Query 040354
Match_columns 172
No_of_seqs 164 out of 1272
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 12:04:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040354.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040354hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 99.9 3.7E-25 1.2E-29 182.4 15.1 134 30-169 131-310 (549)
2 3sfz_A APAF-1, apoptotic pepti 99.9 9.8E-23 3.4E-27 179.8 12.6 136 24-167 121-301 (1249)
3 1vt4_I APAF-1 related killer D 99.8 2E-21 7E-26 167.3 10.0 129 27-164 128-310 (1221)
4 1z6t_A APAF-1, apoptotic prote 99.8 4.1E-21 1.4E-25 159.1 11.0 135 24-167 121-301 (591)
5 1njg_A DNA polymerase III subu 99.5 3E-13 1E-17 98.9 14.3 138 26-165 22-198 (250)
6 2chg_A Replication factor C sm 99.5 8.9E-13 3E-17 95.3 13.4 137 26-165 16-174 (226)
7 1w5s_A Origin recognition comp 99.5 3.2E-13 1.1E-17 106.8 10.0 140 24-164 19-227 (412)
8 2fna_A Conserved hypothetical 99.4 1.2E-12 4E-17 101.3 10.2 134 24-164 10-221 (357)
9 2qby_A CDC6 homolog 1, cell di 99.4 1.6E-12 5.5E-17 101.6 11.0 140 24-164 17-209 (386)
10 2v1u_A Cell division control p 99.4 4.1E-12 1.4E-16 99.4 11.6 139 24-164 16-213 (387)
11 2qby_B CDC6 homolog 3, cell di 99.4 1E-11 3.5E-16 97.3 13.5 137 26-164 19-209 (384)
12 2qen_A Walker-type ATPase; unk 99.4 2.4E-12 8.1E-17 99.5 9.4 135 24-164 9-215 (350)
13 1sxj_B Activator 1 37 kDa subu 99.3 1.3E-11 4.4E-16 94.5 11.8 135 27-164 21-178 (323)
14 1jbk_A CLPB protein; beta barr 99.3 4.5E-12 1.5E-16 89.5 8.5 131 26-161 21-194 (195)
15 1fnn_A CDC6P, cell division co 99.3 4.3E-11 1.5E-15 93.8 13.1 141 24-164 14-205 (389)
16 1iqp_A RFCS; clamp loader, ext 99.3 4.7E-11 1.6E-15 91.5 11.3 137 26-165 24-182 (327)
17 3h4m_A Proteasome-activating n 99.2 5.2E-11 1.8E-15 90.0 10.3 142 24-166 14-202 (285)
18 1jr3_A DNA polymerase III subu 99.2 6.5E-10 2.2E-14 86.7 15.6 136 27-164 16-190 (373)
19 2chq_A Replication factor C sm 99.2 1.8E-10 6.2E-15 87.9 11.6 137 26-165 16-174 (319)
20 3d8b_A Fidgetin-like protein 1 99.2 1.3E-10 4.5E-15 90.9 9.7 158 3-165 64-264 (357)
21 3syl_A Protein CBBX; photosynt 99.1 5.2E-10 1.8E-14 85.3 11.0 135 28-164 32-216 (309)
22 2qz4_A Paraplegin; AAA+, SPG7, 99.1 1.7E-09 5.8E-14 80.4 13.4 139 27-165 6-190 (262)
23 3pvs_A Replication-associated 99.1 3.5E-10 1.2E-14 91.0 10.2 135 26-165 25-178 (447)
24 3u61_B DNA polymerase accessor 99.1 3.8E-10 1.3E-14 86.8 10.0 128 26-158 25-171 (324)
25 1hqc_A RUVB; extended AAA-ATPa 99.1 5E-10 1.7E-14 85.9 10.2 139 26-165 11-181 (324)
26 3eie_A Vacuolar protein sortin 99.1 2E-09 6.8E-14 83.0 12.3 138 26-165 17-197 (322)
27 3pfi_A Holliday junction ATP-d 99.0 1.8E-09 6.1E-14 83.4 11.1 139 26-165 28-197 (338)
28 1d2n_A N-ethylmaleimide-sensit 99.0 1.8E-09 6.3E-14 81.1 10.8 138 26-163 32-210 (272)
29 3bos_A Putative DNA replicatio 99.0 2.5E-10 8.4E-15 83.6 5.8 135 27-165 28-187 (242)
30 1sxj_A Activator 1 95 kDa subu 99.0 3.3E-09 1.1E-13 86.8 12.7 138 26-165 38-222 (516)
31 3b9p_A CG5977-PA, isoform A; A 99.0 2.5E-09 8.5E-14 81.2 11.3 153 9-164 3-201 (297)
32 2qp9_X Vacuolar protein sortin 99.0 6.9E-09 2.3E-13 81.1 13.7 138 26-165 50-230 (355)
33 2z4s_A Chromosomal replication 99.0 1.4E-09 4.9E-14 87.3 9.9 115 51-165 130-276 (440)
34 1sxj_D Activator 1 41 kDa subu 99.0 4E-09 1.4E-13 81.6 11.7 138 25-165 35-205 (353)
35 3te6_A Regulatory protein SIR3 99.0 1.1E-09 3.6E-14 84.4 8.3 137 27-165 20-211 (318)
36 3cf0_A Transitional endoplasmi 99.0 6.6E-09 2.2E-13 79.4 12.3 138 27-165 15-199 (301)
37 1sxj_E Activator 1 40 kDa subu 99.0 7.4E-09 2.5E-13 80.3 12.5 136 27-165 14-206 (354)
38 1l8q_A Chromosomal replication 99.0 4.2E-09 1.4E-13 81.0 10.0 136 27-165 11-179 (324)
39 2zan_A Vacuolar protein sortin 98.9 1.4E-08 4.9E-13 81.6 12.9 140 26-165 133-314 (444)
40 3vfd_A Spastin; ATPase, microt 98.9 9.7E-09 3.3E-13 81.1 11.4 138 27-165 115-295 (389)
41 1xwi_A SKD1 protein; VPS4B, AA 98.9 2.5E-08 8.6E-13 76.9 13.1 137 27-165 12-192 (322)
42 3uk6_A RUVB-like 2; hexameric 98.9 1.2E-08 4E-13 79.6 11.0 51 26-77 43-96 (368)
43 3n70_A Transport activator; si 98.9 2.1E-09 7.3E-14 73.5 5.6 103 28-134 2-115 (145)
44 3hu3_A Transitional endoplasmi 98.9 8.8E-09 3E-13 83.7 10.0 138 27-165 204-385 (489)
45 1sxj_C Activator 1 40 kDa subu 98.9 3.2E-08 1.1E-12 76.6 12.2 135 27-164 25-181 (340)
46 2p65_A Hypothetical protein PF 98.9 3.4E-09 1.2E-13 74.4 6.0 48 26-76 21-68 (187)
47 4b4t_J 26S protease regulatory 98.8 6.5E-08 2.2E-12 76.5 13.2 137 27-164 148-331 (405)
48 1qvr_A CLPB protein; coiled co 98.8 8.8E-09 3E-13 88.9 8.3 132 27-163 170-343 (854)
49 1ofh_A ATP-dependent HSL prote 98.8 4.4E-08 1.5E-12 74.3 10.8 134 27-163 15-213 (310)
50 2r62_A Cell division protease 98.8 5.4E-09 1.8E-13 78.2 5.6 140 25-165 9-196 (268)
51 1a5t_A Delta prime, HOLB; zinc 98.8 3.4E-07 1.1E-11 70.9 15.6 132 32-165 7-180 (334)
52 1r6b_X CLPA protein; AAA+, N-t 98.8 1.3E-07 4.5E-12 80.5 14.0 134 27-164 186-361 (758)
53 4b4t_L 26S protease subunit RP 98.8 7.9E-08 2.7E-12 76.9 11.9 137 27-164 181-364 (437)
54 4b4t_H 26S protease regulatory 98.8 1.4E-07 4.7E-12 75.8 13.1 137 27-164 209-392 (467)
55 3pxg_A Negative regulator of g 98.8 4.2E-08 1.4E-12 79.3 10.2 132 27-165 180-338 (468)
56 2gno_A DNA polymerase III, gam 98.8 9.7E-08 3.3E-12 73.1 11.4 131 31-165 1-152 (305)
57 2bjv_A PSP operon transcriptio 98.7 9.1E-08 3.1E-12 71.4 10.8 48 27-75 6-53 (265)
58 3ec2_A DNA replication protein 98.7 5E-08 1.7E-12 68.7 8.1 45 32-76 19-63 (180)
59 3co5_A Putative two-component 98.7 3.4E-09 1.2E-13 72.3 2.0 105 27-133 4-114 (143)
60 1lv7_A FTSH; alpha/beta domain 98.7 9.1E-08 3.1E-12 71.1 9.9 139 26-164 11-194 (257)
61 3pxi_A Negative regulator of g 98.7 1.1E-07 3.7E-12 81.1 11.2 131 27-164 180-337 (758)
62 2ce7_A Cell division protein F 98.7 1.7E-07 5.9E-12 75.8 11.8 138 27-164 16-198 (476)
63 1ojl_A Transcriptional regulat 98.7 3.7E-07 1.3E-11 69.8 13.1 48 27-75 2-49 (304)
64 4b4t_M 26S protease regulatory 98.7 1E-07 3.5E-12 76.2 10.2 137 27-164 181-364 (434)
65 3t15_A Ribulose bisphosphate c 98.7 2E-07 6.8E-12 70.9 11.2 57 51-107 36-109 (293)
66 4b4t_K 26S protease regulatory 98.7 2.2E-07 7.4E-12 74.2 11.1 136 27-163 172-355 (428)
67 4b4t_I 26S protease regulatory 98.6 1.7E-07 5.8E-12 74.6 9.6 137 27-164 182-365 (437)
68 4fcw_A Chaperone protein CLPB; 98.6 1.1E-06 3.8E-11 66.7 13.8 49 27-75 17-71 (311)
69 3pxi_A Negative regulator of g 98.6 8.9E-07 3.1E-11 75.5 12.8 138 27-164 491-674 (758)
70 2kjq_A DNAA-related protein; s 98.5 3.4E-08 1.2E-12 67.9 2.3 80 51-134 36-124 (149)
71 2r44_A Uncharacterized protein 98.5 7.6E-07 2.6E-11 68.5 9.7 134 27-165 27-198 (331)
72 2w58_A DNAI, primosome compone 98.5 1.2E-07 4.2E-12 67.8 4.9 51 27-77 25-80 (202)
73 1in4_A RUVB, holliday junction 98.5 1.4E-06 4.7E-11 67.4 10.8 139 27-165 25-193 (334)
74 3m6a_A ATP-dependent protease 98.5 1.5E-06 5.1E-11 71.5 11.4 132 29-164 83-265 (543)
75 3cf2_A TER ATPase, transitiona 98.5 5.9E-07 2E-11 76.8 9.2 139 27-165 204-385 (806)
76 1um8_A ATP-dependent CLP prote 98.4 4.4E-06 1.5E-10 65.4 12.2 52 27-79 21-100 (376)
77 1r6b_X CLPA protein; AAA+, N-t 98.4 5.2E-06 1.8E-10 70.7 13.3 138 27-164 458-665 (758)
78 2dhr_A FTSH; AAA+ protein, hex 98.4 5.9E-06 2E-10 67.2 12.6 142 24-165 28-214 (499)
79 1ixz_A ATP-dependent metallopr 98.4 2.6E-06 8.8E-11 63.1 9.7 140 26-165 15-199 (254)
80 1tue_A Replication protein E1; 98.4 4.7E-07 1.6E-11 65.3 5.0 70 36-108 45-114 (212)
81 1ypw_A Transitional endoplasmi 98.3 1.6E-06 5.5E-11 74.4 8.9 137 27-164 204-384 (806)
82 1iy2_A ATP-dependent metallopr 98.3 4.8E-06 1.6E-10 62.5 10.4 141 25-165 38-223 (278)
83 3jvv_A Twitching mobility prot 98.3 5.8E-06 2E-10 64.6 9.6 85 52-139 124-235 (356)
84 2c9o_A RUVB-like 1; hexameric 98.2 1.2E-06 4.1E-11 70.5 5.8 80 27-107 37-136 (456)
85 2x8a_A Nuclear valosin-contain 98.2 1.7E-05 5.8E-10 59.7 11.4 138 27-165 10-191 (274)
86 1u0j_A DNA replication protein 98.2 2.4E-05 8.2E-10 58.6 11.3 119 39-164 93-250 (267)
87 2qgz_A Helicase loader, putati 98.2 1.7E-06 5.7E-11 66.3 4.9 42 35-76 136-177 (308)
88 1qvr_A CLPB protein; coiled co 98.1 2.6E-05 9E-10 67.4 11.9 48 28-75 559-612 (854)
89 3cf2_A TER ATPase, transitiona 98.0 7.5E-06 2.6E-10 70.0 6.8 138 27-164 477-660 (806)
90 1ypw_A Transitional endoplasmi 98.0 1.9E-06 6.6E-11 73.9 2.0 139 27-165 477-661 (806)
91 2eyu_A Twitching motility prot 98.0 3.9E-05 1.3E-09 57.3 8.5 85 51-138 25-136 (261)
92 4gp7_A Metallophosphoesterase; 97.9 3.2E-05 1.1E-09 53.9 7.5 20 51-70 9-28 (171)
93 3hws_A ATP-dependent CLP prote 97.8 1.8E-05 6.2E-10 61.6 5.2 52 28-80 16-80 (363)
94 1rz3_A Hypothetical protein rb 97.8 2E-05 6.9E-10 56.3 5.0 44 32-75 3-46 (201)
95 2ewv_A Twitching motility prot 97.8 0.00012 4E-09 57.5 9.6 84 51-137 136-246 (372)
96 1qhx_A CPT, protein (chloramph 97.7 1.8E-05 6E-10 55.2 3.3 25 52-76 4-28 (178)
97 2orw_A Thymidine kinase; TMTK, 97.7 3.2E-05 1.1E-09 54.7 4.4 82 52-136 4-114 (184)
98 1s96_A Guanylate kinase, GMP k 97.7 0.00037 1.3E-08 50.6 10.1 26 51-76 16-41 (219)
99 2vhj_A Ntpase P4, P4; non- hyd 97.7 5.2E-05 1.8E-09 58.3 5.5 55 52-107 124-192 (331)
100 3c8u_A Fructokinase; YP_612366 97.7 3.9E-05 1.3E-09 55.1 4.4 40 36-76 8-47 (208)
101 3sr0_A Adenylate kinase; phosp 97.7 0.00026 9.1E-09 50.9 8.5 86 53-139 2-119 (206)
102 3kb2_A SPBC2 prophage-derived 97.6 3.5E-05 1.2E-09 53.1 3.7 27 52-78 2-28 (173)
103 3tui_C Methionine import ATP-b 97.6 0.00013 4.6E-09 57.0 7.2 23 52-74 55-77 (366)
104 1vpl_A ABC transporter, ATP-bi 97.6 0.00014 4.7E-09 54.2 7.0 23 52-74 42-64 (256)
105 3nh6_A ATP-binding cassette SU 97.6 8.4E-05 2.9E-09 56.8 5.7 23 52-74 81-103 (306)
106 1ex7_A Guanylate kinase; subst 97.6 6.2E-05 2.1E-09 53.4 4.7 28 52-79 2-29 (186)
107 2b8t_A Thymidine kinase; deoxy 97.6 0.00021 7.1E-09 52.2 7.5 81 51-134 12-125 (223)
108 1ly1_A Polynucleotide kinase; 97.6 4.6E-05 1.6E-09 52.9 3.6 22 52-73 3-24 (181)
109 3lw7_A Adenylate kinase relate 97.6 3.8E-05 1.3E-09 52.9 2.9 22 52-74 2-23 (179)
110 3trf_A Shikimate kinase, SK; a 97.6 5.3E-05 1.8E-09 53.1 3.7 26 51-76 5-30 (185)
111 1g5t_A COB(I)alamin adenosyltr 97.6 0.00019 6.6E-09 51.2 6.5 85 51-135 28-163 (196)
112 3vaa_A Shikimate kinase, SK; s 97.6 5.6E-05 1.9E-09 53.8 3.7 26 51-76 25-50 (199)
113 1odf_A YGR205W, hypothetical 3 97.5 0.00015 5.3E-09 54.9 5.8 25 51-75 31-55 (290)
114 1kag_A SKI, shikimate kinase I 97.5 5.2E-05 1.8E-09 52.5 3.0 24 52-75 5-28 (173)
115 1zp6_A Hypothetical protein AT 97.5 5.9E-05 2E-09 53.1 3.3 24 51-74 9-32 (191)
116 1kgd_A CASK, peripheral plasma 97.5 6.9E-05 2.4E-09 52.6 3.4 24 52-75 6-29 (180)
117 3nbx_X ATPase RAVA; AAA+ ATPas 97.5 5.8E-05 2E-09 61.5 3.4 44 27-75 22-65 (500)
118 1g8p_A Magnesium-chelatase 38 97.5 4.1E-05 1.4E-09 58.9 2.3 47 27-76 24-70 (350)
119 2rhm_A Putative kinase; P-loop 97.5 9.8E-05 3.4E-09 51.9 4.1 25 51-75 5-29 (193)
120 1nks_A Adenylate kinase; therm 97.5 8E-05 2.7E-09 52.2 3.6 25 52-76 2-26 (194)
121 3t61_A Gluconokinase; PSI-biol 97.4 6.2E-05 2.1E-09 53.6 2.8 25 51-75 18-42 (202)
122 3a00_A Guanylate kinase, GMP k 97.4 6.8E-05 2.3E-09 52.8 3.0 25 52-76 2-26 (186)
123 1via_A Shikimate kinase; struc 97.4 8E-05 2.7E-09 51.8 3.1 25 52-76 5-29 (175)
124 1z47_A CYSA, putative ABC-tran 97.4 0.00032 1.1E-08 54.7 6.8 23 52-74 42-64 (355)
125 1zuh_A Shikimate kinase; alpha 97.4 0.00011 3.7E-09 50.7 3.8 26 51-76 7-32 (168)
126 1uj2_A Uridine-cytidine kinase 97.4 0.0001 3.5E-09 54.4 3.8 25 51-75 22-46 (252)
127 3uie_A Adenylyl-sulfate kinase 97.4 0.00011 3.7E-09 52.3 3.8 26 51-76 25-50 (200)
128 1kht_A Adenylate kinase; phosp 97.4 9.1E-05 3.1E-09 51.9 3.4 25 52-76 4-28 (192)
129 3iij_A Coilin-interacting nucl 97.4 8.1E-05 2.8E-09 52.0 3.1 25 51-75 11-35 (180)
130 3tlx_A Adenylate kinase 2; str 97.4 0.00012 3.9E-09 54.0 4.0 25 51-75 29-53 (243)
131 3tr0_A Guanylate kinase, GMP k 97.4 8.6E-05 3E-09 52.7 3.2 24 52-75 8-31 (205)
132 2ze6_A Isopentenyl transferase 97.4 0.0001 3.5E-09 54.7 3.7 24 52-75 2-25 (253)
133 1tev_A UMP-CMP kinase; ploop, 97.4 0.00011 3.7E-09 51.6 3.7 24 51-74 3-26 (196)
134 2yyz_A Sugar ABC transporter, 97.4 0.00038 1.3E-08 54.3 7.0 23 52-74 30-52 (359)
135 1knq_A Gluconate kinase; ALFA/ 97.4 0.00011 3.9E-09 50.9 3.7 24 51-74 8-31 (175)
136 3dzd_A Transcriptional regulat 97.4 0.0023 7.8E-08 50.0 11.5 48 27-75 129-176 (368)
137 2qor_A Guanylate kinase; phosp 97.4 8.8E-05 3E-09 53.0 3.1 25 51-75 12-36 (204)
138 4eun_A Thermoresistant glucoki 97.4 0.00011 3.7E-09 52.3 3.5 25 51-75 29-53 (200)
139 1v43_A Sugar-binding transport 97.4 0.00044 1.5E-08 54.2 7.2 23 52-74 38-60 (372)
140 1ye8_A Protein THEP1, hypothet 97.4 0.0001 3.5E-09 51.9 3.3 64 94-159 96-170 (178)
141 2iyv_A Shikimate kinase, SK; t 97.4 0.0001 3.5E-09 51.6 3.2 24 52-75 3-26 (184)
142 2jaq_A Deoxyguanosine kinase; 97.4 0.00011 3.8E-09 52.0 3.4 24 53-76 2-25 (205)
143 2pt7_A CAG-ALFA; ATPase, prote 97.4 0.00038 1.3E-08 53.7 6.7 85 52-139 172-279 (330)
144 2bdt_A BH3686; alpha-beta prot 97.4 0.00012 4.2E-09 51.4 3.6 23 52-74 3-25 (189)
145 3rlf_A Maltose/maltodextrin im 97.4 0.00025 8.7E-09 55.7 5.6 23 52-74 30-52 (381)
146 1gvn_B Zeta; postsegregational 97.4 0.00022 7.5E-09 53.9 5.1 25 51-75 33-57 (287)
147 3fvq_A Fe(3+) IONS import ATP- 97.4 0.00054 1.8E-08 53.5 7.4 23 52-74 31-53 (359)
148 1y63_A LMAJ004144AAA protein; 97.4 0.00013 4.3E-09 51.4 3.5 24 51-74 10-33 (184)
149 3cm0_A Adenylate kinase; ATP-b 97.4 0.00015 5.3E-09 50.6 4.0 24 51-74 4-27 (186)
150 2c95_A Adenylate kinase 1; tra 97.4 0.00012 4.2E-09 51.5 3.4 25 51-75 9-33 (196)
151 3tau_A Guanylate kinase, GMP k 97.4 0.00012 4.1E-09 52.6 3.4 26 51-76 8-33 (208)
152 3tqc_A Pantothenate kinase; bi 97.4 0.00023 7.7E-09 54.8 5.0 48 29-76 69-117 (321)
153 2vli_A Antibiotic resistance p 97.3 8E-05 2.7E-09 51.9 2.3 25 51-75 5-29 (183)
154 2j41_A Guanylate kinase; GMP, 97.3 0.00013 4.3E-09 51.9 3.4 25 51-75 6-30 (207)
155 2it1_A 362AA long hypothetical 97.3 0.00039 1.3E-08 54.3 6.4 23 52-74 30-52 (362)
156 2plr_A DTMP kinase, probable t 97.3 0.00016 5.3E-09 51.5 3.8 26 51-76 4-29 (213)
157 1g41_A Heat shock protein HSLU 97.3 0.00025 8.6E-09 56.8 5.3 52 27-78 15-77 (444)
158 3asz_A Uridine kinase; cytidin 97.3 0.00015 5E-09 51.9 3.6 26 51-76 6-31 (211)
159 1ukz_A Uridylate kinase; trans 97.3 0.00017 5.8E-09 51.2 3.8 24 51-74 15-38 (203)
160 1e6c_A Shikimate kinase; phosp 97.3 0.00013 4.5E-09 50.3 3.2 24 52-75 3-26 (173)
161 2bwj_A Adenylate kinase 5; pho 97.3 0.00014 4.7E-09 51.4 3.3 25 51-75 12-36 (199)
162 1qf9_A UMP/CMP kinase, protein 97.3 0.00016 5.6E-09 50.6 3.6 25 51-75 6-30 (194)
163 1cke_A CK, MSSA, protein (cyti 97.3 0.00016 5.3E-09 52.3 3.5 24 52-75 6-29 (227)
164 3a4m_A L-seryl-tRNA(SEC) kinas 97.3 0.00017 6E-09 53.5 3.8 24 51-74 4-27 (260)
165 2pt5_A Shikimate kinase, SK; a 97.3 0.00019 6.4E-09 49.4 3.7 23 53-75 2-24 (168)
166 2cdn_A Adenylate kinase; phosp 97.3 0.0002 6.8E-09 50.9 3.9 25 51-75 20-44 (201)
167 3b9q_A Chloroplast SRP recepto 97.3 0.00074 2.5E-08 51.4 7.3 25 51-75 100-124 (302)
168 3umf_A Adenylate kinase; rossm 97.3 0.0002 6.7E-09 52.1 3.8 25 51-75 29-53 (217)
169 1lvg_A Guanylate kinase, GMP k 97.3 0.00013 4.5E-09 52.0 2.8 25 51-75 4-28 (198)
170 1nn5_A Similar to deoxythymidy 97.3 0.00018 6.1E-09 51.4 3.6 25 51-75 9-33 (215)
171 2ga8_A Hypothetical 39.9 kDa p 97.3 0.00028 9.5E-09 54.9 4.7 29 51-79 24-52 (359)
172 2if2_A Dephospho-COA kinase; a 97.3 0.00017 5.6E-09 51.3 3.3 22 52-73 2-23 (204)
173 2p5t_B PEZT; postsegregational 97.3 0.00027 9.3E-09 52.2 4.5 26 51-76 32-57 (253)
174 2yvu_A Probable adenylyl-sulfa 97.3 0.00022 7.6E-09 50.0 3.8 26 51-76 13-38 (186)
175 2bbw_A Adenylate kinase 4, AK4 97.3 0.00018 6.1E-09 52.9 3.4 24 51-74 27-50 (246)
176 2pbr_A DTMP kinase, thymidylat 97.3 0.00019 6.5E-09 50.3 3.4 23 53-75 2-24 (195)
177 3fb4_A Adenylate kinase; psych 97.2 0.0002 6.8E-09 51.4 3.5 23 53-75 2-24 (216)
178 1jr3_D DNA polymerase III, del 97.2 0.005 1.7E-07 47.2 11.7 114 51-164 18-154 (343)
179 1uf9_A TT1252 protein; P-loop, 97.2 0.00023 7.8E-09 50.4 3.7 24 51-74 8-31 (203)
180 2wwf_A Thymidilate kinase, put 97.2 0.0002 6.7E-09 51.1 3.4 25 51-75 10-34 (212)
181 1aky_A Adenylate kinase; ATP:A 97.2 0.00021 7.3E-09 51.5 3.6 25 51-75 4-28 (220)
182 3dl0_A Adenylate kinase; phosp 97.2 0.00022 7.5E-09 51.2 3.5 22 53-74 2-23 (216)
183 3zvl_A Bifunctional polynucleo 97.2 0.001 3.6E-08 52.8 7.7 56 51-107 258-318 (416)
184 3ney_A 55 kDa erythrocyte memb 97.2 0.00023 7.9E-09 50.9 3.6 26 51-76 19-44 (197)
185 1znw_A Guanylate kinase, GMP k 97.2 0.00022 7.4E-09 51.1 3.4 25 51-75 20-44 (207)
186 3b5x_A Lipid A export ATP-bind 97.2 0.0017 5.9E-08 53.7 9.2 23 52-74 370-392 (582)
187 1zd8_A GTP:AMP phosphotransfer 97.2 0.00022 7.4E-09 51.7 3.3 24 51-74 7-30 (227)
188 1jjv_A Dephospho-COA kinase; P 97.2 0.00023 7.8E-09 50.7 3.4 22 52-73 3-24 (206)
189 1zak_A Adenylate kinase; ATP:A 97.2 0.00021 7.1E-09 51.6 3.0 26 51-76 5-30 (222)
190 2jeo_A Uridine-cytidine kinase 97.2 0.00024 8.3E-09 52.2 3.4 25 51-75 25-49 (245)
191 2qt1_A Nicotinamide riboside k 97.2 0.00027 9.2E-09 50.4 3.5 24 51-74 21-44 (207)
192 2z0h_A DTMP kinase, thymidylat 97.2 0.00028 9.5E-09 49.7 3.5 23 53-75 2-24 (197)
193 3ice_A Transcription terminati 97.2 0.00073 2.5E-08 53.3 6.1 24 52-75 175-198 (422)
194 1z6g_A Guanylate kinase; struc 97.2 0.00021 7E-09 51.8 2.9 24 52-75 24-47 (218)
195 3qf4_B Uncharacterized ABC tra 97.2 0.00058 2E-08 56.8 5.9 23 52-74 382-404 (598)
196 3ozx_A RNAse L inhibitor; ATP 97.2 0.0011 3.7E-08 54.5 7.4 23 52-74 295-317 (538)
197 1sq5_A Pantothenate kinase; P- 97.2 0.00049 1.7E-08 52.5 5.0 26 51-76 80-105 (308)
198 1yqt_A RNAse L inhibitor; ATP- 97.1 0.0013 4.6E-08 53.9 7.8 23 52-74 313-335 (538)
199 3k1j_A LON protease, ATP-depen 97.1 0.00035 1.2E-08 58.1 4.4 44 27-75 41-84 (604)
200 1htw_A HI0065; nucleotide-bind 97.1 0.00033 1.1E-08 48.3 3.6 25 51-75 33-57 (158)
201 3ozx_A RNAse L inhibitor; ATP 97.1 0.0013 4.3E-08 54.1 7.5 24 51-74 25-48 (538)
202 2og2_A Putative signal recogni 97.1 0.0013 4.6E-08 51.2 7.4 25 51-75 157-181 (359)
203 2v54_A DTMP kinase, thymidylat 97.1 0.00028 9.5E-09 50.0 3.2 25 51-75 4-28 (204)
204 3bk7_A ABC transporter ATP-bin 97.1 0.0018 6.3E-08 53.9 8.5 23 52-74 383-405 (607)
205 2hf9_A Probable hydrogenase ni 97.1 0.00045 1.5E-08 49.7 4.3 25 51-75 38-62 (226)
206 2grj_A Dephospho-COA kinase; T 97.1 0.00033 1.1E-08 49.9 3.5 24 51-74 12-35 (192)
207 1zu4_A FTSY; GTPase, signal re 97.1 0.00098 3.3E-08 51.2 6.3 26 51-76 105-130 (320)
208 3qf4_A ABC transporter, ATP-bi 97.1 0.0009 3.1E-08 55.5 6.5 23 52-74 370-392 (587)
209 3aez_A Pantothenate kinase; tr 97.1 0.00033 1.1E-08 53.7 3.6 26 51-76 90-115 (312)
210 1gtv_A TMK, thymidylate kinase 97.1 0.00016 5.6E-09 51.6 1.9 24 53-76 2-25 (214)
211 1xjc_A MOBB protein homolog; s 97.1 0.00035 1.2E-08 48.7 3.5 26 51-76 4-29 (169)
212 4a74_A DNA repair and recombin 97.1 0.00034 1.2E-08 50.3 3.5 24 51-74 25-48 (231)
213 2ehv_A Hypothetical protein PH 97.1 0.0003 1E-08 51.3 3.2 22 52-73 31-52 (251)
214 2pez_A Bifunctional 3'-phospho 97.1 0.00043 1.5E-08 48.2 3.8 25 51-75 5-29 (179)
215 1ny5_A Transcriptional regulat 97.1 0.0072 2.5E-07 47.5 11.2 47 27-74 137-183 (387)
216 4e22_A Cytidylate kinase; P-lo 97.1 0.00037 1.3E-08 51.5 3.5 24 51-74 27-50 (252)
217 2wsm_A Hydrogenase expression/ 97.1 0.00037 1.3E-08 50.0 3.4 41 32-75 14-54 (221)
218 2cvh_A DNA repair and recombin 97.0 0.00052 1.8E-08 49.0 4.1 23 51-73 20-42 (220)
219 1m7g_A Adenylylsulfate kinase; 97.0 0.00049 1.7E-08 49.3 3.9 26 51-76 25-50 (211)
220 3ake_A Cytidylate kinase; CMP 97.0 0.00049 1.7E-08 48.8 3.9 25 52-76 3-27 (208)
221 1ak2_A Adenylate kinase isoenz 97.0 0.00045 1.6E-08 50.3 3.7 25 51-75 16-40 (233)
222 3thx_A DNA mismatch repair pro 97.0 0.0022 7.4E-08 55.9 8.4 89 51-140 662-790 (934)
223 4a82_A Cystic fibrosis transme 97.0 0.00057 2E-08 56.5 4.6 23 52-74 368-390 (578)
224 3nwj_A ATSK2; P loop, shikimat 97.0 0.00037 1.3E-08 51.7 3.1 24 52-75 49-72 (250)
225 1e4v_A Adenylate kinase; trans 97.0 0.00043 1.5E-08 49.7 3.4 23 53-75 2-24 (214)
226 1vht_A Dephospho-COA kinase; s 97.0 0.00048 1.6E-08 49.5 3.6 23 51-73 4-26 (218)
227 3j16_B RLI1P; ribosome recycli 97.0 0.0021 7.1E-08 53.6 7.9 23 52-74 379-401 (608)
228 3lnc_A Guanylate kinase, GMP k 97.0 0.00025 8.4E-09 51.6 2.0 24 52-75 28-52 (231)
229 2xb4_A Adenylate kinase; ATP-b 97.0 0.00047 1.6E-08 50.0 3.5 23 53-75 2-24 (223)
230 3e70_C DPA, signal recognition 97.0 0.00095 3.3E-08 51.4 5.3 25 51-75 129-153 (328)
231 2i3b_A HCR-ntpase, human cance 97.0 0.00046 1.6E-08 49.0 3.3 23 53-75 3-25 (189)
232 3be4_A Adenylate kinase; malar 97.0 0.00048 1.6E-08 49.6 3.4 24 52-75 6-29 (217)
233 3j16_B RLI1P; ribosome recycli 97.0 0.0041 1.4E-07 51.8 9.3 23 52-74 104-126 (608)
234 3e1s_A Exodeoxyribonuclease V, 97.0 0.003 1E-07 52.3 8.4 80 52-134 205-315 (574)
235 1ltq_A Polynucleotide kinase; 97.0 0.0005 1.7E-08 51.8 3.6 23 52-74 3-25 (301)
236 3fwy_A Light-independent proto 97.0 0.0005 1.7E-08 52.7 3.5 25 51-75 48-72 (314)
237 1n0w_A DNA repair protein RAD5 97.0 0.00048 1.7E-08 50.0 3.2 23 52-74 25-47 (243)
238 1xx6_A Thymidine kinase; NESG, 97.0 0.0036 1.2E-07 44.4 7.7 82 51-135 8-118 (191)
239 2w0m_A SSO2452; RECA, SSPF, un 96.9 0.00056 1.9E-08 49.2 3.4 23 52-74 24-46 (235)
240 2f1r_A Molybdopterin-guanine d 96.9 0.00038 1.3E-08 48.6 2.4 25 52-76 3-27 (171)
241 2f6r_A COA synthase, bifunctio 96.9 0.00055 1.9E-08 51.5 3.4 23 51-73 75-97 (281)
242 3tif_A Uncharacterized ABC tra 96.9 0.00042 1.4E-08 50.8 2.7 23 52-74 32-54 (235)
243 1sky_E F1-ATPase, F1-ATP synth 96.9 0.0026 9E-08 51.2 7.4 25 52-76 152-176 (473)
244 3d3q_A TRNA delta(2)-isopenten 96.9 0.00066 2.2E-08 52.5 3.7 24 52-75 8-31 (340)
245 2onk_A Molybdate/tungstate ABC 96.9 0.00055 1.9E-08 50.4 3.2 23 52-74 25-47 (240)
246 3r20_A Cytidylate kinase; stru 96.9 0.00069 2.4E-08 49.7 3.7 26 51-76 9-34 (233)
247 3l0o_A Transcription terminati 96.9 0.0017 5.8E-08 51.2 6.0 37 38-76 164-200 (427)
248 1ewq_A DNA mismatch repair pro 96.9 0.0048 1.7E-07 52.7 9.3 86 52-139 577-702 (765)
249 3crm_A TRNA delta(2)-isopenten 96.9 0.00069 2.3E-08 52.1 3.7 24 52-75 6-29 (323)
250 3thx_B DNA mismatch repair pro 96.9 0.005 1.7E-07 53.6 9.4 88 51-139 673-800 (918)
251 1vma_A Cell division protein F 96.9 0.0016 5.6E-08 49.6 5.7 42 35-76 83-129 (306)
252 2pcj_A ABC transporter, lipopr 96.9 0.00046 1.6E-08 50.2 2.5 23 52-74 31-53 (224)
253 2yhs_A FTSY, cell division pro 96.9 0.0028 9.4E-08 51.5 7.2 25 51-75 293-317 (503)
254 1np6_A Molybdopterin-guanine d 96.9 0.00071 2.4E-08 47.4 3.4 26 51-76 6-31 (174)
255 1rj9_A FTSY, signal recognitio 96.9 0.00075 2.6E-08 51.4 3.8 25 51-75 102-126 (304)
256 3bh0_A DNAB-like replicative h 96.9 0.0018 6.3E-08 49.4 5.9 25 51-75 68-92 (315)
257 2ged_A SR-beta, signal recogni 96.9 0.00076 2.6E-08 47.1 3.5 24 51-74 48-71 (193)
258 3b85_A Phosphate starvation-in 96.9 0.00046 1.6E-08 49.7 2.3 23 52-74 23-45 (208)
259 3p32_A Probable GTPase RV1496/ 96.8 0.0014 4.8E-08 50.9 5.1 25 51-75 79-103 (355)
260 2cbz_A Multidrug resistance-as 96.8 0.00058 2E-08 50.2 2.7 23 52-74 32-54 (237)
261 2d2e_A SUFC protein; ABC-ATPas 96.8 0.00074 2.5E-08 49.9 3.2 22 52-73 30-51 (250)
262 1b0u_A Histidine permease; ABC 96.8 0.00061 2.1E-08 50.8 2.7 23 52-74 33-55 (262)
263 3gfo_A Cobalt import ATP-bindi 96.8 0.00061 2.1E-08 51.2 2.7 22 52-73 35-56 (275)
264 1oix_A RAS-related protein RAB 96.8 0.00084 2.9E-08 47.2 3.3 24 51-74 29-52 (191)
265 1g6h_A High-affinity branched- 96.8 0.00063 2.2E-08 50.5 2.7 23 52-74 34-56 (257)
266 2zu0_C Probable ATP-dependent 96.8 0.00078 2.7E-08 50.3 3.2 23 52-74 47-69 (267)
267 3foz_A TRNA delta(2)-isopenten 96.8 0.00097 3.3E-08 51.0 3.7 25 51-75 10-34 (316)
268 1ji0_A ABC transporter; ATP bi 96.8 0.00066 2.2E-08 49.9 2.7 23 52-74 33-55 (240)
269 4g1u_C Hemin import ATP-bindin 96.8 0.00067 2.3E-08 50.7 2.6 23 52-74 38-60 (266)
270 4dkx_A RAS-related protein RAB 96.8 0.0029 9.8E-08 45.7 5.9 22 53-74 15-36 (216)
271 1sgw_A Putative ABC transporte 96.8 0.00058 2E-08 49.4 2.2 23 52-74 36-58 (214)
272 2xxa_A Signal recognition part 96.8 0.0043 1.5E-07 49.6 7.4 41 36-76 79-125 (433)
273 1mv5_A LMRA, multidrug resista 96.8 0.00075 2.6E-08 49.7 2.9 23 52-74 29-51 (243)
274 2f9l_A RAB11B, member RAS onco 96.7 0.00088 3E-08 47.2 3.1 24 51-74 5-28 (199)
275 1wb9_A DNA mismatch repair pro 96.7 0.0032 1.1E-07 54.1 7.1 88 51-139 607-734 (800)
276 2v9p_A Replication protein E1; 96.7 0.00091 3.1E-08 51.0 3.4 24 52-75 127-150 (305)
277 1svm_A Large T antigen; AAA+ f 96.7 0.0013 4.6E-08 51.6 4.4 56 51-107 169-226 (377)
278 2pze_A Cystic fibrosis transme 96.7 0.00072 2.5E-08 49.4 2.7 23 52-74 35-57 (229)
279 2olj_A Amino acid ABC transpor 96.7 0.00071 2.4E-08 50.5 2.7 23 52-74 51-73 (263)
280 2ff7_A Alpha-hemolysin translo 96.7 0.00073 2.5E-08 49.9 2.7 23 52-74 36-58 (247)
281 3exa_A TRNA delta(2)-isopenten 96.7 0.00096 3.3E-08 51.1 3.4 25 51-75 3-27 (322)
282 3a8t_A Adenylate isopentenyltr 96.7 0.00064 2.2E-08 52.5 2.4 26 51-76 40-65 (339)
283 4a1f_A DNAB helicase, replicat 96.7 0.002 6.8E-08 49.8 5.1 43 31-75 28-70 (338)
284 1nlf_A Regulatory protein REPA 96.7 0.00088 3E-08 50.1 3.1 25 52-76 31-55 (279)
285 3sop_A Neuronal-specific septi 96.7 0.00096 3.3E-08 50.0 3.3 22 53-74 4-25 (270)
286 1g8f_A Sulfate adenylyltransfe 96.7 0.0015 5E-08 53.3 4.6 47 29-76 374-420 (511)
287 1a7j_A Phosphoribulokinase; tr 96.7 0.00043 1.5E-08 52.4 1.3 25 51-75 5-29 (290)
288 2dr3_A UPF0273 protein PH0284; 96.7 0.001 3.5E-08 48.3 3.3 23 52-74 24-46 (247)
289 4eaq_A DTMP kinase, thymidylat 96.7 0.0013 4.4E-08 48.0 3.9 26 51-76 26-51 (229)
290 2px0_A Flagellar biosynthesis 96.7 0.0011 3.6E-08 50.4 3.5 26 51-76 105-130 (296)
291 2ghi_A Transport protein; mult 96.7 0.00082 2.8E-08 50.1 2.7 23 52-74 47-69 (260)
292 2dyk_A GTP-binding protein; GT 96.7 0.0013 4.5E-08 44.2 3.6 23 52-74 2-24 (161)
293 1cr0_A DNA primase/helicase; R 96.7 0.0011 3.8E-08 49.9 3.4 24 52-75 36-59 (296)
294 2ixe_A Antigen peptide transpo 96.7 0.00083 2.8E-08 50.3 2.7 23 52-74 46-68 (271)
295 2yz2_A Putative ABC transporte 96.7 0.00084 2.9E-08 50.1 2.7 23 52-74 34-56 (266)
296 2qi9_C Vitamin B12 import ATP- 96.7 0.00084 2.9E-08 49.7 2.7 23 52-74 27-49 (249)
297 2ihy_A ABC transporter, ATP-bi 96.7 0.00084 2.9E-08 50.5 2.7 23 52-74 48-70 (279)
298 2nq2_C Hypothetical ABC transp 96.7 0.00087 3E-08 49.7 2.6 23 52-74 32-54 (253)
299 3kta_A Chromosome segregation 96.6 0.0012 4E-08 46.0 3.1 24 52-75 27-50 (182)
300 2wji_A Ferrous iron transport 96.6 0.0016 5.3E-08 44.5 3.7 24 51-74 3-26 (165)
301 1q3t_A Cytidylate kinase; nucl 96.6 0.0014 4.7E-08 47.8 3.5 25 51-75 16-40 (236)
302 2ocp_A DGK, deoxyguanosine kin 96.6 0.0015 5.1E-08 47.7 3.7 25 51-75 2-26 (241)
303 3cr8_A Sulfate adenylyltranfer 96.6 0.002 6.7E-08 53.1 4.7 26 51-76 369-394 (552)
304 2r6a_A DNAB helicase, replicat 96.6 0.0041 1.4E-07 49.9 6.4 25 51-75 203-227 (454)
305 1yrb_A ATP(GTP)binding protein 96.6 0.0017 5.8E-08 47.7 3.8 25 51-75 14-38 (262)
306 1pzn_A RAD51, DNA repair and r 96.6 0.0018 6.1E-08 50.3 4.0 25 51-75 131-155 (349)
307 3kl4_A SRP54, signal recogniti 96.6 0.0027 9.2E-08 50.7 5.1 25 51-75 97-121 (433)
308 2qmh_A HPR kinase/phosphorylas 96.6 0.0011 3.8E-08 47.4 2.5 23 52-74 35-57 (205)
309 1lw7_A Transcriptional regulat 96.5 0.0017 5.8E-08 50.5 3.7 24 51-74 170-193 (365)
310 2zej_A Dardarin, leucine-rich 96.5 0.0011 3.8E-08 46.1 2.4 21 53-73 4-24 (184)
311 2pjz_A Hypothetical protein ST 96.5 0.0012 4E-08 49.3 2.7 22 52-73 31-52 (263)
312 1z2a_A RAS-related protein RAB 96.5 0.0016 5.4E-08 44.1 3.1 24 51-74 5-28 (168)
313 2q6t_A DNAB replication FORK h 96.5 0.0052 1.8E-07 49.1 6.5 38 36-75 187-224 (444)
314 2wjg_A FEOB, ferrous iron tran 96.5 0.0017 5.8E-08 45.0 3.3 24 51-74 7-30 (188)
315 3f9v_A Minichromosome maintena 96.5 0.00064 2.2E-08 56.5 1.3 50 26-75 294-351 (595)
316 2ce2_X GTPase HRAS; signaling 96.5 0.0016 5.3E-08 43.8 3.0 23 52-74 4-26 (166)
317 3hr8_A Protein RECA; alpha and 96.5 0.0018 6.1E-08 50.5 3.6 39 36-75 46-85 (356)
318 3upu_A ATP-dependent DNA helic 96.5 0.0013 4.6E-08 52.7 3.0 25 52-76 46-70 (459)
319 3eph_A TRNA isopentenyltransfe 96.5 0.0019 6.6E-08 51.0 3.7 25 51-75 2-26 (409)
320 2j9r_A Thymidine kinase; TK1, 96.5 0.007 2.4E-07 43.7 6.3 82 51-135 28-138 (214)
321 2o8b_B DNA mismatch repair pro 96.5 0.0061 2.1E-07 53.7 7.0 88 52-141 790-918 (1022)
322 1nij_A Hypothetical protein YJ 96.5 0.0016 5.3E-08 49.9 3.0 24 51-74 4-27 (318)
323 2v3c_C SRP54, signal recogniti 96.5 0.0024 8.2E-08 51.0 4.2 25 51-75 99-123 (432)
324 1p9r_A General secretion pathw 96.5 0.0042 1.4E-07 49.4 5.5 62 51-112 167-251 (418)
325 1tq4_A IIGP1, interferon-induc 96.5 0.0012 4E-08 52.5 2.3 24 51-74 69-92 (413)
326 2r8r_A Sensor protein; KDPD, P 96.4 0.0023 7.7E-08 46.7 3.6 24 52-75 7-30 (228)
327 2qm8_A GTPase/ATPase; G protei 96.4 0.0036 1.2E-07 48.3 4.9 24 51-74 55-78 (337)
328 1kao_A RAP2A; GTP-binding prot 96.4 0.002 6.9E-08 43.4 3.1 23 52-74 4-26 (167)
329 1u8z_A RAS-related protein RAL 96.4 0.002 7E-08 43.4 3.1 24 51-74 4-27 (168)
330 2h92_A Cytidylate kinase; ross 96.4 0.0018 6.3E-08 46.3 3.0 24 52-75 4-27 (219)
331 3g5u_A MCG1178, multidrug resi 96.4 0.0042 1.4E-07 56.0 5.9 23 52-74 417-439 (1284)
332 2bbs_A Cystic fibrosis transme 96.4 0.0015 5.1E-08 49.5 2.6 23 52-74 65-87 (290)
333 1c1y_A RAS-related protein RAP 96.4 0.0021 7.1E-08 43.4 3.1 23 52-74 4-26 (167)
334 3con_A GTPase NRAS; structural 96.4 0.0021 7E-08 44.7 3.1 24 51-74 21-44 (190)
335 3dm5_A SRP54, signal recogniti 96.4 0.0027 9.3E-08 50.8 4.2 26 51-76 100-125 (443)
336 2nzj_A GTP-binding protein REM 96.4 0.0019 6.6E-08 44.0 2.9 24 51-74 4-27 (175)
337 1v5w_A DMC1, meiotic recombina 96.4 0.0043 1.5E-07 47.9 5.2 24 51-74 122-145 (343)
338 3d31_A Sulfate/molybdate ABC t 96.4 0.0018 6.2E-08 50.3 3.0 23 52-74 27-49 (348)
339 1r8s_A ADP-ribosylation factor 96.4 0.0023 8E-08 43.1 3.3 22 53-74 2-23 (164)
340 1ek0_A Protein (GTP-binding pr 96.4 0.0022 7.5E-08 43.4 3.1 23 52-74 4-26 (170)
