFA--------SA-----------SRIIIISRDKQALISCGV--N 144 (172)
Q Consensus 90 ~~~~l~--~~~~LlvlDdv~--~~~~~~~l~~~~~~~~--------~~-----------s~iiiTtr~~~~~~~~~~--~ 144 (172)
+...+. .++-+|++|+++ +..+-+.|.+.+..+. ++ +-|=.|||...+...+.. .
T Consensus 92 l~~il~~l~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFg 171 (233)
T PF05496_consen 92 LAAILTNLKEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFG 171 (233)
T ss_dssp HHHHHHT--TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSS
T ss_pred HHHHHHhcCCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcc
Confidence 222222 245688889997 4556666666554331 11 223346776544444321 2
Q ss_pred ceEEcCCCCHHHHHHHHhhhc
Q 040354 145 KIYQMQELVHADALKLFSECA 165 (172)
Q Consensus 145 ~~~~l~~l~~~~~~~lf~~~a 165 (172)
-..+++.-+.+|-.++..+.|
T Consensus 172 i~~~l~~Y~~~el~~Iv~r~a 192 (233)
T PF05496_consen 172 IVLRLEFYSEEELAKIVKRSA 192 (233)
T ss_dssp EEEE----THHHHHHHHHHCC
T ss_pred eecchhcCCHHHHHHHHHHHH
Confidence 245799999999888877554
No 16
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.17 E-value=4.2e-10 Score=95.98 Aligned_cols=133 Identities=19% Similarity=0.356 Sum_probs=85.1
Q ss_pred CccccccchHH---HHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCcCcc--c-------HHHHHHHh
Q 040354 27 NHLVGIESRTE---EIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITRRFEEFPNI--G-------LNFQSKRL 94 (172)
Q Consensus 27 ~~~~Gr~~~~~---~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~--~-------~~~~~~~l 94 (172)
++++|.+..+. .+.+.+.... ...+.|+|++|+||||||+.+++.....|...+.. . .......+
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~~---~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~~i~dir~~i~~a~~~l 104 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKADR---VGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAGVKDLRAEVDRAKERL 104 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcCC---CceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhhhhHHHHHHHHHHHHHh
Confidence 56899888774 4666665443 46789999999999999999999876665443111 1 11121222
Q ss_pred --CCCeeEEEEecCC--CHHhHHHHHhhccCCCCCcEEEEE--eCChh--HHHh-cCCCceEEcCCCCHHHHHHHHhhhc
Q 040354 95 --TRKKLLIVFDDVH--HPRQIDCLIECLDWFASASRIIII--SRDKQ--ALIS-CGVNKIYQMQELVHADALKLFSECA 165 (172)
Q Consensus 95 --~~~~~LlvlDdv~--~~~~~~~l~~~~~~~~~~s~iiiT--tr~~~--~~~~-~~~~~~~~l~~l~~~~~~~lf~~~a 165 (172)
.+++.+|+|||++ +..+++.+...+. .++.++++ |.+.. +... .....++++++++.++...++.+.+
T Consensus 105 ~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l 181 (725)
T PRK13341 105 ERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRAL 181 (725)
T ss_pred hhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHH
Confidence 1356799999997 4556666665543 35545553 33321 1111 1234579999999999999887643
No 17
>PRK08727 hypothetical protein; Validated
Probab=99.14 E-value=8.2e-10 Score=82.64 Aligned_cols=139 Identities=13% Similarity=0.072 Sum_probs=80.6
Q ss_pred CCCccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc--Ccc--cHHHHHHHhC--CCe
Q 040354 25 NNNHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITRRFEEF--PNI--GLNFQSKRLT--RKK 98 (172)
Q Consensus 25 ~~~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~--~~~--~~~~~~~~l~--~~~ 98 (172)
.++.++|-...+..+..+..... ...+.|+|++|+|||+|++.+++....+.... -++ ....+...+. .+.
T Consensus 18 f~~f~~~~~n~~~~~~~~~~~~~---~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~l~~~ 94 (233)
T PRK08727 18 FDSYIAAPDGLLAQLQALAAGQS---SDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAGRLRDALEALEGR 94 (233)
T ss_pred hhhccCCcHHHHHHHHHHHhccC---CCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhhhHHHHHHHHhcC
Confidence 34444444444554444443221 35699999999999999999998854432111 001 1111112211 133
Q ss_pred eEEEEecCCCH---HhH-HHHHhhccC-CCCCcEEEEEeCCh---------hHHHhcCCCceEEcCCCCHHHHHHHHhhh
Q 040354 99 LLIVFDDVHHP---RQI-DCLIECLDW-FASASRIIIISRDK---------QALISCGVNKIYQMQELVHADALKLFSEC 164 (172)
Q Consensus 99 ~LlvlDdv~~~---~~~-~~l~~~~~~-~~~~s~iiiTtr~~---------~~~~~~~~~~~~~l~~l~~~~~~~lf~~~ 164 (172)
-+||+||++.. ..| ..++..+.. ...+..+|+|++.. ++...+.....+++++++.++...++.+.
T Consensus 95 dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~ 174 (233)
T PRK08727 95 SLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRER 174 (233)
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHH
Confidence 58999999632 222 223332222 12456699998742 33334444568999999999999999876
Q ss_pred cC
Q 040354 165 AF 166 (172)
Q Consensus 165 a~ 166 (172)
+.
T Consensus 175 a~ 176 (233)
T PRK08727 175 AQ 176 (233)
T ss_pred HH
Confidence 53
No 18
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.14 E-value=5.4e-10 Score=88.83 Aligned_cols=143 Identities=15% Similarity=0.209 Sum_probs=89.5
Q ss_pred CCCccccccchHHHHHHHhcCC--C--------CCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCcC--cc-------
Q 040354 25 NNNHLVGIESRTEEIESVLGVG--S--------TMNICKLGISGSGDIGKITIAGAIFNKITRRFEEFP--NI------- 85 (172)
Q Consensus 25 ~~~~~~Gr~~~~~~l~~~l~~~--~--------~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~--~~------- 85 (172)
..+++.|+++.++.+.+.+... . -..++-+.|+|++|+|||++|+.+++.....|.... ++
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~g~ 199 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIGE 199 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhhhH
Confidence 3356889999999998866411 0 011466999999999999999999998666554331 11
Q ss_pred cHHHHHHHh----CCCeeEEEEecCCCHH----------------hHHHHHhhccCC--CCCcEEEEEeCChhHHH-hc-
Q 040354 86 GLNFQSKRL----TRKKLLIVFDDVHHPR----------------QIDCLIECLDWF--ASASRIIIISRDKQALI-SC- 141 (172)
Q Consensus 86 ~~~~~~~~l----~~~~~LlvlDdv~~~~----------------~~~~l~~~~~~~--~~~s~iiiTtr~~~~~~-~~- 141 (172)
....++..+ ...+.+|+||+++... .+..+...+... ..+.+||.||....... .+
T Consensus 200 ~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~ 279 (364)
T TIGR01242 200 GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALL 279 (364)
T ss_pred HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhc
Confidence 111222222 2356899999997431 123333333222 24567888877543221 11
Q ss_pred ---CCCceEEcCCCCHHHHHHHHhhhcCC
Q 040354 142 ---GVNKIYQMQELVHADALKLFSECAFE 167 (172)
Q Consensus 142 ---~~~~~~~l~~l~~~~~~~lf~~~a~~ 167 (172)
.....+++...+.++..++|..++.+
T Consensus 280 r~grfd~~i~v~~P~~~~r~~Il~~~~~~ 308 (364)
T TIGR01242 280 RPGRFDRIIEVPLPDFEGRLEILKIHTRK 308 (364)
T ss_pred CcccCceEEEeCCcCHHHHHHHHHHHHhc
Confidence 12457899999999999999877644
No 19
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.13 E-value=8.5e-10 Score=87.50 Aligned_cols=142 Identities=14% Similarity=0.104 Sum_probs=85.1
Q ss_pred CCCCccccccchHHHHHHHhcCC-CCCCeeEEEEEcCCCchHHHHHHHHHHHHhcc-------ccCc-------Cc---c
Q 040354 24 ENNNHLVGIESRTEEIESVLGVG-STMNICKLGISGSGDIGKITIAGAIFNKITRR-------FEEF-------PN---I 85 (172)
Q Consensus 24 ~~~~~~~Gr~~~~~~l~~~l~~~-~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~-------f~~~-------~~---~ 85 (172)
..++.++||+++++.|..+|... .+.....+.|+|++|+|||++++.+++++... |... .+ +
T Consensus 12 ~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~ 91 (365)
T TIGR02928 12 YVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQV 91 (365)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHH
Confidence 45678999999999999988631 11224689999999999999999999874321 1111 00 0
Q ss_pred ---c---------------------HHHHHHHhC--CCeeEEEEecCCCHH-----hHHHHHhhc-cCCC--CCcEEEEE
Q 040354 86 ---G---------------------LNFQSKRLT--RKKLLIVFDDVHHPR-----QIDCLIECL-DWFA--SASRIIII 131 (172)
Q Consensus 86 ---~---------------------~~~~~~~l~--~~~~LlvlDdv~~~~-----~~~~l~~~~-~~~~--~~s~iiiT 131 (172)
+ ...+.+.+. +++.+||||+++... .+..+.... .... ....+|.+
T Consensus 92 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i 171 (365)
T TIGR02928 92 LVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGI 171 (365)
T ss_pred HHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEE
Confidence 0 111222232 356899999998651 122222111 0111 22345555
Q ss_pred eCChhHHHhcC-------CCceEEcCCCCHHHHHHHHhhhc
Q 040354 132 SRDKQALISCG-------VNKIYQMQELVHADALKLFSECA 165 (172)
Q Consensus 132 tr~~~~~~~~~-------~~~~~~l~~l~~~~~~~lf~~~a 165 (172)
+........+. ....+.+++.+.++..+++..++
T Consensus 172 ~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~ 212 (365)
T TIGR02928 172 SNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRA 212 (365)
T ss_pred ECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHH
Confidence 55443322211 12468899999999999887764
No 20
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.13 E-value=3.6e-10 Score=88.59 Aligned_cols=140 Identities=15% Similarity=0.170 Sum_probs=85.5
Q ss_pred CCccccccchHHHHHHHhcC--CCCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc--Ccc-cHHHHHHHhC--CCe
Q 040354 26 NNHLVGIESRTEEIESVLGV--GSTMNICKLGISGSGDIGKITIAGAIFNKITRRFEEF--PNI-GLNFQSKRLT--RKK 98 (172)
Q Consensus 26 ~~~~~Gr~~~~~~l~~~l~~--~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~--~~~-~~~~~~~~l~--~~~ 98 (172)
-..|+|++..++.+..++.. ........+.|+|++|+|||+||+.+++.....+... ... ....+...+. ...
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 103 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEKPGDLAAILTNLEEG 103 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccChHHHHHHHHhcccC
Confidence 36799999999999887762 1122256889999999999999999999865543222 111 1222222222 245
Q ss_pred eEEEEecCCCH--HhHHHHHhhccCC-------------------CCCcEEEEEeCChhHHHhc--CCCceEEcCCCCHH
Q 040354 99 LLIVFDDVHHP--RQIDCLIECLDWF-------------------ASASRIIIISRDKQALISC--GVNKIYQMQELVHA 155 (172)
Q Consensus 99 ~LlvlDdv~~~--~~~~~l~~~~~~~-------------------~~~s~iiiTtr~~~~~~~~--~~~~~~~l~~l~~~ 155 (172)
.+|++|+++.. ...+.+...+... .+.+-|..|++...+...+ .....+++.+++.+
T Consensus 104 ~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~ 183 (328)
T PRK00080 104 DVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVE 183 (328)
T ss_pred CEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHHhcCeeeecCCCCHH
Confidence 68999999743 2223332222111 1223344566644333221 12346899999999
Q ss_pred HHHHHHhhhc
Q 040354 156 DALKLFSECA 165 (172)
Q Consensus 156 ~~~~lf~~~a 165 (172)
+..+++.+.+
T Consensus 184 e~~~il~~~~ 193 (328)
T PRK00080 184 ELEKIVKRSA 193 (328)
T ss_pred HHHHHHHHHH
Confidence 9999988664
No 21
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.13 E-value=5.5e-10 Score=82.80 Aligned_cols=141 Identities=16% Similarity=0.212 Sum_probs=79.5
Q ss_pred CCCCccccccchHH-HHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc-------Ccc----------
Q 040354 24 ENNNHLVGIESRTE-EIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITRRFEEF-------PNI---------- 85 (172)
Q Consensus 24 ~~~~~~~Gr~~~~~-~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~-------~~~---------- 85 (172)
..++.++|-..+.. .....+....+.....+.|||+.|+|||+|++++++.+....... +++
T Consensus 6 tFdnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~ 85 (219)
T PF00308_consen 6 TFDNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRD 85 (219)
T ss_dssp SCCCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHT
T ss_pred ccccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHc
Confidence 45666778544422 333333322222245789999999999999999999855432211 111
Q ss_pred -cHHHHHHHhCCCeeEEEEecCCCH---HhH-HHHHhhccCC-CCCcEEEEEeCCh---------hHHHhcCCCceEEcC
Q 040354 86 -GLNFQSKRLTRKKLLIVFDDVHHP---RQI-DCLIECLDWF-ASASRIIIISRDK---------QALISCGVNKIYQMQ 150 (172)
Q Consensus 86 -~~~~~~~~l~~~~~LlvlDdv~~~---~~~-~~l~~~~~~~-~~~s~iiiTtr~~---------~~~~~~~~~~~~~l~ 150 (172)
....+...+. .-=+|++||++.. ..| +.+...+... ..|.++|+|+... .+...+...-++++.
T Consensus 86 ~~~~~~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~ 164 (219)
T PF00308_consen 86 GEIEEFKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQ 164 (219)
T ss_dssp TSHHHHHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE-
T ss_pred ccchhhhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcC
Confidence 1223333344 2347889999633 222 2333333221 2567899999542 344555577789999
Q ss_pred CCCHHHHHHHHhhhc
Q 040354 151 ELVHADALKLFSECA 165 (172)
Q Consensus 151 ~l~~~~~~~lf~~~a 165 (172)
++++++...++.++|
T Consensus 165 ~pd~~~r~~il~~~a 179 (219)
T PF00308_consen 165 PPDDEDRRRILQKKA 179 (219)
T ss_dssp ---HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999988765
No 22
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.13 E-value=6.9e-10 Score=82.32 Aligned_cols=129 Identities=13% Similarity=0.132 Sum_probs=76.7
Q ss_pred ccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccC---c--Ccc--cHHHHHHHhCCCeeEEEEe
Q 040354 32 IESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITRRFEE---F--PNI--GLNFQSKRLTRKKLLIVFD 104 (172)
Q Consensus 32 r~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~---~--~~~--~~~~~~~~l~~~~~LlvlD 104 (172)
.+..++.+.+++.... ...+.|+|++|+|||+||+.++++....... . .++ ....+...+.. .-+||+|
T Consensus 22 ~~~~~~~l~~~~~~~~---~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~lLvID 97 (226)
T TIGR03420 22 NAELLAALRQLAAGKG---DRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQADPEVLEGLEQ-ADLVCLD 97 (226)
T ss_pred cHHHHHHHHHHHhcCC---CCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhHHHHHhhccc-CCEEEEe
Confidence 4446777777765322 4789999999999999999999884322111 0 111 00112222322 3489999
Q ss_pred cCCCHH---h-HHHHHhhccCC-CCCcEEEEEeCChh---------HHHhcCCCceEEcCCCCHHHHHHHHhhh
Q 040354 105 DVHHPR---Q-IDCLIECLDWF-ASASRIIIISRDKQ---------ALISCGVNKIYQMQELVHADALKLFSEC 164 (172)
Q Consensus 105 dv~~~~---~-~~~l~~~~~~~-~~~s~iiiTtr~~~---------~~~~~~~~~~~~l~~l~~~~~~~lf~~~ 164 (172)
|++... . ...+...+... ..+.++|+|++... +...+.....+++++++.++...++...
T Consensus 98 di~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~ 171 (226)
T TIGR03420 98 DVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSR 171 (226)
T ss_pred ChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHH
Confidence 997442 2 33343333221 23347888887432 2222323457899999999988888754
No 23
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.12 E-value=1.8e-09 Score=80.91 Aligned_cols=138 Identities=12% Similarity=0.162 Sum_probs=81.2
Q ss_pred CCCCcccccc-chHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhcc-----ccCcCcc--cHHHHHHHhC
Q 040354 24 ENNNHLVGIE-SRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITRR-----FEEFPNI--GLNFQSKRLT 95 (172)
Q Consensus 24 ~~~~~~~Gr~-~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~-----f~~~~~~--~~~~~~~~l~ 95 (172)
..++.++|-+ ..+..+.++..... .+.+.|+|++|+|||+|++.+++....+ |-..+.. ....+.+.+.
T Consensus 20 ~fd~f~~~~n~~a~~~l~~~~~~~~---~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~ 96 (235)
T PRK08084 20 TFASFYPGDNDSLLAALQNALRQEH---SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWFVPEVLEGME 96 (235)
T ss_pred CccccccCccHHHHHHHHHHHhCCC---CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhhhHHHHHHhh
Confidence 4455565733 23444444443322 3689999999999999999999885432 1110111 1112222222
Q ss_pred CCeeEEEEecCCCH---HhHH-HHHhhccCC-CCC-cEEEEEeCCh---------hHHHhcCCCceEEcCCCCHHHHHHH
Q 040354 96 RKKLLIVFDDVHHP---RQID-CLIECLDWF-ASA-SRIIIISRDK---------QALISCGVNKIYQMQELVHADALKL 160 (172)
Q Consensus 96 ~~~~LlvlDdv~~~---~~~~-~l~~~~~~~-~~~-s~iiiTtr~~---------~~~~~~~~~~~~~l~~l~~~~~~~l 160 (172)
. --+|++||++.. .+|+ .++..+... ..| .++|+||+.. ++...+.+..++++.++++++-.++
T Consensus 97 ~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~ 175 (235)
T PRK08084 97 Q-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQA 175 (235)
T ss_pred h-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHH
Confidence 2 247899999642 3333 222222211 133 4689988753 4455556677899999999999998
Q ss_pred Hhhhc
Q 040354 161 FSECA 165 (172)
Q Consensus 161 f~~~a 165 (172)
+.+++
T Consensus 176 l~~~a 180 (235)
T PRK08084 176 LQLRA 180 (235)
T ss_pred HHHHH
Confidence 87754
No 24
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.11 E-value=1.9e-09 Score=91.28 Aligned_cols=136 Identities=15% Similarity=0.281 Sum_probs=94.0
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhc-c--------------------ccCc---
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITR-R--------------------FEEF--- 82 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~-~--------------------f~~~--- 82 (172)
++++|.+..++.|.+++..+.- ...+.++|+.|+||||+|+.+.+.+.. . |...
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gRL--~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEI 93 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGRL--HHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEM 93 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCCC--CeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEe
Confidence 6799999999999999986553 367789999999999999999887421 1 0000
Q ss_pred ---CcccHHHHHHHhC--------CCeeEEEEecCCCH--HhHHHHHhhccCCCCCcEEEEEeCChhHH-Hh-cCCCceE
Q 040354 83 ---PNIGLNFQSKRLT--------RKKLLIVFDDVHHP--RQIDCLIECLDWFASASRIIIISRDKQAL-IS-CGVNKIY 147 (172)
Q Consensus 83 ---~~~~~~~~~~~l~--------~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~s~iiiTtr~~~~~-~~-~~~~~~~ 147 (172)
++...+.+++.+. ++.-++|||+++.. ..++.|+..+.......++|++|.+..-. .. ......+
T Consensus 94 DAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f 173 (830)
T PRK07003 94 DAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQF 173 (830)
T ss_pred cccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEE
Confidence 1112233333322 34458899999854 55888888877666678888877765422 22 2344679
Q ss_pred EcCCCCHHHHHHHHhhh
Q 040354 148 QMQELVHADALKLFSEC 164 (172)
Q Consensus 148 ~l~~l~~~~~~~lf~~~ 164 (172)
++++++.++..+.+.+.
T Consensus 174 ~Fk~Ls~eeIv~~L~~I 190 (830)
T PRK07003 174 NLKQMPAGHIVSHLERI 190 (830)
T ss_pred ecCCcCHHHHHHHHHHH
Confidence 99999999988877653
No 25
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.09 E-value=5.6e-09 Score=83.02 Aligned_cols=135 Identities=14% Similarity=0.219 Sum_probs=91.2
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhcc--c---cC-----------------c--
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITRR--F---EE-----------------F-- 82 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~--f---~~-----------------~-- 82 (172)
+.++|.+..++.+.+.+..+.- ...+.++|++|+||||+|+.+++.+... . .+ .
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~~--~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~ 93 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGRI--HHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEI 93 (363)
T ss_pred hhccChHHHHHHHHHHHHcCCC--CeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEe
Confidence 6789999999999998875542 4678999999999999999999885311 0 00 0
Q ss_pred ---CcccHHHHHHHh--------CCCeeEEEEecCCCH--HhHHHHHhhccCCCCCcEEEEEeCCh-hHHHhc-CCCceE
Q 040354 83 ---PNIGLNFQSKRL--------TRKKLLIVFDDVHHP--RQIDCLIECLDWFASASRIIIISRDK-QALISC-GVNKIY 147 (172)
Q Consensus 83 ---~~~~~~~~~~~l--------~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~s~iiiTtr~~-~~~~~~-~~~~~~ 147 (172)
.....+.+++.+ .++.-++|+|+++.. ..++.++..+......+++|++|.+. .+...+ +....+
T Consensus 94 ~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SRc~~~ 173 (363)
T PRK14961 94 DAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCLQF 173 (363)
T ss_pred cccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhhceEE
Confidence 001122233222 124569999999854 35777887776655667777766543 333232 334679
Q ss_pred EcCCCCHHHHHHHHhh
Q 040354 148 QMQELVHADALKLFSE 163 (172)
Q Consensus 148 ~l~~l~~~~~~~lf~~ 163 (172)
++.+++.++..+.+.+
T Consensus 174 ~~~~l~~~el~~~L~~ 189 (363)
T PRK14961 174 KLKIISEEKIFNFLKY 189 (363)
T ss_pred eCCCCCHHHHHHHHHH
Confidence 9999999998877665
No 26
>PRK05642 DNA replication initiation factor; Validated
Probab=99.09 E-value=2.6e-09 Score=79.97 Aligned_cols=141 Identities=13% Similarity=0.173 Sum_probs=80.7
Q ss_pred CCCCccccccchHHHHH-HHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhcc-ccCc----Ccc--cHHHHHHHhC
Q 040354 24 ENNNHLVGIESRTEEIE-SVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITRR-FEEF----PNI--GLNFQSKRLT 95 (172)
Q Consensus 24 ~~~~~~~Gr~~~~~~l~-~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~-f~~~----~~~--~~~~~~~~l~ 95 (172)
..++.++|......... ++...........+.|||++|+|||+|++.+++....+ .... +++ ....+.+.+.
T Consensus 17 tfdnF~~~~~~~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~ 96 (234)
T PRK05642 17 TFANYYPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRGPELLDNLE 96 (234)
T ss_pred cccccCcCChHHHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhhHHHHHhhh
Confidence 45555667544433332 23222111113678999999999999999999875432 1110 111 1122233333
Q ss_pred CCeeEEEEecCCC---HHhHH-HHHhhccCC-CCCcEEEEEeCCh---------hHHHhcCCCceEEcCCCCHHHHHHHH
Q 040354 96 RKKLLIVFDDVHH---PRQID-CLIECLDWF-ASASRIIIISRDK---------QALISCGVNKIYQMQELVHADALKLF 161 (172)
Q Consensus 96 ~~~~LlvlDdv~~---~~~~~-~l~~~~~~~-~~~s~iiiTtr~~---------~~~~~~~~~~~~~l~~l~~~~~~~lf 161 (172)
+-. +|++||+.. ...|. .++..+... ..|..+|+|+... .+...+....+++++++++++...++
T Consensus 97 ~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il 175 (234)
T PRK05642 97 QYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRAL 175 (234)
T ss_pred hCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHH
Confidence 332 678999962 23443 244444322 2466788888643 23333345568999999999999988
Q ss_pred hhhc
Q 040354 162 SECA 165 (172)
Q Consensus 162 ~~~a 165 (172)
.+++
T Consensus 176 ~~ka 179 (234)
T PRK05642 176 QLRA 179 (234)
T ss_pred HHHH
Confidence 8554
No 27
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.08 E-value=3.5e-09 Score=86.56 Aligned_cols=145 Identities=17% Similarity=0.204 Sum_probs=91.7
Q ss_pred HhccccCCCCCCCccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhc-c---cc----------
Q 040354 15 DWLDDTFQTENNNHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITR-R---FE---------- 80 (172)
Q Consensus 15 ~~~~~~~~~~~~~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~-~---f~---------- 80 (172)
.+..+... ++++|.+...+.|...+..+.- ...+.++|++|+||||+|+.+++.+.. + +.
T Consensus 6 ~kyRP~~~----~divGq~~i~~~L~~~i~~~~l--~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~ 79 (472)
T PRK14962 6 RKYRPKTF----SEVVGQDHVKKLIINALKKNSI--SHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRS 79 (472)
T ss_pred HHHCCCCH----HHccCcHHHHHHHHHHHHcCCC--CeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHH
Confidence 44444444 7799999888888887775542 367899999999999999999887422 1 00
Q ss_pred --------Cc-----CcccHHHHHH---H-----hCCCeeEEEEecCCCH--HhHHHHHhhccCCCCCcEEEEEeCC-hh
Q 040354 81 --------EF-----PNIGLNFQSK---R-----LTRKKLLIVFDDVHHP--RQIDCLIECLDWFASASRIIIISRD-KQ 136 (172)
Q Consensus 81 --------~~-----~~~~~~~~~~---~-----l~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~s~iiiTtr~-~~ 136 (172)
.. .+...+.+++ . ..+++-++|+|+++.. ...+.++..+........+|++|.+ ..
T Consensus 80 i~~g~~~dv~el~aa~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~k 159 (472)
T PRK14962 80 IDEGTFMDVIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEK 159 (472)
T ss_pred HhcCCCCccEEEeCcccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHh
Confidence 00 0111222222 1 1234569999999754 4566777676654444555545443 33
Q ss_pred HHHhc-CCCceEEcCCCCHHHHHHHHhhhc
Q 040354 137 ALISC-GVNKIYQMQELVHADALKLFSECA 165 (172)
Q Consensus 137 ~~~~~-~~~~~~~l~~l~~~~~~~lf~~~a 165 (172)
+...+ .....+++.+++.++....+.+.+
T Consensus 160 l~~~L~SR~~vv~f~~l~~~el~~~L~~i~ 189 (472)
T PRK14962 160 VPPTIISRCQVIEFRNISDELIIKRLQEVA 189 (472)
T ss_pred hhHHHhcCcEEEEECCccHHHHHHHHHHHH
Confidence 33322 345689999999999888776653
No 28
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.07 E-value=4.1e-09 Score=88.26 Aligned_cols=136 Identities=18% Similarity=0.259 Sum_probs=93.3
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhc-c--------------------ccCc---
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITR-R--------------------FEEF--- 82 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~-~--------------------f~~~--- 82 (172)
+.++|.+...+.|.+++..+.- ...+.++|++|+||||+|+.+++.+.. + |...
T Consensus 15 ddVIGQe~vv~~L~~aI~~grl--~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEI 92 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGRL--HHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEI 92 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC--CeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEe
Confidence 6799999999999999986543 378899999999999999999887421 1 0000
Q ss_pred ---CcccHHHHHHHh--------CCCeeEEEEecCCC--HHhHHHHHhhccCCCCCcEEEEEeCChh-HHHh-cCCCceE
Q 040354 83 ---PNIGLNFQSKRL--------TRKKLLIVFDDVHH--PRQIDCLIECLDWFASASRIIIISRDKQ-ALIS-CGVNKIY 147 (172)
Q Consensus 83 ---~~~~~~~~~~~l--------~~~~~LlvlDdv~~--~~~~~~l~~~~~~~~~~s~iiiTtr~~~-~~~~-~~~~~~~ 147 (172)
++...+.+++.+ .++.-++|+|+++. ....+.++..+.......++|++|.+.. +... ......+
T Consensus 93 DAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq~f 172 (702)
T PRK14960 93 DAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQF 172 (702)
T ss_pred cccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhhee
Confidence 011233333332 23456899999974 4567788877766556677887776543 2212 2344679
Q ss_pred EcCCCCHHHHHHHHhhh
Q 040354 148 QMQELVHADALKLFSEC 164 (172)
Q Consensus 148 ~l~~l~~~~~~~lf~~~ 164 (172)
++.+++.++....+.+.
T Consensus 173 eFkpLs~eEI~k~L~~I 189 (702)
T PRK14960 173 TLRPLAVDEITKHLGAI 189 (702)
T ss_pred eccCCCHHHHHHHHHHH
Confidence 99999999888776543
No 29
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.06 E-value=2.8e-09 Score=91.68 Aligned_cols=135 Identities=11% Similarity=0.167 Sum_probs=93.2
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhcc-c-c---Cc-------------------
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITRR-F-E---EF------------------- 82 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~-f-~---~~------------------- 82 (172)
..++|.+..++.|.+++..+.- ...+.++|++|+||||+|+.+++.+... . . +.
T Consensus 16 ddIIGQe~Iv~~LknaI~~~rl--~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEi 93 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQRL--HHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEV 93 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCCC--CeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEe
Confidence 6799999999999998876542 3677899999999999999999984321 1 0 00
Q ss_pred --C-cccHHHHHHHh--------CCCeeEEEEecCC--CHHhHHHHHhhccCCCCCcEEEEEeCC-hhHHHh-cCCCceE
Q 040354 83 --P-NIGLNFQSKRL--------TRKKLLIVFDDVH--HPRQIDCLIECLDWFASASRIIIISRD-KQALIS-CGVNKIY 147 (172)
Q Consensus 83 --~-~~~~~~~~~~l--------~~~~~LlvlDdv~--~~~~~~~l~~~~~~~~~~s~iiiTtr~-~~~~~~-~~~~~~~ 147 (172)
. ....+.+++.. .++.-++|||+++ +...++.|+..+.......++|++|.+ ..+... ......|
T Consensus 94 dAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRCq~f 173 (944)
T PRK14949 94 DAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQF 173 (944)
T ss_pred ccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhheEE
Confidence 0 11122233222 2456799999997 456788888888765566766665544 333323 2344689
Q ss_pred EcCCCCHHHHHHHHhh
Q 040354 148 QMQELVHADALKLFSE 163 (172)
Q Consensus 148 ~l~~l~~~~~~~lf~~ 163 (172)
++.+++.++..+.+.+
T Consensus 174 ~fkpLs~eEI~~~L~~ 189 (944)
T PRK14949 174 NLKSLTQDEIGTQLNH 189 (944)
T ss_pred eCCCCCHHHHHHHHHH
Confidence 9999999999887765
No 30
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.05 E-value=4.5e-09 Score=90.42 Aligned_cols=132 Identities=16% Similarity=0.143 Sum_probs=83.5
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhcc-cc---------CcC--cc---------
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITRR-FE---------EFP--NI--------- 85 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~-f~---------~~~--~~--------- 85 (172)
+.++||+++++.+.+.|.... ...+.++|++|+|||++|+.++..+... .+ ..+ .+
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~---~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~ 258 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK---KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGD 258 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC---CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccch
Confidence 579999999999999887654 3467899999999999999999985321 11 000 11
Q ss_pred cHHHHHHHh----CCCeeEEEEecCCCH-----------HhHHHHHhhccCCCCC-cEEEEEeCChhHHHh-------cC
Q 040354 86 GLNFQSKRL----TRKKLLIVFDDVHHP-----------RQIDCLIECLDWFASA-SRIIIISRDKQALIS-------CG 142 (172)
Q Consensus 86 ~~~~~~~~l----~~~~~LlvlDdv~~~-----------~~~~~l~~~~~~~~~~-s~iiiTtr~~~~~~~-------~~ 142 (172)
....++..+ ...+.+|++|+++.. +..+.+.+.+. .| -++|-+|....+... ..
T Consensus 259 ~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~---~g~i~~IgaTt~~e~~~~~~~d~al~r 335 (731)
T TIGR02639 259 FEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS---SGKLRCIGSTTYEEYKNHFEKDRALSR 335 (731)
T ss_pred HHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh---CCCeEEEEecCHHHHHHHhhhhHHHHH
Confidence 113444444 235789999999632 22344444443 33 344444443222111 11
Q ss_pred CCceEEcCCCCHHHHHHHHhhh
Q 040354 143 VNKIYQMQELVHADALKLFSEC 164 (172)
Q Consensus 143 ~~~~~~l~~l~~~~~~~lf~~~ 164 (172)
....+++++++.++..+++...
T Consensus 336 Rf~~i~v~~p~~~~~~~il~~~ 357 (731)
T TIGR02639 336 RFQKIDVGEPSIEETVKILKGL 357 (731)
T ss_pred hCceEEeCCCCHHHHHHHHHHH
Confidence 3357899999999999988743
No 31
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.04 E-value=7.4e-09 Score=85.32 Aligned_cols=137 Identities=15% Similarity=0.164 Sum_probs=91.5
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhc--ccc--Cc--------------------
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITR--RFE--EF-------------------- 82 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~--~f~--~~-------------------- 82 (172)
++++|.+...+.|..++....- ...+.++|++|+||||+|+.+++.+.. .+. +.
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~l--~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~ 91 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGRL--GHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEID 91 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCCC--CeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEec
Confidence 6789999999999988886542 367899999999999999999988531 111 00
Q ss_pred --CcccHHHHH---HHh-----CCCeeEEEEecCCCH--HhHHHHHhhccCCCCCcEEEEEeCC-hhHHHhc-CCCceEE
Q 040354 83 --PNIGLNFQS---KRL-----TRKKLLIVFDDVHHP--RQIDCLIECLDWFASASRIIIISRD-KQALISC-GVNKIYQ 148 (172)
Q Consensus 83 --~~~~~~~~~---~~l-----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~s~iiiTtr~-~~~~~~~-~~~~~~~ 148 (172)
.+...+.++ ..+ .+++-++|+|+++.. ..++.++..+......+.+|+++.. ..+...+ .....++
T Consensus 92 ~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~~~~ 171 (504)
T PRK14963 92 AASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFR 171 (504)
T ss_pred ccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceEEEE
Confidence 111222222 222 235568999999743 5577888777655556666655543 3332222 2345899
Q ss_pred cCCCCHHHHHHHHhhhc
Q 040354 149 MQELVHADALKLFSECA 165 (172)
Q Consensus 149 l~~l~~~~~~~lf~~~a 165 (172)
+.+++.++...++.+.+
T Consensus 172 f~~ls~~el~~~L~~i~ 188 (504)
T PRK14963 172 FRRLTEEEIAGKLRRLL 188 (504)
T ss_pred ecCCCHHHHHHHHHHHH
Confidence 99999999998887643
No 32
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.01 E-value=8.4e-09 Score=80.88 Aligned_cols=135 Identities=13% Similarity=0.223 Sum_probs=86.0
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhcc-ccC----c--Ccc--------------
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITRR-FEE----F--PNI-------------- 85 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~-f~~----~--~~~-------------- 85 (172)
+.++|++..++.+.+++.... .+.+.++|++|+||||+|+.+++.+... +.. . .+.
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~---~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 91 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPN---LPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVEDPRF 91 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCC---CceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhcCcch
Confidence 668899999999999887543 3468899999999999999999885322 111 0 000
Q ss_pred -------------cHHHHHHHh---------CCCeeEEEEecCCCH--HhHHHHHhhccCCCCCcEEEEEeCChh-HHHh
Q 040354 86 -------------GLNFQSKRL---------TRKKLLIVFDDVHHP--RQIDCLIECLDWFASASRIIIISRDKQ-ALIS 140 (172)
Q Consensus 86 -------------~~~~~~~~l---------~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~s~iiiTtr~~~-~~~~ 140 (172)
....++..+ ...+-+||+||++.. .....+...+......+++|+++.... +...
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~ 171 (337)
T PRK12402 92 AHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPP 171 (337)
T ss_pred hhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchh
Confidence 011122111 123458999999744 334455555544445677887775432 2222
Q ss_pred c-CCCceEEcCCCCHHHHHHHHhhh
Q 040354 141 C-GVNKIYQMQELVHADALKLFSEC 164 (172)
Q Consensus 141 ~-~~~~~~~l~~l~~~~~~~lf~~~ 164 (172)
+ .....+++.+++.++...++.+.
T Consensus 172 L~sr~~~v~~~~~~~~~~~~~l~~~ 196 (337)
T PRK12402 172 IRSRCLPLFFRAPTDDELVDVLESI 196 (337)
T ss_pred hcCCceEEEecCCCHHHHHHHHHHH
Confidence 2 23457889999999988877664
No 33
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.00 E-value=4.5e-09 Score=71.80 Aligned_cols=104 Identities=21% Similarity=0.239 Sum_probs=63.8
Q ss_pred ccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhc---cccCc--Ccc-----cHH-------H--H
Q 040354 30 VGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITR---RFEEF--PNI-----GLN-------F--Q 90 (172)
Q Consensus 30 ~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~---~f~~~--~~~-----~~~-------~--~ 90 (172)
.|++..+..+...+.... .+.+.|+|++|+|||++++.+++.+.. .+-.. ... ... . .
T Consensus 1 ~~~~~~~~~i~~~~~~~~---~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (151)
T cd00009 1 VGQEEAIEALREALELPP---PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLF 77 (151)
T ss_pred CchHHHHHHHHHHHhCCC---CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHH
Confidence 367888888888877543 468999999999999999999998632 11111 111 010 0 1
Q ss_pred HHHhCCCeeEEEEecCCCH--HhHHHHHhhccCC------CCCcEEEEEeCChh
Q 040354 91 SKRLTRKKLLIVFDDVHHP--RQIDCLIECLDWF------ASASRIIIISRDKQ 136 (172)
Q Consensus 91 ~~~l~~~~~LlvlDdv~~~--~~~~~l~~~~~~~------~~~s~iiiTtr~~~ 136 (172)
......++.+|++||++.. .....+...+... ..+..+|+++....
T Consensus 78 ~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 78 ELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred HhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 1122345789999999854 2222333222222 35677888887653
No 34
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.00 E-value=1.3e-08 Score=84.44 Aligned_cols=135 Identities=13% Similarity=0.216 Sum_probs=90.4
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhcc---------------------ccCc---
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITRR---------------------FEEF--- 82 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~---------------------f~~~--- 82 (172)
+.++|.+..++.|...+....- ...+.++|++|+||||+|+.+++.+... |...
T Consensus 16 ~diiGq~~~v~~L~~~i~~~rl--~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dliei 93 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQKV--HHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEI 93 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC--CeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEe
Confidence 6789999999999998876542 3678899999999999999999874321 0000
Q ss_pred ---CcccHHHHHHH--------hCCCeeEEEEecCC--CHHhHHHHHhhccCCCCCcEEEEEeCCh-hHHHh-cCCCceE
Q 040354 83 ---PNIGLNFQSKR--------LTRKKLLIVFDDVH--HPRQIDCLIECLDWFASASRIIIISRDK-QALIS-CGVNKIY 147 (172)
Q Consensus 83 ---~~~~~~~~~~~--------l~~~~~LlvlDdv~--~~~~~~~l~~~~~~~~~~s~iiiTtr~~-~~~~~-~~~~~~~ 147 (172)
.....+.++.. ..+++-++|+|+++ +...++.|+..+......+.+|++|-+. .+... ......+
T Consensus 94 daas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc~~~ 173 (546)
T PRK14957 94 DAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQL 173 (546)
T ss_pred ecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHheeeE
Confidence 00112222222 23456699999997 4456888888887655666666555443 33322 2345689
Q ss_pred EcCCCCHHHHHHHHhh
Q 040354 148 QMQELVHADALKLFSE 163 (172)
Q Consensus 148 ~l~~l~~~~~~~lf~~ 163 (172)
++.+++.++....+.+
T Consensus 174 ~f~~Ls~~eI~~~L~~ 189 (546)
T PRK14957 174 HLKHISQADIKDQLKI 189 (546)
T ss_pred EeCCCCHHHHHHHHHH
Confidence 9999999988776664
No 35
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.00 E-value=1.4e-08 Score=85.31 Aligned_cols=136 Identities=13% Similarity=0.223 Sum_probs=92.1
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhc-c--------c-cCc--------------
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITR-R--------F-EEF-------------- 82 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~-~--------f-~~~-------------- 82 (172)
++++|.+..++.|.+++....- ...+.++|+.|+||||+|+.+.+.+.. . . .+.
T Consensus 16 ~dviGQe~vv~~L~~~l~~~rl--~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~ 93 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQRL--HHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRFV 93 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC--CeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCCC
Confidence 6789999999999999886653 378899999999999999999877421 0 0 000
Q ss_pred --------CcccHHHHHHHhC--------CCeeEEEEecCC--CHHhHHHHHhhccCCCCCcEEEEEeCC-hhHHHh-cC
Q 040354 83 --------PNIGLNFQSKRLT--------RKKLLIVFDDVH--HPRQIDCLIECLDWFASASRIIIISRD-KQALIS-CG 142 (172)
Q Consensus 83 --------~~~~~~~~~~~l~--------~~~~LlvlDdv~--~~~~~~~l~~~~~~~~~~s~iiiTtr~-~~~~~~-~~ 142 (172)
.+...+.+++.+. ++.-++|||+++ +...++.++..+..-...+++|++|.+ ..+... ..
T Consensus 94 D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlS 173 (618)
T PRK14951 94 DYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLS 173 (618)
T ss_pred ceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHH
Confidence 1113334444432 234588999997 456688888777665556666666544 333322 33
Q ss_pred CCceEEcCCCCHHHHHHHHhhh
Q 040354 143 VNKIYQMQELVHADALKLFSEC 164 (172)
Q Consensus 143 ~~~~~~l~~l~~~~~~~lf~~~ 164 (172)
....+++++++.++..+.+.+.
T Consensus 174 Rc~~~~f~~Ls~eei~~~L~~i 195 (618)
T PRK14951 174 RCLQFNLRPMAPETVLEHLTQV 195 (618)
T ss_pred hceeeecCCCCHHHHHHHHHHH
Confidence 4568999999999888777643
No 36
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.99 E-value=1.1e-08 Score=84.22 Aligned_cols=137 Identities=15% Similarity=0.188 Sum_probs=92.5
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhcc--------ccCc----------------
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITRR--------FEEF---------------- 82 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~--------f~~~---------------- 82 (172)
.+++|.+..++.|...+..+.- ...+.++|++|+||||+|+.+++.+... +...
T Consensus 21 ~dliGq~~vv~~L~~ai~~~ri--~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~D 98 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDRL--AGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPD 98 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC--CceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCc
Confidence 6789999999998887765542 3689999999999999999999984221 0100
Q ss_pred -------CcccHHHHHHHh--------CCCeeEEEEecCCC--HHhHHHHHhhccCCCCCcEEEE-EeCChhHHHhc-CC
Q 040354 83 -------PNIGLNFQSKRL--------TRKKLLIVFDDVHH--PRQIDCLIECLDWFASASRIII-ISRDKQALISC-GV 143 (172)
Q Consensus 83 -------~~~~~~~~~~~l--------~~~~~LlvlDdv~~--~~~~~~l~~~~~~~~~~s~iii-Ttr~~~~~~~~-~~ 143 (172)
++...+.++..+ .+++-++|+|+++. ...++.|...+....+.+.+|+ |++...+...+ ..
T Consensus 99 v~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SR 178 (507)
T PRK06645 99 IIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISR 178 (507)
T ss_pred EEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhc
Confidence 111233333332 24566899999985 4558888877775555666555 44444444433 34
Q ss_pred CceEEcCCCCHHHHHHHHhhhc
Q 040354 144 NKIYQMQELVHADALKLFSECA 165 (172)
Q Consensus 144 ~~~~~l~~l~~~~~~~lf~~~a 165 (172)
...+++.+++.++....+.+.+
T Consensus 179 c~~~ef~~ls~~el~~~L~~i~ 200 (507)
T PRK06645 179 CQRYDLRRLSFEEIFKLLEYIT 200 (507)
T ss_pred ceEEEccCCCHHHHHHHHHHHH
Confidence 4579999999999988876553
No 37
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.98 E-value=1.4e-08 Score=79.07 Aligned_cols=135 Identities=16% Similarity=0.160 Sum_probs=84.4
Q ss_pred CCccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc---C-cc--cHHHHHHHh-----
Q 040354 26 NNHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITRRFEEF---P-NI--GLNFQSKRL----- 94 (172)
Q Consensus 26 ~~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~---~-~~--~~~~~~~~l----- 94 (172)
-+.++|.+...+.+..++..+.. ...+.++|++|+||||+|+.+++.....+... . .. ....+....
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~~~--~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~~~~~~i~~~l~~~~~~~~~ 97 (316)
T PHA02544 20 IDECILPAADKETFKSIVKKGRI--PNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSDCRIDFVRNRLTRFASTVSL 97 (316)
T ss_pred HHHhcCcHHHHHHHHHHHhcCCC--CeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCcccHHHHHHHHHHHHHhhcc
Confidence 37789999999999999885432 46778899999999999999998754332211 1 11 112222221
Q ss_pred CCCeeEEEEecCCCH---HhHHHHHhhccCCCCCcEEEEEeCChh-HHHhc-CCCceEEcCCCCHHHHHHHHh
Q 040354 95 TRKKLLIVFDDVHHP---RQIDCLIECLDWFASASRIIIISRDKQ-ALISC-GVNKIYQMQELVHADALKLFS 162 (172)
Q Consensus 95 ~~~~~LlvlDdv~~~---~~~~~l~~~~~~~~~~s~iiiTtr~~~-~~~~~-~~~~~~~l~~l~~~~~~~lf~ 162 (172)
...+-++|+|+++.. +....+...+.....++++|+|+.... +...+ .....+.+...+.++..+++.
T Consensus 98 ~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~~~~il~ 170 (316)
T PHA02544 98 TGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQIEMMK 170 (316)
T ss_pred cCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEeCCCCHHHHHHHHH
Confidence 134568999999744 223444444544456778888886543 11111 233467777777777665543
No 38
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.98 E-value=6e-09 Score=87.15 Aligned_cols=135 Identities=13% Similarity=0.214 Sum_probs=92.3
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhc-----cc-----cCc--------------
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITR-----RF-----EEF-------------- 82 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~-----~f-----~~~-------------- 82 (172)
++++|.+..++.|.+++..+.- ...+.++|+.|+||||+|+.+.+.+.. .. .+.
T Consensus 16 ddVIGQe~vv~~L~~al~~gRL--pHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hp 93 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQRL--HHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFV 93 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCCC--ceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCC
Confidence 6799999999999999986653 367899999999999999999988432 00 000
Q ss_pred --------CcccHHHHHHHh--------CCCeeEEEEecCC--CHHhHHHHHhhccCCCCCcEEEEEeCC-hhHHHhc-C
Q 040354 83 --------PNIGLNFQSKRL--------TRKKLLIVFDDVH--HPRQIDCLIECLDWFASASRIIIISRD-KQALISC-G 142 (172)
Q Consensus 83 --------~~~~~~~~~~~l--------~~~~~LlvlDdv~--~~~~~~~l~~~~~~~~~~s~iiiTtr~-~~~~~~~-~ 142 (172)
++...+.+++.+ .++.-++|||+++ +...++.|+..+..-...+++|++|.+ ..+...+ .
T Consensus 94 DviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrS 173 (700)
T PRK12323 94 DYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLS 173 (700)
T ss_pred cceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHH
Confidence 111233333332 2345699999997 446688888888765566666655554 3343332 2
Q ss_pred CCceEEcCCCCHHHHHHHHhh
Q 040354 143 VNKIYQMQELVHADALKLFSE 163 (172)
Q Consensus 143 ~~~~~~l~~l~~~~~~~lf~~ 163 (172)
....+++..++.++..+.+.+
T Consensus 174 RCq~f~f~~ls~eei~~~L~~ 194 (700)
T PRK12323 174 RCLQFNLKQMPPGHIVSHLDA 194 (700)
T ss_pred HHHhcccCCCChHHHHHHHHH
Confidence 345789999999988887664
No 39
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.98 E-value=8.8e-09 Score=86.82 Aligned_cols=135 Identities=16% Similarity=0.295 Sum_probs=89.2
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhcc---------------------c-cCc--
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITRR---------------------F-EEF-- 82 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~---------------------f-~~~-- 82 (172)
++++|.+..++.|.+++....- ...+.++|+.|+||||+|+.+.+.+... | +..
T Consensus 16 ddIIGQe~vv~~L~~ai~~~rl--~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEi 93 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGRL--HHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEI 93 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCCC--CeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEE
Confidence 6799999999999999886543 3688999999999999999998873211 0 000
Q ss_pred ---CcccHHHHHHHhC--------CCeeEEEEecCCCH--HhHHHHHhhccCCCCCcEEEEEeCChh-HHHh-cCCCceE
Q 040354 83 ---PNIGLNFQSKRLT--------RKKLLIVFDDVHHP--RQIDCLIECLDWFASASRIIIISRDKQ-ALIS-CGVNKIY 147 (172)
Q Consensus 83 ---~~~~~~~~~~~l~--------~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~s~iiiTtr~~~-~~~~-~~~~~~~ 147 (172)
.+...+.+++.+. ++.-++|||+++.. ...+.|+..+......+++|++|.+.. +... .+....+
T Consensus 94 daAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC~~f 173 (709)
T PRK08691 94 DAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQF 173 (709)
T ss_pred eccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHHhhh
Confidence 1112333443332 35568999999754 346777777765555667777765432 2212 1223457
Q ss_pred EcCCCCHHHHHHHHhh
Q 040354 148 QMQELVHADALKLFSE 163 (172)
Q Consensus 148 ~l~~l~~~~~~~lf~~ 163 (172)
++.+++.++....+.+
T Consensus 174 ~f~~Ls~eeI~~~L~~ 189 (709)
T PRK08691 174 VLRNMTAQQVADHLAH 189 (709)
T ss_pred hcCCCCHHHHHHHHHH
Confidence 8889999887776654
No 40
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.98 E-value=1.3e-08 Score=81.60 Aligned_cols=141 Identities=14% Similarity=0.212 Sum_probs=86.7
Q ss_pred CCccccccchHHHHHHHhcCC----------CCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc--Ccc-------c
Q 040354 26 NNHLVGIESRTEEIESVLGVG----------STMNICKLGISGSGDIGKITIAGAIFNKITRRFEEF--PNI-------G 86 (172)
Q Consensus 26 ~~~~~Gr~~~~~~l~~~l~~~----------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~--~~~-------~ 86 (172)
.+++.|+++.++.+.+.+... .-..++.+.|+|++|+|||++|+.+++.....|-.. .++ .
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g~~ 209 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIGEG 209 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhccch
Confidence 356789999999988865310 011256799999999999999999999866554433 111 1
Q ss_pred HHHHHHHh----CCCeeEEEEecCCCHH------------h----HHHHHhhccCCC--CCcEEEEEeCChhHHHh-c--
Q 040354 87 LNFQSKRL----TRKKLLIVFDDVHHPR------------Q----IDCLIECLDWFA--SASRIIIISRDKQALIS-C-- 141 (172)
Q Consensus 87 ~~~~~~~l----~~~~~LlvlDdv~~~~------------~----~~~l~~~~~~~~--~~s~iiiTtr~~~~~~~-~-- 141 (172)
...++..+ ...+.+|+||+++... . +..++..+.... .+..||.||........ +
T Consensus 210 ~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allR 289 (389)
T PRK03992 210 ARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILR 289 (389)
T ss_pred HHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcC
Confidence 12222222 3356899999997531 1 122222222111 34567777765432221 1
Q ss_pred --CCCceEEcCCCCHHHHHHHHhhhcC
Q 040354 142 --GVNKIYQMQELVHADALKLFSECAF 166 (172)
Q Consensus 142 --~~~~~~~l~~l~~~~~~~lf~~~a~ 166 (172)
.....+++++.+.++..++|..+..
T Consensus 290 pgRfd~~I~v~~P~~~~R~~Il~~~~~ 316 (389)
T PRK03992 290 PGRFDRIIEVPLPDEEGRLEILKIHTR 316 (389)
T ss_pred CccCceEEEECCCCHHHHHHHHHHHhc
Confidence 1245789999999999999887653
No 41
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.97 E-value=1.2e-08 Score=82.98 Aligned_cols=136 Identities=13% Similarity=0.168 Sum_probs=89.6
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhcc----ccCc--------------------
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITRR----FEEF-------------------- 82 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~----f~~~-------------------- 82 (172)
++++|.+..+..|..++....- ...+.++|++|+||||+|+.+++.+... +...
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~ri--~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEI 95 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGKI--GHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEI 95 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCCC--CeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceee
Confidence 6789999999999998886542 3578999999999999999999884321 0000
Q ss_pred ---CcccHHHHHHH--------hCCCeeEEEEecCC--CHHhHHHHHhhccCCCCCcEEEEEeCC-hhHHHhc-CCCceE
Q 040354 83 ---PNIGLNFQSKR--------LTRKKLLIVFDDVH--HPRQIDCLIECLDWFASASRIIIISRD-KQALISC-GVNKIY 147 (172)
Q Consensus 83 ---~~~~~~~~~~~--------l~~~~~LlvlDdv~--~~~~~~~l~~~~~~~~~~s~iiiTtr~-~~~~~~~-~~~~~~ 147 (172)
.+...+.+++. ..++.-++|+|+++ +...++.|+..+........+|++|.+ ..+...+ .....|
T Consensus 96 daas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq~~ 175 (484)
T PRK14956 96 DAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDF 175 (484)
T ss_pred chhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhhee
Confidence 01112222221 12345699999997 456688888777654445555544443 3333332 334579
Q ss_pred EcCCCCHHHHHHHHhhh
Q 040354 148 QMQELVHADALKLFSEC 164 (172)
Q Consensus 148 ~l~~l~~~~~~~lf~~~ 164 (172)
.+.+++.++..+.+.+.
T Consensus 176 ~f~~ls~~~i~~~L~~i 192 (484)
T PRK14956 176 IFKKVPLSVLQDYSEKL 192 (484)
T ss_pred eecCCCHHHHHHHHHHH
Confidence 99999998887776654
No 42
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.97 E-value=1.4e-08 Score=78.90 Aligned_cols=136 Identities=15% Similarity=0.174 Sum_probs=87.1
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhc-cccCc-------Ccc----cHHHHHHHh
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITR-RFEEF-------PNI----GLNFQSKRL 94 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~-~f~~~-------~~~----~~~~~~~~l 94 (172)
++++|++..++.+..++.... .+.+.|+|++|+||||+|+.+++.+.. .+... +.. ....+....
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~---~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~ 93 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKN---MPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERGIDVIRNKIKEFA 93 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCC---CCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccchHHHHHHHHHHH
Confidence 568899999999999987543 345799999999999999999998432 22111 111 112222222
Q ss_pred C------CCeeEEEEecCCCH--HhHHHHHhhccCCCCCcEEEEEeCCh-hHHHhc-CCCceEEcCCCCHHHHHHHHhhh
Q 040354 95 T------RKKLLIVFDDVHHP--RQIDCLIECLDWFASASRIIIISRDK-QALISC-GVNKIYQMQELVHADALKLFSEC 164 (172)
Q Consensus 95 ~------~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~s~iiiTtr~~-~~~~~~-~~~~~~~l~~l~~~~~~~lf~~~ 164 (172)
. ..+-++++|+++.. .....+...+....+.+.+|+++... .+...+ .....+++.+++.++...++.+.
T Consensus 94 ~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~ 173 (319)
T PRK00440 94 RTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYI 173 (319)
T ss_pred hcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHH
Confidence 1 23568999999743 34556666665555667777776432 222111 23346899999999987777654
Q ss_pred c
Q 040354 165 A 165 (172)
Q Consensus 165 a 165 (172)
+
T Consensus 174 ~ 174 (319)
T PRK00440 174 A 174 (319)
T ss_pred H
Confidence 3
No 43
>PRK04195 replication factor C large subunit; Provisional
Probab=98.97 E-value=5e-09 Score=86.22 Aligned_cols=137 Identities=16% Similarity=0.222 Sum_probs=85.3
Q ss_pred CCccccccchHHHHHHHhcCC-CCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc--Ccc-cHHHHHH----H----
Q 040354 26 NNHLVGIESRTEEIESVLGVG-STMNICKLGISGSGDIGKITIAGAIFNKITRRFEEF--PNI-GLNFQSK----R---- 93 (172)
Q Consensus 26 ~~~~~Gr~~~~~~l~~~l~~~-~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~--~~~-~~~~~~~----~---- 93 (172)
-+.++|++...+.+.+|+..- .+...+.+.|+|++|+||||+|+.+++++.-.+-.. .+. ....+.. .
T Consensus 13 l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~~~i~~~i~~~~~~~ 92 (482)
T PRK04195 13 LSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTADVIERVAGEAATSG 92 (482)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccHHHHHHHHHHhhccC
Confidence 367999999999999998732 111157899999999999999999999863221111 111 1111211 1
Q ss_pred -hC-CCeeEEEEecCCCHH------hHHHHHhhccCCCCCcEEEEEeCChh-HHH-hc-CCCceEEcCCCCHHHHHHHHh
Q 040354 94 -LT-RKKLLIVFDDVHHPR------QIDCLIECLDWFASASRIIIISRDKQ-ALI-SC-GVNKIYQMQELVHADALKLFS 162 (172)
Q Consensus 94 -l~-~~~~LlvlDdv~~~~------~~~~l~~~~~~~~~~s~iiiTtr~~~-~~~-~~-~~~~~~~l~~l~~~~~~~lf~ 162 (172)
+. .++-+||||+++... .+..+...+.. ....+|+++.+.. ... .+ .....+++.+++.++....+.
T Consensus 93 sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~ 170 (482)
T PRK04195 93 SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLK 170 (482)
T ss_pred cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhHhccceEEEecCCCHHHHHHHHH
Confidence 11 256799999997542 25555555542 3344666664421 111 11 234578999999998887776
Q ss_pred hh
Q 040354 163 EC 164 (172)
Q Consensus 163 ~~ 164 (172)
+.
T Consensus 171 ~i 172 (482)
T PRK04195 171 RI 172 (482)
T ss_pred HH
Confidence 54
No 44
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.96 E-value=1.5e-08 Score=88.22 Aligned_cols=130 Identities=12% Similarity=0.128 Sum_probs=82.5
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccC-----c-------Cc------c---
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITRRFEE-----F-------PN------I--- 85 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~-----~-------~~------~--- 85 (172)
+.++||+.+++++.+.|.... ...+.|+|++|+||||+|+.++..+....-. . .. .
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~---~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge 263 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR---QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGE 263 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC---cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchH
Confidence 679999999999999887654 3466799999999999999999885322110 0 00 0
Q ss_pred cHHHHHHHhC-----CCeeEEEEecCCCH-------HhH---HHHHhhccCCCCC-cEEEEEeCChhHHHh-------cC
Q 040354 86 GLNFQSKRLT-----RKKLLIVFDDVHHP-------RQI---DCLIECLDWFASA-SRIIIISRDKQALIS-------CG 142 (172)
Q Consensus 86 ~~~~~~~~l~-----~~~~LlvlDdv~~~-------~~~---~~l~~~~~~~~~~-s~iiiTtr~~~~~~~-------~~ 142 (172)
....++..+. ..+.+|++|+++.. .+. +.+.+.+. .| -++|-+|....+... ..
T Consensus 264 ~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~---~G~l~~IgaTT~~e~~~~~~~d~AL~r 340 (852)
T TIGR03345 264 FENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALA---RGELRTIAATTWAEYKKYFEKDPALTR 340 (852)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhh---CCCeEEEEecCHHHHhhhhhccHHHHH
Confidence 1133333332 35799999999633 111 23444332 33 345555544322111 12
Q ss_pred CCceEEcCCCCHHHHHHHHh
Q 040354 143 VNKIYQMQELVHADALKLFS 162 (172)
Q Consensus 143 ~~~~~~l~~l~~~~~~~lf~ 162 (172)
....+.+++++.++...++.
T Consensus 341 Rf~~i~v~eps~~~~~~iL~ 360 (852)
T TIGR03345 341 RFQVVKVEEPDEETAIRMLR 360 (852)
T ss_pred hCeEEEeCCCCHHHHHHHHH
Confidence 33589999999999999864
No 45
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.96 E-value=1.9e-09 Score=84.07 Aligned_cols=131 Identities=16% Similarity=0.302 Sum_probs=81.4
Q ss_pred CccccccchHH---HHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhcc---ccCc-------Ccc--cHHHHH
Q 040354 27 NHLVGIESRTE---EIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITRR---FEEF-------PNI--GLNFQS 91 (172)
Q Consensus 27 ~~~~Gr~~~~~---~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~---f~~~-------~~~--~~~~~~ 91 (172)
++.||.+..+. .|.+++.+.. .+.+.+||++|+||||||+.+.+.-..+ |-.. .++ +.+.-+
T Consensus 138 ~dyvGQ~hlv~q~gllrs~ieq~~---ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~dvR~ife~aq 214 (554)
T KOG2028|consen 138 DDYVGQSHLVGQDGLLRSLIEQNR---IPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTNDVRDIFEQAQ 214 (554)
T ss_pred HHhcchhhhcCcchHHHHHHHcCC---CCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchHHHHHHHHHHH
Confidence 44555543332 2333444333 7899999999999999999999874443 3222 111 122222
Q ss_pred H--HhCCCeeEEEEecCC--CHHhHHHHHhhccCCCCCcEEEE--EeCChhHHH---hcCCCceEEcCCCCHHHHHHHHh
Q 040354 92 K--RLTRKKLLIVFDDVH--HPRQIDCLIECLDWFASASRIII--ISRDKQALI---SCGVNKIYQMQELVHADALKLFS 162 (172)
Q Consensus 92 ~--~l~~~~~LlvlDdv~--~~~~~~~l~~~~~~~~~~s~iii--Ttr~~~~~~---~~~~~~~~~l~~l~~~~~~~lf~ 162 (172)
+ .+..++.+|++|+|. +..|.+.|++... +|+-++| ||.+....- .+....++-|++|..++...++.
T Consensus 215 ~~~~l~krkTilFiDEiHRFNksQQD~fLP~VE---~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~ 291 (554)
T KOG2028|consen 215 NEKSLTKRKTILFIDEIHRFNKSQQDTFLPHVE---NGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILM 291 (554)
T ss_pred HHHhhhcceeEEEeHHhhhhhhhhhhcccceec---cCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHH
Confidence 2 234578999999996 5556666654443 6765555 666654321 23445688899999998887776
Q ss_pred h
Q 040354 163 E 163 (172)
Q Consensus 163 ~ 163 (172)
+
T Consensus 292 r 292 (554)
T KOG2028|consen 292 R 292 (554)
T ss_pred H
Confidence 5
No 46
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.95 E-value=1.1e-08 Score=76.07 Aligned_cols=136 Identities=13% Similarity=0.104 Sum_probs=73.5
Q ss_pred CCCCccccccchH-HHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhc-cccCc--Ccc-cHHHHHHHhCCCe
Q 040354 24 ENNNHLVGIESRT-EEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITR-RFEEF--PNI-GLNFQSKRLTRKK 98 (172)
Q Consensus 24 ~~~~~~~Gr~~~~-~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~-~f~~~--~~~-~~~~~~~~l~~~~ 98 (172)
..++.+.|.+... ..+.++..... . ...+.|+|++|+|||+||+.++++... ..... +.. ....+ ... ...
T Consensus 16 ~~d~f~~~~~~~~~~~l~~~~~~~~-~-~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~~-~~~-~~~ 91 (227)
T PRK08903 16 TFDNFVAGENAELVARLRELAAGPV-A-DRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLAF-DFD-PEA 91 (227)
T ss_pred hhcccccCCcHHHHHHHHHHHhccC-C-CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHHH-hhc-ccC
Confidence 4444444654443 44455544222 2 468899999999999999999998422 21111 000 11111 111 234
Q ss_pred eEEEEecCCCH--HhHHHHHhhccCCC-CCc-EEEEEeCChh--------HHHhcCCCceEEcCCCCHHHHHHHHhh
Q 040354 99 LLIVFDDVHHP--RQIDCLIECLDWFA-SAS-RIIIISRDKQ--------ALISCGVNKIYQMQELVHADALKLFSE 163 (172)
Q Consensus 99 ~LlvlDdv~~~--~~~~~l~~~~~~~~-~~s-~iiiTtr~~~--------~~~~~~~~~~~~l~~l~~~~~~~lf~~ 163 (172)
-+|++||++.. .+...+...+.... .+. .+|+|++... +...+.....++++++++++-..++.+
T Consensus 92 ~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~ 168 (227)
T PRK08903 92 ELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKA 168 (227)
T ss_pred CEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHH
Confidence 57899999643 22233333332211 333 3666665432 111223346789999999877666654
No 47
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.94 E-value=2.5e-08 Score=86.30 Aligned_cols=135 Identities=13% Similarity=0.215 Sum_probs=92.2
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHh-cc-----------------------ccCc
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKIT-RR-----------------------FEEF 82 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~-~~-----------------------f~~~ 82 (172)
..++|.+..++.|.+++....- ...+.++|+.|+||||+|+.+.+.+. .+ ++..
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~ri--~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~ 92 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGRI--NHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVT 92 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCCC--CceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEE
Confidence 6789999999999999886543 36789999999999999999998853 11 0000
Q ss_pred -----CcccHHHHHHH--------hCCCeeEEEEecCCC--HHhHHHHHhhccCCCCCcEEEEEeCC-hhHHHhc-CCCc
Q 040354 83 -----PNIGLNFQSKR--------LTRKKLLIVFDDVHH--PRQIDCLIECLDWFASASRIIIISRD-KQALISC-GVNK 145 (172)
Q Consensus 83 -----~~~~~~~~~~~--------l~~~~~LlvlDdv~~--~~~~~~l~~~~~~~~~~s~iiiTtr~-~~~~~~~-~~~~ 145 (172)
.+...+.+++. ..++.-++|||+++. ...++.|+..+......+.+|++|.+ ..+...+ ....
T Consensus 93 eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSRc~ 172 (824)
T PRK07764 93 EIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTH 172 (824)
T ss_pred EecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhhee
Confidence 11123333332 223455889999974 45688888888766666666655543 3444433 3456
Q ss_pred eEEcCCCCHHHHHHHHhh
Q 040354 146 IYQMQELVHADALKLFSE 163 (172)
Q Consensus 146 ~~~l~~l~~~~~~~lf~~ 163 (172)
.|++..++.++..+++.+
T Consensus 173 ~v~F~~l~~~~l~~~L~~ 190 (824)
T PRK07764 173 HYPFRLVPPEVMRGYLER 190 (824)
T ss_pred EEEeeCCCHHHHHHHHHH
Confidence 899999999988777665
No 48
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.94 E-value=1.6e-08 Score=85.16 Aligned_cols=135 Identities=15% Similarity=0.189 Sum_probs=92.2
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhc-cc----cCc-------------------
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITR-RF----EEF------------------- 82 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~-~f----~~~------------------- 82 (172)
++++|.+..++.|.+.+..+.- ...+.++|+.|+||||+|+.+++.+.. .. .+.
T Consensus 16 ~divGQe~vv~~L~~~l~~~rl--~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~iei 93 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGRL--HHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEI 93 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC--CeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceee
Confidence 7799999999999998876542 366889999999999999999988422 10 000
Q ss_pred ---CcccHHHHHHHh--------CCCeeEEEEecCC--CHHhHHHHHhhccCCCCCcEEEEEeCCh-hHHHh-cCCCceE
Q 040354 83 ---PNIGLNFQSKRL--------TRKKLLIVFDDVH--HPRQIDCLIECLDWFASASRIIIISRDK-QALIS-CGVNKIY 147 (172)
Q Consensus 83 ---~~~~~~~~~~~l--------~~~~~LlvlDdv~--~~~~~~~l~~~~~~~~~~s~iiiTtr~~-~~~~~-~~~~~~~ 147 (172)
+....+.+++.+ .++.-++|||+++ +...++.|+..+..-....++|++|.+. .+... ......+
T Consensus 94 daas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC~~~ 173 (647)
T PRK07994 94 DAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQF 173 (647)
T ss_pred cccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhheEe
Confidence 111222333222 2455699999997 4567888888887655666666555543 33322 2344689
Q ss_pred EcCCCCHHHHHHHHhh
Q 040354 148 QMQELVHADALKLFSE 163 (172)
Q Consensus 148 ~l~~l~~~~~~~lf~~ 163 (172)
++.+++.++....+.+
T Consensus 174 ~f~~Ls~~ei~~~L~~ 189 (647)
T PRK07994 174 HLKALDVEQIRQQLEH 189 (647)
T ss_pred eCCCCCHHHHHHHHHH
Confidence 9999999998887765
No 49
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.94 E-value=2.8e-08 Score=75.61 Aligned_cols=138 Identities=10% Similarity=0.148 Sum_probs=78.0
Q ss_pred ccccccchHHHHHH---Hhc-------C--CCCCCeeEEEEEcCCCchHHHHHHHHHHHHhcc-------ccCc--Ccc-
Q 040354 28 HLVGIESRTEEIES---VLG-------V--GSTMNICKLGISGSGDIGKITIAGAIFNKITRR-------FEEF--PNI- 85 (172)
Q Consensus 28 ~~~Gr~~~~~~l~~---~l~-------~--~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~-------f~~~--~~~- 85 (172)
.++|.++..+.|.+ |.. . ...+....+.++|++|+||||+|+.+++.+... |-.. .++
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~ 86 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLV 86 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhh
Confidence 46777766665543 321 0 111224678899999999999999998874211 1000 111
Q ss_pred ------cHHHHHHHhCC-CeeEEEEecCCCH----------HhHHHHHhhccCCCCCcEEEEEeCChhHHH------hc-
Q 040354 86 ------GLNFQSKRLTR-KKLLIVFDDVHHP----------RQIDCLIECLDWFASASRIIIISRDKQALI------SC- 141 (172)
Q Consensus 86 ------~~~~~~~~l~~-~~~LlvlDdv~~~----------~~~~~l~~~~~~~~~~s~iiiTtr~~~~~~------~~- 141 (172)
....++..+.. ...+|++|+++.. +..+.+...+........+++++....... .+
T Consensus 87 ~~~~g~~~~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~ 166 (261)
T TIGR02881 87 GEYIGHTAQKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLR 166 (261)
T ss_pred hhhccchHHHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHH
Confidence 12233333322 3458999999742 234555555544333445555554332211 11
Q ss_pred C-CCceEEcCCCCHHHHHHHHhhhc
Q 040354 142 G-VNKIYQMQELVHADALKLFSECA 165 (172)
Q Consensus 142 ~-~~~~~~l~~l~~~~~~~lf~~~a 165 (172)
. ....+++++++.++..+++.+.+
T Consensus 167 sRf~~~i~f~~~~~~el~~Il~~~~ 191 (261)
T TIGR02881 167 SRFPISIDFPDYTVEELMEIAERMV 191 (261)
T ss_pred hccceEEEECCCCHHHHHHHHHHHH
Confidence 1 23468899999999999887654
No 50
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.92 E-value=2.1e-08 Score=78.21 Aligned_cols=136 Identities=17% Similarity=0.213 Sum_probs=94.3
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhc------cccCc-------CcccHHHHHHH
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITR------RFEEF-------PNIGLNFQSKR 93 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~------~f~~~-------~~~~~~~~~~~ 93 (172)
+.++|.+...+.+.+++..+.- ...+.++|+.|+||||+|+.++..+.. +.+.. .+...+.+++.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~--~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~~ 81 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRF--SHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRNI 81 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCC--CceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHHH
Confidence 4578988888999998876543 378899999999999999999987421 11111 11123333332
Q ss_pred h--------CCCeeEEEEecCC--CHHhHHHHHhhccCCCCCcEEEEEeCChhHH-Hh-cCCCceEEcCCCCHHHHHHHH
Q 040354 94 L--------TRKKLLIVFDDVH--HPRQIDCLIECLDWFASASRIIIISRDKQAL-IS-CGVNKIYQMQELVHADALKLF 161 (172)
Q Consensus 94 l--------~~~~~LlvlDdv~--~~~~~~~l~~~~~~~~~~s~iiiTtr~~~~~-~~-~~~~~~~~l~~l~~~~~~~lf 161 (172)
. .+++-++|+|+++ +...++.++..+....+++.+|++|.+.+.. .. ......+++.+++.++...++
T Consensus 82 ~~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l 161 (313)
T PRK05564 82 IEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFI 161 (313)
T ss_pred HHHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHH
Confidence 2 2345577788775 5667999999998766788888888665422 22 234568999999999988877
Q ss_pred hhh
Q 040354 162 SEC 164 (172)
Q Consensus 162 ~~~ 164 (172)
.+.
T Consensus 162 ~~~ 164 (313)
T PRK05564 162 SYK 164 (313)
T ss_pred HHH
Confidence 554
No 51
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.92 E-value=7.3e-08 Score=76.56 Aligned_cols=140 Identities=14% Similarity=0.176 Sum_probs=98.3
Q ss_pred CCCCccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHH-hccc---c-----------C-c-----
Q 040354 24 ENNNHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKI-TRRF---E-----------E-F----- 82 (172)
Q Consensus 24 ~~~~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~-~~~f---~-----------~-~----- 82 (172)
....+++|.+...+.+.+.+..+.- ...+.++|+.|+||+|+|..+...+ +.+- . + .
T Consensus 16 ~~~~~iiGq~~~~~~L~~~~~~~rl--~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~ 93 (365)
T PRK07471 16 RETTALFGHAAAEAALLDAYRSGRL--HHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVAR 93 (365)
T ss_pred CchhhccChHHHHHHHHHHHHcCCC--CceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHH
Confidence 5567899999999999998886653 3689999999999999999999883 2220 0 0 0
Q ss_pred -------Cc------------------ccHHHHHHHh---C-----CCeeEEEEecCC--CHHhHHHHHhhccCCCCCcE
Q 040354 83 -------PN------------------IGLNFQSKRL---T-----RKKLLIVFDDVH--HPRQIDCLIECLDWFASASR 127 (172)
Q Consensus 83 -------~~------------------~~~~~~~~~l---~-----~~~~LlvlDdv~--~~~~~~~l~~~~~~~~~~s~ 127 (172)
.| +..+.+++.. . +++-++|+|+++ +....+.++..+..-..++.
T Consensus 94 ~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~ 173 (365)
T PRK07471 94 RIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSL 173 (365)
T ss_pred HHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeE
Confidence 11 1234444432 1 345789999996 55678888877776556677
Q ss_pred EEEEeCChh-HHHh-cCCCceEEcCCCCHHHHHHHHhhhc
Q 040354 128 IIIISRDKQ-ALIS-CGVNKIYQMQELVHADALKLFSECA 165 (172)
Q Consensus 128 iiiTtr~~~-~~~~-~~~~~~~~l~~l~~~~~~~lf~~~a 165 (172)
+|++|.+.. +... ......+++.+++.++..+++....
T Consensus 174 ~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~ 213 (365)
T PRK07471 174 FLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAG 213 (365)
T ss_pred EEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhc
Confidence 777777654 3222 2345689999999999999887653
No 52
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.92 E-value=2.5e-08 Score=80.21 Aligned_cols=136 Identities=14% Similarity=0.179 Sum_probs=89.8
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhc-c---------------------------
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITR-R--------------------------- 78 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~-~--------------------------- 78 (172)
+.++|.+...+.|.+++..+.- ...+.++|++|+||||+|+.+++.+.. .
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~~--~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~ 93 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGRV--GHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAG 93 (397)
T ss_pred hhccChHHHHHHHHHHHHhCCc--ceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcC
Confidence 6789999999999998886542 367889999999999999999988522 1
Q ss_pred -------ccCcCcccHHHHHH---Hh-----CCCeeEEEEecCCCH--HhHHHHHhhccCCCCCcEEEEEe-CChhHHHh
Q 040354 79 -------FEEFPNIGLNFQSK---RL-----TRKKLLIVFDDVHHP--RQIDCLIECLDWFASASRIIIIS-RDKQALIS 140 (172)
Q Consensus 79 -------f~~~~~~~~~~~~~---~l-----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~s~iiiTt-r~~~~~~~ 140 (172)
|+.......+.+++ .+ .+.+-++|+|+++.. ..++.+...+....+.+.+|+++ +...+...
T Consensus 94 ~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~t 173 (397)
T PRK14955 94 TSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPAT 173 (397)
T ss_pred CCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHH
Confidence 00000011233332 22 234568899999743 56788887877655667666555 33333333
Q ss_pred c-CCCceEEcCCCCHHHHHHHHhhh
Q 040354 141 C-GVNKIYQMQELVHADALKLFSEC 164 (172)
Q Consensus 141 ~-~~~~~~~l~~l~~~~~~~lf~~~ 164 (172)
+ .....+++.+++.++....+...
T Consensus 174 l~sR~~~v~f~~l~~~ei~~~l~~~ 198 (397)
T PRK14955 174 IASRCQRFNFKRIPLEEIQQQLQGI 198 (397)
T ss_pred HHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 2 22357889999998887766653
No 53
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.92 E-value=2.9e-08 Score=78.47 Aligned_cols=136 Identities=14% Similarity=0.220 Sum_probs=89.3
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhcc----c------------------cCc--
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITRR----F------------------EEF-- 82 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~----f------------------~~~-- 82 (172)
..++|.+..++.+.+++..+.- ...+.++|++|+||||+|+.+...+... + +..
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~~--~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~ 91 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGRI--AHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEI 91 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCCC--CeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEe
Confidence 6789999999999998875442 3688999999999999999999884311 1 110
Q ss_pred --C-cccHH---HHHHHh-----CCCeeEEEEecCCCH--HhHHHHHhhccCCCCCcEEEEEeCChh-HHHhc-CCCceE
Q 040354 83 --P-NIGLN---FQSKRL-----TRKKLLIVFDDVHHP--RQIDCLIECLDWFASASRIIIISRDKQ-ALISC-GVNKIY 147 (172)
Q Consensus 83 --~-~~~~~---~~~~~l-----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~s~iiiTtr~~~-~~~~~-~~~~~~ 147 (172)
. ....+ .+...+ .+++-++|+|+++.. ..++.+...+....+.+.+|++|.+.. +...+ .....+
T Consensus 92 ~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~ 171 (355)
T TIGR02397 92 DAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQRF 171 (355)
T ss_pred eccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHhheeEE
Confidence 0 01111 122221 234558899999744 557777777765555666667765543 23222 234578
Q ss_pred EcCCCCHHHHHHHHhhh
Q 040354 148 QMQELVHADALKLFSEC 164 (172)
Q Consensus 148 ~l~~l~~~~~~~lf~~~ 164 (172)
++.+++.++...++...
T Consensus 172 ~~~~~~~~~l~~~l~~~ 188 (355)
T TIGR02397 172 DFKRIPLEDIVERLKKI 188 (355)
T ss_pred EcCCCCHHHHHHHHHHH
Confidence 89999999888877653
No 54
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.90 E-value=3.7e-08 Score=81.40 Aligned_cols=133 Identities=13% Similarity=0.207 Sum_probs=89.3
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHH-hcc-cc-------------------Cc---
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKI-TRR-FE-------------------EF--- 82 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~-~~~-f~-------------------~~--- 82 (172)
++++|.+..++.|.+++....- ...+.++|++|+||||+|+.+++.+ +.. .. ..
T Consensus 16 ~divGq~~v~~~L~~~~~~~~l--~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~ei 93 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQYL--HHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEV 93 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCCC--CeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEE
Confidence 6799999999999999986543 3678999999999999999999874 211 10 00
Q ss_pred ---CcccHHHHHHHhC--------CCeeEEEEecCCC--HHhHHHHHhhccCCCCCcEEEEEeCCh-hHHHh-cCCCceE
Q 040354 83 ---PNIGLNFQSKRLT--------RKKLLIVFDDVHH--PRQIDCLIECLDWFASASRIIIISRDK-QALIS-CGVNKIY 147 (172)
Q Consensus 83 ---~~~~~~~~~~~l~--------~~~~LlvlDdv~~--~~~~~~l~~~~~~~~~~s~iiiTtr~~-~~~~~-~~~~~~~ 147 (172)
++...+.+++.+. ++.-++|+|+++. ...++.++..+....+.+++|++|.+. .+... ......+
T Consensus 94 daas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc~~~ 173 (509)
T PRK14958 94 DAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQF 173 (509)
T ss_pred cccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHhhhh
Confidence 1113333443332 3445899999974 466888888777655677777665443 22222 2234568
Q ss_pred EcCCCCHHHHHHHH
Q 040354 148 QMQELVHADALKLF 161 (172)
Q Consensus 148 ~l~~l~~~~~~~lf 161 (172)
++.+++.++....+
T Consensus 174 ~f~~l~~~~i~~~l 187 (509)
T PRK14958 174 HLAQLPPLQIAAHC 187 (509)
T ss_pred hcCCCCHHHHHHHH
Confidence 89999988766543
No 55
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.90 E-value=2.8e-08 Score=81.33 Aligned_cols=136 Identities=15% Similarity=0.225 Sum_probs=91.9
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhcc----------------------ccCc--
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITRR----------------------FEEF-- 82 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~----------------------f~~~-- 82 (172)
++++|.+...+.+.+.+..+.- ...+.++|++|+||||+|+.++..+.-. .+..
T Consensus 13 ~dliGQe~vv~~L~~a~~~~ri--~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~ei 90 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNKI--PQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEI 90 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC--CceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEE
Confidence 6789999999999888875542 3689999999999999999998763110 0000
Q ss_pred ---CcccHHHHHHHh--------CCCeeEEEEecCCC--HHhHHHHHhhccCCCCCcEEEEEeCC-hhHHHhc-CCCceE
Q 040354 83 ---PNIGLNFQSKRL--------TRKKLLIVFDDVHH--PRQIDCLIECLDWFASASRIIIISRD-KQALISC-GVNKIY 147 (172)
Q Consensus 83 ---~~~~~~~~~~~l--------~~~~~LlvlDdv~~--~~~~~~l~~~~~~~~~~s~iiiTtr~-~~~~~~~-~~~~~~ 147 (172)
++...+.++..+ .++.-++|+|+++. ...++.|+..+..-.+.+++|++|.+ ..+...+ .....+
T Consensus 91 daas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc~~~ 170 (491)
T PRK14964 91 DAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQRF 170 (491)
T ss_pred ecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhheee
Confidence 111333444332 23456899999974 45578888888766667776665543 3443332 345678
Q ss_pred EcCCCCHHHHHHHHhhh
Q 040354 148 QMQELVHADALKLFSEC 164 (172)
Q Consensus 148 ~l~~l~~~~~~~lf~~~ 164 (172)
++.+++.++....+.+.
T Consensus 171 ~f~~l~~~el~~~L~~i 187 (491)
T PRK14964 171 DLQKIPTDKLVEHLVDI 187 (491)
T ss_pred ecccccHHHHHHHHHHH
Confidence 99999998888777654
No 56
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.89 E-value=2.1e-08 Score=83.69 Aligned_cols=141 Identities=13% Similarity=0.141 Sum_probs=81.0
Q ss_pred CCCCccccccchHH--HHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhccc---cCc----Cccc--------
Q 040354 24 ENNNHLVGIESRTE--EIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITRRF---EEF----PNIG-------- 86 (172)
Q Consensus 24 ~~~~~~~Gr~~~~~--~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f---~~~----~~~~-------- 86 (172)
..++.++|-...+. .+..+....... ...++|||..|+|||+|++.+++.....+ ... +++.
T Consensus 286 TFDnFvvG~sN~~A~aaa~avae~~~~~-~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~ 364 (617)
T PRK14086 286 TFDTFVIGASNRFAHAAAVAVAEAPAKA-YNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIR 364 (617)
T ss_pred CHhhhcCCCccHHHHHHHHHHHhCcccc-CCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHH
Confidence 34445667655422 333333322211 34589999999999999999999854321 111 1111
Q ss_pred ---HHHHHHHhCCCeeEEEEecCCCH---HhH-HHHHhhccCC-CCCcEEEEEeCCh---------hHHHhcCCCceEEc
Q 040354 87 ---LNFQSKRLTRKKLLIVFDDVHHP---RQI-DCLIECLDWF-ASASRIIIISRDK---------QALISCGVNKIYQM 149 (172)
Q Consensus 87 ---~~~~~~~l~~~~~LlvlDdv~~~---~~~-~~l~~~~~~~-~~~s~iiiTtr~~---------~~~~~~~~~~~~~l 149 (172)
...+++.+.. --+|+|||++.. +.| +.|+..+... ..+..||+||... .+...+...-+++|
T Consensus 365 ~~~~~~f~~~y~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I 443 (617)
T PRK14086 365 DGKGDSFRRRYRE-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDV 443 (617)
T ss_pred hccHHHHHHHhhc-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEc
Confidence 1112222221 237899999632 222 2333333222 2355688888642 34444556778999
Q ss_pred CCCCHHHHHHHHhhhcC
Q 040354 150 QELVHADALKLFSECAF 166 (172)
Q Consensus 150 ~~l~~~~~~~lf~~~a~ 166 (172)
.+.+.+.-.+++.+++-
T Consensus 444 ~~PD~EtR~aIL~kka~ 460 (617)
T PRK14086 444 QPPELETRIAILRKKAV 460 (617)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999887753
No 57
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.89 E-value=8e-08 Score=76.48 Aligned_cols=136 Identities=16% Similarity=0.245 Sum_probs=87.6
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhcc--------c--cCc--C--c-ccHHHHH
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITRR--------F--EEF--P--N-IGLNFQS 91 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~--------f--~~~--~--~-~~~~~~~ 91 (172)
++++|.+...+.+.+++..+.- .+.+.++|++|+||||+|+.+.+.+... | ... + + ...+.++
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~~--~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~ 94 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNHL--AQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDIR 94 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCCC--CeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHHH
Confidence 6789999999999998875432 4689999999999999999998875321 1 111 1 1 1123332
Q ss_pred HHh--------CCCeeEEEEecCCCH--HhHHHHHhhccCCCCCcEEEEEeC-ChhHHHh-cCCCceEEcCCCCHHHHHH
Q 040354 92 KRL--------TRKKLLIVFDDVHHP--RQIDCLIECLDWFASASRIIIISR-DKQALIS-CGVNKIYQMQELVHADALK 159 (172)
Q Consensus 92 ~~l--------~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~s~iiiTtr-~~~~~~~-~~~~~~~~l~~l~~~~~~~ 159 (172)
..+ .+++-++++|+++.. ..++.+...+......+.+|+++. ...+... ......+++.+++.++...
T Consensus 95 ~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~ 174 (367)
T PRK14970 95 NLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKE 174 (367)
T ss_pred HHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEecCCccHHHHHH
Confidence 222 234568999999743 446777666654344555555553 3233222 2234578999999998887
Q ss_pred HHhhh
Q 040354 160 LFSEC 164 (172)
Q Consensus 160 lf~~~ 164 (172)
.+...
T Consensus 175 ~l~~~ 179 (367)
T PRK14970 175 HLAGI 179 (367)
T ss_pred HHHHH
Confidence 77653
No 58
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.89 E-value=4.7e-08 Score=85.15 Aligned_cols=132 Identities=15% Similarity=0.169 Sum_probs=81.4
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhcc-cc---------Cc--Ccc---------
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITRR-FE---------EF--PNI--------- 85 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~-f~---------~~--~~~--------- 85 (172)
+.++||+++++++.++|.... ...+.++|++|+|||++|+.++..+... .+ .. .++
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~---~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge 255 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT---KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGE 255 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc---cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccH
Confidence 568999999999999998654 3466799999999999999999885421 10 00 000
Q ss_pred cHHHHHHHh----CCCeeEEEEecCCCH----------HhHHHHHhhccCCCCCcEEEEEeCChhHHHh-------cCCC
Q 040354 86 GLNFQSKRL----TRKKLLIVFDDVHHP----------RQIDCLIECLDWFASASRIIIISRDKQALIS-------CGVN 144 (172)
Q Consensus 86 ~~~~~~~~l----~~~~~LlvlDdv~~~----------~~~~~l~~~~~~~~~~s~iiiTtr~~~~~~~-------~~~~ 144 (172)
....++..+ ..++.+|++|+++.. +.-+.|.+.+.. ..-++|.+|....+... ....
T Consensus 256 ~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r--g~l~~IgaTt~~ey~~~ie~D~aL~rRf 333 (821)
T CHL00095 256 FEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR--GELQCIGATTLDEYRKHIEKDPALERRF 333 (821)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC--CCcEEEEeCCHHHHHHHHhcCHHHHhcc
Confidence 122333333 346789999999522 112333333321 22345555544433211 1233
Q ss_pred ceEEcCCCCHHHHHHHHhh
Q 040354 145 KIYQMQELVHADALKLFSE 163 (172)
Q Consensus 145 ~~~~l~~l~~~~~~~lf~~ 163 (172)
..+.+...+.++...++..
T Consensus 334 ~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 334 QPVYVGEPSVEETIEILFG 352 (821)
T ss_pred eEEecCCCCHHHHHHHHHH
Confidence 4678888998888777653
No 59
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.88 E-value=2.7e-08 Score=81.25 Aligned_cols=140 Identities=14% Similarity=0.133 Sum_probs=80.1
Q ss_pred CCCCccccccch--HHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc-------Ccc---------
Q 040354 24 ENNNHLVGIESR--TEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITRRFEEF-------PNI--------- 85 (172)
Q Consensus 24 ~~~~~~~Gr~~~--~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~-------~~~--------- 85 (172)
..++.++|.... ...+..+....... ...+.|+|++|+|||+|++.+.+.+..++... .++
T Consensus 120 tfd~fv~g~~n~~a~~~~~~~~~~~~~~-~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~ 198 (450)
T PRK00149 120 TFDNFVVGKSNRLAHAAALAVAENPGKA-YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALR 198 (450)
T ss_pred cccccccCCCcHHHHHHHHHHHhCcCcc-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHH
Confidence 344456675543 23333343332222 46799999999999999999999965443211 111
Q ss_pred --cHHHHHHHhCCCeeEEEEecCCCH---H-hHHHHHhhccCC-CCCcEEEEEeCCh---------hHHHhcCCCceEEc
Q 040354 86 --GLNFQSKRLTRKKLLIVFDDVHHP---R-QIDCLIECLDWF-ASASRIIIISRDK---------QALISCGVNKIYQM 149 (172)
Q Consensus 86 --~~~~~~~~l~~~~~LlvlDdv~~~---~-~~~~l~~~~~~~-~~~s~iiiTtr~~---------~~~~~~~~~~~~~l 149 (172)
....+.+.+. +.-+|++||++.. + ..+.++..+... ..+..+|+|+... .+...+.....+++
T Consensus 199 ~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i 277 (450)
T PRK00149 199 NNTMEEFKEKYR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDI 277 (450)
T ss_pred cCcHHHHHHHHh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEe
Confidence 0112222232 2348999999632 1 123333333211 1345577777542 12233445567999
Q ss_pred CCCCHHHHHHHHhhhc
Q 040354 150 QELVHADALKLFSECA 165 (172)
Q Consensus 150 ~~l~~~~~~~lf~~~a 165 (172)
.+.+.++...++.+.+
T Consensus 278 ~~pd~~~r~~il~~~~ 293 (450)
T PRK00149 278 EPPDLETRIAILKKKA 293 (450)
T ss_pred cCCCHHHHHHHHHHHH
Confidence 9999999999988775
No 60
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.87 E-value=3.6e-08 Score=80.40 Aligned_cols=140 Identities=14% Similarity=0.199 Sum_probs=79.4
Q ss_pred CCCCccccccch--HHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhccc---cCc----Ccc---cHH---
Q 040354 24 ENNNHLVGIESR--TEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITRRF---EEF----PNI---GLN--- 88 (172)
Q Consensus 24 ~~~~~~~Gr~~~--~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f---~~~----~~~---~~~--- 88 (172)
..++.++|.... ......+....... ...+.|+|..|+|||+|++++.+.+.... ... +++ ...
T Consensus 113 tFdnFv~g~~n~~A~~aa~~~a~~~~~~-~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~ 191 (450)
T PRK14087 113 TFENFVIGSSNEQAFIAVQTVSKNPGIS-YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQ 191 (450)
T ss_pred chhcccCCCcHHHHHHHHHHHHhCcCcc-cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHH
Confidence 334456675443 22333333322211 45789999999999999999999754321 111 111 111
Q ss_pred ----H---HHHHhCCCeeEEEEecCCCH----HhHHHHHhhccCC-CCCcEEEEEeCCh---------hHHHhcCCCceE
Q 040354 89 ----F---QSKRLTRKKLLIVFDDVHHP----RQIDCLIECLDWF-ASASRIIIISRDK---------QALISCGVNKIY 147 (172)
Q Consensus 89 ----~---~~~~l~~~~~LlvlDdv~~~----~~~~~l~~~~~~~-~~~s~iiiTtr~~---------~~~~~~~~~~~~ 147 (172)
. +.+.+. ..-+||+||+... ...+.++..+... ..+..||+|+... .+...+.++-++
T Consensus 192 ~~~~~~~~~~~~~~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~ 270 (450)
T PRK14087 192 KTHKEIEQFKNEIC-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSI 270 (450)
T ss_pred HhhhHHHHHHHHhc-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCcee
Confidence 1 111122 2348899999632 2233444333322 2455688886532 233334456678
Q ss_pred EcCCCCHHHHHHHHhhhc
Q 040354 148 QMQELVHADALKLFSECA 165 (172)
Q Consensus 148 ~l~~l~~~~~~~lf~~~a 165 (172)
.+++++.++..+++.+++
T Consensus 271 ~L~~pd~e~r~~iL~~~~ 288 (450)
T PRK14087 271 AIQKLDNKTATAIIKKEI 288 (450)
T ss_pred ccCCcCHHHHHHHHHHHH
Confidence 899999999999998765
No 61
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.86 E-value=9.7e-08 Score=80.38 Aligned_cols=135 Identities=13% Similarity=0.130 Sum_probs=89.9
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhc-c-c----------c-Cc-----------
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITR-R-F----------E-EF----------- 82 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~-~-f----------~-~~----------- 82 (172)
+.++|.+..++.|.+++..+.- ...+.++|++|+||||+|+.+++.+.- . . . +.
T Consensus 16 ~eivGQe~i~~~L~~~i~~~ri--~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g 93 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDRV--GHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAG 93 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC--CeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhcc
Confidence 7789999999999998876542 367899999999999999999988421 1 0 0 00
Q ss_pred -----------CcccHHHHHHH--------hCCCeeEEEEecCCCH--HhHHHHHhhccCCCCCcEEEEEeC-ChhHHHh
Q 040354 83 -----------PNIGLNFQSKR--------LTRKKLLIVFDDVHHP--RQIDCLIECLDWFASASRIIIISR-DKQALIS 140 (172)
Q Consensus 83 -----------~~~~~~~~~~~--------l~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~s~iiiTtr-~~~~~~~ 140 (172)
.+...+.++.. +.+.+-++|+|+++.. ...+.|+..+..-.+.+.+|++|. ...+...
T Consensus 94 ~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~T 173 (620)
T PRK14954 94 TSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPAT 173 (620)
T ss_pred CCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHH
Confidence 00112333322 2234568899999754 457788877765555666555553 3344333
Q ss_pred -cCCCceEEcCCCCHHHHHHHHhh
Q 040354 141 -CGVNKIYQMQELVHADALKLFSE 163 (172)
Q Consensus 141 -~~~~~~~~l~~l~~~~~~~lf~~ 163 (172)
......+++.+++.++....+.+
T Consensus 174 I~SRc~~vef~~l~~~ei~~~L~~ 197 (620)
T PRK14954 174 IASRCQRFNFKRIPLDEIQSQLQM 197 (620)
T ss_pred HHhhceEEecCCCCHHHHHHHHHH
Confidence 23556899999999988776664
No 62
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.85 E-value=1.1e-07 Score=72.41 Aligned_cols=114 Identities=13% Similarity=0.123 Sum_probs=66.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHh-ccccC------c------------------Ccc----cHHHHHHH-----hCC
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKIT-RRFEE------F------------------PNI----GLNFQSKR-----LTR 96 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~-~~f~~------~------------------~~~----~~~~~~~~-----l~~ 96 (172)
...+.|+|++|+||||+++.+++... ..+.. . ... ....+... ..+
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~ 122 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAG 122 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 36899999999999999999998743 22110 0 000 11122222 245
Q ss_pred CeeEEEEecCCCH--HhHHHHHhhccCC---CCCcEEEEEeCChhHHHhcC----------CCceEEcCCCCHHHHHHHH
Q 040354 97 KKLLIVFDDVHHP--RQIDCLIECLDWF---ASASRIIIISRDKQALISCG----------VNKIYQMQELVHADALKLF 161 (172)
Q Consensus 97 ~~~LlvlDdv~~~--~~~~~l~~~~~~~---~~~s~iiiTtr~~~~~~~~~----------~~~~~~l~~l~~~~~~~lf 161 (172)
++.+||+||++.. ..++.+....... .....|++|.... +...+. ....+++.+++.+|..+++
T Consensus 123 ~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l 201 (269)
T TIGR03015 123 KRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREETREYI 201 (269)
T ss_pred CCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHHHHHH
Confidence 6789999999864 3455443222111 1223455665432 221111 1335789999999999987
Q ss_pred hhhc
Q 040354 162 SECA 165 (172)
Q Consensus 162 ~~~a 165 (172)
....
T Consensus 202 ~~~l 205 (269)
T TIGR03015 202 EHRL 205 (269)
T ss_pred HHHH
Confidence 6553
No 63
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.85 E-value=4.9e-08 Score=81.03 Aligned_cols=135 Identities=13% Similarity=0.190 Sum_probs=88.9
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhccc-----cCc-------------------
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITRRF-----EEF------------------- 82 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f-----~~~------------------- 82 (172)
++++|.+..++.+.+++....- ...+.++|++|+||||+|+.+...+.... .+.
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~--~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei 93 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRL--HHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEV 93 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC--CEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEe
Confidence 6789999999999998886543 36788999999999999999998842210 000
Q ss_pred ---CcccHHHHHHHh--------CCCeeEEEEecCCCH--HhHHHHHhhccCCCCCcEEEEEeCCh-hHHHh-cCCCceE
Q 040354 83 ---PNIGLNFQSKRL--------TRKKLLIVFDDVHHP--RQIDCLIECLDWFASASRIIIISRDK-QALIS-CGVNKIY 147 (172)
Q Consensus 83 ---~~~~~~~~~~~l--------~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~s~iiiTtr~~-~~~~~-~~~~~~~ 147 (172)
.+...+.+++.+ .+++-++|+|+++.. ...+.++..+......+.+|++|.+. .+... ......+
T Consensus 94 ~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SRc~~~ 173 (527)
T PRK14969 94 DAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQF 173 (527)
T ss_pred eccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHHHHHH
Confidence 011233333332 234569999999844 45778887877655566666666443 22211 1223568
Q ss_pred EcCCCCHHHHHHHHhh
Q 040354 148 QMQELVHADALKLFSE 163 (172)
Q Consensus 148 ~l~~l~~~~~~~lf~~ 163 (172)
++.+++.++..+.+.+
T Consensus 174 ~f~~l~~~~i~~~L~~ 189 (527)
T PRK14969 174 NLKQMPPPLIVSHLQH 189 (527)
T ss_pred hcCCCCHHHHHHHHHH
Confidence 8999998887766554
No 64
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.84 E-value=4.1e-08 Score=78.35 Aligned_cols=139 Identities=15% Similarity=0.151 Sum_probs=86.6
Q ss_pred CCCCccccccchHHHH--HHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc-------Ccc---------
Q 040354 24 ENNNHLVGIESRTEEI--ESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITRRFEEF-------PNI--------- 85 (172)
Q Consensus 24 ~~~~~~~Gr~~~~~~l--~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~-------~~~--------- 85 (172)
..++.++|-......- ..+-...... ...+.|||+.|.|||+|++++.+......... +++
T Consensus 85 tFdnFv~g~~N~~A~aa~~~va~~~g~~-~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~ 163 (408)
T COG0593 85 TFDNFVVGPSNRLAYAAAKAVAENPGGA-YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALR 163 (408)
T ss_pred chhheeeCCchHHHHHHHHHHHhccCCc-CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHH
Confidence 4556666755444322 2233332222 68999999999999999999999955543321 111
Q ss_pred --cHHHHHHHhCCCeeEEEEecCCCH----HhHHHHHhhccCCC-CCcEEEEEeCC---------hhHHHhcCCCceEEc
Q 040354 86 --GLNFQSKRLTRKKLLIVFDDVHHP----RQIDCLIECLDWFA-SASRIIIISRD---------KQALISCGVNKIYQM 149 (172)
Q Consensus 86 --~~~~~~~~l~~~~~LlvlDdv~~~----~~~~~l~~~~~~~~-~~s~iiiTtr~---------~~~~~~~~~~~~~~l 149 (172)
....+++.+ .--++++||++-. ..-+.++..+.... .|..||+|++. +.+...+.++-++++
T Consensus 164 ~~~~~~Fk~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I 241 (408)
T COG0593 164 DNEMEKFKEKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEI 241 (408)
T ss_pred hhhHHHHHHhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEee
Confidence 122333333 2348889999632 22334444443332 45579999853 345555667788999
Q ss_pred CCCCHHHHHHHHhhhc
Q 040354 150 QELVHADALKLFSECA 165 (172)
Q Consensus 150 ~~l~~~~~~~lf~~~a 165 (172)
.+.+.+....++.+++
T Consensus 242 ~~Pd~e~r~aiL~kka 257 (408)
T COG0593 242 EPPDDETRLAILRKKA 257 (408)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999888754
No 65
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.84 E-value=1.2e-07 Score=75.94 Aligned_cols=137 Identities=13% Similarity=0.156 Sum_probs=90.2
Q ss_pred CccccccchHHHHHHHhcCCCC-------CCeeEEEEEcCCCchHHHHHHHHHHHHhccc----cCc-------------
Q 040354 27 NHLVGIESRTEEIESVLGVGST-------MNICKLGISGSGDIGKITIAGAIFNKITRRF----EEF------------- 82 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~-------~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f----~~~------------- 82 (172)
+.++|.+..++.|.+++..... .-...+.++|++|+|||++|+.++..+.... .+.
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 4578999889999998875431 0146789999999999999999988732110 000
Q ss_pred Cc----------ccHHHHHHHhC--------CCeeEEEEecCCC--HHhHHHHHhhccCCCCCcEEEEEeCCh-hHHHhc
Q 040354 83 PN----------IGLNFQSKRLT--------RKKLLIVFDDVHH--PRQIDCLIECLDWFASASRIIIISRDK-QALISC 141 (172)
Q Consensus 83 ~~----------~~~~~~~~~l~--------~~~~LlvlDdv~~--~~~~~~l~~~~~~~~~~s~iiiTtr~~-~~~~~~ 141 (172)
.+ +..+.++.... +++-++++|+++. ....+.++..+....+++.+|++|.+. .+...+
T Consensus 85 pD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTI 164 (394)
T PRK07940 85 PDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTI 164 (394)
T ss_pred CCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHH
Confidence 11 12333333321 2345888999974 455677777776555667666666554 333332
Q ss_pred -CCCceEEcCCCCHHHHHHHHhh
Q 040354 142 -GVNKIYQMQELVHADALKLFSE 163 (172)
Q Consensus 142 -~~~~~~~l~~l~~~~~~~lf~~ 163 (172)
.....+.+.+++.++..+++.+
T Consensus 165 rSRc~~i~f~~~~~~~i~~~L~~ 187 (394)
T PRK07940 165 RSRCRHVALRTPSVEAVAEVLVR 187 (394)
T ss_pred HhhCeEEECCCCCHHHHHHHHHH
Confidence 3456899999999999888764
No 66
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.84 E-value=3.1e-08 Score=85.08 Aligned_cols=51 Identities=22% Similarity=0.123 Sum_probs=41.6
Q ss_pred CCCCccccccchHHHHHHHhcC---CCCCCeeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 24 ENNNHLVGIESRTEEIESVLGV---GSTMNICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 24 ~~~~~~~Gr~~~~~~l~~~l~~---~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
..++.+.||+++++.|...|.. .... ..++.|+|++|+|||++++.+++++
T Consensus 752 YVPD~LPhREeEIeeLasfL~paIkgsgp-nnvLYIyG~PGTGKTATVK~VLrEL 805 (1164)
T PTZ00112 752 VVPKYLPCREKEIKEVHGFLESGIKQSGS-NQILYISGMPGTGKTATVYSVIQLL 805 (1164)
T ss_pred cCCCcCCChHHHHHHHHHHHHHHHhcCCC-CceEEEECCCCCCHHHHHHHHHHHH
Confidence 4568899999999999988872 2222 3577899999999999999998874
No 67
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.83 E-value=9.5e-08 Score=79.93 Aligned_cols=135 Identities=16% Similarity=0.219 Sum_probs=91.5
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHh-cc-----------------------ccCc
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKIT-RR-----------------------FEEF 82 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~-~~-----------------------f~~~ 82 (172)
++++|.+...+.|.+++..+.- ...+.++|+.|+||||+|+.+++.+. .+ .+..
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r~--~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvi 90 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGRI--NHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVV 90 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC--CeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEE
Confidence 6789999999999999986542 36789999999999999999998743 11 0000
Q ss_pred -----CcccHHHHHHH--------hCCCeeEEEEecCC--CHHhHHHHHhhccCCCCCcEEEEEe-CChhHHHhc-CCCc
Q 040354 83 -----PNIGLNFQSKR--------LTRKKLLIVFDDVH--HPRQIDCLIECLDWFASASRIIIIS-RDKQALISC-GVNK 145 (172)
Q Consensus 83 -----~~~~~~~~~~~--------l~~~~~LlvlDdv~--~~~~~~~l~~~~~~~~~~s~iiiTt-r~~~~~~~~-~~~~ 145 (172)
.+...+.+++. ..+++-++|+|+++ +....+.|+..+......+.+|++| ....+...+ ....
T Consensus 91 eidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SRc~ 170 (584)
T PRK14952 91 ELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTH 170 (584)
T ss_pred EeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHhce
Confidence 11123333322 12455688999997 4566888888887666666655555 444444332 3456
Q ss_pred eEEcCCCCHHHHHHHHhh
Q 040354 146 IYQMQELVHADALKLFSE 163 (172)
Q Consensus 146 ~~~l~~l~~~~~~~lf~~ 163 (172)
.+++.+++.++..+++.+
T Consensus 171 ~~~F~~l~~~~i~~~L~~ 188 (584)
T PRK14952 171 HYPFRLLPPRTMRALIAR 188 (584)
T ss_pred EEEeeCCCHHHHHHHHHH
Confidence 899999999988776654
No 68
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.83 E-value=1.1e-07 Score=77.50 Aligned_cols=136 Identities=10% Similarity=0.200 Sum_probs=89.4
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhcc-----------------------ccCc-
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITRR-----------------------FEEF- 82 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~-----------------------f~~~- 82 (172)
++++|.+..++.+.+++..+.- ...+.++|++|+||||+|+.+++.+... ++..
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~i--~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~~ 94 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNRA--AHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDVLE 94 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC--ceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCceEE
Confidence 7789999999999998875542 3678899999999999999999874211 1100
Q ss_pred ----CcccHHHHHH---Hh-----CCCeeEEEEecCCCH--HhHHHHHhhccCCCCCcEEEEEeCC-hhHHHhc-CCCce
Q 040354 83 ----PNIGLNFQSK---RL-----TRKKLLIVFDDVHHP--RQIDCLIECLDWFASASRIIIISRD-KQALISC-GVNKI 146 (172)
Q Consensus 83 ----~~~~~~~~~~---~l-----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~s~iiiTtr~-~~~~~~~-~~~~~ 146 (172)
.+...+.++. .+ .+.+-++|+|+++.. ...+.|...+......+.+|++|.+ ..+...+ .....
T Consensus 95 i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~sRc~~ 174 (451)
T PRK06305 95 IDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQK 174 (451)
T ss_pred eeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHHhceE
Confidence 1111223322 11 245678899999743 4567777777655556666666643 3333222 24457
Q ss_pred EEcCCCCHHHHHHHHhhh
Q 040354 147 YQMQELVHADALKLFSEC 164 (172)
Q Consensus 147 ~~l~~l~~~~~~~lf~~~ 164 (172)
+++.+++.++....+.+.
T Consensus 175 v~f~~l~~~el~~~L~~~ 192 (451)
T PRK06305 175 MHLKRIPEETIIDKLALI 192 (451)
T ss_pred EeCCCCCHHHHHHHHHHH
Confidence 899999999988776653
No 69
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.83 E-value=1.2e-07 Score=79.57 Aligned_cols=136 Identities=13% Similarity=0.226 Sum_probs=92.1
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhccc---------cCc--------------C
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITRRF---------EEF--------------P 83 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f---------~~~--------------~ 83 (172)
.+++|.+..++.|.+++..+.- ...+.++|+.|+||||+|+.+++.+.... +.+ .
T Consensus 24 ~dliGq~~~v~~L~~~~~~gri--~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~ 101 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGRI--AQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHV 101 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC--CceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCCC
Confidence 6789999999999998886543 36889999999999999999999842111 000 1
Q ss_pred c---------ccHHHHHHHh--------CCCeeEEEEecCCC--HHhHHHHHhhccCCCCCcEEEEEe-CChhHHHhc-C
Q 040354 84 N---------IGLNFQSKRL--------TRKKLLIVFDDVHH--PRQIDCLIECLDWFASASRIIIIS-RDKQALISC-G 142 (172)
Q Consensus 84 ~---------~~~~~~~~~l--------~~~~~LlvlDdv~~--~~~~~~l~~~~~~~~~~s~iiiTt-r~~~~~~~~-~ 142 (172)
+ ...+.+++.+ .+++-++|+|+++. ....+.|+..+..-.+.+++|++| ....+...+ .
T Consensus 102 Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI~S 181 (598)
T PRK09111 102 DVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLS 181 (598)
T ss_pred ceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHHh
Confidence 1 1233444332 23456899999974 455788887776655677766655 333333332 2
Q ss_pred CCceEEcCCCCHHHHHHHHhhh
Q 040354 143 VNKIYQMQELVHADALKLFSEC 164 (172)
Q Consensus 143 ~~~~~~l~~l~~~~~~~lf~~~ 164 (172)
....+++.+++.++....+.+.
T Consensus 182 Rcq~~~f~~l~~~el~~~L~~i 203 (598)
T PRK09111 182 RCQRFDLRRIEADVLAAHLSRI 203 (598)
T ss_pred heeEEEecCCCHHHHHHHHHHH
Confidence 4467899999999888777654
No 70
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.83 E-value=6.5e-08 Score=80.71 Aligned_cols=135 Identities=16% Similarity=0.191 Sum_probs=89.0
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHh-ccc----cCc-------------------
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKIT-RRF----EEF------------------- 82 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~-~~f----~~~------------------- 82 (172)
..++|++..++.+.+++....- ...+.++|++|+||||+|+.+++.+. .+. .+.
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~rl--~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieI 93 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNKL--THAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVEL 93 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC--CceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEEe
Confidence 6789999999999998875542 36899999999999999999998742 110 000
Q ss_pred ---CcccHHHHHHHh--------CCCeeEEEEecCCC--HHhHHHHHhhccCCCCCcEEEEEeCC-hhHHHh-cCCCceE
Q 040354 83 ---PNIGLNFQSKRL--------TRKKLLIVFDDVHH--PRQIDCLIECLDWFASASRIIIISRD-KQALIS-CGVNKIY 147 (172)
Q Consensus 83 ---~~~~~~~~~~~l--------~~~~~LlvlDdv~~--~~~~~~l~~~~~~~~~~s~iiiTtr~-~~~~~~-~~~~~~~ 147 (172)
.....+.++... .+++-++|+|+++. ...++.|+..+......+.+|++|.. ..+... ......+
T Consensus 94 daas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SRcq~i 173 (605)
T PRK05896 94 DAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQRY 173 (605)
T ss_pred ccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhhhhhc
Confidence 111223333222 12344799999974 45677888777654455655555533 333322 2344578
Q ss_pred EcCCCCHHHHHHHHhh
Q 040354 148 QMQELVHADALKLFSE 163 (172)
Q Consensus 148 ~l~~l~~~~~~~lf~~ 163 (172)
++.+++.++....+..
T Consensus 174 eF~~Ls~~eL~~~L~~ 189 (605)
T PRK05896 174 NFKKLNNSELQELLKS 189 (605)
T ss_pred ccCCCCHHHHHHHHHH
Confidence 9999999988877765
No 71
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.82 E-value=3.4e-08 Score=66.79 Aligned_cols=82 Identities=20% Similarity=0.247 Sum_probs=50.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhccccCc------Ccc-------cHHHHHHHhCCC-eeEEEEecCCCH--H-------
Q 040354 54 LGISGSGDIGKITIAGAIFNKITRRFEEF------PNI-------GLNFQSKRLTRK-KLLIVFDDVHHP--R------- 110 (172)
Q Consensus 54 i~I~G~~GiGKTtLa~~~~~~~~~~f~~~------~~~-------~~~~~~~~l~~~-~~LlvlDdv~~~--~------- 110 (172)
+.|+|++|+|||++|+.+++....+|-.. ... +...+...-... +.+|+|||++.. .
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~ 80 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSS 80 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccccccccc
Confidence 57999999999999999999976544222 111 233333332334 799999999632 1
Q ss_pred ----hHHHHHhhccCCCC---CcEEEEEeCCh
Q 040354 111 ----QIDCLIECLDWFAS---ASRIIIISRDK 135 (172)
Q Consensus 111 ----~~~~l~~~~~~~~~---~s~iiiTtr~~ 135 (172)
....+...+..... +..+|.||...
T Consensus 81 ~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~ 112 (132)
T PF00004_consen 81 FEQRLLNQLLSLLDNPSSKNSRVIVIATTNSP 112 (132)
T ss_dssp HHHHHHHHHHHHHHTTTTTSSSEEEEEEESSG
T ss_pred ccccccceeeecccccccccccceeEEeeCCh
Confidence 13445444443332 35667777653
No 72
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.81 E-value=1.3e-07 Score=79.27 Aligned_cols=136 Identities=13% Similarity=0.185 Sum_probs=89.5
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhcc-----ccCc-------------------
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITRR-----FEEF------------------- 82 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~-----f~~~------------------- 82 (172)
++++|.+...+.|.+.+....- ...+.++|++|+||||+|+.+++.+... ..+.
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~ri--~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eI 93 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENRV--APAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEI 93 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCCC--CceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEE
Confidence 6789998888888888875542 3688899999999999999999884321 0000
Q ss_pred ---CcccHHHHHH---Hh-----CCCeeEEEEecCCC--HHhHHHHHhhccCCCCCcEEEEEeCC-hhHHHhc-CCCceE
Q 040354 83 ---PNIGLNFQSK---RL-----TRKKLLIVFDDVHH--PRQIDCLIECLDWFASASRIIIISRD-KQALISC-GVNKIY 147 (172)
Q Consensus 83 ---~~~~~~~~~~---~l-----~~~~~LlvlDdv~~--~~~~~~l~~~~~~~~~~s~iiiTtr~-~~~~~~~-~~~~~~ 147 (172)
.+...+.++. .+ .+++-++|+|+++. ...++.|+..+........+|++|.+ ..+...+ .....+
T Consensus 94 d~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRcq~i 173 (624)
T PRK14959 94 DGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHF 173 (624)
T ss_pred ecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhhhcc
Confidence 0111223332 21 24556899999974 45677787777654455556665554 3333332 234578
Q ss_pred EcCCCCHHHHHHHHhhh
Q 040354 148 QMQELVHADALKLFSEC 164 (172)
Q Consensus 148 ~l~~l~~~~~~~lf~~~ 164 (172)
++.+++.++....+...
T Consensus 174 ~F~pLs~~eL~~~L~~i 190 (624)
T PRK14959 174 TFTRLSEAGLEAHLTKV 190 (624)
T ss_pred ccCCCCHHHHHHHHHHH
Confidence 99999999988777653
No 73
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.81 E-value=1.5e-07 Score=74.39 Aligned_cols=139 Identities=19% Similarity=0.232 Sum_probs=94.3
Q ss_pred CCCCccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhcc----cc-------C--c--------
Q 040354 24 ENNNHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITRR----FE-------E--F-------- 82 (172)
Q Consensus 24 ~~~~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~----f~-------~--~-------- 82 (172)
.....++|.+...+.+...+..+.- ...+.|+|+.|+||||+|..+...+... +. + .
T Consensus 20 ~~~~~l~Gh~~a~~~L~~a~~~grl--~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~~ 97 (351)
T PRK09112 20 SENTRLFGHEEAEAFLAQAYREGKL--HHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIAQ 97 (351)
T ss_pred CchhhccCcHHHHHHHHHHHHcCCC--CeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHHc
Confidence 5667899999999999998886653 3689999999999999999998884321 10 0 0
Q ss_pred ---Cc------------------ccHHHHHH---HhC-----CCeeEEEEecCC--CHHhHHHHHhhccCCCCCcEEEEE
Q 040354 83 ---PN------------------IGLNFQSK---RLT-----RKKLLIVFDDVH--HPRQIDCLIECLDWFASASRIIII 131 (172)
Q Consensus 83 ---~~------------------~~~~~~~~---~l~-----~~~~LlvlDdv~--~~~~~~~l~~~~~~~~~~s~iiiT 131 (172)
.+ +..+.++. .+. ++.-++|+|+++ +....+.++..+......+.+|++
T Consensus 98 ~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLi 177 (351)
T PRK09112 98 GAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILI 177 (351)
T ss_pred CCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEE
Confidence 11 11233322 222 345689999997 455677788777654455555555
Q ss_pred eCCh-hHHHhc-CCCceEEcCCCCHHHHHHHHhhh
Q 040354 132 SRDK-QALISC-GVNKIYQMQELVHADALKLFSEC 164 (172)
Q Consensus 132 tr~~-~~~~~~-~~~~~~~l~~l~~~~~~~lf~~~ 164 (172)
|... .+...+ .....+++.+++.++..+++.+.
T Consensus 178 t~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~ 212 (351)
T PRK09112 178 SHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHL 212 (351)
T ss_pred ECChhhccHHHHhhccEEEecCCCHHHHHHHHHHh
Confidence 5443 333222 23458999999999999988874
No 74
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.80 E-value=8.2e-08 Score=78.16 Aligned_cols=140 Identities=17% Similarity=0.160 Sum_probs=78.9
Q ss_pred CCCCccccccchHH--HHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc-------Ccc---c-----
Q 040354 24 ENNNHLVGIESRTE--EIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITRRFEEF-------PNI---G----- 86 (172)
Q Consensus 24 ~~~~~~~Gr~~~~~--~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~-------~~~---~----- 86 (172)
..++.++|-..... ...++.... +. ...+.|||++|+|||+|++.+++.+....... +++ .
T Consensus 103 tFdnFv~g~~n~~a~~~~~~~~~~~-~~-~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~ 180 (440)
T PRK14088 103 TFENFVVGPGNSFAYHAALEVAKNP-GR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMK 180 (440)
T ss_pred cccccccCCchHHHHHHHHHHHhCc-CC-CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHh
Confidence 34455667544332 333333322 22 35699999999999999999999854432111 111 1
Q ss_pred ---HHHHHHHhCCCeeEEEEecCCCH---HhH-HHHHhhccCC-CCCcEEEEEeC-ChhH--------HHhcCCCceEEc
Q 040354 87 ---LNFQSKRLTRKKLLIVFDDVHHP---RQI-DCLIECLDWF-ASASRIIIISR-DKQA--------LISCGVNKIYQM 149 (172)
Q Consensus 87 ---~~~~~~~l~~~~~LlvlDdv~~~---~~~-~~l~~~~~~~-~~~s~iiiTtr-~~~~--------~~~~~~~~~~~l 149 (172)
...+.+.+....-+|++||++.. ..+ ..+...+... ..+..||+||. ...- ...+....++++
T Consensus 181 ~~~~~~f~~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i 260 (440)
T PRK14088 181 EGKLNEFREKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKL 260 (440)
T ss_pred cccHHHHHHHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEee
Confidence 11222223233458999999733 111 2233332211 23456888774 3322 122334557899
Q ss_pred CCCCHHHHHHHHhhhc
Q 040354 150 QELVHADALKLFSECA 165 (172)
Q Consensus 150 ~~l~~~~~~~lf~~~a 165 (172)
++.+.+.-..++.+.+
T Consensus 261 ~~pd~e~r~~IL~~~~ 276 (440)
T PRK14088 261 EPPDEETRKKIARKML 276 (440)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999888765
No 75
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.80 E-value=7.8e-08 Score=77.54 Aligned_cols=139 Identities=15% Similarity=0.150 Sum_probs=77.0
Q ss_pred CCCccccccchHH--HHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc-------Ccc----------
Q 040354 25 NNNHLVGIESRTE--EIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITRRFEEF-------PNI---------- 85 (172)
Q Consensus 25 ~~~~~~Gr~~~~~--~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~-------~~~---------- 85 (172)
.++.++|...... .+.++....... ...+.|+|++|+|||+|++++++.+..+.... .++
T Consensus 109 fd~fi~g~~n~~a~~~~~~~~~~~~~~-~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~ 187 (405)
T TIGR00362 109 FDNFVVGKSNRLAHAAALAVAENPGKA-YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRN 187 (405)
T ss_pred ccccccCCcHHHHHHHHHHHHhCcCcc-CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHc
Confidence 3344567554422 223333322211 35789999999999999999999864432111 111
Q ss_pred -cHHHHHHHhCCCeeEEEEecCCCH---H-hHHHHHhhccCC-CCCcEEEEEeCCh-h--------HHHhcCCCceEEcC
Q 040354 86 -GLNFQSKRLTRKKLLIVFDDVHHP---R-QIDCLIECLDWF-ASASRIIIISRDK-Q--------ALISCGVNKIYQMQ 150 (172)
Q Consensus 86 -~~~~~~~~l~~~~~LlvlDdv~~~---~-~~~~l~~~~~~~-~~~s~iiiTtr~~-~--------~~~~~~~~~~~~l~ 150 (172)
....+.+.+.. .-+|+|||++.. + ..+.+...+... ..+..+|+|+... . +...+.....+++.