341 4f4c_A Multidrug resistance pr 96.4 0.0036 1.2E-07 56.6 5.3 23 52-74 445-467 (1321)
342 1z08_A RAS-related protein RAB 96.4 0.0022 7.4E-08 43.5 3.1 24 51-74 6-29 (170)
343 2vp4_A Deoxynucleoside kinase; 96.4 0.0011 3.8E-08 48.2 1.7 24 51-74 20-43 (230)
344 1z0j_A RAB-22, RAS-related pro 96.4 0.0022 7.6E-08 43.4 3.1 23 52-74 7-29 (170)
345 3gmt_A Adenylate kinase; ssgci 96.4 0.0025 8.5E-08 46.6 3.5 25 51-75 8-32 (230)
346 2axn_A 6-phosphofructo-2-kinas 96.4 0.0025 8.5E-08 52.1 3.8 25 51-75 35-59 (520)
347 2zr9_A Protein RECA, recombina 96.4 0.0021 7.1E-08 49.9 3.2 40 35-75 45-85 (349)
348 2zts_A Putative uncharacterize 96.4 0.0024 8.2E-08 46.4 3.4 24 51-74 30-53 (251)
349 3fdi_A Uncharacterized protein 96.4 0.0026 8.9E-08 45.4 3.5 28 52-79 7-34 (201)
350 1m7b_A RND3/RHOE small GTP-bin 96.4 0.0022 7.6E-08 44.4 3.0 24 51-74 7-30 (184)
351 1g29_1 MALK, maltose transport 96.3 0.0021 7.2E-08 50.3 3.2 23 52-74 30-52 (372)
352 3g5u_A MCG1178, multidrug resi 96.3 0.0034 1.2E-07 56.6 4.9 23 52-74 1060-1082(1284)
353 1g16_A RAS-related protein SEC 96.3 0.0023 7.9E-08 43.3 3.0 24 51-74 3-26 (170)
354 1wms_A RAB-9, RAB9, RAS-relate 96.3 0.0024 8.2E-08 43.7 3.1 24 51-74 7-30 (177)
355 1nrj_B SR-beta, signal recogni 96.3 0.0026 8.9E-08 45.3 3.4 24 51-74 12-35 (218)
356 1fzq_A ADP-ribosylation factor 96.3 0.0041 1.4E-07 43.1 4.3 24 51-74 16-39 (181)
357 4edh_A DTMP kinase, thymidylat 96.3 0.0036 1.2E-07 45.2 4.1 26 51-76 6-31 (213)
358 1m8p_A Sulfate adenylyltransfe 96.3 0.0049 1.7E-07 51.0 5.3 26 51-76 396-421 (573)
359 2yv5_A YJEQ protein; hydrolase 96.3 0.0034 1.2E-07 47.7 4.1 22 52-74 166-187 (302)
360 1oxx_K GLCV, glucose, ABC tran 96.3 0.0017 5.7E-08 50.6 2.4 23 52-74 32-54 (353)
361 1r2q_A RAS-related protein RAB 96.3 0.0025 8.6E-08 43.1 3.1 24 51-74 6-29 (170)
362 4gzl_A RAS-related C3 botulinu 96.3 0.0028 9.6E-08 44.9 3.5 24 51-74 30-53 (204)
363 2erx_A GTP-binding protein DI- 96.3 0.002 6.8E-08 43.7 2.6 23 52-74 4-26 (172)
364 2fn4_A P23, RAS-related protei 96.3 0.0033 1.1E-07 43.0 3.7 24 51-74 9-32 (181)
365 1ky3_A GTP-binding protein YPT 96.3 0.0035 1.2E-07 42.9 3.8 24 51-74 8-31 (182)
366 1ls1_A Signal recognition part 96.3 0.0032 1.1E-07 47.7 3.9 26 51-76 98-123 (295)
367 3ihw_A Centg3; RAS, centaurin, 96.3 0.0025 8.5E-08 44.4 3.1 24 51-74 20-43 (184)
368 3q85_A GTP-binding protein REM 96.3 0.0024 8.2E-08 43.3 3.0 22 52-73 3-24 (169)
369 1z0f_A RAB14, member RAS oncog 96.3 0.0027 9.2E-08 43.4 3.1 24 51-74 15-38 (179)
370 1f2t_A RAD50 ABC-ATPase; DNA d 96.3 0.0031 1.1E-07 42.8 3.4 25 51-75 23-47 (149)
371 2lkc_A Translation initiation 96.3 0.0025 8.6E-08 43.6 3.0 24 51-74 8-31 (178)
372 2gj8_A MNME, tRNA modification 96.3 0.0024 8.3E-08 44.0 2.9 23 52-74 5-27 (172)
373 2www_A Methylmalonic aciduria 96.3 0.003 1E-07 48.9 3.7 24 51-74 74-97 (349)
374 3lda_A DNA repair protein RAD5 96.3 0.0023 7.7E-08 50.7 3.0 37 36-73 164-200 (400)
375 3bc1_A RAS-related protein RAB 96.3 0.0027 9.3E-08 43.9 3.1 24 51-74 11-34 (195)
376 3end_A Light-independent proto 96.3 0.0034 1.2E-07 47.4 3.9 26 51-76 41-66 (307)
377 1upt_A ARL1, ADP-ribosylation 96.3 0.0028 9.7E-08 43.0 3.1 24 51-74 7-30 (171)
378 2gks_A Bifunctional SAT/APS ki 96.3 0.005 1.7E-07 50.6 5.0 26 51-76 372-397 (546)
379 1p5z_B DCK, deoxycytidine kina 96.3 0.0012 4.2E-08 48.9 1.3 25 51-75 24-48 (263)
380 3q72_A GTP-binding protein RAD 96.3 0.0024 8.2E-08 43.2 2.7 21 53-73 4-24 (166)
381 3c5c_A RAS-like protein 12; GD 96.2 0.0028 9.7E-08 44.2 3.1 24 51-74 21-44 (187)
382 1m2o_B GTP-binding protein SAR 96.2 0.0027 9.4E-08 44.4 3.0 23 52-74 24-46 (190)
383 4dsu_A GTPase KRAS, isoform 2B 96.2 0.0029 9.8E-08 43.7 3.1 24 51-74 4-27 (189)
384 2cjw_A GTP-binding protein GEM 96.2 0.0031 1E-07 44.3 3.3 24 51-74 6-29 (192)
385 1cp2_A CP2, nitrogenase iron p 96.2 0.0039 1.3E-07 46.0 4.0 26 52-77 2-27 (269)
386 3kkq_A RAS-related protein M-R 96.2 0.003 1E-07 43.5 3.1 24 51-74 18-41 (183)
387 1bif_A 6-phosphofructo-2-kinas 96.2 0.0035 1.2E-07 50.5 3.9 25 51-75 39-63 (469)
388 2hxs_A RAB-26, RAS-related pro 96.2 0.0025 8.5E-08 43.6 2.7 24 51-74 6-29 (178)
389 2iwr_A Centaurin gamma 1; ANK 96.2 0.0023 7.8E-08 43.9 2.5 24 51-74 7-30 (178)
390 2y8e_A RAB-protein 6, GH09086P 96.2 0.0029 1E-07 43.2 3.0 23 52-74 15-37 (179)
391 2oil_A CATX-8, RAS-related pro 96.2 0.003 1E-07 44.0 3.1 24 51-74 25-48 (193)
392 3bgw_A DNAB-like replicative h 96.2 0.0082 2.8E-07 48.1 6.0 25 51-75 197-221 (444)
393 2gza_A Type IV secretion syste 96.2 0.0022 7.4E-08 50.0 2.6 23 52-74 176-198 (361)
394 1svi_A GTP-binding protein YSX 96.2 0.0026 8.7E-08 44.4 2.7 24 51-74 23-46 (195)
395 2bme_A RAB4A, RAS-related prot 96.2 0.003 1E-07 43.6 3.0 24 51-74 10-33 (186)
396 2j37_W Signal recognition part 96.2 0.0076 2.6E-07 49.1 5.7 25 51-75 101-125 (504)
397 1mh1_A RAC1; GTP-binding, GTPa 96.2 0.0032 1.1E-07 43.3 3.1 23 52-74 6-28 (186)
398 3clv_A RAB5 protein, putative; 96.2 0.0031 1.1E-07 43.9 3.1 24 51-74 7-30 (208)
399 2a9k_A RAS-related protein RAL 96.2 0.0032 1.1E-07 43.3 3.1 24 51-74 18-41 (187)
400 3t1o_A Gliding protein MGLA; G 96.2 0.0032 1.1E-07 43.7 3.1 24 51-74 14-37 (198)
401 4f4c_A Multidrug resistance pr 96.2 0.0078 2.7E-07 54.4 6.3 23 52-74 1106-1128(1321)
402 2obl_A ESCN; ATPase, hydrolase 96.2 0.0031 1.1E-07 48.9 3.3 36 37-75 60-95 (347)
403 1u94_A RECA protein, recombina 96.2 0.0032 1.1E-07 49.0 3.3 39 36-75 48-87 (356)
404 3dz8_A RAS-related protein RAB 96.2 0.0034 1.2E-07 43.7 3.2 24 51-74 23-46 (191)
405 2efe_B Small GTP-binding prote 96.2 0.0033 1.1E-07 43.1 3.1 24 51-74 12-35 (181)
406 3gd7_A Fusion complex of cysti 96.2 0.003 1E-07 49.8 3.1 22 52-73 48-69 (390)
407 3bwd_D RAC-like GTP-binding pr 96.2 0.0034 1.2E-07 43.1 3.1 23 52-74 9-31 (182)
408 2p67_A LAO/AO transport system 96.2 0.006 2E-07 47.1 4.8 25 51-75 56-80 (341)
409 2cxx_A Probable GTP-binding pr 96.2 0.0029 1E-07 43.7 2.8 22 53-74 3-24 (190)
410 2bov_A RAla, RAS-related prote 96.2 0.0034 1.1E-07 44.1 3.1 24 51-74 14-37 (206)
411 3t5g_A GTP-binding protein RHE 96.1 0.0033 1.1E-07 43.2 3.0 24 51-74 6-29 (181)
412 2i1q_A DNA repair and recombin 96.1 0.0047 1.6E-07 47.1 4.1 38 36-74 84-121 (322)
413 1f6b_A SAR1; gtpases, N-termin 96.1 0.0047 1.6E-07 43.5 3.9 22 52-73 26-47 (198)
414 2g6b_A RAS-related protein RAB 96.1 0.0035 1.2E-07 42.9 3.1 24 51-74 10-33 (180)
415 2z43_A DNA repair and recombin 96.1 0.004 1.4E-07 47.7 3.7 25 51-75 107-131 (324)
416 1vg8_A RAS-related protein RAB 96.1 0.0034 1.2E-07 44.1 3.1 24 51-74 8-31 (207)
417 2atv_A RERG, RAS-like estrogen 96.1 0.0035 1.2E-07 43.9 3.1 24 51-74 28-51 (196)
418 3pqc_A Probable GTP-binding pr 96.1 0.0027 9.1E-08 44.1 2.5 24 51-74 23-46 (195)
419 1x6v_B Bifunctional 3'-phospho 96.1 0.0041 1.4E-07 52.0 3.8 25 51-75 52-76 (630)
420 2npi_A Protein CLP1; CLP1-PCF1 96.1 0.0028 9.5E-08 51.1 2.8 23 52-74 139-161 (460)
421 1c9k_A COBU, adenosylcobinamid 96.1 0.0031 1.1E-07 44.4 2.6 21 54-74 2-22 (180)
422 4akg_A Glutathione S-transfera 96.1 0.0069 2.4E-07 58.0 5.7 23 52-74 1268-1290(2695)
423 3ld9_A DTMP kinase, thymidylat 96.1 0.0054 1.9E-07 44.6 4.0 27 51-77 21-47 (223)
424 2ew1_A RAS-related protein RAB 96.1 0.0036 1.2E-07 44.4 3.0 24 51-74 26-49 (201)
425 3oes_A GTPase rhebl1; small GT 96.1 0.0036 1.2E-07 44.0 3.0 24 51-74 24-47 (201)
426 1zd9_A ADP-ribosylation factor 96.1 0.0038 1.3E-07 43.4 3.1 24 51-74 22-45 (188)
427 2gf9_A RAS-related protein RAB 96.1 0.0039 1.3E-07 43.3 3.1 24 51-74 22-45 (189)
428 1gwn_A RHO-related GTP-binding 96.1 0.0037 1.3E-07 44.4 3.0 24 51-74 28-51 (205)
429 1pui_A ENGB, probable GTP-bind 96.1 0.0018 6.1E-08 45.8 1.3 23 51-73 26-48 (210)
430 2fg5_A RAB-22B, RAS-related pr 96.1 0.0037 1.3E-07 43.6 3.0 24 51-74 23-46 (192)
431 1ega_A Protein (GTP-binding pr 96.1 0.0043 1.5E-07 47.0 3.6 24 51-74 8-31 (301)
432 3tkl_A RAS-related protein RAB 96.1 0.004 1.4E-07 43.3 3.1 24 51-74 16-39 (196)
433 3reg_A RHO-like small GTPase; 96.1 0.004 1.4E-07 43.5 3.1 24 51-74 23-46 (194)
434 2fh5_B SR-beta, signal recogni 96.1 0.0039 1.3E-07 44.2 3.1 24 51-74 7-30 (214)
435 3tw8_B RAS-related protein RAB 96.1 0.0034 1.2E-07 42.9 2.7 24 51-74 9-32 (181)
436 2a5j_A RAS-related protein RAB 96.1 0.004 1.4E-07 43.4 3.1 24 51-74 21-44 (191)
437 3tqf_A HPR(Ser) kinase; transf 96.1 0.0046 1.6E-07 43.3 3.3 23 52-74 17-39 (181)
438 1h65_A Chloroplast outer envel 96.0 0.0062 2.1E-07 45.2 4.3 24 51-74 39-62 (270)
439 2gf0_A GTP-binding protein DI- 96.0 0.0039 1.3E-07 43.5 3.0 24 51-74 8-31 (199)
440 2qnr_A Septin-2, protein NEDD5 96.0 0.0031 1E-07 47.9 2.6 21 53-73 20-40 (301)
441 1z06_A RAS-related protein RAB 96.0 0.0042 1.4E-07 43.2 3.1 24 51-74 20-43 (189)
442 1x3s_A RAS-related protein RAB 96.0 0.0043 1.5E-07 43.1 3.1 24 51-74 15-38 (195)
443 3lv8_A DTMP kinase, thymidylat 96.0 0.0047 1.6E-07 45.3 3.5 26 51-76 27-52 (236)
444 1u0l_A Probable GTPase ENGC; p 96.0 0.0059 2E-07 46.3 4.1 23 52-74 170-192 (301)
445 2p5s_A RAS and EF-hand domain 96.0 0.0043 1.5E-07 43.6 3.1 24 51-74 28-51 (199)
446 3def_A T7I23.11 protein; chlor 96.0 0.0076 2.6E-07 44.6 4.6 24 51-74 36-59 (262)
447 2afh_E Nitrogenase iron protei 96.0 0.005 1.7E-07 46.1 3.7 26 51-76 2-27 (289)
448 1zbd_A Rabphilin-3A; G protein 96.0 0.0035 1.2E-07 44.0 2.6 24 51-74 8-31 (203)
449 3io5_A Recombination and repai 96.0 0.0047 1.6E-07 47.4 3.4 24 52-75 29-52 (333)
450 2dpy_A FLII, flagellum-specifi 96.0 0.0071 2.4E-07 48.4 4.6 35 37-74 146-180 (438)
451 3cbq_A GTP-binding protein REM 96.0 0.0031 1.1E-07 44.4 2.3 23 51-73 23-45 (195)
452 3hdt_A Putative kinase; struct 96.0 0.0058 2E-07 44.4 3.7 29 51-79 14-42 (223)
453 3v9p_A DTMP kinase, thymidylat 96.0 0.0038 1.3E-07 45.6 2.7 27 51-77 25-51 (227)
454 2bcg_Y Protein YP2, GTP-bindin 96.0 0.0044 1.5E-07 43.7 3.0 24 51-74 8-31 (206)
455 3lxx_A GTPase IMAP family memb 96.0 0.0056 1.9E-07 44.5 3.7 24 51-74 29-52 (239)
456 4hlc_A DTMP kinase, thymidylat 96.0 0.0067 2.3E-07 43.4 3.9 27 52-78 3-29 (205)
457 2rcn_A Probable GTPase ENGC; Y 95.9 0.0045 1.5E-07 48.2 3.2 24 52-75 216-239 (358)
458 3kjh_A CO dehydrogenase/acetyl 95.9 0.0057 1.9E-07 44.3 3.6 24 54-77 3-26 (254)
459 3k53_A Ferrous iron transport 95.9 0.0046 1.6E-07 45.9 3.1 24 51-74 3-26 (271)
460 3cph_A RAS-related protein SEC 95.9 0.0051 1.7E-07 43.4 3.1 24 51-74 20-43 (213)
461 1j8m_F SRP54, signal recogniti 95.9 0.0039 1.3E-07 47.3 2.6 25 51-75 98-122 (297)
462 4tmk_A Protein (thymidylate ki 95.9 0.0056 1.9E-07 44.1 3.3 25 52-76 4-28 (213)
463 2ffh_A Protein (FFH); SRP54, s 95.9 0.007 2.4E-07 48.2 4.2 26 51-76 98-123 (425)
464 2fv8_A H6, RHO-related GTP-bin 95.9 0.005 1.7E-07 43.5 3.0 24 51-74 25-48 (207)
465 2atx_A Small GTP binding prote 95.9 0.0052 1.8E-07 42.8 3.0 24 51-74 18-41 (194)
466 4bas_A ADP-ribosylation factor 95.9 0.0063 2.1E-07 42.4 3.5 24 51-74 17-40 (199)
467 2j0v_A RAC-like GTP-binding pr 95.9 0.0052 1.8E-07 43.5 3.0 24 51-74 9-32 (212)
468 2g3y_A GTP-binding protein GEM 95.9 0.005 1.7E-07 44.2 2.9 23 51-73 37-59 (211)
469 1ksh_A ARF-like protein 2; sma 95.8 0.0037 1.3E-07 43.2 2.1 24 51-74 18-41 (186)
470 1zj6_A ADP-ribosylation factor 95.8 0.0052 1.8E-07 42.6 2.9 24 51-74 16-39 (187)
471 2hup_A RAS-related protein RAB 95.8 0.0054 1.9E-07 43.2 3.0 24 51-74 29-52 (201)
472 2q3h_A RAS homolog gene family 95.8 0.0053 1.8E-07 43.0 3.0 24 51-74 20-43 (201)
473 2o52_A RAS-related protein RAB 95.8 0.0052 1.8E-07 43.3 2.9 24 51-74 25-48 (200)
474 2fu5_C RAS-related protein RAB 95.8 0.0029 9.9E-08 43.6 1.5 24 51-74 8-31 (183)
475 2h17_A ADP-ribosylation factor 95.8 0.004 1.4E-07 43.0 2.2 24 51-74 21-44 (181)
476 2r2a_A Uncharacterized protein 95.8 0.0069 2.4E-07 43.2 3.5 24 51-74 5-28 (199)
477 2gco_A H9, RHO-related GTP-bin 95.8 0.0057 1.9E-07 43.1 3.0 24 51-74 25-48 (201)
478 1moz_A ARL1, ADP-ribosylation 95.8 0.0035 1.2E-07 43.2 1.9 23 51-73 18-40 (183)
479 3euj_A Chromosome partition pr 95.8 0.0057 2E-07 49.5 3.3 24 52-75 30-53 (483)
480 3llu_A RAS-related GTP-binding 95.8 0.0043 1.5E-07 43.5 2.3 24 51-74 20-43 (196)
481 3ch4_B Pmkase, phosphomevalona 95.8 0.0074 2.5E-07 43.2 3.5 25 51-75 11-35 (202)
482 3tmk_A Thymidylate kinase; pho 95.8 0.0071 2.4E-07 43.7 3.5 27 51-77 5-31 (216)
483 1yqt_A RNAse L inhibitor; ATP- 95.8 0.0054 1.8E-07 50.3 3.2 23 52-74 48-70 (538)
484 2qag_B Septin-6, protein NEDD5 95.8 0.0037 1.3E-07 49.8 2.1 22 53-74 44-65 (427)
485 3q3j_B RHO-related GTP-binding 95.8 0.0061 2.1E-07 43.5 3.1 24 51-74 27-50 (214)
486 2j1l_A RHO-related GTP-binding 95.8 0.0056 1.9E-07 43.6 2.8 24 51-74 34-57 (214)
487 2b6h_A ADP-ribosylation factor 95.8 0.0054 1.8E-07 42.9 2.7 23 51-73 29-51 (192)
488 3qks_A DNA double-strand break 95.7 0.0072 2.5E-07 43.1 3.3 26 51-76 23-48 (203)
489 2qu8_A Putative nucleolar GTP- 95.7 0.0054 1.8E-07 44.2 2.6 24 51-74 29-52 (228)
490 2oap_1 GSPE-2, type II secreti 95.7 0.0039 1.3E-07 50.8 2.0 62 52-113 261-349 (511)
491 2il1_A RAB12; G-protein, GDP, 95.7 0.0061 2.1E-07 42.6 2.8 24 51-74 26-49 (192)
492 3iev_A GTP-binding protein ERA 95.7 0.0078 2.7E-07 45.7 3.6 24 51-74 10-33 (308)
493 1tf7_A KAIC; homohexamer, hexa 95.7 0.0061 2.1E-07 49.8 3.1 20 53-72 41-60 (525)
494 4b3f_X DNA-binding protein smu 95.6 0.012 3.9E-07 49.3 4.7 35 35-74 194-228 (646)
495 3cpj_B GTP-binding protein YPT 95.6 0.0074 2.5E-07 43.2 3.1 24 51-74 13-36 (223)
496 2f7s_A C25KG, RAS-related prot 95.6 0.0069 2.4E-07 43.0 2.9 24 51-74 25-48 (217)
497 2xtp_A GTPase IMAP family memb 95.6 0.0081 2.8E-07 44.2 3.4 24 51-74 22-45 (260)
498 3io3_A DEHA2D07832P; chaperone 95.6 0.0081 2.8E-07 46.6 3.5 26 51-76 18-43 (348)
499 1xp8_A RECA protein, recombina 95.6 0.0074 2.5E-07 47.1 3.2 41 34-75 57-98 (366)
500 2qag_C Septin-7; cell cycle, c 95.6 0.0046 1.6E-07 49.2 2.1 22 53-74 33-54 (418)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.93 E-value=3.7e-25 Score=182.44 Aligned_cols=134 Identities=16% Similarity=0.174 Sum_probs=108.9
Q ss_pred ccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHH----HHhccccCc------C----------------
Q 040354 30 VGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFN----KITRRFEEF------P---------------- 83 (172)
Q Consensus 30 ~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~----~~~~~f~~~------~---------------- 83 (172)
|||+.+++.|.++|........++++|+||||+||||||+++++ .+..+|+.. .
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 59999999999999754333379999999999999999999997 366777544 1
Q ss_pred -----c------c-------cHHHHHHHhCCC-eeEEEEecCCCHHhHHHHHhhccCCCCCcEEEEEeCChhHHHhcC-C
Q 040354 84 -----N------I-------GLNFQSKRLTRK-KLLIVFDDVHHPRQIDCLIECLDWFASASRIIIISRDKQALISCG-V 143 (172)
Q Consensus 84 -----~------~-------~~~~~~~~l~~~-~~LlvlDdv~~~~~~~~l~~~~~~~~~~s~iiiTtr~~~~~~~~~-~ 143 (172)
+ . +...+++.+.++ ++||||||||+.+++ .+. .. +||+||+|||+..++..++ .
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~-~~----~gs~ilvTTR~~~v~~~~~~~ 284 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWA-QE----LRLRCLVTTRDVEISNAASQT 284 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHH-HH----TTCEEEEEESBGGGGGGCCSC
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-ccc-cc----CCCEEEEEcCCHHHHHHcCCC
Confidence 0 0 146777888886 999999999998866 222 11 7999999999999988775 4
Q ss_pred CceEEcCCCCHHHHHHHHhhhcCCCC
Q 040354 144 NKIYQMQELVHADALKLFSECAFEGD 169 (172)
Q Consensus 144 ~~~~~l~~l~~~~~~~lf~~~a~~~~ 169 (172)
...|+|++|+.++|++||.+.||+..
T Consensus 285 ~~~~~l~~L~~~ea~~Lf~~~a~~~~ 310 (549)
T 2a5y_B 285 CEFIEVTSLEIDECYDFLEAYGMPMP 310 (549)
T ss_dssp EEEEECCCCCHHHHHHHHHHTSCCCC
T ss_pred CeEEECCCCCHHHHHHHHHHHhcCCC
Confidence 46799999999999999999999864
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.88 E-value=9.8e-23 Score=179.80 Aligned_cols=136 Identities=20% Similarity=0.219 Sum_probs=107.5
Q ss_pred CCCCccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHH---HhccccCc------------------
Q 040354 24 ENNNHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNK---ITRRFEEF------------------ 82 (172)
Q Consensus 24 ~~~~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~---~~~~f~~~------------------ 82 (172)
..+..|+||++++++|.++|...... .++++|+||||+||||||++++++ ...+|...
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~~~~-~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 199 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKLNGE-PGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKL 199 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTTTTS-CEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHH
T ss_pred CCCceeccHHHHHHHHHHHHhhccCC-CCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHH
Confidence 55678999999999999999755444 799999999999999999999887 34445432
Q ss_pred ------------------Ccc--cHHHHHHHhCCC--eeEEEEecCCCHHhHHHHHhhccCCCCCcEEEEEeCChhHHHh
Q 040354 83 ------------------PNI--GLNFQSKRLTRK--KLLIVFDDVHHPRQIDCLIECLDWFASASRIIIISRDKQALIS 140 (172)
Q Consensus 83 ------------------~~~--~~~~~~~~l~~~--~~LlvlDdv~~~~~~~~l~~~~~~~~~~s~iiiTtr~~~~~~~ 140 (172)
.+. ....++..+.++ ++||||||+|+..+|..+ .+|++||+|||++.++..
T Consensus 200 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~ 272 (1249)
T 3sfz_A 200 QNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDS 272 (1249)
T ss_dssp HHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTT
T ss_pred HHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHHh
Confidence 001 344555666655 999999999998766543 589999999999988754
Q ss_pred -cCCCceEEcCC-CCHHHHHHHHhhhcCC
Q 040354 141 -CGVNKIYQMQE-LVHADALKLFSECAFE 167 (172)
Q Consensus 141 -~~~~~~~~l~~-l~~~~~~~lf~~~a~~ 167 (172)
+.....+++.+ |+.+++++||...++.
T Consensus 273 ~~~~~~~~~~~~~l~~~~a~~l~~~~~~~ 301 (1249)
T 3sfz_A 273 VMGPKHVVPVESGLGREKGLEILSLFVNM 301 (1249)
T ss_dssp CCSCBCCEECCSSCCHHHHHHHHHHHHTS
T ss_pred hcCCceEEEecCCCCHHHHHHHHHHhhCC
Confidence 45667899996 9999999999988754
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.85 E-value=2e-21 Score=167.31 Aligned_cols=129 Identities=13% Similarity=0.043 Sum_probs=100.2
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHH--HhccccCc---------Ccc----------
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNK--ITRRFEEF---------PNI---------- 85 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~--~~~~f~~~---------~~~---------- 85 (172)
...+||+.+++.|.++|.... . .++++|+||||+||||||++++++ ++.+|+.. .+.
T Consensus 128 k~~VGRe~eLeeL~elL~~~d-~-~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~l 205 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLELR-P-AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHCC-S-SCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhccC-C-CeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 445999999999999998532 2 689999999999999999999975 67777762 000
Q ss_pred ------------------------cHHHHHHHh---CCCeeEEEEecCCCHHhHHHHHhhccCCCCCcEEEEEeCChhHH
Q 040354 86 ------------------------GLNFQSKRL---TRKKLLIVFDDVHHPRQIDCLIECLDWFASASRIIIISRDKQAL 138 (172)
Q Consensus 86 ------------------------~~~~~~~~l---~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~~s~iiiTtr~~~~~ 138 (172)
....++..+ .++++||||||+|+.++|+.+. +||+||||||++.++
T Consensus 206 L~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va 278 (1221)
T 1vt4_I 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVT 278 (1221)
T ss_dssp HHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHH
T ss_pred HhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHH
Confidence 122344444 5689999999999988887652 789999999999887
Q ss_pred HhcCCCceEEcC------CCCHHHHHHHHhhh
Q 040354 139 ISCGVNKIYQMQ------ELVHADALKLFSEC 164 (172)
Q Consensus 139 ~~~~~~~~~~l~------~l~~~~~~~lf~~~ 164 (172)
..+.....|+++ +|+.+||++||.+.
T Consensus 279 ~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~ 310 (1221)
T 1vt4_I 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310 (1221)
T ss_dssp HHHHHHSSCEEEECSSSSCCCHHHHHHHHHHH
T ss_pred HhcCCCeEEEecCccccCCcCHHHHHHHHHHH
Confidence 544322356666 99999999999887
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.85 E-value=4.1e-21 Score=159.12 Aligned_cols=135 Identities=20% Similarity=0.194 Sum_probs=101.5
Q ss_pred CCCCccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHH---hccccCc--------C---------
Q 040354 24 ENNNHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKI---TRRFEEF--------P--------- 83 (172)
Q Consensus 24 ~~~~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~---~~~f~~~--------~--------- 83 (172)
..+..|+||+.+++.|.++|...... .++++|+|+||+||||||.+++++. ..+|... .
T Consensus 121 ~~~~~~vGR~~~l~~L~~~L~~~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~~l 199 (591)
T 1z6t_A 121 QRPVVFVTRKKLVNAIQQKLSKLKGE-PGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKL 199 (591)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTSTTS-CEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHHHH
T ss_pred CCCCeecccHHHHHHHHHHHhcccCC-CceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHHHHH
Confidence 55678999999999999999854434 7899999999999999999998753 5566422 0
Q ss_pred -------------------cc--cHHHHHHHhCC--CeeEEEEecCCCHHhHHHHHhhccCCCCCcEEEEEeCChhHHHh
Q 040354 84 -------------------NI--GLNFQSKRLTR--KKLLIVFDDVHHPRQIDCLIECLDWFASASRIIIISRDKQALIS 140 (172)
Q Consensus 84 -------------------~~--~~~~~~~~l~~--~~~LlvlDdv~~~~~~~~l~~~~~~~~~~s~iiiTtr~~~~~~~ 140 (172)
+. ....+...+.+ +++||||||+|+..++.. ..++++||+|||+..++..
T Consensus 200 ~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~-------l~~~~~ilvTsR~~~~~~~ 272 (591)
T 1z6t_A 200 QNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKA-------FDSQCQILLTTRDKSVTDS 272 (591)
T ss_dssp HHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHT-------TCSSCEEEEEESCGGGGTT
T ss_pred HHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHH-------hcCCCeEEEECCCcHHHHh
Confidence 00 12333444443 689999999998765542 3578999999999987765
Q ss_pred cCCCceEEc---CCCCHHHHHHHHhhhcCC
Q 040354 141 CGVNKIYQM---QELVHADALKLFSECAFE 167 (172)
Q Consensus 141 ~~~~~~~~l---~~l~~~~~~~lf~~~a~~ 167 (172)
+. ...+++ .+|+.+++++||...++.
T Consensus 273 ~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~ 301 (591)
T 1z6t_A 273 VM-GPKYVVPVESSLGKEKGLEILSLFVNM 301 (591)
T ss_dssp CC-SCEEEEECCSSCCHHHHHHHHHHHHTS
T ss_pred cC-CCceEeecCCCCCHHHHHHHHHHHhCC
Confidence 43 344555 589999999999988765
No 5
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.53 E-value=3e-13 Score=98.87 Aligned_cols=138 Identities=15% Similarity=0.197 Sum_probs=95.8
Q ss_pred CCccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc-----------------------
Q 040354 26 NNHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITRRFEEF----------------------- 82 (172)
Q Consensus 26 ~~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~----------------------- 82 (172)
...++||+..++.+..++..... ...+.|+|++|+||||||+.+++.....+...
T Consensus 22 ~~~~~g~~~~~~~l~~~l~~~~~--~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (250)
T 1njg_A 22 FADVVGQEHVLTALANGLSLGRI--HHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIE 99 (250)
T ss_dssp GGGCCSCHHHHHHHHHHHHHTCC--CSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEE
T ss_pred HHHHhCcHHHHHHHHHHHHcCCC--CeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEE
Confidence 35699999999999999875442 35899999999999999999998854321100
Q ss_pred ---Cc-ccHHHHHHHh--------CCCeeEEEEecCC--CHHhHHHHHhhccCCCCCcEEEEEeCChhHH-Hh-cCCCce
Q 040354 83 ---PN-IGLNFQSKRL--------TRKKLLIVFDDVH--HPRQIDCLIECLDWFASASRIIIISRDKQAL-IS-CGVNKI 146 (172)
Q Consensus 83 ---~~-~~~~~~~~~l--------~~~~~LlvlDdv~--~~~~~~~l~~~~~~~~~~s~iiiTtr~~~~~-~~-~~~~~~ 146 (172)
.. .....+...+ .+++.+||+||++ +...++.+...+.....+..+|+||+..... .. ......
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~~ 179 (250)
T 1njg_A 100 IDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQ 179 (250)
T ss_dssp EETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEE
T ss_pred ecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhhh
Confidence 00 0122233222 2356899999996 4556777777766555677888888764321 11 223467
Q ss_pred EEcCCCCHHHHHHHHhhhc
Q 040354 147 YQMQELVHADALKLFSECA 165 (172)
Q Consensus 147 ~~l~~l~~~~~~~lf~~~a 165 (172)
+++.+++.++..+++.+.+
T Consensus 180 i~l~~l~~~e~~~~l~~~~ 198 (250)
T 1njg_A 180 FHLKALDVEQIRHQLEHIL 198 (250)
T ss_dssp EECCCCCHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHH
Confidence 9999999999999987654
No 6
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.48 E-value=8.9e-13 Score=95.30 Aligned_cols=137 Identities=12% Similarity=0.139 Sum_probs=93.9
Q ss_pred CCccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhcc-ccCc------Ccc-----cHHHHHHH
Q 040354 26 NNHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITRR-FEEF------PNI-----GLNFQSKR 93 (172)
Q Consensus 26 ~~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~-f~~~------~~~-----~~~~~~~~ 93 (172)
-..++|++..++.+.+++.... .+.+.|+|++|+|||++|+.+++.+... +... .+. ....+...
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~---~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (226)
T 2chg_A 16 LDEVVGQDEVIQRLKGYVERKN---IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEF 92 (226)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTC---CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHhCCC---CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHH
Confidence 3678999999999999998654 3359999999999999999999875322 1111 111 22233333
Q ss_pred h------CCCeeEEEEecCCCH--HhHHHHHhhccCCCCCcEEEEEeCChhHH-Hh-cCCCceEEcCCCCHHHHHHHHhh
Q 040354 94 L------TRKKLLIVFDDVHHP--RQIDCLIECLDWFASASRIIIISRDKQAL-IS-CGVNKIYQMQELVHADALKLFSE 163 (172)
Q Consensus 94 l------~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~s~iiiTtr~~~~~-~~-~~~~~~~~l~~l~~~~~~~lf~~ 163 (172)
. ..++.+|++||++.. ...+.+...+.....+.++|+||+..... .. ......+++.+++.++..+++.+
T Consensus 93 ~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~ 172 (226)
T 2chg_A 93 ARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLE 172 (226)
T ss_dssp HTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHH
T ss_pred hcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHH
Confidence 2 246789999999743 44566666665555677888888765321 11 12334789999999999998876
Q ss_pred hc
Q 040354 164 CA 165 (172)
Q Consensus 164 ~a 165 (172)
.+
T Consensus 173 ~~ 174 (226)
T 2chg_A 173 IC 174 (226)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 7
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.45 E-value=3.2e-13 Score=106.81 Aligned_cols=140 Identities=14% Similarity=0.192 Sum_probs=88.3
Q ss_pred CCCCccccccchHHHHHHHh-cC---CC-CCCeeEEEE--EcCCCchHHHHHHHHHHHHhc-------cccCc-------
Q 040354 24 ENNNHLVGIESRTEEIESVL-GV---GS-TMNICKLGI--SGSGDIGKITIAGAIFNKITR-------RFEEF------- 82 (172)
Q Consensus 24 ~~~~~~~Gr~~~~~~l~~~l-~~---~~-~~~~~~i~I--~G~~GiGKTtLa~~~~~~~~~-------~f~~~------- 82 (172)
..+..++||+.+++.+.+++ .. .. .. ...+.| +|++|+||||||+.+++.... .+...
T Consensus 19 ~~p~~l~gR~~el~~l~~~l~~~~~~~~~~~-~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (412)
T 1w5s_A 19 YIPPELRVRRGEAEALARIYLNRLLSGAGLS-DVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNA 97 (412)
T ss_dssp CCCSSCSSSCHHHHHHHHHHHHHHHTSSCBC-CEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGC
T ss_pred cCCCCCCChHHHHHHHHHHHhHHHhcCCCCC-CCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCC
Confidence 44578999999999999988 41 20 12 467777 999999999999999988543 11111
Q ss_pred Cc--------------------c----cHHHHHHHhC--CCeeEEEEecCCCH--------HhHHHHHhhccCC---C--
Q 040354 83 PN--------------------I----GLNFQSKRLT--RKKLLIVFDDVHHP--------RQIDCLIECLDWF---A-- 123 (172)
Q Consensus 83 ~~--------------------~----~~~~~~~~l~--~~~~LlvlDdv~~~--------~~~~~l~~~~~~~---~-- 123 (172)
.+ . ....+...+. +++++|||||++.. +.+..+...+... .
T Consensus 98 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~ 177 (412)
T 1w5s_A 98 PNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGV 177 (412)
T ss_dssp CSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSC
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCC
Confidence 00 0 1223333333 56899999999753 3344333333221 1
Q ss_pred CCcEEEEEeCChhHHHhc---------CCCceEEcCCCCHHHHHHHHhhh
Q 040354 124 SASRIIIISRDKQALISC---------GVNKIYQMQELVHADALKLFSEC 164 (172)
Q Consensus 124 ~~s~iiiTtr~~~~~~~~---------~~~~~~~l~~l~~~~~~~lf~~~ 164 (172)
....+|+||+...+...+ .....+++.+++.++++++|...
T Consensus 178 ~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~ 227 (412)
T 1w5s_A 178 NRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQR 227 (412)
T ss_dssp CBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHH
T ss_pred ceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHH
Confidence 334577788765432111 11233999999999999999654
No 8
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.41 E-value=1.2e-12 Score=101.35 Aligned_cols=134 Identities=12% Similarity=0.147 Sum_probs=86.6
Q ss_pred CCCCccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhccc---cCcC-------c---------
Q 040354 24 ENNNHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITRRF---EEFP-------N--------- 84 (172)
Q Consensus 24 ~~~~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f---~~~~-------~--------- 84 (172)
..+..|+||+.+++.|.+ +.. +++.|+|++|+|||+|++.+.+.....+ +... +
T Consensus 10 ~~~~~~~gR~~el~~L~~-l~~------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (357)
T 2fna_A 10 DNRKDFFDREKEIEKLKG-LRA------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQ 82 (357)
T ss_dssp CSGGGSCCCHHHHHHHHH-TCS------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCCHHHHHHHHH
T ss_pred CCHHHhcChHHHHHHHHH-hcC------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCCHHHHHHHHH
Confidence 456789999999999999 754 4899999999999999999988743221 0000 0
Q ss_pred --------------------------------------c-cHHHHHHHhCC---CeeEEEEecCCCHH-----hHHHHHh
Q 040354 85 --------------------------------------I-GLNFQSKRLTR---KKLLIVFDDVHHPR-----QIDCLIE 117 (172)
Q Consensus 85 --------------------------------------~-~~~~~~~~l~~---~~~LlvlDdv~~~~-----~~~~l~~ 117 (172)
. ....+...+.. ++++|||||++..+ ++..++.