T Consensus 188 ~~~~~~~~~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~ 266 (405)
T TIGR00362 188 NKMEEFKEKYRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIE 266 (405)
T ss_pred CCHHHHHHHHHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeC
Confidence 01112222222 248899999632 1 122333333221 2345577777532 1 22223344578999
Q ss_pred CCCHHHHHHHHhhhc
Q 040354 151 ELVHADALKLFSECA 165 (172)
Q Consensus 151 ~l~~~~~~~lf~~~a 165 (172)
+.+.++...++.+++
T Consensus 267 ~pd~~~r~~il~~~~ 281 (405)
T TIGR00362 267 PPDLETRLAILQKKA 281 (405)
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999888765
No 76
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.79 E-value=1.1e-07 Score=83.16 Aligned_cols=133 Identities=11% Similarity=0.071 Sum_probs=80.5
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhccc--------cCc----Ccc---------
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITRRF--------EEF----PNI--------- 85 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f--------~~~----~~~--------- 85 (172)
+.++||+.+++++.+.|.... ...+.++|++|+|||+||+.++..+.... ... ..+
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~---~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~ 254 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT---KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGE 254 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC---cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhh
Confidence 569999999999999998654 34677999999999999999998853311 000 110
Q ss_pred cHHHHHHHh----C-CCeeEEEEecCCCHH----------hHHHHHhhccCCCCCcEEEEEeCChhHHHh------c-CC
Q 040354 86 GLNFQSKRL----T-RKKLLIVFDDVHHPR----------QIDCLIECLDWFASASRIIIISRDKQALIS------C-GV 143 (172)
Q Consensus 86 ~~~~~~~~l----~-~~~~LlvlDdv~~~~----------~~~~l~~~~~~~~~~s~iiiTtr~~~~~~~------~-~~ 143 (172)
....++..+ . ..+.+|++|+++... .-+.+.+.+.. ..-++|-+|-...+... + ..
T Consensus 255 ~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~--g~l~~IgaTt~~e~r~~~~~d~al~rR 332 (857)
T PRK10865 255 FEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGATTLDEYRQYIEKDAALERR 332 (857)
T ss_pred hHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhc--CCCeEEEcCCCHHHHHHhhhcHHHHhh
Confidence 112333332 2 357899999996431 23333333321 22345544443332111 1 12
Q ss_pred CceEEcCCCCHHHHHHHHhhh
Q 040354 144 NKIYQMQELVHADALKLFSEC 164 (172)
Q Consensus 144 ~~~~~l~~l~~~~~~~lf~~~ 164 (172)
...+.+...+.++...++...
T Consensus 333 f~~i~v~eP~~~~~~~iL~~l 353 (857)
T PRK10865 333 FQKVFVAEPSVEDTIAILRGL 353 (857)
T ss_pred CCEEEeCCCCHHHHHHHHHHH
Confidence 235667777888888877644
No 77
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.79 E-value=1.1e-07 Score=77.41 Aligned_cols=141 Identities=11% Similarity=0.076 Sum_probs=79.1
Q ss_pred CCCCccccccchHH--HHHHHhcC---CCCCCeeEEEEEcCCCchHHHHHHHHHHHHhcc-ccCc----Ccc---cH---
Q 040354 24 ENNNHLVGIESRTE--EIESVLGV---GSTMNICKLGISGSGDIGKITIAGAIFNKITRR-FEEF----PNI---GL--- 87 (172)
Q Consensus 24 ~~~~~~~Gr~~~~~--~l~~~l~~---~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~-f~~~----~~~---~~--- 87 (172)
..++.++|...... .+.++... ..+.....+.|+|++|+|||+|++.+++.+... .... +++ ..
T Consensus 109 tFdnFv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l 188 (445)
T PRK12422 109 TFANFLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAI 188 (445)
T ss_pred cccceeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHH
Confidence 44456667655533 33334321 111113578999999999999999999985432 1111 111 11
Q ss_pred -----HHHHHHhCCCeeEEEEecCCCH----HhHHHHHhhccCC-CCCcEEEEEeCCh---------hHHHhcCCCceEE
Q 040354 88 -----NFQSKRLTRKKLLIVFDDVHHP----RQIDCLIECLDWF-ASASRIIIISRDK---------QALISCGVNKIYQ 148 (172)
Q Consensus 88 -----~~~~~~l~~~~~LlvlDdv~~~----~~~~~l~~~~~~~-~~~s~iiiTtr~~---------~~~~~~~~~~~~~ 148 (172)
..++..+. ..-+|++||+... ...+.++..+... ..|..||+||... .+...+..+.+++
T Consensus 189 ~~~~~~~f~~~~~-~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~ 267 (445)
T PRK12422 189 RSGEMQRFRQFYR-NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIP 267 (445)
T ss_pred hcchHHHHHHHcc-cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEe
Confidence 11222222 2348889999632 1122333332211 1355688887542 2223334556889
Q ss_pred cCCCCHHHHHHHHhhhc
Q 040354 149 MQELVHADALKLFSECA 165 (172)
Q Consensus 149 l~~l~~~~~~~lf~~~a 165 (172)
+.+++.++...++.+++
T Consensus 268 l~~pd~e~r~~iL~~k~ 284 (445)
T PRK12422 268 LHPLTKEGLRSFLERKA 284 (445)
T ss_pred cCCCCHHHHHHHHHHHH
Confidence 99999999999887765
No 78
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.78 E-value=1e-07 Score=83.37 Aligned_cols=132 Identities=13% Similarity=0.078 Sum_probs=81.2
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc------------Ccc---------
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITRRFEEF------------PNI--------- 85 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~------------~~~--------- 85 (172)
+.++||+.+++++...|.... ...+.++|++|+|||++|+.++..+...+... ..+
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~---~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~ 249 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT---KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGE 249 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC---CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhh
Confidence 569999999999999988654 34667899999999999999998854321110 000
Q ss_pred cHHHHHHHh----C-CCeeEEEEecCCCHH----------hHHHHHhhccCCCCC-cEEEEEeCChhHHHh-------cC
Q 040354 86 GLNFQSKRL----T-RKKLLIVFDDVHHPR----------QIDCLIECLDWFASA-SRIIIISRDKQALIS-------CG 142 (172)
Q Consensus 86 ~~~~~~~~l----~-~~~~LlvlDdv~~~~----------~~~~l~~~~~~~~~~-s~iiiTtr~~~~~~~-------~~ 142 (172)
....++..+ . .++.+|++|+++... ..+.+.+.+ ..| -++|-+|-...+... ..
T Consensus 250 ~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l---~~g~i~~IgaTt~~e~r~~~~~d~al~r 326 (852)
T TIGR03346 250 FEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL---ARGELHCIGATTLDEYRKYIEKDAALER 326 (852)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh---hcCceEEEEeCcHHHHHHHhhcCHHHHh
Confidence 111233332 2 357999999996331 223333222 233 344544443332111 12
Q ss_pred CCceEEcCCCCHHHHHHHHhhh
Q 040354 143 VNKIYQMQELVHADALKLFSEC 164 (172)
Q Consensus 143 ~~~~~~l~~l~~~~~~~lf~~~ 164 (172)
....+.+...+.++...++...
T Consensus 327 Rf~~i~v~~p~~~~~~~iL~~~ 348 (852)
T TIGR03346 327 RFQPVFVDEPTVEDTISILRGL 348 (852)
T ss_pred cCCEEEeCCCCHHHHHHHHHHH
Confidence 3346789999999999887643
No 79
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.77 E-value=6.5e-09 Score=74.46 Aligned_cols=51 Identities=22% Similarity=0.426 Sum_probs=34.5
Q ss_pred ccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhcc
Q 040354 28 HLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITRR 78 (172)
Q Consensus 28 ~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 78 (172)
.|+||+++++++...+........+.+.|+|++|+|||+|+++++..+..+
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 489999999999999952222236899999999999999999998885443
No 80
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.76 E-value=2.5e-07 Score=66.85 Aligned_cols=125 Identities=14% Similarity=0.195 Sum_probs=80.0
Q ss_pred HHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhcc---------------------cc-Cc------CcccHHH
Q 040354 38 EIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITRR---------------------FE-EF------PNIGLNF 89 (172)
Q Consensus 38 ~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~---------------------f~-~~------~~~~~~~ 89 (172)
.+.+.+....- ...+.++|+.|+|||++|+.+.+.+... +. .. .....+.
T Consensus 3 ~l~~~i~~~~~--~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~ 80 (188)
T TIGR00678 3 QLKRALEKGRL--AHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQ 80 (188)
T ss_pred HHHHHHHcCCC--CeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHH
Confidence 34455544332 3789999999999999999999885321 10 00 0112233
Q ss_pred HH---HHh-----CCCeeEEEEecCCC--HHhHHHHHhhccCCCCCcEEEEEeCCh-hHHHhc-CCCceEEcCCCCHHHH
Q 040354 90 QS---KRL-----TRKKLLIVFDDVHH--PRQIDCLIECLDWFASASRIIIISRDK-QALISC-GVNKIYQMQELVHADA 157 (172)
Q Consensus 90 ~~---~~l-----~~~~~LlvlDdv~~--~~~~~~l~~~~~~~~~~s~iiiTtr~~-~~~~~~-~~~~~~~l~~l~~~~~ 157 (172)
++ +.+ .+.+-++|+|+++. ...++.++..+....+.+.+|+++++. .+...+ .....+++.+++.++.
T Consensus 81 i~~i~~~~~~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~ 160 (188)
T TIGR00678 81 VRELVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEAL 160 (188)
T ss_pred HHHHHHHHccCcccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHH
Confidence 32 221 23566899999974 345777887777655667777777654 222222 2446899999999998
Q ss_pred HHHHhhh
Q 040354 158 LKLFSEC 164 (172)
Q Consensus 158 ~~lf~~~ 164 (172)
..++.+.
T Consensus 161 ~~~l~~~ 167 (188)
T TIGR00678 161 LQWLIRQ 167 (188)
T ss_pred HHHHHHc
Confidence 8887765
No 81
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.76 E-value=3.9e-07 Score=76.71 Aligned_cols=136 Identities=13% Similarity=0.189 Sum_probs=89.4
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhcc-----ccCc--------------C----
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITRR-----FEEF--------------P---- 83 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~-----f~~~--------------~---- 83 (172)
+.++|.+..++.|..++....- ...+.++|+.|+||||+|+.+++.+... +..+ .
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~i--~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~~ 93 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGRV--AHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDVIE 93 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCCC--ceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeEEE
Confidence 6899999999999888876542 3678999999999999999999874311 1100 0
Q ss_pred ----c-ccHHHHHHHh--------CCCeeEEEEecCCC--HHhHHHHHhhccCCCCCcEEEEEeCCh-hHHHhc-CCCce
Q 040354 84 ----N-IGLNFQSKRL--------TRKKLLIVFDDVHH--PRQIDCLIECLDWFASASRIIIISRDK-QALISC-GVNKI 146 (172)
Q Consensus 84 ----~-~~~~~~~~~l--------~~~~~LlvlDdv~~--~~~~~~l~~~~~~~~~~s~iiiTtr~~-~~~~~~-~~~~~ 146 (172)
. ...+.++... ..++-++|+|+++. ...++.|+..+......+.+|+++.+. .+...+ .....
T Consensus 94 i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~SR~~~ 173 (585)
T PRK14950 94 MDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSRCQR 173 (585)
T ss_pred EeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHhccce
Confidence 1 1222232221 23466899999974 455777877776555566666666442 333322 23457
Q ss_pred EEcCCCCHHHHHHHHhhh
Q 040354 147 YQMQELVHADALKLFSEC 164 (172)
Q Consensus 147 ~~l~~l~~~~~~~lf~~~ 164 (172)
+++.+++.++....+.+.
T Consensus 174 i~f~~l~~~el~~~L~~~ 191 (585)
T PRK14950 174 FDFHRHSVADMAAHLRKI 191 (585)
T ss_pred eeCCCCCHHHHHHHHHHH
Confidence 889999988877766654
No 82
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.76 E-value=2.4e-07 Score=76.71 Aligned_cols=135 Identities=15% Similarity=0.224 Sum_probs=92.0
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHh-ccc---------------------cCc--
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKIT-RRF---------------------EEF-- 82 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~-~~f---------------------~~~-- 82 (172)
+.++|.+...+.+...+..+.- ...+.++|++|+||||+|+.+++.+. ... +..
T Consensus 14 deiiGqe~v~~~L~~~I~~grl--~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~el 91 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNRL--AHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEM 91 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCCC--CeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEe
Confidence 6799999999999998875542 46789999999999999999998842 111 000
Q ss_pred ---CcccHHHHHHHhC--------CCeeEEEEecCCC--HHhHHHHHhhccCCCCCcEEEEEeCChh-HHHh-cCCCceE
Q 040354 83 ---PNIGLNFQSKRLT--------RKKLLIVFDDVHH--PRQIDCLIECLDWFASASRIIIISRDKQ-ALIS-CGVNKIY 147 (172)
Q Consensus 83 ---~~~~~~~~~~~l~--------~~~~LlvlDdv~~--~~~~~~l~~~~~~~~~~s~iiiTtr~~~-~~~~-~~~~~~~ 147 (172)
.+...+.++.... ++.-++|+|+++. .+..+.|+..+....+.+++|++|.+.. +... ......+
T Consensus 92 daas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SRc~~~ 171 (535)
T PRK08451 92 DAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQHF 171 (535)
T ss_pred ccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhhceeE
Confidence 1112344444332 3456899999974 4567888878876666777777776532 2222 1244678
Q ss_pred EcCCCCHHHHHHHHhh
Q 040354 148 QMQELVHADALKLFSE 163 (172)
Q Consensus 148 ~l~~l~~~~~~~lf~~ 163 (172)
++.+++.++....+.+
T Consensus 172 ~F~~Ls~~ei~~~L~~ 187 (535)
T PRK08451 172 RFKQIPQNSIISHLKT 187 (535)
T ss_pred EcCCCCHHHHHHHHHH
Confidence 9999999988777654
No 83
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.75 E-value=2.8e-07 Score=79.32 Aligned_cols=133 Identities=15% Similarity=0.129 Sum_probs=80.2
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHh-ccccCc--------Cc---c---------
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKIT-RRFEEF--------PN---I--------- 85 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~-~~f~~~--------~~---~--------- 85 (172)
+.++||+++++++.+.|.... ...+.|+|++|+|||++|+.++..+. ...+.. -+ +
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~---~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge 262 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR---KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGD 262 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC---CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhh
Confidence 468999999999999888644 24567899999999999999998742 211100 00 0
Q ss_pred cHHHHHHH---h-CCCeeEEEEecCCCH----------HhH-HHHHhhccCCCCCcEEEEEeCChhHHHh-------cCC
Q 040354 86 GLNFQSKR---L-TRKKLLIVFDDVHHP----------RQI-DCLIECLDWFASASRIIIISRDKQALIS-------CGV 143 (172)
Q Consensus 86 ~~~~~~~~---l-~~~~~LlvlDdv~~~----------~~~-~~l~~~~~~~~~~s~iiiTtr~~~~~~~-------~~~ 143 (172)
....++.. + ...+.+|++|+++.. .+. +.+.+.+.. ..-++|-+|....+... ...
T Consensus 263 ~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~--g~i~vIgATt~~E~~~~~~~D~AL~rR 340 (758)
T PRK11034 263 FEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKIRVIGSTTYQEFSNIFEKDRALARR 340 (758)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC--CCeEEEecCChHHHHHHhhccHHHHhh
Confidence 11112222 2 345689999999632 112 223333321 22344544443332111 113
Q ss_pred CceEEcCCCCHHHHHHHHhhh
Q 040354 144 NKIYQMQELVHADALKLFSEC 164 (172)
Q Consensus 144 ~~~~~l~~l~~~~~~~lf~~~ 164 (172)
-..+.+++++.++...++...
T Consensus 341 Fq~I~v~ePs~~~~~~IL~~~ 361 (758)
T PRK11034 341 FQKIDITEPSIEETVQIINGL 361 (758)
T ss_pred CcEEEeCCCCHHHHHHHHHHH
Confidence 357899999999999988753
No 84
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.74 E-value=4.5e-07 Score=75.81 Aligned_cols=136 Identities=13% Similarity=0.177 Sum_probs=91.2
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHh-cc---------------------ccCc--
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKIT-RR---------------------FEEF-- 82 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~-~~---------------------f~~~-- 82 (172)
++++|.+..++.|..++....- ...+.++|++|+||||+|+.+++.+. .+ ++..
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~i--~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv~~i 93 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNKI--ANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDVIEI 93 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCCC--CeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCeEEe
Confidence 6789999999999999986542 47899999999999999999999842 11 1110
Q ss_pred ---CcccHHHHHHHh--------CCCeeEEEEecCCC--HHhHHHHHhhccCCCCCcEEEEEeCC-hhHHHhc-CCCceE
Q 040354 83 ---PNIGLNFQSKRL--------TRKKLLIVFDDVHH--PRQIDCLIECLDWFASASRIIIISRD-KQALISC-GVNKIY 147 (172)
Q Consensus 83 ---~~~~~~~~~~~l--------~~~~~LlvlDdv~~--~~~~~~l~~~~~~~~~~s~iiiTtr~-~~~~~~~-~~~~~~ 147 (172)
.+...+.+++.. .+++-++|+|+++. ...++.|+..+....+.+.+|++|.+ ..+...+ .....+
T Consensus 94 dgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SRc~~~ 173 (563)
T PRK06647 94 DGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQHF 173 (563)
T ss_pred cCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHhceEE
Confidence 111223333322 24556899999974 45578888777655556666665543 3333332 234578
Q ss_pred EcCCCCHHHHHHHHhhh
Q 040354 148 QMQELVHADALKLFSEC 164 (172)
Q Consensus 148 ~l~~l~~~~~~~lf~~~ 164 (172)
++.+++.++..+.+.+.
T Consensus 174 ~f~~l~~~el~~~L~~i 190 (563)
T PRK06647 174 NFRLLSLEKIYNMLKKV 190 (563)
T ss_pred EecCCCHHHHHHHHHHH
Confidence 99999998887777654
No 85
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.74 E-value=3.5e-07 Score=77.21 Aligned_cols=135 Identities=16% Similarity=0.250 Sum_probs=91.8
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHh-c----------------------cccCc-
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKIT-R----------------------RFEEF- 82 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~-~----------------------~f~~~- 82 (172)
+.++|.+...+.|.+++..+.- ...+.++|+.|+||||+|+.+...+. . +|+..
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~l--~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~~ 94 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNKL--AHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIHE 94 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC--CeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceEE
Confidence 6789999999999999876542 47789999999999999999888743 1 12111
Q ss_pred ----CcccHHHHHHHh--------CCCeeEEEEecCCC--HHhHHHHHhhccCCCCCcEEEEEe-CChhHHHhc-CCCce
Q 040354 83 ----PNIGLNFQSKRL--------TRKKLLIVFDDVHH--PRQIDCLIECLDWFASASRIIIIS-RDKQALISC-GVNKI 146 (172)
Q Consensus 83 ----~~~~~~~~~~~l--------~~~~~LlvlDdv~~--~~~~~~l~~~~~~~~~~s~iiiTt-r~~~~~~~~-~~~~~ 146 (172)
++...+.++..+ .+++-++|+|+++. ...++.|...+......+.+|++| ....+...+ .....
T Consensus 95 ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SRc~i 174 (614)
T PRK14971 95 LDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQI 174 (614)
T ss_pred ecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhhhhe
Confidence 111233343332 23455889999974 456888888877655666665544 444444332 34567
Q ss_pred EEcCCCCHHHHHHHHhh
Q 040354 147 YQMQELVHADALKLFSE 163 (172)
Q Consensus 147 ~~l~~l~~~~~~~lf~~ 163 (172)
+++.+++.++....+.+
T Consensus 175 v~f~~ls~~ei~~~L~~ 191 (614)
T PRK14971 175 FDFNRIQVADIVNHLQY 191 (614)
T ss_pred eecCCCCHHHHHHHHHH
Confidence 99999999998877764
No 86
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=3.1e-07 Score=77.08 Aligned_cols=141 Identities=15% Similarity=0.181 Sum_probs=90.1
Q ss_pred CCCccccccchHHHHHHHhc----CCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc------------------
Q 040354 25 NNNHLVGIESRTEEIESVLG----VGSTMNICKLGISGSGDIGKITIAGAIFNKITRRFEEF------------------ 82 (172)
Q Consensus 25 ~~~~~~Gr~~~~~~l~~~l~----~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~------------------ 82 (172)
.+.+.+|.++..++|.++|. ...-. .++++++||||+|||+|++.++..+...|-..
T Consensus 321 Ld~dHYGLekVKeRIlEyLAV~~l~~~~k-GpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTY 399 (782)
T COG0466 321 LDKDHYGLEKVKERILEYLAVQKLTKKLK-GPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTY 399 (782)
T ss_pred hcccccCchhHHHHHHHHHHHHHHhccCC-CcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccc
Confidence 45578999999999999886 11112 48999999999999999999999987776544
Q ss_pred -CcccHHHHHHHh---CCCeeEEEEecCCCHH------hHHHHHhhccCCC-------------CCcE-EEEEeCCh-h-
Q 040354 83 -PNIGLNFQSKRL---TRKKLLIVFDDVHHPR------QIDCLIECLDWFA-------------SASR-IIIISRDK-Q- 136 (172)
Q Consensus 83 -~~~~~~~~~~~l---~~~~~LlvlDdv~~~~------~~~~l~~~~~~~~-------------~~s~-iiiTtr~~-~- 136 (172)
.. ....+-+.+ +..+-+++||+||... --..++..++... .=|. ++|+|-|. +
T Consensus 400 IGa-mPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~t 478 (782)
T COG0466 400 IGA-MPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDT 478 (782)
T ss_pred ccc-CChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCcccc
Confidence 11 222222222 3356789999997431 1233333332111 1233 34555442 2
Q ss_pred HH-HhcCCCceEEcCCCCHHHHHHHHhhhcCC
Q 040354 137 AL-ISCGVNKIYQMQELVHADALKLFSECAFE 167 (172)
Q Consensus 137 ~~-~~~~~~~~~~l~~l~~~~~~~lf~~~a~~ 167 (172)
+. ..+...+++++.+-+++|-.++-+++-.+
T Consensus 479 IP~PLlDRMEiI~lsgYt~~EKl~IAk~~LiP 510 (782)
T COG0466 479 IPAPLLDRMEVIRLSGYTEDEKLEIAKRHLIP 510 (782)
T ss_pred CChHHhcceeeeeecCCChHHHHHHHHHhcch
Confidence 11 22356689999999999998877766443
No 87
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.73 E-value=3.5e-07 Score=70.41 Aligned_cols=114 Identities=13% Similarity=0.151 Sum_probs=68.1
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhc-------cccCc--Ccc-------cHHHHHHHhCC-CeeEEEEecCCCH-----
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKITR-------RFEEF--PNI-------GLNFQSKRLTR-KKLLIVFDDVHHP----- 109 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~~~-------~f~~~--~~~-------~~~~~~~~l~~-~~~LlvlDdv~~~----- 109 (172)
..+.++|++|+|||++|+.+...+.. .|-.. .++ ....+...+.. ..-+|+||+++..
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g~~~~~~~~~~~~a~~gvL~iDEi~~L~~~~~ 138 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEILKRAMGGVLFIDEAYYLYRPDN 138 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhcccchHHHHHHHHHccCcEEEEechhhhccCCC
Confidence 36889999999999999888776432 12111 111 11222222222 3468999999632
Q ss_pred ------HhHHHHHhhccCCCCCcEEEEEeCChhHHHhc--C------CCceEEcCCCCHHHHHHHHhhhc
Q 040354 110 ------RQIDCLIECLDWFASASRIIIISRDKQALISC--G------VNKIYQMQELVHADALKLFSECA 165 (172)
Q Consensus 110 ------~~~~~l~~~~~~~~~~s~iiiTtr~~~~~~~~--~------~~~~~~l~~l~~~~~~~lf~~~a 165 (172)
+.++.+...+.....+.+||.++........+ . ....+++++++.+|..+++.+.+
T Consensus 139 ~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l 208 (284)
T TIGR02880 139 ERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLML 208 (284)
T ss_pred ccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHH
Confidence 22455555555444556677766543221111 1 23568999999999999887653
No 88
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.73 E-value=2.2e-07 Score=74.60 Aligned_cols=138 Identities=14% Similarity=0.168 Sum_probs=83.1
Q ss_pred CccccccchHHHHHHHhc----C------CCCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc--Cc-----c----
Q 040354 27 NHLVGIESRTEEIESVLG----V------GSTMNICKLGISGSGDIGKITIAGAIFNKITRRFEEF--PN-----I---- 85 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~----~------~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~--~~-----~---- 85 (172)
.++.|.+...+.|.+.+. . -.-..++-+.|+|++|+|||+||+.+++.....|-.. .+ .
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~ge~~ 224 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGEGP 224 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcchhH
Confidence 467788888887776543 1 0111257899999999999999999999865554332 00 0
Q ss_pred --cHHHHHHHhCCCeeEEEEecCCCHH----------------hHHHHHhhccCC--CCCcEEEEEeCChhHHHh--c--
Q 040354 86 --GLNFQSKRLTRKKLLIVFDDVHHPR----------------QIDCLIECLDWF--ASASRIIIISRDKQALIS--C-- 141 (172)
Q Consensus 86 --~~~~~~~~l~~~~~LlvlDdv~~~~----------------~~~~l~~~~~~~--~~~s~iiiTtr~~~~~~~--~-- 141 (172)
....+.......+.+|+||+++... .+..+...+... ..+..||.||...+.... +
T Consensus 225 ~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~ 304 (398)
T PTZ00454 225 RMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRP 304 (398)
T ss_pred HHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCC
Confidence 1222222234567899999986320 122333333221 235567777765443311 1
Q ss_pred -CCCceEEcCCCCHHHHHHHHhhh
Q 040354 142 -GVNKIYQMQELVHADALKLFSEC 164 (172)
Q Consensus 142 -~~~~~~~l~~l~~~~~~~lf~~~ 164 (172)
.....+++...+.++...+|...
T Consensus 305 GRfd~~I~~~~P~~~~R~~Il~~~ 328 (398)
T PTZ00454 305 GRLDRKIEFPLPDRRQKRLIFQTI 328 (398)
T ss_pred CcccEEEEeCCcCHHHHHHHHHHH
Confidence 13456889999998887777644
No 89
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.70 E-value=1.1e-06 Score=73.60 Aligned_cols=137 Identities=15% Similarity=0.193 Sum_probs=89.0
Q ss_pred CCccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHh-cc---------------------ccCc-
Q 040354 26 NNHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKIT-RR---------------------FEEF- 82 (172)
Q Consensus 26 ~~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~-~~---------------------f~~~- 82 (172)
-++++|.+...+.+.+++....- ...+.++|+.|+||||+|+.+...+. .+ ++..
T Consensus 15 f~~viGq~~v~~~L~~~i~~~~~--~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv~e 92 (559)
T PRK05563 15 FEDVVGQEHITKTLKNAIKQGKI--SHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDVIE 92 (559)
T ss_pred HHhccCcHHHHHHHHHHHHcCCC--CeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCeEE
Confidence 37899999999999999986543 36788999999999999999988742 11 1100
Q ss_pred ----CcccHHHHHHHh--------CCCeeEEEEecCCCH--HhHHHHHhhccCCCCCcEEEEEe-CChhHHHhc-CCCce
Q 040354 83 ----PNIGLNFQSKRL--------TRKKLLIVFDDVHHP--RQIDCLIECLDWFASASRIIIIS-RDKQALISC-GVNKI 146 (172)
Q Consensus 83 ----~~~~~~~~~~~l--------~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~s~iiiTt-r~~~~~~~~-~~~~~ 146 (172)
.+...+.++... .++.-++|+|+++.. ..++.|+..+......+.+|++| ....+...+ .....
T Consensus 93 idaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SRc~~ 172 (559)
T PRK05563 93 IDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSRCQR 172 (559)
T ss_pred eeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhHheE
Confidence 111223333221 234568899999744 56788887776544455555444 333333222 23457
Q ss_pred EEcCCCCHHHHHHHHhhh
Q 040354 147 YQMQELVHADALKLFSEC 164 (172)
Q Consensus 147 ~~l~~l~~~~~~~lf~~~ 164 (172)
+++.+++.++....+.+.
T Consensus 173 ~~f~~~~~~ei~~~L~~i 190 (559)
T PRK05563 173 FDFKRISVEDIVERLKYI 190 (559)
T ss_pred EecCCCCHHHHHHHHHHH
Confidence 889999998887766553
No 90
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.68 E-value=5.9e-07 Score=75.45 Aligned_cols=135 Identities=13% Similarity=0.264 Sum_probs=88.9
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHh-ccc---------------------cCc--
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKIT-RRF---------------------EEF-- 82 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~-~~f---------------------~~~-- 82 (172)
++++|.+...+.|.+++..+.- ...+.++|+.|+||||+|+.+++.+. .+. +..
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~~--~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~ei 93 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGRV--AHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFEI 93 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCCC--CeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeeee
Confidence 6799999999999998876542 36788999999999999999998842 211 000
Q ss_pred ---CcccHHHHHHHh--------CCCeeEEEEecCCC--HHhHHHHHhhccCCCCCcEEEEEe-CChhHHHhc-CCCceE
Q 040354 83 ---PNIGLNFQSKRL--------TRKKLLIVFDDVHH--PRQIDCLIECLDWFASASRIIIIS-RDKQALISC-GVNKIY 147 (172)
Q Consensus 83 ---~~~~~~~~~~~l--------~~~~~LlvlDdv~~--~~~~~~l~~~~~~~~~~s~iiiTt-r~~~~~~~~-~~~~~~ 147 (172)
++...+.++... .++.-++|+|+++. ....+.|+..+....+.+.+|++| ....+...+ .....+
T Consensus 94 d~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SRc~~~ 173 (576)
T PRK14965 94 DGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRF 173 (576)
T ss_pred eccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHhhhhh
Confidence 111222333221 23445889999974 455788888887655666666555 444444332 234578
Q ss_pred EcCCCCHHHHHHHHhh
Q 040354 148 QMQELVHADALKLFSE 163 (172)
Q Consensus 148 ~l~~l~~~~~~~lf~~ 163 (172)
++.+++.++....+..
T Consensus 174 ~f~~l~~~~i~~~L~~ 189 (576)
T PRK14965 174 DFRRIPLQKIVDRLRY 189 (576)
T ss_pred hcCCCCHHHHHHHHHH
Confidence 8899988887766553
No 91
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.68 E-value=4.1e-07 Score=79.95 Aligned_cols=134 Identities=13% Similarity=0.135 Sum_probs=77.9
Q ss_pred CCCCccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc---------------------
Q 040354 24 ENNNHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITRRFEEF--------------------- 82 (172)
Q Consensus 24 ~~~~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~--------------------- 82 (172)
..+..++-|+.-++.+.. .. . .+++.|+|++|.||||++..+..... ..-..
T Consensus 11 ~~~~~~~~R~rl~~~l~~----~~-~-~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~ 83 (903)
T PRK04841 11 VRLHNTVVRERLLAKLSG----AN-N-YRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQ 83 (903)
T ss_pred CCccccCcchHHHHHHhc----cc-C-CCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHH
Confidence 445677877755555532 22 2 58999999999999999999875421 10000
Q ss_pred ---Ccc---------------cHHHHH---HHh-C-CCeeEEEEecCCCH--HhHHHHHhhc-cCCCCCcEEEEEeCChh
Q 040354 83 ---PNI---------------GLNFQS---KRL-T-RKKLLIVFDDVHHP--RQIDCLIECL-DWFASASRIIIISRDKQ 136 (172)
Q Consensus 83 ---~~~---------------~~~~~~---~~l-~-~~~~LlvlDdv~~~--~~~~~l~~~~-~~~~~~s~iiiTtr~~~ 136 (172)
... ....+. ..+ . ..+++||+||+... .....+...+ ....++.++|+|||...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~ 163 (903)
T PRK04841 84 QATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLP 163 (903)
T ss_pred HhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCC
Confidence 000 001111 112 2 56899999999643 2223223232 33345678889999742
Q ss_pred -H--HHhcCCCceEEcC----CCCHHHHHHHHhhh
Q 040354 137 -A--LISCGVNKIYQMQ----ELVHADALKLFSEC 164 (172)
Q Consensus 137 -~--~~~~~~~~~~~l~----~l~~~~~~~lf~~~ 164 (172)
+ ..........++. +|+.+|+.+||...
T Consensus 164 ~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~ 198 (903)
T PRK04841 164 PLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQR 198 (903)
T ss_pred CCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhc
Confidence 1 1111123345566 99999999988654
No 92
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.67 E-value=3.5e-07 Score=75.60 Aligned_cols=139 Identities=13% Similarity=0.155 Sum_probs=79.6
Q ss_pred CccccccchHHHHHHHhc---CC------CCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc--Ccc----------
Q 040354 27 NHLVGIESRTEEIESVLG---VG------STMNICKLGISGSGDIGKITIAGAIFNKITRRFEEF--PNI---------- 85 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~---~~------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~--~~~---------- 85 (172)
+++.|.+...+.+.+++. .. ....++-+.++|++|+|||+||+.+++...-.|... .++
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~ 134 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGAS 134 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhcccHH
Confidence 457787766655554332 11 111246789999999999999999998855444332 111
Q ss_pred -cHHHHHHHhCCCeeEEEEecCCCHH----------------hHHHHHhhccCCC--CCcEEEEEeCChhHH-Hhc----
Q 040354 86 -GLNFQSKRLTRKKLLIVFDDVHHPR----------------QIDCLIECLDWFA--SASRIIIISRDKQAL-ISC---- 141 (172)
Q Consensus 86 -~~~~~~~~l~~~~~LlvlDdv~~~~----------------~~~~l~~~~~~~~--~~s~iiiTtr~~~~~-~~~---- 141 (172)
+...+.......+.+|+|||++... ....++..+.... .+..||.||...... ..+
T Consensus 135 ~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~g 214 (495)
T TIGR01241 135 RVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPG 214 (495)
T ss_pred HHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCC
Confidence 1222233334467899999996421 1223333332222 234455566543322 111
Q ss_pred CCCceEEcCCCCHHHHHHHHhhhc
Q 040354 142 GVNKIYQMQELVHADALKLFSECA 165 (172)
Q Consensus 142 ~~~~~~~l~~l~~~~~~~lf~~~a 165 (172)
.....+++...+.++-.++|..+.
T Consensus 215 Rfd~~i~i~~Pd~~~R~~il~~~l 238 (495)
T TIGR01241 215 RFDRQVVVDLPDIKGREEILKVHA 238 (495)
T ss_pred cceEEEEcCCCCHHHHHHHHHHHH
Confidence 234578899999988888877653
No 93
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.66 E-value=1.3e-06 Score=73.96 Aligned_cols=135 Identities=15% Similarity=0.205 Sum_probs=89.5
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhc-ccc------Cc-----------------
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITR-RFE------EF----------------- 82 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~-~f~------~~----------------- 82 (172)
..++|.+...+.|..++....- ...+.++|+.|+||||+|+.+++.+.. ... +.
T Consensus 16 ~~liGq~~i~~~L~~~l~~~rl--~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~ 93 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNRI--APAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDVI 93 (620)
T ss_pred hhccChHHHHHHHHHHHHcCCC--CceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccEE
Confidence 6788999999999998886542 367899999999999999999998422 111 00
Q ss_pred -----CcccHHHHHHHh--------CCCeeEEEEecCCC--HHhHHHHHhhccCCCCCcEEEEEeCCh-hHHHhc-CCCc
Q 040354 83 -----PNIGLNFQSKRL--------TRKKLLIVFDDVHH--PRQIDCLIECLDWFASASRIIIISRDK-QALISC-GVNK 145 (172)
Q Consensus 83 -----~~~~~~~~~~~l--------~~~~~LlvlDdv~~--~~~~~~l~~~~~~~~~~s~iiiTtr~~-~~~~~~-~~~~ 145 (172)
.....+.+++.+ .+++-++|+|+++. ...++.|+..+..-...+.+|++|.+. .+...+ ....
T Consensus 94 ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrSRc~ 173 (620)
T PRK14948 94 EIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIISRCQ 173 (620)
T ss_pred EEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHhhee
Confidence 111333444433 23456889999974 456788887777544556555555443 333322 2445
Q ss_pred eEEcCCCCHHHHHHHHhh
Q 040354 146 IYQMQELVHADALKLFSE 163 (172)
Q Consensus 146 ~~~l~~l~~~~~~~lf~~ 163 (172)
.+++.+++.++....+.+
T Consensus 174 ~~~f~~l~~~ei~~~L~~ 191 (620)
T PRK14948 174 RFDFRRIPLEAMVQHLSE 191 (620)
T ss_pred EEEecCCCHHHHHHHHHH
Confidence 788889998887766654
No 94
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.66 E-value=9.9e-08 Score=72.84 Aligned_cols=138 Identities=14% Similarity=0.140 Sum_probs=89.3
Q ss_pred CCCCccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhc--cccCc------Ccc-----cH---
Q 040354 24 ENNNHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITR--RFEEF------PNI-----GL--- 87 (172)
Q Consensus 24 ~~~~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~--~f~~~------~~~-----~~--- 87 (172)
..-+.+.|.+..+..|.+.+.. .. .+...+|||+|+|||+-|..++.++-. -|... ++. ..
T Consensus 33 kt~de~~gQe~vV~~L~~a~~~-~~--lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Ki 109 (346)
T KOG0989|consen 33 KTFDELAGQEHVVQVLKNALLR-RI--LPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKI 109 (346)
T ss_pred CcHHhhcchHHHHHHHHHHHhh-cC--CceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhh
Confidence 3446788999999999888876 22 589999999999999999999988432 34443 111 11
Q ss_pred ---HHHHHHhC---C---Ce-eEEEEecCCCH--HhHHHHHhhccCCCCCcEEEE-EeCChhHHHhc-CCCceEEcCCCC
Q 040354 88 ---NFQSKRLT---R---KK-LLIVFDDVHHP--RQIDCLIECLDWFASASRIII-ISRDKQALISC-GVNKIYQMQELV 153 (172)
Q Consensus 88 ---~~~~~~l~---~---~~-~LlvlDdv~~~--~~~~~l~~~~~~~~~~s~iii-Ttr~~~~~~~~-~~~~~~~l~~l~ 153 (172)
+.+..... + .+ -++|||+++.. +.|..+...+......++.|+ ++--..+...+ ....-++.++|.
T Consensus 110 k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~ 189 (346)
T KOG0989|consen 110 KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLK 189 (346)
T ss_pred cCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCcc
Confidence 11111111 1 12 48899999864 569999999988777777554 44333322222 122357888888
Q ss_pred HHHHHHHHhhh
Q 040354 154 HADALKLFSEC 164 (172)
Q Consensus 154 ~~~~~~lf~~~ 164 (172)
+++...-+..-
T Consensus 190 d~~iv~rL~~I 200 (346)
T KOG0989|consen 190 DEDIVDRLEKI 200 (346)
T ss_pred hHHHHHHHHHH
Confidence 87766555443
No 95
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.66 E-value=4.2e-07 Score=77.39 Aligned_cols=135 Identities=13% Similarity=0.219 Sum_probs=89.2
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHH-hccc------------------cCc-----
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKI-TRRF------------------EEF----- 82 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~-~~~f------------------~~~----- 82 (172)
..++|.+...+.|.+++..+.- ...+.++|++|+||||+|+.++..+ +.+. +..
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~rl--~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaa 95 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNKI--SHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDAA 95 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC--CeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEecc
Confidence 6789999999999998886542 4678899999999999999998873 2111 000
Q ss_pred CcccHHHHHHH---h-----CCCeeEEEEecCCC--HHhHHHHHhhccCCCCCcEEEEEe-CChhHHHh-cCCCceEEcC
Q 040354 83 PNIGLNFQSKR---L-----TRKKLLIVFDDVHH--PRQIDCLIECLDWFASASRIIIIS-RDKQALIS-CGVNKIYQMQ 150 (172)
Q Consensus 83 ~~~~~~~~~~~---l-----~~~~~LlvlDdv~~--~~~~~~l~~~~~~~~~~s~iiiTt-r~~~~~~~-~~~~~~~~l~ 150 (172)
.+...+.++.. + .+++-++|+|+++. ...++.|+..+......+.+|++| ....+... ......+++.
T Consensus 96 sn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRcq~ieF~ 175 (725)
T PRK07133 96 SNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQRFNFR 175 (725)
T ss_pred ccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhceeEEcc
Confidence 00112222222 2 23456899999974 456788887776555555555444 44444433 2344689999
Q ss_pred CCCHHHHHHHHhh
Q 040354 151 ELVHADALKLFSE 163 (172)
Q Consensus 151 ~l~~~~~~~lf~~ 163 (172)
+++.++....+..
T Consensus 176 ~L~~eeI~~~L~~ 188 (725)
T PRK07133 176 RISEDEIVSRLEF 188 (725)
T ss_pred CCCHHHHHHHHHH
Confidence 9999988877654
No 96
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.65 E-value=1.3e-07 Score=76.59 Aligned_cols=139 Identities=14% Similarity=0.232 Sum_probs=85.3
Q ss_pred CccccccchHHHHHHHhcCC----------CCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc--Ccc-------cH
Q 040354 27 NHLVGIESRTEEIESVLGVG----------STMNICKLGISGSGDIGKITIAGAIFNKITRRFEEF--PNI-------GL 87 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~----------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~--~~~-------~~ 87 (172)
.++-|.+.+++.+.+.+... .-.....+.|+|++|+|||++|+.+++.....|-.. .++ ..
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~Ge~~ 262 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGP 262 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhcchHH
Confidence 45678888888887766411 011146788999999999999999999866555332 111 11
Q ss_pred HHHHH----HhCCCeeEEEEecCCCHH----------------hHHHHHhhccCC--CCCcEEEEEeCChhHHHh-c---
Q 040354 88 NFQSK----RLTRKKLLIVFDDVHHPR----------------QIDCLIECLDWF--ASASRIIIISRDKQALIS-C--- 141 (172)
Q Consensus 88 ~~~~~----~l~~~~~LlvlDdv~~~~----------------~~~~l~~~~~~~--~~~s~iiiTtr~~~~~~~-~--- 141 (172)
..++. .....+.+|+||+++... .+..++..+... ..+.+||.+|........ +
T Consensus 263 ~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRp 342 (438)
T PTZ00361 263 KLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRP 342 (438)
T ss_pred HHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccC
Confidence 12222 223467899999985321 122222222221 235567777775543322 1
Q ss_pred -CCCceEEcCCCCHHHHHHHHhhhc
Q 040354 142 -GVNKIYQMQELVHADALKLFSECA 165 (172)
Q Consensus 142 -~~~~~~~l~~l~~~~~~~lf~~~a 165 (172)
.....+++...+.++..++|..+.
T Consensus 343 GRfd~~I~~~~Pd~~~R~~Il~~~~ 367 (438)
T PTZ00361 343 GRIDRKIEFPNPDEKTKRRIFEIHT 367 (438)
T ss_pred CeeEEEEEeCCCCHHHHHHHHHHHH
Confidence 124578999999999999887553
No 97
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.65 E-value=5.2e-07 Score=74.27 Aligned_cols=136 Identities=12% Similarity=0.146 Sum_probs=88.1
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhc---c--ccCc-------------------
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITR---R--FEEF------------------- 82 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~---~--f~~~------------------- 82 (172)
..++|.+...+.+.+++....- ...+.++|++|+||||+|+.++..+.. . ..+.
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~i--~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~ei 93 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQRV--SHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEI 93 (486)
T ss_pred HHccChHHHHHHHHHHHHcCCC--CeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEE
Confidence 6788999999999999986542 367789999999999999999887431 0 0000
Q ss_pred ---CcccHHHHH---HHh-----CCCeeEEEEecCCCH--HhHHHHHhhccCCCCCcEEEEEeCC-hhHHHh-cCCCceE
Q 040354 83 ---PNIGLNFQS---KRL-----TRKKLLIVFDDVHHP--RQIDCLIECLDWFASASRIIIISRD-KQALIS-CGVNKIY 147 (172)
Q Consensus 83 ---~~~~~~~~~---~~l-----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~s~iiiTtr~-~~~~~~-~~~~~~~ 147 (172)
.+...+.++ ..+ .+++-++|+|+++.. ..++.+...+....+.+.+|++|.+ ..+... ......+
T Consensus 94 daas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SRc~~i 173 (486)
T PRK14953 94 DAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRCQRF 173 (486)
T ss_pred eCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHhceEE
Confidence 001122222 222 235569999999743 4567777777654455555555543 333322 2234578
Q ss_pred EcCCCCHHHHHHHHhhh
Q 040354 148 QMQELVHADALKLFSEC 164 (172)
Q Consensus 148 ~l~~l~~~~~~~lf~~~ 164 (172)
++.+++.++....+.+.
T Consensus 174 ~f~~ls~~el~~~L~~i 190 (486)
T PRK14953 174 IFSKPTKEQIKEYLKRI 190 (486)
T ss_pred EcCCCCHHHHHHHHHHH
Confidence 99999999887766653
No 98
>CHL00181 cbbX CbbX; Provisional
Probab=98.64 E-value=1.4e-06 Score=67.27 Aligned_cols=114 Identities=11% Similarity=0.114 Sum_probs=68.7
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhcc-------ccCc--Ccc-------cHHHHHHHhC-CCeeEEEEecCCCH-----
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKITRR-------FEEF--PNI-------GLNFQSKRLT-RKKLLIVFDDVHHP----- 109 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~~~~-------f~~~--~~~-------~~~~~~~~l~-~~~~LlvlDdv~~~----- 109 (172)
..+.++|++|+||||+|+.++...... |-.. .++ ........+. ...-+|++|+++..
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~l~~a~ggVLfIDE~~~l~~~~~ 139 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYIGHTAPKTKEVLKKAMGGVLFIDEAYYLYKPDN 139 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHhccchHHHHHHHHHccCCEEEEEccchhccCCC
Confidence 458899999999999999998874221 1111 111 1111222222 23458999999642
Q ss_pred ------HhHHHHHhhccCCCCCcEEEEEeCChhHHHhc--------CCCceEEcCCCCHHHHHHHHhhhc
Q 040354 110 ------RQIDCLIECLDWFASASRIIIISRDKQALISC--------GVNKIYQMQELVHADALKLFSECA 165 (172)
Q Consensus 110 ------~~~~~l~~~~~~~~~~s~iiiTtr~~~~~~~~--------~~~~~~~l~~l~~~~~~~lf~~~a 165 (172)
+....+...+.......+||+++....+.... .....+.+++++.++..+++.+.+
T Consensus 140 ~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l 209 (287)
T CHL00181 140 ERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIML 209 (287)
T ss_pred ccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHH
Confidence 23445555554444556777777544332111 134578999999999999887664
No 99
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=98.64 E-value=6.4e-07 Score=77.53 Aligned_cols=164 Identities=13% Similarity=0.156 Sum_probs=93.7
Q ss_pred hhHHHHHHHHHHHHhccccCC----------CCCCCccccccchHHHHHHHhcCC---CCCCeeEEEEEcCCCchHHHHH
Q 040354 2 ESKLIDEIFKEVLDWLDDTFQ----------TENNNHLVGIESRTEEIESVLGVG---STMNICKLGISGSGDIGKITIA 68 (172)
Q Consensus 2 ~~~~~~~i~~~v~~~~~~~~~----------~~~~~~~~Gr~~~~~~l~~~l~~~---~~~~~~~i~I~G~~GiGKTtLa 68 (172)
|+..++...+-++.-++.... ...+.+.+|.+...++|..++... ......++.++|++|+||||+|
T Consensus 287 e~~~~~~yl~~~~~~pw~~~~~~~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~ 366 (784)
T PRK10787 287 EATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLG 366 (784)
T ss_pred hHHHHHHHHHHHHhCCCCCCCcccccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHH
Confidence 455555555555543333321 023346899999999998887721 1111468999999999999999
Q ss_pred HHHHHHHhccccCc-----Ccc-------------cHHHHHHHh---CCCeeEEEEecCCCHHh------HHHHHhhccC
Q 040354 69 GAIFNKITRRFEEF-----PNI-------------GLNFQSKRL---TRKKLLIVFDDVHHPRQ------IDCLIECLDW 121 (172)
Q Consensus 69 ~~~~~~~~~~f~~~-----~~~-------------~~~~~~~~l---~~~~~LlvlDdv~~~~~------~~~l~~~~~~ 121 (172)
+.++......|... .+. ....+.+.+ ...+-+++||+++.... ...+...+..
T Consensus 367 ~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~~~~~villDEidk~~~~~~g~~~~aLlevld~ 446 (784)
T PRK10787 367 QSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDP 446 (784)
T ss_pred HHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhcCCCCCEEEEEChhhcccccCCCHHHHHHHHhcc
Confidence 99998755544322 110 111111111 12345789999974321 3445544432
Q ss_pred C---------------CCCcEEEEEeCChhHHHh-cCCCceEEcCCCCHHHHHHHHhhhc
Q 040354 122 F---------------ASASRIIIISRDKQALIS-CGVNKIYQMQELVHADALKLFSECA 165 (172)
Q Consensus 122 ~---------------~~~s~iiiTtr~~~~~~~-~~~~~~~~l~~l~~~~~~~lf~~~a 165 (172)
. -+..-+|.|+....+... +....++++.+++.++-.++..++.
T Consensus 447 ~~~~~~~d~~~~~~~dls~v~~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 447 EQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred ccEEEEecccccccccCCceEEEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 1 022334445543322222 2345689999999999988776654
No 100
>CHL00176 ftsH cell division protein; Validated
Probab=98.64 E-value=4.2e-07 Score=76.95 Aligned_cols=139 Identities=17% Similarity=0.189 Sum_probs=81.7
Q ss_pred CccccccchHHHHHHHh---cCCCC------CCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc--Ccc----------
Q 040354 27 NHLVGIESRTEEIESVL---GVGST------MNICKLGISGSGDIGKITIAGAIFNKITRRFEEF--PNI---------- 85 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l---~~~~~------~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~--~~~---------- 85 (172)
+++.|.++..+.+.+.+ ..... ..++-+.|+|++|+|||+||+.+++.....|-.. .++
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~~ 262 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAA 262 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHH
Confidence 45778776666655543 32111 1145799999999999999999998754443332 111
Q ss_pred -cHHHHHHHhCCCeeEEEEecCCCHH------------h----HHHHHhhccCC--CCCcEEEEEeCChhHHHh-c----
Q 040354 86 -GLNFQSKRLTRKKLLIVFDDVHHPR------------Q----IDCLIECLDWF--ASASRIIIISRDKQALIS-C---- 141 (172)
Q Consensus 86 -~~~~~~~~l~~~~~LlvlDdv~~~~------------~----~~~l~~~~~~~--~~~s~iiiTtr~~~~~~~-~---- 141 (172)
....+.......+++|++||++... . +..++..+... ..+..||.+|........ +
T Consensus 263 ~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpG 342 (638)
T CHL00176 263 RVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPG 342 (638)
T ss_pred HHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccc
Confidence 1223334445578999999996431 1 33333333222 234456666655432221 1
Q ss_pred CCCceEEcCCCCHHHHHHHHhhhc
Q 040354 142 GVNKIYQMQELVHADALKLFSECA 165 (172)
Q Consensus 142 ~~~~~~~l~~l~~~~~~~lf~~~a 165 (172)
.....+.+...+.++-.++++.++
T Consensus 343 RFd~~I~v~lPd~~~R~~IL~~~l 366 (638)
T CHL00176 343 RFDRQITVSLPDREGRLDILKVHA 366 (638)
T ss_pred cCceEEEECCCCHHHHHHHHHHHH
Confidence 123578888888888888877654
No 101
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.63 E-value=4e-07 Score=76.97 Aligned_cols=46 Identities=17% Similarity=0.211 Sum_probs=38.0
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
+.++|++..+..+.+.+.... ...+.|+|++|+||||||+.+++..
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~~---~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASPF---PQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred HhceeCcHHHHHHHHHHhcCC---CCeEEEECCCCCCHHHHHHHHHHhh
Confidence 568899999998877765333 4579999999999999999998764
No 102
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=98.61 E-value=9.2e-07 Score=76.77 Aligned_cols=136 Identities=18% Similarity=0.263 Sum_probs=78.7
Q ss_pred CccccccchHHHHHHHhcC----CCCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc-----Cc----------c--
Q 040354 27 NHLVGIESRTEEIESVLGV----GSTMNICKLGISGSGDIGKITIAGAIFNKITRRFEEF-----PN----------I-- 85 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~----~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~-----~~----------~-- 85 (172)
..++|.+...+.+.+++.. .... .+++.++|++|+|||++|+.+++.+...|... .+ .
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~-~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g 398 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMK-GPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVG 398 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCC-CceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeC
Confidence 3578888888888876641 1112 35899999999999999999999865544322 00 0
Q ss_pred -----cHHHHHHHhCCCeeEEEEecCCCHH------hHHHHHhhccC--------CC-------CCcEEEEEeCChhHH-
Q 040354 86 -----GLNFQSKRLTRKKLLIVFDDVHHPR------QIDCLIECLDW--------FA-------SASRIIIISRDKQAL- 138 (172)
Q Consensus 86 -----~~~~~~~~l~~~~~LlvlDdv~~~~------~~~~l~~~~~~--------~~-------~~s~iiiTtr~~~~~- 138 (172)
....+... ...+-+++||+++... ..+.++..+.. .. +...+|.||......
T Consensus 399 ~~~g~i~~~l~~~-~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~ 477 (775)
T TIGR00763 399 AMPGRIIQGLKKA-KTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIP 477 (775)
T ss_pred CCCchHHHHHHHh-CcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCchhCC
Confidence 11222222 2233478999997431 12333333221 00 123344455432211
Q ss_pred Hh-cCCCceEEcCCCCHHHHHHHHhhh
Q 040354 139 IS-CGVNKIYQMQELVHADALKLFSEC 164 (172)
Q Consensus 139 ~~-~~~~~~~~l~~l~~~~~~~lf~~~ 164 (172)
.. .....++++.+++.++..+++.++
T Consensus 478 ~~L~~R~~vi~~~~~~~~e~~~I~~~~ 504 (775)
T TIGR00763 478 RPLLDRMEVIELSGYTEEEKLEIAKKY 504 (775)
T ss_pred HHHhCCeeEEecCCCCHHHHHHHHHHH
Confidence 11 234468999999998888877654
No 103
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.61 E-value=3.7e-07 Score=79.69 Aligned_cols=51 Identities=20% Similarity=0.246 Sum_probs=42.8
Q ss_pred ccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhcc
Q 040354 28 HLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITRR 78 (172)
Q Consensus 28 ~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 78 (172)
.++||+.+++.|...+..-+.....++.+.|.+|||||+|++++..-+.+.
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~ 51 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQ 51 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhcc
Confidence 378999999999998885554446899999999999999999999885443
No 104
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.58 E-value=3.2e-06 Score=59.79 Aligned_cols=121 Identities=18% Similarity=0.228 Sum_probs=76.5
Q ss_pred cccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHH-hccccC---c----------------------C-
Q 040354 31 GIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKI-TRRFEE---F----------------------P- 83 (172)
Q Consensus 31 Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~-~~~f~~---~----------------------~- 83 (172)
|.+...+.|.+.+..+.- +..+.++|+.|+||+++|..++..+ ...-.. . +
T Consensus 1 gq~~~~~~L~~~~~~~~l--~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~ 78 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRL--PHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKK 78 (162)
T ss_dssp S-HHHHHHHHHHHHCTC----SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTS
T ss_pred CcHHHHHHHHHHHHcCCc--ceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccc
Confidence 456667777777775542 3688999999999999999999983 222110 0 1
Q ss_pred --cccHHHHHHHh---C-----CCeeEEEEecCC--CHHhHHHHHhhccCCCCCcEEEEEeCChh-HHHh-cCCCceEEc
Q 040354 84 --NIGLNFQSKRL---T-----RKKLLIVFDDVH--HPRQIDCLIECLDWFASASRIIIISRDKQ-ALIS-CGVNKIYQM 149 (172)
Q Consensus 84 --~~~~~~~~~~l---~-----~~~~LlvlDdv~--~~~~~~~l~~~~~~~~~~s~iiiTtr~~~-~~~~-~~~~~~~~l 149 (172)
++..+.+++.. . +..-++|+|+++ +.+..+.|+..+..-...+++|++|.+.. +... ......+.+
T Consensus 79 ~~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc~~i~~ 158 (162)
T PF13177_consen 79 KKSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRCQVIRF 158 (162)
T ss_dssp SSSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTSEEEEE
T ss_pred cchhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhceEEec
Confidence 23344444433 2 235689999997 45678999989887778898888887754 3333 345567777
Q ss_pred CCCC
Q 040354 150 QELV 153 (172)
Q Consensus 150 ~~l~ 153 (172)
.++|
T Consensus 159 ~~ls 162 (162)
T PF13177_consen 159 RPLS 162 (162)
T ss_dssp ----
T ss_pred CCCC
Confidence 7764
No 105
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=1.3e-06 Score=69.54 Aligned_cols=141 Identities=16% Similarity=0.171 Sum_probs=84.9
Q ss_pred CCCCccccccchHHHHHHHhcC-CCCCCeeEEEEEcCCCchHHHHHHHHHHHHhcc---cc--Cc---------------
Q 040354 24 ENNNHLVGIESRTEEIESVLGV-GSTMNICKLGISGSGDIGKITIAGAIFNKITRR---FE--EF--------------- 82 (172)
Q Consensus 24 ~~~~~~~Gr~~~~~~l~~~l~~-~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~---f~--~~--------------- 82 (172)
..++.+.+|+.+++.+...|.. -.+..+..+.|+|++|+|||+.++.+++++... .. ..
T Consensus 14 ~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i 93 (366)
T COG1474 14 YIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKI 93 (366)
T ss_pred CCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHH
Confidence 4556699999999999987762 112224559999999999999999999985544 21 11
Q ss_pred -------Cc--c----cHHHHHHHhC--CCeeEEEEecCCCHHhH--HHHHhhccCCCC-CcEE--EEEeCChhHHHh--
Q 040354 83 -------PN--I----GLNFQSKRLT--RKKLLIVFDDVHHPRQI--DCLIECLDWFAS-ASRI--IIISRDKQALIS-- 140 (172)
Q Consensus 83 -------~~--~----~~~~~~~~l~--~~~~LlvlDdv~~~~~~--~~l~~~~~~~~~-~s~i--iiTtr~~~~~~~-- 140 (172)
.. . ....+.+.+. ++.+++|||+++....- +.+...+.+... .++| |..+-+-++...
T Consensus 94 ~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld 173 (366)
T COG1474 94 LNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLD 173 (366)
T ss_pred HHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhh
Confidence 00 1 2333344443 36789999999744221 222222222222 3443 334444333222
Q ss_pred ------cCCCceEEcCCCCHHHHHHHHhhhc
Q 040354 141 ------CGVNKIYQMQELVHADALKLFSECA 165 (172)
Q Consensus 141 ------~~~~~~~~l~~l~~~~~~~lf~~~a 165 (172)
++..+ +..+|=+.+|-...+..++
T Consensus 174 ~rv~s~l~~~~-I~F~pY~a~el~~Il~~R~ 203 (366)
T COG1474 174 PRVKSSLGPSE-IVFPPYTAEELYDILRERV 203 (366)
T ss_pred hhhhhccCcce-eeeCCCCHHHHHHHHHHHH
Confidence 22333 6788888888888887664
No 106
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.56 E-value=2.5e-07 Score=62.68 Aligned_cols=82 Identities=20% Similarity=0.282 Sum_probs=50.1
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhc------cccCc-------------------------Cc---c--cHHHHHHHh
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKITR------RFEEF-------------------------PN---I--GLNFQSKRL 94 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~~------~f~~~-------------------------~~---~--~~~~~~~~l 94 (172)
.+.+.|+|++|+|||+++..+.+.... +.... .. . ....+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 478999999999999999999998532 11111 11 1 334555555
Q ss_pred CCC-eeEEEEecCCCH---HhHHHHHhhccCCCCCcEEEEEeCC
Q 040354 95 TRK-KLLIVFDDVHHP---RQIDCLIECLDWFASASRIIIISRD 134 (172)
Q Consensus 95 ~~~-~~LlvlDdv~~~---~~~~~l~~~~~~~~~~s~iiiTtr~ 134 (172)
... ..+||+|+++.. ..++.+..... ..+.++|+....
T Consensus 84 ~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 544 459999999765 23444433332 566778887765
No 107
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.56 E-value=6.2e-07 Score=73.91 Aligned_cols=138 Identities=17% Similarity=0.251 Sum_probs=82.2
Q ss_pred CccccccchHHHHHHHhcC-----------CCCCCeeEEEEEcCCCchHHHHHHHHHHHHhcc----------ccCc--C
Q 040354 27 NHLVGIESRTEEIESVLGV-----------GSTMNICKLGISGSGDIGKITIAGAIFNKITRR----------FEEF--P 83 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~-----------~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~----------f~~~--~ 83 (172)
+++.|.+..++.+.+.+.. +-.. ++-+.|+|++|+|||++|+.+++.+... |-.. .
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~-p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~ 260 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKP-PKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP 260 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCC-CcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch
Confidence 5577899888888776531 1112 5679999999999999999999985433 1111 0
Q ss_pred cc-------cHHHHH-------HHh-CCCeeEEEEecCCCHH---------h-----HHHHHhhccCCC--CCcEEEEEe
Q 040354 84 NI-------GLNFQS-------KRL-TRKKLLIVFDDVHHPR---------Q-----IDCLIECLDWFA--SASRIIIIS 132 (172)
Q Consensus 84 ~~-------~~~~~~-------~~l-~~~~~LlvlDdv~~~~---------~-----~~~l~~~~~~~~--~~s~iiiTt 132 (172)
++ ....++ ... .+.+++|+||+++... + ...++..+.... .+..||.||
T Consensus 261 eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~AT 340 (512)
T TIGR03689 261 ELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGAS 340 (512)
T ss_pred hhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEecc
Confidence 10 111111 111 2368999999997431 1 234443333222 233455555
Q ss_pred CChhHHH-hc----CCCceEEcCCCCHHHHHHHHhhhc
Q 040354 133 RDKQALI-SC----GVNKIYQMQELVHADALKLFSECA 165 (172)
Q Consensus 133 r~~~~~~-~~----~~~~~~~l~~l~~~~~~~lf~~~a 165 (172)
....... .+ .-...++++..+.++..++|.++.