T Consensus 83 ~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~~l~ 162 (357)
T 2fna_A 83 KEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPALA 162 (357)
T ss_dssp HHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHHHH
T ss_pred HHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHHHHH
Confidence 0 01112222221 48999999996432 2222222
Q ss_pred hccCCCCCcEEEEEeCChhHHHh----------c-CC-CceEEcCCCCHHHHHHHHhhh
Q 040354 118 CLDWFASASRIIIISRDKQALIS----------C-GV-NKIYQMQELVHADALKLFSEC 164 (172)
Q Consensus 118 ~~~~~~~~s~iiiTtr~~~~~~~----------~-~~-~~~~~l~~l~~~~~~~lf~~~ 164 (172)
.+....++.++|+|++....... + +. ...+++.+|+.+++.+++...
T Consensus 163 ~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~ 221 (357)
T 2fna_A 163 YAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRG 221 (357)
T ss_dssp HHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHH
T ss_pred HHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHH
Confidence 22212246789999997653221 1 11 257899999999999988763
No 9
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.41 E-value=1.6e-12 Score=101.59 Aligned_cols=140 Identities=15% Similarity=0.115 Sum_probs=91.0
Q ss_pred CCCCccccccchHHHHHHHhcCC--CCCCeeEEEEEcCCCchHHHHHHHHHHHHhccc----cCc-------C-------
Q 040354 24 ENNNHLVGIESRTEEIESVLGVG--STMNICKLGISGSGDIGKITIAGAIFNKITRRF----EEF-------P------- 83 (172)
Q Consensus 24 ~~~~~~~Gr~~~~~~l~~~l~~~--~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f----~~~-------~------- 83 (172)
..+..|+||+.+++.+.+++... ... ...+.|+|++|+||||||+.+++.....+ ... .
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~~~~-~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 95 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYREEK-PNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLA 95 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGGTCC-CCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcCCC-CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHH
Confidence 45588999999999999988742 222 57899999999999999999998754321 111 0
Q ss_pred ---------------cc--cHHHHHHHhC--CCeeEEEEecCCCH------HhHHHHHhhccC-CCCCcEEEEEeCChhH
Q 040354 84 ---------------NI--GLNFQSKRLT--RKKLLIVFDDVHHP------RQIDCLIECLDW-FASASRIIIISRDKQA 137 (172)
Q Consensus 84 ---------------~~--~~~~~~~~l~--~~~~LlvlDdv~~~------~~~~~l~~~~~~-~~~~s~iiiTtr~~~~ 137 (172)
+. ....+...+. +++.+||||+++.. ..+..+...... ...+..+|++|++...
T Consensus 96 ~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~ 175 (386)
T 2qby_A 96 DLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKF 175 (386)
T ss_dssp HHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGG
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCCh
Confidence 01 1233333333 34789999999643 234444433322 1235567888876643
Q ss_pred HHhcC-------CCceEEcCCCCHHHHHHHHhhh
Q 040354 138 LISCG-------VNKIYQMQELVHADALKLFSEC 164 (172)
Q Consensus 138 ~~~~~-------~~~~~~l~~l~~~~~~~lf~~~ 164 (172)
...+. ....+.+++++.++..+++.+.
T Consensus 176 ~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~ 209 (386)
T 2qby_A 176 VDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKR 209 (386)
T ss_dssp GGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHH
T ss_pred HhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHH
Confidence 32221 1247999999999999998764
No 10
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.38 E-value=4.1e-12 Score=99.40 Aligned_cols=139 Identities=14% Similarity=0.091 Sum_probs=88.4
Q ss_pred CCCCccccccchHHHHHHHhcCC--CCCCeeEEEEEcCCCchHHHHHHHHHHHHhc-------cccCc----Cc------
Q 040354 24 ENNNHLVGIESRTEEIESVLGVG--STMNICKLGISGSGDIGKITIAGAIFNKITR-------RFEEF----PN------ 84 (172)
Q Consensus 24 ~~~~~~~Gr~~~~~~l~~~l~~~--~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~-------~f~~~----~~------ 84 (172)
..++.++||+.+++.+..++... ... .+.+.|+|++|+||||+|+.+++.... .+... ..
T Consensus 16 ~~p~~~~gr~~~~~~l~~~l~~~~~~~~-~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 94 (387)
T 2v1u_A 16 YVPDVLPHREAELRRLAEVLAPALRGEK-PSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYR 94 (387)
T ss_dssp CCCSCCTTCHHHHHHHHHTTGGGTSSCC-CCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHcCCC-CCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHH
Confidence 34578999999999999988532 222 578999999999999999999988532 21111 00
Q ss_pred -------------------c--cHHHHHHHhC--CCeeEEEEecCCCHH----hHHHHHhhccCC-----CCCcEEEEEe
Q 040354 85 -------------------I--GLNFQSKRLT--RKKLLIVFDDVHHPR----QIDCLIECLDWF-----ASASRIIIIS 132 (172)
Q Consensus 85 -------------------~--~~~~~~~~l~--~~~~LlvlDdv~~~~----~~~~l~~~~~~~-----~~~s~iiiTt 132 (172)
. ....+...+. +++.+|+|||++... ..+.+...+.+. ..+..+|.+|
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t 174 (387)
T 2v1u_A 95 VASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGIT 174 (387)
T ss_dssp HHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEEC
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEE
Confidence 0 1233333442 357899999998543 223333222221 3455677777
Q ss_pred CChhH--------HHhcCCCceEEcCCCCHHHHHHHHhhh
Q 040354 133 RDKQA--------LISCGVNKIYQMQELVHADALKLFSEC 164 (172)
Q Consensus 133 r~~~~--------~~~~~~~~~~~l~~l~~~~~~~lf~~~ 164 (172)
+.... ...+ ....+.+++++.++..+++...
T Consensus 175 ~~~~~~~~l~~~l~~r~-~~~~i~l~~l~~~~~~~il~~~ 213 (387)
T 2v1u_A 175 NSLGFVENLEPRVKSSL-GEVELVFPPYTAPQLRDILETR 213 (387)
T ss_dssp SCSTTSSSSCHHHHTTT-TSEECCBCCCCHHHHHHHHHHH
T ss_pred CCCchHhhhCHHHHhcC-CCeEEeeCCCCHHHHHHHHHHH
Confidence 76522 1111 1247899999999999998765
No 11
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.37 E-value=1e-11 Score=97.33 Aligned_cols=137 Identities=14% Similarity=0.073 Sum_probs=89.2
Q ss_pred CCccccccchHHHHHHHhcC--CCCCCeeEEEEEcCCCchHHHHHHHHHHHHhcc---------ccCc-------C-cc-
Q 040354 26 NNHLVGIESRTEEIESVLGV--GSTMNICKLGISGSGDIGKITIAGAIFNKITRR---------FEEF-------P-NI- 85 (172)
Q Consensus 26 ~~~~~Gr~~~~~~l~~~l~~--~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~---------f~~~-------~-~~- 85 (172)
++.++||+.+++.+..++.. .... .+.+.|+|++|+|||+||+.+++..... +... . +.
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~-~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 97 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEV-KFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQ 97 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCC-CCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCC-CCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHH
Confidence 47899999999999887763 2222 5789999999999999999999875221 1110 1 10
Q ss_pred ------------------------cHHHHHHHhCCCeeEEEEecCCCHHh---HHH-HHhhccCCCCCcEEEEEeCChhH
Q 040354 86 ------------------------GLNFQSKRLTRKKLLIVFDDVHHPRQ---IDC-LIECLDWFASASRIIIISRDKQA 137 (172)
Q Consensus 86 ------------------------~~~~~~~~l~~~~~LlvlDdv~~~~~---~~~-l~~~~~~~~~~s~iiiTtr~~~~ 137 (172)
....+...+...+.+|||||++.... .+. +...+... .+..+|+||+....
T Consensus 98 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~~~ 176 (384)
T 2qby_B 98 AVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDINV 176 (384)
T ss_dssp HHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSSTTT
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCCch
Confidence 12233344555555999999975432 222 22222222 67788888886532
Q ss_pred H----Hhc--CCCceEEcCCCCHHHHHHHHhhh
Q 040354 138 L----ISC--GVNKIYQMQELVHADALKLFSEC 164 (172)
Q Consensus 138 ~----~~~--~~~~~~~l~~l~~~~~~~lf~~~ 164 (172)
. ..+ .....+++++++.++..++|...
T Consensus 177 ~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~ 209 (384)
T 2qby_B 177 RDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKY 209 (384)
T ss_dssp TTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHH
T ss_pred HhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHH
Confidence 1 111 11238999999999999999876
No 12
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.36 E-value=2.4e-12 Score=99.47 Aligned_cols=135 Identities=12% Similarity=0.178 Sum_probs=87.2
Q ss_pred CCCCccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHh-------ccc------cC---------
Q 040354 24 ENNNHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKIT-------RRF------EE--------- 81 (172)
Q Consensus 24 ~~~~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~-------~~f------~~--------- 81 (172)
..+..|+||+.+++.|.+++... +.+.|+|++|+|||||++++.+... ... +.
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~~-----~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 83 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLENY-----PLTLLLGIRRVGKSSLLRAFLNERPGILIDCRELYAERGHITREELIKELQS 83 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHHC-----SEEEEECCTTSSHHHHHHHHHHHSSEEEEEHHHHHHTTTCBCHHHHHHHHHH
T ss_pred CChHhcCChHHHHHHHHHHHhcC-----CeEEEECCCcCCHHHHHHHHHHHcCcEEEEeecccccccCCCHHHHHHHHHH
Confidence 55678999999999999988742 5899999999999999999887521 000 00
Q ss_pred --------------------c------Ccc--cHHHHHHHhCC-CeeEEEEecCCCHH--------h-HHHHHhhccCCC
Q 040354 82 --------------------F------PNI--GLNFQSKRLTR-KKLLIVFDDVHHPR--------Q-IDCLIECLDWFA 123 (172)
Q Consensus 82 --------------------~------~~~--~~~~~~~~l~~-~~~LlvlDdv~~~~--------~-~~~l~~~~~~~~ 123 (172)
. .++ ....+...... ++++||+||++... . +..+...... .
T Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~-~ 162 (350)
T 2qen_A 84 TISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDS-L 162 (350)
T ss_dssp HSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHH-C
T ss_pred HHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHHh-c
Confidence 0 000 11222222221 38999999997532 2 3333322222 2
Q ss_pred CCcEEEEEeCChhHHHhc-----------C-CCceEEcCCCCHHHHHHHHhhh
Q 040354 124 SASRIIIISRDKQALISC-----------G-VNKIYQMQELVHADALKLFSEC 164 (172)
Q Consensus 124 ~~s~iiiTtr~~~~~~~~-----------~-~~~~~~l~~l~~~~~~~lf~~~ 164 (172)
++.++|+|++.......+ + ....+++.+|+.+|+.+++...
T Consensus 163 ~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~ 215 (350)
T 2qen_A 163 PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRG 215 (350)
T ss_dssp TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHH
T ss_pred CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHH
Confidence 577899998876532211 1 1247899999999999988753
No 13
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.33 E-value=1.3e-11 Score=94.48 Aligned_cols=135 Identities=15% Similarity=0.236 Sum_probs=91.9
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhc-cc-------cCcCcc----cHHHHHHHh
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITR-RF-------EEFPNI----GLNFQSKRL 94 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~-~f-------~~~~~~----~~~~~~~~l 94 (172)
..++|++..++.+.+++..... +.+.|+|++|+|||++|+.+++.+.. .+ +..+.. ....+....
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~~---~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGNM---PHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQIKHFA 97 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCCC---CCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHHHTHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHcCCC---CeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHHHHHHHHHH
Confidence 6689999999999999886542 33999999999999999999988522 11 111111 222222222
Q ss_pred -------CCCeeEEEEecCCC--HHhHHHHHhhccCCCCCcEEEEEeCChhH-HHh-cCCCceEEcCCCCHHHHHHHHhh
Q 040354 95 -------TRKKLLIVFDDVHH--PRQIDCLIECLDWFASASRIIIISRDKQA-LIS-CGVNKIYQMQELVHADALKLFSE 163 (172)
Q Consensus 95 -------~~~~~LlvlDdv~~--~~~~~~l~~~~~~~~~~s~iiiTtr~~~~-~~~-~~~~~~~~l~~l~~~~~~~lf~~ 163 (172)
.+++.++|+||++. ...++.+...+.....++++|++|....- ... ......+++.+++.++..+++..
T Consensus 98 ~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~ 177 (323)
T 1sxj_B 98 QKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQ 177 (323)
T ss_dssp HBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHH
T ss_pred hccccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHH
Confidence 33578999999974 34455566555555567788888866431 111 23345899999999999998876
Q ss_pred h
Q 040354 164 C 164 (172)
Q Consensus 164 ~ 164 (172)
.
T Consensus 178 ~ 178 (323)
T 1sxj_B 178 I 178 (323)
T ss_dssp H
T ss_pred H
Confidence 4
No 14
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.33 E-value=4.5e-12 Score=89.53 Aligned_cols=131 Identities=11% Similarity=0.066 Sum_probs=81.5
Q ss_pred CCccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhcc--------ccCc----------Ccc--
Q 040354 26 NNHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITRR--------FEEF----------PNI-- 85 (172)
Q Consensus 26 ~~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~--------f~~~----------~~~-- 85 (172)
-..++||+++++.+.+++.... .+.+.|+|++|+|||+||+.+++.+... .... ...
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~---~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQRRT---KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRG 97 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSS---SCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHH
T ss_pred ccccccchHHHHHHHHHHhcCC---CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccc
Confidence 3679999999999999987643 4578999999999999999999985321 1000 000
Q ss_pred -cHHHHHHHh-----CCCeeEEEEecCCCHH---------h-HHHHHhhccCCCCCcEEEEEeCChhHHHh-------cC
Q 040354 86 -GLNFQSKRL-----TRKKLLIVFDDVHHPR---------Q-IDCLIECLDWFASASRIIIISRDKQALIS-------CG 142 (172)
Q Consensus 86 -~~~~~~~~l-----~~~~~LlvlDdv~~~~---------~-~~~l~~~~~~~~~~s~iiiTtr~~~~~~~-------~~ 142 (172)
....+...+ .+++.+|+|||++... . ...+...+. . ....+|.+|........ ..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~-~-~~~~~i~~~~~~~~~~~~~~~~~l~~ 175 (195)
T 1jbk_A 98 EFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA-R-GELHCVGATTLDEYRQYIEKDAALER 175 (195)
T ss_dssp HHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHH-T-TSCCEEEEECHHHHHHHTTTCHHHHT
T ss_pred cHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhc-c-CCeEEEEeCCHHHHHHHHhcCHHHHH
Confidence 111222222 2457899999997542 1 333332222 1 33456777665442211 12
Q ss_pred CCceEEcCCCCHHHHHHHH
Q 040354 143 VNKIYQMQELVHADALKLF 161 (172)
Q Consensus 143 ~~~~~~l~~l~~~~~~~lf 161 (172)
....+.+.+++.++..+++
T Consensus 176 r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 176 RFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp TEEEEECCCCCHHHHHTTC
T ss_pred HhceeecCCCCHHHHHHHh
Confidence 2236889999999887765
No 15
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.30 E-value=4.3e-11 Score=93.81 Aligned_cols=141 Identities=11% Similarity=0.144 Sum_probs=91.6
Q ss_pred CCCCccccccchHHHHHHHhcC---CCCCCeeEEEEEcCCCchHHHHHHHHHHHHhcc--ccCc----Ccc---------
Q 040354 24 ENNNHLVGIESRTEEIESVLGV---GSTMNICKLGISGSGDIGKITIAGAIFNKITRR--FEEF----PNI--------- 85 (172)
Q Consensus 24 ~~~~~~~Gr~~~~~~l~~~l~~---~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~--f~~~----~~~--------- 85 (172)
..++.++||+.+++.+..++.. ......+.+.|+|++|+|||||++.+++..... +... ...
T Consensus 14 ~~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 93 (389)
T 1fnn_A 14 YVPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGE 93 (389)
T ss_dssp CCCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHH
Confidence 3457899999999999998874 222213489999999999999999999886432 1111 000
Q ss_pred ------------------cHHHHHHHhC--CCeeEEEEecCCC--HHhHHHHHhhccCCC----CCcEEEEEeCChhHHH
Q 040354 86 ------------------GLNFQSKRLT--RKKLLIVFDDVHH--PRQIDCLIECLDWFA----SASRIIIISRDKQALI 139 (172)
Q Consensus 86 ------------------~~~~~~~~l~--~~~~LlvlDdv~~--~~~~~~l~~~~~~~~----~~s~iiiTtr~~~~~~ 139 (172)
....+...+. +++.+|+||+++. ...+..+...+.... .+..+|++|++..+..
T Consensus 94 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~ 173 (389)
T 1fnn_A 94 IARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLN 173 (389)
T ss_dssp HHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHH
T ss_pred HHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHH
Confidence 1112222222 4578999999974 344555554443222 3567888887664333
Q ss_pred hcC-------CCceEEcCCCCHHHHHHHHhhh
Q 040354 140 SCG-------VNKIYQMQELVHADALKLFSEC 164 (172)
Q Consensus 140 ~~~-------~~~~~~l~~l~~~~~~~lf~~~ 164 (172)
.+. ....+.+.+++.++..+++...
T Consensus 174 ~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~ 205 (389)
T 1fnn_A 174 NLDPSTRGIMGKYVIRFSPYTKDQIFDILLDR 205 (389)
T ss_dssp TSCHHHHHHHTTCEEECCCCBHHHHHHHHHHH
T ss_pred HhCHHhhhcCCCceEEeCCCCHHHHHHHHHHH
Confidence 221 1236999999999999988765
No 16
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.26 E-value=4.7e-11 Score=91.47 Aligned_cols=137 Identities=19% Similarity=0.224 Sum_probs=93.3
Q ss_pred CCccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhcc-----ccCc--Ccc-----cHHHHHHH
Q 040354 26 NNHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITRR-----FEEF--PNI-----GLNFQSKR 93 (172)
Q Consensus 26 ~~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~-----f~~~--~~~-----~~~~~~~~ 93 (172)
-..++|++..++.+.+++.... .+.+.|+|++|+||||+|+.+++.+... |... .+. ....+...
T Consensus 24 ~~~~~g~~~~~~~l~~~l~~~~---~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (327)
T 1iqp_A 24 LDDIVGQEHIVKRLKHYVKTGS---MPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEF 100 (327)
T ss_dssp TTTCCSCHHHHHHHHHHHHHTC---CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTHHHHHHH
T ss_pred HHHhhCCHHHHHHHHHHHHcCC---CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHHHHHHHHH
Confidence 3679999999999999988654 3349999999999999999999885321 1111 111 22233332
Q ss_pred h-----C-CCeeEEEEecCCC--HHhHHHHHhhccCCCCCcEEEEEeCChhH-HHhc-CCCceEEcCCCCHHHHHHHHhh
Q 040354 94 L-----T-RKKLLIVFDDVHH--PRQIDCLIECLDWFASASRIIIISRDKQA-LISC-GVNKIYQMQELVHADALKLFSE 163 (172)
Q Consensus 94 l-----~-~~~~LlvlDdv~~--~~~~~~l~~~~~~~~~~s~iiiTtr~~~~-~~~~-~~~~~~~l~~l~~~~~~~lf~~ 163 (172)
. . +++.++|+|+++. ...++.+...+.....++++|+|+..... ...+ .....+++.+++.++..+++..
T Consensus 101 ~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~ 180 (327)
T 1iqp_A 101 ARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRY 180 (327)
T ss_dssp HHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHH
T ss_pred HhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHH
Confidence 2 1 4578999999974 35567777666655567888888866431 1111 1234789999999999998876
Q ss_pred hc
Q 040354 164 CA 165 (172)
Q Consensus 164 ~a 165 (172)
.+
T Consensus 181 ~~ 182 (327)
T 1iqp_A 181 IA 182 (327)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 17
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.24 E-value=5.2e-11 Score=89.98 Aligned_cols=142 Identities=15% Similarity=0.158 Sum_probs=89.2
Q ss_pred CCCCccccccchHHHHHHHhcCC-----------CCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc------Ccc-
Q 040354 24 ENNNHLVGIESRTEEIESVLGVG-----------STMNICKLGISGSGDIGKITIAGAIFNKITRRFEEF------PNI- 85 (172)
Q Consensus 24 ~~~~~~~Gr~~~~~~l~~~l~~~-----------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~------~~~- 85 (172)
..-+.++|.+..++.|.+++... ... ...+.|+|++|+|||+||+.+++.....|... ...
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~ 92 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEP-PKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFI 92 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCC-CSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCST
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCC-CCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhcc
Confidence 34467899999999998877421 112 46799999999999999999999865544332 111
Q ss_pred ------cHHHHHHHhCCCeeEEEEecCCCH----------------HhHHHHHhhccC--CCCCcEEEEEeCChhHHHh-
Q 040354 86 ------GLNFQSKRLTRKKLLIVFDDVHHP----------------RQIDCLIECLDW--FASASRIIIISRDKQALIS- 140 (172)
Q Consensus 86 ------~~~~~~~~l~~~~~LlvlDdv~~~----------------~~~~~l~~~~~~--~~~~s~iiiTtr~~~~~~~- 140 (172)
....+.......+.+|+|||++.. ..+..+...+.. ...+..||.||........
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~ 172 (285)
T 3h4m_A 93 GEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPA 172 (285)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHH
T ss_pred chHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHH
Confidence 122222333345689999999643 112333333322 2235567777765432211
Q ss_pred -c---CCCceEEcCCCCHHHHHHHHhhhcC
Q 040354 141 -C---GVNKIYQMQELVHADALKLFSECAF 166 (172)
Q Consensus 141 -~---~~~~~~~l~~l~~~~~~~lf~~~a~ 166 (172)
. .....+.+...+.++..++|.....
T Consensus 173 l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~ 202 (285)
T 3h4m_A 173 ILRPGRFDRIIEVPAPDEKGRLEILKIHTR 202 (285)
T ss_dssp HHSTTSEEEEEECCCCCHHHHHHHHHHHHT
T ss_pred HcCCCcCCeEEEECCCCHHHHHHHHHHHHh
Confidence 1 1234689999999999999877643
No 18
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.21 E-value=6.5e-10 Score=86.73 Aligned_cols=136 Identities=14% Similarity=0.185 Sum_probs=92.0
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhcccc----------------------Cc--
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITRRFE----------------------EF-- 82 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~----------------------~~-- 82 (172)
..++|++..++.+..++..... ...+.|+|++|+||||+|+.+++.+..... ..
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~~--~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGRI--HHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEI 93 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTCC--CSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEE
T ss_pred hhccCcHHHHHHHHHHHHhCCC--CeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEe
Confidence 5699999999999998875442 357899999999999999999987532110 00
Q ss_pred --Cc-c---cHHHHHHHhC-----CCeeEEEEecCCC--HHhHHHHHhhccCCCCCcEEEEEeCChh-HHHh-cCCCceE
Q 040354 83 --PN-I---GLNFQSKRLT-----RKKLLIVFDDVHH--PRQIDCLIECLDWFASASRIIIISRDKQ-ALIS-CGVNKIY 147 (172)
Q Consensus 83 --~~-~---~~~~~~~~l~-----~~~~LlvlDdv~~--~~~~~~l~~~~~~~~~~s~iiiTtr~~~-~~~~-~~~~~~~ 147 (172)
.+ . ....+...+. +++.++|+||++. ...++.+...+........+|++|.... +... ......+
T Consensus 94 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i 173 (373)
T 1jr3_A 94 DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQF 173 (373)
T ss_dssp ETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred cccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhheeEe
Confidence 00 1 1223333322 3567999999963 4557777777665556677777776443 1111 2334689
Q ss_pred EcCCCCHHHHHHHHhhh
Q 040354 148 QMQELVHADALKLFSEC 164 (172)
Q Consensus 148 ~l~~l~~~~~~~lf~~~ 164 (172)
++.+++.++..+++.+.
T Consensus 174 ~~~~l~~~~~~~~l~~~ 190 (373)
T 1jr3_A 174 HLKALDVEQIRHQLEHI 190 (373)
T ss_dssp ECCCCCHHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHH
Confidence 99999999999888654
No 19
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.20 E-value=1.8e-10 Score=87.90 Aligned_cols=137 Identities=15% Similarity=0.172 Sum_probs=91.6
Q ss_pred CCccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHh-cc----ccCc---C--cc--cHHHHHHH
Q 040354 26 NNHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKIT-RR----FEEF---P--NI--GLNFQSKR 93 (172)
Q Consensus 26 ~~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~-~~----f~~~---~--~~--~~~~~~~~ 93 (172)
-..++|++..++.+.+++.... .+.+.|+|++|+|||++|+.+++.+. .. |-.. . .. ....+...
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~---~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (319)
T 2chq_A 16 LDEVVGQDEVIQRLKGYVERKN---IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEF 92 (319)
T ss_dssp GGGSCSCHHHHHHHHTTTTTTC---CCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTSSHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHhCCC---CCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHHHHHHHHH
Confidence 3568999999999999887644 23489999999999999999998842 21 1111 1 11 22333332
Q ss_pred h------CCCeeEEEEecCCC--HHhHHHHHhhccCCCCCcEEEEEeCChh-HHHh-cCCCceEEcCCCCHHHHHHHHhh
Q 040354 94 L------TRKKLLIVFDDVHH--PRQIDCLIECLDWFASASRIIIISRDKQ-ALIS-CGVNKIYQMQELVHADALKLFSE 163 (172)
Q Consensus 94 l------~~~~~LlvlDdv~~--~~~~~~l~~~~~~~~~~s~iiiTtr~~~-~~~~-~~~~~~~~l~~l~~~~~~~lf~~ 163 (172)
. .+++.++|+|+++. ....+.+...+......+++|++|.... +... ......+++.+++.++..+++..
T Consensus 93 ~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~ 172 (319)
T 2chq_A 93 ARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLE 172 (319)
T ss_dssp HHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHH
T ss_pred HhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHH
Confidence 2 24578999999974 3445666666655556777888776543 1111 12345799999999999888775
Q ss_pred hc
Q 040354 164 CA 165 (172)
Q Consensus 164 ~a 165 (172)
.+
T Consensus 173 ~~ 174 (319)
T 2chq_A 173 IC 174 (319)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 20
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.17 E-value=1.3e-10 Score=90.89 Aligned_cols=158 Identities=14% Similarity=0.094 Sum_probs=91.7
Q ss_pred hHHHHHHHHHHHHhccccCCCCCCCccccccchHHHHHHHhcC----------CCCCCeeEEEEEcCCCchHHHHHHHHH
Q 040354 3 SKLIDEIFKEVLDWLDDTFQTENNNHLVGIESRTEEIESVLGV----------GSTMNICKLGISGSGDIGKITIAGAIF 72 (172)
Q Consensus 3 ~~~~~~i~~~v~~~~~~~~~~~~~~~~~Gr~~~~~~l~~~l~~----------~~~~~~~~i~I~G~~GiGKTtLa~~~~ 72 (172)
+.+++.+..++..+.+. ..-+.++|.+..++.|.+.+.. .... .+.+.|+|++|+|||+||+.++
T Consensus 64 ~~~~~~i~~~i~~~~~~----~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~-~~~vLl~GppGtGKT~la~aia 138 (357)
T 3d8b_A 64 PKMIELIMNEIMDHGPP----VNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGP-PKGILLFGPPGTGKTLIGKCIA 138 (357)
T ss_dssp HHHHHHHHHHTBCCSCC----CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSC-CSEEEEESSTTSSHHHHHHHHH
T ss_pred hHHHHHHHhhcccCCCC----CCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCC-CceEEEECCCCCCHHHHHHHHH
Confidence 34455555554433222 3336799999999998887642 1112 5789999999999999999999
Q ss_pred HHHhccccCc--Ccc-----------cHHHHHHHhCCCeeEEEEecCCCH-------------HhHHHHHhhccCC----
Q 040354 73 NKITRRFEEF--PNI-----------GLNFQSKRLTRKKLLIVFDDVHHP-------------RQIDCLIECLDWF---- 122 (172)
Q Consensus 73 ~~~~~~f~~~--~~~-----------~~~~~~~~l~~~~~LlvlDdv~~~-------------~~~~~l~~~~~~~---- 122 (172)
+.....|-.. .++ ....+.......+.+|+||+++.. ..+..++..+...
T Consensus 139 ~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 218 (357)
T 3d8b_A 139 SQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSS 218 (357)
T ss_dssp HHTTCEEEEEEGGGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----C
T ss_pred HHcCCeEEEEehHHhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccC
Confidence 8865444322 111 111222222345789999999532 1133444333321
Q ss_pred CCCcEEEEEeCChh-HHHhc--CCCceEEcCCCCHHHHHHHHhhhc
Q 040354 123 ASASRIIIISRDKQ-ALISC--GVNKIYQMQELVHADALKLFSECA 165 (172)
Q Consensus 123 ~~~s~iiiTtr~~~-~~~~~--~~~~~~~l~~l~~~~~~~lf~~~a 165 (172)
..+..||.||.... +...+ .....+.+...+.++..+++...+
T Consensus 219 ~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~ 264 (357)
T 3d8b_A 219 EDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLM 264 (357)
T ss_dssp CCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHH
T ss_pred CCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHH
Confidence 23445565665432 11111 233467888899888888776543
No 21
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.12 E-value=5.2e-10 Score=85.33 Aligned_cols=135 Identities=11% Similarity=0.180 Sum_probs=86.0
Q ss_pred ccccccchHHHHHHHhcCC------------CCCCeeEEEEEcCCCchHHHHHHHHHHHHhcc-------ccCc--Cc--
Q 040354 28 HLVGIESRTEEIESVLGVG------------STMNICKLGISGSGDIGKITIAGAIFNKITRR-------FEEF--PN-- 84 (172)
Q Consensus 28 ~~~Gr~~~~~~l~~~l~~~------------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~-------f~~~--~~-- 84 (172)
.++|.+...+.+.+++... .......+.|+|++|+|||++|+.+++.+... |-.. .+
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 4789998888887655410 01114679999999999999999998885331 1111 11
Q ss_pred --c---cHHHHHHHhCC-CeeEEEEecCC-----------CHHhHHHHHhhccCCCCCcEEEEEeCChh----------H
Q 040354 85 --I---GLNFQSKRLTR-KKLLIVFDDVH-----------HPRQIDCLIECLDWFASASRIIIISRDKQ----------A 137 (172)
Q Consensus 85 --~---~~~~~~~~l~~-~~~LlvlDdv~-----------~~~~~~~l~~~~~~~~~~s~iiiTtr~~~----------~ 137 (172)
+ ....+...+.. ...+|+||+++ .......+...+.....+..+|.||.... +
T Consensus 112 ~~~~g~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l 191 (309)
T 3syl_A 112 GQYIGHTAPKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGF 191 (309)
T ss_dssp CSSTTCHHHHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTH
T ss_pred hhcccccHHHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHH
Confidence 1 12222222221 45699999997 33445666666665556677888876432 1
Q ss_pred HHhcCCCceEEcCCCCHHHHHHHHhhh
Q 040354 138 LISCGVNKIYQMQELVHADALKLFSEC 164 (172)
Q Consensus 138 ~~~~~~~~~~~l~~l~~~~~~~lf~~~ 164 (172)
... ....+.+++++.++..+++.+.
T Consensus 192 ~~R--~~~~i~~~~~~~~~~~~il~~~ 216 (309)
T 3syl_A 192 RSR--IAHHIEFPDYSDEELFEIAGHM 216 (309)
T ss_dssp HHH--EEEEEEECCCCHHHHHHHHHHH
T ss_pred HHh--CCeEEEcCCcCHHHHHHHHHHH
Confidence 222 2257899999999999888654
No 22
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.12 E-value=1.7e-09 Score=80.43 Aligned_cols=139 Identities=10% Similarity=0.134 Sum_probs=82.1
Q ss_pred CccccccchHHHHHHHhc---CCCC------CCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc--Ccc----------
Q 040354 27 NHLVGIESRTEEIESVLG---VGST------MNICKLGISGSGDIGKITIAGAIFNKITRRFEEF--PNI---------- 85 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~---~~~~------~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~--~~~---------- 85 (172)
++++|.+...+.+.+++. .... ...+.+.|+|++|+|||++|+.+++.....|... .++
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAA 85 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccChhHH
Confidence 568899888877766543 1110 1146789999999999999999999865544322 111
Q ss_pred -cHHHHHHHhCCCeeEEEEecCCCH-----------------HhHHHHHhhccCCC--CCcEEEEEeCChhHH-Hhc---
Q 040354 86 -GLNFQSKRLTRKKLLIVFDDVHHP-----------------RQIDCLIECLDWFA--SASRIIIISRDKQAL-ISC--- 141 (172)
Q Consensus 86 -~~~~~~~~l~~~~~LlvlDdv~~~-----------------~~~~~l~~~~~~~~--~~s~iiiTtr~~~~~-~~~--- 141 (172)
....+.......+.+|+||+++.. ..+..+...+.... .+..+|.||...... ..+
T Consensus 86 ~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~ 165 (262)
T 2qz4_A 86 RVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRP 165 (262)
T ss_dssp HHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGST
T ss_pred HHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcC
Confidence 122222333345789999999754 11233443333222 345566666544321 111
Q ss_pred -CCCceEEcCCCCHHHHHHHHhhhc
Q 040354 142 -GVNKIYQMQELVHADALKLFSECA 165 (172)
Q Consensus 142 -~~~~~~~l~~l~~~~~~~lf~~~a 165 (172)
.....+.+...+.++..+++...+
T Consensus 166 ~R~~~~i~i~~p~~~~r~~il~~~~ 190 (262)
T 2qz4_A 166 GRLDRHVFIDLPTLQERREIFEQHL 190 (262)
T ss_dssp TSCCEEEECCSCCHHHHHHHHHHHH
T ss_pred CcCCeEEEeCCcCHHHHHHHHHHHH
Confidence 123578899999999988887643
No 23
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.12 E-value=3.5e-10 Score=90.98 Aligned_cols=135 Identities=15% Similarity=0.241 Sum_probs=85.1
Q ss_pred CCccccccchH---HHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCcC--cccHHHHH--------H
Q 040354 26 NNHLVGIESRT---EEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITRRFEEFP--NIGLNFQS--------K 92 (172)
Q Consensus 26 ~~~~~Gr~~~~---~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~--~~~~~~~~--------~ 92 (172)
-+.++|.+..+ ..+...+.... ...+.|+|++|+||||||+.+++.....|.... ......++ .
T Consensus 25 l~~ivGq~~~~~~~~~L~~~i~~~~---~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~~~~~ir~~~~~a~~~ 101 (447)
T 3pvs_A 25 LAQYIGQQHLLAAGKPLPRAIEAGH---LHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQN 101 (447)
T ss_dssp TTTCCSCHHHHSTTSHHHHHHHHTC---CCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTCCHHHHHHHHHHHHHH
T ss_pred HHHhCCcHHHHhchHHHHHHHHcCC---CcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccCCHHHHHHHHHHHHHh
Confidence 36789998887 67777777554 468999999999999999999998765554331 11111111 1
Q ss_pred HhCCCeeEEEEecCCCH--HhHHHHHhhccCCCCCcEEEE-EeCChh--HH-HhcCCCceEEcCCCCHHHHHHHHhhhc
Q 040354 93 RLTRKKLLIVFDDVHHP--RQIDCLIECLDWFASASRIII-ISRDKQ--AL-ISCGVNKIYQMQELVHADALKLFSECA 165 (172)
Q Consensus 93 ~l~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~s~iii-Ttr~~~--~~-~~~~~~~~~~l~~l~~~~~~~lf~~~a 165 (172)
....++.+|++|+++.. .+.+.|+..+.. ....+|. ||.+.. +. .......++.+.+++.++...++.+..
T Consensus 102 ~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l 178 (447)
T 3pvs_A 102 RNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAM 178 (447)
T ss_dssp HHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHH
T ss_pred hhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHH
Confidence 12356789999999754 345555555543 2233443 444432 11 112344588999999999998887653
No 24
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.11 E-value=3.8e-10 Score=86.78 Aligned_cols=128 Identities=15% Similarity=0.144 Sum_probs=85.8
Q ss_pred CCccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc--Ccc----cHHHHHHHhC----
Q 040354 26 NNHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITRRFEEF--PNI----GLNFQSKRLT---- 95 (172)
Q Consensus 26 ~~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~--~~~----~~~~~~~~l~---- 95 (172)
-+.++|++..++.+.+++..... ...+.++|++|+|||++|+.+++.+...|-.. .+. ....+.....
T Consensus 25 ~~~ivg~~~~~~~l~~~l~~~~~--~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~ 102 (324)
T 3u61_B 25 IDECILPAFDKETFKSITSKGKI--PHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCKIDFVRGPLTNFASAASF 102 (324)
T ss_dssp TTTSCCCHHHHHHHHHHHHTTCC--CSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCCHHHHHTHHHHHHHBCCC
T ss_pred HHHHhCcHHHHHHHHHHHHcCCC--CeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccCHHHHHHHHHHHHhhccc
Confidence 36799999999999999985543 36788889999999999999998864433222 111 2222222222
Q ss_pred -CCeeEEEEecCCCHH---hHHHHHhhccCCCCCcEEEEEeCChh-----HHHhcCCCceEEcCCCCHHHHH
Q 040354 96 -RKKLLIVFDDVHHPR---QIDCLIECLDWFASASRIIIISRDKQ-----ALISCGVNKIYQMQELVHADAL 158 (172)
Q Consensus 96 -~~~~LlvlDdv~~~~---~~~~l~~~~~~~~~~s~iiiTtr~~~-----~~~~~~~~~~~~l~~l~~~~~~ 158 (172)
+++.++++||++... ..+.+...+.......++|+||.... +... ...+++++++.++..
T Consensus 103 ~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR---~~~i~~~~~~~~e~~ 171 (324)
T 3u61_B 103 DGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSR---CRVITFGQPTDEDKI 171 (324)
T ss_dssp SSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHH---SEEEECCCCCHHHHH
T ss_pred CCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhh---CcEEEeCCCCHHHHH
Confidence 267899999998653 45566655544345667888876543 2222 247899999988743
No 25
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.11 E-value=5e-10 Score=85.91 Aligned_cols=139 Identities=14% Similarity=0.157 Sum_probs=89.3
Q ss_pred CCccccccchHHHHHHHhcCC---CCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc--Ccc-cHHHHHHHhCC---
Q 040354 26 NNHLVGIESRTEEIESVLGVG---STMNICKLGISGSGDIGKITIAGAIFNKITRRFEEF--PNI-GLNFQSKRLTR--- 96 (172)
Q Consensus 26 ~~~~~Gr~~~~~~l~~~l~~~---~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~--~~~-~~~~~~~~l~~--- 96 (172)
-+.++|++..++.+..++... ... ...+.|+|++|+|||++|+.+++.....|... ... ....+...+..
T Consensus 11 ~~~~ig~~~~~~~l~~~l~~~~~~~~~-~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 89 (324)
T 1hqc_A 11 LDEYIGQERLKQKLRVYLEAAKARKEP-LEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANSLE 89 (324)
T ss_dssp TTTCCSCHHHHHHHHHHHHHHHHHCSC-CCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSHHHHHHHHTTTCC
T ss_pred HHHhhCHHHHHHHHHHHHHHHHccCCC-CCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCChHHHHHHHHHhcc
Confidence 367999999999888877521 111 46789999999999999999999875554332 222 33444445443
Q ss_pred CeeEEEEecCCCH--HhHHHHHhhccCCC------------------CCcEEEEEeCChh-HHHhc-C-CCceEEcCCCC
Q 040354 97 KKLLIVFDDVHHP--RQIDCLIECLDWFA------------------SASRIIIISRDKQ-ALISC-G-VNKIYQMQELV 153 (172)
Q Consensus 97 ~~~LlvlDdv~~~--~~~~~l~~~~~~~~------------------~~s~iiiTtr~~~-~~~~~-~-~~~~~~l~~l~ 153 (172)
++.+|++|+++.. .....+...+.... +..++|.+|.... +...+ . ....+.+.+++
T Consensus 90 ~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~ 169 (324)
T 1hqc_A 90 EGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYT 169 (324)
T ss_dssp TTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCC
T ss_pred CCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCC
Confidence 5679999999754 34444444333211 2345666665432 11111 1 23578999999
Q ss_pred HHHHHHHHhhhc
Q 040354 154 HADALKLFSECA 165 (172)
Q Consensus 154 ~~~~~~lf~~~a 165 (172)
.++..+++.+.+
T Consensus 170 ~~e~~~~l~~~~ 181 (324)
T 1hqc_A 170 PEELAQGVMRDA 181 (324)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998887654
No 26
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.07 E-value=2e-09 Score=82.95 Aligned_cols=138 Identities=12% Similarity=0.072 Sum_probs=86.9
Q ss_pred CCccccccchHHHHHHHhc---------CCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc------Cc-c----
Q 040354 26 NNHLVGIESRTEEIESVLG---------VGSTMNICKLGISGSGDIGKITIAGAIFNKITRRFEEF------PN-I---- 85 (172)
Q Consensus 26 ~~~~~Gr~~~~~~l~~~l~---------~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~------~~-~---- 85 (172)
-+.++|.+..++.|...+. .......+.+.|+|++|+|||+||+.+++.....|-.. .. .
T Consensus 17 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~ 96 (322)
T 3eie_A 17 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESE 96 (322)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTTGGGHH
T ss_pred HHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhcccchHH
Confidence 3678999999999988772 11111146799999999999999999999866555433 11 1
Q ss_pred --cHHHHHHHhCCCeeEEEEecCCCHH-------------hHHHHHhhccC---CCCCcEEEEEeCChh-----HHHhcC
Q 040354 86 --GLNFQSKRLTRKKLLIVFDDVHHPR-------------QIDCLIECLDW---FASASRIIIISRDKQ-----ALISCG 142 (172)
Q Consensus 86 --~~~~~~~~l~~~~~LlvlDdv~~~~-------------~~~~l~~~~~~---~~~~s~iiiTtr~~~-----~~~~~~ 142 (172)
....+...-...+.+|+||+++... ....++..+.. ...+..||.||.... +...