T Consensus 341 N~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 341 NREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred CChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 4433221 11 124468999999999999998763
No 108
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.54 E-value=3.2e-06 Score=66.42 Aligned_cols=135 Identities=11% Similarity=0.118 Sum_probs=89.7
Q ss_pred cccc-ccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHH-hcc-cc---Cc-------------Cc----
Q 040354 28 HLVG-IESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKI-TRR-FE---EF-------------PN---- 84 (172)
Q Consensus 28 ~~~G-r~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~-~~~-f~---~~-------------~~---- 84 (172)
.++| .+...+.+.+.+..+.- ...+.++|+.|+||||+|+.+...+ ... .. +. .|
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~l--~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i 83 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNRL--SHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLV 83 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCCC--CceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEe
Confidence 4566 66677777777765542 4788999999999999999998884 221 00 00 11
Q ss_pred ------ccHHHHHHHh--------CCCeeEEEEecCCC--HHhHHHHHhhccCCCCCcEEEEEeCChh-HHHhc-CCCce
Q 040354 85 ------IGLNFQSKRL--------TRKKLLIVFDDVHH--PRQIDCLIECLDWFASASRIIIISRDKQ-ALISC-GVNKI 146 (172)
Q Consensus 85 ------~~~~~~~~~l--------~~~~~LlvlDdv~~--~~~~~~l~~~~~~~~~~s~iiiTtr~~~-~~~~~-~~~~~ 146 (172)
+..+.++... .+++-++|+|+++. ....+.|+..+..-.+.+.+|++|.+.. +...+ .....
T Consensus 84 ~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~~ 163 (329)
T PRK08058 84 APDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQV 163 (329)
T ss_pred ccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhcee
Confidence 1233333322 23456899999974 4567888888876667777777776543 33332 34568
Q ss_pred EEcCCCCHHHHHHHHhhh
Q 040354 147 YQMQELVHADALKLFSEC 164 (172)
Q Consensus 147 ~~l~~l~~~~~~~lf~~~ 164 (172)
+++.+++.++..+.+...
T Consensus 164 i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 164 VEFRPLPPESLIQRLQEE 181 (329)
T ss_pred eeCCCCCHHHHHHHHHHc
Confidence 999999999988877654
No 109
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.54 E-value=1.2e-06 Score=70.51 Aligned_cols=105 Identities=17% Similarity=0.244 Sum_probs=75.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhcc---ccCcCcc------cHHHHHHHhC---CCeeEEEEecCCCHHhHHHHHhhcc
Q 040354 53 KLGISGSGDIGKITIAGAIFNKITRR---FEEFPNI------GLNFQSKRLT---RKKLLIVFDDVHHPRQIDCLIECLD 120 (172)
Q Consensus 53 ~i~I~G~~GiGKTtLa~~~~~~~~~~---f~~~~~~------~~~~~~~~l~---~~~~LlvlDdv~~~~~~~~l~~~~~ 120 (172)
++.|+|+.++||||+++.+.....+. |.. .+. ..+.++.+.. .++..|+||+|.....|......+.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~-~d~~~~~~~l~d~~~~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~ 117 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINF-DDLRLDRIELLDLLRAYIELKEREKSYIFLDEIQNVPDWERALKYLY 117 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEe-cchhcchhhHHHHHHHHHHhhccCCceEEEecccCchhHHHHHHHHH
Confidence 99999999999999997777775443 111 111 3333333322 2567999999999999998888887
Q ss_pred CCCCCcEEEEEeCChhHHHh------cCCCceEEcCCCCHHHHHH
Q 040354 121 WFASASRIIIISRDKQALIS------CGVNKIYQMQELVHADALK 159 (172)
Q Consensus 121 ~~~~~s~iiiTtr~~~~~~~------~~~~~~~~l~~l~~~~~~~ 159 (172)
...+. +|++|+-+..+... .+....+++.||+..|...
T Consensus 118 d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~ 161 (398)
T COG1373 118 DRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLK 161 (398)
T ss_pred ccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHh
Confidence 66655 78888877654322 2455688999999999875
No 110
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=1.7e-06 Score=67.53 Aligned_cols=136 Identities=15% Similarity=0.216 Sum_probs=85.0
Q ss_pred ccccccchHHHHHHHhcCC-----------CCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc--Cc-----c--cH
Q 040354 28 HLVGIESRTEEIESVLGVG-----------STMNICKLGISGSGDIGKITIAGAIFNKITRRFEEF--PN-----I--GL 87 (172)
Q Consensus 28 ~~~Gr~~~~~~l~~~l~~~-----------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~--~~-----~--~~ 87 (172)
++=|-++++++|.+...-. -.+ ++=+.+||+||+|||-||++++++....|-.. +. + ..
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~P-PKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGa 230 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDP-PKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGA 230 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCC-CCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccch
Confidence 3446777777777655411 122 67899999999999999999999977777654 11 1 33
Q ss_pred HHHHHHh---CC-CeeEEEEecCCCHH----------------hHHHHHhhccCCCC--CcEEEEEeCChhHHHh-----
Q 040354 88 NFQSKRL---TR-KKLLIVFDDVHHPR----------------QIDCLIECLDWFAS--ASRIIIISRDKQALIS----- 140 (172)
Q Consensus 88 ~~~~~~l---~~-~~~LlvlDdv~~~~----------------~~~~l~~~~~~~~~--~s~iiiTtr~~~~~~~----- 140 (172)
..+++.+ +. .+++|++|+++... .+-+|+..+.-+.+ ..|||..|.-.+++..
T Consensus 231 RlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRP 310 (406)
T COG1222 231 RLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRP 310 (406)
T ss_pred HHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCC
Confidence 3333333 33 57999999996321 13345555554443 4578876654443322
Q ss_pred cCCCceEEcCCCCHHHHHHHHhhh
Q 040354 141 CGVNKIYQMQELVHADALKLFSEC 164 (172)
Q Consensus 141 ~~~~~~~~l~~l~~~~~~~lf~~~ 164 (172)
-..++.++++.-+.+.-.++|+=+
T Consensus 311 GR~DRkIEfplPd~~gR~~Il~IH 334 (406)
T COG1222 311 GRFDRKIEFPLPDEEGRAEILKIH 334 (406)
T ss_pred CcccceeecCCCCHHHHHHHHHHH
Confidence 124567888866666666666533
No 111
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.48 E-value=1.3e-06 Score=65.22 Aligned_cols=93 Identities=19% Similarity=0.263 Sum_probs=62.4
Q ss_pred CCCCccccccchHHHHHH----HhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhcc-ccCc----Ccc-cHHHHHHH
Q 040354 24 ENNNHLVGIESRTEEIES----VLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITRR-FEEF----PNI-GLNFQSKR 93 (172)
Q Consensus 24 ~~~~~~~Gr~~~~~~l~~----~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~-f~~~----~~~-~~~~~~~~ 93 (172)
..-+.++|.+.+.+.|.+ ++.... ..-+.+||..|+|||++++++.+..... ...+ +++ ....+...
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~p---annvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~l~~l~~~ 100 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQGLP---ANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGDLPELLDL 100 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHcCCC---CcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhccHHHHHHH
Confidence 445789999988887755 333222 5788899999999999999999985443 2221 333 34444444
Q ss_pred hCC--CeeEEEEecCC---CHHhHHHHHhhc
Q 040354 94 LTR--KKLLIVFDDVH---HPRQIDCLIECL 119 (172)
Q Consensus 94 l~~--~~~LlvlDdv~---~~~~~~~l~~~~ 119 (172)
+++ .+++|++||+. +...+..|...+
T Consensus 101 l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~L 131 (249)
T PF05673_consen 101 LRDRPYKFILFCDDLSFEEGDTEYKALKSVL 131 (249)
T ss_pred HhcCCCCEEEEecCCCCCCCcHHHHHHHHHh
Confidence 443 68999999993 444566665544
No 112
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.47 E-value=7.2e-06 Score=64.03 Aligned_cols=135 Identities=14% Similarity=0.214 Sum_probs=92.5
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHH-hcc------------ccCcCc---------
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKI-TRR------------FEEFPN--------- 84 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~-~~~------------f~~~~~--------- 84 (172)
+.++|.+...+.+.+.+..+.- ...+.++|+.|+||+++|..++..+ ... +.+ +|
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl--~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h-PDl~~i~p~~~ 80 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRI--APAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH-PDLLWVEPTYQ 80 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCC--CceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC-CCEEEEecccc
Confidence 4578999999999998886653 3799999999999999999998883 221 111 11
Q ss_pred -----------------------ccHHHHHHH---h-----CCCeeEEEEecCC--CHHhHHHHHhhccCCCCCcEEEEE
Q 040354 85 -----------------------IGLNFQSKR---L-----TRKKLLIVFDDVH--HPRQIDCLIECLDWFASASRIIII 131 (172)
Q Consensus 85 -----------------------~~~~~~~~~---l-----~~~~~LlvlDdv~--~~~~~~~l~~~~~~~~~~s~iiiT 131 (172)
+..+.+++. + .+++-++|+|+++ +....+.++..+..-. .+.+|++
T Consensus 81 ~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi 159 (314)
T PRK07399 81 HQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILI 159 (314)
T ss_pred ccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEE
Confidence 112233333 3 2356789999997 4456788888876544 4555555
Q ss_pred eCC-hhHHHhc-CCCceEEcCCCCHHHHHHHHhhhc
Q 040354 132 SRD-KQALISC-GVNKIYQMQELVHADALKLFSECA 165 (172)
Q Consensus 132 tr~-~~~~~~~-~~~~~~~l~~l~~~~~~~lf~~~a 165 (172)
|.+ ..+...+ .....+++.+++.++..+.+.+..
T Consensus 160 ~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~ 195 (314)
T PRK07399 160 APSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLG 195 (314)
T ss_pred ECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhh
Confidence 544 3444433 355689999999999999888763
No 113
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=8.7e-07 Score=74.47 Aligned_cols=140 Identities=21% Similarity=0.276 Sum_probs=86.7
Q ss_pred CCCccccccchHHHHHHHhc----CCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc---------------Cc-
Q 040354 25 NNNHLVGIESRTEEIESVLG----VGSTMNICKLGISGSGDIGKITIAGAIFNKITRRFEEF---------------PN- 84 (172)
Q Consensus 25 ~~~~~~Gr~~~~~~l~~~l~----~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~---------------~~- 84 (172)
.+++.+|.++..++|.+++. ..+.+ -+++.++||+|+|||.+|+.++..+.+.|-.. ..
T Consensus 409 LdeDHYgm~dVKeRILEfiAV~kLrgs~q-GkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTY 487 (906)
T KOG2004|consen 409 LDEDHYGMEDVKERILEFIAVGKLRGSVQ-GKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTY 487 (906)
T ss_pred hcccccchHHHHHHHHHHHHHHhhcccCC-CcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceee
Confidence 34578999999999999886 22223 58999999999999999999999977765443 11
Q ss_pred c--cHHHHHHHhC---CCeeEEEEecCCCHH------hHHHHHhhcc------------CCC-CCcEEEEEe-CC-hhHH
Q 040354 85 I--GLNFQSKRLT---RKKLLIVFDDVHHPR------QIDCLIECLD------------WFA-SASRIIIIS-RD-KQAL 138 (172)
Q Consensus 85 ~--~~~~~~~~l~---~~~~LlvlDdv~~~~------~~~~l~~~~~------------~~~-~~s~iiiTt-r~-~~~~ 138 (172)
+ ....+-++|+ ..+-|+.+|+|+... --..++..++ .-. .=|+|++.+ -| -+..
T Consensus 488 VGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtI 567 (906)
T KOG2004|consen 488 VGAMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTI 567 (906)
T ss_pred eccCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEEEEeccccccC
Confidence 1 3444555554 356688899997431 1122222211 111 235655432 22 1111
Q ss_pred --HhcCCCceEEcCCCCHHHHHHHHhhhc
Q 040354 139 --ISCGVNKIYQMQELVHADALKLFSECA 165 (172)
Q Consensus 139 --~~~~~~~~~~l~~l~~~~~~~lf~~~a 165 (172)
......++++|.+-..+|-.++-.++-
T Consensus 568 P~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 568 PPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred ChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 112355789999998888777655543
No 114
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.46 E-value=4.3e-06 Score=72.28 Aligned_cols=138 Identities=12% Similarity=0.269 Sum_probs=83.3
Q ss_pred CCccccccchHHHHHHHhcC------CCCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc------C----------
Q 040354 26 NNHLVGIESRTEEIESVLGV------GSTMNICKLGISGSGDIGKITIAGAIFNKITRRFEEF------P---------- 83 (172)
Q Consensus 26 ~~~~~Gr~~~~~~l~~~l~~------~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~------~---------- 83 (172)
...++|.+..++.+.+.+.. .......++.++|++|+|||+||+.++..+...|... +
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~ 532 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGA 532 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcC
Confidence 45688999888888887662 1112245789999999999999999998864332111 0
Q ss_pred ---cc---cHHHHHHHhCCC-eeEEEEecCCC--HHhHHHHHhhccCCC-----------CCcEEEEEeCChh--H----
Q 040354 84 ---NI---GLNFQSKRLTRK-KLLIVFDDVHH--PRQIDCLIECLDWFA-----------SASRIIIISRDKQ--A---- 137 (172)
Q Consensus 84 ---~~---~~~~~~~~l~~~-~~LlvlDdv~~--~~~~~~l~~~~~~~~-----------~~s~iiiTtr~~~--~---- 137 (172)
.. ....+.+.+..+ ..+++||+++. .+.++.|+..+.... ..+-||+||.... +
T Consensus 533 ~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~ 612 (731)
T TIGR02639 533 PPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPP 612 (731)
T ss_pred CCCCcccchhhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhhhhcc
Confidence 00 011233444333 46999999973 445666665554321 2244666663210 0
Q ss_pred ----------------HHhc-----C-CCceEEcCCCCHHHHHHHHhh
Q 040354 138 ----------------LISC-----G-VNKIYQMQELVHADALKLFSE 163 (172)
Q Consensus 138 ----------------~~~~-----~-~~~~~~l~~l~~~~~~~lf~~ 163 (172)
.... + .+.++.+.+|+.++..+++..
T Consensus 613 ~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~ 660 (731)
T TIGR02639 613 IGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQK 660 (731)
T ss_pred CCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHH
Confidence 0001 1 235788999999988887654
No 115
>PRK08116 hypothetical protein; Validated
Probab=98.44 E-value=9.5e-07 Score=67.48 Aligned_cols=83 Identities=19% Similarity=0.268 Sum_probs=47.7
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhcc-ccCc----Ccc--------------cHHHHHHHhCCCeeEEEEecCC--CHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKITRR-FEEF----PNI--------------GLNFQSKRLTRKKLLIVFDDVH--HPR 110 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~~~~-f~~~----~~~--------------~~~~~~~~l~~~~~LlvlDdv~--~~~ 110 (172)
..+.|+|.+|+|||+||.++++.+..+ .... .++ ....+.+.+.+- =||||||+. ...
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~-dlLviDDlg~e~~t 193 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVNA-DLLILDDLGAERDT 193 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcCC-CEEEEecccCCCCC
Confidence 468999999999999999999995433 1111 111 011122223333 389999993 222
Q ss_pred hH--HHHHhhccC-CCCCcEEEEEeCCh
Q 040354 111 QI--DCLIECLDW-FASASRIIIISRDK 135 (172)
Q Consensus 111 ~~--~~l~~~~~~-~~~~s~iiiTtr~~ 135 (172)
.| ..+...+.. ...+..+|+||...
T Consensus 194 ~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 194 EWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 23 233333321 22455688888753
No 116
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.43 E-value=3.8e-06 Score=72.61 Aligned_cols=137 Identities=15% Similarity=0.196 Sum_probs=81.4
Q ss_pred CccccccchHHHHHHHhcC-----------CCCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc--Cc-----c--c
Q 040354 27 NHLVGIESRTEEIESVLGV-----------GSTMNICKLGISGSGDIGKITIAGAIFNKITRRFEEF--PN-----I--G 86 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~-----------~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~--~~-----~--~ 86 (172)
.++.|.+...+.|.+.+.. .-.. ++-+.++|++|+|||++|+.+++....+|-.. .+ . .
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~-~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGes 531 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRP-PKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGES 531 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCC-CceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcH
Confidence 3456777666666654431 1112 45689999999999999999999865555433 11 1 1
Q ss_pred HHHHHHH----hCCCeeEEEEecCCCH--------------HhHHHHHhhccCCC--CCcEEEEEeCChhHHH-hc----
Q 040354 87 LNFQSKR----LTRKKLLIVFDDVHHP--------------RQIDCLIECLDWFA--SASRIIIISRDKQALI-SC---- 141 (172)
Q Consensus 87 ~~~~~~~----l~~~~~LlvlDdv~~~--------------~~~~~l~~~~~~~~--~~s~iiiTtr~~~~~~-~~---- 141 (172)
...++.. -...+.+|+||+++.. .....++..+.... .+.-||.||...+... .+
T Consensus 532 e~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpg 611 (733)
T TIGR01243 532 EKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPG 611 (733)
T ss_pred HHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCC
Confidence 2223333 2346799999999632 11333444443222 2344555665443332 11
Q ss_pred CCCceEEcCCCCHHHHHHHHhhh
Q 040354 142 GVNKIYQMQELVHADALKLFSEC 164 (172)
Q Consensus 142 ~~~~~~~l~~l~~~~~~~lf~~~ 164 (172)
.....+.++..+.++-.++|...
T Consensus 612 Rfd~~i~v~~Pd~~~R~~i~~~~ 634 (733)
T TIGR01243 612 RFDRLILVPPPDEEARKEIFKIH 634 (733)
T ss_pred ccceEEEeCCcCHHHHHHHHHHH
Confidence 23467889999999888888644
No 117
>PRK08181 transposase; Validated
Probab=98.40 E-value=8.5e-07 Score=67.67 Aligned_cols=25 Identities=28% Similarity=0.206 Sum_probs=22.5
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
..+.|+|++|+|||+||..+.+...
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~ 131 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALI 131 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHH
Confidence 5699999999999999999998843
No 118
>PTZ00202 tuzin; Provisional
Probab=98.39 E-value=1.3e-06 Score=70.46 Aligned_cols=52 Identities=17% Similarity=0.111 Sum_probs=43.6
Q ss_pred CCCCccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 24 ENNNHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 24 ~~~~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
.....|+||+.++..|...|...+...++++.|.|++|+|||||++.+....
T Consensus 259 a~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l 310 (550)
T PTZ00202 259 AVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE 310 (550)
T ss_pred CCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC
Confidence 6678999999999999999974333325799999999999999999988763
No 119
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.39 E-value=4e-06 Score=63.66 Aligned_cols=139 Identities=17% Similarity=0.206 Sum_probs=83.1
Q ss_pred CccccccchHHHHHHHhc--CCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc--Ccc-cHHHHHHHhCC--Cee
Q 040354 27 NHLVGIESRTEEIESVLG--VGSTMNICKLGISGSGDIGKITIAGAIFNKITRRFEEF--PNI-GLNFQSKRLTR--KKL 99 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~--~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~--~~~-~~~~~~~~l~~--~~~ 99 (172)
.+|+|.++..+++.=++. ...++..-=+.++|++|.||||||.-+++++..++... +-+ -...+...|.+ ..=
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~gDlaaiLt~Le~~D 105 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKPGDLAAILTNLEEGD 105 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccChhhHHHHHhcCCcCC
Confidence 789999998888877776 22222256789999999999999999999987776554 112 23333333332 345
Q ss_pred EEEEecCCCHH--hHHHHHhhccCC--------CCCcE-----------EEEEeCChhHHHhcC--CCceEEcCCCCHHH
Q 040354 100 LIVFDDVHHPR--QIDCLIECLDWF--------ASASR-----------IIIISRDKQALISCG--VNKIYQMQELVHAD 156 (172)
Q Consensus 100 LlvlDdv~~~~--~~~~l~~~~~~~--------~~~s~-----------iiiTtr~~~~~~~~~--~~~~~~l~~l~~~~ 156 (172)
+|++|+++... --+.+.+.+..+ ++++| |=-|||-.-+...+. -.-+.+++--+.+|
T Consensus 106 VLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~e 185 (332)
T COG2255 106 VLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEE 185 (332)
T ss_pred eEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccccccchhHHhcCCeeeeecCCHHH
Confidence 67789997432 222333333222 13333 224777543332221 12345677777777
Q ss_pred HHHHHhhhc
Q 040354 157 ALKLFSECA 165 (172)
Q Consensus 157 ~~~lf~~~a 165 (172)
-.++..+.|
T Consensus 186 L~~Iv~r~a 194 (332)
T COG2255 186 LEEIVKRSA 194 (332)
T ss_pred HHHHHHHHH
Confidence 766665544
No 120
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.38 E-value=1e-05 Score=63.48 Aligned_cols=114 Identities=11% Similarity=0.145 Sum_probs=77.4
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH-hcc---ccCc----------------------C----cccHHHHHHHh------
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI-TRR---FEEF----------------------P----NIGLNFQSKRL------ 94 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~-~~~---f~~~----------------------~----~~~~~~~~~~l------ 94 (172)
...+.++|+.|+|||++|+.++..+ +.+ .... + .+..+.+++..
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~~ 101 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQT 101 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhhc
Confidence 5788999999999999999999883 221 0000 1 12334444433
Q ss_pred --CCCeeEEEEecCC--CHHhHHHHHhhccCCCCCcEEEEEeCChh-HHHh-cCCCceEEcCCCCHHHHHHHHhhh
Q 040354 95 --TRKKLLIVFDDVH--HPRQIDCLIECLDWFASASRIIIISRDKQ-ALIS-CGVNKIYQMQELVHADALKLFSEC 164 (172)
Q Consensus 95 --~~~~~LlvlDdv~--~~~~~~~l~~~~~~~~~~s~iiiTtr~~~-~~~~-~~~~~~~~l~~l~~~~~~~lf~~~ 164 (172)
.+++-++|+|+++ +....+.++..+..-..++.+|++|.+.. +... ......+++.+++.+++.+.+...
T Consensus 102 ~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~ 177 (328)
T PRK05707 102 AQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQA 177 (328)
T ss_pred cccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHh
Confidence 1334456789997 55678888888876556777777777653 3333 234567999999999999888764
No 121
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.37 E-value=3.7e-06 Score=72.68 Aligned_cols=138 Identities=12% Similarity=0.132 Sum_probs=79.5
Q ss_pred CccccccchHHHHHHHhcCC----------CCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc------Ccc-----
Q 040354 27 NHLVGIESRTEEIESVLGVG----------STMNICKLGISGSGDIGKITIAGAIFNKITRRFEEF------PNI----- 85 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~----------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~------~~~----- 85 (172)
+++.|.+..++.+.+++... .-...+.+.|+|++|+|||+||+.+++.....|-.. ...
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~~g~~~ 257 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYYGESE 257 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcccccHHH
Confidence 45779998888887766311 001146789999999999999999999865544322 111
Q ss_pred --cHHHHHHHhCCCeeEEEEecCCCH-------------HhHHHHHhhccCCC-CCcEEEE-EeCChh-HHHhc----CC
Q 040354 86 --GLNFQSKRLTRKKLLIVFDDVHHP-------------RQIDCLIECLDWFA-SASRIII-ISRDKQ-ALISC----GV 143 (172)
Q Consensus 86 --~~~~~~~~l~~~~~LlvlDdv~~~-------------~~~~~l~~~~~~~~-~~s~iii-Ttr~~~-~~~~~----~~ 143 (172)
+...+.......+.+|+||+++.. .....+...+.... .+..+++ +|.... +...+ ..
T Consensus 258 ~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~gRf 337 (733)
T TIGR01243 258 ERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRF 337 (733)
T ss_pred HHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCchhc
Confidence 222333333446689999998532 11233443333222 2333444 444332 11111 12
Q ss_pred CceEEcCCCCHHHHHHHHhhh
Q 040354 144 NKIYQMQELVHADALKLFSEC 164 (172)
Q Consensus 144 ~~~~~l~~l~~~~~~~lf~~~ 164 (172)
...+.+...+.++..+++...
T Consensus 338 d~~i~i~~P~~~~R~~Il~~~ 358 (733)
T TIGR01243 338 DREIVIRVPDKRARKEILKVH 358 (733)
T ss_pred cEEEEeCCcCHHHHHHHHHHH
Confidence 346778888888877777643
No 122
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=98.37 E-value=8.8e-06 Score=61.98 Aligned_cols=123 Identities=15% Similarity=0.159 Sum_probs=68.9
Q ss_pred HHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc---Ccc-cHHHH---------------------
Q 040354 36 TEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITRRFEEF---PNI-GLNFQ--------------------- 90 (172)
Q Consensus 36 ~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~---~~~-~~~~~--------------------- 90 (172)
++++..++..+ ..+.|+|++|+|||+||+.++......|... +++ ..+.+
T Consensus 11 ~~~~l~~l~~g-----~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~ 85 (262)
T TIGR02640 11 TSRALRYLKSG-----YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVK 85 (262)
T ss_pred HHHHHHHHhcC-----CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhh
Confidence 44444444432 4677999999999999999998654433221 111 01000
Q ss_pred --------------HHHhCCCeeEEEEecCCC--HHhHHHHHhhccC----------------CCCCcEEEEEeCChhHH
Q 040354 91 --------------SKRLTRKKLLIVFDDVHH--PRQIDCLIECLDW----------------FASASRIIIISRDKQAL 138 (172)
Q Consensus 91 --------------~~~l~~~~~LlvlDdv~~--~~~~~~l~~~~~~----------------~~~~s~iiiTtr~~~~~ 138 (172)
.... .+...|++|+++. .+....|...+.. ..+..+||+|+......
T Consensus 86 ~~~~~~~~~~~g~l~~A~-~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~ 164 (262)
T TIGR02640 86 LEDIVRQNWVDNRLTLAV-REGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYA 164 (262)
T ss_pred hhcccceeecCchHHHHH-HcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCcccc
Confidence 0011 1236889999974 4445555544421 11356788888753211
Q ss_pred ------H-hcCCCceEEcCCCCHHHHHHHHhhh
Q 040354 139 ------I-SCGVNKIYQMQELVHADALKLFSEC 164 (172)
Q Consensus 139 ------~-~~~~~~~~~l~~l~~~~~~~lf~~~ 164 (172)
. .......+.+.-.+.++-.+++..+
T Consensus 165 g~~~l~~aL~~R~~~i~i~~P~~~~e~~Il~~~ 197 (262)
T TIGR02640 165 GVHETQDALLDRLITIFMDYPDIDTETAILRAK 197 (262)
T ss_pred ceecccHHHHhhcEEEECCCCCHHHHHHHHHHh
Confidence 0 1112235677777877777777665
No 123
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.35 E-value=2.8e-06 Score=69.87 Aligned_cols=135 Identities=19% Similarity=0.274 Sum_probs=92.7
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHH-hcc---ccCc--------------------
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKI-TRR---FEEF-------------------- 82 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~-~~~---f~~~-------------------- 82 (172)
.+++|.+...+.|.+.+....- .....++|+.|+||||+|+.++..+ +.+ ...+
T Consensus 16 ~evvGQe~v~~~L~nal~~~ri--~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~DviEi 93 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGRI--AHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDVIEI 93 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCcc--hhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcccchhh
Confidence 5679999999999998886653 3678899999999999999998873 222 1111
Q ss_pred ---CcccHHHHHHHhC--------CCeeEEEEecCC--CHHhHHHHHhhccCCCCCcEEEEEeCChh-HHHh-cCCCceE
Q 040354 83 ---PNIGLNFQSKRLT--------RKKLLIVFDDVH--HPRQIDCLIECLDWFASASRIIIISRDKQ-ALIS-CGVNKIY 147 (172)
Q Consensus 83 ---~~~~~~~~~~~l~--------~~~~LlvlDdv~--~~~~~~~l~~~~~~~~~~s~iiiTtr~~~-~~~~-~~~~~~~ 147 (172)
++-..+.+++... ++.-++|+|+|+ +...|+.++..+..-.+....|+.|.+.+ +... +.....|
T Consensus 94 DaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlSRcq~f 173 (515)
T COG2812 94 DAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILSRCQRF 173 (515)
T ss_pred hhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhhhccccc
Confidence 1114555555543 234588999997 55679999988876555666566555543 2222 3455678
Q ss_pred EcCCCCHHHHHHHHhh
Q 040354 148 QMQELVHADALKLFSE 163 (172)
Q Consensus 148 ~l~~l~~~~~~~lf~~ 163 (172)
.++.++.++....+..
T Consensus 174 ~fkri~~~~I~~~L~~ 189 (515)
T COG2812 174 DFKRLDLEEIAKHLAA 189 (515)
T ss_pred cccCCCHHHHHHHHHH
Confidence 9999998877765554
No 124
>PRK12377 putative replication protein; Provisional
Probab=98.34 E-value=2.1e-06 Score=64.78 Aligned_cols=28 Identities=29% Similarity=0.351 Sum_probs=24.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhcc
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKITRR 78 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 78 (172)
...+.|+|++|+|||+||.++++.+..+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~ 128 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAK 128 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3689999999999999999999995443
No 125
>CHL00195 ycf46 Ycf46; Provisional
Probab=98.33 E-value=6.4e-06 Score=67.85 Aligned_cols=115 Identities=14% Similarity=0.131 Sum_probs=68.7
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhccccCc------Cc-c--cHHHHHHHh----CCCeeEEEEecCCCHH-------
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKITRRFEEF------PN-I--GLNFQSKRL----TRKKLLIVFDDVHHPR------- 110 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~------~~-~--~~~~~~~~l----~~~~~LlvlDdv~~~~------- 110 (172)
++-+.++|++|+|||.+|+.+++...-.|-.. .. . ....+++.+ ...+++|+||+++...
T Consensus 259 pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~ 338 (489)
T CHL00195 259 PRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKG 338 (489)
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCC
Confidence 57799999999999999999999865443222 11 1 122333333 3478999999997321
Q ss_pred ---h----HHHHHhhccCCCCCcEEEEEeCChhHH-Hhc----CCCceEEcCCCCHHHHHHHHhhhc
Q 040354 111 ---Q----IDCLIECLDWFASASRIIIISRDKQAL-ISC----GVNKIYQMQELVHADALKLFSECA 165 (172)
Q Consensus 111 ---~----~~~l~~~~~~~~~~s~iiiTtr~~~~~-~~~----~~~~~~~l~~l~~~~~~~lf~~~a 165 (172)
. ...+...+.....+-.||.||.+.+.. ..+ .-+..+.+..-+.++-.++|..+.
T Consensus 339 d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l 405 (489)
T CHL00195 339 DSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHL 405 (489)
T ss_pred CchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHH
Confidence 1 122222222222334455666554322 111 234578888889988888887553
No 126
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.32 E-value=1.5e-06 Score=59.70 Aligned_cols=101 Identities=18% Similarity=0.178 Sum_probs=60.3
Q ss_pred ccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhc---cccCcC--cccHHHHHHHhCCCeeEEEEe
Q 040354 30 VGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITR---RFEEFP--NIGLNFQSKRLTRKKLLIVFD 104 (172)
Q Consensus 30 ~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~---~f~~~~--~~~~~~~~~~l~~~~~LlvlD 104 (172)
+|.-..++++.+.+..-... ...|.|+|.+|+||+++|+.++..-.. .|.... +...+.+... +.-.|+++
T Consensus 1 vG~S~~~~~l~~~l~~~a~~-~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~~~~l~~a---~~gtL~l~ 76 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKS-SSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLPAELLEQA---KGGTLYLK 76 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCS-SS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTCHHHHHHC---TTSEEEEE
T ss_pred CCCCHHHHHHHHHHHHHhCC-CCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCcHHHHHHc---CCCEEEEC
Confidence 45556666666655532222 367899999999999999999887332 233221 1122322222 55678899
Q ss_pred cCCCH--HhHHHHHhhccCC-CCCcEEEEEeCC
Q 040354 105 DVHHP--RQIDCLIECLDWF-ASASRIIIISRD 134 (172)
Q Consensus 105 dv~~~--~~~~~l~~~~~~~-~~~s~iiiTtr~ 134 (172)
|++.. +....+...+... ....|+|.|+..
T Consensus 77 ~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~ 109 (138)
T PF14532_consen 77 NIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQ 109 (138)
T ss_dssp CGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC
T ss_pred ChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 99744 4455555455432 456799999874
No 127
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.32 E-value=9.9e-06 Score=63.81 Aligned_cols=51 Identities=22% Similarity=0.268 Sum_probs=43.3
Q ss_pred CCCccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 25 NNNHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 25 ~~~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
..+.+.+|+.+++.+..++...+..-+..+.|+|.+|+|||.+.+.+.+..
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~ 54 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL 54 (438)
T ss_pred cccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc
Confidence 456788999999999999986655435667999999999999999999985
No 128
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.32 E-value=2.5e-06 Score=59.58 Aligned_cols=28 Identities=29% Similarity=0.405 Sum_probs=24.8
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhcc
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKITRR 78 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 78 (172)
...++|+|++|+||||++..+.+.+++.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~ 32 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREK 32 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhc
Confidence 4679999999999999999999986655
No 129
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.32 E-value=2e-06 Score=63.74 Aligned_cols=102 Identities=18% Similarity=0.258 Sum_probs=64.8
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhc-cccCc------Ccc-----cHHHHHHHh
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITR-RFEEF------PNI-----GLNFQSKRL 94 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~-~f~~~------~~~-----~~~~~~~~l 94 (172)
.++||.++.++++.-...++. .+-+.|.||||+||||-+..++..+.. .+... +|- ....++.+.
T Consensus 27 ~dIVGNe~tv~rl~via~~gn---mP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~IK~FA 103 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEGN---MPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKIKMFA 103 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcCC---CCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHHHHHHH
Confidence 679999999999887776554 678999999999999988888777332 22211 111 223333222
Q ss_pred -------CCCeeEEEEecCCCHHh--HHHHHhhccCCCCCcEEEEE
Q 040354 95 -------TRKKLLIVFDDVHHPRQ--IDCLIECLDWFASASRIIII 131 (172)
Q Consensus 95 -------~~~~~LlvlDdv~~~~~--~~~l~~~~~~~~~~s~iiiT 131 (172)
.++.-++|||+.++... ...+.......++.+|..+.
T Consensus 104 Q~kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEiyS~ttRFala 149 (333)
T KOG0991|consen 104 QKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALA 149 (333)
T ss_pred HhhccCCCCceeEEEeeccchhhhHHHHHHHHHHHHHcccchhhhh
Confidence 24456899999987533 34445444444455554443
No 130
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=6.9e-06 Score=70.33 Aligned_cols=132 Identities=13% Similarity=0.121 Sum_probs=83.7
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHh-ccccCc---------------------Cc
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKIT-RRFEEF---------------------PN 84 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~-~~f~~~---------------------~~ 84 (172)
+.++||++|++++.+.|...... .-.++|.+|+|||+++.-++..+- ..-+.. .+
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KN---NPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGe 246 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKN---NPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGE 246 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCC---CCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCc
Confidence 46899999999999999865543 445789999999999998888743 322221 12
Q ss_pred c---cHHHHHHHhCCCeeEEEEecCCC-----------HHhHHHHHhhccCCCCCcEEEEEeCChhHHHhc-------CC
Q 040354 85 I---GLNFQSKRLTRKKLLIVFDDVHH-----------PRQIDCLIECLDWFASASRIIIISRDKQALISC-------GV 143 (172)
Q Consensus 85 ~---~~~~~~~~l~~~~~LlvlDdv~~-----------~~~~~~l~~~~~~~~~~s~iiiTtr~~~~~~~~-------~~ 143 (172)
+ +...+.+.-...+.+|++|+++. .+.-+.+.+.+.+. .--+|=.||-++. -..+ ..
T Consensus 247 FEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARG-eL~~IGATT~~EY-Rk~iEKD~AL~RR 324 (786)
T COG0542 247 FEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARG-ELRCIGATTLDEY-RKYIEKDAALERR 324 (786)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcC-CeEEEEeccHHHH-HHHhhhchHHHhc
Confidence 2 22333333334589999999951 23344555555421 1123555665432 1111 23
Q ss_pred CceEEcCCCCHHHHHHHHhh
Q 040354 144 NKIYQMQELVHADALKLFSE 163 (172)
Q Consensus 144 ~~~~~l~~l~~~~~~~lf~~ 163 (172)
.+.+.+...+.+++..++..
T Consensus 325 FQ~V~V~EPs~e~ti~ILrG 344 (786)
T COG0542 325 FQKVLVDEPSVEDTIAILRG 344 (786)
T ss_pred CceeeCCCCCHHHHHHHHHH
Confidence 45788999999999998764
No 131
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=98.31 E-value=1.2e-05 Score=67.07 Aligned_cols=45 Identities=18% Similarity=0.296 Sum_probs=37.0
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHH
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
+.++|.+..++.+...+.... ...+.|+|++|+|||++|+.+++.
T Consensus 65 ~~iiGqs~~i~~l~~al~~~~---~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGPN---PQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCCC---CceEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999887765433 356789999999999999999875
No 132
>PRK06526 transposase; Provisional
Probab=98.30 E-value=2.8e-06 Score=64.39 Aligned_cols=26 Identities=15% Similarity=0.057 Sum_probs=22.7
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
...+.|+|++|+|||+||..+.....
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~ 123 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRAC 123 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHH
Confidence 36799999999999999999988743
No 133
>PRK10536 hypothetical protein; Provisional
Probab=98.29 E-value=7.1e-06 Score=61.90 Aligned_cols=43 Identities=12% Similarity=0.074 Sum_probs=34.8
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHH
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
..+.++......+..++.. ...+.+.|++|+|||+||.++..+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~-----~~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES-----KQLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred ccccCCCHHHHHHHHHHhc-----CCeEEEECCCCCCHHHHHHHHHHH
Confidence 3456788888888887754 249999999999999999998885
No 134
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.29 E-value=1e-05 Score=59.13 Aligned_cols=86 Identities=13% Similarity=0.143 Sum_probs=58.3
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhccccCc-------------------------Cc-c-cHHHHHHHhCCCeeEEEEe
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKITRRFEEF-------------------------PN-I-GLNFQSKRLTRKKLLIVFD 104 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~-------------------------~~-~-~~~~~~~~l~~~~~LlvlD 104 (172)
.++.|+|++|+||||++..++..+....... .+ . ....++..+...+-++++|
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~g 81 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVG 81 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEc
Confidence 5789999999999999998887754221110 01 1 3455666677778899999
Q ss_pred cCCCHHhHHHHHhhccCCCCCcEEEEEeCChhHHHh
Q 040354 105 DVHHPRQIDCLIECLDWFASASRIIIISRDKQALIS 140 (172)
Q Consensus 105 dv~~~~~~~~l~~~~~~~~~~s~iiiTtr~~~~~~~ 140 (172)
++-+.+.+........ .|..++.|++..+....
T Consensus 82 Eird~e~~~~~l~~a~---~G~~v~~t~Ha~~~~~~ 114 (198)
T cd01131 82 EMRDLETIRLALTAAE---TGHLVMSTLHTNSAAKT 114 (198)
T ss_pred CCCCHHHHHHHHHHHH---cCCEEEEEecCCcHHHH
Confidence 9987776655443332 45568888887765544
No 135
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.25 E-value=1.5e-06 Score=68.45 Aligned_cols=54 Identities=13% Similarity=0.129 Sum_probs=43.0
Q ss_pred CCCCccccccchHHHHHHHhcCCC---CCCeeEEEEEcCCCchHHHHHHHHHHHHhc
Q 040354 24 ENNNHLVGIESRTEEIESVLGVGS---TMNICKLGISGSGDIGKITIAGAIFNKITR 77 (172)
Q Consensus 24 ~~~~~~~Gr~~~~~~l~~~l~~~~---~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~ 77 (172)
...++++|.++.++++.+++.... ....+++.|+|++|+||||||+.+.+.+..
T Consensus 48 ~F~~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 48 FFDHDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred ccchhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 344589999999999999887321 222588999999999999999999988543
No 136
>PRK09183 transposase/IS protein; Provisional
Probab=98.24 E-value=3.4e-06 Score=64.12 Aligned_cols=23 Identities=22% Similarity=0.263 Sum_probs=21.0
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
..+.|+|++|+|||+||..+...
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHH
Confidence 57889999999999999999876
No 137
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=2.3e-05 Score=64.25 Aligned_cols=112 Identities=16% Similarity=0.219 Sum_probs=70.8
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhccccCc-----Ccc-----------cHHHHHHHhCCCeeEEEEecCCCHHhH--
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKITRRFEEF-----PNI-----------GLNFQSKRLTRKKLLIVFDDVHHPRQI-- 112 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~-----~~~-----------~~~~~~~~l~~~~~LlvlDdv~~~~~~-- 112 (172)
...+.+.|++|+|||+||..++.. +.|+.+ +++ +...+....++.-..||+||+...-+|
T Consensus 538 lvSvLl~Gp~~sGKTaLAA~iA~~--S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~vp 615 (744)
T KOG0741|consen 538 LVSVLLEGPPGSGKTALAAKIALS--SDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYVP 615 (744)
T ss_pred ceEEEEecCCCCChHHHHHHHHhh--cCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhcccc
Confidence 678899999999999999888763 445554 222 233333444556689999999654332
Q ss_pred ----------HHHHhhccCCCC-CcE--EEEEeCChhHHHhcC----CCceEEcCCCCH-HHHHHHHhhh
Q 040354 113 ----------DCLIECLDWFAS-ASR--IIIISRDKQALISCG----VNKIYQMQELVH-ADALKLFSEC 164 (172)
Q Consensus 113 ----------~~l~~~~~~~~~-~s~--iiiTtr~~~~~~~~~----~~~~~~l~~l~~-~~~~~lf~~~ 164 (172)
..|.-.+....+ |-| |+-||....++..++ -...+.++.++. ++..+.+...
T Consensus 616 IGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~~ 685 (744)
T KOG0741|consen 616 IGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEEL 685 (744)
T ss_pred cCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHHc
Confidence 233333333333 444 445777777777765 234688888887 5666666544
No 138
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.23 E-value=6.1e-06 Score=55.51 Aligned_cols=27 Identities=26% Similarity=0.256 Sum_probs=23.7
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhcc
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKITRR 78 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~~~~ 78 (172)
..+.|+|++|+||||+++.++......
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 688999999999999999999985443
No 139
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.23 E-value=0.0001 Score=57.79 Aligned_cols=129 Identities=10% Similarity=0.105 Sum_probs=86.7
Q ss_pred chHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHH-hcc-c---cCc-------------C-----------c
Q 040354 34 SRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKI-TRR-F---EEF-------------P-----------N 84 (172)
Q Consensus 34 ~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~-~~~-f---~~~-------------~-----------~ 84 (172)
...+.+.+.+..+.- ...+.++|+.|+||+++|+.++..+ +.. . .+. . .
T Consensus 9 ~~~~~l~~~~~~~rl--~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~ 86 (325)
T PRK06871 9 PTYQQITQAFQQGLG--HHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKD 86 (325)
T ss_pred HHHHHHHHHHHcCCc--ceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCC
Confidence 345566666665543 3688899999999999999999883 321 1 111 1 1
Q ss_pred ccHHHHHHHh--------CCCeeEEEEecCC--CHHhHHHHHhhccCCCCCcEEEEEeCCh-hHHHhc-CCCceEEcCCC
Q 040354 85 IGLNFQSKRL--------TRKKLLIVFDDVH--HPRQIDCLIECLDWFASASRIIIISRDK-QALISC-GVNKIYQMQEL 152 (172)
Q Consensus 85 ~~~~~~~~~l--------~~~~~LlvlDdv~--~~~~~~~l~~~~~~~~~~s~iiiTtr~~-~~~~~~-~~~~~~~l~~l 152 (172)
+..+.+++.. .++.-++|+|+++ +....+.++..+..-.+.+.+|++|.+. .+...+ .....+.+.++
T Consensus 87 I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~ 166 (325)
T PRK06871 87 IGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPP 166 (325)
T ss_pred CCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCC
Confidence 2345555432 2345588899997 4566888888887766777777777654 444332 34568999999
Q ss_pred CHHHHHHHHhhh
Q 040354 153 VHADALKLFSEC 164 (172)
Q Consensus 153 ~~~~~~~lf~~~ 164 (172)
+.++..+.+...
T Consensus 167 ~~~~~~~~L~~~ 178 (325)
T PRK06871 167 EEQQALDWLQAQ 178 (325)
T ss_pred CHHHHHHHHHHH
Confidence 999998887764
No 140
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.23 E-value=1.4e-05 Score=70.09 Aligned_cols=108 Identities=15% Similarity=0.251 Sum_probs=66.0
Q ss_pred CCccccccchHHHHHHHhcC------CCCCCeeEEEEEcCCCchHHHHHHHHHHHHhcc---ccCc--------C-----
Q 040354 26 NNHLVGIESRTEEIESVLGV------GSTMNICKLGISGSGDIGKITIAGAIFNKITRR---FEEF--------P----- 83 (172)
Q Consensus 26 ~~~~~Gr~~~~~~l~~~l~~------~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~---f~~~--------~----- 83 (172)
...++|.+..++.+.+.+.. ....+..++.++|++|+|||.||+.+...+-.. |... .
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l 644 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRL 644 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccc
Confidence 35788999999998887642 122224678999999999999999988875221 1111 0
Q ss_pred ------ccc---HHHHHHHhCC-CeeEEEEecCCC--HHhHHHHHhhccCCC-----------CCcEEEEEeC
Q 040354 84 ------NIG---LNFQSKRLTR-KKLLIVFDDVHH--PRQIDCLIECLDWFA-----------SASRIIIISR 133 (172)
Q Consensus 84 ------~~~---~~~~~~~l~~-~~~LlvlDdv~~--~~~~~~l~~~~~~~~-----------~~s~iiiTtr 133 (172)
... ...+.+.++. ...+|+||+++. .+.++.|+..+.... ..+-||+||.
T Consensus 645 ~g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSN 717 (852)
T TIGR03345 645 KGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSN 717 (852)
T ss_pred cCCCCCcccccccchHHHHHHhCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCC
Confidence 000 0123333333 446999999973 444666665554332 3355677764
No 141
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.23 E-value=1.3e-05 Score=57.70 Aligned_cols=55 Identities=4% Similarity=0.041 Sum_probs=37.5
Q ss_pred HHHHHHhCCCeeEEEEecC----CCHHhHHHHHhhccCCCCCcEEEEEeCChhHHHhcC
Q 040354 88 NFQSKRLTRKKLLIVFDDV----HHPRQIDCLIECLDWFASASRIIIISRDKQALISCG 142 (172)
Q Consensus 88 ~~~~~~l~~~~~LlvlDdv----~~~~~~~~l~~~~~~~~~~s~iiiTtr~~~~~~~~~ 142 (172)
-.+.+.+-+++-+|+-|+- |...+|+-+.-.-.-+.-|+.|+++|++..+...+.
T Consensus 146 vaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 146 VAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhcc
Confidence 4455566678889999976 334455544322233447899999999999988864
No 142
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.22 E-value=1.8e-05 Score=61.65 Aligned_cols=130 Identities=15% Similarity=0.152 Sum_probs=82.7
Q ss_pred ccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhcc----------------------ccCc---
Q 040354 28 HLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITRR----------------------FEEF--- 82 (172)
Q Consensus 28 ~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~----------------------f~~~--- 82 (172)
.++|.+.....+..+....... ...+.++|++|+||||+|..+.+.+... .+..
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~-~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~ 80 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRL-PHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELN 80 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCC-CceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEec
Confidence 4567778888888888743322 3579999999999999999999985421 1111
Q ss_pred -Cc-----ccHHHHHHHhC--------CCeeEEEEecCCCH--HhHHHHHhhccCCCCCcEEEEEeCCh-hHHHhc-CCC
Q 040354 83 -PN-----IGLNFQSKRLT--------RKKLLIVFDDVHHP--RQIDCLIECLDWFASASRIIIISRDK-QALISC-GVN 144 (172)
Q Consensus 83 -~~-----~~~~~~~~~l~--------~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~s~iiiTtr~~-~~~~~~-~~~ 144 (172)
++ +..+.+++... ++.-++++|+++.. +..+.+...+......+++|++|... .+...+ ...
T Consensus 81 ~s~~~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~tI~SRc 160 (325)
T COG0470 81 PSDLRKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPTIRSRC 160 (325)
T ss_pred ccccCCCcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccchhhhcc
Confidence 11 12333443321 34578999999854 44677777777666788888887743 333322 234
Q ss_pred ceEEcCCCCHHHHH
Q 040354 145 KIYQMQELVHADAL 158 (172)
Q Consensus 145 ~~~~l~~l~~~~~~ 158 (172)
..+++.+.+..+..
T Consensus 161 ~~i~f~~~~~~~~i 174 (325)
T COG0470 161 QRIRFKPPSRLEAI 174 (325)
T ss_pred eeeecCCchHHHHH
Confidence 46677764444433
No 143
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.22 E-value=7.6e-05 Score=58.38 Aligned_cols=129 Identities=14% Similarity=0.125 Sum_probs=85.3
Q ss_pred chHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHH-hcc-ccC-----------c--Cc--------------
Q 040354 34 SRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKI-TRR-FEE-----------F--PN-------------- 84 (172)
Q Consensus 34 ~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~-~~~-f~~-----------~--~~-------------- 84 (172)
...+.+...+..+.- +..+.++|+.|+||+++|..++..+ +.. ... . .|
T Consensus 11 ~~~~~l~~~~~~~rl--~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k 88 (319)
T PRK08769 11 RAYDQTVAALDAGRL--GHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDK 88 (319)
T ss_pred HHHHHHHHHHHcCCc--ceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCccccc
Confidence 445566666655443 3689999999999999999998873 221 000 0 11
Q ss_pred ----ccHHHHHHHhC--------CCeeEEEEecCC--CHHhHHHHHhhccCCCCCcEEEEEeCCh-hHHHhc-CCCceEE
Q 040354 85 ----IGLNFQSKRLT--------RKKLLIVFDDVH--HPRQIDCLIECLDWFASASRIIIISRDK-QALISC-GVNKIYQ 148 (172)
Q Consensus 85 ----~~~~~~~~~l~--------~~~~LlvlDdv~--~~~~~~~l~~~~~~~~~~s~iiiTtr~~-~~~~~~-~~~~~~~ 148 (172)
+..+.+++... ++.-++|+|+++ +...-+.++..+..-.+++.+|++|.+. .+...+ .....+.
T Consensus 89 ~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~ 168 (319)
T PRK08769 89 LRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLE 168 (319)
T ss_pred ccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEee
Confidence 12445554432 345689999997 4556788888887666677777777653 344333 3456789
Q ss_pred cCCCCHHHHHHHHhhh
Q 040354 149 MQELVHADALKLFSEC 164 (172)
Q Consensus 149 l~~l~~~~~~~lf~~~ 164 (172)
+.+++.+++.+.+...
T Consensus 169 ~~~~~~~~~~~~L~~~ 184 (319)
T PRK08769 169 FKLPPAHEALAWLLAQ 184 (319)
T ss_pred CCCcCHHHHHHHHHHc
Confidence 9999999998888654
No 144
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=1.6e-05 Score=66.16 Aligned_cols=116 Identities=14% Similarity=0.192 Sum_probs=74.8
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhccccCcC--c-----c--cHHHHHHHh----CCCeeEEEEecCCCH--------
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKITRRFEEFP--N-----I--GLNFQSKRL----TRKKLLIVFDDVHHP-------- 109 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~--~-----~--~~~~~~~~l----~~~~~LlvlDdv~~~-------- 109 (172)
+.-+.+||++|.|||-||++++|+-.-+|-.+. . . ....++..+ ..-+++|+||+++..
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~ 624 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG 624 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC
Confidence 466899999999999999999999888887761 1 1 223333333 346899999999733
Q ss_pred -----HhHHHHHhhccCCC--CCcEEEEEeCChhHH-Hhc-C---CCceEEcCCCCHHHHHHHHhhhcC
Q 040354 110 -----RQIDCLIECLDWFA--SASRIIIISRDKQAL-ISC-G---VNKIYQMQELVHADALKLFSECAF 166 (172)
Q Consensus 110 -----~~~~~l~~~~~~~~--~~s~iiiTtr~~~~~-~~~-~---~~~~~~l~~l~~~~~~~lf~~~a~ 166 (172)
.-.++|+.-+.-.. .|-.||-.|.-.++. ..+ . -++..-+..-+.+|-.++++...-
T Consensus 625 s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tk 693 (802)
T KOG0733|consen 625 SSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITK 693 (802)
T ss_pred chhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhc
Confidence 12455655554332 455566555444333 221 1 345666777788888888876654
No 145
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=6.9e-06 Score=67.28 Aligned_cols=97 Identities=19% Similarity=0.219 Sum_probs=64.0
Q ss_pred cccccc---chHHHHHHHhcCCC------CCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc-----Ccc----cHHH
Q 040354 28 HLVGIE---SRTEEIESVLGVGS------TMNICKLGISGSGDIGKITIAGAIFNKITRRFEEF-----PNI----GLNF 89 (172)
Q Consensus 28 ~~~Gr~---~~~~~l~~~l~~~~------~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~-----~~~----~~~~ 89 (172)
++-|-+ .|+++|+++|.... +.-++-|.++|++|.|||-||++++.+-.-.|-.. +.+ ....
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VGvGArR 384 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVGVGARR 384 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhcccHHH
Confidence 344544 46777888887432 22257789999999999999999999854443332 233 5556
Q ss_pred HHHHhC----CCeeEEEEecCCCH-------------HhHHHHHhhccCCCC
Q 040354 90 QSKRLT----RKKLLIVFDDVHHP-------------RQIDCLIECLDWFAS 124 (172)
Q Consensus 90 ~~~~l~----~~~~LlvlDdv~~~-------------~~~~~l~~~~~~~~~ 124 (172)
++..+. .-+++|++|+++.. ..+++++..++-+..
T Consensus 385 VRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~q 436 (752)
T KOG0734|consen 385 VRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQ 436 (752)
T ss_pred HHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCc
Confidence 665554 35799999999732 225666656655543
No 146
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.20 E-value=2.2e-05 Score=63.34 Aligned_cols=153 Identities=18% Similarity=0.244 Sum_probs=92.3
Q ss_pred HHHHHHHhccccCCCCCCCccccccchHHHHHHHhcCC-CCCCeeEEEEEcCCCchHHHHHHHHHHHHhcc---ccCc--
Q 040354 9 IFKEVLDWLDDTFQTENNNHLVGIESRTEEIESVLGVG-STMNICKLGISGSGDIGKITIAGAIFNKITRR---FEEF-- 82 (172)
Q Consensus 9 i~~~v~~~~~~~~~~~~~~~~~Gr~~~~~~l~~~l~~~-~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~---f~~~-- 82 (172)
+.+.....+..+. .+..++||+.++..+.+|+... +....+.+.+.|.+|.|||.+...++.+.... |..+
T Consensus 135 ~~~~~~~~l~~t~---~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~i 211 (529)
T KOG2227|consen 135 ISEQRSESLLNTA---PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYI 211 (529)
T ss_pred HHHHHHHHHHhcC---CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEE
Confidence 3444444444443 3678999999999999998732 22236899999999999999999888873332 2212
Q ss_pred ----------------C----c-------c-cHHHHHHHhCC--CeeEEEEecCCCHHh--HHHHHhhccCCC-CCcEEE
Q 040354 83 ----------------P----N-------I-GLNFQSKRLTR--KKLLIVFDDVHHPRQ--IDCLIECLDWFA-SASRII 129 (172)
Q Consensus 83 ----------------~----~-------~-~~~~~~~~l~~--~~~LlvlDdv~~~~~--~~~l~~~~~~~~-~~s~ii 129 (172)
+ + + ....+...... ..+|+|+|++|.... -..+...|.|-. +++++|
T Consensus 212 nc~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~i 291 (529)
T KOG2227|consen 212 NCTSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRII 291 (529)
T ss_pred eeccccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceee
Confidence 0 0 0 12333334333 258999999985432 222333334333 566655
Q ss_pred EEeCC------hhHHHhcC-----CCceEEcCCCCHHHHHHHHhhh
Q 040354 130 IISRD------KQALISCG-----VNKIYQMQELVHADALKLFSEC 164 (172)
Q Consensus 130 iTtr~------~~~~~~~~-----~~~~~~l~~l~~~~~~~lf~~~ 164 (172)
+..-- ...+..+. ...++...|-+.++..++|..+
T Consensus 292 LiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~r 337 (529)
T KOG2227|consen 292 LIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQR 337 (529)
T ss_pred eeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHH
Confidence 44321 11111111 2356778899999999988765
No 147
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.20 E-value=1.3e-05 Score=60.39 Aligned_cols=41 Identities=22% Similarity=0.182 Sum_probs=28.8
Q ss_pred HHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhc
Q 040354 36 TEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITR 77 (172)
Q Consensus 36 ~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~ 77 (172)
+..+.++....... ...+.++|.+|+|||+||.++++.+..
T Consensus 85 l~~a~~~~~~~~~~-~~~~~l~G~~GtGKThLa~aia~~l~~ 125 (244)
T PRK07952 85 LSKARQYVEEFDGN-IASFIFSGKPGTGKNHLAAAICNELLL 125 (244)
T ss_pred HHHHHHHHHhhccC-CceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34444444432222 357899999999999999999998543
No 148
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.20 E-value=4.8e-05 Score=66.90 Aligned_cols=50 Identities=18% Similarity=0.302 Sum_probs=39.1
Q ss_pred CCccccccchHHHHHHHhcCC------CCCCeeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 26 NNHLVGIESRTEEIESVLGVG------STMNICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 26 ~~~~~Gr~~~~~~l~~~l~~~------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
...++|.+..++.+...+... .......+.++|++|+|||++|+.++...
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l 619 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFL 619 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 356899999999998877631 11214578899999999999999999874
No 149
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=3e-05 Score=60.09 Aligned_cols=114 Identities=11% Similarity=0.248 Sum_probs=65.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHh----ccccCc------------Cc------c---cHHHHHHHhCCCe--eEEEE
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKIT----RRFEEF------------PN------I---GLNFQSKRLTRKK--LLIVF 103 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~----~~f~~~------------~~------~---~~~~~~~~l~~~~--~Llvl 103 (172)
-+++.++||||+|||+|+++++.++. +++... .+ + ..+.+++.+.++. +.+.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLI 256 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLI 256 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 47899999999999999999999832 223322 11 1 4566677777655 34568
Q ss_pred ecCCCHH-----------------hHHHHHhhccCCCCCc-EEEEEeCC-hhHHHh--cC-CCceEEcCCCCHHHHHHHH
Q 040354 104 DDVHHPR-----------------QIDCLIECLDWFASAS-RIIIISRD-KQALIS--CG-VNKIYQMQELVHADALKLF 161 (172)
Q Consensus 104 Ddv~~~~-----------------~~~~l~~~~~~~~~~s-~iiiTtr~-~~~~~~--~~-~~~~~~l~~l~~~~~~~lf 161 (172)
|+|.+.. ..+.++..+++..... .+|++|.+ .+.... .. .+-..-+.+-+.+...+++
T Consensus 257 DEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai~~Il 336 (423)
T KOG0744|consen 257 DEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDVAFVDRADIVFYVGPPTAEAIYEIL 336 (423)
T ss_pred HHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHHHHhhhHhhheeecCCccHHHHHHHH
Confidence 9885431 1344444444333222 24455543 221111 11 2234557777777766666
Q ss_pred hhh
Q 040354 162 SEC 164 (172)
Q Consensus 162 ~~~ 164 (172)
+.+
T Consensus 337 ksc 339 (423)
T KOG0744|consen 337 KSC 339 (423)
T ss_pred HHH
Confidence 544
No 150
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.17 E-value=7.1e-06 Score=63.83 Aligned_cols=103 Identities=12% Similarity=0.147 Sum_probs=56.0
Q ss_pred cccchHHHHHHHhcCCC-CCCeeEEEEEcCCCchHHHHHHHHHHHHhcc-ccCc----CcccHHHHHH---------HhC
Q 040354 31 GIESRTEEIESVLGVGS-TMNICKLGISGSGDIGKITIAGAIFNKITRR-FEEF----PNIGLNFQSK---------RLT 95 (172)
Q Consensus 31 Gr~~~~~~l~~~l~~~~-~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~-f~~~----~~~~~~~~~~---------~l~ 95 (172)
+|........+++..-. .....-+.|+|+.|+|||+||.++++.+..+ +... .++ ...++. .+.
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l-~~~lk~~~~~~~~~~~l~ 213 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEF-IRELKNSISDGSVKEKID 213 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHH-HHHHHHHHhcCcHHHHHH
Confidence 34444444555655221 1114689999999999999999999995432 2221 111 111111 111
Q ss_pred --CCeeEEEEecCC--CHHhHHH--HHhhc-c-CCCCCcEEEEEeCC
Q 040354 96 --RKKLLIVFDDVH--HPRQIDC--LIECL-D-WFASASRIIIISRD 134 (172)
Q Consensus 96 --~~~~LlvlDdv~--~~~~~~~--l~~~~-~-~~~~~s~iiiTtr~ 134 (172)
.+--||||||+. ....|.. ++..+ . +...+..+|+||--
T Consensus 214 ~l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 214 AVKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred HhcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 133589999995 3444542 33332 2 22244457888763
No 151
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.16 E-value=0.00018 Score=56.34 Aligned_cols=129 Identities=10% Similarity=0.115 Sum_probs=86.4
Q ss_pred chHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHH-hccc---cCc---------------------C----c
Q 040354 34 SRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKI-TRRF---EEF---------------------P----N 84 (172)
Q Consensus 34 ~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~-~~~f---~~~---------------------~----~ 84 (172)
...+.+.+.+..+.- ...+.++|+.|+||+++|..++..+ +.+- .+. + .
T Consensus 10 ~~~~~l~~~~~~~rl--~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~ 87 (319)
T PRK06090 10 PVWQNWKAGLDAGRI--PGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKS 87 (319)
T ss_pred HHHHHHHHHHHcCCc--ceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCc
Confidence 345566666655443 4789999999999999999998873 2221 010 1 1
Q ss_pred ccHHHHHHH---h-----CCCeeEEEEecCC--CHHhHHHHHhhccCCCCCcEEEEEeCCh-hHHHhc-CCCceEEcCCC
Q 040354 85 IGLNFQSKR---L-----TRKKLLIVFDDVH--HPRQIDCLIECLDWFASASRIIIISRDK-QALISC-GVNKIYQMQEL 152 (172)
Q Consensus 85 ~~~~~~~~~---l-----~~~~~LlvlDdv~--~~~~~~~l~~~~~~~~~~s~iiiTtr~~-~~~~~~-~~~~~~~l~~l 152 (172)
+..+.++.. + .++.-++|+|+++ +....+.++..+..-.+++.+|++|.+. .+...+ .....+.+.++
T Consensus 88 I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~ 167 (319)
T PRK06090 88 ITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPP 167 (319)
T ss_pred CCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCC
Confidence 234444442 2 1334588999997 4567888998887766777777666654 444443 45568999999
Q ss_pred CHHHHHHHHhhh
Q 040354 153 VHADALKLFSEC 164 (172)
Q Consensus 153 ~~~~~~~lf~~~ 164 (172)
+.++..+.+...
T Consensus 168 ~~~~~~~~L~~~ 179 (319)
T PRK06090 168 STAQAMQWLKGQ 179 (319)
T ss_pred CHHHHHHHHHHc
Confidence 999998888654
No 152
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=98.15 E-value=4.1e-06 Score=66.16 Aligned_cols=57 Identities=21% Similarity=0.189 Sum_probs=41.7
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhccccCc-------Ccc--cHHHHHHHh---------CCCeeEEEEecCC
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKITRRFEEF-------PNI--GLNFQSKRL---------TRKKLLIVFDDVH 107 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~-------~~~--~~~~~~~~l---------~~~~~LlvlDdv~ 107 (172)
+..++|||++|.|||.+|++++++..-.|-.. ... ....+++.+ ++++++|+||+++
T Consensus 148 PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEID 222 (413)
T PLN00020 148 PLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLD 222 (413)
T ss_pred CeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhh
Confidence 68999999999999999999999976665443 111 223333332 3468999999996
No 153
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.14 E-value=7e-05 Score=63.49 Aligned_cols=51 Identities=24% Similarity=0.221 Sum_probs=40.5
Q ss_pred CCCCccccccchHHHHHHHhcCCCC--CCeeEEEEEcCCCchHHHHHHHHHHH
Q 040354 24 ENNNHLVGIESRTEEIESVLGVGST--MNICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 24 ~~~~~~~Gr~~~~~~l~~~l~~~~~--~~~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
..-+.++|.+..++.+..|+..... ...+++.|+|++|+||||+++.++..
T Consensus 81 ~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 81 ETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3346789999999999999874321 11367999999999999999999877
No 154
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=1.5e-05 Score=66.57 Aligned_cols=116 Identities=15% Similarity=0.186 Sum_probs=73.1
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhccccCc-------Ccc--cHHHHHHHh----CCCeeEEEEecCCCHH-------
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKITRRFEEF-------PNI--GLNFQSKRL----TRKKLLIVFDDVHHPR------- 110 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~-------~~~--~~~~~~~~l----~~~~~LlvlDdv~~~~------- 110 (172)
++-|.+||+||.|||++|+++++.-.-+|-.+ ... ....++..+ .--++++.||+++...
T Consensus 468 pkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~ 547 (693)
T KOG0730|consen 468 PKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSS 547 (693)
T ss_pred CceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCc
Confidence 68899999999999999999999977776655 111 223333333 3357999999997431
Q ss_pred ------hHHHHHhhccCCCCCcEEEE---EeCChhHHHhc-C---CCceEEcCCCCHHHHHHHHhhhcC
Q 040354 111 ------QIDCLIECLDWFASASRIII---ISRDKQALISC-G---VNKIYQMQELVHADALKLFSECAF 166 (172)
Q Consensus 111 ------~~~~l~~~~~~~~~~s~iii---Ttr~~~~~~~~-~---~~~~~~l~~l~~~~~~~lf~~~a~ 166 (172)
-+..++.-++-......|+| |.|...+-..+ . .++.+-++.-+.+.-.++|+.++-
T Consensus 548 ~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~k 616 (693)
T KOG0730|consen 548 SGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAK 616 (693)
T ss_pred cchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHh
Confidence 14455555543333333443 44443333322 2 345677877778888888887653
No 155
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.13 E-value=1.6e-05 Score=66.79 Aligned_cols=107 Identities=21% Similarity=0.308 Sum_probs=74.4
Q ss_pred CCCccccccchHHHHHHHhc---CCCCCCeeEEEEEcCCCchHHHHHHHHHHHHh--------ccccCc-----------
Q 040354 25 NNNHLVGIESRTEEIESVLG---VGSTMNICKLGISGSGDIGKITIAGAIFNKIT--------RRFEEF----------- 82 (172)
Q Consensus 25 ~~~~~~Gr~~~~~~l~~~l~---~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~--------~~f~~~----------- 82 (172)
.+..+-+|+.+..+|..++. .. +.....+.|.|.+|+|||..+..+.+.++ ..|+..
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~~-~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~ 472 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFISD-QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPR 472 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcCC-CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHH
Confidence 45667899999999998886 22 12246999999999999999999999743 235555
Q ss_pred ------------Ccc----cHHHHHHHhC-----CCeeEEEEecCCCHHh--HHHHHhhccCCC-CCcEEEEEe
Q 040354 83 ------------PNI----GLNFQSKRLT-----RKKLLIVFDDVHHPRQ--IDCLIECLDWFA-SASRIIIIS 132 (172)
Q Consensus 83 ------------~~~----~~~~~~~~l~-----~~~~LlvlDdv~~~~~--~~~l~~~~~~~~-~~s~iiiTt 132 (172)
+.. ....+..++. ....++++|+++..-. .+-+...+.|-. ++|+++|.+
T Consensus 473 ~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~ 546 (767)
T KOG1514|consen 473 EIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIA 546 (767)
T ss_pred HHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEE
Confidence 111 3445555544 2458999999976543 455666777766 688866554
No 156
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.13 E-value=7.3e-05 Score=65.73 Aligned_cols=50 Identities=16% Similarity=0.298 Sum_probs=38.5
Q ss_pred CCccccccchHHHHHHHhcCC------CCCCeeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 26 NNHLVGIESRTEEIESVLGVG------STMNICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 26 ~~~~~Gr~~~~~~l~~~l~~~------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
...++|.+..++.+...+... .+.+...+.++|++|+|||++|+.+++..
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 456889999988888876521 12213578999999999999999999874
No 157
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.12 E-value=0.00016 Score=57.06 Aligned_cols=130 Identities=12% Similarity=0.093 Sum_probs=86.8
Q ss_pred cchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHH-hcc-c---cCc---------------------C---
Q 040354 33 ESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKI-TRR-F---EEF---------------------P--- 83 (172)
Q Consensus 33 ~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~-~~~-f---~~~---------------------~--- 83 (172)
+...+.+.+.+..+.- ...+.++|+.|+||+++|..++..+ +.+ - .+. +
T Consensus 8 ~~~~~~l~~~~~~~rl--~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~ 85 (334)
T PRK07993 8 RPDYEQLVGSYQAGRG--HHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGK 85 (334)
T ss_pred hHHHHHHHHHHHcCCc--ceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccccc
Confidence 3456677777765543 3789999999999999999998883 321 1 111 1
Q ss_pred c-ccHHHHHHHhC--------CCeeEEEEecCC--CHHhHHHHHhhccCCCCCcEEEEEeCCh-hHHHh-cCCCceEEcC
Q 040354 84 N-IGLNFQSKRLT--------RKKLLIVFDDVH--HPRQIDCLIECLDWFASASRIIIISRDK-QALIS-CGVNKIYQMQ 150 (172)
Q Consensus 84 ~-~~~~~~~~~l~--------~~~~LlvlDdv~--~~~~~~~l~~~~~~~~~~s~iiiTtr~~-~~~~~-~~~~~~~~l~ 150 (172)
. +..+.+++... ++.-++|+|+++ +....+.++..+..-.+++.+|++|.+. .+... ......+.+.
T Consensus 86 ~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~ 165 (334)
T PRK07993 86 SSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLA 165 (334)
T ss_pred ccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCC
Confidence 1 23344443322 345688999997 4566888888887666677777666653 44434 2344578999
Q ss_pred CCCHHHHHHHHhhh
Q 040354 151 ELVHADALKLFSEC 164 (172)
Q Consensus 151 ~l~~~~~~~lf~~~ 164 (172)
+++.++..+.+...
T Consensus 166 ~~~~~~~~~~L~~~ 179 (334)
T PRK07993 166 PPPEQYALTWLSRE 179 (334)
T ss_pred CCCHHHHHHHHHHc
Confidence 99999988877553
No 158
>PRK06696 uridine kinase; Validated
Probab=98.12 E-value=4.3e-06 Score=62.13 Aligned_cols=46 Identities=17% Similarity=0.180 Sum_probs=35.9
Q ss_pred cccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 31 GIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 31 Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
.|.+.+++|.+.+.......+.+|+|.|.+|+||||||+.+...+.
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~ 47 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIK 47 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3566777887777643333378999999999999999999998763
No 159
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.12 E-value=2.9e-05 Score=57.76 Aligned_cols=106 Identities=17% Similarity=0.231 Sum_probs=68.6
Q ss_pred CccccccchHHHHHHHh---cCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc-----Ccc-cHHHHHHHhCC-
Q 040354 27 NHLVGIESRTEEIESVL---GVGSTMNICKLGISGSGDIGKITIAGAIFNKITRRFEEF-----PNI-GLNFQSKRLTR- 96 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l---~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~-----~~~-~~~~~~~~l~~- 96 (172)
..++|.+...+.+.+-. ..+. ...-+.+||..|+|||+|++++.+.+....-.. +++ ....+.+.++.
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~--pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~~Lp~l~~~Lr~~ 137 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGL--PANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLATLPDLVELLRAR 137 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCC--cccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHhhHHHHHHHHhcC
Confidence 46788877777665422 1222 257899999999999999999999976653332 444 44455555554
Q ss_pred -CeeEEEEecCC---CHHhHHHHHhhccCCC---CCcEEEEEeCC
Q 040354 97 -KKLLIVFDDVH---HPRQIDCLIECLDWFA---SASRIIIISRD 134 (172)
Q Consensus 97 -~~~LlvlDdv~---~~~~~~~l~~~~~~~~---~~s~iiiTtr~ 134 (172)
.+++|..||+. +.+.+..+...+.-.- +.-.++..|.+
T Consensus 138 ~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSN 182 (287)
T COG2607 138 PEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSN 182 (287)
T ss_pred CceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecC
Confidence 68999999993 4556777776664221 23335555544
No 160
>PRK06921 hypothetical protein; Provisional
Probab=98.11 E-value=6.7e-06 Score=62.78 Aligned_cols=27 Identities=22% Similarity=0.302 Sum_probs=23.8
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhc
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKITR 77 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~~ 77 (172)
...+.++|++|+|||+||.++++.+..
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~ 143 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMR 143 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhh
Confidence 468999999999999999999998543
No 161
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.11 E-value=1.8e-05 Score=68.42 Aligned_cols=95 Identities=9% Similarity=0.267 Sum_probs=60.5
Q ss_pred CCccccccchHHHHHHHhcC------CCCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc------C--cc------
Q 040354 26 NNHLVGIESRTEEIESVLGV------GSTMNICKLGISGSGDIGKITIAGAIFNKITRRFEEF------P--NI------ 85 (172)
Q Consensus 26 ~~~~~Gr~~~~~~l~~~l~~------~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~------~--~~------ 85 (172)
...++|.+..++.|.+.+.. ....+...+.++|++|+|||++|+.++..+...|-.. + ..
T Consensus 457 ~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~ 536 (758)
T PRK11034 457 KMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGA 536 (758)
T ss_pred cceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCC
Confidence 35689999999988887762 1122246789999999999999999988764443211 0 00
Q ss_pred --------cHHHHHHHhCC-CeeEEEEecCCCH--HhHHHHHhhcc
Q 040354 86 --------GLNFQSKRLTR-KKLLIVFDDVHHP--RQIDCLIECLD 120 (172)
Q Consensus 86 --------~~~~~~~~l~~-~~~LlvlDdv~~~--~~~~~l~~~~~ 120 (172)
....+.+.+.. ...+|+||+++.. +.++.++..+.
T Consensus 537 ~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld 582 (758)
T PRK11034 537 PPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMD 582 (758)
T ss_pred CCCcccccccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHh
Confidence 01123333333 3469999999843 44666665554
No 162
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=5.6e-06 Score=68.68 Aligned_cols=81 Identities=12% Similarity=0.191 Sum_probs=56.4
Q ss_pred CccccccchHHHHHHHhcCCC---------CCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc------Ccc---cHH
Q 040354 27 NHLVGIESRTEEIESVLGVGS---------TMNICKLGISGSGDIGKITIAGAIFNKITRRFEEF------PNI---GLN 88 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~---------~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~------~~~---~~~ 88 (172)
.++=|.+..+.++..++..-. -..++-+.++|++|.|||.||++++++..-.|-.. +.+ ...
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESEk 269 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEK 269 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccHH
Confidence 345577777777766554211 11267899999999999999999999977766554 111 334
Q ss_pred HHHHHh----CCCeeEEEEecCC
Q 040354 89 FQSKRL----TRKKLLIVFDDVH 107 (172)
Q Consensus 89 ~~~~~l----~~~~~LlvlDdv~ 107 (172)
.+++.+ ..-++++++|+++
T Consensus 270 kiRelF~~A~~~aPcivFiDeID 292 (802)
T KOG0733|consen 270 KIRELFDQAKSNAPCIVFIDEID 292 (802)
T ss_pred HHHHHHHHHhccCCeEEEeeccc
Confidence 444444 4578999999997
No 163
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.11 E-value=4e-06 Score=60.24 Aligned_cols=25 Identities=32% Similarity=0.238 Sum_probs=21.6
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
...+.|+|++|+|||+||..+.+..
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~ 71 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEA 71 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHh
Confidence 4679999999999999999999883
No 164
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.11 E-value=2.6e-05 Score=66.85 Aligned_cols=130 Identities=16% Similarity=0.165 Sum_probs=72.0
Q ss_pred CCccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhcc-----------------ccCc------
Q 040354 26 NNHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITRR-----------------FEEF------ 82 (172)
Q Consensus 26 ~~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~-----------------f~~~------ 82 (172)
+...+-|..- .+.|.... + .+.+.|..|+|.|||||+-+.+...... |-.+
T Consensus 18 ~~~~v~R~rL----~~~L~~~~-~-~RL~li~APAGfGKttl~aq~~~~~~~~~~v~Wlslde~dndp~rF~~yLi~al~ 91 (894)
T COG2909 18 PDNYVVRPRL----LDRLRRAN-D-YRLILISAPAGFGKTTLLAQWRELAADGAAVAWLSLDESDNDPARFLSYLIAALQ 91 (894)
T ss_pred cccccccHHH----HHHHhcCC-C-ceEEEEeCCCCCcHHHHHHHHHHhcCcccceeEeecCCccCCHHHHHHHHHHHHH
Confidence 4445555544 44444332 2 6999999999999999999886531111 1000
Q ss_pred ---Ccc---------------cHHHHHHHh---C--CCeeEEEEecCCCH--H----hHHHHHhhccCCCCCcEEEEEeC
Q 040354 83 ---PNI---------------GLNFQSKRL---T--RKKLLIVFDDVHHP--R----QIDCLIECLDWFASASRIIIISR 133 (172)
Q Consensus 83 ---~~~---------------~~~~~~~~l---~--~~~~LlvlDdv~~~--~----~~~~l~~~~~~~~~~s~iiiTtr 133 (172)
++. +...+...+ . .++..+||||..-. . .+..+.... .++-.+++|||
T Consensus 92 ~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~---P~~l~lvv~SR 168 (894)
T COG2909 92 QATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHA---PENLTLVVTSR 168 (894)
T ss_pred HhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhC---CCCeEEEEEec
Confidence 000 111222222 1 35789999999622 1 233333333 36778999999
Q ss_pred ChhHHHh---cCCCceE----EcCCCCHHHHHHHHhhh
Q 040354 134 DKQALIS---CGVNKIY----QMQELVHADALKLFSEC 164 (172)
Q Consensus 134 ~~~~~~~---~~~~~~~----~l~~l~~~~~~~lf~~~ 164 (172)
...-... --.+... +.-.|+.+|+.++|...
T Consensus 169 ~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~ 206 (894)
T COG2909 169 SRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDR 206 (894)
T ss_pred cCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHc
Confidence 7632211 1111222 23467889999987655
No 165
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.10 E-value=3.1e-06 Score=56.52 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=21.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 040354 53 KLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 53 ~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
+|+|.|++|+||||+|+.+....
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999874
No 166
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.09 E-value=1.3e-05 Score=64.95 Aligned_cols=45 Identities=24% Similarity=0.256 Sum_probs=37.0
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
+++++.+..++.+...|... +.+.++|++|+|||++|+.+++.+.
T Consensus 175 ~d~~i~e~~le~l~~~L~~~-----~~iil~GppGtGKT~lA~~la~~l~ 219 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK-----KNIILQGPPGVGKTFVARRLAYLLT 219 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC-----CCEEEECCCCCCHHHHHHHHHHHhc
Confidence 45777888888888877742 5788899999999999999988753
No 167
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.09 E-value=0.00025 Score=56.01 Aligned_cols=114 Identities=15% Similarity=0.163 Sum_probs=77.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH-hcc----cc-Cc-------------Cc---------------------------
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI-TRR----FE-EF-------------PN--------------------------- 84 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~-~~~----f~-~~-------------~~--------------------------- 84 (172)
...+.++|+.|+||+++|+.++..+ +.. .. +. .|
T Consensus 21 ~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~~~ 100 (342)
T PRK06964 21 PHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADADE 100 (342)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchhhc
Confidence 5788999999999999999999873 221 10 01 11
Q ss_pred -----------ccHHHHHHHh--------CCCeeEEEEecCC--CHHhHHHHHhhccCCCCCcEEEEEeCC-hhHHHhc-
Q 040354 85 -----------IGLNFQSKRL--------TRKKLLIVFDDVH--HPRQIDCLIECLDWFASASRIIIISRD-KQALISC- 141 (172)
Q Consensus 85 -----------~~~~~~~~~l--------~~~~~LlvlDdv~--~~~~~~~l~~~~~~~~~~s~iiiTtr~-~~~~~~~- 141 (172)
+..+.++... .++.-++|+|+++ +....+.|+..+..-.+++.+|++|.+ ..+...+
T Consensus 101 ~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~ 180 (342)
T PRK06964 101 GGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTIL 180 (342)
T ss_pred ccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHH
Confidence 1223443322 1234588899997 556789999888766677766666555 4444343
Q ss_pred CCCceEEcCCCCHHHHHHHHhhh
Q 040354 142 GVNKIYQMQELVHADALKLFSEC 164 (172)
Q Consensus 142 ~~~~~~~l~~l~~~~~~~lf~~~ 164 (172)
.....+.+.+++.++..+.+...
T Consensus 181 SRcq~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 181 SRCRQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred hcCEEEEecCCCHHHHHHHHHHc
Confidence 34568999999999999888764
No 168
>PHA00729 NTP-binding motif containing protein
Probab=98.09 E-value=1.6e-05 Score=58.96 Aligned_cols=26 Identities=23% Similarity=0.167 Sum_probs=23.1
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
...+.|+|.+|+||||||..+.+.+.
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999999998753
No 169
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.09 E-value=2.4e-05 Score=66.77 Aligned_cols=114 Identities=11% Similarity=0.104 Sum_probs=67.5
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhccccCc--Ccc-----------cHHHHHHHhCCCeeEEEEecCCCHH--------
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKITRRFEEF--PNI-----------GLNFQSKRLTRKKLLIVFDDVHHPR-------- 110 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~--~~~-----------~~~~~~~~l~~~~~LlvlDdv~~~~-------- 110 (172)
+-+.|+|++|+|||++|+.++++....|-.. .++ ....+.......+++|++|+++...
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~ 265 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLG 265 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCC
Confidence 4599999999999999999999865554332 110 1222333333467899999997431
Q ss_pred --------hHHHHHhhccCCC--CCcEEEEEeCChhHHH-hc----CCCceEEcCCCCHHHHHHHHhhhc
Q 040354 111 --------QIDCLIECLDWFA--SASRIIIISRDKQALI-SC----GVNKIYQMQELVHADALKLFSECA 165 (172)
Q Consensus 111 --------~~~~l~~~~~~~~--~~s~iiiTtr~~~~~~-~~----~~~~~~~l~~l~~~~~~~lf~~~a 165 (172)
.+..++..+.... .+.-+|.||...+... .+ .....+.+...+.++..+++..+.
T Consensus 266 g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~ 335 (644)
T PRK10733 266 GGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHM 335 (644)
T ss_pred CCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHh
Confidence 1233333333222 2333444665544322 11 124567888888888888777653
No 170
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.08 E-value=2.9e-05 Score=58.61 Aligned_cols=139 Identities=14% Similarity=0.138 Sum_probs=85.6
Q ss_pred CccccccchHH---HHHHHhcCCCC---CCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc-------Ccc--cHHHHH
Q 040354 27 NHLVGIESRTE---EIESVLGVGST---MNICKLGISGSGDIGKITIAGAIFNKITRRFEEF-------PNI--GLNFQS 91 (172)
Q Consensus 27 ~~~~Gr~~~~~---~l~~~l~~~~~---~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~-------~~~--~~~~~~ 91 (172)
++++|.++... -|+++|..... =-++.+..+|++|+|||.+|++++++....|-.. +.. ....++
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~Ih 200 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIH 200 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHHH
Confidence 56888776543 45566653321 0168999999999999999999999866665544 111 333333
Q ss_pred HHh----CCCeeEEEEecCCCH--------------HhHHHHHhhccCCC--CCcEEEEEeCChhHHHh-c--CCCceEE
Q 040354 92 KRL----TRKKLLIVFDDVHHP--------------RQIDCLIECLDWFA--SASRIIIISRDKQALIS-C--GVNKIYQ 148 (172)
Q Consensus 92 ~~l----~~~~~LlvlDdv~~~--------------~~~~~l~~~~~~~~--~~s~iiiTtr~~~~~~~-~--~~~~~~~ 148 (172)
+.. +.-+|++.+|+++-. +..+.|+..+.... .|..-|..|.+.+++.. + .-..-++
T Consensus 201 ely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRsRFEeEIE 280 (368)
T COG1223 201 ELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRSRFEEEIE 280 (368)
T ss_pred HHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHhhhhheee
Confidence 333 236899999999632 12445554444322 45555555555444422 1 1234577
Q ss_pred cCCCCHHHHHHHHhhhc
Q 040354 149 MQELVHADALKLFSECA 165 (172)
Q Consensus 149 l~~l~~~~~~~lf~~~a 165 (172)
..--+++|-.+++..++
T Consensus 281 F~LP~~eEr~~ile~y~ 297 (368)
T COG1223 281 FKLPNDEERLEILEYYA 297 (368)
T ss_pred eeCCChHHHHHHHHHHH
Confidence 77778888888877654
No 171
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.06 E-value=1.5e-05 Score=60.39 Aligned_cols=27 Identities=30% Similarity=0.289 Sum_probs=24.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhc
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKITR 77 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~~ 77 (172)
...+.++|++|+|||.||.++.+++..
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~ 131 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLK 131 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHH
Confidence 578999999999999999999999553
No 172
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.06 E-value=1.1e-05 Score=57.48 Aligned_cols=24 Identities=21% Similarity=0.491 Sum_probs=20.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhc
Q 040354 54 LGISGSGDIGKITIAGAIFNKITR 77 (172)
Q Consensus 54 i~I~G~~GiGKTtLa~~~~~~~~~ 77 (172)
+.|+|++|+|||||++.++..++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 689999999999999999998643
No 173
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.05 E-value=4.4e-05 Score=66.89 Aligned_cols=96 Identities=16% Similarity=0.316 Sum_probs=60.6
Q ss_pred CCccccccchHHHHHHHhcC------CCCCCeeEEEEEcCCCchHHHHHHHHHHHHhc---c---ccCcC-----cc---
Q 040354 26 NNHLVGIESRTEEIESVLGV------GSTMNICKLGISGSGDIGKITIAGAIFNKITR---R---FEEFP-----NI--- 85 (172)
Q Consensus 26 ~~~~~Gr~~~~~~l~~~l~~------~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~---~---f~~~~-----~~--- 85 (172)
...++|.+..++.+.+.+.. ....+...+.++|++|+|||+||+.++..+-. . ++..+ ..
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l 587 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKL 587 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHh
Confidence 46788999999998876651 12221356789999999999999999987421 1 11110 00
Q ss_pred -----------cHHHHHHHhCCCe-eEEEEecCC--CHHhHHHHHhhccC
Q 040354 86 -----------GLNFQSKRLTRKK-LLIVFDDVH--HPRQIDCLIECLDW 121 (172)
Q Consensus 86 -----------~~~~~~~~l~~~~-~LlvlDdv~--~~~~~~~l~~~~~~ 121 (172)
-...+.+.+..++ .+++||+++ +.+.++.|+..+..
T Consensus 588 ~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~ 637 (821)
T CHL00095 588 IGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDD 637 (821)
T ss_pred cCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhcc
Confidence 0123444444444 589999997 44556666665543
No 174
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.04 E-value=5.8e-05 Score=53.70 Aligned_cols=96 Identities=18% Similarity=0.318 Sum_probs=57.8
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhc---c--ccCc-----------------------------Cc-c-----cHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKITR---R--FEEF-----------------------------PN-I-----GLNFQS 91 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~~~---~--f~~~-----------------------------~~-~-----~~~~~~ 91 (172)
.+++|.|+.|+|||||++.++..... . |... ++ + ..-.+.
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~~~rl~la 108 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQRQRIAIA 108 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHHHHHHHHH
Confidence 58999999999999999999876221 1 1100 00 1 011233
Q ss_pred HHhCCCeeEEEEecCC---CHHhHHHHHhhccCCCCCcEEEEEeCChhHHHhcCCCceEEc
Q 040354 92 KRLTRKKLLIVFDDVH---HPRQIDCLIECLDWFASASRIIIISRDKQALISCGVNKIYQM 149 (172)
Q Consensus 92 ~~l~~~~~LlvlDdv~---~~~~~~~l~~~~~~~~~~s~iiiTtr~~~~~~~~~~~~~~~l 149 (172)
..+..++-++++|+.. |......+...+.....+..||++|++...... +++++.+
T Consensus 109 ~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l 167 (171)
T cd03228 109 RALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD--ADRIIVL 167 (171)
T ss_pred HHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 4445677899999985 333333333333322235679999998877654 4555544
No 175
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.04 E-value=0.00017 Score=60.40 Aligned_cols=50 Identities=18% Similarity=0.197 Sum_probs=40.3
Q ss_pred CCCCccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHH
Q 040354 24 ENNNHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 24 ~~~~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.....++|....+..+.+.+..-... ...|.|+|++|+|||++|+.++..
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a~~-~~pvli~Ge~GtGK~~lA~~ih~~ 242 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVARS-NSTVLLRGESGTGKELIAKAIHYL 242 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHhCc-CCCEEEECCCCccHHHHHHHHHHh
Confidence 34567899999999988877633322 467889999999999999999987
No 176
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.03 E-value=6.1e-06 Score=56.60 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=22.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhccc
Q 040354 54 LGISGSGDIGKITIAGAIFNKITRRF 79 (172)
Q Consensus 54 i~I~G~~GiGKTtLa~~~~~~~~~~f 79 (172)
|.|+|++|+|||+||+.++..+...+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~~~ 27 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGRPV 27 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcce
Confidence 68999999999999999999865443
No 177
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=6.3e-05 Score=62.31 Aligned_cols=116 Identities=16% Similarity=0.137 Sum_probs=73.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhccccCc-------Ccc------cHHHHHHHhCCCeeEEEEecCCCH--------
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKITRRFEEF-------PNI------GLNFQSKRLTRKKLLIVFDDVHHP-------- 109 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~-------~~~------~~~~~~~~l~~~~~LlvlDdv~~~-------- 109 (172)
...+.++|++|+|||.||+++++....+|... ..+ ....+....+..+++|++|+++..
T Consensus 276 ~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~ 355 (494)
T COG0464 276 PKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSE 355 (494)
T ss_pred CCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCC
Confidence 56899999999999999999999866666554 111 233333334467899999999632
Q ss_pred -----HhHHHHHhhccCCCCCc--EEEEEeCChhHHH-hc----CCCceEEcCCCCHHHHHHHHhhhcC
Q 040354 110 -----RQIDCLIECLDWFASAS--RIIIISRDKQALI-SC----GVNKIYQMQELVHADALKLFSECAF 166 (172)
Q Consensus 110 -----~~~~~l~~~~~~~~~~s--~iiiTtr~~~~~~-~~----~~~~~~~l~~l~~~~~~~lf~~~a~ 166 (172)
.-..+++..+......+ .||-+|-...... .+ .-...+.+.+-+.++..+.|+.+.-
T Consensus 356 ~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~ 424 (494)
T COG0464 356 DGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLR 424 (494)
T ss_pred chHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhc
Confidence 12334443443233333 3444443333222 11 2245788999999999999987754
No 178
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.03 E-value=2.7e-05 Score=61.13 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=22.9
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
..+.++|++|+|||+||.++++.+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~ 208 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELL 208 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHH
Confidence 6799999999999999999999843
No 179
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.01 E-value=5.9e-05 Score=52.23 Aligned_cols=95 Identities=21% Similarity=0.307 Sum_probs=57.9
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhc---c--ccCc------Ccc-----cHHHHHHHhCCCeeEEEEecCC---CHHhH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKITR---R--FEEF------PNI-----GLNFQSKRLTRKKLLIVFDDVH---HPRQI 112 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~~~---~--f~~~------~~~-----~~~~~~~~l~~~~~LlvlDdv~---~~~~~ 112 (172)
.+++|.|+.|+|||||++.+...... . ++.. ..+ ..-.+...+..++-++++|+.. |....
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~ 106 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESI 106 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHH
Confidence 68999999999999999999876321 1 1110 112 2233445556677899999984 44444
Q ss_pred HHHHhhccCCCCCcEEEEEeCChhHHHhcCCCceEEc
Q 040354 113 DCLIECLDWFASASRIIIISRDKQALISCGVNKIYQM 149 (172)
Q Consensus 113 ~~l~~~~~~~~~~s~iiiTtr~~~~~~~~~~~~~~~l 149 (172)
..+...+... +..||++|++....... +++++.+
T Consensus 107 ~~l~~~l~~~--~~til~~th~~~~~~~~-~d~v~~l 140 (144)
T cd03221 107 EALEEALKEY--PGTVILVSHDRYFLDQV-ATKIIEL 140 (144)
T ss_pred HHHHHHHHHc--CCEEEEEECCHHHHHHh-CCEEEEE
Confidence 4444333322 24588999887766443 2344443
No 180
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=4.7e-05 Score=65.38 Aligned_cols=97 Identities=19% Similarity=0.311 Sum_probs=64.8
Q ss_pred CCccccccchHHHHHHHhc------CCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhc------cccCcC----------
Q 040354 26 NNHLVGIESRTEEIESVLG------VGSTMNICKLGISGSGDIGKITIAGAIFNKITR------RFEEFP---------- 83 (172)
Q Consensus 26 ~~~~~Gr~~~~~~l~~~l~------~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~------~f~~~~---------- 83 (172)
...++|.+..++.+.+.+. .+.+.+..+..+.||.|+|||.||+.++..+-. +|+..+
T Consensus 490 ~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrL 569 (786)
T COG0542 490 KKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRL 569 (786)
T ss_pred hcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHH
Confidence 3578999999998888775 222233678888999999999999999887432 233330
Q ss_pred ------cc---cHHHHHHHhCCCee-EEEEecCC--CHHhHHHHHhhccCC
Q 040354 84 ------NI---GLNFQSKRLTRKKL-LIVFDDVH--HPRQIDCLIECLDWF 122 (172)
Q Consensus 84 ------~~---~~~~~~~~l~~~~~-LlvlDdv~--~~~~~~~l~~~~~~~ 122 (172)
.+ --..+-+..+.++| ++.||+|. +.+-++.|+..+...
T Consensus 570 IGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 570 IGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred hCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 00 11233334445555 88999997 456677777776644
No 181
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.00 E-value=6e-05 Score=54.09 Aligned_cols=89 Identities=15% Similarity=0.196 Sum_probs=54.2
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhc---c--ccCc------Cc--c-----cHHHHHHHhCCCeeEEEEecCC---CHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKITR---R--FEEF------PN--I-----GLNFQSKRLTRKKLLIVFDDVH---HPR 110 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~~~---~--f~~~------~~--~-----~~~~~~~~l~~~~~LlvlDdv~---~~~ 110 (172)
.+++|.|+.|+|||||++.+...... . +... .+ + ..-.+...+..++-++++|+.. |..
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts~LD~~ 105 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIE 105 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHH
Confidence 59999999999999999999875321 1 1110 11 2 2233344555677899999984 333
Q ss_pred hHHHHHhhccCC-CC-CcEEEEEeCChhHHHh
Q 040354 111 QIDCLIECLDWF-AS-ASRIIIISRDKQALIS 140 (172)
Q Consensus 111 ~~~~l~~~~~~~-~~-~s~iiiTtr~~~~~~~ 140 (172)
....+...+... .. +..||++|++......
T Consensus 106 ~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~ 137 (177)
T cd03222 106 QRLNAARAIRRLSEEGKKTALVVEHDLAVLDY 137 (177)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEECCHHHHHH
Confidence 333333332211 12 3568999998876654
No 182
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.99 E-value=4.7e-05 Score=57.06 Aligned_cols=31 Identities=19% Similarity=0.442 Sum_probs=26.4
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhccccCc
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKITRRFEEF 82 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~ 82 (172)
-.++|.|++|+|||||+..+.......|...
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~~f~~I 44 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRHKFDHI 44 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcccCCEE
Confidence 4788999999999999999998877776554
No 183
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.98 E-value=0.00019 Score=56.44 Aligned_cols=114 Identities=14% Similarity=0.142 Sum_probs=72.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH-hccc-----cCc-------------Cc-------------------ccHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI-TRRF-----EEF-------------PN-------------------IGLNFQSK 92 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~-~~~f-----~~~-------------~~-------------------~~~~~~~~ 92 (172)
...+.++|+.|+|||++|+.++..+ +..- .+. .| +..+.+++
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~iR~ 100 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAVRE 100 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHHHH
Confidence 5789999999999999999999883 2110 111 11 12334443
Q ss_pred Hh---C-----CCeeEEEEecCC--CHHhHHHHHhhccCCCCCcEEEEEeCChh-HHHhc-CCCceEEcCCCCHHHHHHH
Q 040354 93 RL---T-----RKKLLIVFDDVH--HPRQIDCLIECLDWFASASRIIIISRDKQ-ALISC-GVNKIYQMQELVHADALKL 160 (172)
Q Consensus 93 ~l---~-----~~~~LlvlDdv~--~~~~~~~l~~~~~~~~~~s~iiiTtr~~~-~~~~~-~~~~~~~l~~l~~~~~~~l 160 (172)
.. . +++-++|+|+++ +....+.+...+.....++.+|++|++.. +...+ .....+.+.+++.++..+.
T Consensus 101 l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~ 180 (325)
T PRK08699 101 IIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAY 180 (325)
T ss_pred HHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHH
Confidence 32 1 233455668886 44556666666655445666788887754 33232 2345788999999999887
Q ss_pred Hhhh
Q 040354 161 FSEC 164 (172)
Q Consensus 161 f~~~ 164 (172)
+...
T Consensus 181 L~~~ 184 (325)
T PRK08699 181 LRER 184 (325)
T ss_pred HHhc
Confidence 7654
No 184
>PHA02244 ATPase-like protein
Probab=97.98 E-value=3.5e-05 Score=61.04 Aligned_cols=104 Identities=13% Similarity=0.142 Sum_probs=58.0
Q ss_pred CCCccccccchHH----HHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCcCcc---------------
Q 040354 25 NNNHLVGIESRTE----EIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITRRFEEFPNI--------------- 85 (172)
Q Consensus 25 ~~~~~~Gr~~~~~----~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~--------------- 85 (172)
.+..++|...... .+..++... ..+.|+|++|+|||+||++++......|-....+
T Consensus 94 ~d~~~ig~sp~~~~~~~ri~r~l~~~-----~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~ 168 (383)
T PHA02244 94 IDTTKIASNPTFHYETADIAKIVNAN-----IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGK 168 (383)
T ss_pred CCCcccCCCHHHHHHHHHHHHHHhcC-----CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhccccccccc
Confidence 3445666554443 444444432 4678899999999999999998855444322111
Q ss_pred -cHHHHHHHhCCCeeEEEEecCCCH--HhHHHHHhhcc-----------CCCCCcEEEEEeCC
Q 040354 86 -GLNFQSKRLTRKKLLIVFDDVHHP--RQIDCLIECLD-----------WFASASRIIIISRD 134 (172)
Q Consensus 86 -~~~~~~~~l~~~~~LlvlDdv~~~--~~~~~l~~~~~-----------~~~~~s~iiiTtr~ 134 (172)
....+...+ .+..+|+||+++.. +....|...+. ...++.++|+|+..
T Consensus 169 ~~dgpLl~A~-~~GgvLiLDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~ 230 (383)
T PHA02244 169 FHETPFYEAF-KKGGLFFIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNT 230 (383)
T ss_pred ccchHHHHHh-hcCCEEEEeCcCcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCC
Confidence 000111111 23468999999743 33333333321 11256688888765
No 185
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.96 E-value=2e-05 Score=57.75 Aligned_cols=38 Identities=16% Similarity=-0.000 Sum_probs=25.0
Q ss_pred ccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHH
Q 040354 32 IESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 32 r~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
+..+-....+.|. . ..++.+.|++|+|||.||.+..-+
T Consensus 5 ~~~~Q~~~~~al~--~---~~~v~~~G~AGTGKT~LA~a~Al~ 42 (205)
T PF02562_consen 5 KNEEQKFALDALL--N---NDLVIVNGPAGTGKTFLALAAALE 42 (205)
T ss_dssp -SHHHHHHHHHHH--H----SEEEEE--TTSSTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHH--h---CCeEEEECCCCCcHHHHHHHHHHH
Confidence 3444445555454 1 469999999999999999887766
No 186
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.95 E-value=9.1e-05 Score=58.60 Aligned_cols=85 Identities=11% Similarity=0.121 Sum_probs=58.1
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhccccCc---------------------C-----cc-cHHHHHHHhCCCeeEEEE
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKITRRFEEF---------------------P-----NI-GLNFQSKRLTRKKLLIVF 103 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~---------------------~-----~~-~~~~~~~~l~~~~~Llvl 103 (172)
...+.|+|+.|+||||++..+...+....... . .. ....++..++..+=.|++
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~v 201 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILI 201 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEE
Confidence 36899999999999999999888754321111 0 01 345667778888889999
Q ss_pred ecCCCHHhHHHHHhhccCCCCCcEEEEEeCChhHH
Q 040354 104 DDVHHPRQIDCLIECLDWFASASRIIIISRDKQAL 138 (172)
Q Consensus 104 Ddv~~~~~~~~l~~~~~~~~~~s~iiiTtr~~~~~ 138 (172)
|++-+.+.+....... ..|..++.|.+..+..
T Consensus 202 gEird~~~~~~~l~aa---~tGh~v~~T~Ha~~~~ 233 (343)
T TIGR01420 202 GEMRDLETVELALTAA---ETGHLVFGTLHTNSAA 233 (343)
T ss_pred eCCCCHHHHHHHHHHH---HcCCcEEEEEcCCCHH
Confidence 9998887766544332 2455577777765443
No 187
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.94 E-value=1.5e-05 Score=52.37 Aligned_cols=53 Identities=19% Similarity=0.232 Sum_probs=34.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhccccCc--Ccc----cHHHHHHHhCCCeeEEEEecCC
Q 040354 54 LGISGSGDIGKITIAGAIFNKITRRFEEF--PNI----GLNFQSKRLTRKKLLIVFDDVH 107 (172)
Q Consensus 54 i~I~G~~GiGKTtLa~~~~~~~~~~f~~~--~~~----~~~~~~~~l~~~~~LlvlDdv~ 107 (172)
|.|+|++|+|||+||..++.++.+++... .++ ....+-.-.. +.-.+++||+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~~~w~gY~-~q~vvi~DD~~ 59 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGDKFWDGYQ-GQPVVIIDDFG 59 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCccchhhccC-CCcEEEEeecC
Confidence 57999999999999999998866554221 122 1222222233 34568899995
No 188
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.94 E-value=7.1e-05 Score=52.89 Aligned_cols=97 Identities=14% Similarity=0.260 Sum_probs=56.5
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhc---c--ccCc------------------Ccc-----cHHHHHHHhCCCeeEEEE
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKITR---R--FEEF------------------PNI-----GLNFQSKRLTRKKLLIVF 103 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~~~---~--f~~~------------------~~~-----~~~~~~~~l~~~~~Llvl 103 (172)
.+++|.|+.|+|||||++.++..... . ++.. ..+ ..-.+.+.+..++-++++
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~illl 106 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNARLLIL 106 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCCEEEE
Confidence 58999999999999999999875321 0 1100 001 112233444556789999
Q ss_pred ecCC---CHHhHHHHHhhccCC-CCCcEEEEEeCChhHHHhcCCCceEEc
Q 040354 104 DDVH---HPRQIDCLIECLDWF-ASASRIIIISRDKQALISCGVNKIYQM 149 (172)
Q Consensus 104 Ddv~---~~~~~~~l~~~~~~~-~~~s~iiiTtr~~~~~~~~~~~~~~~l 149 (172)
|+.. |......+...+... ..+..||++|++...+... +++++.+
T Consensus 107 DEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~-~d~~~~l 155 (163)
T cd03216 107 DEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEI-ADRVTVL 155 (163)
T ss_pred ECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 9985 333333333333222 2356699999987755442 2344443
No 189
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.94 E-value=0.00026 Score=55.27 Aligned_cols=46 Identities=9% Similarity=0.195 Sum_probs=35.4
Q ss_pred cchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhcc
Q 040354 33 ESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITRR 78 (172)
Q Consensus 33 ~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 78 (172)
+.-.+.|.+.+.........+++|.|.=|+|||++.+.+..++...
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 3445677777775542337899999999999999999998886555
No 190
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.93 E-value=0.00014 Score=53.04 Aligned_cols=83 Identities=19% Similarity=0.282 Sum_probs=48.9
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhcc-ccCc---Cc-ccHHHHHHH-----------h-------------CCCeeEEE
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKITRR-FEEF---PN-IGLNFQSKR-----------L-------------TRKKLLIV 102 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~~~~-f~~~---~~-~~~~~~~~~-----------l-------------~~~~~Llv 102 (172)
++..|.|++|+||||++..+...+... +... .. .....+.+. + ....-+||
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vli 98 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLI 98 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEE
Confidence 688999999999999999988775443 2222 00 011112221 1 11235999
Q ss_pred EecCC--CHHhHHHHHhhccCCCCCcEEEEEeCChh
Q 040354 103 FDDVH--HPRQIDCLIECLDWFASASRIIIISRDKQ 136 (172)
Q Consensus 103 lDdv~--~~~~~~~l~~~~~~~~~~s~iiiTtr~~~ 136 (172)
+|++. +..++..+...... .++++|+..-..+
T Consensus 99 VDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~Q 132 (196)
T PF13604_consen 99 VDEASMVDSRQLARLLRLAKK--SGAKLILVGDPNQ 132 (196)
T ss_dssp ESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TTS
T ss_pred EecccccCHHHHHHHHHHHHh--cCCEEEEECCcch
Confidence 99996 45567777665543 5778888775544
No 191
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=6.4e-05 Score=63.61 Aligned_cols=57 Identities=21% Similarity=0.288 Sum_probs=41.9
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhccccCc------Cc-----c------cHHHHHHHhCCCeeEEEEecCC
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKITRRFEEF------PN-----I------GLNFQSKRLTRKKLLIVFDDVH 107 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~------~~-----~------~~~~~~~~l~~~~~LlvlDdv~ 107 (172)
.+.|.|.|+.|+|||+||+++++++.....+. +. + +...+.+.+...+.++||||++
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld 504 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLD 504 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchh
Confidence 47899999999999999999999855431111 11 1 3444455566789999999996
No 192
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.92 E-value=9e-05 Score=52.82 Aligned_cols=96 Identities=20% Similarity=0.275 Sum_probs=56.6
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhc---c--ccCc-----------------------------Cc-c-----cHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKITR---R--FEEF-----------------------------PN-I-----GLNFQS 91 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~~~---~--f~~~-----------------------------~~-~-----~~~~~~ 91 (172)
.+++|.|+.|+|||||++.++..... . |+.. ++ + ..-.+.
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~qrv~la 108 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQRLGLA 108 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHHHHHHHH
Confidence 58999999999999999999875221 0 1100 01 1 112233
Q ss_pred HHhCCCeeEEEEecCC---CHHhHHHHHhhccCC-CCCcEEEEEeCChhHHHhcCCCceEEc
Q 040354 92 KRLTRKKLLIVFDDVH---HPRQIDCLIECLDWF-ASASRIIIISRDKQALISCGVNKIYQM 149 (172)
Q Consensus 92 ~~l~~~~~LlvlDdv~---~~~~~~~l~~~~~~~-~~~s~iiiTtr~~~~~~~~~~~~~~~l 149 (172)
..+..++-++++|+.. |......+...+... ..|..||++|++..... . +++++.+
T Consensus 109 ~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~-~-~d~v~~l 168 (173)
T cd03246 109 RALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA-S-ADRILVL 168 (173)
T ss_pred HHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-h-CCEEEEE
Confidence 4445567789999985 333333333222211 23667999999887664 3 4555554
No 193
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.92 E-value=0.00013 Score=52.23 Aligned_cols=96 Identities=15% Similarity=0.205 Sum_probs=56.9
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhc---c--ccCc----------------------------Cc----c-----cHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKITR---R--FEEF----------------------------PN----I-----GLNF 89 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~~~---~--f~~~----------------------------~~----~-----~~~~ 89 (172)
.+++|.|+.|+|||||++.++..... . |+.. ++ + ..-.
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~~qrv~ 108 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGERQRLA 108 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHHHHHHHH
Confidence 58999999999999999998875221 0 1100 11 1 1122
Q ss_pred HHHHhCCCeeEEEEecCC---CHHhHHHHHhhccCCCCCcEEEEEeCChhHHHhcCCCceEEc
Q 040354 90 QSKRLTRKKLLIVFDDVH---HPRQIDCLIECLDWFASASRIIIISRDKQALISCGVNKIYQM 149 (172)
Q Consensus 90 ~~~~l~~~~~LlvlDdv~---~~~~~~~l~~~~~~~~~~s~iiiTtr~~~~~~~~~~~~~~~l 149 (172)
+...+..++-++++|+.. |....+.+...+.....+..||++|++...... .++++.+
T Consensus 109 laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l 169 (178)
T cd03247 109 LARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEH--MDKILFL 169 (178)
T ss_pred HHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 333445567899999995 333333333333222235679999998877653 4555544
No 194
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.91 E-value=8.7e-05 Score=55.94 Aligned_cols=51 Identities=14% Similarity=0.286 Sum_probs=33.0
Q ss_pred HHHHHHhCCCeeEEEEecCC---CHH---hHHHHHhhccCCCCCcEEEEEeCChhHHHh
Q 040354 88 NFQSKRLTRKKLLIVFDDVH---HPR---QIDCLIECLDWFASASRIIIISRDKQALIS 140 (172)
Q Consensus 88 ~~~~~~l~~~~~LlvlDdv~---~~~---~~~~l~~~~~~~~~~s~iiiTtr~~~~~~~ 140 (172)
-.+.+.|..++=||+||+-. |.. .+-.++..+.. .|+.|+++|+|-+....
T Consensus 148 V~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~--eg~tIl~vtHDL~~v~~ 204 (254)
T COG1121 148 VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ--EGKTVLMVTHDLGLVMA 204 (254)
T ss_pred HHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCcHHhHh
Confidence 44556677788899999873 222 23333333332 38889999999776655
No 195
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.91 E-value=7.6e-05 Score=53.56 Aligned_cols=97 Identities=13% Similarity=0.238 Sum_probs=56.4
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhcc-----ccCc----------------------------------Ccc-----cH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKITRR-----FEEF----------------------------------PNI-----GL 87 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~~~~-----f~~~----------------------------------~~~-----~~ 87 (172)
.+++|.|+.|+|||||++.++...... ++.. ..+ ..
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~qr 105 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGERQR 105 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHHHHH
Confidence 599999999999999999988752210 1100 011 11
Q ss_pred HHHHHHhCCCeeEEEEecCC---CHHhHHHHHhhccCCC-C-CcEEEEEeCChhHHHhcCCCceEEc
Q 040354 88 NFQSKRLTRKKLLIVFDDVH---HPRQIDCLIECLDWFA-S-ASRIIIISRDKQALISCGVNKIYQM 149 (172)
Q Consensus 88 ~~~~~~l~~~~~LlvlDdv~---~~~~~~~l~~~~~~~~-~-~s~iiiTtr~~~~~~~~~~~~~~~l 149 (172)
-.+.+.+...+-++++|+.. |......+...+.... . +..||++|++......+ +++++.+
T Consensus 106 l~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~-~d~~~~l 171 (180)
T cd03214 106 VLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARY-ADRVILL 171 (180)
T ss_pred HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 22333344567799999984 3333333333333221 2 56799999987765443 2344433
No 196
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.90 E-value=1.8e-05 Score=59.82 Aligned_cols=26 Identities=31% Similarity=0.273 Sum_probs=23.3
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhc
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKITR 77 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~~~ 77 (172)
..+.|.|++|+|||||++.+++.+..
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccc
Confidence 68999999999999999999998543
No 197
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.90 E-value=0.0002 Score=54.73 Aligned_cols=87 Identities=14% Similarity=0.151 Sum_probs=58.1
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhcc-----ccCc--------------------Cc----------c-cHHHHHHHh
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKITRR-----FEEF--------------------PN----------I-GLNFQSKRL 94 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~-----f~~~--------------------~~----------~-~~~~~~~~l 94 (172)
...+.|.|++|+|||||++.++..+... |+.. .+ . -...+...+
T Consensus 111 ~~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i 190 (270)
T TIGR02858 111 VLNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLI 190 (270)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHH
Confidence 4789999999999999999998774332 1111 00 0 111223333
Q ss_pred C-CCeeEEEEecCCCHHhHHHHHhhccCCCCCcEEEEEeCChhHHHh
Q 040354 95 T-RKKLLIVFDDVHHPRQIDCLIECLDWFASASRIIIISRDKQALIS 140 (172)
Q Consensus 95 ~-~~~~LlvlDdv~~~~~~~~l~~~~~~~~~~s~iiiTtr~~~~~~~ 140 (172)
. ..+-++++|++...+.+..+...+. .|..+|+|+++..+...
T Consensus 191 ~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~~~~ 234 (270)
T TIGR02858 191 RSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDVEDL 234 (270)
T ss_pred HhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHHHHH
Confidence 3 4678999999987777776665553 47779999998766433
No 198
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.89 E-value=9.6e-05 Score=58.16 Aligned_cols=100 Identities=17% Similarity=0.182 Sum_probs=60.9
Q ss_pred cccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHH---HhccccCc-------------------------
Q 040354 31 GIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNK---ITRRFEEF------------------------- 82 (172)
Q Consensus 31 Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~---~~~~f~~~------------------------- 82 (172)
+|..+..--.++|..+. ...|.+.|.+|+|||-||.+..-. .+..|...
T Consensus 228 prn~eQ~~ALdlLld~d---I~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~ 304 (436)
T COG1875 228 PRNAEQRVALDLLLDDD---IDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMG 304 (436)
T ss_pred cccHHHHHHHHHhcCCC---CCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhcc
Confidence 35555555556666554 789999999999999998664433 12222222
Q ss_pred -------Ccc---------cHHHHHHHh-------------CC---CeeEEEEecCCCHHhHHHHHhhccCCCCCcEEEE
Q 040354 83 -------PNI---------GLNFQSKRL-------------TR---KKLLIVFDDVHHPRQIDCLIECLDWFASASRIII 130 (172)
Q Consensus 83 -------~~~---------~~~~~~~~l-------------~~---~~~LlvlDdv~~~~~~~~l~~~~~~~~~~s~iii 130 (172)
+++ ....+...+ ++ .+.++|+|++.+..- .++...+.+.+.||||++
T Consensus 305 PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTp-heikTiltR~G~GsKIVl 383 (436)
T COG1875 305 PWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTP-HELKTILTRAGEGSKIVL 383 (436)
T ss_pred chHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCH-HHHHHHHHhccCCCEEEE
Confidence 111 111222221 22 246899999987653 233445567789999999
Q ss_pred EeCC
Q 040354 131 ISRD 134 (172)
Q Consensus 131 Ttr~ 134 (172)
|.-.
T Consensus 384 ~gd~ 387 (436)
T COG1875 384 TGDP 387 (436)
T ss_pred cCCH
Confidence 8754
No 199
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=0.00013 Score=54.03 Aligned_cols=52 Identities=13% Similarity=0.198 Sum_probs=33.6
Q ss_pred CCeeEEEEecCCC---HHhHHHHHhhccCC-CCCcEEEEEeCChhHHHhcCCCceE
Q 040354 96 RKKLLIVFDDVHH---PRQIDCLIECLDWF-ASASRIIIISRDKQALISCGVNKIY 147 (172)
Q Consensus 96 ~~~~LlvlDdv~~---~~~~~~l~~~~~~~-~~~s~iiiTtr~~~~~~~~~~~~~~ 147 (172)
-++-+.|||+.++ .+.++.+...+... .+++-+++.|+...++..+.++.++
T Consensus 161 lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 161 LEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred cCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEE
Confidence 3567899999984 44444443333322 2566688889988888887655443
No 200
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.86 E-value=0.00026 Score=54.07 Aligned_cols=82 Identities=7% Similarity=0.078 Sum_probs=55.7
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhcc-ccCc-------------------C--cc-cHHHHHHHhCCCeeEEEEecCCC
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKITRR-FEEF-------------------P--NI-GLNFQSKRLTRKKLLIVFDDVHH 108 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~~~~-f~~~-------------------~--~~-~~~~~~~~l~~~~~LlvlDdv~~ 108 (172)
..+.|.|+.|+||||++..+...+... .... . .. ..+.++..++..+-.|+++++-+
T Consensus 81 GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~ 160 (264)
T cd01129 81 GIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIRD 160 (264)
T ss_pred CEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCCC
Confidence 689999999999999999888775321 1000 1 11 46777888888889999999988
Q ss_pred HHhHHHHHhhccCCCCCcEEEEEeCChh
Q 040354 109 PRQIDCLIECLDWFASASRIIIISRDKQ 136 (172)
Q Consensus 109 ~~~~~~l~~~~~~~~~~s~iiiTtr~~~ 136 (172)
.+....+..... .|-.++-|.+-.+
T Consensus 161 ~e~a~~~~~aa~---tGh~v~tTlHa~~ 185 (264)
T cd01129 161 AETAEIAVQAAL---TGHLVLSTLHTND 185 (264)
T ss_pred HHHHHHHHHHHH---cCCcEEEEeccCC
Confidence 876555443433 3443555555443
No 201
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.85 E-value=0.00043 Score=54.04 Aligned_cols=137 Identities=16% Similarity=0.171 Sum_probs=80.7
Q ss_pred CccccccchHHHHHHHhcCC--CCCCeeEEEEEcCCCchHHHHHHHHHHH---HhccccCc-------------------
Q 040354 27 NHLVGIESRTEEIESVLGVG--STMNICKLGISGSGDIGKITIAGAIFNK---ITRRFEEF------------------- 82 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~--~~~~~~~i~I~G~~GiGKTtLa~~~~~~---~~~~f~~~------------------- 82 (172)
-.++|-.++...+..|+.+. -++ ...+.|+||.|+|||+|......+ +.++|-.+
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gE-snsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rq 102 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGE-SNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQ 102 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcC-CCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHHH
Confidence 44899999999998888732 112 468899999999999998766665 34444433
Q ss_pred ------------Ccc--cHHHHHHHhC------CCeeEEEEecCCCH----Hh--HHHHHhhcc-CCCCCcEEEEEeCCh
Q 040354 83 ------------PNI--GLNFQSKRLT------RKKLLIVFDDVHHP----RQ--IDCLIECLD-WFASASRIIIISRDK 135 (172)
Q Consensus 83 ------------~~~--~~~~~~~~l~------~~~~LlvlDdv~~~----~~--~~~l~~~~~-~~~~~s~iiiTtr~~ 135 (172)
.++ ....+-..++ +.++++|+|++|-. .| +-.++.... ...|-|-|-+|||-.
T Consensus 103 l~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld 182 (408)
T KOG2228|consen 103 LALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLD 182 (408)
T ss_pred HHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecccc
Confidence 111 1222223332 23689999999732 11 222222222 223445566888864
Q ss_pred hHH-------HhcCCCceEEcCCCCHHHHHHHHhhh
Q 040354 136 QAL-------ISCGVNKIYQMQELVHADALKLFSEC 164 (172)
Q Consensus 136 ~~~-------~~~~~~~~~~l~~l~~~~~~~lf~~~ 164 (172)
.+- ....-..++-+++++-++...++++.
T Consensus 183 ~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~l 218 (408)
T KOG2228|consen 183 ILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKL 218 (408)
T ss_pred HHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHH
Confidence 321 11122235667888888888887765
No 202
>PRK13695 putative NTPase; Provisional
Probab=97.84 E-value=0.00036 Score=49.71 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=20.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 040354 53 KLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 53 ~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
.+.|+|++|+|||||+..+++..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999987764
No 203
>PRK07667 uridine kinase; Provisional
Probab=97.84 E-value=3.7e-05 Score=55.89 Aligned_cols=40 Identities=23% Similarity=0.309 Sum_probs=31.1
Q ss_pred HHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 36 TEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 36 ~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
++.+.+.+...... ..+|+|.|.+|+||||+|+.+...+.
T Consensus 3 ~~~~~~~~~~~~~~-~~iIgI~G~~gsGKStla~~L~~~l~ 42 (193)
T PRK07667 3 TNELINIMKKHKEN-RFILGIDGLSRSGKTTFVANLKENMK 42 (193)
T ss_pred HHHHHHHHHhcCCC-CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45566666544444 68999999999999999999988754
No 204
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.83 E-value=2.6e-05 Score=66.02 Aligned_cols=57 Identities=16% Similarity=0.216 Sum_probs=37.8
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhccccCc----Ccc-----cHHHHHHHhC--------CCeeEEEEecCCCH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKITRRFEEF----PNI-----GLNFQSKRLT--------RKKLLIVFDDVHHP 109 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~----~~~-----~~~~~~~~l~--------~~~~LlvlDdv~~~ 109 (172)
.+++.++|++|.||||||.-++.+-. |... +|- ....+...+. +++.-||+|+++..
T Consensus 326 kKilLL~GppGlGKTTLAHViAkqaG--YsVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 326 KKILLLCGPPGLGKTTLAHVIAKQAG--YSVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGA 399 (877)
T ss_pred cceEEeecCCCCChhHHHHHHHHhcC--ceEEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEEecccCC
Confidence 58999999999999999999998622 2222 111 2223332222 45667999999843
No 205
>PRK08118 topology modulation protein; Reviewed
Probab=97.83 E-value=1.7e-05 Score=56.41 Aligned_cols=25 Identities=36% Similarity=0.440 Sum_probs=22.1
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
+.|.|+|++|+||||||+.+++...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3589999999999999999999843
No 206
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.83 E-value=3.9e-05 Score=52.63 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 040354 53 KLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 53 ~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
++.++|++|+||||+|+.+...
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999865
No 207
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.83 E-value=2.6e-05 Score=64.95 Aligned_cols=49 Identities=22% Similarity=0.176 Sum_probs=40.1
Q ss_pred ccccccchHHHHHHHhc----CCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhc
Q 040354 28 HLVGIESRTEEIESVLG----VGSTMNICKLGISGSGDIGKITIAGAIFNKITR 77 (172)
Q Consensus 28 ~~~Gr~~~~~~l~~~l~----~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~ 77 (172)
+++|.++.+++|.+.|. ..... .+++.++||+|+||||||+.+..-+..