T Consensus 97 ~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~R-- 174 (322)
T 3eie_A 97 KLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRR-- 174 (322)
T ss_dssp HHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHH--
T ss_pred HHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHcc--
Confidence 1122222223466899999997431 13344433332 234555666665432 2222
Q ss_pred CCceEEcCCCCHHHHHHHHhhhc
Q 040354 143 VNKIYQMQELVHADALKLFSECA 165 (172)
Q Consensus 143 ~~~~~~l~~l~~~~~~~lf~~~a 165 (172)
....+.+...+.++..++|...+
T Consensus 175 f~~~i~~~~p~~~~r~~il~~~~ 197 (322)
T 3eie_A 175 FERRIYIPLPDLAARTTMFEINV 197 (322)
T ss_dssp CCEEEECCCCCHHHHHHHHHHHH
T ss_pred cCeEEEeCCCCHHHHHHHHHHHh
Confidence 34567889999999998887764
No 27
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.05 E-value=1.8e-09 Score=83.45 Aligned_cols=139 Identities=13% Similarity=0.177 Sum_probs=89.9
Q ss_pred CCccccccchHHHHHHHhcCC---CCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCcC--cc-cHHHHHHHhC--CC
Q 040354 26 NNHLVGIESRTEEIESVLGVG---STMNICKLGISGSGDIGKITIAGAIFNKITRRFEEFP--NI-GLNFQSKRLT--RK 97 (172)
Q Consensus 26 ~~~~~Gr~~~~~~l~~~l~~~---~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~--~~-~~~~~~~~l~--~~ 97 (172)
-..++|++..++.+..++... ... ...+.|+|++|+|||+||+.+++.....|.... .. ....+...+. .+
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~~~~~-~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKKRNEC-LDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEKSGDLAAILTNLSE 106 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHTTSC-CCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCSHHHHHHHHHTCCT
T ss_pred HHHhCChHHHHHHHHHHHHHHHhcCCC-CCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccchhHHHHHHHhccC
Confidence 367999999999998888732 222 467899999999999999999988665554331 11 3344444443 35
Q ss_pred eeEEEEecCCCH--HhHHHHHhhccCCC------------------CCcEEEEEeCChhH-HHh-c-CCCceEEcCCCCH
Q 040354 98 KLLIVFDDVHHP--RQIDCLIECLDWFA------------------SASRIIIISRDKQA-LIS-C-GVNKIYQMQELVH 154 (172)
Q Consensus 98 ~~LlvlDdv~~~--~~~~~l~~~~~~~~------------------~~s~iiiTtr~~~~-~~~-~-~~~~~~~l~~l~~ 154 (172)
..+|+||+++.. .....+...+.... +...+|.+|..... ... . .....+.+.+++.
T Consensus 107 ~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~ 186 (338)
T 3pfi_A 107 GDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKD 186 (338)
T ss_dssp TCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCH
T ss_pred CCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCH
Confidence 689999999743 44445554443221 12456666554321 111 1 1236799999999
Q ss_pred HHHHHHHhhhc
Q 040354 155 ADALKLFSECA 165 (172)
Q Consensus 155 ~~~~~lf~~~a 165 (172)
++...++.+.+
T Consensus 187 ~e~~~il~~~~ 197 (338)
T 3pfi_A 187 SELALILQKAA 197 (338)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988877553
No 28
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.04 E-value=1.8e-09 Score=81.06 Aligned_cols=138 Identities=12% Similarity=0.125 Sum_probs=81.7
Q ss_pred CCccccccchHHHHHH-------HhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc---Ccc----------
Q 040354 26 NNHLVGIESRTEEIES-------VLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITRRFEEF---PNI---------- 85 (172)
Q Consensus 26 ~~~~~Gr~~~~~~l~~-------~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~---~~~---------- 85 (172)
.+.++|....++.+.. .+..........+.|+|++|+|||+||+.+++.....|-.. +.+
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~~ 111 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQ 111 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHH
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHHH
Confidence 3567888877666655 23211122268899999999999999999999855443322 111
Q ss_pred -cHHHHHHHhCCCeeEEEEecCCCH------------HhHHHHHhhccCC---CCCcEEEEEeCChhHHHhc---C-CCc
Q 040354 86 -GLNFQSKRLTRKKLLIVFDDVHHP------------RQIDCLIECLDWF---ASASRIIIISRDKQALISC---G-VNK 145 (172)
Q Consensus 86 -~~~~~~~~l~~~~~LlvlDdv~~~------------~~~~~l~~~~~~~---~~~s~iiiTtr~~~~~~~~---~-~~~ 145 (172)
....+.........+|+||+++.. ..++.+...+... .....||.||........+ . ...
T Consensus 112 ~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~ 191 (272)
T 1d2n_A 112 AMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFST 191 (272)
T ss_dssp HHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSE
T ss_pred HHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccce
Confidence 112222333456789999998643 1233444333322 1233466677766544431 2 245
Q ss_pred eEEcCCCCH-HHHHHHHhh
Q 040354 146 IYQMQELVH-ADALKLFSE 163 (172)
Q Consensus 146 ~~~l~~l~~-~~~~~lf~~ 163 (172)
.+.+++++. ++...++.+
T Consensus 192 ~i~~p~l~~r~~i~~i~~~ 210 (272)
T 1d2n_A 192 TIHVPNIATGEQLLEALEL 210 (272)
T ss_dssp EEECCCEEEHHHHHHHHHH
T ss_pred EEcCCCccHHHHHHHHHHh
Confidence 688999988 666665544
No 29
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.04 E-value=2.5e-10 Score=83.60 Aligned_cols=135 Identities=13% Similarity=0.144 Sum_probs=77.1
Q ss_pred Ccccccc---chHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhcc-ccCc----CcccHHHHHHHhC--C
Q 040354 27 NHLVGIE---SRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITRR-FEEF----PNIGLNFQSKRLT--R 96 (172)
Q Consensus 27 ~~~~Gr~---~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~-f~~~----~~~~~~~~~~~l~--~ 96 (172)
+.++|.+ ..++.+..++.... .+.+.|+|++|+||||||+.+++..... +... .++ ...+...+. .
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~~---~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 103 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGDG---VQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH-ASISTALLEGLE 103 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTCS---CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG-GGSCGGGGTTGG
T ss_pred hhccCCCCCHHHHHHHHHHHhCCC---CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH-HHHHHHHHHhcc
Confidence 4567633 45566666665432 4789999999999999999999985432 1111 111 011111111 3
Q ss_pred CeeEEEEecCCCHH--h--HHHHHhhccCCC-CCc-EEEEEeCChh---------HHHhcCCCceEEcCCCCHHHHHHHH
Q 040354 97 KKLLIVFDDVHHPR--Q--IDCLIECLDWFA-SAS-RIIIISRDKQ---------ALISCGVNKIYQMQELVHADALKLF 161 (172)
Q Consensus 97 ~~~LlvlDdv~~~~--~--~~~l~~~~~~~~-~~s-~iiiTtr~~~---------~~~~~~~~~~~~l~~l~~~~~~~lf 161 (172)
++.+|++||++... . .+.+...+.... .+. ++|+|++... +...+.....+++.+++.++..+++
T Consensus 104 ~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l 183 (242)
T 3bos_A 104 QFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAAL 183 (242)
T ss_dssp GSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHH
T ss_pred CCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHH
Confidence 45799999996431 1 333333322111 222 4777776321 2222212267999999999999988
Q ss_pred hhhc
Q 040354 162 SECA 165 (172)
Q Consensus 162 ~~~a 165 (172)
.+.+
T Consensus 184 ~~~~ 187 (242)
T 3bos_A 184 QRRA 187 (242)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
No 30
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.03 E-value=3.3e-09 Score=86.76 Aligned_cols=138 Identities=14% Similarity=0.118 Sum_probs=84.8
Q ss_pred CCccccccchHHHHHHHhcCCC--------------CCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc--Ccc-cHH
Q 040354 26 NNHLVGIESRTEEIESVLGVGS--------------TMNICKLGISGSGDIGKITIAGAIFNKITRRFEEF--PNI-GLN 88 (172)
Q Consensus 26 ~~~~~Gr~~~~~~l~~~l~~~~--------------~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~--~~~-~~~ 88 (172)
-..++|++..++.+.+|+..-. ....+.+.|+|++|+||||+|+.+++.....|-.. .+. ...
T Consensus 38 ~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~~~ 117 (516)
T 1sxj_A 38 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKT 117 (516)
T ss_dssp GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCCHH
T ss_pred HHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcchHH
Confidence 3679999999999999987410 01147899999999999999999999863322111 111 111
Q ss_pred HHHHHh----------------------CCCeeEEEEecCCCH-----HhHHHHHhhccCCCCCcEEEEEeCChh---HH
Q 040354 89 FQSKRL----------------------TRKKLLIVFDDVHHP-----RQIDCLIECLDWFASASRIIIISRDKQ---AL 138 (172)
Q Consensus 89 ~~~~~l----------------------~~~~~LlvlDdv~~~-----~~~~~l~~~~~~~~~~s~iiiTtr~~~---~~ 138 (172)
.+...+ ..++.+|+||+++.. ..+..+...+.. .+..||+++.+.. +.
T Consensus 118 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~~~~~l~ 195 (516)
T 1sxj_A 118 LLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNERNLPKMR 195 (516)
T ss_dssp HHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCTTSSTTG
T ss_pred HHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCCCCccch
Confidence 111111 145689999999643 123444433332 2334666554422 22
Q ss_pred HhcCCCceEEcCCCCHHHHHHHHhhhc
Q 040354 139 ISCGVNKIYQMQELVHADALKLFSECA 165 (172)
Q Consensus 139 ~~~~~~~~~~l~~l~~~~~~~lf~~~a 165 (172)
........+++.+++.++..+++...+
T Consensus 196 ~l~~r~~~i~f~~~~~~~~~~~L~~i~ 222 (516)
T 1sxj_A 196 PFDRVCLDIQFRRPDANSIKSRLMTIA 222 (516)
T ss_dssp GGTTTSEEEECCCCCHHHHHHHHHHHH
T ss_pred hhHhceEEEEeCCCCHHHHHHHHHHHH
Confidence 222344578999999999888776543
No 31
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.03 E-value=2.5e-09 Score=81.18 Aligned_cols=153 Identities=13% Similarity=0.093 Sum_probs=89.1
Q ss_pred HHHHHHHhccccCCCCCCCccccccchHHHHHHHhcCC----------CCCCeeEEEEEcCCCchHHHHHHHHHHHHhcc
Q 040354 9 IFKEVLDWLDDTFQTENNNHLVGIESRTEEIESVLGVG----------STMNICKLGISGSGDIGKITIAGAIFNKITRR 78 (172)
Q Consensus 9 i~~~v~~~~~~~~~~~~~~~~~Gr~~~~~~l~~~l~~~----------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 78 (172)
+++.+...+....+...-+.++|.+..++.+.+++... ... ...+.|+|++|+|||++|+.+++.....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~-~~~vll~Gp~GtGKT~la~~la~~~~~~ 81 (297)
T 3b9p_A 3 LVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAP-AKGLLLFGPPGNGKTLLARAVATECSAT 81 (297)
T ss_dssp HHHHHHTTTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCC-CSEEEEESSSSSCHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCC-CCeEEEECcCCCCHHHHHHHHHHHhCCC
Confidence 44555544443333134467999999999988876320 111 4689999999999999999999986544
Q ss_pred ccCc--Cc----c-------cHHHHHHHhCCCeeEEEEecCCCH-------------HhHHHHHhhccCCC-----CCcE
Q 040354 79 FEEF--PN----I-------GLNFQSKRLTRKKLLIVFDDVHHP-------------RQIDCLIECLDWFA-----SASR 127 (172)
Q Consensus 79 f~~~--~~----~-------~~~~~~~~l~~~~~LlvlDdv~~~-------------~~~~~l~~~~~~~~-----~~s~ 127 (172)
|... .+ . ....+.......+.+|+||+++.. .....++..+.... .+..
T Consensus 82 ~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~ 161 (297)
T 3b9p_A 82 FLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIV 161 (297)
T ss_dssp EEEEESTTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEE
T ss_pred eEEeeHHHHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEE
Confidence 4322 11 1 112222223346789999999633 11222332222111 2345
Q ss_pred EEEEeCChh-----HHHhcCCCceEEcCCCCHHHHHHHHhhh
Q 040354 128 IIIISRDKQ-----ALISCGVNKIYQMQELVHADALKLFSEC 164 (172)
Q Consensus 128 iiiTtr~~~-----~~~~~~~~~~~~l~~l~~~~~~~lf~~~ 164 (172)
||.||.... +... ....+.+...+.++...++...
T Consensus 162 vi~~tn~~~~l~~~l~~R--~~~~i~~~~p~~~~r~~il~~~ 201 (297)
T 3b9p_A 162 VLAATNRPQELDEAALRR--FTKRVYVSLPDEQTRELLLNRL 201 (297)
T ss_dssp EEEEESCGGGBCHHHHHH--CCEEEECCCCCHHHHHHHHHHH
T ss_pred EEeecCChhhCCHHHHhh--CCeEEEeCCcCHHHHHHHHHHH
Confidence 666666532 2222 3356778888888877776554
No 32
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.02 E-value=6.9e-09 Score=81.09 Aligned_cols=138 Identities=12% Similarity=0.094 Sum_probs=85.4
Q ss_pred CCccccccchHHHHHHHhcC---------CCCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc------Ccc---cH
Q 040354 26 NNHLVGIESRTEEIESVLGV---------GSTMNICKLGISGSGDIGKITIAGAIFNKITRRFEEF------PNI---GL 87 (172)
Q Consensus 26 ~~~~~Gr~~~~~~l~~~l~~---------~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~------~~~---~~ 87 (172)
-++++|.+..++.|.+.+.. ......+.+.|+|++|+|||+||+.+++.....|-.. ... ..
T Consensus 50 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~~g~~~ 129 (355)
T 2qp9_X 50 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESE 129 (355)
T ss_dssp GGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC---CH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhhcchHH
Confidence 36789999999998876631 1111145689999999999999999999876554333 111 12
Q ss_pred HHHHH----HhCCCeeEEEEecCCCHH-------------hHHHHHhhccCC---CCCcEEEEEeCChh-----HHHhcC
Q 040354 88 NFQSK----RLTRKKLLIVFDDVHHPR-------------QIDCLIECLDWF---ASASRIIIISRDKQ-----ALISCG 142 (172)
Q Consensus 88 ~~~~~----~l~~~~~LlvlDdv~~~~-------------~~~~l~~~~~~~---~~~s~iiiTtr~~~-----~~~~~~ 142 (172)
..++. .....+.+|+||+++... ....++..+... ..+..||.||.... +.. .
T Consensus 130 ~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~r--R 207 (355)
T 2qp9_X 130 KLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--R 207 (355)
T ss_dssp HHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHH--T
T ss_pred HHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHc--c
Confidence 22222 223467899999997432 133343333322 23455665665432 222 2
Q ss_pred CCceEEcCCCCHHHHHHHHhhhc
Q 040354 143 VNKIYQMQELVHADALKLFSECA 165 (172)
Q Consensus 143 ~~~~~~l~~l~~~~~~~lf~~~a 165 (172)
....+.+...+.++..+++....
T Consensus 208 f~~~i~i~~P~~~~r~~il~~~l 230 (355)
T 2qp9_X 208 FERRIYIPLPDLAARTTMFEINV 230 (355)
T ss_dssp CCEEEECCCCCHHHHHHHHHHHH
T ss_pred cCEEEEeCCcCHHHHHHHHHHHH
Confidence 34578899999998888887654
No 33
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.02 E-value=1.4e-09 Score=87.30 Aligned_cols=115 Identities=16% Similarity=0.166 Sum_probs=73.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhccccCc-------Ccc-----------cHHHHHHHhCCCeeEEEEecCCCH---
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKITRRFEEF-------PNI-----------GLNFQSKRLTRKKLLIVFDDVHHP--- 109 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~-------~~~-----------~~~~~~~~l~~~~~LlvlDdv~~~--- 109 (172)
...+.|+|++|+||||||+.+++.+...+... .++ ....+...+..+..+|++||++..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~ 209 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK 209 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC
Confidence 46899999999999999999999864433211 111 112223333335679999999632
Q ss_pred -HhHHHHHhhccC-CCCCcEEEEEeCCh---------hHHHhcCCCceEEcCCCCHHHHHHHHhhhc
Q 040354 110 -RQIDCLIECLDW-FASASRIIIISRDK---------QALISCGVNKIYQMQELVHADALKLFSECA 165 (172)
Q Consensus 110 -~~~~~l~~~~~~-~~~~s~iiiTtr~~---------~~~~~~~~~~~~~l~~l~~~~~~~lf~~~a 165 (172)
...+.+...+.. ...|..||+||.+. .+...+.....+.+.+++.++..+++.+.+
T Consensus 210 ~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~ 276 (440)
T 2z4s_A 210 TGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKML 276 (440)
T ss_dssp HHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHH
Confidence 233444444322 23567788888752 233333344678999999999998887654
No 34
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.01 E-value=4e-09 Score=81.64 Aligned_cols=138 Identities=10% Similarity=0.118 Sum_probs=88.3
Q ss_pred CCCccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhcc------ccCc--Cc-c----cHHHHH
Q 040354 25 NNNHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITRR------FEEF--PN-I----GLNFQS 91 (172)
Q Consensus 25 ~~~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~------f~~~--~~-~----~~~~~~ 91 (172)
.-..++|++..++.+..++..... +.+.|+|++|+||||+|+.+++.+... +... .+ . ....+.
T Consensus 35 ~~~~i~g~~~~~~~l~~~l~~~~~---~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (353)
T 1sxj_D 35 NLDEVTAQDHAVTVLKKTLKSANL---PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVK 111 (353)
T ss_dssp STTTCCSCCTTHHHHHHHTTCTTC---CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHHH
T ss_pred CHHHhhCCHHHHHHHHHHHhcCCC---CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHHHHHH
Confidence 346799999999999999876542 338999999999999999999884321 1111 11 1 111111
Q ss_pred HHh----------------CCCeeEEEEecCCC--HHhHHHHHhhccCCCCCcEEEEEeCChh-HHHhc-CCCceEEcCC
Q 040354 92 KRL----------------TRKKLLIVFDDVHH--PRQIDCLIECLDWFASASRIIIISRDKQ-ALISC-GVNKIYQMQE 151 (172)
Q Consensus 92 ~~l----------------~~~~~LlvlDdv~~--~~~~~~l~~~~~~~~~~s~iiiTtr~~~-~~~~~-~~~~~~~l~~ 151 (172)
... ..+.-+|++|+++. ....+.+...+.......++|+++.... +...+ .....+++.+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~~ 191 (353)
T 1sxj_D 112 NFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKA 191 (353)
T ss_dssp HHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCC
T ss_pred HHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEEeCC
Confidence 111 12446999999964 3445666666655555677777775432 11111 1224789999
Q ss_pred CCHHHHHHHHhhhc
Q 040354 152 LVHADALKLFSECA 165 (172)
Q Consensus 152 l~~~~~~~lf~~~a 165 (172)
++.++....+.+.+
T Consensus 192 ~~~~~~~~~l~~~~ 205 (353)
T 1sxj_D 192 LDASNAIDRLRFIS 205 (353)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999888877643
No 35
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.01 E-value=1.1e-09 Score=84.39 Aligned_cols=137 Identities=12% Similarity=0.148 Sum_probs=83.3
Q ss_pred CccccccchHHHHHHHhcCC--CCCCeeEEEEEcCCCchHHHHHHHHHHHHhc--------cccCc--------------
Q 040354 27 NHLVGIESRTEEIESVLGVG--STMNICKLGISGSGDIGKITIAGAIFNKITR--------RFEEF-------------- 82 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~--~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~--------~f~~~-------------- 82 (172)
..+.||+++++.|...|... ... .+.+.|+|++|+|||++++.+++++.. .|...
T Consensus 20 ~~L~~Re~E~~~i~~~L~~~i~~~~-~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~ 98 (318)
T 3te6_A 20 ELLKSQVEDFTRIFLPIYDSLMSSQ-NKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALY 98 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC-CCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHH
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCC-CCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHH
Confidence 34789999999998877621 122 578999999999999999999998643 22221
Q ss_pred ---------Ccc----cHHHHHHHh------CCCeeEEEEecCCCHHhHHHHHhhccCC-CCCc--EEEEEeCChh----
Q 040354 83 ---------PNI----GLNFQSKRL------TRKKLLIVFDDVHHPRQIDCLIECLDWF-ASAS--RIIIISRDKQ---- 136 (172)
Q Consensus 83 ---------~~~----~~~~~~~~l------~~~~~LlvlDdv~~~~~~~~l~~~~~~~-~~~s--~iiiTtr~~~---- 136 (172)
... ....+..++ .+++++++||+++...+-+.+...+.|. ...+ .||.++...+
T Consensus 99 ~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~ 178 (318)
T 3te6_A 99 EKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIRE 178 (318)
T ss_dssp HHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHH
T ss_pred HHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchh
Confidence 000 122333332 2457899999998643323333333221 1222 2333343321
Q ss_pred HH-----HhcCCCceEEcCCCCHHHHHHHHhhhc
Q 040354 137 AL-----ISCGVNKIYQMQELVHADALKLFSECA 165 (172)
Q Consensus 137 ~~-----~~~~~~~~~~l~~l~~~~~~~lf~~~a 165 (172)
.. ..+. ...+.+.+.+.++..+++.+++
T Consensus 179 ~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 179 QINIMPSLKAH-FTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp HHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHH
T ss_pred hcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHH
Confidence 11 1221 2468999999999999887653
No 36
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.99 E-value=6.6e-09 Score=79.36 Aligned_cols=138 Identities=14% Similarity=0.168 Sum_probs=86.4
Q ss_pred CccccccchHHHHHHHhcC-----------CCCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCcC--c--------c
Q 040354 27 NHLVGIESRTEEIESVLGV-----------GSTMNICKLGISGSGDIGKITIAGAIFNKITRRFEEFP--N--------I 85 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~-----------~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~--~--------~ 85 (172)
++++|.+..++.|.+++.. .-.. ...+.|+|++|+|||+||+.+++.....|-... + .
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~-~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~g~~ 93 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTP-SKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGES 93 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCC-CSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCC-CceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhcCch
Confidence 5688999888888776642 1122 468999999999999999999998655443220 0 0
Q ss_pred ---cHHHHHHHhCCCeeEEEEecCCCHH----------------hHHHHHhhccCCC--CCcEEEEEeCChhHH-Hh-c-
Q 040354 86 ---GLNFQSKRLTRKKLLIVFDDVHHPR----------------QIDCLIECLDWFA--SASRIIIISRDKQAL-IS-C- 141 (172)
Q Consensus 86 ---~~~~~~~~l~~~~~LlvlDdv~~~~----------------~~~~l~~~~~~~~--~~s~iiiTtr~~~~~-~~-~- 141 (172)
....+.......+.+|+||+++... ....++..+.... .+..||.||...... .. +
T Consensus 94 ~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r 173 (301)
T 3cf0_A 94 EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILR 173 (301)
T ss_dssp TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGS
T ss_pred HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhc
Confidence 2222333333457899999997432 1344444443222 345677777654322 11 1
Q ss_pred --CCCceEEcCCCCHHHHHHHHhhhc
Q 040354 142 --GVNKIYQMQELVHADALKLFSECA 165 (172)
Q Consensus 142 --~~~~~~~l~~l~~~~~~~lf~~~a 165 (172)
.....+.+...+.++-.+++....
T Consensus 174 ~gRf~~~i~i~~p~~~~r~~il~~~l 199 (301)
T 3cf0_A 174 PGRLDQLIYIPLPDEKSRVAILKANL 199 (301)
T ss_dssp TTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred CCccceEEecCCcCHHHHHHHHHHHH
Confidence 133578899999998888876553
No 37
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.98 E-value=7.4e-09 Score=80.32 Aligned_cols=136 Identities=13% Similarity=0.138 Sum_probs=87.7
Q ss_pred CccccccchHHHHHHHh-cCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhc-c----------cc--------------
Q 040354 27 NHLVGIESRTEEIESVL-GVGSTMNICKLGISGSGDIGKITIAGAIFNKITR-R----------FE-------------- 80 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l-~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~-~----------f~-------------- 80 (172)
..++|++...+.+.+++ ...... . +.|+|++|+||||+|+.+++.+.. . +.
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~~~--~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~ 90 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRDLP--H-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSS 90 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTCCC--C-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEEC
T ss_pred HHhcCCHHHHHHHHHHHhhCCCCC--e-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecc
Confidence 66899999999999988 544322 4 999999999999999999986311 1 00
Q ss_pred -----Cc-Ccc-------cHHHHHHHhC--------------CCeeEEEEecCCC--HHhHHHHHhhccCCCCCcEEEEE
Q 040354 81 -----EF-PNI-------GLNFQSKRLT--------------RKKLLIVFDDVHH--PRQIDCLIECLDWFASASRIIII 131 (172)
Q Consensus 81 -----~~-~~~-------~~~~~~~~l~--------------~~~~LlvlDdv~~--~~~~~~l~~~~~~~~~~s~iiiT 131 (172)
.. .+. ....+..... .++-++++|+++. ....+.+...+.....++.+|++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~ 170 (354)
T 1sxj_E 91 PYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMV 170 (354)
T ss_dssp SSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEE
T ss_pred cceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEE
Confidence 00 000 1112222211 2455999999975 34456666666554567788888
Q ss_pred eCChh-HHHh-cCCCceEEcCCCCHHHHHHHHhhhc
Q 040354 132 SRDKQ-ALIS-CGVNKIYQMQELVHADALKLFSECA 165 (172)
Q Consensus 132 tr~~~-~~~~-~~~~~~~~l~~l~~~~~~~lf~~~a 165 (172)
|.+.. +... ......+++.+++.++..+++.+.+
T Consensus 171 t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~ 206 (354)
T 1sxj_E 171 CDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVV 206 (354)
T ss_dssp ESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHH
T ss_pred eCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHH
Confidence 87642 2222 2334679999999999988887543
No 38
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.96 E-value=4.2e-09 Score=81.04 Aligned_cols=136 Identities=16% Similarity=0.158 Sum_probs=77.5
Q ss_pred Cccc-cccch--HHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhc---cccCc--Ccc-----------cH
Q 040354 27 NHLV-GIESR--TEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITR---RFEEF--PNI-----------GL 87 (172)
Q Consensus 27 ~~~~-Gr~~~--~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~---~f~~~--~~~-----------~~ 87 (172)
+.|+ |.... ...+..++...... ...+.|+|++|+||||||+.+++.... .|-.. .++ ..
T Consensus 11 ~~fv~g~~~~~a~~~~~~~~~~~~~~-~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 89 (324)
T 1l8q_A 11 ENFIVGEGNRLAYEVVKEALENLGSL-YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTI 89 (324)
T ss_dssp SSCCCCTTTHHHHHHHHHHHHTTTTS-CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCH
T ss_pred ccCCCCCcHHHHHHHHHHHHhCcCCC-CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcH
Confidence 3444 64332 33444555443222 468999999999999999999998532 22111 111 11
Q ss_pred HHHHHHhCCCeeEEEEecCCCHH----hHHHHHhhccC-CCCCcEEEEEeCCh---------hHHHhcCCCceEEcCCCC
Q 040354 88 NFQSKRLTRKKLLIVFDDVHHPR----QIDCLIECLDW-FASASRIIIISRDK---------QALISCGVNKIYQMQELV 153 (172)
Q Consensus 88 ~~~~~~l~~~~~LlvlDdv~~~~----~~~~l~~~~~~-~~~~s~iiiTtr~~---------~~~~~~~~~~~~~l~~l~ 153 (172)
..+...+. +..+|++||++... ..+.+...+.. ...+..+|+|+... .+...+.....+++++ +
T Consensus 90 ~~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~ 167 (324)
T 1l8q_A 90 NEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-D 167 (324)
T ss_dssp HHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-C
T ss_pred HHHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-C
Confidence 11122221 35799999996432 22333333321 12456788887532 2333333446789999 9
Q ss_pred HHHHHHHHhhhc
Q 040354 154 HADALKLFSECA 165 (172)
Q Consensus 154 ~~~~~~lf~~~a 165 (172)
.++..+++.+.+
T Consensus 168 ~~e~~~il~~~~ 179 (324)
T 1l8q_A 168 NKTRFKIIKEKL 179 (324)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998887654
No 39
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.94 E-value=1.4e-08 Score=81.58 Aligned_cols=140 Identities=13% Similarity=0.102 Sum_probs=85.1
Q ss_pred CCccccccchHHHHHHHhcC---------CCCCCeeEEEEEcCCCchHHHHHHHHHHHH-hccccCc--Ccc--------
Q 040354 26 NNHLVGIESRTEEIESVLGV---------GSTMNICKLGISGSGDIGKITIAGAIFNKI-TRRFEEF--PNI-------- 85 (172)
Q Consensus 26 ~~~~~Gr~~~~~~l~~~l~~---------~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~-~~~f~~~--~~~-------- 85 (172)
-++++|.+...+.|.+.+.. ......+.+.|+|++|+|||+||+.+++.. ...|-.. .++
T Consensus 133 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~~g~~ 212 (444)
T 2zan_A 133 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGES 212 (444)
T ss_dssp GGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---------C
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhhcchH
Confidence 36789999988888876631 101114789999999999999999999986 4343222 111
Q ss_pred ---cHHHHHHHhCCCeeEEEEecCCCH-------------HhHHHHHhhccCC---CCCcEEEEEeCChhHH-Hh-c-CC
Q 040354 86 ---GLNFQSKRLTRKKLLIVFDDVHHP-------------RQIDCLIECLDWF---ASASRIIIISRDKQAL-IS-C-GV 143 (172)
Q Consensus 86 ---~~~~~~~~l~~~~~LlvlDdv~~~-------------~~~~~l~~~~~~~---~~~s~iiiTtr~~~~~-~~-~-~~ 143 (172)
....+...-...+.+|+||+++.. .....++..+... ..+..||.||...... .. . ..
T Consensus 213 ~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf 292 (444)
T 2zan_A 213 EKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRF 292 (444)
T ss_dssp CCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhc
Confidence 122222222346789999999754 1233444444322 2345566666543221 11 1 23
Q ss_pred CceEEcCCCCHHHHHHHHhhhc
Q 040354 144 NKIYQMQELVHADALKLFSECA 165 (172)
Q Consensus 144 ~~~~~l~~l~~~~~~~lf~~~a 165 (172)
...+.+...+.++...+|....
T Consensus 293 ~~~i~i~~P~~~~r~~il~~~l 314 (444)
T 2zan_A 293 EKRIYIPLPEAHARAAMFRLHL 314 (444)
T ss_dssp CEEEECCCCCHHHHHHHHHHHH
T ss_pred ceEEEeCCcCHHHHHHHHHHHH
Confidence 3567888888888888887653
No 40
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.93 E-value=9.7e-09 Score=81.08 Aligned_cols=138 Identities=14% Similarity=0.107 Sum_probs=82.2
Q ss_pred CccccccchHHHHHHHhcC----------CCCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc--Ccc-------cH
Q 040354 27 NHLVGIESRTEEIESVLGV----------GSTMNICKLGISGSGDIGKITIAGAIFNKITRRFEEF--PNI-------GL 87 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~----------~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~--~~~-------~~ 87 (172)
+.++|.+..++.|..++.. .... .+.+.|+|++|+|||+||+.++......|-.. .++ ..
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~ 193 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAP-ARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGE 193 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCC-CSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-------CH
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCC-CceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhccccchHH
Confidence 5789999999999887731 0111 46899999999999999999998865544332 111 11
Q ss_pred HHHHH----HhCCCeeEEEEecCCCH-------------HhHHHHHhhccCC----CCCcEEEEEeCChhHH-Hh-c-CC
Q 040354 88 NFQSK----RLTRKKLLIVFDDVHHP-------------RQIDCLIECLDWF----ASASRIIIISRDKQAL-IS-C-GV 143 (172)
Q Consensus 88 ~~~~~----~l~~~~~LlvlDdv~~~-------------~~~~~l~~~~~~~----~~~s~iiiTtr~~~~~-~~-~-~~ 143 (172)
..+.. .....+.+|+||+++.. .....++..+... .....||.||...... .. . ..
T Consensus 194 ~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~ 273 (389)
T 3vfd_A 194 KLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRF 273 (389)
T ss_dssp HHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHTTC
T ss_pred HHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHcCc
Confidence 22222 22345689999999643 1122333222211 1234455566543211 11 1 23
Q ss_pred CceEEcCCCCHHHHHHHHhhhc
Q 040354 144 NKIYQMQELVHADALKLFSECA 165 (172)
Q Consensus 144 ~~~~~l~~l~~~~~~~lf~~~a 165 (172)
...+.+...+.++..+++...+
T Consensus 274 ~~~i~i~~p~~~~r~~il~~~~ 295 (389)
T 3vfd_A 274 IKRVYVSLPNEETRLLLLKNLL 295 (389)
T ss_dssp CEEEECCCCCHHHHHHHHHHHH
T ss_pred ceEEEcCCcCHHHHHHHHHHHH
Confidence 3468899999999888887654
No 41
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.92 E-value=2.5e-08 Score=76.89 Aligned_cols=137 Identities=12% Similarity=0.102 Sum_probs=83.4
Q ss_pred CccccccchHHHHHHHhc---------CCCCCCeeEEEEEcCCCchHHHHHHHHHHHH-hccccCc--Cc-----c--cH
Q 040354 27 NHLVGIESRTEEIESVLG---------VGSTMNICKLGISGSGDIGKITIAGAIFNKI-TRRFEEF--PN-----I--GL 87 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~---------~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~-~~~f~~~--~~-----~--~~ 87 (172)
+++.|.+..++.|.+.+. .......+.+.|+|++|+|||+||+.+++.. ...|-.. .+ . ..
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~~g~~~ 91 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESE 91 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSSCCSCH
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhhhhHHH
Confidence 578898888888877552 1111114789999999999999999999986 4443322 11 1 22
Q ss_pred HHHHH----HhCCCeeEEEEecCCCH-------------HhHHHHHhhccCC---CCCcEEEEEeCChh-----HHHhcC
Q 040354 88 NFQSK----RLTRKKLLIVFDDVHHP-------------RQIDCLIECLDWF---ASASRIIIISRDKQ-----ALISCG 142 (172)
Q Consensus 88 ~~~~~----~l~~~~~LlvlDdv~~~-------------~~~~~l~~~~~~~---~~~s~iiiTtr~~~-----~~~~~~ 142 (172)
..++. .-...+.+|+||+++.. .....++..+... ..+..||.||.... +.. .
T Consensus 92 ~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~r--R 169 (322)
T 1xwi_A 92 KLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--R 169 (322)
T ss_dssp HHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHH--T
T ss_pred HHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHh--h
Confidence 22222 22356789999999754 1123344333322 23445555664332 222 2
Q ss_pred CCceEEcCCCCHHHHHHHHhhhc
Q 040354 143 VNKIYQMQELVHADALKLFSECA 165 (172)
Q Consensus 143 ~~~~~~l~~l~~~~~~~lf~~~a 165 (172)
....+.+...+.++..+++....
T Consensus 170 f~~~i~i~~P~~~~r~~il~~~l 192 (322)
T 1xwi_A 170 FEKRIYIPLPEPHARAAMFKLHL 192 (322)
T ss_dssp CCEEEECCCCCHHHHHHHHHHHH
T ss_pred cCeEEEeCCcCHHHHHHHHHHHH
Confidence 34578899999998888887653
No 42
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.91 E-value=1.2e-08 Score=79.59 Aligned_cols=51 Identities=18% Similarity=0.179 Sum_probs=38.4
Q ss_pred CCccccccchHHHH---HHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhc
Q 040354 26 NNHLVGIESRTEEI---ESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITR 77 (172)
Q Consensus 26 ~~~~~Gr~~~~~~l---~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~ 77 (172)
-+.++|++...+.+ .+.+...... .+.+.|+|++|+|||++|+.+++....
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~-~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIA-GRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCT-TCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCC-CCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 35799999887764 4444443322 368999999999999999999998653
No 43
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.89 E-value=2.1e-09 Score=73.47 Aligned_cols=103 Identities=17% Similarity=0.056 Sum_probs=63.4
Q ss_pred ccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHH---hccccCc-Ccc-----cHHHHHHHhCCCe
Q 040354 28 HLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKI---TRRFEEF-PNI-----GLNFQSKRLTRKK 98 (172)
Q Consensus 28 ~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~---~~~f~~~-~~~-----~~~~~~~~l~~~~ 98 (172)
.++|+...+..+.+.+..-... ...+.|+|++|+|||++|+.+++.. ...|-.. ..+ ....+... +.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~-~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~a---~~ 77 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSET-DIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPDNAPQLNDFIALA---QG 77 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTC-CSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCEEEECCTTTSSCHHHHHHHH---TT
T ss_pred CceeCCHHHHHHHHHHHHHhCC-CCCEEEECCCCCCHHHHHHHHHHhCCccCCCEEEECCCCCcchhhhcHHHHc---CC
Confidence 5789999999988877532222 3568899999999999999999873 2233311 111 11112111 34
Q ss_pred eEEEEecCCC--HHhHHHHHhhccCCCCCcEEEEEeCC
Q 040354 99 LLIVFDDVHH--PRQIDCLIECLDWFASASRIIIISRD 134 (172)
Q Consensus 99 ~LlvlDdv~~--~~~~~~l~~~~~~~~~~s~iiiTtr~ 134 (172)
..|++|+++. ......+...+.......++|.||..
T Consensus 78 g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 78 GTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp SCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred cEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 5789999974 34455555555444445677777754
No 44
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.89 E-value=8.8e-09 Score=83.73 Aligned_cols=138 Identities=12% Similarity=0.113 Sum_probs=87.4
Q ss_pred CccccccchHHHHHHHhcCC-----------CCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc------Ccc----
Q 040354 27 NHLVGIESRTEEIESVLGVG-----------STMNICKLGISGSGDIGKITIAGAIFNKITRRFEEF------PNI---- 85 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~-----------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~------~~~---- 85 (172)
..++|.+..++.|.+++... ... ...+.|+|++|+|||++|+.+++.....|-.. ..+
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~-~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g~~ 282 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKP-PRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGES 282 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCC-CCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCC-CCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcchh
Confidence 45889999999988877531 122 46799999999999999999998865444333 111
Q ss_pred ---cHHHHHHHhCCCeeEEEEecCCCH-------------HhHHHHHhhccCCC--CCcEEEEEeCChhH-HHhc----C
Q 040354 86 ---GLNFQSKRLTRKKLLIVFDDVHHP-------------RQIDCLIECLDWFA--SASRIIIISRDKQA-LISC----G 142 (172)
Q Consensus 86 ---~~~~~~~~l~~~~~LlvlDdv~~~-------------~~~~~l~~~~~~~~--~~s~iiiTtr~~~~-~~~~----~ 142 (172)
....+.......+.+|+||+++.. .....|+..+.... ....||.||..... ...+ .
T Consensus 283 ~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gR 362 (489)
T 3hu3_A 283 ESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGR 362 (489)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTS
T ss_pred HHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCc
Confidence 223333334456789999999421 12344444443222 34456666654422 1111 2
Q ss_pred CCceEEcCCCCHHHHHHHHhhhc
Q 040354 143 VNKIYQMQELVHADALKLFSECA 165 (172)
Q Consensus 143 ~~~~~~l~~l~~~~~~~lf~~~a 165 (172)
....+.+...+.++..++|..++
T Consensus 363 f~~~i~i~~P~~~eR~~IL~~~~ 385 (489)
T 3hu3_A 363 FDREVDIGIPDATGRLEILQIHT 385 (489)
T ss_dssp SCEEEECCCCCHHHHHHHHHHHT
T ss_pred CceEEEeCCCCHHHHHHHHHHHH
Confidence 33468899999999999887664
No 45
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.87 E-value=3.2e-08 Score=76.62 Aligned_cols=135 Identities=12% Similarity=0.201 Sum_probs=86.2
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhc-cc-------cCcCcccHH----HHHHHh
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITR-RF-------EEFPNIGLN----FQSKRL 94 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~-~f-------~~~~~~~~~----~~~~~l 94 (172)
..++|.+..++.+..++..+. .+.+.++|++|+||||+|+.+++.+.. .+ ...+..... .+....
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~---~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~~i~~~~ 101 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGK---LPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFA 101 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC---CCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHhcCC---CceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHHHHHHHHH
Confidence 557898888899888887654 233899999999999999999998532 11 110111112 222222
Q ss_pred ------CCCeeEEEEecCCC--HHhHHHHHhhccCCCCCcEEEEEeCChh-HHHh-cCCCceEEcCCCCHHHHHHHHhhh
Q 040354 95 ------TRKKLLIVFDDVHH--PRQIDCLIECLDWFASASRIIIISRDKQ-ALIS-CGVNKIYQMQELVHADALKLFSEC 164 (172)
Q Consensus 95 ------~~~~~LlvlDdv~~--~~~~~~l~~~~~~~~~~s~iiiTtr~~~-~~~~-~~~~~~~~l~~l~~~~~~~lf~~~ 164 (172)
.+..-++|+|+++. ....+.+...+......+++|+++.... +... ......+++.+++.++..+.+.+.
T Consensus 102 ~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~ 181 (340)
T 1sxj_C 102 STRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANV 181 (340)
T ss_dssp HBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHH
T ss_pred hhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEeccCCCHHHHHHHHHHH
Confidence 23467899999963 4456666666655556677777765432 1111 123347899999999887776643
No 46
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.86 E-value=3.4e-09 Score=74.36 Aligned_cols=48 Identities=17% Similarity=0.229 Sum_probs=40.9
Q ss_pred CCccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 26 NNHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 26 ~~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
-..++||+.+++.+.+++.... .+.+.|+|++|+|||+||+.+++...
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~---~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSRRT---KNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSS---SCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred cchhhcchHHHHHHHHHHhCCC---CCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3668999999999999887643 45779999999999999999999853
No 47
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.84 E-value=6.5e-08 Score=76.50 Aligned_cols=137 Identities=17% Similarity=0.237 Sum_probs=86.3
Q ss_pred CccccccchHHHHHHHhcC-----------CCCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc-------Ccc--c
Q 040354 27 NHLVGIESRTEEIESVLGV-----------GSTMNICKLGISGSGDIGKITIAGAIFNKITRRFEEF-------PNI--G 86 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~-----------~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~-------~~~--~ 86 (172)
+++-|.++..+.|.+.+.. +-.. ++-+.++|++|+|||.||++++++....|-.. ... .
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~-prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGes 226 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQ-PKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEG 226 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCC-CCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCC-CCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchH
Confidence 4577888888887764431 1222 57899999999999999999999977665444 111 2
Q ss_pred HHHHHHHh----CCCeeEEEEecCCCHH----------------hHHHHHhhccCCC--CCcEEEEEeCChhH-----HH
Q 040354 87 LNFQSKRL----TRKKLLIVFDDVHHPR----------------QIDCLIECLDWFA--SASRIIIISRDKQA-----LI 139 (172)
Q Consensus 87 ~~~~~~~l----~~~~~LlvlDdv~~~~----------------~~~~l~~~~~~~~--~~s~iiiTtr~~~~-----~~ 139 (172)
...++..+ ...+++|+||+++... .+..++..+.... .+..||.||...+. ..
T Consensus 227 e~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllR 306 (405)
T 4b4t_J 227 SRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLR 306 (405)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHS
T ss_pred HHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcC
Confidence 33333333 4568999999997320 1344444444332 34445666654322 21
Q ss_pred hcCCCceEEcCCCCHHHHHHHHhhh
Q 040354 140 SCGVNKIYQMQELVHADALKLFSEC 164 (172)
Q Consensus 140 ~~~~~~~~~l~~l~~~~~~~lf~~~ 164 (172)
.-..+..+.+...+.++..++|..+
T Consensus 307 pGRfD~~I~i~lPd~~~R~~Il~~~ 331 (405)
T 4b4t_J 307 PGRIDRKIEFPPPSVAARAEILRIH 331 (405)
T ss_dssp TTSSCCEEECCCCCHHHHHHHHHHH
T ss_pred CCcCceEEEcCCcCHHHHHHHHHHH
Confidence 1124567899999999888888654
No 48
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.82 E-value=8.8e-09 Score=88.90 Aligned_cols=132 Identities=11% Similarity=0.130 Sum_probs=77.3
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhc--------c--ccCc--Ccc---------
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITR--------R--FEEF--PNI--------- 85 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~--------~--f~~~--~~~--------- 85 (172)
+.++||+.+++.+.+.|.... ...+.|+|++|+|||+||+.++..+.. . +-.. ..+
T Consensus 170 d~viGr~~~i~~l~~~l~~~~---~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~ 246 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRT---KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGE 246 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSS---CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------C
T ss_pred cccCCcHHHHHHHHHHHhcCC---CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchH
Confidence 568999999999999887643 346789999999999999999998532 1 1100 111
Q ss_pred cHHHHHHH----hC-CCeeEEEEecCCCHH----------hHHHHHhhccCCCCCcEEEEEeCChhHH-----Hhc-CCC
Q 040354 86 GLNFQSKR----LT-RKKLLIVFDDVHHPR----------QIDCLIECLDWFASASRIIIISRDKQAL-----ISC-GVN 144 (172)
Q Consensus 86 ~~~~~~~~----l~-~~~~LlvlDdv~~~~----------~~~~l~~~~~~~~~~s~iiiTtr~~~~~-----~~~-~~~ 144 (172)
....+... -. +++.+|++|+++... ..+.+...+.. ....+|.+|...... ..+ ...
T Consensus 247 ~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~--~~i~~I~at~~~~~~~~~~d~aL~rRf 324 (854)
T 1qvr_A 247 FEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR--GELRLIGATTLDEYREIEKDPALERRF 324 (854)
T ss_dssp HHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT--TCCCEEEEECHHHHHHHTTCTTTCSCC
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC--CCeEEEEecCchHHhhhccCHHHHhCC
Confidence 11122222 22 357899999997542 12233333322 233455555433321 111 122
Q ss_pred ceEEcCCCCHHHHHHHHhh
Q 040354 145 KIYQMQELVHADALKLFSE 163 (172)
Q Consensus 145 ~~~~l~~l~~~~~~~lf~~ 163 (172)
..+.+.+++.++..+++..
T Consensus 325 ~~i~l~~p~~~e~~~iL~~ 343 (854)
T 1qvr_A 325 QPVYVDEPTVEETISILRG 343 (854)
T ss_dssp CCEEECCCCHHHHHHHHHH
T ss_pred ceEEeCCCCHHHHHHHHHh
Confidence 4589999999999888853
No 49
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.80 E-value=4.4e-08 Score=74.32 Aligned_cols=134 Identities=12% Similarity=0.113 Sum_probs=80.2
Q ss_pred CccccccchHHHHHHHhcC------------CCCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc-----C--cc--
Q 040354 27 NHLVGIESRTEEIESVLGV------------GSTMNICKLGISGSGDIGKITIAGAIFNKITRRFEEF-----P--NI-- 85 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~------------~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~-----~--~~-- 85 (172)
+.++|++..++.+...+.. .... ...+.|+|++|+|||++|+.+++.....|-.. . ..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~-~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~ 93 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVT-PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG 93 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCC-CCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCC-CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccC
Confidence 4588999988888876653 0111 46788999999999999999999864433221 0 00
Q ss_pred --cHHHHHHHhC---------CCeeEEEEecCCCHH--h------------HHHHHhhccCC----------CCCcEEEE
Q 040354 86 --GLNFQSKRLT---------RKKLLIVFDDVHHPR--Q------------IDCLIECLDWF----------ASASRIII 130 (172)
Q Consensus 86 --~~~~~~~~l~---------~~~~LlvlDdv~~~~--~------------~~~l~~~~~~~----------~~~s~iii 130 (172)
....+...+. ..+.+|+||+++... . .+.+...+... ..+..+|.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~ 173 (310)
T 1ofh_A 94 KEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIA 173 (310)
T ss_dssp GSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEE
T ss_pred ccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEE
Confidence 1122222221 236799999996432 1 34444443321 12344555
Q ss_pred EeC----C-----hhHHHhcCCCceEEcCCCCHHHHHHHHhh
Q 040354 131 ISR----D-----KQALISCGVNKIYQMQELVHADALKLFSE 163 (172)
Q Consensus 131 Ttr----~-----~~~~~~~~~~~~~~l~~l~~~~~~~lf~~ 163 (172)
++. . ..+... ....+.+++++.++..+++.+
T Consensus 174 ~~~~~~~~~~~l~~~l~~R--~~~~i~~~~~~~~~~~~il~~ 213 (310)
T 1ofh_A 174 SGAFQVARPSDLIPELQGR--LPIRVELTALSAADFERILTE 213 (310)
T ss_dssp EECCSSSCGGGSCHHHHHT--CCEEEECCCCCHHHHHHHHHS
T ss_pred cCCcccCCcccCCHHHHhh--CCceEEcCCcCHHHHHHHHHh
Confidence 541 1 112222 224689999999999888874
No 50
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.80 E-value=5.4e-09 Score=78.19 Aligned_cols=140 Identities=12% Similarity=0.183 Sum_probs=81.8
Q ss_pred CCCccccccchHHHHHHHhcC----------CCCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc--Cc--------
Q 040354 25 NNNHLVGIESRTEEIESVLGV----------GSTMNICKLGISGSGDIGKITIAGAIFNKITRRFEEF--PN-------- 84 (172)
Q Consensus 25 ~~~~~~Gr~~~~~~l~~~l~~----------~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~--~~-------- 84 (172)
.-+.++|.+..++.+.+.+.. .... .+.+.|+|++|+|||+||+.+++.....|-.. .+
T Consensus 9 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~ 87 (268)
T 2r62_A 9 RFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKI-PKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGL 87 (268)
T ss_dssp CSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCC-CSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSCSSS
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCC-CceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhhcch
Confidence 346799999888888776541 1111 34588999999999999999999865444332 00
Q ss_pred ---ccHHHHHHHhCCCeeEEEEecCCCHH-----------------hHHHHHhhccCCC---CCcEEEEEeCChhHHH-h
Q 040354 85 ---IGLNFQSKRLTRKKLLIVFDDVHHPR-----------------QIDCLIECLDWFA---SASRIIIISRDKQALI-S 140 (172)
Q Consensus 85 ---~~~~~~~~~l~~~~~LlvlDdv~~~~-----------------~~~~l~~~~~~~~---~~s~iiiTtr~~~~~~-~ 140 (172)
.....+.......+.+|+||+++... .+..++..+.... ....||.||....... .
T Consensus 88 ~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~~ 167 (268)
T 2r62_A 88 GASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPA 167 (268)
T ss_dssp CSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSCGG
T ss_pred HHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhcCHh
Confidence 01222333333456899999996431 1222332222211 1244666665443211 1
Q ss_pred -c---CCCceEEcCCCCHHHHHHHHhhhc
Q 040354 141 -C---GVNKIYQMQELVHADALKLFSECA 165 (172)
Q Consensus 141 -~---~~~~~~~l~~l~~~~~~~lf~~~a 165 (172)
. .....+.+...+.++..+++....
T Consensus 168 l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 168 LMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp GGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred HcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 1 123457888888888888776553
No 51
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.79 E-value=3.4e-07 Score=70.85 Aligned_cols=132 Identities=11% Similarity=0.139 Sum_probs=86.4
Q ss_pred ccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhccc----------------------cCc----C--
Q 040354 32 IESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITRRF----------------------EEF----P-- 83 (172)
Q Consensus 32 r~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f----------------------~~~----~-- 83 (172)
.++..+.+.+.+..+.- ...+.++|++|+|||++|+.+++.+.... +.. .
T Consensus 7 ~~~~~~~l~~~i~~~~~--~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~ 84 (334)
T 1a5t_A 7 LRPDFEKLVASYQAGRG--HHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG 84 (334)
T ss_dssp GHHHHHHHHHHHHTTCC--CSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT
T ss_pred hHHHHHHHHHHHHcCCc--ceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc
Confidence 34556667776665442 36899999999999999999998843211 000 1
Q ss_pred --cccHHHHHH---Hh-----CCCeeEEEEecCCC--HHhHHHHHhhccCCCCCcEEEEEeCChh-HHHh-cCCCceEEc
Q 040354 84 --NIGLNFQSK---RL-----TRKKLLIVFDDVHH--PRQIDCLIECLDWFASASRIIIISRDKQ-ALIS-CGVNKIYQM 149 (172)
Q Consensus 84 --~~~~~~~~~---~l-----~~~~~LlvlDdv~~--~~~~~~l~~~~~~~~~~s~iiiTtr~~~-~~~~-~~~~~~~~l 149 (172)
+...+.+++ .+ .+++-++|+|+++. ....+.+...+....+.+.+|++|.+.. +... ......+++
T Consensus 85 ~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~ 164 (334)
T 1a5t_A 85 KNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYL 164 (334)
T ss_dssp CSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEEC
T ss_pred CCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeC
Confidence 122333333 22 23567899999974 4557777777766556677777776543 2222 234568999
Q ss_pred CCCCHHHHHHHHhhhc
Q 040354 150 QELVHADALKLFSECA 165 (172)
Q Consensus 150 ~~l~~~~~~~lf~~~a 165 (172)
.+++.++..+++.+..
T Consensus 165 ~~~~~~~~~~~L~~~~ 180 (334)
T 1a5t_A 165 APPPEQYAVTWLSREV 180 (334)
T ss_dssp CCCCHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHhc
Confidence 9999999988877653
No 52
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.78 E-value=1.3e-07 Score=80.51 Aligned_cols=134 Identities=16% Similarity=0.094 Sum_probs=81.2
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhcc-cc----------Cc-C-----c-c---
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITRR-FE----------EF-P-----N-I--- 85 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~-f~----------~~-~-----~-~--- 85 (172)
+.++||+.+++.+.+.|.... ...+.|+|++|+|||++|+.++..+... .. .. . . .
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~---~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~ 262 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRR---KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGD 262 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS---SCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSC
T ss_pred CCccCCHHHHHHHHHHHhccC---CCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccch
Confidence 468999999999999988654 3567899999999999999999885221 00 00 0 0 0
Q ss_pred cHHHHHHH----hCCCeeEEEEecCCCH--------HhH--HHHHhhccCCCCCcEEEEEeCChhHHHhc-------CCC
Q 040354 86 GLNFQSKR----LTRKKLLIVFDDVHHP--------RQI--DCLIECLDWFASASRIIIISRDKQALISC-------GVN 144 (172)
Q Consensus 86 ~~~~~~~~----l~~~~~LlvlDdv~~~--------~~~--~~l~~~~~~~~~~s~iiiTtr~~~~~~~~-------~~~ 144 (172)
....++.. ...++.+|++|+++.. ... ..++..+.. .....+|.+|......... ...
T Consensus 263 ~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-~~~~~~I~at~~~~~~~~~~~d~aL~~Rf 341 (758)
T 1r6b_X 263 FEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTYQEFSNIFEKDRALARRF 341 (758)
T ss_dssp HHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-SCCCEEEEEECHHHHHCCCCCTTSSGGGE
T ss_pred HHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-CCCeEEEEEeCchHHhhhhhcCHHHHhCc
Confidence 11222222 2345789999999744 122 222222211 1344566666543322111 112
Q ss_pred ceEEcCCCCHHHHHHHHhhh
Q 040354 145 KIYQMQELVHADALKLFSEC 164 (172)
Q Consensus 145 ~~~~l~~l~~~~~~~lf~~~ 164 (172)
..+.+.+.+.++..+++...
T Consensus 342 ~~i~v~~p~~~e~~~il~~l 361 (758)
T 1r6b_X 342 QKIDITEPSIEETVQIINGL 361 (758)
T ss_dssp EEEECCCCCHHHHHHHHHHH
T ss_pred eEEEcCCCCHHHHHHHHHHH
Confidence 36889999999988877643
No 53
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.78 E-value=7.9e-08 Score=76.91 Aligned_cols=137 Identities=18% Similarity=0.246 Sum_probs=85.3
Q ss_pred CccccccchHHHHHHHhcC-----------CCCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc--C-----cc--c
Q 040354 27 NHLVGIESRTEEIESVLGV-----------GSTMNICKLGISGSGDIGKITIAGAIFNKITRRFEEF--P-----NI--G 86 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~-----------~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~--~-----~~--~ 86 (172)
+++.|.++..+.|.+.+.. +-.. ++-+.+||++|+|||.||++++++....|-.. . .. .
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~-prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Ges 259 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKP-PKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGES 259 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCC-CCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSHH
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCC-CCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchHH
Confidence 5677888888777664431 1222 57899999999999999999999976665443 1 11 2
Q ss_pred HHHHHHH----hCCCeeEEEEecCCCH----------------HhHHHHHhhccCCC--CCcEEEEEeCChhHH-Hhc-C
Q 040354 87 LNFQSKR----LTRKKLLIVFDDVHHP----------------RQIDCLIECLDWFA--SASRIIIISRDKQAL-ISC-G 142 (172)
Q Consensus 87 ~~~~~~~----l~~~~~LlvlDdv~~~----------------~~~~~l~~~~~~~~--~~s~iiiTtr~~~~~-~~~-~ 142 (172)
...++.. -...+++|+||+++.. ..+..++..+.... .+..||.||...+.+ ..+ .
T Consensus 260 e~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllR 339 (437)
T 4b4t_L 260 ARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLR 339 (437)
T ss_dssp HHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTS
T ss_pred HHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhC
Confidence 2233333 2356899999999732 11334444443222 345566676544322 221 1
Q ss_pred ---CCceEEcCCCCHHHHHHHHhhh
Q 040354 143 ---VNKIYQMQELVHADALKLFSEC 164 (172)
Q Consensus 143 ---~~~~~~l~~l~~~~~~~lf~~~ 164 (172)
-...+.+...+.++..++|..+
T Consensus 340 pGRfD~~I~i~lPd~~~R~~Il~~~ 364 (437)
T 4b4t_L 340 PGRLDRKVEIPLPNEAGRLEIFKIH 364 (437)
T ss_dssp TTSEEEEECCCCCCHHHHHHHHHHH
T ss_pred CCccceeeecCCcCHHHHHHHHHHH
Confidence 2346888888888888877654
No 54
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.78 E-value=1.4e-07 Score=75.76 Aligned_cols=137 Identities=18% Similarity=0.265 Sum_probs=85.4
Q ss_pred CccccccchHHHHHHHhcC-----------CCCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc--Cc-----c--c
Q 040354 27 NHLVGIESRTEEIESVLGV-----------GSTMNICKLGISGSGDIGKITIAGAIFNKITRRFEEF--PN-----I--G 86 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~-----------~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~--~~-----~--~ 86 (172)
+++-|.++..+.|.+.+.. +-.. ++-+.++|++|+|||.||++++++....|-.. .+ + .
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~p-prGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGes 287 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDP-PKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEG 287 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCC-CSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSHH
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCC-CCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCCHH
Confidence 4677888888888764421 1222 68899999999999999999999976665444 11 1 2
Q ss_pred HHHHHHH----hCCCeeEEEEecCCCH----------------HhHHHHHhhccCCC--CCcEEEEEeCChhHH-Hhc--
Q 040354 87 LNFQSKR----LTRKKLLIVFDDVHHP----------------RQIDCLIECLDWFA--SASRIIIISRDKQAL-ISC-- 141 (172)
Q Consensus 87 ~~~~~~~----l~~~~~LlvlDdv~~~----------------~~~~~l~~~~~~~~--~~s~iiiTtr~~~~~-~~~-- 141 (172)
...++.. -...+++|+||+++.. .....++..+.... .+..||.||.....+ ..+
T Consensus 288 ek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlR 367 (467)
T 4b4t_H 288 ARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLR 367 (467)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHS
T ss_pred HHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhc
Confidence 2333333 3456899999999732 01233444443332 233455566433211 111
Q ss_pred --CCCceEEcCCCCHHHHHHHHhhh
Q 040354 142 --GVNKIYQMQELVHADALKLFSEC 164 (172)
Q Consensus 142 --~~~~~~~l~~l~~~~~~~lf~~~ 164 (172)
.....+++...+.++-.++|+.+
T Consensus 368 pGRFD~~I~i~lPd~~~R~~Ilk~~ 392 (467)
T 4b4t_H 368 PGRIDRKVEFSLPDLEGRANIFRIH 392 (467)
T ss_dssp TTTCCEEECCCCCCHHHHHHHHHHH
T ss_pred cccccEEEEeCCcCHHHHHHHHHHH
Confidence 24567889999998888888654
No 55
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.77 E-value=4.2e-08 Score=79.31 Aligned_cols=132 Identities=11% Similarity=0.081 Sum_probs=78.5
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhccc----------cCc-------Ccc---c
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITRRF----------EEF-------PNI---G 86 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f----------~~~-------~~~---~ 86 (172)
+.++||+.+++.+...+.... ...+.|+|++|+|||++|+.++..+...+ -.. ..+ .
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~---~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~e~~~ 256 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT---KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRL 256 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS---SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------CTTH
T ss_pred CCccCcHHHHHHHHHHHhccC---CCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCccccchHHHHH
Confidence 569999999999999987643 34678999999999999999999863321 100 011 1
Q ss_pred HHHHHHHhCCCeeEEEEecCCCHHhHHHHHhhccCCCCCcEEEEEeCChhHHHh-------cCCCceEEcCCCCHHHHHH
Q 040354 87 LNFQSKRLTRKKLLIVFDDVHHPRQIDCLIECLDWFASASRIIIISRDKQALIS-------CGVNKIYQMQELVHADALK 159 (172)
Q Consensus 87 ~~~~~~~l~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~~s~iiiTtr~~~~~~~-------~~~~~~~~l~~l~~~~~~~ 159 (172)
...+...-..++.+|++| ...+..+.+...+. ....++|.+|........ ......+.+.+.+.++..+
T Consensus 257 ~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v~~p~~e~~~~ 332 (468)
T 3pxg_A 257 KKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQ 332 (468)
T ss_dssp HHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHH
T ss_pred HHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhcCHHHHHhCccceeCCCCHHHHHH
Confidence 223333334567899999 22222333333332 123455555543331111 1123468999999999999
Q ss_pred HHhhhc
Q 040354 160 LFSECA 165 (172)
Q Consensus 160 lf~~~a 165 (172)
++....
T Consensus 333 iL~~~~ 338 (468)
T 3pxg_A 333 ILQGLR 338 (468)
T ss_dssp HHHHTT
T ss_pred HHHHHH
Confidence 887543
No 56
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.76 E-value=9.7e-08 Score=73.14 Aligned_cols=131 Identities=12% Similarity=0.153 Sum_probs=86.9
Q ss_pred cccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHh----ccccCc----C--cccHHHHHH---HhC--
Q 040354 31 GIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKIT----RRFEEF----P--NIGLNFQSK---RLT-- 95 (172)
Q Consensus 31 Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~----~~f~~~----~--~~~~~~~~~---~l~-- 95 (172)
|.++.++.+.+.+..+. .+.+.++|++|+||||+|+.+.+... .+.+.. + +...+.+++ .+.
T Consensus 1 g~~~~~~~L~~~i~~~~---~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~ 77 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE---GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYS 77 (305)
T ss_dssp ---CHHHHHHHHHHTCS---SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSC
T ss_pred ChHHHHHHHHHHHHCCC---CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhc
Confidence 45667778888887655 47999999999999999999987521 111111 1 223333333 222
Q ss_pred ---CCeeEEEEecCC--CHHhHHHHHhhccCCCCCcEEEEEeCCh-hHHHhcCCCceEEcCCCCHHHHHHHHhhhc
Q 040354 96 ---RKKLLIVFDDVH--HPRQIDCLIECLDWFASASRIIIISRDK-QALISCGVNKIYQMQELVHADALKLFSECA 165 (172)
Q Consensus 96 ---~~~~LlvlDdv~--~~~~~~~l~~~~~~~~~~s~iiiTtr~~-~~~~~~~~~~~~~l~~l~~~~~~~lf~~~a 165 (172)
+++-++|+|+++ +....+.|+..+....+.+.+|++|.+. .+...+... .+++.++++++..+++.+..
T Consensus 78 p~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 78 PELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp CSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCHHHHHHHHHHH
T ss_pred cccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHHHHHHHHHHHh
Confidence 345689999997 4556788888887666677777776544 344444344 89999999999998886653
No 57
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.75 E-value=9.1e-08 Score=71.43 Aligned_cols=48 Identities=19% Similarity=0.129 Sum_probs=34.6
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
+.++|....+..+.+.+..-... ...+.|+|++|+|||++|+.+++..
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~-~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPL-DKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTS-CSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred ccceeCCHHHHHHHHHHHHHhCC-CCCEEEECCCCCcHHHHHHHHHHhc
Confidence 45789998888887766532112 3578899999999999999999874
No 58
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.72 E-value=5e-08 Score=68.73 Aligned_cols=45 Identities=20% Similarity=0.094 Sum_probs=32.1
Q ss_pred ccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 32 IESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 32 r~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
++..++.+.+++..-.......+.|+|++|+||||||+.+++.+.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 444555555555533222146899999999999999999999853
No 59
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.72 E-value=3.4e-09 Score=72.30 Aligned_cols=105 Identities=10% Similarity=0.036 Sum_probs=60.3
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc--CcccHHHHHHHhC-CCeeEEEE
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITRRFEEF--PNIGLNFQSKRLT-RKKLLIVF 103 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~--~~~~~~~~~~~l~-~~~~Llvl 103 (172)
-.++|+...++.+.+.+..-... ...+.|+|++|+|||++|+.+++... .|-.. .++........+. .+.-.|++
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~-~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~l~l 81 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKR-TSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDMPMELLQKAEGGVLYV 81 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTC-SSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHCHHHHHHHTTTSEEEE
T ss_pred cCceeCCHHHHHHHHHHHHHhCC-CCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHhhhhHHHhCCCCeEEE
Confidence 35789998888888876531111 35688999999999999999987644 33322 1111111122221 23457899
Q ss_pred ecCCCH--HhHHHHHhhccCC-CCCcEEEEEeC
Q 040354 104 DDVHHP--RQIDCLIECLDWF-ASASRIIIISR 133 (172)
Q Consensus 104 Ddv~~~--~~~~~l~~~~~~~-~~~s~iiiTtr 133 (172)
|+++.. +....+...+... ....++|.||.
T Consensus 82 Dei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn 114 (143)
T 3co5_A 82 GDIAQYSRNIQTGITFIIGKAERCRVRVIASCS 114 (143)
T ss_dssp EECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEE
T ss_pred eChHHCCHHHHHHHHHHHHhCCCCCEEEEEecC
Confidence 999743 4444454444322 24567777764
No 60
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.72 E-value=9.1e-08 Score=71.11 Aligned_cols=139 Identities=12% Similarity=0.141 Sum_probs=79.1
Q ss_pred CCccccccchHHHHHHHhc---CC------CCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc--Ccc-------c-
Q 040354 26 NNHLVGIESRTEEIESVLG---VG------STMNICKLGISGSGDIGKITIAGAIFNKITRRFEEF--PNI-------G- 86 (172)
Q Consensus 26 ~~~~~Gr~~~~~~l~~~l~---~~------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~--~~~-------~- 86 (172)
-++++|.+...+.+.+.+. .. .....+-+.|+|++|+||||||+.+++.....|-.. .++ .
T Consensus 11 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~~~~~~ 90 (257)
T 1lv7_A 11 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGA 90 (257)
T ss_dssp GGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCCCCCH
T ss_pred HHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHhhhhhH
Confidence 3678898877776655432 11 001134688999999999999999999865443222 111 1
Q ss_pred ---HHHHHHHhCCCeeEEEEecCCCH----------------HhHHHHHhhccCC--CCCcEEEEEeCChhHH-Hhc---
Q 040354 87 ---LNFQSKRLTRKKLLIVFDDVHHP----------------RQIDCLIECLDWF--ASASRIIIISRDKQAL-ISC--- 141 (172)
Q Consensus 87 ---~~~~~~~l~~~~~LlvlDdv~~~----------------~~~~~l~~~~~~~--~~~s~iiiTtr~~~~~-~~~--- 141 (172)
...+.......+.++++|+++.. .....++..+... ..+..||.||...... ..+
T Consensus 91 ~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~~l~r~ 170 (257)
T 1lv7_A 91 SRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRP 170 (257)
T ss_dssp HHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGGST
T ss_pred HHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCHHHcCC
Confidence 22233333345679999999421 1233343333322 2344566666544321 111
Q ss_pred -CCCceEEcCCCCHHHHHHHHhhh
Q 040354 142 -GVNKIYQMQELVHADALKLFSEC 164 (172)
Q Consensus 142 -~~~~~~~l~~l~~~~~~~lf~~~ 164 (172)
.....+.+...+.++-.+++...
T Consensus 171 ~rf~~~i~i~~P~~~~r~~il~~~ 194 (257)
T 1lv7_A 171 GRFDRQVVVGLPDVRGREQILKVH 194 (257)
T ss_dssp TSSCEEEECCCCCHHHHHHHHHHH
T ss_pred CcCCeEEEeCCCCHHHHHHHHHHH
Confidence 12346778888888877776654
No 61
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.70 E-value=1.1e-07 Score=81.10 Aligned_cols=131 Identities=11% Similarity=0.093 Sum_probs=79.4
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhcc----------ccCc-------Ccc---c
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITRR----------FEEF-------PNI---G 86 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~----------f~~~-------~~~---~ 86 (172)
+.++||+.+++.+...|.... ...+.|+|++|+|||++|+.++..+... |... ... .
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~---~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g~~~~G~~e~~l 256 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT---KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRL 256 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS---SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------CTTH
T ss_pred CCccCchHHHHHHHHHHhCCC---CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecccccccchHHHHH
Confidence 569999999999999987644 3467899999999999999999985221 1100 111 2
Q ss_pred HHHHHHHhCCCeeEEEEecCCCHHhHHHHHhhccCCCCCcEEEEEeCChhHHHh-------cCCCceEEcCCCCHHHHHH
Q 040354 87 LNFQSKRLTRKKLLIVFDDVHHPRQIDCLIECLDWFASASRIIIISRDKQALIS-------CGVNKIYQMQELVHADALK 159 (172)
Q Consensus 87 ~~~~~~~l~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~~s~iiiTtr~~~~~~~-------~~~~~~~~l~~l~~~~~~~ 159 (172)
...+......++.+|++| ...+..+.+...+. ....++|.+|........ ......+.+...+.++..+
T Consensus 257 ~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al~rRf~~i~v~~p~~~~~~~ 332 (758)
T 3pxi_A 257 KKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQ 332 (758)
T ss_dssp HHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHH
T ss_pred HHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHH
Confidence 333344444567899999 22232333333332 123456655544332111 0122568999999999999
Q ss_pred HHhhh
Q 040354 160 LFSEC 164 (172)
Q Consensus 160 lf~~~ 164 (172)
++...
T Consensus 333 il~~~ 337 (758)
T 3pxi_A 333 ILQGL 337 (758)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 88744
No 62
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.70 E-value=1.7e-07 Score=75.81 Aligned_cols=138 Identities=13% Similarity=0.148 Sum_probs=83.1
Q ss_pred CccccccchHHHHHHHhc---CC------CCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc--Cc----c------
Q 040354 27 NHLVGIESRTEEIESVLG---VG------STMNICKLGISGSGDIGKITIAGAIFNKITRRFEEF--PN----I------ 85 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~---~~------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~--~~----~------ 85 (172)
+++.|.++.++.+.+.+. .. ....++-+.|+|++|+|||+||+.+++.....|-.. .+ +
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~g~~~~ 95 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAA 95 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCTTHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHhcccHH
Confidence 568898887777766443 11 011134588999999999999999999865544332 11 1
Q ss_pred -cHHHHHHHhCCCeeEEEEecCCCH----------------HhHHHHHhhccCCC--CCcEEEEEeCChhHHH-h-cC--
Q 040354 86 -GLNFQSKRLTRKKLLIVFDDVHHP----------------RQIDCLIECLDWFA--SASRIIIISRDKQALI-S-CG-- 142 (172)
Q Consensus 86 -~~~~~~~~l~~~~~LlvlDdv~~~----------------~~~~~l~~~~~~~~--~~s~iiiTtr~~~~~~-~-~~-- 142 (172)
....+.......+.+|+||+++.. ..+..++..+.... .+..||.+|...+.+. . ..
T Consensus 96 ~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~g 175 (476)
T 2ce7_A 96 RVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPG 175 (476)
T ss_dssp HHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTT
T ss_pred HHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccC
Confidence 123333334456889999999532 12344444333222 3456677776654332 1 11
Q ss_pred -CCceEEcCCCCHHHHHHHHhhh
Q 040354 143 -VNKIYQMQELVHADALKLFSEC 164 (172)
Q Consensus 143 -~~~~~~l~~l~~~~~~~lf~~~ 164 (172)
....+.+...+.++-.+++..+
T Consensus 176 RFd~~i~i~~Pd~~~R~~Il~~~ 198 (476)
T 2ce7_A 176 RFDKKIVVDPPDMLGRKKILEIH 198 (476)
T ss_dssp SSCEEEECCCCCHHHHHHHHHHH
T ss_pred cceeEeecCCCCHHHHHHHHHHH
Confidence 2347788888888777777654
No 63
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.70 E-value=3.7e-07 Score=69.80 Aligned_cols=48 Identities=17% Similarity=0.245 Sum_probs=37.5
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
+.++|+...+..+.+.+..-... ...+.|+|++|+|||++|+.+++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~-~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPS-DATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCST-TSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCC-CCcEEEECCCCchHHHHHHHHHHhC
Confidence 45789999999888877632222 3578899999999999999999863
No 64
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.70 E-value=1e-07 Score=76.20 Aligned_cols=137 Identities=15% Similarity=0.228 Sum_probs=84.2
Q ss_pred CccccccchHHHHHHHhc----C-------CCCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc--Cc-----c--c
Q 040354 27 NHLVGIESRTEEIESVLG----V-------GSTMNICKLGISGSGDIGKITIAGAIFNKITRRFEEF--PN-----I--G 86 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~----~-------~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~--~~-----~--~ 86 (172)
+++.|.++..+.|.+.+. . +-.. ++-+.+|||||+|||.||++++++....|-.. .+ . .
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~-prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGes 259 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRA-PKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEG 259 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCC-CCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCC-CCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccchH
Confidence 567788888888776432 1 1122 67899999999999999999999976665444 11 1 2
Q ss_pred HHHHHHHh----CCCeeEEEEecCCCH-------H---------hHHHHHhhccCCC--CCcEEEEEeCChhHH-Hhc--
Q 040354 87 LNFQSKRL----TRKKLLIVFDDVHHP-------R---------QIDCLIECLDWFA--SASRIIIISRDKQAL-ISC-- 141 (172)
Q Consensus 87 ~~~~~~~l----~~~~~LlvlDdv~~~-------~---------~~~~l~~~~~~~~--~~s~iiiTtr~~~~~-~~~-- 141 (172)
...++..+ ...+++|+||+++.. . ....++..+.... .+..||.||...+.+ ..+
T Consensus 260 e~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllR 339 (434)
T 4b4t_M 260 AKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLR 339 (434)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCS
T ss_pred HHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhc
Confidence 23333333 236899999999622 0 1334444444333 233455566544322 221
Q ss_pred --CCCceEEcCCCCHHHHHHHHhhh
Q 040354 142 --GVNKIYQMQELVHADALKLFSEC 164 (172)
Q Consensus 142 --~~~~~~~l~~l~~~~~~~lf~~~ 164 (172)
.....+.++..+.++..++|..+
T Consensus 340 pGRfD~~I~i~lPd~~~R~~Il~~~ 364 (434)
T 4b4t_M 340 SGRLDRKIEFPLPSEDSRAQILQIH 364 (434)
T ss_dssp TTSEEEEEECCCCCHHHHHHHHHHH
T ss_pred CCceeEEEEeCCcCHHHHHHHHHHH
Confidence 12346889988988888877643
No 65
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=98.69 E-value=2e-07 Score=70.89 Aligned_cols=57 Identities=18% Similarity=0.167 Sum_probs=39.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhccccCc------Ccc---cHHHHHHHh--------CCCeeEEEEecCC
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKITRRFEEF------PNI---GLNFQSKRL--------TRKKLLIVFDDVH 107 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~------~~~---~~~~~~~~l--------~~~~~LlvlDdv~ 107 (172)
+..+.|+|++|+|||+||+.+++.....|-.. ... ....++..+ ...+.+|+||+++
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD 109 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLD 109 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechh
Confidence 56889999999999999999999876554433 111 112222222 4467899999996
No 66
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.66 E-value=2.2e-07 Score=74.24 Aligned_cols=136 Identities=16% Similarity=0.267 Sum_probs=79.5
Q ss_pred CccccccchHHHHHHHhcC-----------CCCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc-------Ccc--c
Q 040354 27 NHLVGIESRTEEIESVLGV-----------GSTMNICKLGISGSGDIGKITIAGAIFNKITRRFEEF-------PNI--G 86 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~-----------~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~-------~~~--~ 86 (172)
+++.|.++..+.|.+.+.. +-.. ++-+.++|++|+|||+||++++++....|-.. ... .
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~-prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~ 250 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDP-PRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEG 250 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCC-CCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCC-CceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchh
Confidence 4677888888877664431 2222 57799999999999999999999976665444 111 2
Q ss_pred HHHHHHHh----CCCeeEEEEecCCCH----------------HhHHHHHhhccCC--CCCcEEEEEeCChhHH-Hhc-C
Q 040354 87 LNFQSKRL----TRKKLLIVFDDVHHP----------------RQIDCLIECLDWF--ASASRIIIISRDKQAL-ISC-G 142 (172)
Q Consensus 87 ~~~~~~~l----~~~~~LlvlDdv~~~----------------~~~~~l~~~~~~~--~~~s~iiiTtr~~~~~-~~~-~ 142 (172)
...++..+ ...++++++|+++.. ..+..++..+... ..+..||.||...+.. ..+ .
T Consensus 251 e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~AllR 330 (428)
T 4b4t_K 251 PRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLR 330 (428)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHHHHS
T ss_pred HHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcChhhhc
Confidence 23333333 456899999999521 1134444444322 2344566666543321 111 1
Q ss_pred ---CCceEEcCCC-CHHHHHHHHhh
Q 040354 143 ---VNKIYQMQEL-VHADALKLFSE 163 (172)
Q Consensus 143 ---~~~~~~l~~l-~~~~~~~lf~~ 163 (172)
....+++..+ +.++-..+|..
T Consensus 331 pGRfd~~I~~p~lPd~~~R~~Il~~ 355 (428)
T 4b4t_K 331 PGRLDRKIEFPSLRDRRERRLIFGT 355 (428)
T ss_dssp SSSEEEEEECCSSCCHHHHHHHHHH
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHH
Confidence 2345777655 44555555543
No 67
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.63 E-value=1.7e-07 Score=74.60 Aligned_cols=137 Identities=17% Similarity=0.252 Sum_probs=83.5
Q ss_pred CccccccchHHHHHHHhc----C-------CCCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc-------Ccc--c
Q 040354 27 NHLVGIESRTEEIESVLG----V-------GSTMNICKLGISGSGDIGKITIAGAIFNKITRRFEEF-------PNI--G 86 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~----~-------~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~-------~~~--~ 86 (172)
+++-|.++..+.|.+.+. . +-.. ++-+.++|++|+|||.||++++++....|-.. ..+ .
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~-prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGes 260 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKP-PKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDG 260 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCC-CSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHH
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCC-CCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchH
Confidence 456688877777766442 1 1122 57899999999999999999999977665444 111 2
Q ss_pred HHHHHHHh----CCCeeEEEEecCCCH----------------HhHHHHHhhccCCC--CCcEEEEEeCChhHH-Hhc-C
Q 040354 87 LNFQSKRL----TRKKLLIVFDDVHHP----------------RQIDCLIECLDWFA--SASRIIIISRDKQAL-ISC-G 142 (172)
Q Consensus 87 ~~~~~~~l----~~~~~LlvlDdv~~~----------------~~~~~l~~~~~~~~--~~s~iiiTtr~~~~~-~~~-~ 142 (172)
...++..+ ...+++|+||+++.. ..+..++..+.... .+..||.||...+.+ ..+ .
T Consensus 261 ek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlR 340 (437)
T 4b4t_I 261 PRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIR 340 (437)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSC
T ss_pred HHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhc
Confidence 23333332 356899999999622 12334444443322 344556666544332 222 1
Q ss_pred ---CCceEEcCCCCHHHHHHHHhhh
Q 040354 143 ---VNKIYQMQELVHADALKLFSEC 164 (172)
Q Consensus 143 ---~~~~~~l~~l~~~~~~~lf~~~ 164 (172)
.+..+.+..-+.++..++|..+
T Consensus 341 pGRfD~~I~v~lPd~~~R~~Il~~~ 365 (437)
T 4b4t_I 341 PGRIDRKILFENPDLSTKKKILGIH 365 (437)
T ss_dssp TTTEEEEECCCCCCHHHHHHHHHHH
T ss_pred CCceeEEEEcCCcCHHHHHHHHHHH
Confidence 2345788888888888887654
No 68
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.63 E-value=1.1e-06 Score=66.71 Aligned_cols=49 Identities=14% Similarity=0.276 Sum_probs=37.8
Q ss_pred CccccccchHHHHHHHhcCC------CCCCeeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 27 NHLVGIESRTEEIESVLGVG------STMNICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
..++|.+..++.+...+... .......+.|+|++|+|||++|+.++...
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHH
Confidence 45789998888887766532 11113589999999999999999999985
No 69
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.56 E-value=8.9e-07 Score=75.47 Aligned_cols=138 Identities=12% Similarity=0.195 Sum_probs=79.9
Q ss_pred CccccccchHHHHHHHhcCC------CCCCeeEEEEEcCCCchHHHHHHHHHHHHhc---cccCc------Ccc--cHHH
Q 040354 27 NHLVGIESRTEEIESVLGVG------STMNICKLGISGSGDIGKITIAGAIFNKITR---RFEEF------PNI--GLNF 89 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~---~f~~~------~~~--~~~~ 89 (172)
..++|.+..++.+...+... .......+.++|++|+|||++|+.++..... .|-.. +.. ....
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~~~~ 570 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSGGQ 570 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC---
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccccch
Confidence 45889998888887766521 1111347999999999999999999998522 22111 111 1111
Q ss_pred HHHHhC-CCeeEEEEecCCC--HHhHHHHHhhccCC-----------CCCcEEEEEeCC-----hhH----HHhc-----
Q 040354 90 QSKRLT-RKKLLIVFDDVHH--PRQIDCLIECLDWF-----------ASASRIIIISRD-----KQA----LISC----- 141 (172)
Q Consensus 90 ~~~~l~-~~~~LlvlDdv~~--~~~~~~l~~~~~~~-----------~~~s~iiiTtr~-----~~~----~~~~----- 141 (172)
+...+. ....+|+||+++. .+.++.|+..+... ....+||.||.. ..+ ...+
T Consensus 571 l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~ 650 (758)
T 3pxi_A 571 LTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFI 650 (758)
T ss_dssp CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHH
T ss_pred hhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHH
Confidence 222222 2345899999973 44455555544321 134578888862 111 1111
Q ss_pred C-CCceEEcCCCCHHHHHHHHhhh
Q 040354 142 G-VNKIYQMQELVHADALKLFSEC 164 (172)
Q Consensus 142 ~-~~~~~~l~~l~~~~~~~lf~~~ 164 (172)
. ....+.+.+++.++...++...
T Consensus 651 ~Rl~~~i~~~~l~~~~~~~i~~~~ 674 (758)
T 3pxi_A 651 NRIDEIIVFHSLEKKHLTEIVSLM 674 (758)
T ss_dssp TTSSEEEECC--CHHHHHHHHHHH
T ss_pred hhCCeEEecCCCCHHHHHHHHHHH
Confidence 1 2358899999999888876543
No 70
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.51 E-value=3.4e-08 Score=67.88 Aligned_cols=80 Identities=14% Similarity=0.099 Sum_probs=46.1
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhcc-ccCc----CcccHHHHHHHhCCCeeEEEEecCCCH--HhHHHHHhhccCC-
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKITRR-FEEF----PNIGLNFQSKRLTRKKLLIVFDDVHHP--RQIDCLIECLDWF- 122 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~-f~~~----~~~~~~~~~~~l~~~~~LlvlDdv~~~--~~~~~l~~~~~~~- 122 (172)
...++|+|++|+|||||++.+++..... +... .++... .+..+.-+||+||+... ...+.+...+...
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~----~~~~~~~lLilDE~~~~~~~~~~~l~~li~~~~ 111 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT----DAAFEAEYLAVDQVEKLGNEEQALLFSIFNRFR 111 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC----GGGGGCSEEEEESTTCCCSHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH----HHHhCCCEEEEeCccccChHHHHHHHHHHHHHH
Confidence 4689999999999999999999985432 1010 122111 12234568999999632 1122233222211
Q ss_pred CCCc-EEEEEeCC
Q 040354 123 ASAS-RIIIISRD 134 (172)
Q Consensus 123 ~~~s-~iiiTtr~ 134 (172)
..|. ++|+||+.
T Consensus 112 ~~g~~~iiits~~ 124 (149)
T 2kjq_A 112 NSGKGFLLLGSEY 124 (149)
T ss_dssp HHTCCEEEEEESS
T ss_pred HcCCcEEEEECCC
Confidence 1233 48888874
No 71
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=98.49 E-value=7.6e-07 Score=68.46 Aligned_cols=134 Identities=11% Similarity=0.171 Sum_probs=79.9
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc---CcccHHHHHHH----------
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITRRFEEF---PNIGLNFQSKR---------- 93 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~---~~~~~~~~~~~---------- 93 (172)
..++|++..++.+...+... ..+.|+|++|+|||+||+.+.+.....|... .+.....+...
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~-----~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~~~~~~~~~~~ 101 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG-----GHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGTMIYNQHKGNF 101 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT-----CCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEEEEEETTTTEE
T ss_pred cceeCcHHHHHHHHHHHHcC-----CeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCceeecCCCCce
Confidence 56899999988888776642 4788999999999999999998765443321 11111111100
Q ss_pred -hCCC---eeEEEEecCCC--HHhHHHHHhhccC-----------CCCCcEEEEEeCChh------HHHh-cCC-CceEE
Q 040354 94 -LTRK---KLLIVFDDVHH--PRQIDCLIECLDW-----------FASASRIIIISRDKQ------ALIS-CGV-NKIYQ 148 (172)
Q Consensus 94 -l~~~---~~LlvlDdv~~--~~~~~~l~~~~~~-----------~~~~s~iiiTtr~~~------~~~~-~~~-~~~~~ 148 (172)
+..+ ..++++|+++. ......+...+.. ......|+.|+.... +... ... ...+.
T Consensus 102 ~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~ 181 (331)
T 2r44_A 102 EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRFMMKIH 181 (331)
T ss_dssp EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHTTSSEEEE
T ss_pred EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHhheeEEEE
Confidence 0001 25899999973 3444444443321 123344555655221 1111 122 23588
Q ss_pred cCCCCHHHHHHHHhhhc
Q 040354 149 MQELVHADALKLFSECA 165 (172)
Q Consensus 149 l~~l~~~~~~~lf~~~a 165 (172)
+.+.+.++-.+++.+..
T Consensus 182 i~~p~~~~~~~il~~~~ 198 (331)
T 2r44_A 182 LTYLDKESELEVMRRVS 198 (331)
T ss_dssp CCCCCHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHhcc
Confidence 99999999988887654
No 72
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.49 E-value=1.2e-07 Score=67.79 Aligned_cols=51 Identities=18% Similarity=0.135 Sum_probs=34.3
Q ss_pred Ccccccc----chHHHHHHHhcCCCCC-CeeEEEEEcCCCchHHHHHHHHHHHHhc
Q 040354 27 NHLVGIE----SRTEEIESVLGVGSTM-NICKLGISGSGDIGKITIAGAIFNKITR 77 (172)
Q Consensus 27 ~~~~Gr~----~~~~~l~~~l~~~~~~-~~~~i~I~G~~GiGKTtLa~~~~~~~~~ 77 (172)
+.|++.. ..++.+.+++...... ....+.|+|++|+|||+||+.+++....