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~-~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEK-KQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCC-CceEEEecCCCCCchHHHHHHHHHHHh
Confidence 58999999999999883 22222 589999999999999999999987443
No 208
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.82 E-value=0.00024 Score=51.00 Aligned_cols=96 Identities=17% Similarity=0.208 Sum_probs=55.7
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH---H--hcc--------------------ccCc--------Ccc-----cHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK---I--TRR--------------------FEEF--------PNI-----GLNFQSKR 93 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~---~--~~~--------------------f~~~--------~~~-----~~~~~~~~ 93 (172)
.+++|.|+.|+|||||.+.+..+ + ... |... ..+ ..-.+...
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~lara 101 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASE 101 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHH
Confidence 68999999999999999988632 1 111 0000 111 12223344
Q ss_pred hCCC--eeEEEEecCC---CHHhHHHHHhhccCC-CCCcEEEEEeCChhHHHhcCCCceEEc
Q 040354 94 LTRK--KLLIVFDDVH---HPRQIDCLIECLDWF-ASASRIIIISRDKQALISCGVNKIYQM 149 (172)
Q Consensus 94 l~~~--~~LlvlDdv~---~~~~~~~l~~~~~~~-~~~s~iiiTtr~~~~~~~~~~~~~~~l 149 (172)
+..+ +-++++|+.. +......+...+... ..|..||++|++...... .++++.+
T Consensus 102 l~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 102 LFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred HhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 4456 7889999984 333333333333221 146679999999877643 4555555
No 209
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=97.82 E-value=0.00012 Score=57.54 Aligned_cols=45 Identities=20% Similarity=0.139 Sum_probs=33.9
Q ss_pred cccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHH
Q 040354 29 LVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 29 ~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
++|....+..+.+.+..-... ...|.|+|.+|+||+++|+.++..
T Consensus 1 liG~S~~m~~~~~~~~~~a~~-~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPL-DRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCC-CCCEEEECCCCChHHHHHHHHHHh
Confidence 357777777776666533222 467899999999999999999876
No 210
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=0.00037 Score=52.53 Aligned_cols=134 Identities=15% Similarity=0.258 Sum_probs=78.9
Q ss_pred ccc-ccchHHHHHHHhcCCC----------CCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCcC--cc-------cHH
Q 040354 29 LVG-IESRTEEIESVLGVGS----------TMNICKLGISGSGDIGKITIAGAIFNKITRRFEEFP--NI-------GLN 88 (172)
Q Consensus 29 ~~G-r~~~~~~l~~~l~~~~----------~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~--~~-------~~~ 88 (172)
.+| .+..+++|.+.+.-.- -.++.-+.++|++|.|||-||++++.+..-.|-..+ .+ ...
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~igegsr 227 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSR 227 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHhhhhHH
Confidence 454 5666677766554211 112577899999999999999999988555554431 11 233
Q ss_pred HHHHHh----CCCeeEEEEecCCCHH----------------hHHHHHhhccCCC--CCcEEEEEeCChhHHHh-----c
Q 040354 89 FQSKRL----TRKKLLIVFDDVHHPR----------------QIDCLIECLDWFA--SASRIIIISRDKQALIS-----C 141 (172)
Q Consensus 89 ~~~~~l----~~~~~LlvlDdv~~~~----------------~~~~l~~~~~~~~--~~s~iiiTtr~~~~~~~-----~ 141 (172)
.+++.+ ..-+.+|++|++++.. ..-.+++.+.-+. +..+||..|..-+++.. -
T Consensus 228 mvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpg 307 (404)
T KOG0728|consen 228 MVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPG 307 (404)
T ss_pred HHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCC
Confidence 333332 2347899999997431 1233444554333 45567765543333222 1
Q ss_pred CCCceEEcCCCCHHHHHHHHh
Q 040354 142 GVNKIYQMQELVHADALKLFS 162 (172)
Q Consensus 142 ~~~~~~~l~~l~~~~~~~lf~ 162 (172)
..++.++.++-+++.-.++++
T Consensus 308 ridrkiefp~p~e~ar~~ilk 328 (404)
T KOG0728|consen 308 RIDRKIEFPPPNEEARLDILK 328 (404)
T ss_pred cccccccCCCCCHHHHHHHHH
Confidence 234567888888877766665
No 211
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.81 E-value=3.5e-05 Score=61.49 Aligned_cols=31 Identities=26% Similarity=0.145 Sum_probs=25.7
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhc-cccCc
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKITR-RFEEF 82 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~~~-~f~~~ 82 (172)
....|+|++|+||||||+.+++.+.. +|+..
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~ 201 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTNHPEVH 201 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhhcCCeE
Confidence 57889999999999999999998543 56554
No 212
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=97.80 E-value=0.00013 Score=57.26 Aligned_cols=47 Identities=19% Similarity=0.145 Sum_probs=38.3
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHH
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
+.++|+...+..+.+.+..-... ...|.|+|.+|+||+++|+.++..
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~-~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPL-DKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCC-CCCEEEECCCCCcHHHHHHHHHHh
Confidence 56899999998888877633333 468899999999999999999875
No 213
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=97.80 E-value=7.6e-05 Score=60.36 Aligned_cols=55 Identities=15% Similarity=0.254 Sum_probs=38.8
Q ss_pred CCccccccchHHHHHHHhc-------CC-----C-CCCeeEEEEEcCCCchHHHHHHHHHHHHhcccc
Q 040354 26 NNHLVGIESRTEEIESVLG-------VG-----S-TMNICKLGISGSGDIGKITIAGAIFNKITRRFE 80 (172)
Q Consensus 26 ~~~~~Gr~~~~~~l~~~l~-------~~-----~-~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~ 80 (172)
...++|.+...+.+...+. .. . .-....+.++|++|+|||+||+.++......|.
T Consensus 70 ~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~ 137 (412)
T PRK05342 70 DQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFA 137 (412)
T ss_pred hhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCce
Confidence 4568999988887754431 10 0 001367899999999999999999987655554
No 214
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=0.00032 Score=60.17 Aligned_cols=139 Identities=14% Similarity=0.164 Sum_probs=84.3
Q ss_pred Cccccccch---HHHHHHHhcCCC------CCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc--Ccc-------cHH
Q 040354 27 NHLVGIESR---TEEIESVLGVGS------TMNICKLGISGSGDIGKITIAGAIFNKITRRFEEF--PNI-------GLN 88 (172)
Q Consensus 27 ~~~~Gr~~~---~~~l~~~l~~~~------~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~--~~~-------~~~ 88 (172)
.++-|-++. +.+++++|.... -.-++=+.|+|++|+|||-||++++.+-.-.|-.. .++ ...
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~as 390 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGAS 390 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccchH
Confidence 456676654 445555665321 11157789999999999999999999865555544 111 345
Q ss_pred HHHHHhC----CCeeEEEEecCCCH-----------------HhHHHHHhhccCCCCCcEEEE--EeCChhHH-Hh-c--
Q 040354 89 FQSKRLT----RKKLLIVFDDVHHP-----------------RQIDCLIECLDWFASASRIII--ISRDKQAL-IS-C-- 141 (172)
Q Consensus 89 ~~~~~l~----~~~~LlvlDdv~~~-----------------~~~~~l~~~~~~~~~~s~iii--Ttr~~~~~-~~-~-- 141 (172)
.++..+. ..++++.+|+++.. ..+++++..++-+...+.||+ +|...+++ .. +
T Consensus 391 rvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrp 470 (774)
T KOG0731|consen 391 RVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRP 470 (774)
T ss_pred HHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCC
Confidence 5555554 35789999988621 236777777765554443333 33333322 22 1
Q ss_pred -CCCceEEcCCCCHHHHHHHHhhhc
Q 040354 142 -GVNKIYQMQELVHADALKLFSECA 165 (172)
Q Consensus 142 -~~~~~~~l~~l~~~~~~~lf~~~a 165 (172)
.-++.+.+..-+.....++|..++
T Consensus 471 GRfdr~i~i~~p~~~~r~~i~~~h~ 495 (774)
T KOG0731|consen 471 GRFDRQIQIDLPDVKGRASILKVHL 495 (774)
T ss_pred CccccceeccCCchhhhHHHHHHHh
Confidence 134466777777777777777664
No 215
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.79 E-value=0.0002 Score=53.18 Aligned_cols=59 Identities=14% Similarity=0.296 Sum_probs=34.2
Q ss_pred HHHHhCCCeeEEEEecCC---CHHhHHHHHhhccCC--CCCcEEEEEeCChhHHHhcCCCceEEcC
Q 040354 90 QSKRLTRKKLLIVFDDVH---HPRQIDCLIECLDWF--ASASRIIIISRDKQALISCGVNKIYQMQ 150 (172)
Q Consensus 90 ~~~~l~~~~~LlvlDdv~---~~~~~~~l~~~~~~~--~~~s~iiiTtr~~~~~~~~~~~~~~~l~ 150 (172)
+.+.+-..+-+|+-|+-. |...-+.+...+... ..|..||+.|+|..++..+ ++++.+.
T Consensus 153 IARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~--dr~i~l~ 216 (226)
T COG1136 153 IARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYA--DRVIELK 216 (226)
T ss_pred HHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhC--CEEEEEe
Confidence 334445566788999874 222222222222211 2467799999999999874 4455543
No 216
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.79 E-value=2.1e-05 Score=52.74 Aligned_cols=22 Identities=41% Similarity=0.622 Sum_probs=20.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHH
Q 040354 54 LGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 54 i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
|+|.|.+|+||||+|+.+....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999998874
No 217
>PRK04296 thymidine kinase; Provisional
Probab=97.78 E-value=0.00025 Score=51.42 Aligned_cols=83 Identities=19% Similarity=0.103 Sum_probs=49.1
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhcc------c----cCc--------------Cc--c-cHHHHHHHh--CC-CeeEE
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKITRR------F----EEF--------------PN--I-GLNFQSKRL--TR-KKLLI 101 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~~~~------f----~~~--------------~~--~-~~~~~~~~l--~~-~~~Ll 101 (172)
.+..++|++|+||||+|..++.....+ | +.. .. . ....+...+ .. +.-+|
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~dvv 82 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEEEGEKIDCV 82 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHhhCCCCCEE
Confidence 578899999999999998888763211 1 111 00 0 111222222 22 34589
Q ss_pred EEecCCC--HHhHHHHHhhccCCCCCcEEEEEeCChh
Q 040354 102 VFDDVHH--PRQIDCLIECLDWFASASRIIIISRDKQ 136 (172)
Q Consensus 102 vlDdv~~--~~~~~~l~~~~~~~~~~s~iiiTtr~~~ 136 (172)
|+|++.- .++...+...+. ..|..||+|.++.+
T Consensus 83 iIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~ 117 (190)
T PRK04296 83 LIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTD 117 (190)
T ss_pred EEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCcc
Confidence 9999953 344444444432 25777999999843
No 218
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.78 E-value=0.00015 Score=50.30 Aligned_cols=23 Identities=26% Similarity=0.225 Sum_probs=20.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 040354 53 KLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 53 ~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
++.|+|++|+||||++..++...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH
Confidence 36799999999999999998874
No 219
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.77 E-value=0.00014 Score=54.12 Aligned_cols=23 Identities=35% Similarity=0.414 Sum_probs=21.2
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|+|++|+|||||++.++.-
T Consensus 34 e~lgivGeSGsGKSTL~r~l~Gl 56 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAGL 56 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhcc
Confidence 58999999999999999998864
No 220
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=97.77 E-value=0.00024 Score=59.21 Aligned_cols=57 Identities=19% Similarity=0.331 Sum_probs=38.0
Q ss_pred HHhCCCeeEEEEecCCC---HHhHHHHHhhccCCCCCcEEEEEeCChhHHHhcCCCceEEcCC
Q 040354 92 KRLTRKKLLIVFDDVHH---PRQIDCLIECLDWFASASRIIIISRDKQALISCGVNKIYQMQE 151 (172)
Q Consensus 92 ~~l~~~~~LlvlDdv~~---~~~~~~l~~~~~~~~~~s~iiiTtr~~~~~~~~~~~~~~~l~~ 151 (172)
..+..++-+||||+-.| .+..+.+-..+.. -+|+ ||+.|+|+....... .+++.+.+
T Consensus 452 ~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~-f~Gt-vl~VSHDr~Fl~~va-~~i~~~~~ 511 (530)
T COG0488 452 KLLLQPPNLLLLDEPTNHLDIESLEALEEALLD-FEGT-VLLVSHDRYFLDRVA-TRIWLVED 511 (530)
T ss_pred HHhccCCCEEEEcCCCccCCHHHHHHHHHHHHh-CCCe-EEEEeCCHHHHHhhc-ceEEEEcC
Confidence 33445677999999864 4445555544432 2455 999999999888863 55676664
No 221
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.00072 Score=57.92 Aligned_cols=130 Identities=17% Similarity=0.187 Sum_probs=75.0
Q ss_pred ccccccchHHHHHHHhcC----------CCCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc-----Ccc----cHH
Q 040354 28 HLVGIESRTEEIESVLGV----------GSTMNICKLGISGSGDIGKITIAGAIFNKITRRFEEF-----PNI----GLN 88 (172)
Q Consensus 28 ~~~Gr~~~~~~l~~~l~~----------~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~-----~~~----~~~ 88 (172)
++=|-++....|.+-+.- +-.. ..-|.+||++|+|||-||++++.+-.-.|-.+ -|+ -.+
T Consensus 673 DVGGLeevK~eIldTIqlPL~hpeLfssglrk-RSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqSE~ 751 (953)
T KOG0736|consen 673 DVGGLEEVKTEILDTIQLPLKHPELFSSGLRK-RSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQSEE 751 (953)
T ss_pred cccCHHHHHHHHHHHhcCcccChhhhhccccc-cceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcchHH
Confidence 344566666666655442 2122 45689999999999999999999866666544 111 223
Q ss_pred HHHHHh----CCCeeEEEEecCCCHH---------------hHHHHHhhccCCCC----CcEEEEEeCChhHHHh--c--
Q 040354 89 FQSKRL----TRKKLLIVFDDVHHPR---------------QIDCLIECLDWFAS----ASRIIIISRDKQALIS--C-- 141 (172)
Q Consensus 89 ~~~~~l----~~~~~LlvlDdv~~~~---------------~~~~l~~~~~~~~~----~s~iiiTtr~~~~~~~--~-- 141 (172)
.+++.+ ...+|+|.||++|+.. -..+++.-++-.+. +--||=.|...++... +
T Consensus 752 NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRP 831 (953)
T KOG0736|consen 752 NVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRP 831 (953)
T ss_pred HHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCC
Confidence 333333 3478999999998541 13445544443332 2234433433333322 1
Q ss_pred -CCCceEEcCCCCHHHHH
Q 040354 142 -GVNKIYQMQELVHADAL 158 (172)
Q Consensus 142 -~~~~~~~l~~l~~~~~~ 158 (172)
.-++.+.+.+-+++++.
T Consensus 832 GRFDKLvyvG~~~d~esk 849 (953)
T KOG0736|consen 832 GRFDKLVYVGPNEDAESK 849 (953)
T ss_pred CccceeEEecCCccHHHH
Confidence 23456677777776654
No 222
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.77 E-value=0.00018 Score=54.36 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=21.3
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|+.|+|||||++.++..
T Consensus 26 e~~~i~G~NGsGKSTLlk~L~G~ 48 (246)
T cd03237 26 EVIGILGPNGIGKTTFIKMLAGV 48 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999998875
No 223
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.77 E-value=0.00016 Score=50.97 Aligned_cols=85 Identities=14% Similarity=0.230 Sum_probs=50.7
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH-Hhcc-------ccCc-----------------------------Ccc---------
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK-ITRR-------FEEF-----------------------------PNI--------- 85 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~-~~~~-------f~~~-----------------------------~~~--------- 85 (172)
..+-|++..|.||||+|...+-. .... |-.. .+.
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a~~ 82 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAAAE 82 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHHHH
Confidence 57888988999999999776655 1111 1111 011
Q ss_pred cHHHHHHHhCCCe-eEEEEecCC-----CHHhHHHHHhhccCCCCCcEEEEEeCChh
Q 040354 86 GLNFQSKRLTRKK-LLIVFDDVH-----HPRQIDCLIECLDWFASASRIIIISRDKQ 136 (172)
Q Consensus 86 ~~~~~~~~l~~~~-~LlvlDdv~-----~~~~~~~l~~~~~~~~~~s~iiiTtr~~~ 136 (172)
.....++.+.... =|+|||++. ..-..+.+...+.....+.-+|+|.|+..
T Consensus 83 ~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 83 GWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 2233334444433 599999994 22234445544444445667999999854
No 224
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.77 E-value=0.0002 Score=50.10 Aligned_cols=97 Identities=16% Similarity=0.243 Sum_probs=58.6
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhcc-----ccCc--C---------------cc-----cHHHHHHHhCCCeeEEEEe
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKITRR-----FEEF--P---------------NI-----GLNFQSKRLTRKKLLIVFD 104 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~~~~-----f~~~--~---------------~~-----~~~~~~~~l~~~~~LlvlD 104 (172)
.+++|.|+.|+|||||++.+...+... |+.. . .+ ..-.+...+...+-++++|
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i~ilD 105 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDLLLLD 105 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 589999999999999999998763211 1110 0 01 1122344445567899999
Q ss_pred cCC---CHHhHHHHHhhccCC-CCCcEEEEEeCChhHHHhcCCCceEEc
Q 040354 105 DVH---HPRQIDCLIECLDWF-ASASRIIIISRDKQALISCGVNKIYQM 149 (172)
Q Consensus 105 dv~---~~~~~~~l~~~~~~~-~~~s~iiiTtr~~~~~~~~~~~~~~~l 149 (172)
+.. |......+...+... ..+..++++|++......+ +++++.+
T Consensus 106 Ep~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~-~d~i~~l 153 (157)
T cd00267 106 EPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA-ADRVIVL 153 (157)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 995 333333333333221 1245699999988777664 3455544
No 225
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.76 E-value=0.00018 Score=53.20 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=21.1
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|+.|+|||||++.++.-
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 29 EIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998864
No 226
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.76 E-value=0.00013 Score=55.72 Aligned_cols=99 Identities=18% Similarity=0.214 Sum_probs=63.5
Q ss_pred hHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhcc-ccCc--------------------C--cc-cHHHH
Q 040354 35 RTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITRR-FEEF--------------------P--NI-GLNFQ 90 (172)
Q Consensus 35 ~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~-f~~~--------------------~--~~-~~~~~ 90 (172)
..+.+.++|...-.. .+.+.|.|+.|+||||++..++..+... .... . .. ..+.+
T Consensus 112 ~~~~~~~~l~~~v~~-~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~~~~~~~~~~~~~~~~~~l 190 (270)
T PF00437_consen 112 IPEEIAEFLRSAVRG-RGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGPNQIQIQTRRDEISYEDLL 190 (270)
T ss_dssp CHHHHHHHHHHCHHT-TEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCSSEEEEEEETTTBSHHHHH
T ss_pred hHHHHHHHHhhcccc-ceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecccceEEEEeecCcccHHHHH
Confidence 344555555533111 4899999999999999999999885443 1111 1 12 57788
Q ss_pred HHHhCCCeeEEEEecCCCHHhHHHHHhhccCCCCCcEE-EEEeCChhHH
Q 040354 91 SKRLTRKKLLIVFDDVHHPRQIDCLIECLDWFASASRI-IIISRDKQAL 138 (172)
Q Consensus 91 ~~~l~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~~s~i-iiTtr~~~~~ 138 (172)
+..++..+=.++++++-+.+.+.. ..... .|..+ +-|.+-.+..
T Consensus 191 ~~~LR~~pD~iiigEiR~~e~~~~-~~a~~---tGh~~~~tT~Ha~s~~ 235 (270)
T PF00437_consen 191 KSALRQDPDVIIIGEIRDPEAAEA-IQAAN---TGHLGSLTTLHANSAE 235 (270)
T ss_dssp HHHTTS--SEEEESCE-SCHHHHH-HHHHH---TT-EEEEEEEE-SSHH
T ss_pred HHHhcCCCCcccccccCCHhHHHH-HHhhc---cCCceeeeeeecCCHH
Confidence 888998888999999988777766 33333 66677 6666655443
No 227
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=5.4e-05 Score=58.19 Aligned_cols=81 Identities=15% Similarity=0.158 Sum_probs=54.6
Q ss_pred CccccccchHHHHHHHhc----------CCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc-------Ccc----
Q 040354 27 NHLVGIESRTEEIESVLG----------VGSTMNICKLGISGSGDIGKITIAGAIFNKITRRFEEF-------PNI---- 85 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~----------~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~-------~~~---- 85 (172)
+++-|.+...+.|.+... ..... -+-+.++|++|.||+.||++++.+..+.|-.+ .++
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~P-wrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESE 211 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKP-WRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESE 211 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCc-ceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHH
Confidence 456677777777765332 12222 57899999999999999999999865555444 122
Q ss_pred -cHHHHHHHhC-CCeeEEEEecCCC
Q 040354 86 -GLNFQSKRLT-RKKLLIVFDDVHH 108 (172)
Q Consensus 86 -~~~~~~~~l~-~~~~LlvlDdv~~ 108 (172)
+...+.+..+ +++.+|++|+|+.
T Consensus 212 kLVknLFemARe~kPSIIFiDEiDs 236 (439)
T KOG0739|consen 212 KLVKNLFEMARENKPSIIFIDEIDS 236 (439)
T ss_pred HHHHHHHHHHHhcCCcEEEeehhhh
Confidence 3344444444 4789999999974
No 228
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.74 E-value=0.00018 Score=51.92 Aligned_cols=80 Identities=16% Similarity=0.174 Sum_probs=51.0
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhccccCc----------------------C------cc-cHHHHHHHhCCCeeEEE
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKITRRFEEF----------------------P------NI-GLNFQSKRLTRKKLLIV 102 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~----------------------~------~~-~~~~~~~~l~~~~~Llv 102 (172)
..+.|.|+.|+||||+++.++..+...-... . .. ..+.++..++..+-.++
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~i~ 105 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDRII 105 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCEEE
Confidence 6899999999999999999887643210000 0 01 34556666777778888
Q ss_pred EecCCCHHhHHHHHhhccCCCCCcE-EEEEeCCh
Q 040354 103 FDDVHHPRQIDCLIECLDWFASASR-IIIISRDK 135 (172)
Q Consensus 103 lDdv~~~~~~~~l~~~~~~~~~~s~-iiiTtr~~ 135 (172)
++++.+.+.+..+. ... .|.. ++.|.+-.
T Consensus 106 igEir~~ea~~~~~-a~~---tGh~g~~~T~Ha~ 135 (186)
T cd01130 106 VGEVRGGEALDLLQ-AMN---TGHPGGMTTIHAN 135 (186)
T ss_pred EEccCcHHHHHHHH-HHh---cCCCCceeeecCC
Confidence 99998777665433 322 3444 45555543
No 229
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.74 E-value=3.4e-05 Score=56.08 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=22.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 040354 53 KLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 53 ~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
+|+|.|++|+||||+|+.+...+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999999865
No 230
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.73 E-value=0.00017 Score=51.40 Aligned_cols=97 Identities=15% Similarity=0.176 Sum_probs=56.9
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhc---c--ccC------------c-----------------Cc--c-----cHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKITR---R--FEE------------F-----------------PN--I-----GLNFQ 90 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~~~---~--f~~------------~-----------------~~--~-----~~~~~ 90 (172)
..++|.|+.|+|||||++.++..... . |+. . ++ + ..-.+
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~qrv~l 106 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGMKQRLAL 106 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHHHHHHHHH
Confidence 58999999999999999998875211 0 000 0 11 1 11233
Q ss_pred HHHhCCCeeEEEEecCC---CHHhHHHHHhhccCC-CCCcEEEEEeCChhHHHhcCCCceEEc
Q 040354 91 SKRLTRKKLLIVFDDVH---HPRQIDCLIECLDWF-ASASRIIIISRDKQALISCGVNKIYQM 149 (172)
Q Consensus 91 ~~~l~~~~~LlvlDdv~---~~~~~~~l~~~~~~~-~~~s~iiiTtr~~~~~~~~~~~~~~~l 149 (172)
...+..++-++++|+.. |......+...+... ..|..+|++|++...+..+ +++++.+
T Consensus 107 aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~-~d~i~~l 168 (173)
T cd03230 107 AQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERL-CDRVAIL 168 (173)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHh-CCEEEEE
Confidence 34455677899999995 333333333333221 1356799999998766543 3444444
No 231
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.73 E-value=0.00013 Score=56.26 Aligned_cols=51 Identities=18% Similarity=0.222 Sum_probs=39.4
Q ss_pred CCCcccccc---chHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 25 NNNHLVGIE---SRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 25 ~~~~~~Gr~---~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
..+.++|.. ..++.+.+++........+.+.|+|.+|.|||++++++....
T Consensus 32 ~~~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~h 85 (302)
T PF05621_consen 32 RADRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLH 85 (302)
T ss_pred hcCCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHC
Confidence 345667654 446677777776665657899999999999999999999873
No 232
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.00034 Score=58.62 Aligned_cols=81 Identities=16% Similarity=0.221 Sum_probs=52.8
Q ss_pred CccccccchHHHH---HHHhcCCC------CCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc--Ccc-------cHH
Q 040354 27 NHLVGIESRTEEI---ESVLGVGS------TMNICKLGISGSGDIGKITIAGAIFNKITRRFEEF--PNI-------GLN 88 (172)
Q Consensus 27 ~~~~Gr~~~~~~l---~~~l~~~~------~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~--~~~-------~~~ 88 (172)
.+.-|.++..+++ +++|.... ..-++-+.++|++|+|||.||++++.+..-.|-.. +++ ...
T Consensus 150 ~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAs 229 (596)
T COG0465 150 ADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGAS 229 (596)
T ss_pred hhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCcH
Confidence 4566877665555 55555332 11256789999999999999999999855443333 221 334
Q ss_pred HH----HHHhCCCeeEEEEecCC
Q 040354 89 FQ----SKRLTRKKLLIVFDDVH 107 (172)
Q Consensus 89 ~~----~~~l~~~~~LlvlDdv~ 107 (172)
.+ .+..++-++++++|.++
T Consensus 230 RVRdLF~qAkk~aP~IIFIDEiD 252 (596)
T COG0465 230 RVRDLFEQAKKNAPCIIFIDEID 252 (596)
T ss_pred HHHHHHHHhhccCCCeEEEehhh
Confidence 44 44445567999999996
No 233
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.73 E-value=0.00046 Score=48.87 Aligned_cols=94 Identities=15% Similarity=0.161 Sum_probs=55.8
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhcc-----ccCc------------------Cc--------c-----cHHHHHHHhC
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKITRR-----FEEF------------------PN--------I-----GLNFQSKRLT 95 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~~~~-----f~~~------------------~~--------~-----~~~~~~~~l~ 95 (172)
.+++|.|+.|+|||||++.+....... +... ++ + ..-.+.+.+.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~laral~ 107 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLAFARLLL 107 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHHHHHHHHH
Confidence 589999999999999999998763211 1100 00 1 1122334444
Q ss_pred CCeeEEEEecCC---CHHhHHHHHhhccCCCCCcEEEEEeCChhHHHhcCCCceEEc
Q 040354 96 RKKLLIVFDDVH---HPRQIDCLIECLDWFASASRIIIISRDKQALISCGVNKIYQM 149 (172)
Q Consensus 96 ~~~~LlvlDdv~---~~~~~~~l~~~~~~~~~~s~iiiTtr~~~~~~~~~~~~~~~l 149 (172)
.++-++++|+.. |......+...+... +..+|++|++...... +++++.+
T Consensus 108 ~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~--~d~i~~l 160 (166)
T cd03223 108 HKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKF--HDRVLDL 160 (166)
T ss_pred cCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhh--CCEEEEE
Confidence 567889999985 333333333333322 3568889988765432 4555544
No 234
>PRK07261 topology modulation protein; Provisional
Probab=97.72 E-value=2.9e-05 Score=55.35 Aligned_cols=55 Identities=22% Similarity=0.226 Sum_probs=35.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhcc---ccCc---Ccc-------cHHHHHHHhCCCeeEEEEecCCCH
Q 040354 53 KLGISGSGDIGKITIAGAIFNKITRR---FEEF---PNI-------GLNFQSKRLTRKKLLIVFDDVHHP 109 (172)
Q Consensus 53 ~i~I~G~~GiGKTtLa~~~~~~~~~~---f~~~---~~~-------~~~~~~~~l~~~~~LlvlDdv~~~ 109 (172)
.+.|+|++|+||||||+.+.....-. .+.. .+. ....+...+.+.+ .|+|+....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~--wIidg~~~~ 69 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNWQERDDDDMIADISNFLLKHD--WIIDGNYSW 69 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccccccCCHHHHHHHHHHHHhCCC--EEEcCcchh
Confidence 58899999999999999988763211 1111 111 3445555666555 577877543
No 235
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.72 E-value=0.00023 Score=53.92 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=21.4
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|+.|+|||||.+.+..-
T Consensus 29 ~i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 29 EITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 69999999999999999999875
No 236
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.71 E-value=0.00068 Score=49.60 Aligned_cols=27 Identities=19% Similarity=0.246 Sum_probs=23.2
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhcc
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKITRR 78 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~~~~ 78 (172)
+.+.++|.||+||||+|++++..++.+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHh
Confidence 578899999999999999999875544
No 237
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.71 E-value=0.00024 Score=52.35 Aligned_cols=23 Identities=22% Similarity=0.182 Sum_probs=20.9
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|+.|+|||||++.++..
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999988764
No 238
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.71 E-value=0.0002 Score=51.73 Aligned_cols=88 Identities=14% Similarity=0.120 Sum_probs=50.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHH-Hhcc---cc-----------Cc-------C-------cc--cHHHHHHHhCC--Cee
Q 040354 53 KLGISGSGDIGKITIAGAIFNK-ITRR---FE-----------EF-------P-------NI--GLNFQSKRLTR--KKL 99 (172)
Q Consensus 53 ~i~I~G~~GiGKTtLa~~~~~~-~~~~---f~-----------~~-------~-------~~--~~~~~~~~l~~--~~~ 99 (172)
++.|+|+.|.||||+++.+.-. +..+ |- .. + .+ ....+...+.. ++-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~ 80 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENS 80 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCe
Confidence 3679999999999999988832 1111 10 00 1 11 22233444444 788
Q ss_pred EEEEecCC---CHHh----HHHHHhhccCCCCCcEEEEEeCChhHHHhc
Q 040354 100 LIVFDDVH---HPRQ----IDCLIECLDWFASASRIIIISRDKQALISC 141 (172)
Q Consensus 100 LlvlDdv~---~~~~----~~~l~~~~~~~~~~s~iiiTtr~~~~~~~~ 141 (172)
++++|+.. +... ...+...+.. ..++.+|++|++..+...+
T Consensus 81 llllDEp~~g~d~~~~~~~~~~~l~~l~~-~~~~~iii~TH~~~l~~~~ 128 (185)
T smart00534 81 LVLLDELGRGTSTYDGVAIAAAVLEYLLE-KIGALTLFATHYHELTKLA 128 (185)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEEecHHHHHHHh
Confidence 99999994 2221 1222222221 1366799999988766543
No 239
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.70 E-value=0.0013 Score=52.95 Aligned_cols=25 Identities=16% Similarity=0.312 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
.++++|+|++|+||||++..++..+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L 265 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQF 265 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHH
Confidence 5799999999999999999998764
No 240
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.70 E-value=0.0002 Score=52.71 Aligned_cols=23 Identities=26% Similarity=0.239 Sum_probs=21.1
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|+.|+|||||++.++..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 27 EFLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998864
No 241
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=97.69 E-value=0.00019 Score=59.04 Aligned_cols=32 Identities=25% Similarity=0.374 Sum_probs=25.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH---HhccccCc
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK---ITRRFEEF 82 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~---~~~~f~~~ 82 (172)
-+..+|+|++|+||||+.+.++.+ +..+++..
T Consensus 101 g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y 135 (614)
T KOG0927|consen 101 GRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFY 135 (614)
T ss_pred CceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchh
Confidence 367899999999999999999887 44444443
No 242
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=0.00011 Score=58.25 Aligned_cols=82 Identities=11% Similarity=0.104 Sum_probs=52.0
Q ss_pred CccccccchHHHHHHHhc----------CCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc--Ccc---------
Q 040354 27 NHLVGIESRTEEIESVLG----------VGSTMNICKLGISGSGDIGKITIAGAIFNKITRRFEEF--PNI--------- 85 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~----------~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~--~~~--------- 85 (172)
+++.|.++..+.|.+... ....+ =+-+.++|++|+|||-||++++.+-...|-.+ ..+
T Consensus 212 ~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrP-WkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKwRGeSE 290 (491)
T KOG0738|consen 212 DDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRP-WKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKWRGESE 290 (491)
T ss_pred HhhcchHHHHHHHHHHHhhhhhhHHHHhhcccc-cceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhhccchH
Confidence 667788877776665332 11122 46789999999999999999999865554433 111
Q ss_pred -cHHHHHHHhCC-CeeEEEEecCCCH
Q 040354 86 -GLNFQSKRLTR-KKLLIVFDDVHHP 109 (172)
Q Consensus 86 -~~~~~~~~l~~-~~~LlvlDdv~~~ 109 (172)
+...+.+..+- -+..|+||+|+..
T Consensus 291 KlvRlLFemARfyAPStIFiDEIDsl 316 (491)
T KOG0738|consen 291 KLVRLLFEMARFYAPSTIFIDEIDSL 316 (491)
T ss_pred HHHHHHHHHHHHhCCceeehhhHHHH
Confidence 22222222222 4678999999744
No 243
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.69 E-value=0.00021 Score=52.43 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=21.0
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|+.|+|||||++.+...
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 29 EALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 69999999999999999988865
No 244
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.69 E-value=9.2e-05 Score=58.91 Aligned_cols=81 Identities=19% Similarity=0.307 Sum_probs=50.8
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhc------cccCc-----------C-cc-cHHHHHHHhCCCeeEEEEecCC--CH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKITR------RFEEF-----------P-NI-GLNFQSKRLTRKKLLIVFDDVH--HP 109 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~~------~f~~~-----------~-~~-~~~~~~~~l~~~~~LlvlDdv~--~~ 109 (172)
++-+.|||..|.|||.|+-.+++.+.. ||-.. . .. ....+...+.++..||+||++. |.
T Consensus 62 ~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~~~~lLcfDEF~V~Di 141 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAKESRLLCFDEFQVTDI 141 (362)
T ss_pred CceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHhcCCEEEEeeeeccch
Confidence 688999999999999999999998332 23222 0 11 2344445555666799999884 44
Q ss_pred Hh---HHHHHhhccCCCCCcEEEEEeCC
Q 040354 110 RQ---IDCLIECLDWFASASRIIIISRD 134 (172)
Q Consensus 110 ~~---~~~l~~~~~~~~~~s~iiiTtr~ 134 (172)
.+ +..++..+- ..|. ++|+|.|
T Consensus 142 aDAmil~rLf~~l~--~~gv-vlVaTSN 166 (362)
T PF03969_consen 142 ADAMILKRLFEALF--KRGV-VLVATSN 166 (362)
T ss_pred hHHHHHHHHHHHHH--HCCC-EEEecCC
Confidence 33 444544442 2555 5555544
No 245
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.69 E-value=0.00037 Score=51.23 Aligned_cols=55 Identities=13% Similarity=0.244 Sum_probs=36.4
Q ss_pred HHHHHHHhCCCeeEEEEecCC---CHHhHHHHHhhccCCC-CCcEEEEEeCChhHHHhc
Q 040354 87 LNFQSKRLTRKKLLIVFDDVH---HPRQIDCLIECLDWFA-SASRIIIISRDKQALISC 141 (172)
Q Consensus 87 ~~~~~~~l~~~~~LlvlDdv~---~~~~~~~l~~~~~~~~-~~s~iiiTtr~~~~~~~~ 141 (172)
.-.+.+.|..++-++.||+.. |.+.....+..+.... .|-..++.|++=..+...
T Consensus 144 RVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~V 202 (240)
T COG1126 144 RVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREV 202 (240)
T ss_pred HHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHh
Confidence 345667777888899999996 3444444444443332 566788888887777664
No 246
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=0.00022 Score=54.18 Aligned_cols=57 Identities=21% Similarity=0.244 Sum_probs=39.9
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhccccCc--Ccc-------cH---HHHHHHhCC-CeeEEEEecCC
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKITRRFEEF--PNI-------GL---NFQSKRLTR-KKLLIVFDDVH 107 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~--~~~-------~~---~~~~~~l~~-~~~LlvlDdv~ 107 (172)
+.-+.+||++|+|||-+|++++|....-|-.+ +.+ .. ..+.+..+. +-++|+||+++
T Consensus 211 pkgvllygppgtgktl~aravanrtdacfirvigselvqkyvgegarmvrelf~martkkaciiffdeid 280 (435)
T KOG0729|consen 211 PKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEID 280 (435)
T ss_pred CCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccc
Confidence 67789999999999999999999855555443 111 22 333333344 45899999985
No 247
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.68 E-value=0.00056 Score=52.61 Aligned_cols=93 Identities=23% Similarity=0.229 Sum_probs=56.7
Q ss_pred ccccccchHHHHH----HHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhc---------------cccCcCcc---
Q 040354 28 HLVGIESRTEEIE----SVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITR---------------RFEEFPNI--- 85 (172)
Q Consensus 28 ~~~Gr~~~~~~l~----~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~---------------~f~~~~~~--- 85 (172)
.++|..-..+.+. ..+.......+-++.++|.+|+||+..++.+++.... +|+....+
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~ie~Y 162 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKIEDY 162 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHHHHHH
Confidence 4566554444444 4444444444788999999999999999999887221 12221111
Q ss_pred ---cHHHHHHHhC-CCeeEEEEecCCCH--HhHHHHHhhcc
Q 040354 86 ---GLNFQSKRLT-RKKLLIVFDDVHHP--RQIDCLIECLD 120 (172)
Q Consensus 86 ---~~~~~~~~l~-~~~~LlvlDdv~~~--~~~~~l~~~~~ 120 (172)
+...++.-+. .++.|+|||+++.. .-++.+.+.+.
T Consensus 163 k~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLd 203 (344)
T KOG2170|consen 163 KEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLD 203 (344)
T ss_pred HHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhc
Confidence 3333333333 36899999999854 34666665554
No 248
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=97.68 E-value=0.0014 Score=51.76 Aligned_cols=52 Identities=25% Similarity=0.277 Sum_probs=39.2
Q ss_pred CCccccccchHH---HHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhcc
Q 040354 26 NNHLVGIESRTE---EIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITRR 78 (172)
Q Consensus 26 ~~~~~Gr~~~~~---~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 78 (172)
.+-+||..+..+ -+.+++.++.-. -+.+.+.|++|+|||+||..+...+...
T Consensus 38 ~dG~VGQ~~AReAaGvIv~mik~gk~a-GrgiLi~GppgTGKTAlA~gIa~eLG~d 92 (450)
T COG1224 38 GDGLVGQEEAREAAGVIVKMIKQGKMA-GRGILIVGPPGTGKTALAMGIARELGED 92 (450)
T ss_pred CCcccchHHHHHhhhHHHHHHHhCccc-ccEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 456888776655 345666655433 5899999999999999999999986643
No 249
>PTZ00301 uridine kinase; Provisional
Probab=97.67 E-value=5e-05 Score=56.00 Aligned_cols=25 Identities=28% Similarity=0.530 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
..+|+|.|++|+||||||+.+...+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 4789999999999999999888765
No 250
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.67 E-value=5.7e-05 Score=61.85 Aligned_cols=45 Identities=16% Similarity=-0.021 Sum_probs=38.4
Q ss_pred CCccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 26 NNHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 26 ~~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
...++||++.++.+...+..+ ..+.|.|++|+|||+||+.+....
T Consensus 19 ~~~i~gre~vI~lll~aalag-----~hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 19 EKGLYERSHAIRLCLLAALSG-----ESVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred hhhccCcHHHHHHHHHHHccC-----CCEEEECCCChhHHHHHHHHHHHh
Confidence 356899999999998877643 478999999999999999999874
No 251
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.67 E-value=0.00033 Score=51.22 Aligned_cols=88 Identities=17% Similarity=0.081 Sum_probs=51.5
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH-Hh---ccccCc------------------Cc----c-----cHHHHHHHh--CCCe
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK-IT---RRFEEF------------------PN----I-----GLNFQSKRL--TRKK 98 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~-~~---~~f~~~------------------~~----~-----~~~~~~~~l--~~~~ 98 (172)
.++.|+|+.|.||||+.+.+... +. ..|-.. ++ + -...+...+ ...+
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~dqi~~~~~~~d~i~~~~s~~~~e~~~l~~i~~~~~~~ 109 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDRIFTRIGAEDSISDGRSTFMAELLELKEILSLATPR 109 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcCEEEEEecCcccccCCceeHHHHHHHHHHHHHhccCC
Confidence 68999999999999999999833 21 111100 11 1 112222222 2468
Q ss_pred eEEEEecCCC---HHh----HHHHHhhccCCCCCcEEEEEeCChhHHHhc
Q 040354 99 LLIVFDDVHH---PRQ----IDCLIECLDWFASASRIIIISRDKQALISC 141 (172)
Q Consensus 99 ~LlvlDdv~~---~~~----~~~l~~~~~~~~~~s~iiiTtr~~~~~~~~ 141 (172)
-++++|+... ... ...+...+. ..++.+|++|++..+...+
T Consensus 110 ~llllDEp~~gld~~~~~~l~~~ll~~l~--~~~~~vi~~tH~~~~~~~~ 157 (202)
T cd03243 110 SLVLIDELGRGTSTAEGLAIAYAVLEHLL--EKGCRTLFATHFHELADLP 157 (202)
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHHHH--hcCCeEEEECChHHHHHHh
Confidence 8999999942 211 122222222 2366799999988776654
No 252
>PRK06762 hypothetical protein; Provisional
Probab=97.66 E-value=4.9e-05 Score=53.67 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
+.++.|+|++|+||||+|+.+...+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998775
No 253
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=97.66 E-value=0.00094 Score=55.79 Aligned_cols=49 Identities=16% Similarity=0.150 Sum_probs=37.4
Q ss_pred CCCccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHH
Q 040354 25 NNNHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 25 ~~~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.-+.++|....+..+.+.+..-... ...+.|+|.+|+||+++|+.++..
T Consensus 202 ~f~~~ig~s~~~~~~~~~~~~~A~~-~~pvlI~GE~GtGK~~lA~aiH~~ 250 (520)
T PRK10820 202 AFSQIVAVSPKMRQVVEQARKLAML-DAPLLITGDTGTGKDLLAYACHLR 250 (520)
T ss_pred cccceeECCHHHHHHHHHHHHHhCC-CCCEEEECCCCccHHHHHHHHHHh
Confidence 3457999998888887766522212 356889999999999999998775
No 254
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=97.65 E-value=0.00074 Score=49.52 Aligned_cols=57 Identities=18% Similarity=0.358 Sum_probs=33.8
Q ss_pred HHhCCCeeEEEEecCC---CHHhHH-HHHhhccCCCC--CcEEEEEeCChhHHHhcCCCceEEcC
Q 040354 92 KRLTRKKLLIVFDDVH---HPRQID-CLIECLDWFAS--ASRIIIISRDKQALISCGVNKIYQMQ 150 (172)
Q Consensus 92 ~~l~~~~~LlvlDdv~---~~~~~~-~l~~~~~~~~~--~s~iiiTtr~~~~~~~~~~~~~~~l~ 150 (172)
..+..++-++++|+.. +..... .+...+..... +..||++|++...... ++.++.+.
T Consensus 134 ~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~--~d~i~~l~ 196 (204)
T cd03240 134 ETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA--ADHIYRVE 196 (204)
T ss_pred HHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhh--CCEEEEEe
Confidence 3445677899999995 333333 34443332222 5569999998876643 44555553
No 255
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.65 E-value=0.00011 Score=51.45 Aligned_cols=27 Identities=22% Similarity=0.242 Sum_probs=23.4
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhc
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKITR 77 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~~ 77 (172)
..+|.|+|.+|+||||||+++...+..
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~ 28 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFA 28 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 478999999999999999999988544
No 256
>PRK08233 hypothetical protein; Provisional
Probab=97.65 E-value=5e-05 Score=54.22 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=22.6
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
..+|+|.|++|+||||||..+....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4789999999999999999998874
No 257
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.65 E-value=0.0004 Score=50.78 Aligned_cols=88 Identities=17% Similarity=0.214 Sum_probs=52.8
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH----hcc--------ccCc---------Ccc---------cHHHHHHHhCC----C
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKI----TRR--------FEEF---------PNI---------GLNFQSKRLTR----K 97 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~----~~~--------f~~~---------~~~---------~~~~~~~~l~~----~ 97 (172)
.++.|+|+.|.|||||++.+...+ ... |... +++ -...+...+.. +
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~~~~ 105 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKAKKGE 105 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhccCCC
Confidence 689999999999999999987652 111 1100 222 01223344432 6
Q ss_pred eeEEEEecCC---CHHhH----HHHHhhccCCCCCcEEEEEeCChhHHHhc
Q 040354 98 KLLIVFDDVH---HPRQI----DCLIECLDWFASASRIIIISRDKQALISC 141 (172)
Q Consensus 98 ~~LlvlDdv~---~~~~~----~~l~~~~~~~~~~s~iiiTtr~~~~~~~~ 141 (172)
+-++++|+.. +.... ..+...+. ..+..+|++|++...+..+
T Consensus 106 p~llllDEp~~glD~~~~~~l~~~ll~~l~--~~~~tiiivTH~~~~~~~~ 154 (199)
T cd03283 106 PVLFLLDEIFKGTNSRERQAASAAVLKFLK--NKNTIGIISTHDLELADLL 154 (199)
T ss_pred CeEEEEecccCCCCHHHHHHHHHHHHHHHH--HCCCEEEEEcCcHHHHHhh
Confidence 7899999973 22222 22222332 2366799999998776554
No 258
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.65 E-value=0.00031 Score=60.44 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=21.1
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
..++|+|.+|+|||||++.+..-
T Consensus 500 e~vaIvG~SGsGKSTL~KLL~gl 522 (709)
T COG2274 500 EKVAIVGRSGSGKSTLLKLLLGL 522 (709)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999998875
No 259
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.65 E-value=0.00061 Score=50.86 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=21.2
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|+.|+|||||++.++..
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~Gl 50 (236)
T cd03253 28 KKVAIVGPSGSGKSTILRLLFRF 50 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 58999999999999999998865
No 260
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.00041 Score=58.92 Aligned_cols=137 Identities=19% Similarity=0.205 Sum_probs=79.3
Q ss_pred ccccccchHHHHHHHhcCCCC----------CCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc--Cc-----c-----
Q 040354 28 HLVGIESRTEEIESVLGVGST----------MNICKLGISGSGDIGKITIAGAIFNKITRRFEEF--PN-----I----- 85 (172)
Q Consensus 28 ~~~Gr~~~~~~l~~~l~~~~~----------~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~--~~-----~----- 85 (172)
++=|..+..+.+.+.+..... ....-|.++|++|.|||.||.+++....-+|-.+ .. +
T Consensus 668 digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq 747 (952)
T KOG0735|consen 668 DIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQ 747 (952)
T ss_pred ecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHH
Confidence 344555556666665543221 1135689999999999999999988755455443 11 1
Q ss_pred -cHHHHHHHhCCCeeEEEEecCCCH-------------HhHHHHHhhccCCC--CCcEEEE-EeCChhHHHhc----CCC
Q 040354 86 -GLNFQSKRLTRKKLLIVFDDVHHP-------------RQIDCLIECLDWFA--SASRIII-ISRDKQALISC----GVN 144 (172)
Q Consensus 86 -~~~~~~~~l~~~~~LlvlDdv~~~-------------~~~~~l~~~~~~~~--~~s~iii-Ttr~~~~~~~~----~~~ 144 (172)
..+.+.+.-..++|+|.||+.++. .-.++++..++-.. .|-.|+- |||..-+-..+ ..+
T Consensus 748 ~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD 827 (952)
T KOG0735|consen 748 NVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLD 827 (952)
T ss_pred HHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccc
Confidence 233333333458999999999743 12566665554221 4555654 55543222221 234
Q ss_pred ceEEcCCCCHHHHHHHHhhh
Q 040354 145 KIYQMQELVHADALKLFSEC 164 (172)
Q Consensus 145 ~~~~l~~l~~~~~~~lf~~~ 164 (172)
+.+....-+..+-.++|...
T Consensus 828 ~~v~C~~P~~~eRl~il~~l 847 (952)
T KOG0735|consen 828 KLVYCPLPDEPERLEILQVL 847 (952)
T ss_pred eeeeCCCCCcHHHHHHHHHH
Confidence 45566666777777766543
No 261
>PRK04132 replication factor C small subunit; Provisional
Probab=97.64 E-value=0.0007 Score=59.20 Aligned_cols=108 Identities=17% Similarity=0.212 Sum_probs=68.8
Q ss_pred EEc--CCCchHHHHHHHHHHHH-hccccCc------Cc-ccHHHHH----HHhC-----C-CeeEEEEecCCCH--HhHH
Q 040354 56 ISG--SGDIGKITIAGAIFNKI-TRRFEEF------PN-IGLNFQS----KRLT-----R-KKLLIVFDDVHHP--RQID 113 (172)
Q Consensus 56 I~G--~~GiGKTtLa~~~~~~~-~~~f~~~------~~-~~~~~~~----~~l~-----~-~~~LlvlDdv~~~--~~~~ 113 (172)
+.| |.++||||+|..+++++ .+.+... .+ ...+.++ .... + +.-++|+|+++.. +..+
T Consensus 569 ~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt~~AQn 648 (846)
T PRK04132 569 IGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQ 648 (846)
T ss_pred hcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCCHHHHH
Confidence 347 78999999999999985 3222111 22 1222333 2221 1 2369999999854 5688
Q ss_pred HHHhhccCCCCCcEEEEEeCChh-HHHhc-CCCceEEcCCCCHHHHHHHHhh
Q 040354 114 CLIECLDWFASASRIIIISRDKQ-ALISC-GVNKIYQMQELVHADALKLFSE 163 (172)
Q Consensus 114 ~l~~~~~~~~~~s~iiiTtr~~~-~~~~~-~~~~~~~l~~l~~~~~~~lf~~ 163 (172)
.|+..+......+++|+++.+.. +...+ .....+++.+++.++....+.+
T Consensus 649 ALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~ 700 (846)
T PRK04132 649 ALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRY 700 (846)
T ss_pred HHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHH
Confidence 88888876566777777665543 33332 3456899999998887766654
No 262
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.64 E-value=0.00068 Score=50.51 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=21.0
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|+.|+|||||++.++..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (234)
T cd03251 29 ETVALVGPSGSGKSTLVNLIPRF 51 (234)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 58999999999999999988765
No 263
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.64 E-value=0.00062 Score=54.81 Aligned_cols=40 Identities=15% Similarity=0.249 Sum_probs=32.7
Q ss_pred ccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHH-HHHHHH
Q 040354 32 IESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIA-GAIFNK 74 (172)
Q Consensus 32 r~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa-~~~~~~ 74 (172)
|.+..++|..||....+ ..|.|.||.|+||+.|+ .++...
T Consensus 1 R~e~~~~L~~wL~e~~~---TFIvV~GPrGSGK~elV~d~~L~~ 41 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPN---TFIVVQGPRGSGKRELVMDHVLKD 41 (431)
T ss_pred CchHHHHHHHHHhcCCC---eEEEEECCCCCCccHHHHHHHHhC
Confidence 56778999999997653 59999999999999998 555543
No 264
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.63 E-value=0.00037 Score=51.14 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=20.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 040354 53 KLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 53 ~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
+++|.|+.|+|||||++.++..
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 8999999999999999998854
No 265
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.63 E-value=0.0003 Score=51.34 Aligned_cols=26 Identities=15% Similarity=0.300 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
+.++.++|+.|+||||.+-+++....
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~ 26 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLK 26 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHh
Confidence 36899999999999999888887743
No 266
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.63 E-value=5.7e-05 Score=45.60 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 040354 53 KLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 53 ~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
++.|.|.+|+||||+++.+....
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998865
No 267
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=97.62 E-value=0.00046 Score=53.64 Aligned_cols=23 Identities=26% Similarity=0.250 Sum_probs=21.1
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|+.|.|||||++.++..
T Consensus 29 ei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 29 RIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998865
No 268
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.62 E-value=0.00045 Score=53.89 Aligned_cols=85 Identities=14% Similarity=0.166 Sum_probs=56.4
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhccccCc---------------------C------cc-cHHHHHHHhCCCeeEEE
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKITRRFEEF---------------------P------NI-GLNFQSKRLTRKKLLIV 102 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~---------------------~------~~-~~~~~~~~l~~~~~Llv 102 (172)
...+.|.|+.|+|||||++.++..+....... . .. ..+.+...++..+-.++
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd~ii 223 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPDRII 223 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCCeEE
Confidence 36999999999999999999887632211100 0 12 45667777888888899
Q ss_pred EecCCCHHhHHHHHhhccCCCCCc-EEEEEeCChhHHH
Q 040354 103 FDDVHHPRQIDCLIECLDWFASAS-RIIIISRDKQALI 139 (172)
Q Consensus 103 lDdv~~~~~~~~l~~~~~~~~~~s-~iiiTtr~~~~~~ 139 (172)
+|++-..+.+.. ..... .|. -++.|++..+...
T Consensus 224 ~gE~r~~e~~~~-l~a~~---~g~~~~i~T~Ha~~~~~ 257 (308)
T TIGR02788 224 LGELRGDEAFDF-IRAVN---TGHPGSITTLHAGSPEE 257 (308)
T ss_pred EeccCCHHHHHH-HHHHh---cCCCeEEEEEeCCCHHH
Confidence 999988766654 33333 232 2577887765443
No 269
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.61 E-value=0.00078 Score=49.75 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=21.0
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|+.|+|||||++.++..
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 31 EKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 58999999999999999998764
No 270
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=97.61 E-value=0.00031 Score=60.57 Aligned_cols=47 Identities=21% Similarity=0.184 Sum_probs=37.7
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHH
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
..++|+...+..+.+.+..-... ...|.|+|++|+|||++|+.++..
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~-~~pVLI~GE~GTGK~~lA~~ih~~ 422 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQS-DSTVLILGETGTGKELIARAIHNL 422 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCC-CCCEEEECCCCcCHHHHHHHHHHh
Confidence 46899998888887766532222 368999999999999999999986
No 271
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=8.8e-05 Score=57.22 Aligned_cols=57 Identities=18% Similarity=0.203 Sum_probs=43.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhccccCc-------Ccc--cHHHHHHHhC----CCeeEEEEecCC
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKITRRFEEF-------PNI--GLNFQSKRLT----RKKLLIVFDDVH 107 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~-------~~~--~~~~~~~~l~----~~~~LlvlDdv~ 107 (172)
+..++|||++|.|||-+|+.++..+.-+|-.. ..+ ....+++.+. ..++.|.+|+++
T Consensus 166 Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRemf~yA~~~~pciifmdeiD 235 (388)
T KOG0651|consen 166 PKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDMFRYAREVIPCIIFMDEID 235 (388)
T ss_pred CceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHHHHHHHHhhhCceEEeehhhh
Confidence 67899999999999999999999987776554 111 3444454443 357999999996
No 272
>PRK03839 putative kinase; Provisional
Probab=97.61 E-value=6.3e-05 Score=53.91 Aligned_cols=24 Identities=25% Similarity=0.505 Sum_probs=21.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 040354 53 KLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 53 ~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
.|.|.|++|+||||+++.+++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998753
No 273
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.61 E-value=0.0001 Score=59.01 Aligned_cols=31 Identities=26% Similarity=0.114 Sum_probs=25.7
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhcc-ccCc
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKITRR-FEEF 82 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~~~~-f~~~ 82 (172)
..+.|+|++|+|||||++.+++.+..+ |+..
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~ 200 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITRNHPEVE 200 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhcccCCceE
Confidence 578999999999999999999985544 5443
No 274
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=9e-05 Score=59.62 Aligned_cols=112 Identities=18% Similarity=0.246 Sum_probs=67.0
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhccccCc----Ccc-cHHHHHHHhCC--CeeEEEEecCCCH--------H-----
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKITRRFEEF----PNI-GLNFQSKRLTR--KKLLIVFDDVHHP--------R----- 110 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~----~~~-~~~~~~~~l~~--~~~LlvlDdv~~~--------~----- 110 (172)
.|-..++||||+|||+++.++++.+. |+.+ ... .-..+++.|.. .+.+||++|||.. .
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L~--ydIydLeLt~v~~n~dLr~LL~~t~~kSIivIEDIDcs~~l~~~~~~~~~~~ 312 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYLN--YDIYDLELTEVKLDSDLRHLLLATPNKSILLIEDIDCSFDLRERRKKKKENF 312 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhcC--CceEEeeeccccCcHHHHHHHHhCCCCcEEEEeecccccccccccccccccc
Confidence 36689999999999999999999753 3333 122 34447777754 6789999999632 0
Q ss_pred -------hHHHHHhhcc--CCCC-CcEEEE-EeCChhHH-Hh-cCC---CceEEcCCCCHHHHHHHHhhh
Q 040354 111 -------QIDCLIECLD--WFAS-ASRIII-ISRDKQAL-IS-CGV---NKIYQMQELVHADALKLFSEC 164 (172)
Q Consensus 111 -------~~~~l~~~~~--~~~~-~s~iii-Ttr~~~~~-~~-~~~---~~~~~l~~l~~~~~~~lf~~~ 164 (172)
.+.-|++.+. |.+. +-|||| ||....-+ .. +.+ +.-+.|.-=+.+....|+.++
T Consensus 313 ~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nY 382 (457)
T KOG0743|consen 313 EGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNY 382 (457)
T ss_pred cCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHh
Confidence 1333554543 3333 236654 66543322 11 111 223567777777777766655
No 275
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.61 E-value=0.0003 Score=56.91 Aligned_cols=88 Identities=17% Similarity=0.387 Sum_probs=57.8
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHh-------cc-------ccCc----------------------------------
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKIT-------RR-------FEEF---------------------------------- 82 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~-------~~-------f~~~---------------------------------- 82 (172)
...|.|+|+.|+|||||...+...+. .+ |+..
T Consensus 613 dSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fG 692 (807)
T KOG0066|consen 613 DSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFG 692 (807)
T ss_pred cceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhh
Confidence 46899999999999999998886521 11 3322
Q ss_pred ----------Ccc-----cHHHHHHHhCCCeeEEEEecCC---CHHhHHHHHhhccCCCCCcEEEEEeCChhHHHh
Q 040354 83 ----------PNI-----GLNFQSKRLTRKKLLIVFDDVH---HPRQIDCLIECLDWFASASRIIIISRDKQALIS 140 (172)
Q Consensus 83 ----------~~~-----~~~~~~~~l~~~~~LlvlDdv~---~~~~~~~l~~~~~~~~~~s~iiiTtr~~~~~~~ 140 (172)
.++ ..-.+.+...+.+-+||||+-. +.++++.+...+..+. |. ||+.|++..+...
T Consensus 693 L~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney~-Gg-Vi~VsHDeRLi~e 766 (807)
T KOG0066|consen 693 LASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYN-GG-VIMVSHDERLIVE 766 (807)
T ss_pred hhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhcc-Cc-EEEEecccceeee
Confidence 122 2334455555677789999885 4566777776665443 33 7777887765544
No 276
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=97.60 E-value=0.00075 Score=50.46 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=21.3
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|+.|+|||||++.++..
T Consensus 30 e~~~l~G~nGsGKSTLl~~i~G~ 52 (238)
T cd03249 30 KTVALVGSSGCGKSTVVSLLERF 52 (238)
T ss_pred CEEEEEeCCCCCHHHHHHHHhcc
Confidence 69999999999999999998865
No 277
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=97.60 E-value=0.00039 Score=58.82 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=21.1
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
..++|+|++|+|||||++.+...
T Consensus 362 ~~v~IvG~sGsGKSTLl~lL~gl 384 (588)
T PRK13657 362 QTVAIVGPTGAGKSTLINLLQRV 384 (588)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999998865
No 278
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=97.60 E-value=0.00036 Score=50.48 Aligned_cols=85 Identities=19% Similarity=0.223 Sum_probs=53.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH-Hhcc-------ccCc----------------------C-------c----c----
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK-ITRR-------FEEF----------------------P-------N----I---- 85 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~-~~~~-------f~~~----------------------~-------~----~---- 85 (172)
...+.|+|..|-||||.|..+.-. .... |-.. . + .
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~~ 101 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAAR 101 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHHH
Confidence 479999999999999999776655 2221 1111 0 0 0
Q ss_pred -cHHHHHHHhCCCe-eEEEEecCC-----CHHhHHHHHhhccCCCCCcEEEEEeCCh
Q 040354 86 -GLNFQSKRLTRKK-LLIVFDDVH-----HPRQIDCLIECLDWFASASRIIIISRDK 135 (172)
Q Consensus 86 -~~~~~~~~l~~~~-~LlvlDdv~-----~~~~~~~l~~~~~~~~~~s~iiiTtr~~ 135 (172)
.....++.+.+.. -++|||++. ..-..+.+...+.....+.-||+|.|+.