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~ 80 (202)
T 2w58_A 25 SDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAK 80 (202)
T ss_dssp TSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred hhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4556543 2445555666533211 1268999999999999999999998543
No 73
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.48 E-value=1.4e-06 Score=67.38 Aligned_cols=139 Identities=13% Similarity=0.177 Sum_probs=78.2
Q ss_pred CccccccchHHHHHHHhcCC--CCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc-Ccc--cHHHHHHHhC--CCee
Q 040354 27 NHLVGIESRTEEIESVLGVG--STMNICKLGISGSGDIGKITIAGAIFNKITRRFEEF-PNI--GLNFQSKRLT--RKKL 99 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~--~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~-~~~--~~~~~~~~l~--~~~~ 99 (172)
+.++|.+..++.+...+... .+.....+.|+|++|+||||||+.+++.+...|... ... ....+...+. ..+.
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~ 104 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGD 104 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTC
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCC
Confidence 56789888888877666532 111146799999999999999999999875443321 111 1222222221 2345
Q ss_pred EEEEecCCCH--HhHHHHHhhccCCC------------------CCcEEEE-EeCChhHHHhc--CCCceEEcCCCCHHH
Q 040354 100 LIVFDDVHHP--RQIDCLIECLDWFA------------------SASRIII-ISRDKQALISC--GVNKIYQMQELVHAD 156 (172)
Q Consensus 100 LlvlDdv~~~--~~~~~l~~~~~~~~------------------~~s~iii-Ttr~~~~~~~~--~~~~~~~l~~l~~~~ 156 (172)
++++|+++.. ...+.+...+.... +...++- |++...+...+ .......+++.+.++
T Consensus 105 v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~ 184 (334)
T 1in4_A 105 VLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKE 184 (334)
T ss_dssp EEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHH
T ss_pred EEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHHhcCceeeCCCCCHHH
Confidence 7888988642 23344433222111 0112222 33332221111 123357899999999
Q ss_pred HHHHHhhhc
Q 040354 157 ALKLFSECA 165 (172)
Q Consensus 157 ~~~lf~~~a 165 (172)
..+++.+.+
T Consensus 185 l~~iL~~~~ 193 (334)
T 1in4_A 185 LKEIIKRAA 193 (334)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887653
No 74
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.47 E-value=1.5e-06 Score=71.51 Aligned_cols=132 Identities=17% Similarity=0.203 Sum_probs=73.8
Q ss_pred cccccchHHHHHHHhc----CCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc-----Cc----------c---c
Q 040354 29 LVGIESRTEEIESVLG----VGSTMNICKLGISGSGDIGKITIAGAIFNKITRRFEEF-----PN----------I---G 86 (172)
Q Consensus 29 ~~Gr~~~~~~l~~~l~----~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~-----~~----------~---~ 86 (172)
++|.++..+.+.+.+. ..... ...+.|+|++|+||||||+.++......|... .+ . .
T Consensus 83 i~G~~~vk~~i~~~~~l~~~~~~~~-g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~ 161 (543)
T 3m6a_A 83 HHGLEKVKERILEYLAVQKLTKSLK-GPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAM 161 (543)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSSCC-SCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC------------------
T ss_pred hccHHHHHHHHHHHHHHHHhcccCC-CCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccC
Confidence 6777766666644332 11112 46899999999999999999999865443222 00 0 0
Q ss_pred HHHHHHHh---CCCeeEEEEecCCCHH------hHHHHHhhccCCC---------------CCcEEEEEeCChh-----H
Q 040354 87 LNFQSKRL---TRKKLLIVFDDVHHPR------QIDCLIECLDWFA---------------SASRIIIISRDKQ-----A 137 (172)
Q Consensus 87 ~~~~~~~l---~~~~~LlvlDdv~~~~------~~~~l~~~~~~~~---------------~~s~iiiTtr~~~-----~ 137 (172)
...+...+ ....-+++||+++... ....++..+.... ....+|.||.... +
T Consensus 162 ~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL 241 (543)
T 3m6a_A 162 PGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPL 241 (543)
T ss_dssp --CHHHHHHTTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHH
T ss_pred chHHHHHHHHhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHH
Confidence 11111111 1133488899997432 1233333332111 2235666655432 2
Q ss_pred HHhcCCCceEEcCCCCHHHHHHHHhhh
Q 040354 138 LISCGVNKIYQMQELVHADALKLFSEC 164 (172)
Q Consensus 138 ~~~~~~~~~~~l~~l~~~~~~~lf~~~ 164 (172)
...+ ..+++.+++.++-.+++.++
T Consensus 242 ~~R~---~vi~~~~~~~~e~~~Il~~~ 265 (543)
T 3m6a_A 242 RDRM---EIINIAGYTEIEKLEIVKDH 265 (543)
T ss_dssp HHHE---EEEECCCCCHHHHHHHHHHT
T ss_pred Hhhc---ceeeeCCCCHHHHHHHHHHH
Confidence 3332 47899999999988887664
No 75
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.47 E-value=5.9e-07 Score=76.79 Aligned_cols=139 Identities=12% Similarity=0.114 Sum_probs=84.5
Q ss_pred CccccccchHHHHHHHhc----CC------CCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc------Cc-c----
Q 040354 27 NHLVGIESRTEEIESVLG----VG------STMNICKLGISGSGDIGKITIAGAIFNKITRRFEEF------PN-I---- 85 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~----~~------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~------~~-~---- 85 (172)
+++-|.++.++.|.+++. .. .-..++-+.++|++|+|||+||++++++...+|-.. .. .
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~gese 283 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESE 283 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTTHHH
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccchHHH
Confidence 356788888888776543 11 111267899999999999999999999866655443 11 1
Q ss_pred --cHHHHHHHhCCCeeEEEEecCCCH-------------HhHHHHHhhccCCC--CCcEEEEEeCChhHH-Hhc----CC
Q 040354 86 --GLNFQSKRLTRKKLLIVFDDVHHP-------------RQIDCLIECLDWFA--SASRIIIISRDKQAL-ISC----GV 143 (172)
Q Consensus 86 --~~~~~~~~l~~~~~LlvlDdv~~~-------------~~~~~l~~~~~~~~--~~s~iiiTtr~~~~~-~~~----~~ 143 (172)
+...+.......+++|+||+++.. .....++..+.... .+..||.+|...+.. ..+ .-
T Consensus 284 ~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRF 363 (806)
T 3cf2_A 284 SNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRF 363 (806)
T ss_dssp HHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSS
T ss_pred HHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCccc
Confidence 233333334557899999999632 11333433333222 233455555443322 222 13
Q ss_pred CceEEcCCCCHHHHHHHHhhhc
Q 040354 144 NKIYQMQELVHADALKLFSECA 165 (172)
Q Consensus 144 ~~~~~l~~l~~~~~~~lf~~~a 165 (172)
...+++...+.++-.++|..+.
T Consensus 364 d~~I~i~~Pd~~~R~~IL~~~l 385 (806)
T 3cf2_A 364 DREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp CEEEECCCCCHHHHHHHHHHTC
T ss_pred ceEEecCCCCHHHHHHHHHHHh
Confidence 4578899999988888887653
No 76
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=98.40 E-value=4.4e-06 Score=65.39 Aligned_cols=52 Identities=13% Similarity=0.139 Sum_probs=37.8
Q ss_pred CccccccchHHHHHHHhc----C------------------------CCCCCeeEEEEEcCCCchHHHHHHHHHHHHhcc
Q 040354 27 NHLVGIESRTEEIESVLG----V------------------------GSTMNICKLGISGSGDIGKITIAGAIFNKITRR 78 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~----~------------------------~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 78 (172)
+.++|.+...+.|...+. . .... ...+.|+|++|+|||++|+.+++.....
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~-~~~ill~Gp~GtGKT~la~~la~~l~~~ 99 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELS-KSNILLIGPTGSGKTLMAQTLAKHLDIP 99 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCC-CCCEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccC-CCCEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 457888888887776651 0 0111 3578999999999999999999986544
Q ss_pred c
Q 040354 79 F 79 (172)
Q Consensus 79 f 79 (172)
|
T Consensus 100 ~ 100 (376)
T 1um8_A 100 I 100 (376)
T ss_dssp E
T ss_pred E
Confidence 4
No 77
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.39 E-value=5.2e-06 Score=70.73 Aligned_cols=138 Identities=9% Similarity=0.195 Sum_probs=81.9
Q ss_pred CccccccchHHHHHHHhcC------CCCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc------C-----c-----
Q 040354 27 NHLVGIESRTEEIESVLGV------GSTMNICKLGISGSGDIGKITIAGAIFNKITRRFEEF------P-----N----- 84 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~------~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~------~-----~----- 84 (172)
..++|.+..++.+...+.. ........+.++|++|+|||++|+.+++.....|-.. + .
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~ 537 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAP 537 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCC
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCC
Confidence 4578988888877776542 1111145799999999999999999998864332211 0 0
Q ss_pred --c-c---HHHHHHHhC-CCeeEEEEecCCC--HHhHHHHHhhccCCC-----------CCcEEEEEeCChh--------
Q 040354 85 --I-G---LNFQSKRLT-RKKLLIVFDDVHH--PRQIDCLIECLDWFA-----------SASRIIIISRDKQ-------- 136 (172)
Q Consensus 85 --~-~---~~~~~~~l~-~~~~LlvlDdv~~--~~~~~~l~~~~~~~~-----------~~s~iiiTtr~~~-------- 136 (172)
. . ...+...+. ....+|+||+++. .+.++.|+..+.... ....||.||....
T Consensus 538 ~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~ 617 (758)
T 1r6b_X 538 PGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSI 617 (758)
T ss_dssp SCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC-------
T ss_pred CCCcCccccchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchhhhhhccc
Confidence 0 0 011222222 3457999999974 444555555444211 2344777765310
Q ss_pred --------------HHHh-----cC-CCceEEcCCCCHHHHHHHHhhh
Q 040354 137 --------------ALIS-----CG-VNKIYQMQELVHADALKLFSEC 164 (172)
Q Consensus 137 --------------~~~~-----~~-~~~~~~l~~l~~~~~~~lf~~~ 164 (172)
+... +. ....+.+.+++.++...++...
T Consensus 618 g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~ 665 (758)
T 1r6b_X 618 GLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKF 665 (758)
T ss_dssp ----------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHH
T ss_pred CccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHH
Confidence 0011 11 2357899999999888877653
No 78
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.38 E-value=5.9e-06 Score=67.23 Aligned_cols=142 Identities=13% Similarity=0.163 Sum_probs=83.3
Q ss_pred CCCCccccccchHHHHHHHhc---CC------CCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc--Ccc-------
Q 040354 24 ENNNHLVGIESRTEEIESVLG---VG------STMNICKLGISGSGDIGKITIAGAIFNKITRRFEEF--PNI------- 85 (172)
Q Consensus 24 ~~~~~~~Gr~~~~~~l~~~l~---~~------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~--~~~------- 85 (172)
..-++++|.+..+..+.+... .. .-...+-+.|+|++|+||||||+.++......|-.. .++
T Consensus 28 ~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~g~ 107 (499)
T 2dhr_A 28 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGV 107 (499)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCTTH
T ss_pred CCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhhhh
Confidence 344678998877776665432 11 001123489999999999999999999865443222 111
Q ss_pred cHHHHHHHhCC----CeeEEEEecCCCH----------------HhHHHHHhhccCCC--CCcEEEEEeCChhHHHh-c-
Q 040354 86 GLNFQSKRLTR----KKLLIVFDDVHHP----------------RQIDCLIECLDWFA--SASRIIIISRDKQALIS-C- 141 (172)
Q Consensus 86 ~~~~~~~~l~~----~~~LlvlDdv~~~----------------~~~~~l~~~~~~~~--~~s~iiiTtr~~~~~~~-~- 141 (172)
....++..+.. .+.++++|+++.. ..+..++..+.... ....++.+|.....+.. +
T Consensus 108 ~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~aLl 187 (499)
T 2dhr_A 108 GAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALL 187 (499)
T ss_dssp HHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTTTS
T ss_pred HHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcccc
Confidence 23445555544 2479999999521 11344444443222 23344555555543221 1
Q ss_pred ---CCCceEEcCCCCHHHHHHHHhhhc
Q 040354 142 ---GVNKIYQMQELVHADALKLFSECA 165 (172)
Q Consensus 142 ---~~~~~~~l~~l~~~~~~~lf~~~a 165 (172)
.....+.+...+.++-.+++..++
T Consensus 188 r~gRfdr~i~i~~Pd~~~R~~IL~~~~ 214 (499)
T 2dhr_A 188 RPGRFDRQIAIDAPDVKGREQILRIHA 214 (499)
T ss_dssp STTSSCCEEECCCCCHHHHHHHHHHTT
T ss_pred cccccceEEecCCCCHHHHHHHHHHHH
Confidence 123478899999988888887654
No 79
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.37 E-value=2.6e-06 Score=63.08 Aligned_cols=140 Identities=12% Similarity=0.157 Sum_probs=76.4
Q ss_pred CCccccccchHHHHHHHhc---CC------CCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc--Ccc-------cH
Q 040354 26 NNHLVGIESRTEEIESVLG---VG------STMNICKLGISGSGDIGKITIAGAIFNKITRRFEEF--PNI-------GL 87 (172)
Q Consensus 26 ~~~~~Gr~~~~~~l~~~l~---~~------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~--~~~-------~~ 87 (172)
-++++|.+.....+.+... .. .-...+-+.|+|++|+|||||++.+++.....|-.. .++ ..
T Consensus 15 ~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~ 94 (254)
T 1ixz_A 15 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGA 94 (254)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSCTTHHH
T ss_pred HHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHHHhhHHH
Confidence 3568888766666554332 10 000023389999999999999999998765433222 000 11
Q ss_pred HHHHHHh----CCCeeEEEEecCCCHH----------------hHHHHHhhccCCCC-C-cEEEEEeCChhHHHh-c---
Q 040354 88 NFQSKRL----TRKKLLIVFDDVHHPR----------------QIDCLIECLDWFAS-A-SRIIIISRDKQALIS-C--- 141 (172)
Q Consensus 88 ~~~~~~l----~~~~~LlvlDdv~~~~----------------~~~~l~~~~~~~~~-~-s~iiiTtr~~~~~~~-~--- 141 (172)
..+...+ ...+.++++|+++... ....+...+..... . .-++.+|........ +
T Consensus 95 ~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~ 174 (254)
T 1ixz_A 95 ARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRP 174 (254)
T ss_dssp HHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGST
T ss_pred HHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCC
Confidence 2222222 2346899999995221 12233333322222 2 234445555443321 1
Q ss_pred -CCCceEEcCCCCHHHHHHHHhhhc
Q 040354 142 -GVNKIYQMQELVHADALKLFSECA 165 (172)
Q Consensus 142 -~~~~~~~l~~l~~~~~~~lf~~~a 165 (172)
.....+.+...+.++-.+++...+
T Consensus 175 ~rf~~~i~i~~p~~~~r~~il~~~~ 199 (254)
T 1ixz_A 175 GRFDRQIAIDAPDVKGREQILRIHA 199 (254)
T ss_dssp TSSCEEEECCSCCHHHHHHHHHHHH
T ss_pred CcCCeEEeeCCcCHHHHHHHHHHHH
Confidence 234578899999988888776543
No 80
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.35 E-value=4.7e-07 Score=65.29 Aligned_cols=70 Identities=21% Similarity=0.208 Sum_probs=41.3
Q ss_pred HHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCcCcccHHHHHHHhCCCeeEEEEecCCC
Q 040354 36 TEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKITRRFEEFPNIGLNFQSKRLTRKKLLIVFDDVHH 108 (172)
Q Consensus 36 ~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~LlvlDdv~~ 108 (172)
+..+..++..... ...+.|+|++|+||||+|..+++.+..+.-..-+-........+.+.+ +++|||++.
T Consensus 45 ~~~l~~~~~~iPk--kn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~s~f~l~~l~~~k-IiiLDEad~ 114 (212)
T 1tue_A 45 LGALKSFLKGTPK--KNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNSTSHFWLEPLTDTK-VAMLDDATT 114 (212)
T ss_dssp HHHHHHHHHTCTT--CSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSSSCGGGGGGTTCS-SEEEEEECH
T ss_pred HHHHHHHHhcCCc--ccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEeccchhhhcccCCCC-EEEEECCCc
Confidence 5556666653221 246999999999999999999998754321110000000011223333 889999974
No 81
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.34 E-value=1.6e-06 Score=74.44 Aligned_cols=137 Identities=12% Similarity=0.146 Sum_probs=81.0
Q ss_pred CccccccchHHHHHHHhcC-----------CCCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc------Ccc----
Q 040354 27 NHLVGIESRTEEIESVLGV-----------GSTMNICKLGISGSGDIGKITIAGAIFNKITRRFEEF------PNI---- 85 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~-----------~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~------~~~---- 85 (172)
++++|.+..++.|.+++.. .-.. ...+.|+|++|+||||||+.+++.....|-.. ...
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~-~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~~g~~ 282 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKP-PRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGES 282 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCC-CCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSSTTHH
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCC-CCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhhhhhH
Confidence 5688999999988887652 1122 46799999999999999999998765443222 111
Q ss_pred ---cHHHHHHHhCCCeeEEEEecCCCH-------------HhHHHHHhhccCCC--CCcEEEEEeCChhHH-Hhc----C
Q 040354 86 ---GLNFQSKRLTRKKLLIVFDDVHHP-------------RQIDCLIECLDWFA--SASRIIIISRDKQAL-ISC----G 142 (172)
Q Consensus 86 ---~~~~~~~~l~~~~~LlvlDdv~~~-------------~~~~~l~~~~~~~~--~~s~iiiTtr~~~~~-~~~----~ 142 (172)
....++......+.++++|+++.. .....+...+.... ....+|.+|...... ..+ .
T Consensus 283 ~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~al~r~gR 362 (806)
T 1ypw_A 283 ESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGR 362 (806)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCTTTTSTTS
T ss_pred HHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcCHHHhcccc
Confidence 122223333345689999999421 11233333332221 234555566543222 111 1
Q ss_pred CCceEEcCCCCHHHHHHHHhhh
Q 040354 143 VNKIYQMQELVHADALKLFSEC 164 (172)
Q Consensus 143 ~~~~~~l~~l~~~~~~~lf~~~ 164 (172)
....+.+...+.++..+++...
T Consensus 363 f~~~i~i~~p~~~~r~~il~~~ 384 (806)
T 1ypw_A 363 FDREVDIGIPDATGRLEILQIH 384 (806)
T ss_dssp SCEEECCCCCCHHHHHHHHHHT
T ss_pred cccccccCCCCHHHHHHHHHHH
Confidence 2245778888888888877654
No 82
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.33 E-value=4.8e-06 Score=62.54 Aligned_cols=141 Identities=12% Similarity=0.169 Sum_probs=76.6
Q ss_pred CCCccccccchHHHHHHHhcC--C-------CCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc--Ccc-------c
Q 040354 25 NNNHLVGIESRTEEIESVLGV--G-------STMNICKLGISGSGDIGKITIAGAIFNKITRRFEEF--PNI-------G 86 (172)
Q Consensus 25 ~~~~~~Gr~~~~~~l~~~l~~--~-------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~--~~~-------~ 86 (172)
.-++++|.+...+.+.+.... . .-.-.+-+.|+|++|+|||||++.++......|-.. .++ .
T Consensus 38 ~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~ 117 (278)
T 1iy2_A 38 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVG 117 (278)
T ss_dssp CGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSTTTHH
T ss_pred CHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHHhhHH
Confidence 345688888776666554321 0 000012389999999999999999998865333222 010 1
Q ss_pred HHHHHHHh----CCCeeEEEEecCCCH------------H----hHHHHHhhccCCCC-C-cEEEEEeCChhHHH-h---
Q 040354 87 LNFQSKRL----TRKKLLIVFDDVHHP------------R----QIDCLIECLDWFAS-A-SRIIIISRDKQALI-S--- 140 (172)
Q Consensus 87 ~~~~~~~l----~~~~~LlvlDdv~~~------------~----~~~~l~~~~~~~~~-~-s~iiiTtr~~~~~~-~--- 140 (172)
...+...+ ...+.++++|+++.. . ....+...+..... . ..++.++....... .
T Consensus 118 ~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~l~r 197 (278)
T 1iy2_A 118 AARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLR 197 (278)
T ss_dssp HHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHHHHS
T ss_pred HHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHhHcC
Confidence 11222222 234689999999521 1 12233333322222 1 23344555443221 1
Q ss_pred -cCCCceEEcCCCCHHHHHHHHhhhc
Q 040354 141 -CGVNKIYQMQELVHADALKLFSECA 165 (172)
Q Consensus 141 -~~~~~~~~l~~l~~~~~~~lf~~~a 165 (172)
......+.+...+.++-.+++...+
T Consensus 198 ~~rf~~~i~i~~p~~~~r~~il~~~~ 223 (278)
T 1iy2_A 198 PGRFDRQIAIDAPDVKGREQILRIHA 223 (278)
T ss_dssp TTSSCCEEECCCCCHHHHHHHHHHHH
T ss_pred CCcCCeEEEeCCcCHHHHHHHHHHHH
Confidence 1234578899999988888776543
No 83
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.26 E-value=5.8e-06 Score=64.58 Aligned_cols=85 Identities=12% Similarity=0.117 Sum_probs=62.0
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhcc-------------ccCc-------------Ccc-cHHHHHHHhCCCeeEEEEe
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKITRR-------------FEEF-------------PNI-GLNFQSKRLTRKKLLIVFD 104 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~~~~-------------f~~~-------------~~~-~~~~~~~~l~~~~~LlvlD 104 (172)
.+++|.|+.|+|||||++.+...+... |... ... ....+...+...+=+|++|
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillD 203 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVG 203 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecC
Confidence 699999999999999999998874321 1000 111 4568888899999999999
Q ss_pred cCCCHHhHHHHHhhccCCCCCcEEEEEeCChhHHH
Q 040354 105 DVHHPRQIDCLIECLDWFASASRIIIISRDKQALI 139 (172)
Q Consensus 105 dv~~~~~~~~l~~~~~~~~~~s~iiiTtr~~~~~~ 139 (172)
++.+.+.+..+..... .|..|++|+++.+.+.
T Consensus 204 Ep~d~e~~~~~~~~~~---~G~~vl~t~H~~~~~~ 235 (356)
T 3jvv_A 204 EMRDLETIRLALTAAE---TGHLVFGTLHTTSAAK 235 (356)
T ss_dssp CCCSHHHHHHHHHHHH---TTCEEEEEESCSSHHH
T ss_pred CCCCHHHHHHHHHHHh---cCCEEEEEEccChHHH
Confidence 9998777766554432 4666999999876553
No 84
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.25 E-value=1.2e-06 Score=70.53 Aligned_cols=80 Identities=18% Similarity=0.187 Sum_probs=51.9
Q ss_pred CccccccchHHHHHHHh---cCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhc--cccCc-------Ccc-cHHHHHHH
Q 040354 27 NHLVGIESRTEEIESVL---GVGSTMNICKLGISGSGDIGKITIAGAIFNKITR--RFEEF-------PNI-GLNFQSKR 93 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l---~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~--~f~~~-------~~~-~~~~~~~~ 93 (172)
+.++|.+..++.+..++ ...... .+.+.++|++|+|||++|+.+++.... .|-.. ... -...+.+.
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~-~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMA-GRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMEN 115 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCT-TCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSSCHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCC-CCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhhhhhHHHHHH
Confidence 67899998877655443 333322 467899999999999999999998652 22222 111 11123333
Q ss_pred h-------CCCeeEEEEecCC
Q 040354 94 L-------TRKKLLIVFDDVH 107 (172)
Q Consensus 94 l-------~~~~~LlvlDdv~ 107 (172)
+ ...+.+|++|+++
T Consensus 116 f~~a~~~~~~~~~il~iDEid 136 (456)
T 2c9o_A 116 FRRAIGLRIKETKEVYEGEVT 136 (456)
T ss_dssp HHHTEEEEEEEEEEEEEEEEE
T ss_pred HHHHHhhhhcCCcEEEEechh
Confidence 2 2357899999996
No 85
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.23 E-value=1.7e-05 Score=59.68 Aligned_cols=138 Identities=17% Similarity=0.211 Sum_probs=76.4
Q ss_pred CccccccchHHHHHHHhc----C-------CCCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc--Ccc-------c
Q 040354 27 NHLVGIESRTEEIESVLG----V-------GSTMNICKLGISGSGDIGKITIAGAIFNKITRRFEEF--PNI-------G 86 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~----~-------~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~--~~~-------~ 86 (172)
+++.|.++..+.|.+.+. . .-.. .+-+.|+|++|+||||||+.++......|-.. .++ .
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~-~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~~~~~ 88 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVT-PAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGES 88 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCC-CSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSSTTHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCC-CCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhhhhHH
Confidence 456677766666655332 0 1111 23399999999999999999999754332221 111 1
Q ss_pred HHHHHHHh----CCCeeEEEEecCCCH-------------HhHHHHHhhccCCC--CCcEEEEEeCChhHHHh-c----C
Q 040354 87 LNFQSKRL----TRKKLLIVFDDVHHP-------------RQIDCLIECLDWFA--SASRIIIISRDKQALIS-C----G 142 (172)
Q Consensus 87 ~~~~~~~l----~~~~~LlvlDdv~~~-------------~~~~~l~~~~~~~~--~~s~iiiTtr~~~~~~~-~----~ 142 (172)
...+...+ ...+.++++|+++.. .....+...+.-.. ...-++.+|....+... + .
T Consensus 89 ~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gR 168 (274)
T 2x8a_A 89 ERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGR 168 (274)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTS
T ss_pred HHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCccc
Confidence 12222222 235689999999642 11233333332221 22334455655443321 1 2
Q ss_pred CCceEEcCCCCHHHHHHHHhhhc
Q 040354 143 VNKIYQMQELVHADALKLFSECA 165 (172)
Q Consensus 143 ~~~~~~l~~l~~~~~~~lf~~~a 165 (172)
-...+.+...+.++-.++|....
T Consensus 169 fd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 169 LDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp SCEEEECCSCCHHHHHHHHHHHT
T ss_pred CCeEEEeCCcCHHHHHHHHHHHH
Confidence 34578899999998888887654
No 86
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.19 E-value=2.4e-05 Score=58.58 Aligned_cols=119 Identities=12% Similarity=0.137 Sum_probs=64.4
Q ss_pred HHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHh--c--cccCcCcccHHHHHHHhCCCeeEEEEecCC---CH-H
Q 040354 39 IESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKIT--R--RFEEFPNIGLNFQSKRLTRKKLLIVFDDVH---HP-R 110 (172)
Q Consensus 39 l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~--~--~f~~~~~~~~~~~~~~l~~~~~LlvlDdv~---~~-~ 110 (172)
+..|+...... ...+.|+|++|+|||.+|.++++... . +|.. .... + .-+ ..+.+++.|+.. +. .
T Consensus 93 l~~~l~~~~~~-~n~~~l~GppgtGKt~~a~ala~~~~l~G~vn~~~-~~f~---l-~~~-~~k~i~l~Ee~~~~~d~~~ 165 (267)
T 1u0j_A 93 FLGWATKKFGK-RNTIWLFGPATTGKTNIAEAIAHTVPFYGCVNWTN-ENFP---F-NDC-VDKMVIWWEEGKMTAKVVE 165 (267)
T ss_dssp HHHHHTTCSTT-CCEEEEECSTTSSHHHHHHHHHHHSSCEEECCTTC-SSCT---T-GGG-SSCSEEEECSCCEETTTHH
T ss_pred HHHHHhCCCCC-CcEEEEECCCCCCHHHHHHHHHhhhcccceeeccc-cccc---c-ccc-cccEEEEeccccchhHHHH
Confidence 44555543122 35799999999999999999998621 1 1110 0000 0 001 234666677663 22 2
Q ss_pred hHHHHHh----hcc-CCC-----CCcEEEEEeCCh-------------hHHHhcCCCceEEcC--------CCCHHHHHH
Q 040354 111 QIDCLIE----CLD-WFA-----SASRIIIISRDK-------------QALISCGVNKIYQMQ--------ELVHADALK 159 (172)
Q Consensus 111 ~~~~l~~----~~~-~~~-----~~s~iiiTtr~~-------------~~~~~~~~~~~~~l~--------~l~~~~~~~ 159 (172)
.+..+.. .+. ... ....+|+||-.. ...........++.. ++++++...
T Consensus 166 ~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~s~~~~~~L~sR~~~f~F~~~~p~~~~~lt~~~~~~ 245 (267)
T 1u0j_A 166 SAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQDRMFKFELTRRLDHDFGKVTKQEVKD 245 (267)
T ss_dssp HHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEECTTHHHHHTTEEEEECCSCCCTTSCCCCHHHHHH
T ss_pred HHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCccchhhhHHHhhhEEEEECCCcCCcccCCCCHHHHHH
Confidence 3344432 011 111 445789988761 111112334456666 899999999
Q ss_pred HHhhh
Q 040354 160 LFSEC 164 (172)
Q Consensus 160 lf~~~ 164 (172)
+|...
T Consensus 246 f~~w~ 250 (267)
T 1u0j_A 246 FFRWA 250 (267)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88754
No 87
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.17 E-value=1.7e-06 Score=66.32 Aligned_cols=42 Identities=17% Similarity=0.138 Sum_probs=30.2
Q ss_pred hHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 35 RTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 35 ~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
.++.+.+++..........+.|+|++|+|||+||..+++...
T Consensus 136 ~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 136 AFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp HHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 444555666532211136899999999999999999999854
No 88
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.13 E-value=2.6e-05 Score=67.35 Aligned_cols=48 Identities=15% Similarity=0.276 Sum_probs=36.7
Q ss_pred ccccccchHHHHHHHhcCC------CCCCeeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 28 HLVGIESRTEEIESVLGVG------STMNICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 28 ~~~Gr~~~~~~l~~~l~~~------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
.++|.+..++.+...+... .......+.|+|++|+|||++|+.+++..
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689888888887766421 11113689999999999999999999985
No 89
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.04 E-value=7.5e-06 Score=70.03 Aligned_cols=138 Identities=13% Similarity=0.135 Sum_probs=75.3
Q ss_pred CccccccchHHHHHHHhcCC----------CCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc-------Ccc--cH
Q 040354 27 NHLVGIESRTEEIESVLGVG----------STMNICKLGISGSGDIGKITIAGAIFNKITRRFEEF-------PNI--GL 87 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~----------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~-------~~~--~~ 87 (172)
.++.|.++..+.|.+.+... .-...+-+.++|++|+|||.+|++++++....|-.. ... ..
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese 556 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESE 556 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCH
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHH
Confidence 34567777777776654311 111146688999999999999999999866655443 111 23
Q ss_pred HHHHHHh----CCCeeEEEEecCCCH---------H-------hHHHHHhhccCCCCCc--EEEEEe-CChhHHHhc---
Q 040354 88 NFQSKRL----TRKKLLIVFDDVHHP---------R-------QIDCLIECLDWFASAS--RIIIIS-RDKQALISC--- 141 (172)
Q Consensus 88 ~~~~~~l----~~~~~LlvlDdv~~~---------~-------~~~~l~~~~~~~~~~s--~iiiTt-r~~~~~~~~--- 141 (172)
..++..+ ...+++|+||+++.. . ....|+..+.-..... -||-|| |...+-..+
T Consensus 557 ~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRp 636 (806)
T 3cf2_A 557 ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRP 636 (806)
T ss_dssp HHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHST
T ss_pred HHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCC
Confidence 3344333 446899999999632 0 1344554444333322 233344 332221111
Q ss_pred -CCCceEEcCCCCHHHHHHHHhhh
Q 040354 142 -GVNKIYQMQELVHADALKLFSEC 164 (172)
Q Consensus 142 -~~~~~~~l~~l~~~~~~~lf~~~ 164 (172)
.-...+.+..-+.++-.++|+.+
T Consensus 637 gRfd~~i~v~lPd~~~R~~il~~~ 660 (806)
T 3cf2_A 637 GRLDQLIYIPLPDEKSRVAILKAN 660 (806)
T ss_dssp TTSCCEEEC-----CHHHHTTTTT
T ss_pred CcceEEEEECCcCHHHHHHHHHHH
Confidence 23456778777777777777654
No 90
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.98 E-value=1.9e-06 Score=73.95 Aligned_cols=139 Identities=14% Similarity=0.167 Sum_probs=79.4
Q ss_pred CccccccchHHHHHHHhcCC----------CCCCeeEEEEEcCCCchHHHHHHHHHHHHhccccCc--Cc-----c--cH
Q 040354 27 NHLVGIESRTEEIESVLGVG----------STMNICKLGISGSGDIGKITIAGAIFNKITRRFEEF--PN-----I--GL 87 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~----------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~--~~-----~--~~ 87 (172)
.++.|.+...+.+.+.+... .-.....+.++|++|+|||+||+.++......|-.. .+ . ..
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~ 556 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESE 556 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSS
T ss_pred cccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCccH
Confidence 45778888888887766421 001145689999999999999999999876555433 11 1 12
Q ss_pred HHHHHHh----CCCeeEEEEecCCCH----------------HhHHHHHhhccCCC--CCcEEEEEeCChh-HHHhc---
Q 040354 88 NFQSKRL----TRKKLLIVFDDVHHP----------------RQIDCLIECLDWFA--SASRIIIISRDKQ-ALISC--- 141 (172)
Q Consensus 88 ~~~~~~l----~~~~~LlvlDdv~~~----------------~~~~~l~~~~~~~~--~~s~iiiTtr~~~-~~~~~--- 141 (172)
..++..+ ...+.+|+||+++.. .....++..+.... .+..||.||.... +-..+
T Consensus 557 ~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ld~allrp 636 (806)
T 1ypw_A 557 ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRP 636 (806)
T ss_dssp HHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGGGSCTTSSG
T ss_pred HHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCcccCCHHHhCc
Confidence 2222222 224579999998532 11344444443222 2233455554332 22211
Q ss_pred -CCCceEEcCCCCHHHHHHHHhhhc
Q 040354 142 -GVNKIYQMQELVHADALKLFSECA 165 (172)
Q Consensus 142 -~~~~~~~l~~l~~~~~~~lf~~~a 165 (172)
.....+.+...+.++..+++..+.
T Consensus 637 gRf~~~i~~~~p~~~~r~~Il~~~l 661 (806)
T 1ypw_A 637 GRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp GGTTSCCCCCCCCCSHHHHHTTTTT
T ss_pred cccCceeecCCCCHHHHHHHHHHHh
Confidence 122456788888888888877654
No 91
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.95 E-value=3.9e-05 Score=57.29 Aligned_cols=85 Identities=9% Similarity=0.115 Sum_probs=55.9
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhccccCc-------------C------------c-c-cHHHHHHHhCCCeeEEEE
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKITRRFEEF-------------P------------N-I-GLNFQSKRLTRKKLLIVF 103 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~-------------~------------~-~-~~~~~~~~l~~~~~Llvl 103 (172)
..+++|+|+.|+|||||++.+...+...+... . + . ....+...+..++-+|++
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~illl 104 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIFV 104 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEEEE
T ss_pred CCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEEEe
Confidence 47999999999999999999888642210000 0 0 0 234556666667778999
Q ss_pred ecCCCHHhHHHHHhhccCCCCCcEEEEEeCChhHH
Q 040354 104 DDVHHPRQIDCLIECLDWFASASRIIIISRDKQAL 138 (172)
Q Consensus 104 Ddv~~~~~~~~l~~~~~~~~~~s~iiiTtr~~~~~ 138 (172)
|+..+.+....+.... ..|.-|++|+++.+..
T Consensus 105 DEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~~~ 136 (261)
T 2eyu_A 105 GEMRDLETVETALRAA---ETGHLVFGTLHTNTAI 136 (261)
T ss_dssp SCCCSHHHHHHHHHHH---HTTCEEEEEECCSSHH
T ss_pred CCCCCHHHHHHHHHHH---ccCCEEEEEeCcchHH
Confidence 9997665554444332 2466689999876543
No 92
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.95 E-value=3.2e-05 Score=53.91 Aligned_cols=20 Identities=30% Similarity=0.338 Sum_probs=18.1
Q ss_pred eeEEEEEcCCCchHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGA 70 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~ 70 (172)
..+++|+|++|+|||||++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 36899999999999999993
No 93
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.84 E-value=1.8e-05 Score=61.64 Aligned_cols=52 Identities=13% Similarity=0.126 Sum_probs=38.7
Q ss_pred ccccccchHHHHHHHhc-------------CCCCCCeeEEEEEcCCCchHHHHHHHHHHHHhcccc
Q 040354 28 HLVGIESRTEEIESVLG-------------VGSTMNICKLGISGSGDIGKITIAGAIFNKITRRFE 80 (172)
Q Consensus 28 ~~~Gr~~~~~~l~~~l~-------------~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~ 80 (172)
.++|.+..++.+...+. ..... ...+.|+|++|+|||++|+.+++.....|-
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~-~~~vll~GppGtGKT~la~~ia~~~~~~~~ 80 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELG-KSNILLIGPTGSGKTLLAETLARLLDVPFT 80 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCC-CCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCC-CCeEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence 36888888888877662 11112 467899999999999999999998654443
No 94
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.84 E-value=2e-05 Score=56.33 Aligned_cols=44 Identities=23% Similarity=0.273 Sum_probs=32.5
Q ss_pred ccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 32 IESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 32 r~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
|++.++.+.+.+.........+++|.|++|+||||+++.+...+
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 44556667666654322225799999999999999999998764
No 95
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.82 E-value=0.00012 Score=57.46 Aligned_cols=84 Identities=10% Similarity=0.107 Sum_probs=57.7
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhc----cc---------cCc------C------cc--cHHHHHHHhCCCeeEEEE
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKITR----RF---------EEF------P------NI--GLNFQSKRLTRKKLLIVF 103 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~~----~f---------~~~------~------~~--~~~~~~~~l~~~~~Llvl 103 (172)
..++.|+|+.|+||||+++.+...+.. +. ... . +. ....++..+...+-+|++
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~ill 215 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIFV 215 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCEEEE
Confidence 478999999999999999999886422 11 000 0 11 566777888778889999
Q ss_pred ecCCCHHhHHHHHhhccCCCCCcEEEEEeCChhH
Q 040354 104 DDVHHPRQIDCLIECLDWFASASRIIIISRDKQA 137 (172)
Q Consensus 104 Ddv~~~~~~~~l~~~~~~~~~~s~iiiTtr~~~~ 137 (172)
|++.+.+.+....... ..|..|+.|++..+.
T Consensus 216 dE~~d~e~~~~~l~~~---~~g~~vi~t~H~~~~ 246 (372)
T 2ewv_A 216 GEMRDLETVETALRAA---ETGHLVFGTLHTNTA 246 (372)
T ss_dssp SCCCSHHHHHHHHHHH---TTTCEEEECCCCCSH
T ss_pred CCCCCHHHHHHHHHHH---hcCCEEEEEECcchH
Confidence 9998766655444332 245568888887553
No 96
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.74 E-value=1.8e-05 Score=55.17 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=22.3
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
.+|.|+|++|+||||+|+.+.....
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 6899999999999999999988643
No 97
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.71 E-value=3.2e-05 Score=54.71 Aligned_cols=82 Identities=13% Similarity=0.022 Sum_probs=46.3
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH-hccccC---------c--------------Ccc---cHHHHHHHhCCCeeEEEEe
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKI-TRRFEE---------F--------------PNI---GLNFQSKRLTRKKLLIVFD 104 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~-~~~f~~---------~--------------~~~---~~~~~~~~l~~~~~LlvlD 104 (172)
.++.++|++|+||||++..++... ...... . ... ....+.+.+.++.-+|++|
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~~~~~dvviID 83 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEEMRKYIEEDTRGVFID 83 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCCEECC----CEECEEESSGGGGGGGCCTTEEEEEEC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcccEEecCCCceeeEEECCHHHHHHHhcCCCCEEEEE
Confidence 588999999999999996666542 111100 0 000 1111222233345699999
Q ss_pred cCCCH--HhHHHHHhhccCCCCCcEEEEEeCChh
Q 040354 105 DVHHP--RQIDCLIECLDWFASASRIIIISRDKQ 136 (172)
Q Consensus 105 dv~~~--~~~~~l~~~~~~~~~~s~iiiTtr~~~ 136 (172)
++... ++++.+..... .+..|++|.++.+
T Consensus 84 E~Q~~~~~~~~~l~~l~~---~~~~Vi~~Gl~~~ 114 (184)
T 2orw_A 84 EVQFFNPSLFEVVKDLLD---RGIDVFCAGLDLT 114 (184)
T ss_dssp CGGGSCTTHHHHHHHHHH---TTCEEEEEEESBC
T ss_pred CcccCCHHHHHHHHHHHH---CCCCEEEEeeccc
Confidence 99643 33444333333 2677998887543
No 98
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.71 E-value=0.00037 Score=50.59 Aligned_cols=26 Identities=15% Similarity=0.144 Sum_probs=23.0
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
..+++|+|++|+|||||++.+.....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 36999999999999999999988753
No 99
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.70 E-value=5.2e-05 Score=58.28 Aligned_cols=55 Identities=15% Similarity=0.335 Sum_probs=35.9
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhcc--ccCc----------Ccc--cHHHHHHHhCCCeeEEEEecCC
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKITRR--FEEF----------PNI--GLNFQSKRLTRKKLLIVFDDVH 107 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~~~~--f~~~----------~~~--~~~~~~~~l~~~~~LlvlDdv~ 107 (172)
+++.|+|++|+|||+||.+++...... |-.. .+. ....+.+.+...+ ++|+|++.
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~-LLVIDsI~ 192 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR-VIVIDSLK 192 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS-EEEEECCT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC-EEEEeccc
Confidence 567899999999999999998762111 1111 111 2333445555555 99999996
No 100
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.68 E-value=3.9e-05 Score=55.08 Aligned_cols=40 Identities=15% Similarity=0.177 Sum_probs=29.0
Q ss_pred HHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 36 TEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 36 ~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
++.|.+.+...... ..+++|.|++|+|||||++.+...+.
T Consensus 8 ~~~~~~~~~~~~~~-g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 8 CQGVLERLDPRQPG-RQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHSCTTCCS-CEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCC-CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 44454544432222 57999999999999999999988754
No 101
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.65 E-value=0.00026 Score=50.93 Aligned_cols=86 Identities=16% Similarity=0.164 Sum_probs=49.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhc-cccCc---------------------------Cc-ccHHHHHHHhCCCeeEEEE
Q 040354 53 KLGISGSGDIGKITIAGAIFNKITR-RFEEF---------------------------PN-IGLNFQSKRLTRKKLLIVF 103 (172)
Q Consensus 53 ~i~I~G~~GiGKTtLa~~~~~~~~~-~f~~~---------------------------~~-~~~~~~~~~l~~~~~Llvl 103 (172)
+|.|.|+||+||+|.|+.++.++.- +.+.. ++ +....+...+..... +||
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~~~~~-~il 80 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPKHGN-VIF 80 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCCSSSC-EEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhccCCc-eEe
Confidence 6789999999999999999887321 11111 11 145566666665444 688
Q ss_pred ecCC-CHHhHHHHHhhccCCC--CCcEEEEEeCChhHHH
Q 040354 104 DDVH-HPRQIDCLIECLDWFA--SASRIIIISRDKQALI 139 (172)
Q Consensus 104 Ddv~-~~~~~~~l~~~~~~~~--~~s~iiiTtr~~~~~~ 139 (172)
|+.- +..|.+.|...+...+ ....|.+...++.+..
T Consensus 81 DGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~ 119 (206)
T 3sr0_A 81 DGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIE 119 (206)
T ss_dssp ESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHH
T ss_pred cCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHH
Confidence 9994 5666555544433222 2233444544444433
No 102
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.64 E-value=3.5e-05 Score=53.11 Aligned_cols=27 Identities=15% Similarity=0.101 Sum_probs=23.0
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhcc
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKITRR 78 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~~~~ 78 (172)
.+|.|.|++|+||||+|+.+.....-.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~ 28 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELKYP 28 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 478999999999999999998875433
No 103
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.64 E-value=0.00013 Score=56.98 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=20.7
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|++|+|||||++.+..-
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEEcCCCchHHHHHHHHhcC
Confidence 58999999999999999988753
No 104
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.64 E-value=0.00014 Score=54.19 Aligned_cols=23 Identities=26% Similarity=0.276 Sum_probs=20.8
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|+.|+|||||++.++.-
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999988764
No 105
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.62 E-value=8.4e-05 Score=56.81 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=20.8
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|+|+.|+|||||++.+..-
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTS
T ss_pred CEEEEECCCCchHHHHHHHHHcC
Confidence 58999999999999999988764
No 106
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.62 E-value=6.2e-05 Score=53.44 Aligned_cols=28 Identities=29% Similarity=0.442 Sum_probs=23.6
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhccc
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKITRRF 79 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~~~~f 79 (172)
+.|.|+||+|+|||||++.+..+....|
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 5688999999999999999988754443
No 107
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.61 E-value=0.00021 Score=52.17 Aligned_cols=81 Identities=16% Similarity=0.079 Sum_probs=48.1
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhcc------c--cC---c------------Ccc---cHHHHHHHhC----CC-ee
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKITRR------F--EE---F------------PNI---GLNFQSKRLT----RK-KL 99 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~------f--~~---~------------~~~---~~~~~~~~l~----~~-~~ 99 (172)
..++.++|++|+||||++..++.....+ | .. . ... ....+...+. +. .-
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~~d 91 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDETK 91 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTCC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCCCC
Confidence 4789999999999999998887763221 1 11 0 000 1122333332 23 45
Q ss_pred EEEEecCCC--HHhHHHHHhhccCCCCCcEEEEEeCC
Q 040354 100 LIVFDDVHH--PRQIDCLIECLDWFASASRIIIISRD 134 (172)
Q Consensus 100 LlvlDdv~~--~~~~~~l~~~~~~~~~~s~iiiTtr~ 134 (172)
++++|++.. .++++.+..... .+..||+|.++
T Consensus 92 vViIDEaQ~l~~~~ve~l~~L~~---~gi~Vil~Gl~ 125 (223)
T 2b8t_A 92 VIGIDEVQFFDDRICEVANILAE---NGFVVIISGLD 125 (223)
T ss_dssp EEEECSGGGSCTHHHHHHHHHHH---TTCEEEEECCS
T ss_pred EEEEecCccCcHHHHHHHHHHHh---CCCeEEEEecc
Confidence 999999963 345554433222 26779999984
No 108
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.58 E-value=4.6e-05 Score=52.93 Aligned_cols=22 Identities=23% Similarity=0.098 Sum_probs=20.6
Q ss_pred eEEEEEcCCCchHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFN 73 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~ 73 (172)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 109
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.57 E-value=3.8e-05 Score=52.90 Aligned_cols=22 Identities=23% Similarity=0.231 Sum_probs=19.8
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+|.|.|++|+||||+|+.+ ..
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~ 23 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KE 23 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HH
T ss_pred cEEEEECCCCCCHHHHHHHH-HH
Confidence 47899999999999999999 54
No 110
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.56 E-value=5.3e-05 Score=53.08 Aligned_cols=26 Identities=12% Similarity=0.212 Sum_probs=22.7
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
.+.|.|+|++|+||||+|+.+.....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 36889999999999999999987643
No 111
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.56 E-value=0.00019 Score=51.24 Aligned_cols=85 Identities=15% Similarity=0.121 Sum_probs=50.9
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH-Hhcc-------ccCc-------------C-------------------cc-----
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK-ITRR-------FEEF-------------P-------------------NI----- 85 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~-~~~~-------f~~~-------------~-------------------~~----- 85 (172)
...+.+++..|.||||.|-.+.-. .... |... . +.
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~ 107 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMA 107 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHH
Confidence 357778888889999999776655 2211 2221 0 00
Q ss_pred cHHHHHHHhCCCe-eEEEEecCC-----CHHhHHHHHhhccCCCCCcEEEEEeCCh
Q 040354 86 GLNFQSKRLTRKK-LLIVFDDVH-----HPRQIDCLIECLDWFASASRIIIISRDK 135 (172)
Q Consensus 86 ~~~~~~~~l~~~~-~LlvlDdv~-----~~~~~~~l~~~~~~~~~~s~iiiTtr~~ 135 (172)
.....++.+.+.+ =|||||++. ..-..+.++..+.......-||+|+|+.
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 2333445555544 499999993 2233444554444444566799999985
No 112
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.55 E-value=5.6e-05 Score=53.82 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=22.9
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
...+.|.|++|+||||+++.+...+.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 36899999999999999999988653
No 113
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.51 E-value=0.00015 Score=54.90 Aligned_cols=25 Identities=24% Similarity=0.210 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
..+++|.|++|+||||||+.+...+
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999999999887764
No 114
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.51 E-value=5.2e-05 Score=52.46 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=21.7
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
.+++|+|++|+||||+++.+....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998864
No 115
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.50 E-value=5.9e-05 Score=53.06 Aligned_cols=24 Identities=42% Similarity=0.279 Sum_probs=21.7
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
..+++|.|++|+|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 368999999999999999999875
No 116
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.49 E-value=6.9e-05 Score=52.57 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=22.0
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
.+++|+|++|+|||||++.+....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 689999999999999999998864
No 117
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.48 E-value=5.8e-05 Score=61.47 Aligned_cols=44 Identities=16% Similarity=-0.028 Sum_probs=36.6
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
..++|++..++.+...+... ..+.|+|++|+|||+||+.+++..
T Consensus 22 ~~ivGq~~~i~~l~~al~~~-----~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG-----ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT-----CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhhHHHHHHHHHHHHHHhcC-----CeeEeecCchHHHHHHHHHHHHHH
Confidence 44789999888887766543 478999999999999999999875
No 118
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=97.48 E-value=4.1e-05 Score=58.91 Aligned_cols=47 Identities=19% Similarity=0.119 Sum_probs=34.2
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
+.++|.+...+.+...+.... ...+.|+|++|+|||+||+.+++...
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~---~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPG---IGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGG---GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred hhccChHHHHHHHHHHhhCCC---CceEEEECCCCccHHHHHHHHHHhCc
Confidence 568898876655443333222 24599999999999999999999754
No 119
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.47 E-value=9.8e-05 Score=51.86 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
..+|.|.|++|+||||+++.+....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4789999999999999999998764
No 120
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.47 E-value=8e-05 Score=52.20 Aligned_cols=25 Identities=16% Similarity=0.150 Sum_probs=22.1
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
..|.|.|++|+||||+|+.+...+.
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999988754
No 121
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.45 E-value=6.2e-05 Score=53.60 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
..+|.|.|++|+||||+|+.+...+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998874
No 122
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.45 E-value=6.8e-05 Score=52.84 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=22.3
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
++++|.|++|+|||||++.+.....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5789999999999999999998754
No 123
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.43 E-value=8e-05 Score=51.80 Aligned_cols=25 Identities=24% Similarity=0.229 Sum_probs=21.8
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
..+.|.|++|+||||+|+.+.....
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999988643
No 124
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.43 E-value=0.00032 Score=54.69 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=21.0
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|++|+|||||++.++.-
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 58999999999999999998864
No 125
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.42 E-value=0.00011 Score=50.69 Aligned_cols=26 Identities=19% Similarity=0.153 Sum_probs=22.6
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
..+++|.|++|+||||+++.+...+.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 57999999999999999999988643
No 126
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.42 E-value=0.0001 Score=54.44 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=22.6
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
..+|+|.|++|+||||+|+.+...+
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999998863
No 127
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.42 E-value=0.00011 Score=52.34 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=23.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
..++.|.|++|+|||||++.+...+.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 47999999999999999999988753
No 128
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.42 E-value=9.1e-05 Score=51.88 Aligned_cols=25 Identities=12% Similarity=0.240 Sum_probs=22.4
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
.+|.|.|++|+||||+++.+.....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999988654
No 129
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.42 E-value=8.1e-05 Score=51.97 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
.+.|.|+|++|+||||+++.+....
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999998764
No 130
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.42 E-value=0.00012 Score=54.02 Aligned_cols=25 Identities=16% Similarity=-0.048 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
...|+|.|++|+||||+|+.+....
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999998753
No 131
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.42 E-value=8.6e-05 Score=52.73 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=21.8
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
.+++|.|++|+|||||++.+....
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 589999999999999999998863
No 132
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.42 E-value=0.0001 Score=54.70 Aligned_cols=24 Identities=25% Similarity=0.079 Sum_probs=21.6
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
.++.|.|++|+||||||+.++...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 478999999999999999998863
No 133
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.41 E-value=0.00011 Score=51.58 Aligned_cols=24 Identities=25% Similarity=0.155 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
..+|.|.|++|+||||+|+.+...
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998775
No 134
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.41 E-value=0.00038 Score=54.30 Aligned_cols=23 Identities=17% Similarity=0.099 Sum_probs=21.0
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|++|+|||||.+.++.-
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEEcCCCchHHHHHHHHHCC
Confidence 58999999999999999998864
No 135
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.41 E-value=0.00011 Score=50.90 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=21.8
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
..+++|.|++|+||||+++.+...
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 468999999999999999998875
No 136
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=97.41 E-value=0.0023 Score=50.03 Aligned_cols=48 Identities=21% Similarity=0.208 Sum_probs=34.7
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
..++|....+..+...+..-... ...+.|+|.+|+||+++|+.++...
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~-~~~vli~GesGtGKe~lAr~ih~~s 176 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKS-KAPVLITGESGTGKEIVARLIHRYS 176 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTS-CSCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHhhhhhhhcc-chhheEEeCCCchHHHHHHHHHHhc
Confidence 45788877777766655422111 2457799999999999999998863
No 137
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.40 E-value=8.8e-05 Score=53.00 Aligned_cols=25 Identities=24% Similarity=0.418 Sum_probs=22.7
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
..++.|+|++|+|||||++.+....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4789999999999999999998875
No 138
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.39 E-value=0.00011 Score=52.35 Aligned_cols=25 Identities=24% Similarity=0.310 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
..+++|.|++|+|||||++.+....
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 4699999999999999999998764
No 139
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.39 E-value=0.00044 Score=54.21 Aligned_cols=23 Identities=26% Similarity=0.143 Sum_probs=21.0
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|++|+|||||++.++.-
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCChHHHHHHHHHcC
Confidence 58999999999999999998864
No 140
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.39 E-value=0.0001 Score=51.86 Aligned_cols=64 Identities=6% Similarity=0.091 Sum_probs=37.8
Q ss_pred hCCCeeEEEEecCC-----CHHhHHHHHhhccCCCCCcEEEEEe---CChhHHHhc-CC--CceEEcCCCCHHHHHH
Q 040354 94 LTRKKLLIVFDDVH-----HPRQIDCLIECLDWFASASRIIIIS---RDKQALISC-GV--NKIYQMQELVHADALK 159 (172)
Q Consensus 94 l~~~~~LlvlDdv~-----~~~~~~~l~~~~~~~~~~s~iiiTt---r~~~~~~~~-~~--~~~~~l~~l~~~~~~~ 159 (172)
+..++-++++|++. +....+.+...+.. .+..+|+++ ++...+..+ .. ..++++...+.++..+
T Consensus 96 l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~--~~~~~i~~~H~~h~~~~~~~i~~r~~~~i~~~~~~~r~~~~~ 170 (178)
T 1ye8_A 96 KKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD--PNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPENRDVILE 170 (178)
T ss_dssp HHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC--TTSEEEEECCSSCCSHHHHHHHTCTTCEEEECCTTTTTTHHH
T ss_pred cccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc--CCCeEEEEEccCCCchHHHHHHhcCCcEEEEecCcCHHHHHH
Confidence 55677899999952 22334444444433 344466666 355555443 22 4688888888766544
No 141
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.38 E-value=0.0001 Score=51.59 Aligned_cols=24 Identities=25% Similarity=0.220 Sum_probs=21.4
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
++|.|.|++|+||||+|+.+...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998763
No 142
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.38 E-value=0.00011 Score=51.99 Aligned_cols=24 Identities=38% Similarity=0.484 Sum_probs=21.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 040354 53 KLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 53 ~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
.|+|.|++|+||||+++.+...+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998743
No 143
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.38 E-value=0.00038 Score=53.66 Aligned_cols=85 Identities=15% Similarity=0.141 Sum_probs=54.8
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhcc-----ccCc---------C--------cc-cHHHHHHHhCCCeeEEEEecCCC
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKITRR-----FEEF---------P--------NI-GLNFQSKRLTRKKLLIVFDDVHH 108 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~~~~-----f~~~---------~--------~~-~~~~~~~~l~~~~~LlvlDdv~~ 108 (172)
..++|+|+.|+|||||++.+...+... ++.. . .. ....+...+..++-+|++|++.+
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~~ 251 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELRS 251 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCCh
Confidence 589999999999999999998763211 1000 1 11 34566777777888999999987
Q ss_pred HHhHHHHHhhccCCCCCcEEEEEeCChhHHH
Q 040354 109 PRQIDCLIECLDWFASASRIIIISRDKQALI 139 (172)
Q Consensus 109 ~~~~~~l~~~~~~~~~~s~iiiTtr~~~~~~ 139 (172)
.+.++.+. .+.. .+.-+|+|++......
T Consensus 252 ~e~~~~l~-~~~~--g~~tvi~t~H~~~~~~ 279 (330)
T 2pt7_A 252 SEAYDFYN-VLCS--GHKGTLTTLHAGSSEE 279 (330)
T ss_dssp THHHHHHH-HHHT--TCCCEEEEEECSSHHH
T ss_pred HHHHHHHH-HHhc--CCCEEEEEEcccHHHH
Confidence 55555433 3321 1223778887665433
No 144
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.37 E-value=0.00012 Score=51.42 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=20.9
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|++|+|||||++.+...
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcc
Confidence 57899999999999999999864
No 145
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.37 E-value=0.00025 Score=55.71 Aligned_cols=23 Identities=22% Similarity=0.133 Sum_probs=21.1
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|++|+|||||++.++.-
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEEcCCCchHHHHHHHHHcC
Confidence 58999999999999999999874
No 146
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.37 E-value=0.00022 Score=53.90 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
..++.|.|++|+||||+|+.+....
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999998764
No 147
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.37 E-value=0.00054 Score=53.46 Aligned_cols=23 Identities=26% Similarity=0.196 Sum_probs=21.1
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|++|+|||||++.++.-
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCchHHHHHHHHhcC
Confidence 58999999999999999999864
No 148
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.37 E-value=0.00013 Score=51.36 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=21.8
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
...++|+|++|+||||+++.+...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999876
No 149
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.36 E-value=0.00015 Score=50.63 Aligned_cols=24 Identities=21% Similarity=0.059 Sum_probs=21.6
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
...+.|.|++|+||||+++.+...
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999875
No 150
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.36 E-value=0.00012 Score=51.47 Aligned_cols=25 Identities=24% Similarity=0.154 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
..+|.|.|++|+||||+|+.+....
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998764
No 151
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.36 E-value=0.00012 Score=52.58 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=23.1
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
..+++|+|++|+|||||++.+.....
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999988753
No 152
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.35 E-value=0.00023 Score=54.78 Aligned_cols=48 Identities=21% Similarity=0.241 Sum_probs=32.5
Q ss_pred cccccchHHHHHH-HhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 29 LVGIESRTEEIES-VLGVGSTMNICKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 29 ~~Gr~~~~~~l~~-~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
.+|....+..+.. ++.......+.+++|.|++|+|||||++.+.....
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3444455555544 44433233367999999999999999999877643
No 153
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.35 E-value=8e-05 Score=51.94 Aligned_cols=25 Identities=20% Similarity=0.277 Sum_probs=18.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
..+|.|.|++|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998763
No 154
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.34 E-value=0.00013 Score=51.87 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
..+++|.|++|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3689999999999999999998764
No 155
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.34 E-value=0.00039 Score=54.32 Aligned_cols=23 Identities=22% Similarity=0.177 Sum_probs=21.0
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|+.|+|||||.+.++.-
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCchHHHHHHHHhcC
Confidence 58999999999999999998864
No 156
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.34 E-value=0.00016 Score=51.52 Aligned_cols=26 Identities=19% Similarity=0.142 Sum_probs=23.0
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
...|.|.|++|+||||+|+.+...+.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 36899999999999999999998743
No 157
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.33 E-value=0.00025 Score=56.81 Aligned_cols=52 Identities=15% Similarity=0.226 Sum_probs=36.7
Q ss_pred CccccccchHHHHHHHhcC---------C--CCCCeeEEEEEcCCCchHHHHHHHHHHHHhcc
Q 040354 27 NHLVGIESRTEEIESVLGV---------G--STMNICKLGISGSGDIGKITIAGAIFNKITRR 78 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~---------~--~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 78 (172)
.+++|.+...+.+...+.. . .....+.+.++|++|+||||+|+.++......
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~ 77 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAP 77 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 5678888877777655421 0 00114679999999999999999999875443
No 158
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.33 E-value=0.00015 Score=51.89 Aligned_cols=26 Identities=31% Similarity=0.438 Sum_probs=23.1
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
..+++|.|+.|+|||||++.+...+.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999988654
No 159
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.32 E-value=0.00017 Score=51.23 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=21.8
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
..+|+|.|++|+||||+++.+...
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999998865
No 160
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.32 E-value=0.00013 Score=50.34 Aligned_cols=24 Identities=13% Similarity=0.198 Sum_probs=21.5
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
.+|.|.|++|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998864
No 161
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.32 E-value=0.00014 Score=51.37 Aligned_cols=25 Identities=24% Similarity=0.122 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
..+|+|.|++|+||||+|+.+....
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998764
No 162
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.31 E-value=0.00016 Score=50.56 Aligned_cols=25 Identities=20% Similarity=0.105 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
..+|+|.|++|+||||+|+.+....
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998763
No 163
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.30 E-value=0.00016 Score=52.25 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=21.5
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
.+++|.|++|+||||+++.+...+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998754
No 164
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.30 E-value=0.00017 Score=53.55 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=22.0
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
..+|.|.|++|+||||+|+.+...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 478999999999999999999886
No 165
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.30 E-value=0.00019 Score=49.36 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=20.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 040354 53 KLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 53 ~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
.|.|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998864
No 166
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.29 E-value=0.0002 Score=50.89 Aligned_cols=25 Identities=24% Similarity=0.194 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
...|.|.|++|+||||+|+.+....
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998764
No 167
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.29 E-value=0.00074 Score=51.43 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
..++.|+|++|+||||+++.++..+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999988764
No 168
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.28 E-value=0.0002 Score=52.07 Aligned_cols=25 Identities=20% Similarity=0.135 Sum_probs=23.0
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
.++|.|.|++|+||+|.|+.++.++
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999998873
No 169
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.28 E-value=0.00013 Score=52.01 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
.+.++|+|++|+|||||++.+....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3688999999999999999998864
No 170
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.28 E-value=0.00018 Score=51.39 Aligned_cols=25 Identities=16% Similarity=0.209 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
..+|.|.|++|+||||+++.+...+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998864
No 171
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.27 E-value=0.00028 Score=54.93 Aligned_cols=29 Identities=28% Similarity=0.332 Sum_probs=24.7
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhccc
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKITRRF 79 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f 79 (172)
...+.|+|++|+||||+++.++..+.-.|
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 56799999999999999999998755444
No 172
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.27 E-value=0.00017 Score=51.34 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=20.0
Q ss_pred eEEEEEcCCCchHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFN 73 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~ 73 (172)
.+++|.|++|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3689999999999999999876
No 173
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.26 E-value=0.00027 Score=52.25 Aligned_cols=26 Identities=19% Similarity=0.199 Sum_probs=23.1
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
..++.|.|++|+||||+|+.+.....
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999988743
No 174
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.26 E-value=0.00022 Score=49.98 Aligned_cols=26 Identities=23% Similarity=0.204 Sum_probs=23.1
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
..++.|.|++|+||||+++.+.....
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 47899999999999999999988743
No 175
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.25 E-value=0.00018 Score=52.88 Aligned_cols=24 Identities=25% Similarity=0.253 Sum_probs=21.7
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
..+++|.|++|+|||||++.++..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~ 50 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQN 50 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999999999855
No 176
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.25 E-value=0.00019 Score=50.34 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=21.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 040354 53 KLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 53 ~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
+|+|.|++|+||||+++.+...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998865
No 177
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.25 E-value=0.0002 Score=51.37 Aligned_cols=23 Identities=30% Similarity=0.286 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 040354 53 KLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 53 ~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
.|+|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999997764
No 178
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.24 E-value=0.005 Score=47.25 Aligned_cols=114 Identities=10% Similarity=0.029 Sum_probs=74.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHh-ccccC---c-----Ccc--cHHHHHH-HhCCCeeEEEEecCCC---HHhHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKIT-RRFEE---F-----PNI--GLNFQSK-RLTRKKLLIVFDDVHH---PRQIDCL 115 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~-~~f~~---~-----~~~--~~~~~~~-~l~~~~~LlvlDdv~~---~~~~~~l 115 (172)
.+++.++|+.|.||++.+..+...+. ..|.. . .++ +.+.+.. -+-+++-++|+|+++. ...++.+
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~~~~~~aL 97 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQL 97 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCTTCCHHHHHHHHHHHHHCCSCEEEEEECCSSCCCTTHHHHH
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecCCCCHHHHHHHhcCcCCccCCeEEEEECCCCCCChHHHHHH
Confidence 57999999999999999999988742 22221 0 122 2222222 2345677889999865 3567778
Q ss_pred HhhccCCCCCcEEEEEeCC-------hhHHHhc-CCCceEEcCCCCHHHHHHHHhhh
Q 040354 116 IECLDWFASASRIIIISRD-------KQALISC-GVNKIYQMQELVHADALKLFSEC 164 (172)
Q Consensus 116 ~~~~~~~~~~s~iiiTtr~-------~~~~~~~-~~~~~~~l~~l~~~~~~~lf~~~ 164 (172)
...+....+++.+|+++.. ..+...+ .....++..+++.++...++.+.
T Consensus 98 l~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~ 154 (343)
T 1jr3_D 98 LTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAAR 154 (343)
T ss_dssp HHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHH
T ss_pred HHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHH
Confidence 7777655567777766643 2344443 34568899999988887666544
No 179
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.24 E-value=0.00023 Score=50.37 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=22.0
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
..+|+|.|++|+||||+++.+...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 578999999999999999998875
No 180
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.24 E-value=0.0002 Score=51.10 Aligned_cols=25 Identities=16% Similarity=0.062 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
..+|+|.|++|+||||+++.+...+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998863
No 181
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.23 E-value=0.00021 Score=51.50 Aligned_cols=25 Identities=20% Similarity=0.218 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
...|.|.|++|+||||+|+.+...+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998764
No 182
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.22 E-value=0.00022 Score=51.20 Aligned_cols=22 Identities=32% Similarity=0.279 Sum_probs=19.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 040354 53 KLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 53 ~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.|+|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999775
No 183
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.22 E-value=0.001 Score=52.79 Aligned_cols=56 Identities=14% Similarity=0.041 Sum_probs=35.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhccccCcCcc-----cHHHHHHHhCCCeeEEEEecCC
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKITRRFEEFPNI-----GLNFQSKRLTRKKLLIVFDDVH 107 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~-----~~~~~~~~l~~~~~LlvlDdv~ 107 (172)
..+|.|+|++|+||||+|+.+.....-.+-..+.+ ....+...+..+. -+|+|...
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~~~~~~~~~~~~l~~g~-~vIiD~~~ 318 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGSWQRCVSSCQAALRQGK-RVVIDNTN 318 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGSCSHHHHHHHHHHHHHTTC-CEEEESCC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchHHHHHHHHHHHHHHHhcCC-cEEEeCCC
Confidence 57899999999999999999887642222111222 3333444444433 35688774
No 184
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.22 E-value=0.00023 Score=50.92 Aligned_cols=26 Identities=19% Similarity=0.335 Sum_probs=23.1
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
.+++.|+|++|+|||||++.+.....
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 47899999999999999999998754
No 185
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.21 E-value=0.00022 Score=51.09 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
..+++|.|++|+|||||++.+....
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3699999999999999999998864
No 186
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.21 E-value=0.0017 Score=53.72 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=20.9
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
..++|+|+.|+|||||++.+..-
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999998764
No 187
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.20 E-value=0.00022 Score=51.74 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=21.7
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
...|.|.|++|+||||+|+.+...
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999875
No 188
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.20 E-value=0.00023 Score=50.72 Aligned_cols=22 Identities=32% Similarity=0.443 Sum_probs=20.1
Q ss_pred eEEEEEcCCCchHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFN 73 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~ 73 (172)
.+++|.|++|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999875
No 189
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.18 E-value=0.00021 Score=51.63 Aligned_cols=26 Identities=35% Similarity=0.203 Sum_probs=22.8
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
...|.|.|++|+||||+++.+...+.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46799999999999999999988743
No 190
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.17 E-value=0.00024 Score=52.20 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
..+++|.|+.|+|||||++.+...+
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999988753
No 191
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.17 E-value=0.00027 Score=50.43 Aligned_cols=24 Identities=33% Similarity=0.475 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
..+++|+|++|+||||+++.+...
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 578999999999999999999875
No 192
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.16 E-value=0.00028 Score=49.65 Aligned_cols=23 Identities=17% Similarity=0.151 Sum_probs=21.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 040354 53 KLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 53 ~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
.|+|.|+.|+||||+++.+...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998875
No 193
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.16 E-value=0.00073 Score=53.28 Aligned_cols=24 Identities=21% Similarity=0.126 Sum_probs=21.8
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
..+.|+|++|+|||||++.+.+.+
T Consensus 175 Qr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 175 QRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cEEEEecCCCCChhHHHHHHHHHH
Confidence 589999999999999999988864
No 194
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.16 E-value=0.00021 Score=51.78 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=21.9
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
.+++|+|++|+|||||++.+....
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 689999999999999999998864
No 195
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.16 E-value=0.00058 Score=56.75 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=20.8
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
..++|+|+.|+|||||++.+..-
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 68999999999999999988764
No 196
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.16 E-value=0.0011 Score=54.48 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=20.9
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|+.|+|||||++.++..
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998864
No 197
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.15 E-value=0.00049 Score=52.46 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=23.0
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
..+++|.|+.|+|||||++.+...+.
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 57999999999999999999888643
No 198
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.15 E-value=0.0013 Score=53.94 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=21.2
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|+.|+|||||++.++..
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999875
No 199
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.14 E-value=0.00035 Score=58.07 Aligned_cols=44 Identities=18% Similarity=0.277 Sum_probs=36.7
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
+.++|.+..++.+...+... ..+.|+|++|+||||||+.++..+
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g-----~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK-----RHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT-----CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred ceEECchhhHhhccccccCC-----CEEEEEeCCCCCHHHHHHHHhccC
Confidence 45789888888877777643 488999999999999999999874
No 200
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.14 E-value=0.00033 Score=48.31 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=22.9
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
-.+++|.|+.|+|||||++.++..+
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3699999999999999999999875
No 201
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.13 E-value=0.0013 Score=54.10 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
-.+++|.|+.|+|||||++.+...
T Consensus 25 Gei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 25 NTILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 379999999999999999987753
No 202
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.13 E-value=0.0013 Score=51.21 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=22.6
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
..++.|+|+.|+||||++..++..+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhc
Confidence 5799999999999999999988764
No 203
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.13 E-value=0.00028 Score=50.00 Aligned_cols=25 Identities=24% Similarity=0.202 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
...|+|.|++|+||||+++.+...+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999998865
No 204
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.12 E-value=0.0018 Score=53.87 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=21.2
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|+.|+|||||++.++..
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999875
No 205
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.12 E-value=0.00045 Score=49.72 Aligned_cols=25 Identities=12% Similarity=0.324 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
...+.|+|.+|+|||||+..++...
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 5788999999999999999998873
No 206
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.12 E-value=0.00033 Score=49.86 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=22.0
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
..+|+|+|+.|+||||+++.+...
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 589999999999999999998775
No 207
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.11 E-value=0.00098 Score=51.18 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=22.9
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
..++.|+|++|+||||++..++..+.
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~ 130 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYA 130 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 67999999999999999999887643
No 208
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.11 E-value=0.0009 Score=55.49 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=20.5
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
..++|+|+.|+|||||++.+...
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999987754
No 209
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.11 E-value=0.00033 Score=53.65 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=23.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
..+++|.|++|+|||||++.+...+.
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCchHHHHHHHHHhhcc
Confidence 57999999999999999999988643
No 210
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.11 E-value=0.00016 Score=51.63 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=21.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 040354 53 KLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 53 ~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
+|.|.|++|+||||+++.+...+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999988753
No 211
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.10 E-value=0.00035 Score=48.73 Aligned_cols=26 Identities=15% Similarity=0.143 Sum_probs=23.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
.+++.|.|..|+|||||+..+...+.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhH
Confidence 57899999999999999999988754
No 212
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.09 E-value=0.00034 Score=50.34 Aligned_cols=24 Identities=17% Similarity=0.073 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
-.++.|.|++|+|||||++.++..
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 379999999999999999999874
No 213
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.09 E-value=0.0003 Score=51.31 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=20.3
Q ss_pred eEEEEEcCCCchHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFN 73 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~ 73 (172)
.+++|.|++|+|||||++.++.
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 6999999999999999998883
No 214
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.08 E-value=0.00043 Score=48.16 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
..++.|.|+.|+||||+++.+...+
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998864
No 215
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=97.08 E-value=0.0072 Score=47.46 Aligned_cols=47 Identities=23% Similarity=0.250 Sum_probs=34.4
Q ss_pred CccccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHH
Q 040354 27 NHLVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 27 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
..++|....+..+.+.+..-... ...+.|+|.+|+|||++|+.++..
T Consensus 137 ~~~ig~s~~m~~l~~~i~~~a~~-~~~vli~Ge~GtGK~~lAr~ih~~ 183 (387)
T 1ny5_A 137 EEYVFESPKMKEILEKIKKISCA-ECPVLITGESGVGKEVVARLIHKL 183 (387)
T ss_dssp CCCCCCSHHHHHHHHHHHHHTTC-CSCEEEECSTTSSHHHHHHHHHHH
T ss_pred hhhhhccHHhhHHHHHHHHhcCC-CCCeEEecCCCcCHHHHHHHHHHh
Confidence 35778777777777666532222 235599999999999999999876
No 216
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.07 E-value=0.00037 Score=51.54 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=21.7
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
..+++|.|++|+||||+++.+...
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~ 50 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAES 50 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 369999999999999999999855
No 217
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.06 E-value=0.00037 Score=49.97 Aligned_cols=41 Identities=17% Similarity=0.189 Sum_probs=29.6
Q ss_pred ccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 32 IESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 32 r~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
.++..+.+...+.... .+.+.|+|.+|+|||||+..+....
T Consensus 14 ~~~~~~~~~~~~~~~~---~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 14 NKRLAEKNREALRESG---TVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHHHHHHHHHHHHHHT---CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhcccC---ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3344455555443222 5899999999999999999998764
No 218
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.05 E-value=0.00052 Score=49.05 Aligned_cols=23 Identities=22% Similarity=-0.045 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCchHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFN 73 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~ 73 (172)
..++.|+|++|+|||||+..++.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999876
No 219
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.04 E-value=0.00049 Score=49.33 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=22.8
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
..++.|.|++|+||||+++.+...+.
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 47899999999999999999987643
No 220
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.04 E-value=0.00049 Score=48.78 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=22.1
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
++++|.|++|+||||+++.+...+.
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3899999999999999999988643
No 221
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.04 E-value=0.00045 Score=50.30 Aligned_cols=25 Identities=20% Similarity=0.116 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
...|.|.|++|+||||+|+.+...+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4679999999999999999998874
No 222
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=97.03 E-value=0.0022 Score=55.95 Aligned_cols=89 Identities=13% Similarity=-0.010 Sum_probs=52.0
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH-H---hccccCc------------------Ccc---------cHHHHHHHh--CCC
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK-I---TRRFEEF------------------PNI---------GLNFQSKRL--TRK 97 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~-~---~~~f~~~------------------~~~---------~~~~~~~~l--~~~ 97 (172)
..+++|+|+.|.||||+++.+.-- + ...|-.. +++ ....+...+ ..+
T Consensus 662 g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~~~~d~i~~~ig~~d~l~~~lStf~~e~~~~a~il~~a~~ 741 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATK 741 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEEECCSEEEEECC---------CHHHHHHHHHHHHHHHCCT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHhcCchhhHHHhHhhhHHHHHHHHHHHHhccC
Confidence 468999999999999999988322 1 1111110 111 122223333 467
Q ss_pred eeEEEEecCC---CHHhH----HHHHhhccCCCCCcEEEEEeCChhHHHh
Q 040354 98 KLLIVFDDVH---HPRQI----DCLIECLDWFASASRIIIISRDKQALIS 140 (172)
Q Consensus 98 ~~LlvlDdv~---~~~~~----~~l~~~~~~~~~~s~iiiTtr~~~~~~~ 140 (172)
+-|++||+.. +...- ..+...+.. ..|+.+|++|++..+...
T Consensus 742 ~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~-~~g~~vl~aTH~~el~~l 790 (934)
T 3thx_A 742 DSLIIIDELGRGTSTYDGFGLAWAISEYIAT-KIGAFCMFATHFHELTAL 790 (934)
T ss_dssp TCEEEEESCSCSSCHHHHHHHHHHHHHHHHH-TTCCEEEEEESCGGGGGG
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCCEEEEEcCcHHHHHH
Confidence 7899999994 33221 222333321 247889999999776543
No 223
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=97.03 E-value=0.00057 Score=56.54 Aligned_cols=23 Identities=22% Similarity=0.140 Sum_probs=20.4
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
..++|+|+.|+|||||++.+...
T Consensus 368 ~~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 368 ETVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp CEEEEECSTTSSHHHHHTTTTTS
T ss_pred CEEEEECCCCChHHHHHHHHhcC
Confidence 58999999999999999887654
No 224
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.03 E-value=0.00037 Score=51.69 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=21.7
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
..+.|.|++|+||||+++.+...+
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhc
Confidence 589999999999999999998853
No 225
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.02 E-value=0.00043 Score=49.69 Aligned_cols=23 Identities=30% Similarity=0.264 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 040354 53 KLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 53 ~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
.|.|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998763
No 226
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.02 E-value=0.00048 Score=49.51 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCchHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFN 73 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~ 73 (172)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999875
No 227
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.02 E-value=0.0021 Score=53.55 Aligned_cols=23 Identities=22% Similarity=0.224 Sum_probs=20.8
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|+.|+|||||++.++.-
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl 401 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGA 401 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCcHHHHHHHHhcC
Confidence 47899999999999999999864
No 228
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.00 E-value=0.00025 Score=51.59 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=16.0
Q ss_pred eEEEEEcCCCchHHHHHHHHH-HHH
Q 040354 52 CKLGISGSGDIGKITIAGAIF-NKI 75 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~-~~~ 75 (172)
.+++|+|+.|+|||||++.+. ...
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 689999999999999999998 543
No 229
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.00 E-value=0.00047 Score=49.97 Aligned_cols=23 Identities=26% Similarity=0.237 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 040354 53 KLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 53 ~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
.|.|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998763
No 230
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.00 E-value=0.00095 Score=51.42 Aligned_cols=25 Identities=20% Similarity=0.149 Sum_probs=22.7
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
..++.|+|++|+||||++..++..+
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5899999999999999999988763
No 231
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.99 E-value=0.00046 Score=48.97 Aligned_cols=23 Identities=17% Similarity=0.297 Sum_probs=21.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 040354 53 KLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 53 ~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
+++|+|+.|+|||||++.++..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 68999999999999999998875
No 232
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.99 E-value=0.00048 Score=49.62 Aligned_cols=24 Identities=25% Similarity=0.137 Sum_probs=21.5
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
..|.|.|++|+||||+|+.+...+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999998864
No 233
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.98 E-value=0.0041 Score=51.81 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=20.7
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|+.|+|||||++.+...
T Consensus 104 ei~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 104 QVLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCChHHHHHHHHhcC
Confidence 69999999999999999988753
No 234
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.98 E-value=0.003 Score=52.29 Aligned_cols=80 Identities=16% Similarity=0.193 Sum_probs=48.0
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhcc-ccCc---Ccc-cHHHH-----------HHHhC----------C---CeeEEE
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKITRR-FEEF---PNI-GLNFQ-----------SKRLT----------R---KKLLIV 102 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~~~~-f~~~---~~~-~~~~~-----------~~~l~----------~---~~~Llv 102 (172)
+++.|.|++|+||||++..+....... .... .+- ....+ .+.+. . ..-+||
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~dvlI 284 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLLI 284 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSCSEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccCCEEE
Confidence 689999999999999999988874332 1111 100 11111 12221 0 124899
Q ss_pred EecCC--CHHhHHHHHhhccCCCCCcEEEEEeCC
Q 040354 103 FDDVH--HPRQIDCLIECLDWFASASRIIIISRD 134 (172)
Q Consensus 103 lDdv~--~~~~~~~l~~~~~~~~~~s~iiiTtr~ 134 (172)
+|++. +...+..+...++ .+.++|+..-.
T Consensus 285 IDEasml~~~~~~~Ll~~~~---~~~~lilvGD~ 315 (574)
T 3e1s_A 285 VDEVSMMGDALMLSLLAAVP---PGARVLLVGDT 315 (574)
T ss_dssp ECCGGGCCHHHHHHHHTTSC---TTCEEEEEECT
T ss_pred EcCccCCCHHHHHHHHHhCc---CCCEEEEEecc
Confidence 99995 4556666665443 56777776543
No 235
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.97 E-value=0.0005 Score=51.83 Aligned_cols=23 Identities=26% Similarity=0.140 Sum_probs=21.0
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 58899999999999999999874
No 236
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=96.97 E-value=0.0005 Score=52.67 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
.++|.|+|.||+||||.+..+...+
T Consensus 48 aKVIAIaGKGGVGKTTtavNLA~aL 72 (314)
T 3fwy_A 48 AKVFAVYGKGGIGKSTTSSNLSAAF 72 (314)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCccCHHHHHHHHHHHH
Confidence 7999999999999999988777663
No 237
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.96 E-value=0.00048 Score=49.99 Aligned_cols=23 Identities=17% Similarity=0.112 Sum_probs=21.5
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.++.|+|++|+|||||+..++..
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 69999999999999999999885
No 238
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.95 E-value=0.0036 Score=44.41 Aligned_cols=82 Identities=15% Similarity=0.013 Sum_probs=48.7
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhcc-ccCc------------------Cc--c------cHHHHHHHhCCCeeEEEE
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKITRR-FEEF------------------PN--I------GLNFQSKRLTRKKLLIVF 103 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~-f~~~------------------~~--~------~~~~~~~~l~~~~~Llvl 103 (172)
..+..++|+.|+||||.+...+.....+ .... .. . ....+.+.+.+.--+|++
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~~~~~dvViI 87 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYFEEDTEVIAI 87 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHCCTTCSEEEE
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHHHhccCCEEEE
Confidence 4789999999999999988777763221 1111 00 0 112333344333348999
Q ss_pred ecCC--CHHhHHHHHhhccCCCCCcEEEEEeCCh
Q 040354 104 DDVH--HPRQIDCLIECLDWFASASRIIIISRDK 135 (172)
Q Consensus 104 Ddv~--~~~~~~~l~~~~~~~~~~s~iiiTtr~~ 135 (172)
|++. +.++++.+....+ .+..||++.++.
T Consensus 88 DEaqfl~~~~v~~l~~l~~---~~~~Vi~~Gl~~ 118 (191)
T 1xx6_A 88 DEVQFFDDEIVEIVNKIAE---SGRRVICAGLDM 118 (191)
T ss_dssp CSGGGSCTHHHHHHHHHHH---TTCEEEEEECSB
T ss_pred ECCCCCCHHHHHHHHHHHh---CCCEEEEEeccc
Confidence 9984 3445554443222 366899999854
No 239
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.94 E-value=0.00056 Score=49.16 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=21.1
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.++.|.|++|+|||||+..++..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 68999999999999999998865
No 240
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.94 E-value=0.00038 Score=48.61 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=22.4
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
.++.|+|++|+|||||++.+...+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 5799999999999999999988754
No 241
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.93 E-value=0.00055 Score=51.51 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCchHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFN 73 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~ 73 (172)
..+|+|.|++|+||||+|+.+..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999873
No 242
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.92 E-value=0.00042 Score=50.82 Aligned_cols=23 Identities=26% Similarity=0.154 Sum_probs=20.6
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|+.|+|||||++.+..-
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 58999999999999999988753
No 243
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.92 E-value=0.0026 Score=51.23 Aligned_cols=25 Identities=24% Similarity=0.559 Sum_probs=21.8
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
..+.|+|++|+|||||+..+.....
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhh
Confidence 4689999999999999999887744
No 244
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.91 E-value=0.00066 Score=52.55 Aligned_cols=24 Identities=21% Similarity=0.248 Sum_probs=22.1
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
.+|+|.|++|+||||||..++...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 589999999999999999999874
No 245
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.91 E-value=0.00055 Score=50.41 Aligned_cols=23 Identities=17% Similarity=0.026 Sum_probs=20.9
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|+.|+|||||++.++.-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999998864
No 246
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.91 E-value=0.00069 Score=49.71 Aligned_cols=26 Identities=12% Similarity=0.299 Sum_probs=22.7
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
..++.|.|++|+||||+++.+...+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999987643
No 247
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=96.90 E-value=0.0017 Score=51.21 Aligned_cols=37 Identities=22% Similarity=0.117 Sum_probs=26.9
Q ss_pred HHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 38 EIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 38 ~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
++++.+..-... ..++|.|.+|+|||+|+..+.+.+.
T Consensus 164 raID~l~PigrG--QR~lIfg~~g~GKT~Ll~~Ia~~i~ 200 (427)
T 3l0o_A 164 RLIDLFAPIGKG--QRGMIVAPPKAGKTTILKEIANGIA 200 (427)
T ss_dssp HHHHHHSCCBTT--CEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred hhhhhcccccCC--ceEEEecCCCCChhHHHHHHHHHHh
Confidence 344555432222 5889999999999999999988743
No 248
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=96.90 E-value=0.0048 Score=52.70 Aligned_cols=86 Identities=15% Similarity=0.123 Sum_probs=52.5
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH--h--ccccCc------------------Ccc---c------HHHHHHHh--CCCe
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKI--T--RRFEEF------------------PNI---G------LNFQSKRL--TRKK 98 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~--~--~~f~~~------------------~~~---~------~~~~~~~l--~~~~ 98 (172)
.+++|+|+.|+|||||++.+..-. . ..|-.. +++ . ...+...+ ..++
T Consensus 577 ~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa~~~~i~~v~~i~~~~~~~d~l~~g~S~~~~e~~~la~il~~a~~p 656 (765)
T 1ewq_A 577 ELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGIYTRIGASDDLAGGKSTFMVEMEEVALILKEATEN 656 (765)
T ss_dssp CEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSEEEEECCC------CCSHHHHHHHHHHHHHHHCCTT
T ss_pred cEEEEECCCCCChHHHHHHHHhhhhhcccCceeehhccceeeHHHhhccCCHHHHHHhcccHHHHHHHHHHHHHHhccCC
Confidence 589999999999999999987642 1 111110 222 1 11233344 5678
Q ss_pred eEEEEecC---CCHHh---H-HHHHhhccCCCCCcEEEEEeCChhHHH
Q 040354 99 LLIVFDDV---HHPRQ---I-DCLIECLDWFASASRIIIISRDKQALI 139 (172)
Q Consensus 99 ~LlvlDdv---~~~~~---~-~~l~~~~~~~~~~s~iiiTtr~~~~~~ 139 (172)
-|+++|+. .+.-+ . ..+...+.. .|+.+|++|++..+..