T Consensus 102 ~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 102 EGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 2334445555544 499999994 2223445555554444677899999975
No 279
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.59 E-value=0.00063 Score=50.27 Aligned_cols=90 Identities=18% Similarity=0.211 Sum_probs=52.0
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH--Hh--cccc-----------Cc-------Ccc------c---HHHHHHH--hCCCe
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK--IT--RRFE-----------EF-------PNI------G---LNFQSKR--LTRKK 98 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~--~~--~~f~-----------~~-------~~~------~---~~~~~~~--l~~~~ 98 (172)
+.+.|+|+.|+||||+.+.+... +. ..|- .. +++ . ...+... +...+
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l~~~~~~ 109 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKALRLATRR 109 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeCCccChhhccchHHHHHHHHHHHHHhCCCC
Confidence 78999999999999999988742 11 1111 10 111 1 1222222 23578
Q ss_pred eEEEEecCCC---HHh----HHHHHhhccCC-CCCcEEEEEeCChhHHHhc
Q 040354 99 LLIVFDDVHH---PRQ----IDCLIECLDWF-ASASRIIIISRDKQALISC 141 (172)
Q Consensus 99 ~LlvlDdv~~---~~~----~~~l~~~~~~~-~~~s~iiiTtr~~~~~~~~ 141 (172)
.|+++|+... ..+ ...+...+... ..+..+|++|++..++...
T Consensus 110 slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 110 SLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred cEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 9999999952 221 12233333322 1234799999998877654
No 280
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=97.59 E-value=0.00074 Score=50.47 Aligned_cols=23 Identities=30% Similarity=0.318 Sum_probs=21.0
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|+.|+|||||++.++..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (237)
T cd03252 29 EVVGIVGRSGSGKSTLTKLIQRF 51 (237)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 59999999999999999998864
No 281
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=97.59 E-value=0.00013 Score=57.37 Aligned_cols=53 Identities=17% Similarity=0.177 Sum_probs=43.0
Q ss_pred CCCccccccchHHHHHHHhc---CCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhc
Q 040354 25 NNNHLVGIESRTEEIESVLG---VGSTMNICKLGISGSGDIGKITIAGAIFNKITR 77 (172)
Q Consensus 25 ~~~~~~Gr~~~~~~l~~~l~---~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~ 77 (172)
..+.|+|.++.++++++.+. ...+..-+++.+.||.|.|||||++.+.+-+..
T Consensus 59 f~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~ 114 (358)
T PF08298_consen 59 FEDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEE 114 (358)
T ss_pred ccccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhhe
Confidence 34589999999999999887 222333689999999999999999998876544
No 282
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.58 E-value=0.00085 Score=49.84 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=21.0
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|+.|+|||||++.+...
T Consensus 30 ~~~~i~G~nGsGKSTLl~~l~G~ 52 (229)
T cd03254 30 ETVAIVGPTGAGKTTLINLLMRF 52 (229)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999998865
No 283
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.58 E-value=7.6e-05 Score=54.79 Aligned_cols=25 Identities=32% Similarity=0.622 Sum_probs=23.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
..+|+|.|++|+|||||++.+...+
T Consensus 6 ~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 6 PIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 5799999999999999999999875
No 284
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=97.58 E-value=0.00042 Score=58.50 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=21.7
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
..++|+|+.|+|||||++.+...+
T Consensus 370 ~~~aIvG~sGsGKSTLl~ll~gl~ 393 (582)
T PRK11176 370 KTVALVGRSGSGKSTIANLLTRFY 393 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc
Confidence 579999999999999999998763
No 285
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=97.57 E-value=0.00023 Score=49.54 Aligned_cols=85 Identities=18% Similarity=0.151 Sum_probs=45.8
Q ss_pred EEcCCCchHHHHHHHHHHHHhc-cccCc----------------------------CcccHHHHHHHhCC--CeeEEEEe
Q 040354 56 ISGSGDIGKITIAGAIFNKITR-RFEEF----------------------------PNIGLNFQSKRLTR--KKLLIVFD 104 (172)
Q Consensus 56 I~G~~GiGKTtLa~~~~~~~~~-~f~~~----------------------------~~~~~~~~~~~l~~--~~~LlvlD 104 (172)
|.|+||+||||+|+.++.++.- +++.. +++....+...+.. ...-+|||
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~~~~~~g~ild 80 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDSELGKQIQEYLDNGELVPDELVIELLKERLEQPPCNRGFILD 80 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTSHHHHHHHHHHHTTSS--HHHHHHHHHHHHHSGGTTTEEEEE
T ss_pred CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhhHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccceeeee
Confidence 6899999999999999987421 11111 11134444444433 24567899
Q ss_pred cCC-CHHhHHHHHhhcc--CCCCCcEEEEEeCChhHHHh
Q 040354 105 DVH-HPRQIDCLIECLD--WFASASRIIIISRDKQALIS 140 (172)
Q Consensus 105 dv~-~~~~~~~l~~~~~--~~~~~s~iiiTtr~~~~~~~ 140 (172)
+.- +..+...+...+. ...+...|.+...+..+...
T Consensus 81 GfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R 119 (151)
T PF00406_consen 81 GFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIER 119 (151)
T ss_dssp SB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHH
T ss_pred eccccHHHHHHHHHHHhhcccchheeeccccchhhhhhh
Confidence 994 5666666554221 11233334455555444444
No 286
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=97.57 E-value=0.00051 Score=59.26 Aligned_cols=23 Identities=26% Similarity=0.260 Sum_probs=20.9
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
..++|+|+.|+|||||++.+...
T Consensus 492 ~~iaIvG~sGsGKSTLlklL~gl 514 (694)
T TIGR03375 492 EKVAIIGRIGSGKSTLLKLLLGL 514 (694)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999988765
No 287
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.57 E-value=0.00021 Score=54.62 Aligned_cols=31 Identities=23% Similarity=0.512 Sum_probs=26.3
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhccccCc
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKITRRFEEF 82 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~ 82 (172)
..++|.|.+|+|||||+..+++.+..+|...
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~~i~~~~~~~ 100 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELINNIAKAHGGY 100 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHHHHHhcCCCE
Confidence 5889999999999999999999877555443
No 288
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.57 E-value=0.00028 Score=54.02 Aligned_cols=61 Identities=16% Similarity=0.143 Sum_probs=33.0
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhcc-ccCc-----------C---cc---------cHHHHHHHhCCCeeEEEEecCC
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKITRR-FEEF-----------P---NI---------GLNFQSKRLTRKKLLIVFDDVH 107 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~~~~-f~~~-----------~---~~---------~~~~~~~~l~~~~~LlvlDdv~ 107 (172)
+.|.|+|.||+||||+|+.+....... .... + +. +...+.+.+. +..++|+||..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls-~~~iVI~Dd~n 80 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALS-KDTIVILDDNN 80 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHT-T-SEEEE-S--
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhc-cCeEEEEeCCc
Confidence 578999999999999999999874331 1111 0 11 2333444443 45888999997
Q ss_pred CHHhHH
Q 040354 108 HPRQID 113 (172)
Q Consensus 108 ~~~~~~ 113 (172)
-...+.
T Consensus 81 YiKg~R 86 (270)
T PF08433_consen 81 YIKGMR 86 (270)
T ss_dssp -SHHHH
T ss_pred hHHHHH
Confidence 655543
No 289
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.57 E-value=0.00051 Score=50.22 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=21.0
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|+.|+|||||++.++..
T Consensus 28 e~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 28 ELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 59999999999999999998864
No 290
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.0005 Score=55.15 Aligned_cols=112 Identities=15% Similarity=0.188 Sum_probs=62.8
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhccccCc--Ccc------cHHHHHHHhC-----CCeeEEEEecCCCH--------
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKITRRFEEF--PNI------GLNFQSKRLT-----RKKLLIVFDDVHHP-------- 109 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~--~~~------~~~~~~~~l~-----~~~~LlvlDdv~~~-------- 109 (172)
.+.+..|||||.|||-.|+.++.+-.-.|-.- .|+ ....+.+.+. .+..||++|+.+-.
T Consensus 384 fRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnkty 463 (630)
T KOG0742|consen 384 FRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTY 463 (630)
T ss_pred hhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccchHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhh
Confidence 68899999999999999999988632222211 333 3344444442 24578889988621
Q ss_pred ---HhHHHHHhhccCCCCCcE----EEEEeCChhHHHhc--CCCceEEcCCCCHHHHHHHHh
Q 040354 110 ---RQIDCLIECLDWFASASR----IIIISRDKQALISC--GVNKIYQMQELVHADALKLFS 162 (172)
Q Consensus 110 ---~~~~~l~~~~~~~~~~s~----iiiTtr~~~~~~~~--~~~~~~~l~~l~~~~~~~lf~ 162 (172)
.+-..|...+-+.+..|+ ++.|.|..++-... ..+++++.+--..+|-..|+.
T Consensus 464 mSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpgdlDsAV~DRide~veFpLPGeEERfkll~ 525 (630)
T KOG0742|consen 464 MSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAVNDRIDEVVEFPLPGEEERFKLLN 525 (630)
T ss_pred hcHHHHHHHHHHHHHhcccccceEEEeccCCccchhHHHHhhhhheeecCCCChHHHHHHHH
Confidence 222233333333343443 33455655443332 245566666566666555543
No 291
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=97.57 E-value=0.00021 Score=57.72 Aligned_cols=57 Identities=12% Similarity=0.178 Sum_probs=39.8
Q ss_pred CCCCccccccchHHHHHHHhc-------C---CCCC-----CeeEEEEEcCCCchHHHHHHHHHHHHhcccc
Q 040354 24 ENNNHLVGIESRTEEIESVLG-------V---GSTM-----NICKLGISGSGDIGKITIAGAIFNKITRRFE 80 (172)
Q Consensus 24 ~~~~~~~Gr~~~~~~l~~~l~-------~---~~~~-----~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~ 80 (172)
.....++|.+...+.+...+. . .... ....+.++|++|+|||++|+.++..+...|.
T Consensus 74 ~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~ 145 (413)
T TIGR00382 74 HLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFA 145 (413)
T ss_pred HhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeE
Confidence 345678999988887765441 1 1100 0257999999999999999999987654443
No 292
>PRK14974 cell division protein FtsY; Provisional
Probab=97.56 E-value=0.0032 Score=49.71 Aligned_cols=26 Identities=15% Similarity=0.143 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
+.++.++|++|+||||++..++..+.
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~ 165 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLK 165 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 57999999999999998888877643
No 293
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.56 E-value=7.7e-05 Score=53.53 Aligned_cols=24 Identities=29% Similarity=0.165 Sum_probs=21.8
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++.|.|++|+||||+|+.+...
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~ 26 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEK 26 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999999998855
No 294
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=97.56 E-value=0.00063 Score=49.64 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=21.2
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|+.|+|||||++.+...
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 27 EVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 69999999999999999988875
No 295
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.56 E-value=0.00054 Score=50.49 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=21.0
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|+.|+|||||++.++..
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 32 EVTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998865
No 296
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=97.56 E-value=0.00045 Score=53.68 Aligned_cols=23 Identities=22% Similarity=0.250 Sum_probs=21.1
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|+.|+|||||++.++.-
T Consensus 20 e~~~l~G~NGaGKSTLl~~l~Gl 42 (302)
T TIGR01188 20 EVFGFLGPNGAGKTTTIRMLTTL 42 (302)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998864
No 297
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=97.56 E-value=6.2e-05 Score=50.92 Aligned_cols=29 Identities=24% Similarity=0.410 Sum_probs=20.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhccccCc
Q 040354 54 LGISGSGDIGKITIAGAIFNKITRRFEEF 82 (172)
Q Consensus 54 i~I~G~~GiGKTtLa~~~~~~~~~~f~~~ 82 (172)
+.|+|.+|+|||++|+.++..+...|...
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RI 30 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRI 30 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEE
Confidence 57999999999999999999977777644
No 298
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.55 E-value=0.00013 Score=49.78 Aligned_cols=41 Identities=10% Similarity=0.155 Sum_probs=29.5
Q ss_pred chHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 34 SRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 34 ~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
++...+.+.|...-.. ..++.+.|..|+||||+++.++..+
T Consensus 6 ~~t~~l~~~l~~~l~~-~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 6 KAMDKFGKAFAKPLDF-GTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHHhCCC-CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3444555555432222 3699999999999999999999874
No 299
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=97.54 E-value=0.0012 Score=48.34 Aligned_cols=23 Identities=39% Similarity=0.501 Sum_probs=20.9
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|+.|+|||||++.+...
T Consensus 35 ~~~~i~G~nGsGKSTLl~~l~Gl 57 (207)
T cd03369 35 EKIGIVGRTGAGKSTLILALFRF 57 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 58999999999999999998764
No 300
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=97.54 E-value=0.00035 Score=58.16 Aligned_cols=49 Identities=18% Similarity=0.274 Sum_probs=40.6
Q ss_pred CCCccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHH
Q 040354 25 NNNHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 25 ~~~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
....++|+...++.+.+.+..-... ...|.|+|.+|+||+++|+.++..
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~-~~pVlI~Ge~GtGK~~~A~~ih~~ 233 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAAS-DLNVLILGETGVGKELVARAIHAA 233 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCC-CCcEEEECCCCccHHHHHHHHHHh
Confidence 3567999999999888877743333 478999999999999999999987
No 301
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=97.53 E-value=0.00057 Score=50.27 Aligned_cols=23 Identities=26% Similarity=0.242 Sum_probs=21.4
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|+.|+|||||++.++..
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~ 47 (213)
T TIGR01277 25 EIVAIMGPSGAGKSTLLNLIAGF 47 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 69999999999999999999875
No 302
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.00012 Score=55.18 Aligned_cols=58 Identities=19% Similarity=0.237 Sum_probs=40.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhccccCc--C-----cc--cHHHHHHH----hCCCeeEEEEecCCC
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKITRRFEEF--P-----NI--GLNFQSKR----LTRKKLLIVFDDVHH 108 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~--~-----~~--~~~~~~~~----l~~~~~LlvlDdv~~ 108 (172)
++-+.++|++|.|||.||++++++....|-.+ + .+ ....++.. -.+-+.+|++|+++.
T Consensus 189 prgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrlakenapsiifideida 259 (408)
T KOG0727|consen 189 PRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDA 259 (408)
T ss_pred CcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHHhccCCcEEEeehhhh
Confidence 68899999999999999999999866666543 0 01 22222222 224578999999963
No 303
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.53 E-value=0.00048 Score=51.39 Aligned_cols=23 Identities=22% Similarity=0.170 Sum_probs=21.5
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|+.|+|||||++.++..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~g~ 49 (232)
T cd03300 27 EFFTLLGPSGCGKTTLLRLIAGF 49 (232)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 69999999999999999999876
No 304
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=97.53 E-value=0.00058 Score=57.46 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=21.0
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
..++|+|+.|+|||||++.+...
T Consensus 359 ~~v~IvG~sGsGKSTLl~lL~gl 381 (571)
T TIGR02203 359 ETVALVGRSGSGKSTLVNLIPRF 381 (571)
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 68999999999999999988765
No 305
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.53 E-value=0.0032 Score=51.03 Aligned_cols=24 Identities=21% Similarity=0.093 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
..++.++|++|+||||++..++..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998865
No 306
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.53 E-value=0.00066 Score=57.40 Aligned_cols=24 Identities=17% Similarity=0.444 Sum_probs=21.6
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
..++|+|+.|+|||||++.+...+
T Consensus 377 ~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 377 QRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 689999999999999999987754
No 307
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.53 E-value=0.0011 Score=48.66 Aligned_cols=90 Identities=18% Similarity=0.148 Sum_probs=53.0
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH-Hh---ccc-cCc-----------------Ccc---------cHHHHHHHh--CCC
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK-IT---RRF-EEF-----------------PNI---------GLNFQSKRL--TRK 97 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~-~~---~~f-~~~-----------------~~~---------~~~~~~~~l--~~~ 97 (172)
..++.|.|+.|.||||+++.+..- +. ..| +.. ++. ....+...+ ..+
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vpa~~~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il~~~~~ 108 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEYATLPIFNRLLSRLSNDDSMERNLSTFASEMSETAYILDYADG 108 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcchhhcCccChhheeEecCCccccchhhhHHHHHHHHHHHHHHhcCC
Confidence 378999999999999999887643 11 111 000 111 111222222 246
Q ss_pred eeEEEEecCC---CHHh----HHHHHhhccCCCCCcEEEEEeCChhHHHhcC
Q 040354 98 KLLIVFDDVH---HPRQ----IDCLIECLDWFASASRIIIISRDKQALISCG 142 (172)
Q Consensus 98 ~~LlvlDdv~---~~~~----~~~l~~~~~~~~~~s~iiiTtr~~~~~~~~~ 142 (172)
+-|+++|+.. +..+ ...+...+.. .++.+|++|++..++..+.
T Consensus 109 ~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 109 DSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILG 158 (204)
T ss_pred CcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhh
Confidence 7899999983 2322 1223333332 3778999999988776653
No 308
>PRK06547 hypothetical protein; Provisional
Probab=97.53 E-value=0.00019 Score=51.29 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=22.8
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
..+|.|.|++|+||||+|+.+....
T Consensus 15 ~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 15 MITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999999999998863
No 309
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=97.52 E-value=0.00051 Score=50.89 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=21.1
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|+.|+|||||++.+...
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~ 49 (223)
T TIGR03740 27 SVYGLLGPNGAGKSTLLKMITGI 49 (223)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 59999999999999999998864
No 310
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=97.52 E-value=0.00063 Score=50.55 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=21.0
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|+.|+|||||++.++..
T Consensus 49 e~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 49 ERIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999988864
No 311
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.52 E-value=0.0001 Score=54.11 Aligned_cols=26 Identities=31% Similarity=0.524 Sum_probs=23.1
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
..+++|.|++|+|||||++.+.....
T Consensus 6 g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 6 GIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 57999999999999999999987643
No 312
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=97.52 E-value=0.0015 Score=52.05 Aligned_cols=81 Identities=16% Similarity=0.166 Sum_probs=52.9
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhccccC---c---------------------------Ccc--cHHHHHHHhCCCe
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKITRRFEE---F---------------------------PNI--GLNFQSKRLTRKK 98 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~---~---------------------------~~~--~~~~~~~~l~~~~ 98 (172)
...+.|+|+.|+||||++..+++.+...... . .+. ....++..++..+
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR~~P 213 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRNALRRKP 213 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHHHhccCC
Confidence 4799999999999999999998875321110 0 001 3456667777888
Q ss_pred eEEEEecCCCHHhHHHHHhhccCCCCCcEEEEEeCC
Q 040354 99 LLIVFDDVHHPRQIDCLIECLDWFASASRIIIISRD 134 (172)
Q Consensus 99 ~LlvlDdv~~~~~~~~l~~~~~~~~~~s~iiiTtr~ 134 (172)
-.+++.++-+.+.......... .|-.++-|-+-
T Consensus 214 d~i~vGEiRd~et~~~al~aa~---tGh~v~tTlHa 246 (358)
T TIGR02524 214 HAILVGEARDAETISAALEAAL---TGHPVYTTLHS 246 (358)
T ss_pred CEEeeeeeCCHHHHHHHHHHHH---cCCcEEEeecc
Confidence 8999999988777654443332 33334444443
No 313
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=97.52 E-value=0.00056 Score=56.03 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=21.0
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
..++|.|++|+||||||+.+..-
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG~ 385 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVGI 385 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHcc
Confidence 58999999999999999998865
No 314
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.52 E-value=9.9e-05 Score=52.20 Aligned_cols=26 Identities=19% Similarity=0.153 Sum_probs=23.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
...+.|+|++|+||||+|+.+...+.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998753
No 315
>PHA02774 E1; Provisional
Probab=97.52 E-value=0.00039 Score=58.09 Aligned_cols=69 Identities=20% Similarity=0.217 Sum_probs=40.3
Q ss_pred HHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCcCcccHHHHHHHhCCCeeEEEEecCC
Q 040354 36 TEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITRRFEEFPNIGLNFQSKRLTRKKLLIVFDDVH 107 (172)
Q Consensus 36 ~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~LlvlDdv~ 107 (172)
+..+..|+..... ...+.|+|++|+|||.+|..+++.+....-..-|......-+.+.+.+ ++|+||+.
T Consensus 421 l~~lk~~l~~~PK--knciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s~FwLqpl~d~k-i~vlDD~t 489 (613)
T PHA02774 421 LTALKDFLKGIPK--KNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKSHFWLQPLADAK-IALLDDAT 489 (613)
T ss_pred HHHHHHHHhcCCc--ccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECccccccchhccCC-EEEEecCc
Confidence 3455555543221 368999999999999999999988543211000001111122233343 78999993
No 316
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.51 E-value=0.00011 Score=52.58 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=22.0
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
+++.+.|++|+||||+|+.+....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 689999999999999999998874
No 317
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=97.51 E-value=0.00063 Score=51.51 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=21.1
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|+.|+|||||++.++..
T Consensus 31 e~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 31 KILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999998864
No 318
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=97.49 E-value=0.0006 Score=53.12 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=21.3
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|+.|.|||||++.++..
T Consensus 34 ei~gllGpNGaGKSTLl~~l~Gl 56 (306)
T PRK13537 34 ECFGLLGPNGAGKTTTLRMLLGL 56 (306)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999998875
No 319
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.49 E-value=0.00025 Score=52.91 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=23.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
+.+++|.|++|+|||||++.+...+.
T Consensus 33 ~~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 33 RTIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 68999999999999999999888743
No 320
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=97.48 E-value=0.00011 Score=52.37 Aligned_cols=45 Identities=22% Similarity=0.257 Sum_probs=32.7
Q ss_pred cccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHH
Q 040354 29 LVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 29 ~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
++|....+.++.+.+..-... ...|.|+|..|+||+.+|+.+++.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~-~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASS-DLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTS-TS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhCC-CCCEEEEcCCCCcHHHHHHHHHHh
Confidence 367777788887776633222 367889999999999999999996
No 321
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.48 E-value=0.00065 Score=52.06 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=21.1
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|+.|+|||||++.+...
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (274)
T PRK13647 32 SKTALLGPNGAGKSTLLLHLNGI 54 (274)
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 69999999999999999998864
No 322
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.48 E-value=0.00067 Score=52.11 Aligned_cols=23 Identities=30% Similarity=0.159 Sum_probs=21.0
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|+.|+|||||++.++..
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~Gl 56 (279)
T PRK13650 34 EWLSIIGHNGSGKSTTVRLIDGL 56 (279)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999998864
No 323
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.48 E-value=0.0013 Score=51.06 Aligned_cols=64 Identities=19% Similarity=0.229 Sum_probs=46.4
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhcccc---Cc---------------------Ccc--cHHHHHHHhCCCeeEEEEec
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKITRRFE---EF---------------------PNI--GLNFQSKRLTRKKLLIVFDD 105 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~~~~f~---~~---------------------~~~--~~~~~~~~l~~~~~LlvlDd 105 (172)
..+.|+|+.|+||||+++.+++.+....+ .. ... ..+.++..++..+=.||+.+
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivGE 212 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVGE 212 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEec
Confidence 57889999999999999999987643110 00 111 45777788888888888999
Q ss_pred CCCHHhHHHH
Q 040354 106 VHHPRQIDCL 115 (172)
Q Consensus 106 v~~~~~~~~l 115 (172)
+-+.+.+..+
T Consensus 213 iR~~ea~~~l 222 (299)
T TIGR02782 213 VRGGEALDLL 222 (299)
T ss_pred cCCHHHHHHH
Confidence 9877766543
No 324
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=97.47 E-value=0.0016 Score=48.29 Aligned_cols=23 Identities=22% Similarity=0.211 Sum_probs=21.2
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|+.|+|||||++.++..
T Consensus 41 e~~~i~G~nGsGKSTLl~~l~Gl 63 (226)
T cd03248 41 EVTALVGPSGSGKSTVVALLENF 63 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 59999999999999999998865
No 325
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=97.47 E-value=0.00096 Score=55.72 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=21.0
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
..++|+|+.|+|||||++.+...
T Consensus 349 ~~~~ivG~sGsGKSTL~~ll~g~ 371 (529)
T TIGR02857 349 ERVALVGPSGAGKSTLLNLLLGF 371 (529)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999998764
No 326
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.47 E-value=9.6e-05 Score=52.95 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 040354 53 KLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 53 ~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
++.|.|++|+||||+|+.++..+
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999999998863
No 327
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.47 E-value=0.0019 Score=49.64 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=21.0
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|+|+.|+|||||++.++.-
T Consensus 31 e~~~IvG~nGsGKSTLl~~L~gl 53 (275)
T cd03289 31 QRVGLLGRTGSGKSTLLSAFLRL 53 (275)
T ss_pred CEEEEECCCCCCHHHHHHHHhhh
Confidence 58999999999999999998865
No 328
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=97.47 E-value=0.0008 Score=49.67 Aligned_cols=44 Identities=16% Similarity=0.308 Sum_probs=27.6
Q ss_pred eeEEEEecCCC---HHhHHHHHhhccCCCCCcEEEEEeCChhHHHhc
Q 040354 98 KLLIVFDDVHH---PRQIDCLIECLDWFASASRIIIISRDKQALISC 141 (172)
Q Consensus 98 ~~LlvlDdv~~---~~~~~~l~~~~~~~~~~s~iiiTtr~~~~~~~~ 141 (172)
.-+++|||++. ..-...+...+....+.+.+|+||.++.+....
T Consensus 159 ~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a 205 (220)
T PF02463_consen 159 SPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDA 205 (220)
T ss_dssp -SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 45889999973 333444444454445668899999998887664
No 329
>PRK00625 shikimate kinase; Provisional
Probab=97.47 E-value=0.00013 Score=52.12 Aligned_cols=24 Identities=17% Similarity=0.332 Sum_probs=21.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 040354 53 KLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 53 ~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
.|.|+|++|+||||+++.+.+...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999988743
No 330
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.46 E-value=0.00014 Score=51.84 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=23.8
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhc
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKITR 77 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~~ 77 (172)
..++.+.|++|+||||+|+.++..+..
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l~~ 33 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLKL 33 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 469999999999999999999987653
No 331
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=97.46 E-value=0.00073 Score=50.60 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=21.1
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|+.|+|||||++.++..
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~ 49 (237)
T TIGR00968 27 SLVALLGPSGSGKSTLLRIIAGL 49 (237)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 59999999999999999998864
No 332
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.45 E-value=0.00044 Score=53.03 Aligned_cols=26 Identities=23% Similarity=0.288 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
..++.++|++|+||||++..++....
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~ 97 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLK 97 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 58999999999999999988887643
No 333
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=97.45 E-value=0.00063 Score=48.52 Aligned_cols=85 Identities=15% Similarity=0.126 Sum_probs=51.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH-HhccccC-------c----------------------------Ccc---------
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK-ITRRFEE-------F----------------------------PNI--------- 85 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~-~~~~f~~-------~----------------------------~~~--------- 85 (172)
...+-|++..|.||||.|..++-. ....+.. . .+.
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~ 84 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAKA 84 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHHH
Confidence 367888888999999999776655 2221111 1 000
Q ss_pred cHHHHHHHhCCCe-eEEEEecCC-----CHHhHHHHHhhccCCCCCcEEEEEeCCh
Q 040354 86 GLNFQSKRLTRKK-LLIVFDDVH-----HPRQIDCLIECLDWFASASRIIIISRDK 135 (172)
Q Consensus 86 ~~~~~~~~l~~~~-~LlvlDdv~-----~~~~~~~l~~~~~~~~~~s~iiiTtr~~ 135 (172)
.....++.+.... -++|||++. ..-+.+.+...+....++.-||+|.|+.
T Consensus 85 ~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 85 AWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 2333344444444 499999994 2223344444444444667899999975
No 334
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=97.45 E-value=0.00019 Score=57.88 Aligned_cols=54 Identities=15% Similarity=0.258 Sum_probs=38.8
Q ss_pred CCccccccchHHHHHHHhcCC-----------CCCCeeEEEEEcCCCchHHHHHHHHHHHHhccc
Q 040354 26 NNHLVGIESRTEEIESVLGVG-----------STMNICKLGISGSGDIGKITIAGAIFNKITRRF 79 (172)
Q Consensus 26 ~~~~~Gr~~~~~~l~~~l~~~-----------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f 79 (172)
+.+++|.++..+.+.-.+... ..-.++.+.++|++|+|||++|+.+...+...|
T Consensus 11 d~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~f 75 (441)
T TIGR00390 11 DKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 75 (441)
T ss_pred hhhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 466889888888775444311 111147899999999999999999999855443
No 335
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=97.45 E-value=0.0013 Score=52.63 Aligned_cols=82 Identities=16% Similarity=0.091 Sum_probs=55.1
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhcccc-Cc---------------------------Ccc--cHHHHHHHhCCCeeEE
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKITRRFE-EF---------------------------PNI--GLNFQSKRLTRKKLLI 101 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~~~~f~-~~---------------------------~~~--~~~~~~~~l~~~~~Ll 101 (172)
..+.|+|+.|+||||++..+++.+..... .. .+. ....++..++..+=.|
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I 229 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKII 229 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEE
Confidence 57899999999999999999887532111 00 011 3456677788888899
Q ss_pred EEecCCCHHhHHHHHhhccCCCCCcEEEEEeCChh
Q 040354 102 VFDDVHHPRQIDCLIECLDWFASASRIIIISRDKQ 136 (172)
Q Consensus 102 vlDdv~~~~~~~~l~~~~~~~~~~s~iiiTtr~~~ 136 (172)
+++++-+.+.++....... .|-.++-|-+-.+
T Consensus 230 ~vGEiRd~et~~~al~aa~---TGH~v~tTlHa~s 261 (372)
T TIGR02525 230 GVGEIRDLETFQAAVLAGQ---SGHFCLGTLHVKS 261 (372)
T ss_pred eeCCCCCHHHHHHHHHHHh---cCCcEEEeeCCCC
Confidence 9999998887775443332 4444555555443
No 336
>PF14516 AAA_35: AAA-like domain
Probab=97.44 E-value=0.0031 Score=49.71 Aligned_cols=49 Identities=8% Similarity=0.110 Sum_probs=36.0
Q ss_pred CCCCccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 24 ENNNHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 24 ~~~~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
.++..-+.|...-+.+.+.+... ...+.|.|+..+|||+|+..+.+...
T Consensus 8 ~~~~~Yi~R~~~e~~~~~~i~~~----G~~~~I~apRq~GKTSll~~l~~~l~ 56 (331)
T PF14516_consen 8 LDSPFYIERPPAEQECYQEIVQP----GSYIRIKAPRQMGKTSLLLRLLERLQ 56 (331)
T ss_pred CCCCcccCchHHHHHHHHHHhcC----CCEEEEECcccCCHHHHHHHHHHHHH
Confidence 44455668885555666555532 26899999999999999999988743
No 337
>PRK04040 adenylate kinase; Provisional
Probab=97.44 E-value=0.00014 Score=52.73 Aligned_cols=26 Identities=19% Similarity=0.387 Sum_probs=23.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
..++.|+|++|+||||+++.+...+.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 46899999999999999999988863
No 338
>PRK05439 pantothenate kinase; Provisional
Probab=97.44 E-value=0.00025 Score=55.19 Aligned_cols=38 Identities=29% Similarity=0.372 Sum_probs=27.4
Q ss_pred HHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 39 IESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 39 l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
+..++.......+-+|+|.|.+|+||||+|+.+...+.
T Consensus 74 ~~~fl~~~~~~~~~iIgIaG~~gsGKSTla~~L~~~l~ 111 (311)
T PRK05439 74 LEQFLGKNGQKVPFIIGIAGSVAVGKSTTARLLQALLS 111 (311)
T ss_pred HHHHhcccCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34455433333368999999999999999998877543
No 339
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.43 E-value=0.0013 Score=49.19 Aligned_cols=36 Identities=22% Similarity=0.312 Sum_probs=26.0
Q ss_pred HHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHH
Q 040354 38 EIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 38 ~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+-..|..+-.. ..++.|+|++|+|||+|+.+++..
T Consensus 13 ~LD~~l~gG~~~-g~~~~i~G~~GsGKt~l~~~~~~~ 48 (234)
T PRK06067 13 ELDRKLGGGIPF-PSLILIEGDHGTGKSVLSQQFVYG 48 (234)
T ss_pred HHHHhhCCCCcC-CcEEEEECCCCCChHHHHHHHHHH
Confidence 344444433222 579999999999999999998665
No 340
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=97.43 E-value=0.00083 Score=53.15 Aligned_cols=23 Identities=35% Similarity=0.442 Sum_probs=21.3
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|+.|.|||||++.++..
T Consensus 68 ei~gLlGpNGaGKSTLl~~L~Gl 90 (340)
T PRK13536 68 ECFGLLGPNGAGKSTIARMILGM 90 (340)
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 68999999999999999999875
No 341
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=97.43 E-value=0.0007 Score=53.61 Aligned_cols=23 Identities=26% Similarity=0.291 Sum_probs=20.9
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|+.|+|||||++.+...
T Consensus 32 ei~~iiG~nGsGKSTLlk~L~Gl 54 (343)
T PRK11153 32 EIFGVIGASGAGKSTLIRCINLL 54 (343)
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 58999999999999999988764
No 342
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=97.42 E-value=0.00081 Score=52.11 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=21.9
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
.++++.|+.|+|||||.+.++..+
T Consensus 32 ei~gllG~NGAGKTTllk~l~gl~ 55 (293)
T COG1131 32 EIFGLLGPNGAGKTTLLKILAGLL 55 (293)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCc
Confidence 599999999999999999998763
No 343
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.42 E-value=0.00012 Score=50.80 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=19.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 040354 53 KLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 53 ~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
++.++|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4789999999999999998886
No 344
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=97.42 E-value=0.00086 Score=55.95 Aligned_cols=24 Identities=21% Similarity=0.447 Sum_probs=21.8
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
..++|+|..|.|||||.+.+....
T Consensus 30 ~riGLvG~NGaGKSTLLkilaG~~ 53 (530)
T COG0488 30 ERIGLVGRNGAGKSTLLKILAGEL 53 (530)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCC
Confidence 589999999999999999998763
No 345
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.42 E-value=0.0004 Score=46.80 Aligned_cols=48 Identities=19% Similarity=0.162 Sum_probs=34.6
Q ss_pred Cccccccc----hHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHH
Q 040354 27 NHLVGIES----RTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 27 ~~~~Gr~~----~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
..++|.+- .++.|..++.......+-++.++|++|+|||.+++.+++.
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 34666554 4455555555544444788899999999999999998887
No 346
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.42 E-value=0.00015 Score=51.84 Aligned_cols=24 Identities=17% Similarity=0.176 Sum_probs=21.4
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
.++.|.|++|+|||||++.+...+
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999988864
No 347
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=97.42 E-value=0.00019 Score=52.84 Aligned_cols=28 Identities=25% Similarity=0.462 Sum_probs=24.9
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhcc
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKITRR 78 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 78 (172)
+-+|+|.|.+|+||||+|+.++..+..+
T Consensus 8 ~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 8 VIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 5799999999999999999999986643
No 348
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.41 E-value=0.00012 Score=53.31 Aligned_cols=23 Identities=35% Similarity=0.648 Sum_probs=20.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 040354 53 KLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 53 ~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
+++|.|++|+|||||++.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999998764
No 349
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.41 E-value=0.00097 Score=51.25 Aligned_cols=23 Identities=26% Similarity=0.224 Sum_probs=21.0
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|+.|.|||||++.++..
T Consensus 34 e~~~i~G~nGaGKSTLl~~i~G~ 56 (279)
T PRK13635 34 EWVAIVGHNGSGKSTLAKLLNGL 56 (279)
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 58999999999999999998865
No 350
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.41 E-value=0.00091 Score=51.32 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=20.9
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|+.|+|||||++.++..
T Consensus 31 e~~~i~G~NGsGKSTLl~~l~Gl 53 (277)
T PRK13652 31 SRIAVIGPNGAGKSTLFRHFNGI 53 (277)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 59999999999999999998854
No 351
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.41 E-value=0.00047 Score=49.46 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=22.9
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
..++.|+||+|+|||||++++..+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3689999999999999999999876
No 352
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=97.40 E-value=0.00024 Score=57.37 Aligned_cols=53 Identities=13% Similarity=0.195 Sum_probs=39.4
Q ss_pred CCccccccchHHHHHHHhcC---------CC--CCCeeEEEEEcCCCchHHHHHHHHHHHHhcc
Q 040354 26 NNHLVGIESRTEEIESVLGV---------GS--TMNICKLGISGSGDIGKITIAGAIFNKITRR 78 (172)
Q Consensus 26 ~~~~~Gr~~~~~~l~~~l~~---------~~--~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 78 (172)
+.+++|.+...+.+..++.. .. .-....+.++|++|+|||+||+.+...+...
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~ 77 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAP 77 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCCh
Confidence 46688999888888776642 00 0013678999999999999999999885443
No 353
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.40 E-value=0.00015 Score=50.89 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=22.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhcc
Q 040354 53 KLGISGSGDIGKITIAGAIFNKITRR 78 (172)
Q Consensus 53 ~i~I~G~~GiGKTtLa~~~~~~~~~~ 78 (172)
+|.|.|++|+||||+|+.+.+++.-.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~ 27 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK 27 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc
Confidence 68999999999999999999985444
No 354
>PRK13947 shikimate kinase; Provisional
Probab=97.39 E-value=0.00017 Score=51.13 Aligned_cols=27 Identities=19% Similarity=0.288 Sum_probs=23.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhccc
Q 040354 53 KLGISGSGDIGKITIAGAIFNKITRRF 79 (172)
Q Consensus 53 ~i~I~G~~GiGKTtLa~~~~~~~~~~f 79 (172)
.|.|.|++|+||||+|+.+.+.+.-.|
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~ 29 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGF 29 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCE
Confidence 589999999999999999998854443
No 355
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.39 E-value=0.00018 Score=52.85 Aligned_cols=32 Identities=19% Similarity=0.136 Sum_probs=24.9
Q ss_pred HhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHH
Q 040354 42 VLGVGSTMNICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 42 ~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
|+..+... .+.+.|+|++|+|||||+..+...
T Consensus 5 ~~~~~~~~-~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 5 WLFNKPAK-PLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred cccCCCCC-CeEEEEECcCCCCHHHHHHHHHhc
Confidence 34444433 689999999999999999998754
No 356
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.39 E-value=0.00032 Score=54.20 Aligned_cols=25 Identities=28% Similarity=0.302 Sum_probs=21.6
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
+-+++|.|++|+||||+|+.+...+
T Consensus 62 p~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 62 PYIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999998775543
No 357
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.38 E-value=0.0002 Score=59.58 Aligned_cols=48 Identities=21% Similarity=0.185 Sum_probs=37.0
Q ss_pred CccccccchHHHHHHHhcCCC--CCCeeEEEEEcCCCchHHHHHHHHHHH
Q 040354 27 NHLVGIESRTEEIESVLGVGS--TMNICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~--~~~~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.++.--...++++..||.... ....+++.|+||+|+||||.++.++++
T Consensus 19 ~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~e 68 (519)
T PF03215_consen 19 DELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKE 68 (519)
T ss_pred HHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHH
Confidence 445555677889999997321 111579999999999999999999988
No 358
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=97.38 E-value=0.0011 Score=51.58 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=21.1
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|+.|+|||||++.+...
T Consensus 31 e~~~l~G~NGaGKSTLl~~l~Gl 53 (303)
T TIGR01288 31 ECFGLLGPNGAGKSTIARMLLGM 53 (303)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 59999999999999999998864
No 359
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.38 E-value=0.00014 Score=53.96 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=21.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 040354 53 KLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 53 ~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
+++|.|++|+||||||+.+...+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 478999999999999999988753
No 360
>PRK15115 response regulator GlrR; Provisional
Probab=97.38 E-value=0.0056 Score=49.95 Aligned_cols=47 Identities=19% Similarity=0.133 Sum_probs=33.8
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHH
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
..++|....+..+.+....-... ...+.|+|.+|+|||++|+.++..
T Consensus 134 ~~lig~s~~~~~~~~~~~~~a~~-~~~vli~Ge~GtGk~~lA~~ih~~ 180 (444)
T PRK15115 134 EAIVTRSPLMLRLLEQARMVAQS-DVSVLINGQSGTGKEILAQAIHNA 180 (444)
T ss_pred hcccccCHHHHHHHHHHHhhccC-CCeEEEEcCCcchHHHHHHHHHHh
Confidence 35778777766665544422222 356789999999999999999886
No 361
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.38 E-value=0.0013 Score=49.33 Aligned_cols=23 Identities=26% Similarity=0.208 Sum_probs=21.1
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
..+.|.|++|+|||||.+.+..-
T Consensus 30 EfvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998864
No 362
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.37 E-value=0.0063 Score=48.99 Aligned_cols=25 Identities=16% Similarity=0.138 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
..++.++|+.|+||||.+..++..+
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999998888764
No 363
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.36 E-value=0.0012 Score=52.82 Aligned_cols=39 Identities=31% Similarity=0.382 Sum_probs=28.0
Q ss_pred HHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 36 TEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 36 ~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
+..+...|..+-.. ..++.|.|++|+|||||+.+++...
T Consensus 68 i~eLD~vLgGGi~~-GslvLI~G~pG~GKStLllq~a~~~ 106 (372)
T cd01121 68 IEELDRVLGGGLVP-GSVILIGGDPGIGKSTLLLQVAARL 106 (372)
T ss_pred CHHHHHhhcCCccC-CeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34444555433222 4789999999999999999988764
No 364
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=97.36 E-value=0.0013 Score=55.71 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=20.9
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
..++|+|+.|+|||||++.+...
T Consensus 362 ~~~~ivG~sGsGKSTL~~ll~g~ 384 (585)
T TIGR01192 362 QTVAIVGPTGAGKTTLINLLQRV 384 (585)
T ss_pred CEEEEECCCCCCHHHHHHHHccC
Confidence 68999999999999999988765
No 365
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.36 E-value=0.00062 Score=54.22 Aligned_cols=41 Identities=10% Similarity=-0.001 Sum_probs=29.9
Q ss_pred hHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhc
Q 040354 35 RTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITR 77 (172)
Q Consensus 35 ~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~ 77 (172)
...++.+.+..-.. -....|+|++|+|||||++.+++.+..
T Consensus 119 ~~~RvID~l~PiGk--GQR~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 119 LSMRVVDLVAPIGK--GQRGLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred hhHhhhhheeecCC--CceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 33456666663322 257799999999999999999888544
No 366
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=97.36 E-value=0.0013 Score=55.48 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=21.2
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
..++|+|+.|+|||||++.++..
T Consensus 367 e~i~IvG~sGsGKSTLlklL~gl 389 (576)
T TIGR02204 367 ETVALVGPSGAGKSTLFQLLLRF 389 (576)
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 58999999999999999998876
No 367
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=97.36 E-value=0.0014 Score=53.92 Aligned_cols=47 Identities=19% Similarity=0.300 Sum_probs=37.3
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHH
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
..++|+...+..+...+..-... ...+.|+|.+|+|||++|+.++..
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~~~-~~~vli~Ge~GtGK~~lA~~ih~~ 184 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLSRS-SISVLINGESGTGKELVAHALHRH 184 (469)
T ss_pred ccceecCHHHHHHHHHHHHHhcc-CCeEEEEeCCCCcHHHHHHHHHhc
Confidence 46889888888887766533322 467899999999999999999886
No 368
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.35 E-value=0.0013 Score=55.47 Aligned_cols=24 Identities=33% Similarity=0.338 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
...++|+|+.|+|||||++.+...
T Consensus 341 G~~~~ivG~sGsGKSTLl~ll~g~ 364 (569)
T PRK10789 341 GQMLGICGPTGSGKSTLLSLIQRH 364 (569)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 368999999999999999988765
No 369
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=97.35 E-value=0.0024 Score=46.68 Aligned_cols=24 Identities=25% Similarity=0.205 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
-.+++|.|+.|.||||+.+.++.-
T Consensus 28 Gei~GlLG~NGAGKTT~LRmiatl 51 (245)
T COG4555 28 GEITGLLGENGAGKTTLLRMIATL 51 (245)
T ss_pred ceEEEEEcCCCCCchhHHHHHHHh
Confidence 379999999999999999998875
No 370
>PRK06217 hypothetical protein; Validated
Probab=97.35 E-value=0.00021 Score=51.42 Aligned_cols=24 Identities=21% Similarity=0.512 Sum_probs=21.5
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
..|.|.|.+|+||||+|+++....
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 358999999999999999999874
No 371
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=97.35 E-value=0.0019 Score=55.91 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=21.2
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
..++|+|+.|+|||||++.+...
T Consensus 508 e~vaIvG~SGsGKSTLl~lL~gl 530 (711)
T TIGR00958 508 EVVALVGPSGSGKSTVAALLQNL 530 (711)
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 68999999999999999998875
No 372
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.35 E-value=0.00019 Score=49.30 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=21.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 040354 53 KLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 53 ~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
+|.|.|++|+||||+|+.+.....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998753
No 373
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.35 E-value=0.00038 Score=52.56 Aligned_cols=42 Identities=21% Similarity=0.301 Sum_probs=29.4
Q ss_pred hHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhc
Q 040354 35 RTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITR 77 (172)
Q Consensus 35 ~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~ 77 (172)
+...+.+.+...... ..+|+|+|+||+|||||...+...+..
T Consensus 14 ~~~~ll~~l~~~~g~-a~~iGiTG~PGaGKSTli~~l~~~~~~ 55 (266)
T PF03308_consen 14 EARELLKRLYPHTGR-AHVIGITGPPGAGKSTLIDALIRELRE 55 (266)
T ss_dssp HHHHHHHHHGGGTT--SEEEEEEE-TTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCC-ceEEEeeCCCCCcHHHHHHHHHHHHhh
Confidence 344455544433333 689999999999999999999888544
No 374
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.35 E-value=0.0011 Score=54.85 Aligned_cols=41 Identities=17% Similarity=0.172 Sum_probs=32.9
Q ss_pred cchHHHHHHHhc-----CCCCCCeeEEEEEcCCCchHHHHHHHHHHH
Q 040354 33 ESRTEEIESVLG-----VGSTMNICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 33 ~~~~~~l~~~l~-----~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
...++++..||. ...-. .+++.|+|++|+||||.++.++..
T Consensus 88 kkKI~eVk~WL~~~~~~~~~l~-~~iLLltGPsGcGKSTtvkvLske 133 (634)
T KOG1970|consen 88 KKKISEVKQWLKQVAEFTPKLG-SRILLLTGPSGCGKSTTVKVLSKE 133 (634)
T ss_pred HHhHHHHHHHHHHHHHhccCCC-ceEEEEeCCCCCCchhHHHHHHHh
Confidence 455778888887 33322 589999999999999999998887
No 375
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=97.35 E-value=0.00092 Score=53.48 Aligned_cols=23 Identities=22% Similarity=0.133 Sum_probs=21.2
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|+.|+|||||++.++.-
T Consensus 30 e~~~l~G~nGsGKSTLL~~iaGl 52 (369)
T PRK11000 30 EFVVFVGPSGCGKSTLLRMIAGL 52 (369)
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 58999999999999999999865
No 376
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.35 E-value=0.0028 Score=47.15 Aligned_cols=89 Identities=15% Similarity=0.050 Sum_probs=50.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH-H---hccccCc----------------------Ccc-----cHHHHHHHh--CCC
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK-I---TRRFEEF----------------------PNI-----GLNFQSKRL--TRK 97 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~-~---~~~f~~~----------------------~~~-----~~~~~~~~l--~~~ 97 (172)
.+++.|+|+.|.||||+.+.+.-- + ...|-.. .++ -...+...+ ...
T Consensus 30 ~~~~~l~G~n~~GKstll~~i~~~~~la~~g~~vpa~~~~~~~~~~il~~~~l~d~~~~~lS~~~~e~~~~a~il~~~~~ 109 (222)
T cd03285 30 SRFLIITGPNMGGKSTYIRQIGVIVLMAQIGCFVPCDSADIPIVDCILARVGASDSQLKGVSTFMAEMLETAAILKSATE 109 (222)
T ss_pred CeEEEEECCCCCChHHHHHHHHHHHHHHHhCCCcCcccEEEeccceeEeeeccccchhcCcChHHHHHHHHHHHHHhCCC
Confidence 478999999999999998876543 1 1101000 111 112222333 356
Q ss_pred eeEEEEecC---CCHHh----HHHHHhhccCCCCCcEEEEEeCChhHHHh
Q 040354 98 KLLIVFDDV---HHPRQ----IDCLIECLDWFASASRIIIISRDKQALIS 140 (172)
Q Consensus 98 ~~LlvlDdv---~~~~~----~~~l~~~~~~~~~~s~iiiTtr~~~~~~~ 140 (172)
+-|+++|+. .+..+ ...+...+.. ..++.+|++|+...+...
T Consensus 110 ~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~-~~~~~vlisTH~~el~~~ 158 (222)
T cd03285 110 NSLIIIDELGRGTSTYDGFGLAWAIAEYIAT-QIKCFCLFATHFHELTAL 158 (222)
T ss_pred CeEEEEecCcCCCChHHHHHHHHHHHHHHHh-cCCCeEEEEechHHHHHH
Confidence 889999999 43222 1112122221 246789999997665544
No 377
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.34 E-value=0.00019 Score=51.52 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 040354 53 KLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 53 ~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+.|.|++|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999998
No 378
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.34 E-value=0.029 Score=43.64 Aligned_cols=127 Identities=6% Similarity=0.113 Sum_probs=81.6
Q ss_pred HHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHH-hcc---------------ccC-cCcccHHHHHHHh----
Q 040354 36 TEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKI-TRR---------------FEE-FPNIGLNFQSKRL---- 94 (172)
Q Consensus 36 ~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~-~~~---------------f~~-~~~~~~~~~~~~l---- 94 (172)
.+.+.+.+..+.- ..+..++|+.|+||+++|..+.+.+ +.+ |+. ...+..+.+++..
T Consensus 5 ~~~l~~~i~~~~l--~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir~l~~~~~ 82 (299)
T PRK07132 5 IKFLDNSATQNKI--SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFLSAINKLY 82 (299)
T ss_pred HHHHHHHHHhCCC--CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHHHHHHHhc
Confidence 3444555544332 4788899999999999999999885 211 110 0112223333221
Q ss_pred --C---CCeeEEEEecCCCH--HhHHHHHhhccCCCCCcEEEEEeCC-hhHHHh-cCCCceEEcCCCCHHHHHHHHhhh
Q 040354 95 --T---RKKLLIVFDDVHHP--RQIDCLIECLDWFASASRIIIISRD-KQALIS-CGVNKIYQMQELVHADALKLFSEC 164 (172)
Q Consensus 95 --~---~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~s~iiiTtr~-~~~~~~-~~~~~~~~l~~l~~~~~~~lf~~~ 164 (172)
. +++-++|+|+++.. ...+.++..+..-.+.+.+|++|.+ ..+... ......+++.+++.++..+.+...
T Consensus 83 ~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~~ 161 (299)
T PRK07132 83 FSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLSK 161 (299)
T ss_pred cCCcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHHc
Confidence 1 36678899999744 4577888888776677777766644 344433 345678999999999988777654
No 379
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.34 E-value=0.0014 Score=56.58 Aligned_cols=23 Identities=26% Similarity=0.318 Sum_probs=21.2
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
..++|+|+.|+|||||++.+...
T Consensus 484 ~~vaivG~sGsGKSTL~~ll~g~ 506 (694)
T TIGR01846 484 EFIGIVGPSGSGKSTLTKLLQRL 506 (694)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999998875
No 380
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=97.34 E-value=0.00074 Score=55.38 Aligned_cols=24 Identities=38% Similarity=0.462 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+..+++|..|+|||||.+++.+.
T Consensus 106 GrRYGLvGrNG~GKsTLLRaia~~ 129 (582)
T KOG0062|consen 106 GRRYGLVGRNGIGKSTLLRAIANG 129 (582)
T ss_pred ccccceeCCCCCcHHHHHHHHHhc
Confidence 377899999999999999999994
No 381
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.33 E-value=0.0011 Score=55.47 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=20.9
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
..++|+|+.|+|||||++.+...
T Consensus 362 ~~vaIvG~SGsGKSTLl~lL~g~ 384 (529)
T TIGR02868 362 ERVAILGPSGSGKSTLLMLLTGL 384 (529)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999988764
No 382
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.33 E-value=0.00024 Score=49.00 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=22.2
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
+++.|+|..|+|||||++.+++.+.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~ 25 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELK 25 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4789999999999999999999854
No 383
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.0069 Score=46.11 Aligned_cols=135 Identities=16% Similarity=0.250 Sum_probs=75.6
Q ss_pred CccccccchHHHHHHHhcCCC----------CCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc--Ccc-------cH
Q 040354 27 NHLVGIESRTEEIESVLGVGS----------TMNICKLGISGSGDIGKITIAGAIFNKITRRFEEF--PNI-------GL 87 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~----------~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~--~~~-------~~ 87 (172)
+++=|-+..++++++.+.-.- -..+.-+..||++|.|||-+|++.+.+....|-.. ..+ ..
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfIGdGA 250 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGA 250 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhhcchH
Confidence 345577778888777554111 11257789999999999999999888755555432 111 23
Q ss_pred HHHHHHh---C-CCeeEEEEecCCCH----------------HhHHHHHhhccCCCC--CcEEEEEeCChh-----HHHh
Q 040354 88 NFQSKRL---T-RKKLLIVFDDVHHP----------------RQIDCLIECLDWFAS--ASRIIIISRDKQ-----ALIS 140 (172)
Q Consensus 88 ~~~~~~l---~-~~~~LlvlDdv~~~----------------~~~~~l~~~~~~~~~--~s~iiiTtr~~~-----~~~~ 140 (172)
..++..+ + ..+.+|++|+++-. ...-.++..+.-+++ ..+||..|..-+ ++.+
T Consensus 251 kLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiLDPALlRS 330 (424)
T KOG0652|consen 251 KLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDPALLRS 330 (424)
T ss_pred HHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccccCHHHhhc
Confidence 3333332 2 35789999988521 113345556665554 346666554322 2222
Q ss_pred cCCCceEEcCCCCHHHHHHHH
Q 040354 141 CGVNKIYQMQELVHADALKLF 161 (172)
Q Consensus 141 ~~~~~~~~l~~l~~~~~~~lf 161 (172)
-...+.++.+--+++.-..++
T Consensus 331 GRLDRKIEfP~Pne~aRarIl 351 (424)
T KOG0652|consen 331 GRLDRKIEFPHPNEEARARIL 351 (424)
T ss_pred ccccccccCCCCChHHHHHHH
Confidence 223445666555554433333
No 384
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=97.32 E-value=0.0016 Score=56.30 Aligned_cols=23 Identities=30% Similarity=0.309 Sum_probs=20.9
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
..++|+|++|+|||||++.+...
T Consensus 501 ~~vaIvG~SGsGKSTLlklL~gl 523 (708)
T TIGR01193 501 SKTTIVGMSGSGKSTLAKLLVGF 523 (708)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 58999999999999999988765
No 385
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=97.32 E-value=0.00018 Score=52.02 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=20.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 040354 53 KLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 53 ~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
+|+|.|.+|+||||||+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999999998874
No 386
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=97.32 E-value=0.0032 Score=52.21 Aligned_cols=82 Identities=11% Similarity=0.095 Sum_probs=55.8
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhcc-ccCc-------------------Cc--c-cHHHHHHHhCCCeeEEEEecCC
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKITRR-FEEF-------------------PN--I-GLNFQSKRLTRKKLLIVFDDVH 107 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~-f~~~-------------------~~--~-~~~~~~~~l~~~~~LlvlDdv~ 107 (172)
..++.|+|+.|+||||++..+.+.+... .... .. . ....++..++..+=.|++.++-
T Consensus 242 ~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiR 321 (486)
T TIGR02533 242 HGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIR 321 (486)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeeecCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCC
Confidence 3689999999999999999888774321 1000 11 1 4678888888899999999998
Q ss_pred CHHhHHHHHhhccCCCCCcEEEEEeCCh
Q 040354 108 HPRQIDCLIECLDWFASASRIIIISRDK 135 (172)
Q Consensus 108 ~~~~~~~l~~~~~~~~~~s~iiiTtr~~ 135 (172)
+.+.......... .|-.|+-|-+-.
T Consensus 322 d~eta~~a~~aa~---tGHlvlsTlHa~ 346 (486)
T TIGR02533 322 DLETAQIAIQASL---TGHLVLSTLHTN 346 (486)
T ss_pred CHHHHHHHHHHHH---hCCcEEEEECCC
Confidence 8876655443332 344455555543
No 387
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.31 E-value=0.0015 Score=49.01 Aligned_cols=23 Identities=17% Similarity=0.170 Sum_probs=20.2
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
..+.|.|++|+|||||++.+..-
T Consensus 31 e~~~i~G~nGsGKSTL~~~l~GL 53 (235)
T COG1122 31 ERVLLIGPNGSGKSTLLKLLNGL 53 (235)
T ss_pred CEEEEECCCCCCHHHHHHHHcCc
Confidence 58999999999999999987653
No 388
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=97.31 E-value=0.00044 Score=60.80 Aligned_cols=107 Identities=15% Similarity=0.139 Sum_probs=64.7
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH-hccccCc--------------------------------Ccc----cHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI-TRRFEEF--------------------------------PNI----GLNFQSKR 93 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~-~~~f~~~--------------------------------~~~----~~~~~~~~ 93 (172)
..-+.|+|.+|+||||+...++-.. .+.+... ... ......+.
T Consensus 222 ~~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~e~ 301 (824)
T COG5635 222 YAKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQGIAKQLIEAHQEL 301 (824)
T ss_pred hhheeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccCCcchhhHHHHHH
Confidence 3578999999999999999888762 2222211 000 22222467
Q ss_pred hCCCeeEEEEecCCCHHh------HHHHHhhccCCCCCcEEEEEeCChhHHHhcCCCceEEcCCCCHHHHH
Q 040354 94 LTRKKLLIVFDDVHHPRQ------IDCLIECLDWFASASRIIIISRDKQALISCGVNKIYQMQELVHADAL 158 (172)
Q Consensus 94 l~~~~~LlvlDdv~~~~~------~~~l~~~~~~~~~~s~iiiTtr~~~~~~~~~~~~~~~l~~l~~~~~~ 158 (172)
+..+++++++|.++.... ...+ ..+....+.+.+|+|+|....-.....-..+++..+.++...
T Consensus 302 l~~g~~llLlDGlDe~~~~~~~~~~~~i-~~f~~~~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~ 371 (824)
T COG5635 302 LKTGKLLLLLDGLDELEPKNQRALIREI-NKFLQEYPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQIN 371 (824)
T ss_pred HhccchhhHhhccchhhhhhHHHHHHHH-HHHhhhccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHH
Confidence 888899999999975421 1221 122222357789999987654433322334566666665444
No 389
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.31 E-value=0.0021 Score=48.08 Aligned_cols=54 Identities=19% Similarity=0.233 Sum_probs=34.0
Q ss_pred HHHHHHHhCCCeeEEEEecCC------CHHhHHHHHhhccCCCCCcEEEEEeCChhHHHhc
Q 040354 87 LNFQSKRLTRKKLLIVFDDVH------HPRQIDCLIECLDWFASASRIIIISRDKQALISC 141 (172)
Q Consensus 87 ~~~~~~~l~~~~~LlvlDdv~------~~~~~~~l~~~~~~~~~~s~iiiTtr~~~~~~~~ 141 (172)
...+.+.+.-.+-||++|+-. ....++.|...+... -|..+++.|++-+.+..+
T Consensus 153 RvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~-lg~T~i~VTHDl~s~~~i 212 (263)
T COG1127 153 RVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDA-LGLTVIMVTHDLDSLLTI 212 (263)
T ss_pred HHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHh-hCCEEEEEECChHHHHhh
Confidence 345556666677899999884 223466666555433 355688888886655443
No 390
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.30 E-value=0.00065 Score=48.31 Aligned_cols=31 Identities=23% Similarity=0.241 Sum_probs=26.4
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhccccCc
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKITRRFEEF 82 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~ 82 (172)
+.|.++|+.|+||||+.+.+++.+.-+|-..
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~ 33 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDT 33 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccc
Confidence 5789999999999999999998876666554
No 391
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.30 E-value=0.0014 Score=47.85 Aligned_cols=21 Identities=24% Similarity=0.151 Sum_probs=19.8
Q ss_pred eEEEEEcCCCchHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIF 72 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~ 72 (172)
+++.|+|+.|+|||||.+.+.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 689999999999999999987
No 392
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=97.30 E-value=0.0019 Score=55.90 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=21.1
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
..++|+|+.|+|||||++.+...
T Consensus 506 e~vaIvG~sGsGKSTLlklL~gl 528 (710)
T TIGR03796 506 QRVALVGGSGSGKSTIAKLVAGL 528 (710)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999998765
No 393
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.30 E-value=0.0018 Score=54.79 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=21.3
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
..++|+|++|+|||||++.++..
T Consensus 367 ~~~aivG~sGsGKSTL~~ll~g~ 389 (574)
T PRK11160 367 EKVALLGRTGCGKSTLLQLLTRA 389 (574)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999998875
No 394
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.30 E-value=0.00019 Score=49.30 Aligned_cols=25 Identities=20% Similarity=0.407 Sum_probs=21.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhc
Q 040354 53 KLGISGSGDIGKITIAGAIFNKITR 77 (172)
Q Consensus 53 ~i~I~G~~GiGKTtLa~~~~~~~~~ 77 (172)
.+.|+|++|+|||||++.+......
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~ 25 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDP 25 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCc
Confidence 3689999999999999999987433
No 395
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.29 E-value=0.0057 Score=49.87 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
.+++.++|++|+||||++..++...
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~ 245 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARY 245 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3689999999999999988877664
No 396
>PRK13949 shikimate kinase; Provisional
Probab=97.29 E-value=0.00026 Score=50.37 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=21.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhc
Q 040354 53 KLGISGSGDIGKITIAGAIFNKITR 77 (172)
Q Consensus 53 ~i~I~G~~GiGKTtLa~~~~~~~~~ 77 (172)
.|.|+|++|+||||+++.++..+.-
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~ 27 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGL 27 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC
Confidence 5899999999999999999987543
No 397
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=97.29 E-value=0.0013 Score=52.17 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=20.9
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|++|+|||||++.+..-
T Consensus 32 ei~gIiG~sGaGKSTLlr~I~gl 54 (343)
T TIGR02314 32 QIYGVIGASGAGKSTLIRCVNLL 54 (343)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999988764
No 398
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.28 E-value=0.0033 Score=44.80 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=21.5
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
-.+.|.|++|+|||||.+.+++-+
T Consensus 30 e~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 30 EFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred ceEEEeCCCCccHHHHHHHHHhcc
Confidence 478999999999999999998763
No 399
>PRK14530 adenylate kinase; Provisional
Probab=97.28 E-value=0.00025 Score=52.34 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=21.4
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
+.|.|.|++|+||||+|+.++..+
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998764
No 400
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.28 E-value=0.0021 Score=47.86 Aligned_cols=90 Identities=14% Similarity=0.079 Sum_probs=53.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH-Hhc---c-----------ccCc-------Ccc---------cHHHHHHHhC--CC
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK-ITR---R-----------FEEF-------PNI---------GLNFQSKRLT--RK 97 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~-~~~---~-----------f~~~-------~~~---------~~~~~~~~l~--~~ 97 (172)
..++.|.|+.|.||||+.+.+..- +.. . |+.. +++ -...+...+. ++
T Consensus 31 g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~~~~ 110 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMSTFMVELSETSHILSNCTS 110 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEEecCccccccccchHHHHHHHHHHHHHhCCC
Confidence 368899999999999999988772 111 1 1111 111 1222333333 46
Q ss_pred eeEEEEecCC---C-HH--h-HHHHHhhccCCCCCcEEEEEeCChhHHHhc
Q 040354 98 KLLIVFDDVH---H-PR--Q-IDCLIECLDWFASASRIIIISRDKQALISC 141 (172)
Q Consensus 98 ~~LlvlDdv~---~-~~--~-~~~l~~~~~~~~~~s~iiiTtr~~~~~~~~ 141 (172)
+.|+++|+.. + .+ . ...+...+... .++.+|++|++..+....
T Consensus 111 ~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~-~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 111 RSLVILDELGRGTSTHDGIAIAYATLHYLLEE-KKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred CeEEEEccCCCCCChhhHHHHHHHHHHHHHhc-cCCeEEEEcccHHHHHHH
Confidence 8999999983 2 11 1 12233333322 467899999998876543
No 401
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.27 E-value=0.00037 Score=49.77 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=23.4
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
.+++.|+|..|+|||||++.+...+.
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHHHh
Confidence 57999999999999999999998754
No 402
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.27 E-value=0.00021 Score=51.01 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=21.2
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.++.|+|++|+|||||++.++..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHcc
Confidence 57899999999999999999885
No 403
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=97.27 E-value=0.0039 Score=47.28 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=21.0
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|+.|+|||||++.++..
T Consensus 48 e~~~i~G~nGsGKSTLl~~l~Gl 70 (257)
T cd03288 48 QKVGICGRTGSGKSSLSLAFFRM 70 (257)
T ss_pred CEEEEECCCCCCHHHHHHHHHcc
Confidence 58999999999999999988765
No 404
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.27 E-value=0.0017 Score=54.96 Aligned_cols=23 Identities=22% Similarity=0.292 Sum_probs=21.1
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
..++|+|+.|+|||||++.+...
T Consensus 368 e~iaIvG~SGsGKSTLl~lL~gl 390 (592)
T PRK10790 368 GFVALVGHTGSGKSTLASLLMGY 390 (592)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 68999999999999999998775
No 405
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.27 E-value=0.00079 Score=51.05 Aligned_cols=89 Identities=24% Similarity=0.194 Sum_probs=54.5
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhcc-----ccCc--------------------------------Ccc-----cHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKITRR-----FEEF--------------------------------PNI-----GLNF 89 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~~~~-----f~~~--------------------------------~~~-----~~~~ 89 (172)
.+++|+|.+|+||||+++.+..-.... |+.. ..+ -.-.
T Consensus 40 e~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~ 119 (268)
T COG4608 40 ETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIG 119 (268)
T ss_pred CEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHH
Confidence 699999999999999999998753321 3321 111 1233
Q ss_pred HHHHhCCCeeEEEEecCCCH------HhHHHHHhhccCCCCCcEEEEEeCChhHHHhc
Q 040354 90 QSKRLTRKKLLIVFDDVHHP------RQIDCLIECLDWFASASRIIIISRDKQALISC 141 (172)
Q Consensus 90 ~~~~l~~~~~LlvlDdv~~~------~~~~~l~~~~~~~~~~s~iiiTtr~~~~~~~~ 141 (172)
+.+.+.-++-++|.|+..+. .+.-.++..+.. ..|-..++.|+|-.++..+
T Consensus 120 IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~-~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 120 IARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE-ELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred HHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH-HhCCeEEEEEEEHHhhhhh
Confidence 34445556789999998532 222233333322 1345578888887776664
No 406
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=97.26 E-value=0.001 Score=53.50 Aligned_cols=61 Identities=8% Similarity=0.081 Sum_probs=36.3
Q ss_pred HHHHHHHhCCCeeEEEEecCCCH---HhHHHHHhhccCCC--CCcEEEEEeCChhHHHhcCCCceE
Q 040354 87 LNFQSKRLTRKKLLIVFDDVHHP---RQIDCLIECLDWFA--SASRIIIISRDKQALISCGVNKIY 147 (172)
Q Consensus 87 ~~~~~~~l~~~~~LlvlDdv~~~---~~~~~l~~~~~~~~--~~s~iiiTtr~~~~~~~~~~~~~~ 147 (172)
...+...+.++.-+++.|..... -....+...+.... .|+.+++.|+.+++...+.++..+
T Consensus 515 R~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li 580 (593)
T COG2401 515 RAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLI 580 (593)
T ss_pred HHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeE
Confidence 34556667777789999988532 22222222222222 466677777778888777665543
No 407
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=97.26 E-value=0.0024 Score=50.05 Aligned_cols=81 Identities=16% Similarity=0.158 Sum_probs=53.9
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhcc--------------ccC--c--------Ccc-cHHHHHHHhCCCeeEEEEec
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKITRR--------------FEE--F--------PNI-GLNFQSKRLTRKKLLIVFDD 105 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~--------------f~~--~--------~~~-~~~~~~~~l~~~~~LlvlDd 105 (172)
...+.|+|..|+||||+++.++..+... +.. . ... ..+.++..++.++=.||+.+
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivGE 227 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVGE 227 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEec
Confidence 3689999999999999999998763110 000 0 112 56778888888888999999
Q ss_pred CCCHHhHHHHHhhccCCCCCcEEEEEeCC
Q 040354 106 VHHPRQIDCLIECLDWFASASRIIIISRD 134 (172)
Q Consensus 106 v~~~~~~~~l~~~~~~~~~~s~iiiTtr~ 134 (172)
+-+.+.+..+ ........|+ +-|.+-
T Consensus 228 iR~~Ea~~~l-~A~~tGh~G~--~tTiHa 253 (319)
T PRK13894 228 VRGPEALDLL-MAWNTGHEGG--AATLHA 253 (319)
T ss_pred cCCHHHHHHH-HHHHcCCCce--EEEECC
Confidence 9887766643 3443333343 444443
No 408
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.26 E-value=0.00079 Score=51.89 Aligned_cols=28 Identities=18% Similarity=0.203 Sum_probs=24.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhcc
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKITRR 78 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 78 (172)
..++.|.|.+|+|||||+..+.+.+...
T Consensus 104 ~~~v~l~G~pGsGKTTLl~~l~~~l~~~ 131 (290)
T PRK10463 104 QLVLNLVSSPGSGKTTLLTETLMRLKDS 131 (290)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccC
Confidence 6899999999999999999998875443
No 409
>COG3903 Predicted ATPase [General function prediction only]
Probab=97.26 E-value=6.6e-05 Score=59.73 Aligned_cols=111 Identities=20% Similarity=0.275 Sum_probs=74.6
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhccccCc--------------------Ccc---------cHHHHHHHhCCCeeEE
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKITRRFEEF--------------------PNI---------GLNFQSKRLTRKKLLI 101 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~--------------------~~~---------~~~~~~~~l~~~~~Ll 101 (172)
.+.+.++|++||||||++-.+.. +...|... ..+ ....+.....+++.++
T Consensus 14 ~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g~~~~~~~~~~~~~rr~ll 92 (414)
T COG3903 14 LRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPGDSAVDTLVRRIGDRRALL 92 (414)
T ss_pred hheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCchhHhHHHHHhhcccccccchHHHHHHHHHHhhhhHHH
Confidence 58999999999999999988887 44444433 111 2335566777889999
Q ss_pred EEecCCCH-HhHHHHHhhccCCCCCcEEEEEeCChhHHHhcCCCceEEcCCCCHH-HHHHHHhhhc
Q 040354 102 VFDDVHHP-RQIDCLIECLDWFASASRIIIISRDKQALISCGVNKIYQMQELVHA-DALKLFSECA 165 (172)
Q Consensus 102 vlDdv~~~-~~~~~l~~~~~~~~~~s~iiiTtr~~~~~~~~~~~~~~~l~~l~~~-~~~~lf~~~a 165 (172)
++||.... ++-..+...+...++.-.++.|+|+.... .....+.+++|+.. ++.++|...+
T Consensus 93 vldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra 155 (414)
T COG3903 93 VLDNCEHLLDACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRA 155 (414)
T ss_pred HhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHH
Confidence 99999654 33333444454455555688888865432 34456778888765 5777776543
No 410
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.00061 Score=52.42 Aligned_cols=79 Identities=18% Similarity=0.296 Sum_probs=51.1
Q ss_pred ccccccchHHHHHHHhcCCC-----------CCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc--Cc-----c--cH
Q 040354 28 HLVGIESRTEEIESVLGVGS-----------TMNICKLGISGSGDIGKITIAGAIFNKITRRFEEF--PN-----I--GL 87 (172)
Q Consensus 28 ~~~Gr~~~~~~l~~~l~~~~-----------~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~--~~-----~--~~ 87 (172)
++=|-+..+.+|.+...-.- .. +.-+.+||++|.|||-||++++|+....|-.. ++ + ..
T Consensus 186 diGGle~QiQEiKEsvELPLthPE~YeemGikp-PKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGp 264 (440)
T KOG0726|consen 186 DIGGLESQIQEIKESVELPLTHPEYYEEMGIKP-PKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGP 264 (440)
T ss_pred ccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCC-CCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccch
Confidence 34467777777766543211 12 57789999999999999999999876666543 11 1 22
Q ss_pred HHHHHHhC----CCeeEEEEecCC
Q 040354 88 NFQSKRLT----RKKLLIVFDDVH 107 (172)
Q Consensus 88 ~~~~~~l~----~~~~LlvlDdv~ 107 (172)
..+++.++ .-+.++++|+++
T Consensus 265 klvRqlF~vA~e~apSIvFiDEId 288 (440)
T KOG0726|consen 265 KLVRELFRVAEEHAPSIVFIDEID 288 (440)
T ss_pred HHHHHHHHHHHhcCCceEEeehhh
Confidence 33333322 246788999985
No 411
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.26 E-value=0.00038 Score=49.61 Aligned_cols=25 Identities=32% Similarity=0.361 Sum_probs=22.8
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
..++.|.|.+|+||||+|+.+....
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4799999999999999999999875
No 412
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=97.26 E-value=0.0038 Score=46.23 Aligned_cols=88 Identities=13% Similarity=0.124 Sum_probs=50.8
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH-Hhc-----------cccCc----------Ccc---c------HHHHHHHhC--CCe
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK-ITR-----------RFEEF----------PNI---G------LNFQSKRLT--RKK 98 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~-~~~-----------~f~~~----------~~~---~------~~~~~~~l~--~~~ 98 (172)
.++.|+|+.|.||||+.+.+..- +-. .+... +++ . ...+...+. .++
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~vp~~~~~i~~~~~i~~~~~~~~~ls~g~s~f~~e~~~l~~~l~~~~~~ 110 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVALIALLAQIGSFVPASKAEIGVVDRIFTRIGASDDLAGGRSTFMVEMVETANILNNATER 110 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHhccCCeeccccceecceeeEeccCCchhhhccCcchHHHHHHHHHHHHHhCCCC
Confidence 68999999999999999998532 000 00000 222 0 112333443 478
Q ss_pred eEEEEecC---CCHHh----HHHHHhhccCCCCCcEEEEEeCChhHHHh
Q 040354 99 LLIVFDDV---HHPRQ----IDCLIECLDWFASASRIIIISRDKQALIS 140 (172)
Q Consensus 99 ~LlvlDdv---~~~~~----~~~l~~~~~~~~~~s~iiiTtr~~~~~~~ 140 (172)
-++++|+. .+..+ ...+...+... .++.+|++|++..+...
T Consensus 111 ~llllDEp~~gt~~lD~~~~~~~il~~l~~~-~~~~vi~~TH~~~l~~l 158 (216)
T cd03284 111 SLVLLDEIGRGTSTYDGLSIAWAIVEYLHEK-IGAKTLFATHYHELTEL 158 (216)
T ss_pred eEEEEecCCCCCChHHHHHHHHHHHHHHHhc-cCCcEEEEeCcHHHHHH
Confidence 89999998 43222 22233333221 36679999998765443
No 413
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=97.26 E-value=0.0015 Score=52.44 Aligned_cols=23 Identities=26% Similarity=0.203 Sum_probs=21.2
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|++|+|||||.+.++.-
T Consensus 41 e~~~LlGpsGsGKSTLLr~IaGl 63 (375)
T PRK09452 41 EFLTLLGPSGCGKTTVLRLIAGF 63 (375)
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 58999999999999999999864
No 414
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=97.25 E-value=0.00026 Score=50.90 Aligned_cols=24 Identities=33% Similarity=0.542 Sum_probs=21.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 040354 53 KLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 53 ~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
+|+|.|.+|+||||||+.+...+.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~ 24 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999988753
No 415
>PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins. GvpD is thought to be involved in the regulation of gas vesicle formation [,].; GO: 0005524 ATP binding
Probab=97.25 E-value=0.00075 Score=53.83 Aligned_cols=38 Identities=21% Similarity=0.150 Sum_probs=29.6
Q ss_pred HHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccC
Q 040354 41 SVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITRRFEE 81 (172)
Q Consensus 41 ~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~ 81 (172)
+++..+. -..+.|-|+||+|||++|-.+.+.++++.+.
T Consensus 3 ~FF~~~~---G~TLLIKG~PGTGKTtfaLelL~~l~~~~~v 40 (484)
T PF07088_consen 3 RFFTQEP---GQTLLIKGEPGTGKTTFALELLNSLKDHGNV 40 (484)
T ss_pred hhhcCCC---CcEEEEecCCCCCceeeehhhHHHHhccCCe
Confidence 3444444 3689999999999999999999987766543
No 416
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=97.25 E-value=0.0021 Score=55.03 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=21.3
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|+|+.|+|||||++.++..
T Consensus 339 e~~~l~G~NGsGKSTLlk~l~G~ 361 (638)
T PRK10636 339 SRIGLLGRNGAGKSTLIKLLAGE 361 (638)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999875
No 417
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=97.25 E-value=0.0014 Score=54.67 Aligned_cols=47 Identities=21% Similarity=0.298 Sum_probs=38.0
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHH
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
+.++|....+..+.+.+..-... ...|.|.|.+|+||+.+|+.+++.
T Consensus 212 ~~iiG~S~~m~~~~~~i~~~A~~-~~pVLI~GE~GTGKe~lA~~IH~~ 258 (526)
T TIGR02329 212 DDLLGASAPMEQVRALVRLYARS-DATVLILGESGTGKELVAQAIHQL 258 (526)
T ss_pred hheeeCCHHHHHHHHHHHHHhCC-CCcEEEECCCCcCHHHHHHHHHHh
Confidence 45899998888888877532222 468999999999999999999986
No 418
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=97.25 E-value=0.0003 Score=46.54 Aligned_cols=21 Identities=14% Similarity=0.376 Sum_probs=19.5
Q ss_pred EEEEcCCCchHHHHHHHHHHH
Q 040354 54 LGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 54 i~I~G~~GiGKTtLa~~~~~~ 74 (172)
|.|.|.+|+|||||.+.+++.
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGG 22 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 789999999999999999876
No 419
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.25 E-value=0.0026 Score=49.93 Aligned_cols=82 Identities=16% Similarity=0.148 Sum_probs=53.6
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhccccC-c-----------------------Ccc-cHHHHHHHhCCCeeEEEEecC
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKITRRFEE-F-----------------------PNI-GLNFQSKRLTRKKLLIVFDDV 106 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~-~-----------------------~~~-~~~~~~~~l~~~~~LlvlDdv 106 (172)
..+.|+|..|+||||+++.+...+...... . ... ..+.++..++.++-.+++.++
T Consensus 145 ~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGEi 224 (323)
T PRK13833 145 LNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGEV 224 (323)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEeec
Confidence 578899999999999999998875211000 0 111 456777888888889999999
Q ss_pred CCHHhHHHHHhhccCCCCCcEEEEEeCChh
Q 040354 107 HHPRQIDCLIECLDWFASASRIIIISRDKQ 136 (172)
Q Consensus 107 ~~~~~~~~l~~~~~~~~~~s~iiiTtr~~~ 136 (172)
-+.+.+..+. .......| .+-|.+-.+
T Consensus 225 Rg~ea~~~l~-a~~tGh~G--~itTiHA~s 251 (323)
T PRK13833 225 RDGAALTLLK-AWNTGHPG--GVTTIHSNT 251 (323)
T ss_pred CCHHHHHHHH-HHcCCCCc--eEEEECCCC
Confidence 8777666433 43322233 455555443
No 420
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.25 E-value=0.00032 Score=48.64 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=20.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHHh
Q 040354 54 LGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 54 i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
|.|+|++|+||||+|+.+.....
T Consensus 2 i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999987753
No 421
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=97.25 E-value=0.0019 Score=55.32 Aligned_cols=48 Identities=17% Similarity=0.186 Sum_probs=37.6
Q ss_pred CCccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHH
Q 040354 26 NNHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 26 ~~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
-+.++|....+..+.+.+..-... ...|.|+|.+|+||+++|+.+++.
T Consensus 324 ~~~l~g~s~~~~~~~~~~~~~a~~-~~pvli~Ge~GtGK~~~A~~ih~~ 371 (638)
T PRK11388 324 FDHMPQDSPQMRRLIHFGRQAAKS-SFPVLLCGEEGVGKALLAQAIHNE 371 (638)
T ss_pred ccceEECCHHHHHHHHHHHHHhCc-CCCEEEECCCCcCHHHHHHHHHHh
Confidence 356889988888887766632222 356889999999999999999987
No 422
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.24 E-value=0.002 Score=49.48 Aligned_cols=23 Identities=30% Similarity=0.166 Sum_probs=20.9
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|+.|+|||||++.++..
T Consensus 34 e~~~I~G~nGsGKSTLl~~l~Gl 56 (277)
T PRK13642 34 EWVSIIGQNGSGKSTTARLIDGL 56 (277)
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 58999999999999999988754
No 423
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.24 E-value=0.00022 Score=50.13 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=19.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHH
Q 040354 54 LGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 54 i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
+.|+|++|+||||+|+.+....
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999998873
No 424
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=97.24 E-value=0.0014 Score=52.10 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=21.2
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|++|+|||||++.++.-
T Consensus 33 e~~~llGpsGsGKSTLLr~IaGl 55 (351)
T PRK11432 33 TMVTLLGPSGCGKTTVLRLVAGL 55 (351)
T ss_pred CEEEEECCCCCcHHHHHHHHHCC
Confidence 58999999999999999999865
No 425
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.0013 Score=52.68 Aligned_cols=42 Identities=31% Similarity=0.418 Sum_probs=31.0
Q ss_pred HHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhcc
Q 040354 36 TEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITRR 78 (172)
Q Consensus 36 ~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 78 (172)
..++...|..+--. -.++.|-|.||||||||..+++.++..+
T Consensus 79 ~~EldRVLGGG~V~-Gs~iLIgGdPGIGKSTLLLQva~~lA~~ 120 (456)
T COG1066 79 IEELDRVLGGGLVP-GSVILIGGDPGIGKSTLLLQVAARLAKR 120 (456)
T ss_pred hHHHHhhhcCCccc-ccEEEEccCCCCCHHHHHHHHHHHHHhc
Confidence 45555555543322 4788999999999999999999986544
No 426
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.24 E-value=0.0069 Score=46.38 Aligned_cols=133 Identities=11% Similarity=0.159 Sum_probs=83.6
Q ss_pred ccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhc-c----------ccCc--------------
Q 040354 28 HLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITR-R----------FEEF-------------- 82 (172)
Q Consensus 28 ~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~-~----------f~~~-------------- 82 (172)
.+.++++....+...... ++ .+-+.+||++|.||-|.+..+.+++-+ . |-..
T Consensus 14 ~l~~~~e~~~~Lksl~~~--~d-~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~y 90 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSST--GD-FPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNY 90 (351)
T ss_pred hcccHHHHHHHHHHhccc--CC-CCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccc
Confidence 355666666666655542 22 678899999999999999999888433 1 1111
Q ss_pred ------Ccc-------cHHHHHHHhCCC--------ee-EEEEecCCCH--HhHHHHHhhccCCCCCcEEEEEeCCh-hH
Q 040354 83 ------PNI-------GLNFQSKRLTRK--------KL-LIVFDDVHHP--RQIDCLIECLDWFASASRIIIISRDK-QA 137 (172)
Q Consensus 83 ------~~~-------~~~~~~~~l~~~--------~~-LlvlDdv~~~--~~~~~l~~~~~~~~~~s~iiiTtr~~-~~ 137 (172)
+|. ..+.+++..+.+ .+ ++|+-.+++. +....+........+.+|+|+..... .+
T Consensus 91 HlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~cns~Sri 170 (351)
T KOG2035|consen 91 HLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLILVCNSTSRI 170 (351)
T ss_pred eEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEEEecCcccc
Confidence 111 455555554432 23 6677777743 45667777777777888888765432 22
Q ss_pred HHhcC-CCceEEcCCCCHHHHHHHHhh
Q 040354 138 LISCG-VNKIYQMQELVHADALKLFSE 163 (172)
Q Consensus 138 ~~~~~-~~~~~~l~~l~~~~~~~lf~~ 163 (172)
...+. ..-.++++..+++|....+.+
T Consensus 171 IepIrSRCl~iRvpaps~eeI~~vl~~ 197 (351)
T KOG2035|consen 171 IEPIRSRCLFIRVPAPSDEEITSVLSK 197 (351)
T ss_pred hhHHhhheeEEeCCCCCHHHHHHHHHH
Confidence 22221 223578999999998877654
No 427
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=97.24 E-value=0.00031 Score=50.54 Aligned_cols=30 Identities=20% Similarity=0.348 Sum_probs=26.1
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhcccc
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKITRRFE 80 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~ 80 (172)
.+++.|+|++|+|||||+..++.+....|.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~ 31 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFG 31 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccc
Confidence 478999999999999999999998666663
No 428
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.24 E-value=0.0011 Score=50.82 Aligned_cols=23 Identities=13% Similarity=0.273 Sum_probs=20.9
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
+.+.++|++|+|||++++.....
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~ 56 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSS 56 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHC
T ss_pred CcEEEECCCCCchhHHHHhhhcc
Confidence 67899999999999999998876
No 429
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=97.24 E-value=0.00084 Score=56.57 Aligned_cols=49 Identities=18% Similarity=0.158 Sum_probs=38.4
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
+..+.|.+..+.|.++....... ..+|.|+|++|+||||+|+.+...+.
T Consensus 369 P~~f~rpeV~~iL~~~~~~r~~~-g~~Ivl~Gl~GSGKSTia~~La~~L~ 417 (568)
T PRK05537 369 PEWFSFPEVVAELRRTYPPRHKQ-GFTVFFTGLSGAGKSTIAKALMVKLM 417 (568)
T ss_pred ChhhcHHHHHHHHHHHhccccCC-CeEEEEECCCCChHHHHHHHHHHHhh
Confidence 44677887788777776644444 56899999999999999999998754
No 430
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=97.24 E-value=0.0017 Score=51.67 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=21.2
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|++|+|||||.+.++.-
T Consensus 31 e~~~llG~sGsGKSTLLr~iaGl 53 (356)
T PRK11650 31 EFIVLVGPSGCGKSTLLRMVAGL 53 (356)
T ss_pred CEEEEECCCCCcHHHHHHHHHCC
Confidence 58999999999999999999875
No 431
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.23 E-value=0.00029 Score=51.42 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=22.6
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
..+++|+|++|+|||||++.++...
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998874
No 432
>PRK13409 putative ATPase RIL; Provisional
Probab=97.23 E-value=0.0017 Score=55.00 Aligned_cols=23 Identities=35% Similarity=0.453 Sum_probs=21.1
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|+.|+|||||++.++..
T Consensus 366 eiv~l~G~NGsGKSTLlk~L~Gl 388 (590)
T PRK13409 366 EVIGIVGPNGIGKTTFAKLLAGV 388 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999865
No 433
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.22 E-value=0.0023 Score=53.68 Aligned_cols=23 Identities=35% Similarity=0.362 Sum_probs=21.3
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
..++|+|+.|+|||||++.++..
T Consensus 345 ~~~~ivG~sGsGKSTL~~ll~g~ 367 (544)
T TIGR01842 345 EALAIIGPSGSGKSTLARLIVGI 367 (544)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999998875
No 434
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.22 E-value=0.00032 Score=50.73 Aligned_cols=25 Identities=28% Similarity=0.155 Sum_probs=22.8
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
..++.|+|++|+|||||++.+....
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcC
Confidence 5789999999999999999998864
No 435
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.22 E-value=0.0015 Score=51.50 Aligned_cols=82 Identities=16% Similarity=0.167 Sum_probs=54.4
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhcc-----------ccC--cC---------------cc-cHHHHHHHhCCCeeEE
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKITRR-----------FEE--FP---------------NI-GLNFQSKRLTRKKLLI 101 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~-----------f~~--~~---------------~~-~~~~~~~~l~~~~~Ll 101 (172)
...+.|+|+.|+||||+++.+...+... +.. .+ .+ ..+.++..++.++=.+
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~I 239 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDRI 239 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCeE
Confidence 4789999999999999999998874321 100 00 11 4567788888888899
Q ss_pred EEecCCCHHhHHHHHhhccCCCCCcEEEEEeCCh
Q 040354 102 VFDDVHHPRQIDCLIECLDWFASASRIIIISRDK 135 (172)
Q Consensus 102 vlDdv~~~~~~~~l~~~~~~~~~~s~iiiTtr~~ 135 (172)
|++++-+.+.+..+ ........| ++-|.+-.
T Consensus 240 ivGEiR~~ea~~~l-~a~~tGh~G--~~tTiHa~ 270 (332)
T PRK13900 240 IVGELRGAEAFSFL-RAINTGHPG--SISTLHAD 270 (332)
T ss_pred EEEecCCHHHHHHH-HHHHcCCCc--EEEEEecC
Confidence 99999887777643 344333334 34444433
No 436
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=97.22 E-value=0.0089 Score=49.04 Aligned_cols=47 Identities=23% Similarity=0.277 Sum_probs=35.2
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHH
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
..++|.......+.+.+...... ...+.|.|.+|+||+++|+.+...
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a~~-~~~vli~Ge~GtGK~~~A~~ih~~ 180 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLSRS-DITVLINGESGTGKELVARALHRH 180 (463)
T ss_pred cceeecCHHHHHHHHHHHHHhCc-CCeEEEECCCCCCHHHHHHHHHHh
Confidence 35788777777776666533222 356789999999999999999886
No 437
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=97.21 E-value=0.0025 Score=55.01 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=21.1
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
..++|+|+.|+|||||++.++.-
T Consensus 480 e~vaIvG~sGsGKSTLlklL~gl 502 (686)
T TIGR03797 480 EFVAIVGPSGSGKSTLLRLLLGF 502 (686)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999998875
No 438
>CHL00206 ycf2 Ycf2; Provisional
Probab=97.20 E-value=0.0032 Score=59.00 Aligned_cols=24 Identities=13% Similarity=0.077 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
++-|.++|++|+|||.||++++.+
T Consensus 1630 PKGILLiGPPGTGKTlLAKALA~e 1653 (2281)
T CHL00206 1630 SRGILVIGSIGTGRSYLVKYLATN 1653 (2281)
T ss_pred CCceEEECCCCCCHHHHHHHHHHh
Confidence 578999999999999999999987
No 439
>PRK13948 shikimate kinase; Provisional
Probab=97.19 E-value=0.00039 Score=50.13 Aligned_cols=29 Identities=17% Similarity=0.242 Sum_probs=24.7
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhccc
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKITRRF 79 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f 79 (172)
.+.|.+.|+.|+||||+++.+...+...|
T Consensus 10 ~~~I~LiG~~GsGKSTvg~~La~~lg~~~ 38 (182)
T PRK13948 10 VTWVALAGFMGTGKSRIGWELSRALMLHF 38 (182)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHcCCCE
Confidence 57899999999999999999998754443
No 440
>PLN02200 adenylate kinase family protein
Probab=97.19 E-value=0.00041 Score=51.99 Aligned_cols=24 Identities=21% Similarity=0.044 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
+.++.|.|++|+||||+|+.++..
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~ 66 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVET 66 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 578899999999999999999876
No 441
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=97.19 E-value=0.003 Score=44.55 Aligned_cols=97 Identities=20% Similarity=0.249 Sum_probs=54.8
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHh-cc----------ccCc---Cc---------c-----cHHHHHHHhC----CCee
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKIT-RR----------FEEF---PN---------I-----GLNFQSKRLT----RKKL 99 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~~-~~----------f~~~---~~---------~-----~~~~~~~~l~----~~~~ 99 (172)
+...|+|+.|.|||++++.+.--.. .+ .... .+ + ....+...+. +++-
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~lS~G~~~~~~la~~L~~~~~~~~~ 101 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAELIFTRLQLSGGEKELSALALILALASLKPRP 101 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEEEEehheeeccccHHHHHHHHHHHHhcCCCCCC
Confidence 5899999999999999988654411 11 1110 11 1 1222333332 2678
Q ss_pred EEEEecCC---CHHhHHHHHhhccCC-CCCcEEEEEeCChhHHHhcCCCceEEcC
Q 040354 100 LIVFDDVH---HPRQIDCLIECLDWF-ASASRIIIISRDKQALISCGVNKIYQMQ 150 (172)
Q Consensus 100 LlvlDdv~---~~~~~~~l~~~~~~~-~~~s~iiiTtr~~~~~~~~~~~~~~~l~ 150 (172)
++++|+.. +...-..+...+... ..++.+|++|++..+.... ++.+.+.
T Consensus 102 llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~~~--d~~~~l~ 154 (162)
T cd03227 102 LYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAELA--DKLIHIK 154 (162)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhh--hhEEEEE
Confidence 99999995 332222222222111 1267899999998877653 4445443
No 442
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.19 E-value=0.00032 Score=50.61 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=21.4
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
..+.|.|++|+|||||++.+....
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999997763
No 443
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=97.18 E-value=0.00043 Score=50.53 Aligned_cols=25 Identities=28% Similarity=0.264 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
..++.|.|.+|+||||+|+.+....
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4789999999999999999998873
No 444
>PF13245 AAA_19: Part of AAA domain
Probab=97.18 E-value=0.00045 Score=42.51 Aligned_cols=24 Identities=21% Similarity=0.171 Sum_probs=18.1
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++.|.|++|+|||+++......
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 367888999999999665554443
No 445
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=97.18 E-value=0.0017 Score=51.69 Aligned_cols=23 Identities=22% Similarity=0.177 Sum_probs=21.3
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|++|+|||||.+.++.-
T Consensus 31 e~~~l~GpsGsGKSTLLr~iaGl 53 (353)
T TIGR03265 31 EFVCLLGPSGCGKTTLLRIIAGL 53 (353)
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 58999999999999999999875
No 446
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.18 E-value=0.0023 Score=53.33 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=21.3
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|+.|+|||||++.++..
T Consensus 51 EivgIiGpNGSGKSTLLkiLaGL 73 (549)
T PRK13545 51 EIVGIIGLNGSGKSTLSNLIAGV 73 (549)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 58999999999999999998875
No 447
>PRK14527 adenylate kinase; Provisional
Probab=97.18 E-value=0.0004 Score=50.27 Aligned_cols=24 Identities=21% Similarity=0.043 Sum_probs=21.8
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
..++.+.|++|+||||+|+.++.+
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~ 29 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQE 29 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999998865
No 448
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=97.17 E-value=0.0019 Score=51.58 Aligned_cols=23 Identities=30% Similarity=0.291 Sum_probs=21.2
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|++|+|||||.+.++.-
T Consensus 32 e~~~llGpsGsGKSTLLr~iaGl 54 (362)
T TIGR03258 32 ELLALIGKSGCGKTTLLRAIAGF 54 (362)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999875
No 449
>PRK14529 adenylate kinase; Provisional
Probab=97.17 E-value=0.0043 Score=46.18 Aligned_cols=66 Identities=21% Similarity=0.151 Sum_probs=41.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhcc-ccCc----------------------------CcccHHHHHHHhCC-CeeEEE
Q 040354 53 KLGISGSGDIGKITIAGAIFNKITRR-FEEF----------------------------PNIGLNFQSKRLTR-KKLLIV 102 (172)
Q Consensus 53 ~i~I~G~~GiGKTtLa~~~~~~~~~~-f~~~----------------------------~~~~~~~~~~~l~~-~~~Llv 102 (172)
.+.|.|++|+||||+++.+...+.-. ++.. .++....+.+.+.. ...-+|
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~~~~g~i 81 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQDGKNGWL 81 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHHhccCcchHHHHHHHHHHHHhccCCCcEE
Confidence 37889999999999999998874322 1111 11134445555543 245689
Q ss_pred EecCC-CHHhHHHHHhh
Q 040354 103 FDDVH-HPRQIDCLIEC 118 (172)
Q Consensus 103 lDdv~-~~~~~~~l~~~ 118 (172)
||+.- +..|...|...
T Consensus 82 LDGfPRt~~Qa~~l~~~ 98 (223)
T PRK14529 82 LDGFPRNKVQAEKLWEA 98 (223)
T ss_pred EeCCCCCHHHHHHHHHH
Confidence 99994 55665554433
No 450
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.16 E-value=0.00041 Score=48.85 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=17.7
Q ss_pred EEEEcCCCchHHHHHHHHHHH
Q 040354 54 LGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 54 i~I~G~~GiGKTtLa~~~~~~ 74 (172)
|.|+|.+|+|||||+..+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999876
No 451
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=97.16 E-value=0.00052 Score=48.89 Aligned_cols=27 Identities=30% Similarity=0.267 Sum_probs=23.8
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhc
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKITR 77 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~~ 77 (172)
..++.++|.+|+||||+|.++...+..
T Consensus 23 ~~viW~TGLSGsGKSTiA~ale~~L~~ 49 (197)
T COG0529 23 GAVIWFTGLSGSGKSTIANALEEKLFA 49 (197)
T ss_pred CeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 579999999999999999999887544
No 452
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.16 E-value=0.0074 Score=45.11 Aligned_cols=80 Identities=15% Similarity=0.250 Sum_probs=50.8
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhc---cccCc------------------C--------cc-----cHHHHHHHh-CC
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKITR---RFEEF------------------P--------NI-----GLNFQSKRL-TR 96 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~~~---~f~~~------------------~--------~~-----~~~~~~~~l-~~ 96 (172)
....|.|++|+|||||.+.++.-+.. +|... + +. -..-+-... ..
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm 217 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSM 217 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhc
Confidence 45789999999999999998876433 34333 0 00 001111111 12
Q ss_pred CeeEEEEecCCCHHhHHHHHhhccCCCCCcEEEEEeCC
Q 040354 97 KKLLIVFDDVHHPRQIDCLIECLDWFASASRIIIISRD 134 (172)
Q Consensus 97 ~~~LlvlDdv~~~~~~~~l~~~~~~~~~~s~iiiTtr~ 134 (172)
.+-++|+|++...++...+...+. .|-+++.|.+-
T Consensus 218 ~PEViIvDEIGt~~d~~A~~ta~~---~GVkli~TaHG 252 (308)
T COG3854 218 SPEVIIVDEIGTEEDALAILTALH---AGVKLITTAHG 252 (308)
T ss_pred CCcEEEEeccccHHHHHHHHHHHh---cCcEEEEeecc
Confidence 467999999987777666665554 67778777764
No 453
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=97.15 E-value=0.00073 Score=53.15 Aligned_cols=51 Identities=24% Similarity=0.244 Sum_probs=39.7
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITRRFEEF 82 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~ 82 (172)
..++|+++....+...+..+ +.+.+.|++|+|||+||+.++..+...|...
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~-----~~vll~G~PG~gKT~la~~lA~~l~~~~~~i 74 (329)
T COG0714 24 KVVVGDEEVIELALLALLAG-----GHVLLEGPPGVGKTLLARALARALGLPFVRI 74 (329)
T ss_pred CeeeccHHHHHHHHHHHHcC-----CCEEEECCCCccHHHHHHHHHHHhCCCeEEE
Confidence 44889888877776655543 5789999999999999999999876555444
No 454
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=97.15 E-value=0.0022 Score=53.43 Aligned_cols=23 Identities=22% Similarity=0.176 Sum_probs=21.0
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|+.|+|||||++.++..
T Consensus 38 e~~~liG~NGsGKSTLl~~l~Gl 60 (510)
T PRK15439 38 EVHALLGGNGAGKSTLMKIIAGI 60 (510)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998764
No 455
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.15 E-value=0.00039 Score=48.41 Aligned_cols=23 Identities=35% Similarity=0.417 Sum_probs=20.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 040354 53 KLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 53 ~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
++.|+|.+|+||||+|+.+....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998875
No 456
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.14 E-value=0.0004 Score=50.06 Aligned_cols=21 Identities=29% Similarity=0.227 Sum_probs=19.6
Q ss_pred EEEEcCCCchHHHHHHHHHHH
Q 040354 54 LGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 54 i~I~G~~GiGKTtLa~~~~~~ 74 (172)
|.|.|++|+||||+|+.++..
T Consensus 2 I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999886
No 457
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.14 E-value=0.00092 Score=49.30 Aligned_cols=37 Identities=22% Similarity=0.229 Sum_probs=27.0
Q ss_pred HHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 38 EIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 38 ~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
.|..+|..+-.. ..++.|+|++|+||||+|.+++...
T Consensus 7 ~LD~~l~GGi~~-g~i~~i~G~~GsGKT~l~~~~a~~~ 43 (218)
T cd01394 7 GLDELLGGGVER-GTVTQVYGPPGTGKTNIAIQLAVET 43 (218)
T ss_pred HHHHHhcCCccC-CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 344455433222 5789999999999999999988763
No 458
>PRK14532 adenylate kinase; Provisional
Probab=97.14 E-value=0.00041 Score=50.00 Aligned_cols=23 Identities=26% Similarity=0.202 Sum_probs=20.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 040354 53 KLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 53 ~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
.+.+.|++|+||||+|+.++...
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 37889999999999999998763
No 459
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.13 E-value=0.0025 Score=48.60 Aligned_cols=46 Identities=20% Similarity=0.143 Sum_probs=30.1
Q ss_pred CccccccchHHHHHHHhc-CCCCCCeeEEEEEcCCCchHHHHHHHHHHH
Q 040354 27 NHLVGIESRTEEIESVLG-VGSTMNICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~-~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
+.|+.|+...-.-++-+. +-.. -.++++.|+.|.||||+.+.+...
T Consensus 27 ~~~~~~k~~~~~AVqdisf~IP~--G~ivgflGaNGAGKSTtLKmLTGl 73 (325)
T COG4586 27 NHFFHRKERSIEAVQDISFEIPK--GEIVGFLGANGAGKSTTLKMLTGL 73 (325)
T ss_pred HhhcCchhhhhhhhheeeeecCC--CcEEEEEcCCCCcchhhHHHHhCc
Confidence 456666653333333232 2222 368999999999999999988765
No 460
>PRK14531 adenylate kinase; Provisional
Probab=97.13 E-value=0.00047 Score=49.59 Aligned_cols=24 Identities=25% Similarity=0.152 Sum_probs=21.4
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
..+.|.|++|+||||+++.+...+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998874
No 461
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=97.13 E-value=0.003 Score=47.28 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=21.1
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
..++|.|..|+|||||.+.+..-
T Consensus 54 e~vGiiG~NGaGKSTLlkliaGi 76 (249)
T COG1134 54 ERVGIIGHNGAGKSTLLKLIAGI 76 (249)
T ss_pred CEEEEECCCCCcHHHHHHHHhCc
Confidence 58999999999999999998875
No 462
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.13 E-value=0.0033 Score=49.82 Aligned_cols=66 Identities=14% Similarity=0.198 Sum_probs=46.9
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhcc---------ccCc---C---------------cc-cHHHHHHHhCCCeeEEE
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKITRR---------FEEF---P---------------NI-GLNFQSKRLTRKKLLIV 102 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~---------f~~~---~---------------~~-~~~~~~~~l~~~~~Llv 102 (172)
...+.|.|+.|+||||+++.++..+... ++.. . .. ..+.++..++..+=.|+
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD~Ii 241 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDRIL 241 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCCeEE
Confidence 4789999999999999999998863221 0000 0 11 34566777888888889
Q ss_pred EecCCCHHhHHHHH
Q 040354 103 FDDVHHPRQIDCLI 116 (172)
Q Consensus 103 lDdv~~~~~~~~l~ 116 (172)
+.++-+.+.|..+.
T Consensus 242 vGEiR~~ea~~~l~ 255 (344)
T PRK13851 242 LGEMRDDAAWAYLS 255 (344)
T ss_pred EEeeCcHHHHHHHH
Confidence 99998777777554
No 463
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.13 E-value=0.00047 Score=53.35 Aligned_cols=24 Identities=25% Similarity=0.046 Sum_probs=21.6
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
.++.+.|++|+||||+|+.+....
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 678899999999999999988764
No 464
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.13 E-value=0.001 Score=52.15 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=23.1
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
..++.++|++|+||||++..++..+.
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~ 139 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYK 139 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 57999999999999999999888743
No 465
>PLN03073 ABC transporter F family; Provisional
Probab=97.12 E-value=0.0037 Score=54.19 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=21.0
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|+.|+|||||++.++..
T Consensus 536 e~i~LvG~NGsGKSTLLk~L~Gl 558 (718)
T PLN03073 536 SRIAMVGPNGIGKSTILKLISGE 558 (718)
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 58999999999999999998865
No 466
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.12 E-value=0.017 Score=44.63 Aligned_cols=123 Identities=8% Similarity=0.010 Sum_probs=74.7
Q ss_pred hHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHH-hcc------------ccCc-------C-c-ccHHHHHH
Q 040354 35 RTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKI-TRR------------FEEF-------P-N-IGLNFQSK 92 (172)
Q Consensus 35 ~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~-~~~------------f~~~-------~-~-~~~~~~~~ 92 (172)
..+.+...+..+.- ...+.++|+.|+||+++|..++..+ +.. .+.. . . +..+.++.
T Consensus 5 ~~~~L~~~i~~~rl--~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~ 82 (290)
T PRK05917 5 AWEALIQRVRDQKV--PSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRA 82 (290)
T ss_pred HHHHHHHHHHcCCc--CeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHH
Confidence 34556666665443 4788999999999999999988873 321 0000 1 1 22333332
Q ss_pred ---HhC-----CCeeEEEEecCC--CHHhHHHHHhhccCCCCCcEEEEEeCCh-hHHHhc-CCCceEEcCCC-----CHH
Q 040354 93 ---RLT-----RKKLLIVFDDVH--HPRQIDCLIECLDWFASASRIIIISRDK-QALISC-GVNKIYQMQEL-----VHA 155 (172)
Q Consensus 93 ---~l~-----~~~~LlvlDdv~--~~~~~~~l~~~~~~~~~~s~iiiTtr~~-~~~~~~-~~~~~~~l~~l-----~~~ 155 (172)
.+. +..-++|+|+++ +.+.++.++..+..-.+++.+|++|.+. .+...+ .....+.+.++ +++
T Consensus 83 l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~~~~~~~~~~~i~~~ 162 (290)
T PRK05917 83 IKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIHIPMEEKTLVSKE 162 (290)
T ss_pred HHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcceEEEccchhccCCCHH
Confidence 221 344588999997 4567899998887766677766666653 343332 33445666644 445
Q ss_pred HHHH
Q 040354 156 DALK 159 (172)
Q Consensus 156 ~~~~ 159 (172)
++..
T Consensus 163 ~~~~ 166 (290)
T PRK05917 163 DIAY 166 (290)
T ss_pred HHHH
Confidence 5544
No 467
>COG3910 Predicted ATPase [General function prediction only]
Probab=97.12 E-value=0.0054 Score=44.40 Aligned_cols=24 Identities=29% Similarity=0.176 Sum_probs=21.6
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.++..|+|..|+|||||...+...
T Consensus 37 apIT~i~GENGsGKSTLLEaiA~~ 60 (233)
T COG3910 37 APITFITGENGSGKSTLLEAIAAG 60 (233)
T ss_pred CceEEEEcCCCccHHHHHHHHHhh
Confidence 589999999999999999988764
No 468
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=97.12 E-value=0.0033 Score=53.84 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=21.1
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|+.|+|||||++.++..
T Consensus 346 e~~~l~G~NGsGKSTLlk~l~G~ 368 (635)
T PRK11147 346 DKIALIGPNGCGKTTLLKLMLGQ 368 (635)
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 58999999999999999999875
No 469
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.003 Score=45.57 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.7
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
..+.|.|+.|+|||||.+.++.-
T Consensus 29 e~~~i~G~NG~GKTtLLRilaGL 51 (209)
T COG4133 29 EALQITGPNGAGKTTLLRILAGL 51 (209)
T ss_pred CEEEEECCCCCcHHHHHHHHHcc
Confidence 57899999999999999998864
No 470
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.12 E-value=0.00039 Score=52.46 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 040354 53 KLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 53 ~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
.|.++|.+|+||||+|+.+....
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l 23 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKL 23 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 37899999999999999998764
No 471
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.11 E-value=0.0093 Score=49.06 Aligned_cols=67 Identities=12% Similarity=0.148 Sum_probs=51.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhccccCc--------------------C--cc-cHHHHHHHhCCCeeEEEEecCC
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKITRRFEEF--------------------P--NI-GLNFQSKRLTRKKLLIVFDDVH 107 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~--------------------~--~~-~~~~~~~~l~~~~~LlvlDdv~ 107 (172)
.+.+.++||.|+||||..-.+.+.+....... + .+ ....++..|+..+=+|++.++-
T Consensus 258 ~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~~~~gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGEIR 337 (500)
T COG2804 258 QGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEYQLPGINQVQVNPKIGLTFARALRAILRQDPDVIMVGEIR 337 (500)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeeeecCCcceeecccccCCCHHHHHHHHhccCCCeEEEeccC
Confidence 58999999999999999988888754433222 1 12 6788999999999999999998
Q ss_pred CHHhHHHHHh
Q 040354 108 HPRQIDCLIE 117 (172)
Q Consensus 108 ~~~~~~~l~~ 117 (172)
|.+.-+-...
T Consensus 338 D~ETAeiavq 347 (500)
T COG2804 338 DLETAEIAVQ 347 (500)
T ss_pred CHHHHHHHHH
Confidence 8876554443
No 472
>PRK13946 shikimate kinase; Provisional
Probab=97.11 E-value=0.00049 Score=49.56 Aligned_cols=27 Identities=15% Similarity=0.101 Sum_probs=23.6
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhc
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKITR 77 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~~ 77 (172)
.+.|.+.|++|+||||+++.+...+.-
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~ 36 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGL 36 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCC
Confidence 368999999999999999999987543
No 473
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.11 E-value=0.0005 Score=49.08 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=22.2
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
..|.|.|++|+||||+++.+.....
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcC
Confidence 5799999999999999999998743
No 474
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=97.11 E-value=0.0035 Score=51.87 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=21.2
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
..+.++|+.|+|||||.+.++.+
T Consensus 417 srvAlVGPNG~GKsTLlKl~~gd 439 (614)
T KOG0927|consen 417 SRVALVGPNGAGKSTLLKLITGD 439 (614)
T ss_pred cceeEecCCCCchhhhHHHHhhc
Confidence 68899999999999999988877
No 475
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=97.11 E-value=0.0037 Score=52.36 Aligned_cols=96 Identities=20% Similarity=0.353 Sum_probs=0.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhccccCc--------------------------------------------------
Q 040354 53 KLGISGSGDIGKITIAGAIFNKITRRFEEF-------------------------------------------------- 82 (172)
Q Consensus 53 ~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~-------------------------------------------------- 82 (172)
+++|.|+.|+|||||++.++......-...
T Consensus 347 ~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~ 426 (530)
T PRK15064 347 RLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLL 426 (530)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcC
Q ss_pred ----------Ccc-----cHHHHHHHhCCCeeEEEEecCC---CHHhHHHHHhhccCCCCCcEEEEEeCChhHHHhcCCC
Q 040354 83 ----------PNI-----GLNFQSKRLTRKKLLIVFDDVH---HPRQIDCLIECLDWFASASRIIIISRDKQALISCGVN 144 (172)
Q Consensus 83 ----------~~~-----~~~~~~~~l~~~~~LlvlDdv~---~~~~~~~l~~~~~~~~~~s~iiiTtr~~~~~~~~~~~ 144 (172)
.++ ..-.+...+..++-+|++|+.. |......+...+... +..||++|++...+..+ ++
T Consensus 427 l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~-~d 503 (530)
T PRK15064 427 FSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSL-AT 503 (530)
T ss_pred CChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHh-CC
Q ss_pred ceEEcCC
Q 040354 145 KIYQMQE 151 (172)
Q Consensus 145 ~~~~l~~ 151 (172)
+++.+..
T Consensus 504 ~i~~l~~ 510 (530)
T PRK15064 504 RIIEITP 510 (530)
T ss_pred EEEEEEC
No 476
>PRK13975 thymidylate kinase; Provisional
Probab=97.10 E-value=0.00057 Score=49.48 Aligned_cols=25 Identities=24% Similarity=0.210 Sum_probs=22.9
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
..|.|.|+.|+||||+++.+...+.
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999999865
No 477
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.09 E-value=0.0026 Score=50.86 Aligned_cols=25 Identities=16% Similarity=0.247 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
..++.++|++|+||||++..+....
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4799999999999999999998873
No 478
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=97.09 E-value=0.00051 Score=50.22 Aligned_cols=26 Identities=27% Similarity=0.272 Sum_probs=23.9
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
..+|+|-||-|+||||||+.+.+++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 47899999999999999999999865
No 479
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=97.09 E-value=0.0038 Score=50.52 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=21.0
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|+.|+|||||.+.+...
T Consensus 30 eiv~liGpNGaGKSTLLk~LaGl 52 (402)
T PRK09536 30 SLVGLVGPNGAGKTTLLRAINGT 52 (402)
T ss_pred CEEEEECCCCchHHHHHHHHhcC
Confidence 58999999999999999998864
No 480
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=97.09 E-value=0.00056 Score=48.24 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=20.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 040354 53 KLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 53 ~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
+|.|.|++|+||||+|+.+.+..
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999998763
No 481
>PRK04182 cytidylate kinase; Provisional
Probab=97.09 E-value=0.00055 Score=48.64 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=21.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 040354 53 KLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 53 ~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
+|.|.|++|+||||+|+.+...+
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999998874
No 482
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=97.08 E-value=0.00052 Score=52.21 Aligned_cols=30 Identities=13% Similarity=0.142 Sum_probs=25.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhcccc
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKITRRFE 80 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~ 80 (172)
+.++.++||+|+||||+++++..++...+.
T Consensus 19 p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ 48 (366)
T KOG1532|consen 19 PVIILVVGMAGSGKTTFMQRLNSHLHAKKT 48 (366)
T ss_pred CcEEEEEecCCCCchhHHHHHHHHHhhccC
Confidence 578888999999999999999988665544
No 483
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.07 E-value=0.00065 Score=49.49 Aligned_cols=25 Identities=32% Similarity=0.357 Sum_probs=22.8
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
..++.|+|++|+||||||+.+...+
T Consensus 24 ~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 24 GVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999998864
No 484
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.07 E-value=0.00043 Score=49.04 Aligned_cols=20 Identities=25% Similarity=0.484 Sum_probs=18.7
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 040354 53 KLGISGSGDIGKITIAGAIF 72 (172)
Q Consensus 53 ~i~I~G~~GiGKTtLa~~~~ 72 (172)
.+.|+|.||+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 68999999999999999987
No 485
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=97.07 E-value=0.0063 Score=51.43 Aligned_cols=82 Identities=10% Similarity=0.117 Sum_probs=55.7
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhcc---ccCc-----------------Cc--c-cHHHHHHHhCCCeeEEEEecCC
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKITRR---FEEF-----------------PN--I-GLNFQSKRLTRKKLLIVFDDVH 107 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~---f~~~-----------------~~--~-~~~~~~~~l~~~~~LlvlDdv~ 107 (172)
...+.|+|+.|+||||.+..+.+.+... +-.. .. . ....++..++..+=.|++.++-
T Consensus 316 ~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~~~~~~~q~~v~~~~g~~~~~~l~~~LR~dPDvI~vGEiR 395 (564)
T TIGR02538 316 QGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEINLPGINQVNVNPKIGLTFAAALRSFLRQDPDIIMVGEIR 395 (564)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCceecCCCceEEEeccccCCCHHHHHHHHhccCCCEEEeCCCC
Confidence 3799999999999999998887775321 1000 11 1 5678888899999999999999
Q ss_pred CHHhHHHHHhhccCCCCCcEEEEEeCCh
Q 040354 108 HPRQIDCLIECLDWFASASRIIIISRDK 135 (172)
Q Consensus 108 ~~~~~~~l~~~~~~~~~~s~iiiTtr~~ 135 (172)
+.+.......... .|-.|+-|-+..
T Consensus 396 d~eta~~a~~aa~---tGHlv~tTlHa~ 420 (564)
T TIGR02538 396 DLETAEIAIKAAQ---TGHLVLSTLHTN 420 (564)
T ss_pred CHHHHHHHHHHHH---cCCcEEEEeccC
Confidence 8877654443332 343355555543
No 486
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=97.06 E-value=0.0056 Score=45.92 Aligned_cols=23 Identities=22% Similarity=0.318 Sum_probs=20.4
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.-..|+|+.|+|||||++.+..+
T Consensus 58 e~W~I~G~NGsGKTTLL~ll~~~ 80 (257)
T COG1119 58 EHWAIVGPNGAGKTTLLSLLTGE 80 (257)
T ss_pred CcEEEECCCCCCHHHHHHHHhcc
Confidence 45789999999999999998876
No 487
>PRK10436 hypothetical protein; Provisional
Probab=97.06 E-value=0.0069 Score=49.89 Aligned_cols=66 Identities=11% Similarity=0.129 Sum_probs=48.4
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhccccCc--------------------Cc--c-cHHHHHHHhCCCeeEEEEecCC
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKITRRFEEF--------------------PN--I-GLNFQSKRLTRKKLLIVFDDVH 107 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~--------------------~~--~-~~~~~~~~l~~~~~LlvlDdv~ 107 (172)
...+.|+|+.|+||||.+..+...+...-... .+ . ....++..++..+=.|++.++-
T Consensus 218 ~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~~l~gi~Q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEIR 297 (462)
T PRK10436 218 QGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIPLAGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIR 297 (462)
T ss_pred CCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCccccCCCcceEeeCCccCcCHHHHHHHHhcCCCCEEEECCCC
Confidence 37999999999999999887777643220000 11 2 5778888899999999999998
Q ss_pred CHHhHHHHH
Q 040354 108 HPRQIDCLI 116 (172)
Q Consensus 108 ~~~~~~~l~ 116 (172)
+.+......
T Consensus 298 D~eta~~al 306 (462)
T PRK10436 298 DGETAEIAI 306 (462)
T ss_pred CHHHHHHHH
Confidence 887766433
No 488
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.06 E-value=0.0012 Score=51.95 Aligned_cols=39 Identities=23% Similarity=0.288 Sum_probs=28.2
Q ss_pred HHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 37 EEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 37 ~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
..+.+.+...... ..+|+|.|++|+|||||+..+...+.
T Consensus 43 ~~l~~~~~~~~~~-~~~igi~G~~GaGKSTl~~~l~~~l~ 81 (332)
T PRK09435 43 QELLDALLPHTGN-ALRIGITGVPGVGKSTFIEALGMHLI 81 (332)
T ss_pred HHHHHHHhhcCCC-cEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3444444332233 68999999999999999998877744
No 489
>PLN02318 phosphoribulokinase/uridine kinase
Probab=97.05 E-value=0.00092 Score=56.20 Aligned_cols=25 Identities=24% Similarity=0.505 Sum_probs=23.0
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
+.+|+|.|++|+||||||+.+...+
T Consensus 65 riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 65 IILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred eEEEEEECCCCCcHHHHHHHHHhhC
Confidence 7899999999999999999998764
No 490
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.05 E-value=0.0017 Score=50.84 Aligned_cols=42 Identities=17% Similarity=0.143 Sum_probs=31.3
Q ss_pred cchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhccc
Q 040354 33 ESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITRRF 79 (172)
Q Consensus 33 ~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f 79 (172)
.+....+..++.. .+.+.|.|++|+||||+|+.++..+...|
T Consensus 51 ~~~~~~vl~~l~~-----~~~ilL~G~pGtGKTtla~~lA~~l~~~~ 92 (327)
T TIGR01650 51 KATTKAICAGFAY-----DRRVMVQGYHGTGKSTHIEQIAARLNWPC 92 (327)
T ss_pred HHHHHHHHHHHhc-----CCcEEEEeCCCChHHHHHHHHHHHHCCCe
Confidence 3345556666643 25799999999999999999999865443
No 491
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.04 E-value=0.00064 Score=44.63 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=19.3
Q ss_pred eEEEEEcCCCchHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIF 72 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~ 72 (172)
..+.|.|++|+|||||+..+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 689999999999999998875
No 492
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.04 E-value=0.001 Score=46.94 Aligned_cols=35 Identities=20% Similarity=0.323 Sum_probs=29.1
Q ss_pred chHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHH
Q 040354 34 SRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 34 ~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
..++.|.+++.. +++.+.|++|+|||||+..+...
T Consensus 24 ~g~~~l~~~l~~------k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 24 EGIEELKELLKG------KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTHHHHHHHHTT------SEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCHHHHHHHhcC------CEEEEECCCCCCHHHHHHHHHhh
Confidence 457777777763 58999999999999999999876
No 493
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.04 E-value=0.00079 Score=39.67 Aligned_cols=22 Identities=32% Similarity=0.284 Sum_probs=19.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 040354 53 KLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 53 ~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
+..|+|+.|+|||||.-++.--
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999998777654
No 494
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=97.03 E-value=0.0031 Score=45.66 Aligned_cols=32 Identities=13% Similarity=0.381 Sum_probs=27.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhccccCc
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKITRRFEEF 82 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~ 82 (172)
...+.+-|++|+|||+|..+.+..+++.|...
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~a 44 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIA 44 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeE
Confidence 36899999999999999999999987776543
No 495
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.03 E-value=0.0011 Score=51.04 Aligned_cols=40 Identities=23% Similarity=0.251 Sum_probs=29.7
Q ss_pred HHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhc
Q 040354 37 EEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITR 77 (172)
Q Consensus 37 ~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~ 77 (172)
.++...+....+. ..+++|+|.||+|||||...+...+.+
T Consensus 38 ~~ll~~l~p~tG~-a~viGITG~PGaGKSTli~~L~~~l~~ 77 (323)
T COG1703 38 RELLRALYPRTGN-AHVIGITGVPGAGKSTLIEALGRELRE 77 (323)
T ss_pred HHHHHHHhhcCCC-CcEEEecCCCCCchHHHHHHHHHHHHH
Confidence 3455545444433 689999999999999999988887543
No 496
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.03 E-value=0.00082 Score=49.42 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=18.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 040354 53 KLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 53 ~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
+..|+|++|+||||++..+...+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 68999999999998887777765
No 497
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=97.03 E-value=0.0081 Score=42.25 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=18.4
Q ss_pred EEEEcCCCchHHHHHHHHHHH
Q 040354 54 LGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 54 i~I~G~~GiGKTtLa~~~~~~ 74 (172)
+.|.|.+|+|||||...+...
T Consensus 1 i~i~G~~~vGKTsli~~~~~~ 21 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTN 21 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhC
Confidence 478999999999999988764
No 498
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=97.03 E-value=0.0041 Score=51.71 Aligned_cols=23 Identities=39% Similarity=0.442 Sum_probs=21.6
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|+|.+|+||||+|..+..-
T Consensus 36 E~lgIvGESGsGKSt~a~~i~gl 58 (539)
T COG1123 36 EILGIVGESGSGKSTLALALMGL 58 (539)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcc
Confidence 69999999999999999999876
No 499
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=97.03 E-value=0.00064 Score=47.73 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=21.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhc
Q 040354 53 KLGISGSGDIGKITIAGAIFNKITR 77 (172)
Q Consensus 53 ~i~I~G~~GiGKTtLa~~~~~~~~~ 77 (172)
++.|+|+.|+|||||+..+...++.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~ 25 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKA 25 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4789999999999999999998544
No 500
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.03 E-value=0.00072 Score=47.92 Aligned_cols=26 Identities=23% Similarity=0.235 Sum_probs=22.3
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhc
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKITR 77 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~~~ 77 (172)
..+.|+|++|+||||+++.+.....-
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~ 28 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGY 28 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 36888999999999999999987543
Done!