T Consensus 657 ~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~ 702 (765)
T 1ewq_A 657 SLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELTA 702 (765)
T ss_dssp EEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHHT
T ss_pred CEEEEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHH
Confidence 99999999 43221 1 223333333 5778999999977654
No 249
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.89 E-value=0.00069 Score=52.09 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=22.0
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
.++.|+|++|+||||||..++...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 589999999999999999999873
No 250
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.89 E-value=0.005 Score=53.59 Aligned_cols=88 Identities=14% Similarity=0.100 Sum_probs=50.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH-H---hccccCc------------------Ccc---------cHHHHHHHh--CCC
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK-I---TRRFEEF------------------PNI---------GLNFQSKRL--TRK 97 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~-~---~~~f~~~------------------~~~---------~~~~~~~~l--~~~ 97 (172)
..+++|.|+.|.||||+.+.+..- + ...|-.. +++ ....+...+ ...
T Consensus 673 g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~a~~ 752 (918)
T 3thx_B 673 ERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKATS 752 (918)
T ss_dssp CCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC----------CCHHHHHHHHHHHHHHCCT
T ss_pred CeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHhccC
Confidence 468999999999999999987643 1 1111110 111 011111222 457
Q ss_pred eeEEEEecCC---CHHhH----HHHHhhccCCCCCcEEEEEeCChhHHH
Q 040354 98 KLLIVFDDVH---HPRQI----DCLIECLDWFASASRIIIISRDKQALI 139 (172)
Q Consensus 98 ~~LlvlDdv~---~~~~~----~~l~~~~~~~~~~s~iiiTtr~~~~~~ 139 (172)
+-|++||+.. +...- ..+...+.. ..|+.+|++|++..++.
T Consensus 753 p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~-~~g~tvl~vTH~~el~~ 800 (918)
T 3thx_B 753 QSLVILDELGRGTSTHDGIAIAYATLEYFIR-DVKSLTLFVTHYPPVCE 800 (918)
T ss_dssp TCEEEEESTTTTSCHHHHHHHHHHHHHHHHH-TTCCEEEEECSCGGGGG
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHH-hcCCeEEEEeCcHHHHH
Confidence 7899999995 32221 123333321 24788999999976654
No 251
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.88 E-value=0.0016 Score=49.61 Aligned_cols=42 Identities=19% Similarity=0.207 Sum_probs=29.5
Q ss_pred hHHHHHHHhcCCC-----CCCeeEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 35 RTEEIESVLGVGS-----TMNICKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 35 ~~~~l~~~l~~~~-----~~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
-.+.|.+.+.... .....++.|+|++|+||||++..++..+.
T Consensus 83 ~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~ 129 (306)
T 1vma_A 83 LKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV 129 (306)
T ss_dssp HHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHH
Confidence 3445555554321 12257999999999999999999887743
No 252
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.88 E-value=0.00046 Score=50.24 Aligned_cols=23 Identities=22% Similarity=0.065 Sum_probs=20.4
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|+.|+|||||++.++.-
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999987753
No 253
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.88 E-value=0.0028 Score=51.48 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
..+++|+|++|+|||||++.++..+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHh
Confidence 4799999999999999999988764
No 254
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.88 E-value=0.00071 Score=47.37 Aligned_cols=26 Identities=19% Similarity=0.246 Sum_probs=22.9
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
.+++.|.|++|+|||||+..+...+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 47899999999999999999988743
No 255
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.87 E-value=0.00075 Score=51.44 Aligned_cols=25 Identities=16% Similarity=0.080 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
..++.|+|++|+||||++..++..+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 5799999999999999999988763
No 256
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.87 E-value=0.0018 Score=49.41 Aligned_cols=25 Identities=16% Similarity=0.069 Sum_probs=22.0
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
..++.|.|.+|+||||||..++...
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3699999999999999999988763
No 257
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.87 E-value=0.00076 Score=47.10 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
...+.++|.+|+|||||+..+...
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468899999999999999998875
No 258
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.85 E-value=0.00046 Score=49.74 Aligned_cols=23 Identities=22% Similarity=-0.005 Sum_probs=20.9
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|+.|+|||||++.++..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999998864
No 259
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.83 E-value=0.0014 Score=50.90 Aligned_cols=25 Identities=28% Similarity=0.415 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
..+++|+|.+|+|||||+..+....
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999988764
No 260
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.82 E-value=0.00058 Score=50.16 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=21.2
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|+|+.|+|||||++.++.-
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999998875
No 261
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.80 E-value=0.00074 Score=49.95 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=20.7
Q ss_pred eEEEEEcCCCchHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFN 73 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~ 73 (172)
.+++|.|+.|+|||||++.++.
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999987
No 262
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.79 E-value=0.00061 Score=50.82 Aligned_cols=23 Identities=30% Similarity=0.198 Sum_probs=20.6
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|+.|+|||||++.++.-
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999988753
No 263
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.79 E-value=0.00061 Score=51.23 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=20.1
Q ss_pred eEEEEEcCCCchHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFN 73 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~ 73 (172)
.+++|.|+.|+|||||++.+..
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 5899999999999999998775
No 264
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.79 E-value=0.00084 Score=47.18 Aligned_cols=24 Identities=17% Similarity=0.351 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.-.++|.|++|+|||||++.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 467899999999999999999875
No 265
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.78 E-value=0.00063 Score=50.54 Aligned_cols=23 Identities=26% Similarity=0.135 Sum_probs=20.5
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|+.|+|||||++.++.-
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999987653
No 266
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.78 E-value=0.00078 Score=50.35 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=21.0
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|+.|+|||||++.++.-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998873
No 267
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.78 E-value=0.00097 Score=50.96 Aligned_cols=25 Identities=16% Similarity=0.117 Sum_probs=22.6
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
..++.|.|+.|+||||||..++...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4789999999999999999999873
No 268
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.77 E-value=0.00066 Score=49.93 Aligned_cols=23 Identities=26% Similarity=0.252 Sum_probs=20.7
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|+.|+|||||++.++.-
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999988754
No 269
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.75 E-value=0.00067 Score=50.73 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=20.7
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|+.|+|||||++.+..-
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 58999999999999999988753
No 270
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=96.75 E-value=0.0029 Score=45.70 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=19.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 040354 53 KLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 53 ~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
-|.|.|.+|+|||+|+.++.+.
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 4788999999999999998764
No 271
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.75 E-value=0.00058 Score=49.42 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=20.8
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|+.|+|||||++.++.-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999998764
No 272
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.75 E-value=0.0043 Score=49.60 Aligned_cols=41 Identities=17% Similarity=0.218 Sum_probs=29.3
Q ss_pred HHHHHHHhcCCC------CCCeeEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 36 TEEIESVLGVGS------TMNICKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 36 ~~~l~~~l~~~~------~~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
.+.+.+++.... ...++++.++|.+|+||||++..++..+.
T Consensus 79 ~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~ 125 (433)
T 2xxa_A 79 RNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLR 125 (433)
T ss_dssp HHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 445566665321 12267999999999999999999887743
No 273
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.75 E-value=0.00075 Score=49.68 Aligned_cols=23 Identities=22% Similarity=0.200 Sum_probs=21.1
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|+.|+|||||++.++.-
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999998864
No 274
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.75 E-value=0.00088 Score=47.24 Aligned_cols=24 Identities=17% Similarity=0.351 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.-.++|.|++|+|||||++.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356899999999999999999875
No 275
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=96.75 E-value=0.0032 Score=54.05 Aligned_cols=88 Identities=13% Similarity=0.030 Sum_probs=50.8
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH-H-h--ccccCc------------------Ccc------c---HHHHHHHh--CCC
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK-I-T--RRFEEF------------------PNI------G---LNFQSKRL--TRK 97 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~-~-~--~~f~~~------------------~~~------~---~~~~~~~l--~~~ 97 (172)
..+++|+|+.|.||||+.+.+..- + . ..|-.. +++ . ...+...+ ..+
T Consensus 607 g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~vpa~~~~i~~~~~i~~~~~~~d~l~~~~stf~~e~~~~~~il~~a~~ 686 (800)
T 1wb9_A 607 RRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATE 686 (800)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCCEEEEEEC-----------CHHHHHHHHHHHHHCCT
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHHHhcCcccchhcccceeHHHHHhhCCHHHHHHhhhhhhhHHHHHHHHHHHhccC
Confidence 469999999999999999998765 1 1 111100 111 0 11122222 457
Q ss_pred eeEEEEecC---CCH-H--h-HHHHHhhccCCCCCcEEEEEeCChhHHH
Q 040354 98 KLLIVFDDV---HHP-R--Q-IDCLIECLDWFASASRIIIISRDKQALI 139 (172)
Q Consensus 98 ~~LlvlDdv---~~~-~--~-~~~l~~~~~~~~~~s~iiiTtr~~~~~~ 139 (172)
+-|+++|+. .+. + . ...+...+.. ..|+.+|++|++..+..
T Consensus 687 psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~-~~g~~vl~~TH~~el~~ 734 (800)
T 1wb9_A 687 YSLVLMDEIGRGTSTYDGLSLAWACAENLAN-KIKALTLFATHYFELTQ 734 (800)
T ss_dssp TEEEEEESCCCCSSSSHHHHHHHHHHHHHHH-TTCCEEEEECSCGGGGG
T ss_pred CCEEEEECCCCCCChhHHHHHHHHHHHHHHh-ccCCeEEEEeCCHHHHH
Confidence 889999999 232 1 1 1223333321 13778999999876543
No 276
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.75 E-value=0.00091 Score=51.03 Aligned_cols=24 Identities=17% Similarity=0.318 Sum_probs=22.3
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
.+++|+|++|+|||||++.+..-+
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhhc
Confidence 699999999999999999999876
No 277
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.75 E-value=0.0013 Score=51.56 Aligned_cols=56 Identities=27% Similarity=0.286 Sum_probs=34.7
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhccccCcC-c-ccHHHHHHHhCCCeeEEEEecCC
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKITRRFEEFP-N-IGLNFQSKRLTRKKLLIVFDDVH 107 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~-~-~~~~~~~~~l~~~~~LlvlDdv~ 107 (172)
...++|+|++|+|||||++.+.......+-... . -........+ -.++.+++||+.
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~~~~~~lg~~-~q~~~~l~dd~~ 226 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELGVA-IDQFLVVFEDVK 226 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTTHHHHHGGG-TTCSCEEETTCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccchhHHHHHHHh-cchhHHHHHHHH
Confidence 469999999999999999999987544322110 0 0111111111 234566899996
No 278
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.74 E-value=0.00072 Score=49.37 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=21.1
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|+.|+|||||++.++.-
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998875
No 279
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.74 E-value=0.00071 Score=50.51 Aligned_cols=23 Identities=17% Similarity=0.078 Sum_probs=20.7
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|+.|+|||||++.++.-
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcC
Confidence 58999999999999999988764
No 280
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.73 E-value=0.00073 Score=49.95 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=20.7
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|+.|+|||||++.++.-
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999988754
No 281
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.73 E-value=0.00096 Score=51.11 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
.+++.|.|+.|+||||||..++...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3689999999999999999998864
No 282
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.72 E-value=0.00064 Score=52.54 Aligned_cols=26 Identities=15% Similarity=0.123 Sum_probs=23.0
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
..++.|.|+.|+|||||+..++..+.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCC
Confidence 36899999999999999999998743
No 283
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.72 E-value=0.002 Score=49.85 Aligned_cols=43 Identities=14% Similarity=0.159 Sum_probs=29.3
Q ss_pred cccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 31 GIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 31 Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
|...-...|...+. +-.. ..++.|.|.+|+||||||..++...
T Consensus 28 gi~TG~~~LD~~~g-Gl~~-G~LiiIaG~pG~GKTt~al~ia~~~ 70 (338)
T 4a1f_A 28 GIPTGFVQLDNYTS-GFNK-GSLVIIGARPSMGKTSLMMNMVLSA 70 (338)
T ss_dssp SBCCSCHHHHHHHC-SBCT-TCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cccCCChHHHHHhc-CCCC-CcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 43333455555553 1111 3689999999999999999988773
No 284
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.72 E-value=0.00088 Score=50.11 Aligned_cols=25 Identities=20% Similarity=0.224 Sum_probs=22.3
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
.++.|+|++|+|||||+..++..+.
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 6999999999999999999987643
No 285
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.72 E-value=0.00096 Score=49.97 Aligned_cols=22 Identities=23% Similarity=0.567 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 040354 53 KLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 53 ~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.++|+|++|+|||||++.++..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999986
No 286
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=96.72 E-value=0.0015 Score=53.31 Aligned_cols=47 Identities=4% Similarity=-0.024 Sum_probs=33.2
Q ss_pred cccccchHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 29 LVGIESRTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 29 ~~Gr~~~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
.+.|.+..+.+.+........ ..+|.+.|++|+||||+|+.+...+.
T Consensus 374 ~f~rpeV~~vLr~~~~~~~~~-~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 374 WFSYPEVVKILRESNPPRPKQ-GFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp TTSCHHHHHHHHHHSCCGGGC-CEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred cccChhhHHHHHHhccccccc-ceEEEecccCCCCHHHHHHHHHHHHH
Confidence 445555555555544322222 57899999999999999999998864
No 287
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.71 E-value=0.00043 Score=52.42 Aligned_cols=25 Identities=16% Similarity=0.193 Sum_probs=19.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
..+|+|.|+.|+||||+|+.+....
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999988754
No 288
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.71 E-value=0.001 Score=48.31 Aligned_cols=23 Identities=17% Similarity=0.198 Sum_probs=20.5
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.++.|.|++|+||||||.+++..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~ 46 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWN 46 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999887765
No 289
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.71 E-value=0.0013 Score=47.96 Aligned_cols=26 Identities=15% Similarity=0.413 Sum_probs=23.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
...+.|.|++|+||||+++.+...+.
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 47899999999999999999998864
No 290
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.71 E-value=0.0011 Score=50.40 Aligned_cols=26 Identities=19% Similarity=0.073 Sum_probs=23.0
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
..++.++|++|+||||++..++..+.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999999988743
No 291
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.69 E-value=0.00082 Score=50.06 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.8
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|+.|+|||||++.++.-
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 58999999999999999998764
No 292
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.69 E-value=0.0013 Score=44.21 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.5
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
+.+.+.|.+|+|||||+..+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999998865
No 293
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.68 E-value=0.0011 Score=49.91 Aligned_cols=24 Identities=13% Similarity=0.084 Sum_probs=21.8
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
.++.|.|++|+|||||+..++..+
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHH
Confidence 599999999999999999988763
No 294
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.68 E-value=0.00083 Score=50.35 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=20.8
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|+.|+|||||++.++.-
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999988754
No 295
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.68 E-value=0.00084 Score=50.15 Aligned_cols=23 Identities=22% Similarity=0.177 Sum_probs=20.5
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|+.|+|||||++.++.-
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 58999999999999999987753
No 296
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.68 E-value=0.00084 Score=49.70 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=20.6
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|+.|+|||||++.++.-
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 58999999999999999988754
No 297
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.67 E-value=0.00084 Score=50.53 Aligned_cols=23 Identities=22% Similarity=0.148 Sum_probs=20.6
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|+.|+|||||++.++.-
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 58999999999999999988754
No 298
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.66 E-value=0.00087 Score=49.72 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=20.8
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|+.|+|||||++.++.-
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998764
No 299
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.64 E-value=0.0012 Score=45.98 Aligned_cols=24 Identities=29% Similarity=0.318 Sum_probs=21.4
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
.+.+|+|+.|+|||||+.+++.-+
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 488999999999999999988753
No 300
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.64 E-value=0.0016 Score=44.51 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
...+.|.|.+|+|||||...+.+.
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999763
No 301
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.63 E-value=0.0014 Score=47.80 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
..+++|.|++|+||||+++.+...+
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 5689999999999999999998754
No 302
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.63 E-value=0.0015 Score=47.72 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=22.6
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
...|.|.|..|+||||+++.+...+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999874
No 303
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.62 E-value=0.002 Score=53.11 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=23.4
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
..++.|+|++|+|||||++.+...+.
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhc
Confidence 47899999999999999999998854
No 304
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.60 E-value=0.0041 Score=49.88 Aligned_cols=25 Identities=16% Similarity=0.169 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
..++.|.|.+|+||||||..++...
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3699999999999999999988874
No 305
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.59 E-value=0.0017 Score=47.74 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=22.0
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
..++.+.|.+|+||||++..++...
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 5788999999999999999998653
No 306
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.58 E-value=0.0018 Score=50.27 Aligned_cols=25 Identities=16% Similarity=0.111 Sum_probs=22.7
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
-.++.|+|++|+|||||+..++...
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4799999999999999999998874
No 307
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.57 E-value=0.0027 Score=50.74 Aligned_cols=25 Identities=24% Similarity=0.179 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
..++.++|++|+||||++..++..+
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999888764
No 308
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.55 E-value=0.0011 Score=47.45 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=20.9
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
..+.|.|++|+||||||..+...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 67899999999999999999875
No 309
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.55 E-value=0.0017 Score=50.55 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=21.7
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
...++|+|++|+|||||++.+...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 368899999999999999998876
No 310
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.54 E-value=0.0011 Score=46.11 Aligned_cols=21 Identities=33% Similarity=0.457 Sum_probs=19.2
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 040354 53 KLGISGSGDIGKITIAGAIFN 73 (172)
Q Consensus 53 ~i~I~G~~GiGKTtLa~~~~~ 73 (172)
-+.|.|.+|+|||||++.+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999998876
No 311
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.54 E-value=0.0012 Score=49.31 Aligned_cols=22 Identities=36% Similarity=0.326 Sum_probs=20.1
Q ss_pred eEEEEEcCCCchHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFN 73 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~ 73 (172)
.+++|.|+.|+|||||++.++.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999875
No 312
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.54 E-value=0.0016 Score=44.08 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.-.+.+.|.+|+|||||+..+.+.
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 456889999999999999999875
No 313
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.53 E-value=0.0052 Score=49.12 Aligned_cols=38 Identities=18% Similarity=0.148 Sum_probs=27.2
Q ss_pred HHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 36 TEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 36 ~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
...|...+. +-.. ..++.|.|.+|+||||||..++...
T Consensus 187 ~~~LD~~lg-Gl~~-G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 187 FKELDQLIG-TLGP-GSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp CHHHHHHHC-CCCT-TCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CHhhhhhcC-CcCC-CcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 444545552 2212 3689999999999999999988874
No 314
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.53 E-value=0.0017 Score=45.00 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
...+.|.|.+|+|||||+..+.+.
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 467899999999999999999874
No 315
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=96.53 E-value=0.00064 Score=56.49 Aligned_cols=50 Identities=16% Similarity=0.025 Sum_probs=34.1
Q ss_pred CCccccccchHHHHHHHhcCCCCC--------CeeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 26 NNHLVGIESRTEEIESVLGVGSTM--------NICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 26 ~~~~~Gr~~~~~~l~~~l~~~~~~--------~~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
...++|.+...+.+.-.+...... ....+.|+|++|+|||+||+.+++..
T Consensus 294 ~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 294 APSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp SSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred cchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 356889887666654444332100 01168999999999999999998864
No 316
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.52 E-value=0.0016 Score=43.82 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=20.3
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
-.+.+.|.+|+|||||+..+...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35889999999999999999865
No 317
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.52 E-value=0.0018 Score=50.48 Aligned_cols=39 Identities=23% Similarity=0.164 Sum_probs=29.0
Q ss_pred HHHHHHHhc-CCCCCCeeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 36 TEEIESVLG-VGSTMNICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 36 ~~~l~~~l~-~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
...|...|. ..-.. ..++.|+|++|+||||||.+++...
T Consensus 46 ~~~LD~~Lg~GGi~~-G~i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 46 SLAIDIATGVGGYPR-GRIVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp CHHHHHHTSSSSEET-TEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CHHHHHHhccCCccC-CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 455666665 22222 4799999999999999999998874
No 318
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.51 E-value=0.0013 Score=52.73 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=22.4
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
+.+.|.|++|+|||+++..+...+.
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l~ 70 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEALI 70 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4899999999999999999998853
No 319
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.49 E-value=0.0019 Score=51.05 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
..+++|.|+.|+||||||..++...
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHC
Confidence 3689999999999999999999874
No 320
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.47 E-value=0.007 Score=43.71 Aligned_cols=82 Identities=17% Similarity=0.058 Sum_probs=46.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhcc-ccCc------Cc-----ccH---------------HHHHHHhCCCeeEEEE
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKITRR-FEEF------PN-----IGL---------------NFQSKRLTRKKLLIVF 103 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~-f~~~------~~-----~~~---------------~~~~~~l~~~~~Llvl 103 (172)
..+..++|+.|+||||.+...+.....+ .... ++ .+. ..+...+.+.--+|++
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~ge~~i~s~~g~~~~a~~~~~~~~~~~~~~~~~dvViI 107 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSEEDVVSHNGLKVKAVPVSASKDIFKHITEEMDVIAI 107 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-----------------CCEEECSSGGGGGGGCCSSCCEEEE
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcchHHHHHhhcCCeeEEeecCCHHHHHHHHhcCCCEEEE
Confidence 4788999999999999987777663221 1111 00 000 1111111222238999
Q ss_pred ecCC--CHHhHHHHHhhccCCCCCcEEEEEeCCh
Q 040354 104 DDVH--HPRQIDCLIECLDWFASASRIIIISRDK 135 (172)
Q Consensus 104 Ddv~--~~~~~~~l~~~~~~~~~~s~iiiTtr~~ 135 (172)
|++. +.++++.+....+ .+..||+|.++.
T Consensus 108 DEaQF~~~~~V~~l~~l~~---~~~~Vi~~Gl~~ 138 (214)
T 2j9r_A 108 DEVQFFDGDIVEVVQVLAN---RGYRVIVAGLDQ 138 (214)
T ss_dssp CCGGGSCTTHHHHHHHHHH---TTCEEEEEECSB
T ss_pred ECcccCCHHHHHHHHHHhh---CCCEEEEEeccc
Confidence 9995 3455544433222 367899999953
No 321
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=96.46 E-value=0.0061 Score=53.71 Aligned_cols=88 Identities=9% Similarity=0.067 Sum_probs=51.7
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH--Hhcccc-----------CcCcc----------------c-----HHHHHHHhCCC
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK--ITRRFE-----------EFPNI----------------G-----LNFQSKRLTRK 97 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~--~~~~f~-----------~~~~~----------------~-----~~~~~~~l~~~ 97 (172)
.+++|+|+.|.||||+++.+ .- +..+.. ..+.+ . .-.+...+...
T Consensus 790 ~i~~ItGpNgsGKSTlLr~i-Gl~~~~aqiG~~Vpq~~~~l~v~d~I~~rig~~d~~~~~~stf~~em~~~a~al~la~~ 868 (1022)
T 2o8b_B 790 YCVLVTGPNMGGKSTLMRQA-GLLAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATA 868 (1022)
T ss_dssp CEEEEECCTTSSHHHHHHHH-HHHHHHHTTTCCEESSEEEECCCSBEEEECC---------CHHHHHHHHHHHHHHHCCT
T ss_pred cEEEEECCCCCChHHHHHHH-HHHHHHhheeEEeccCcCCCCHHHHHHHHcCCHHHHhhchhhhHHHHHHHHHHHHhCCC
Confidence 68999999999999999988 43 111111 00111 0 00111223457
Q ss_pred eeEEEEecCC---CHHh----HHHHHhhccCCCCCcEEEEEeCChhHHHhc
Q 040354 98 KLLIVFDDVH---HPRQ----IDCLIECLDWFASASRIIIISRDKQALISC 141 (172)
Q Consensus 98 ~~LlvlDdv~---~~~~----~~~l~~~~~~~~~~s~iiiTtr~~~~~~~~ 141 (172)
+-|++||+.. +..+ ...+...+.. ..|+.+|++|++..++...
T Consensus 869 ~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~-~~g~~vl~~TH~~el~~~~ 918 (1022)
T 2o8b_B 869 HSLVLVDELGRGTATFDGTAIANAVVKELAE-TIKCRTLFSTHYHSLVEDY 918 (1022)
T ss_dssp TCEEEEECTTTTSCHHHHHHHHHHHHHHHHH-TSCCEEEEECCCHHHHHHT
T ss_pred CcEEEEECCCCCCChHHHHHHHHHHHHHHHh-cCCCEEEEEeCCHHHHHHh
Confidence 8899999994 3222 1222333321 1378899999998877653
No 322
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.46 E-value=0.0016 Score=49.88 Aligned_cols=24 Identities=29% Similarity=0.315 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++.|+|+.|+|||||++.+...
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred ccEEEEEecCCCCHHHHHHHHHhh
Confidence 689999999999999999999875
No 323
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.46 E-value=0.0024 Score=51.03 Aligned_cols=25 Identities=24% Similarity=0.178 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
+.++.|+|++|+||||++..++...
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999988764
No 324
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.45 E-value=0.0042 Score=49.41 Aligned_cols=62 Identities=11% Similarity=0.084 Sum_probs=43.1
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhccccCc--------------------Cc--c-cHHHHHHHhCCCeeEEEEecCC
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKITRRFEEF--------------------PN--I-GLNFQSKRLTRKKLLIVFDDVH 107 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~--------------------~~--~-~~~~~~~~l~~~~~LlvlDdv~ 107 (172)
..++.|+|+.|+||||+++.++..+...-... .. + ....++..+...+-++++.++.
T Consensus 167 ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiR 246 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIR 246 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCC
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCcC
Confidence 47999999999999999999998753220000 01 1 3456677777777788888887
Q ss_pred CHHhH
Q 040354 108 HPRQI 112 (172)
Q Consensus 108 ~~~~~ 112 (172)
+....
T Consensus 247 d~et~ 251 (418)
T 1p9r_A 247 DLETA 251 (418)
T ss_dssp SHHHH
T ss_pred CHHHH
Confidence 65443
No 325
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=96.45 E-value=0.0012 Score=52.49 Aligned_cols=24 Identities=13% Similarity=0.306 Sum_probs=21.8
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
..+++|.|++|+|||||.+.+...
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CeEEEEECCCCCcHHHHHHHHhCC
Confidence 469999999999999999999873
No 326
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.44 E-value=0.0023 Score=46.72 Aligned_cols=24 Identities=13% Similarity=0.026 Sum_probs=20.8
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
-.+.+.|.||+||||+|..+....
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHH
Confidence 568889999999999998888774
No 327
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.44 E-value=0.0036 Score=48.31 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
..+++|.|++|+|||||.+.+...
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 479999999999999999999865
No 328
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.43 E-value=0.002 Score=43.37 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.4
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
-.+.+.|.+|+|||||+..+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999998865
No 329
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.42 E-value=0.002 Score=43.40 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
...+.+.|.+|+|||||+..+...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 356889999999999999998875
No 330
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.42 E-value=0.0018 Score=46.33 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=21.6
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
.+++|.|++|+||||+++.+...+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 579999999999999999998764
No 331
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.42 E-value=0.0042 Score=56.01 Aligned_cols=23 Identities=17% Similarity=0.214 Sum_probs=20.6
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
..++|+|+.|+|||||++.+...
T Consensus 417 ~~~~ivG~sGsGKSTl~~ll~g~ 439 (1284)
T 3g5u_A 417 QTVALVGNSGCGKSTTVQLMQRL 439 (1284)
T ss_dssp CEEEEECCSSSSHHHHHHHTTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999988754
No 332
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.41 E-value=0.0015 Score=49.47 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=21.0
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|+.|+|||||++.++.-
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 58999999999999999998765
No 333
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.41 E-value=0.0021 Score=43.42 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=20.5
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
-.+.+.|.+|+|||||+..+.+.
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999999875
No 334
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.41 E-value=0.0021 Score=44.72 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.-.|.++|.+|+|||||+..+...
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHHcC
Confidence 356889999999999999999875
No 335
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.40 E-value=0.0027 Score=50.82 Aligned_cols=26 Identities=19% Similarity=0.118 Sum_probs=23.0
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
+.++.++|++|+||||++..++..+.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999887643
No 336
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.40 E-value=0.0019 Score=44.00 Aligned_cols=24 Identities=21% Similarity=0.422 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.-.+.|.|.+|+|||||+..+.+.
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 457899999999999999998764
No 337
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.40 E-value=0.0043 Score=47.92 Aligned_cols=24 Identities=13% Similarity=0.115 Sum_probs=22.0
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
..++.|+|++|+||||||..++..
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 479999999999999999998876
No 338
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.39 E-value=0.0018 Score=50.29 Aligned_cols=23 Identities=22% Similarity=0.078 Sum_probs=21.0
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|++|+|||||++.++.-
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTS
T ss_pred CEEEEECCCCccHHHHHHHHHcC
Confidence 58999999999999999998864
No 339
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.39 E-value=0.0023 Score=43.14 Aligned_cols=22 Identities=23% Similarity=0.178 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 040354 53 KLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 53 ~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+.+.|.+|+|||||+..+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999875
No 340
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.39 E-value=0.0022 Score=43.39 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.3
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
-.+.+.|.+|+|||||+..+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45789999999999999998875
No 341
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.39 E-value=0.0036 Score=56.56 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.9
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
..++|+|+.|+|||||++.+...
T Consensus 445 ~~vaivG~sGsGKSTll~ll~~~ 467 (1321)
T 4f4c_A 445 QTVALVGSSGCGKSTIISLLLRY 467 (1321)
T ss_dssp CEEEEEECSSSCHHHHHHHHTTS
T ss_pred cEEEEEecCCCcHHHHHHHhccc
Confidence 58999999999999999988765
No 342
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.38 E-value=0.0022 Score=43.54 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.-.+.+.|.+|+|||||+..+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456899999999999999998865
No 343
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.38 E-value=0.0011 Score=48.16 Aligned_cols=24 Identities=21% Similarity=0.069 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
..+++|.|+.|+||||+++.+...
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 479999999999999999988765
No 344
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.37 E-value=0.0022 Score=43.40 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=20.6
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
-.+.+.|.+|+|||||+..+.+.
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46889999999999999999875
No 345
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.37 E-value=0.0025 Score=46.63 Aligned_cols=25 Identities=32% Similarity=0.234 Sum_probs=21.7
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
...++|.|++|+||||+|+.+...+
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999998764
No 346
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.37 E-value=0.0025 Score=52.13 Aligned_cols=25 Identities=16% Similarity=0.121 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
..+|.++|++|+||||+|+.+...+
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4789999999999999999997764
No 347
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.37 E-value=0.0021 Score=49.94 Aligned_cols=40 Identities=23% Similarity=0.205 Sum_probs=28.6
Q ss_pred hHHHHHHHhc-CCCCCCeeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 35 RTEEIESVLG-VGSTMNICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 35 ~~~~l~~~l~-~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
-...|...|. .+-.. ..++.|+|++|+||||||.+++...
T Consensus 45 G~~~LD~~Lg~GGl~~-G~iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 45 GSISLDVALGIGGLPR-GRVIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp SCHHHHHHTSSSSEET-TSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCHHHHHHhccCCccC-CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3455555555 22111 4689999999999999999988763
No 348
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.37 E-value=0.0024 Score=46.36 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
..++.|.|.+|+|||+||.+++..
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 368999999999999999887654
No 349
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=96.35 E-value=0.0026 Score=45.41 Aligned_cols=28 Identities=11% Similarity=0.042 Sum_probs=24.3
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhccc
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKITRRF 79 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~~~~f 79 (172)
.+|.|.|+.|+||||+++.++..+.-.|
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~ 34 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPL 34 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCE
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCE
Confidence 5899999999999999999999865443
No 350
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.35 E-value=0.0022 Score=44.45 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.-.+.++|.+|+|||||+..+.+.
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999999875
No 351
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.35 E-value=0.0021 Score=50.34 Aligned_cols=23 Identities=22% Similarity=0.108 Sum_probs=21.0
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|++|+|||||.+.++.-
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCcHHHHHHHHHHcC
Confidence 58999999999999999998864
No 352
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.35 E-value=0.0034 Score=56.57 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=20.9
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
..++|+|+.|+|||||++.+..-
T Consensus 1060 e~v~ivG~sGsGKSTl~~~l~g~ 1082 (1284)
T 3g5u_A 1060 QTLALVGSSGCGKSTVVQLLERF 1082 (1284)
T ss_dssp SEEEEECSSSTTHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999998864
No 353
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.34 E-value=0.0023 Score=43.33 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.-.+.+.|.+|+|||||+..+...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 356899999999999999998864
No 354
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.34 E-value=0.0024 Score=43.67 Aligned_cols=24 Identities=21% Similarity=0.448 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.-.+.+.|.+|+|||||+..+...
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 457899999999999999999864
No 355
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.34 E-value=0.0026 Score=45.29 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=21.8
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
...+.++|++|+|||||+..+...
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 568899999999999999999875
No 356
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.33 E-value=0.0041 Score=43.10 Aligned_cols=24 Identities=17% Similarity=0.275 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
...+.|.|.+|+|||||+..+.+.
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 478899999999999999988764
No 357
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.33 E-value=0.0036 Score=45.18 Aligned_cols=26 Identities=15% Similarity=0.151 Sum_probs=23.1
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
...|.|.|+.|+||||+++.+...+.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 36899999999999999999988754
No 358
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=96.32 E-value=0.0049 Score=51.01 Aligned_cols=26 Identities=23% Similarity=0.183 Sum_probs=23.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
..+|.|.|++|+||||+|+.+...+.
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 57899999999999999999988754
No 359
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.32 E-value=0.0034 Score=47.66 Aligned_cols=22 Identities=18% Similarity=0.262 Sum_probs=20.4
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|++|+|||||++.+. .
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~ 187 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-G 187 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-S
T ss_pred cEEEEECCCCCCHHHHHHHHH-H
Confidence 588999999999999999998 5
No 360
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.32 E-value=0.0017 Score=50.58 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=21.0
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|++|+|||||++.++.-
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 58999999999999999998864
No 361
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.32 E-value=0.0025 Score=43.06 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.-.+.+.|.+|+|||||+..+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 356889999999999999999874
No 362
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.32 E-value=0.0028 Score=44.86 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.-.|.+.|.+|+|||||+..+.+.
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 467899999999999999988864
No 363
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.32 E-value=0.002 Score=43.68 Aligned_cols=23 Identities=17% Similarity=0.443 Sum_probs=20.3
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
-.+.+.|.+|+|||||+..+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999998864
No 364
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.32 E-value=0.0033 Score=43.00 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=21.7
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
...+.|.|.+|+|||||+..+.+.
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 567899999999999999999875
No 365
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.31 E-value=0.0035 Score=42.92 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
...+.+.|.+|+|||||+..+...
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 567899999999999999998875
No 366
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.31 E-value=0.0032 Score=47.67 Aligned_cols=26 Identities=19% Similarity=0.000 Sum_probs=22.7
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
..++.++|++|+||||++..++....
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~ 123 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYK 123 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999887743
No 367
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.30 E-value=0.0025 Score=44.43 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.--+.|.|.+|+|||||+..+.+.
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 467899999999999999888765
No 368
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.30 E-value=0.0024 Score=43.31 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=19.3
Q ss_pred eEEEEEcCCCchHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFN 73 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~ 73 (172)
-.+.+.|.+|+|||||+..+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4688999999999999998863
No 369
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.29 E-value=0.0027 Score=43.38 Aligned_cols=24 Identities=29% Similarity=0.297 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
...+.|.|.+|+|||||+..+.+.
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 567899999999999999999875
No 370
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.28 E-value=0.0031 Score=42.81 Aligned_cols=25 Identities=24% Similarity=0.170 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
..+..|+|+.|+|||||..+++--.
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3688999999999999999887653
No 371
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.28 E-value=0.0025 Score=43.60 Aligned_cols=24 Identities=33% Similarity=0.271 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
...|.|.|.+|+|||||+..+.+.
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 568899999999999999998764
No 372
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.27 E-value=0.0024 Score=43.97 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.6
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
..+.|.|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 56889999999999999999864
No 373
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.27 E-value=0.003 Score=48.94 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
..+++|+|.+|+|||||...+...
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 589999999999999999999875
No 374
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.27 E-value=0.0023 Score=50.66 Aligned_cols=37 Identities=16% Similarity=0.231 Sum_probs=25.5
Q ss_pred HHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHH
Q 040354 36 TEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFN 73 (172)
Q Consensus 36 ~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~ 73 (172)
...|..+|...-.. -.++.|+|++|+|||||+..++-
T Consensus 164 ~~~LD~lLgGGI~~-Gei~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 164 SKNLDTLLGGGVET-GSITELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp CHHHHHHTTTSEET-TSEEEEEESTTSSHHHHHHHHHH
T ss_pred ChhHHHHhcCCcCC-CcEEEEEcCCCCChHHHHHHHHH
Confidence 34445555322111 36999999999999999997763
No 375
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.27 E-value=0.0027 Score=43.92 Aligned_cols=24 Identities=17% Similarity=0.236 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.-.|.|.|.+|+|||||+..+.+.
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 467899999999999999999874
No 376
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.27 E-value=0.0034 Score=47.44 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=22.6
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
.++|.|+|.||+||||+|..++..+.
T Consensus 41 ~~vI~v~~KGGvGKTT~a~nLA~~La 66 (307)
T 3end_A 41 AKVFAVYGKGGIGKSTTSSNLSAAFS 66 (307)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCccHHHHHHHHHHHHH
Confidence 68888889999999999998887744
No 377
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.26 E-value=0.0028 Score=42.98 Aligned_cols=24 Identities=25% Similarity=0.142 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
...+.+.|.+|+|||||+..+...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 467899999999999999999764
No 378
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=96.26 E-value=0.005 Score=50.64 Aligned_cols=26 Identities=23% Similarity=0.138 Sum_probs=22.8
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
..+|.+.|++|+||||+|+.+...+.
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~ 397 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQ 397 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhh
Confidence 47899999999999999999988643
No 379
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.25 E-value=0.0012 Score=48.88 Aligned_cols=25 Identities=28% Similarity=0.294 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
...|.|.|..|+||||+++.+...+
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999988764
No 380
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.25 E-value=0.0024 Score=43.19 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=18.7
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 040354 53 KLGISGSGDIGKITIAGAIFN 73 (172)
Q Consensus 53 ~i~I~G~~GiGKTtLa~~~~~ 73 (172)
.+.+.|.+|+|||||+..+.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 578999999999999998864
No 381
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.25 E-value=0.0028 Score=44.17 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.--|.|+|.+|+|||||+..+.+.
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 457899999999999999998875
No 382
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.24 E-value=0.0027 Score=44.39 Aligned_cols=23 Identities=30% Similarity=0.302 Sum_probs=20.7
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
..+.+.|.+|+|||||+..+.+.
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 57899999999999999999874
No 383
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.24 E-value=0.0029 Score=43.69 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.-.+.+.|.+|+|||||+..+.+.
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHhC
Confidence 356889999999999999999875
No 384
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.24 E-value=0.0031 Score=44.30 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.--+.|.|.+|+|||||...+.+.
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 356899999999999999998853
No 385
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=96.23 E-value=0.0039 Score=46.05 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=21.7
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhc
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKITR 77 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~~~ 77 (172)
++|.|.|.||+||||+|..++..+..
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~ 27 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHA 27 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHH
Confidence 46777899999999999998887543
No 386
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.23 E-value=0.003 Score=43.54 Aligned_cols=24 Identities=33% Similarity=0.570 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.-.|.|.|.+|+|||||+..+.+.
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 467899999999999999999865
No 387
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.22 E-value=0.0035 Score=50.48 Aligned_cols=25 Identities=16% Similarity=0.116 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
..+|.++|++|+||||+++.+....
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l 63 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYL 63 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4688999999999999999998763
No 388
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.22 E-value=0.0025 Score=43.62 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.-.+.|.|.+|+|||||+..+.+.
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 456889999999999999998754
No 389
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.22 E-value=0.0023 Score=43.93 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.--+.+.|.+|+|||||+..+.+.
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356889999999999999999875
No 390
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.22 E-value=0.0029 Score=43.17 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.4
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
-.+.|.|.+|+|||||+..+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999999864
No 391
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.22 E-value=0.003 Score=44.01 Aligned_cols=24 Identities=17% Similarity=0.368 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.-.|.|+|.+|+|||||+..+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 467899999999999999998875
No 392
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.21 E-value=0.0082 Score=48.07 Aligned_cols=25 Identities=16% Similarity=0.069 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
..++.|.|.+|+||||||..++...
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~ 221 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNM 221 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHH
Confidence 3689999999999999999988773
No 393
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.21 E-value=0.0022 Score=50.02 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=21.4
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
..++|+|+.|+|||||++.+...
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 58999999999999999999876
No 394
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.21 E-value=0.0026 Score=44.36 Aligned_cols=24 Identities=17% Similarity=0.580 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
...+.|.|.+|+|||||+..+.+.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 578999999999999999998754
No 395
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.20 E-value=0.003 Score=43.60 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.-.+.|.|.+|+|||||+..+.+.
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 467899999999999999999875
No 396
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.19 E-value=0.0076 Score=49.08 Aligned_cols=25 Identities=16% Similarity=0.050 Sum_probs=21.6
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
..+|.|+|.+|+||||++..++...
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998653
No 397
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.19 E-value=0.0032 Score=43.35 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=20.3
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
-.+.+.|.+|+|||||+..+.+.
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999998864
No 398
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.19 E-value=0.0031 Score=43.90 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.-.|.|.|.+|+|||||+..+...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356889999999999999999875
No 399
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.18 E-value=0.0032 Score=43.29 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
...|.|.|.+|+|||||+..+...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 467899999999999999999875
No 400
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.18 E-value=0.0032 Score=43.72 Aligned_cols=24 Identities=33% Similarity=0.286 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.--+.|.|.+|+|||||++.+.+.
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHHhh
Confidence 456899999999999999777665
No 401
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.18 E-value=0.0078 Score=54.41 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=20.5
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
..++|+|+.|+|||||+..+..-
T Consensus 1106 e~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1106 QTLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp CEEEEECSTTSSTTSHHHHHTTS
T ss_pred CEEEEECCCCChHHHHHHHHhcC
Confidence 57999999999999999988754
No 402
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.17 E-value=0.0031 Score=48.93 Aligned_cols=36 Identities=31% Similarity=0.505 Sum_probs=26.9
Q ss_pred HHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 37 EEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 37 ~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
..|...+.-..+ .+++|.|++|+|||||++.+.+..
T Consensus 60 ~ald~ll~i~~G---q~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 60 RAIDGLLTCGIG---QRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp HHHHHHSCEETT---CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEeeeeecCC---CEEEEECCCCCCHHHHHHHHhcCC
Confidence 344444443332 599999999999999999999873
No 403
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.16 E-value=0.0032 Score=49.01 Aligned_cols=39 Identities=23% Similarity=0.268 Sum_probs=28.0
Q ss_pred HHHHHHHhc-CCCCCCeeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 36 TEEIESVLG-VGSTMNICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 36 ~~~l~~~l~-~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
...|...|. .+-.. ..++.|+|++|+||||||.+++...
T Consensus 48 ~~~LD~~Lg~GGl~~-G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 48 SLSLDIALGAGGLPM-GRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp CHHHHHHTSSSSEET-TSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CHHHHHHhccCCccC-CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 455555554 22111 4689999999999999999988763
No 404
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.16 E-value=0.0034 Score=43.75 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.-.|.|.|.+|+|||||+..+.+.
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHhcC
Confidence 356899999999999999999876
No 405
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.16 E-value=0.0033 Score=43.10 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
...+.+.|.+|+|||||+..+...
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456899999999999999998875
No 406
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.16 E-value=0.003 Score=49.84 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=20.5
Q ss_pred eEEEEEcCCCchHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFN 73 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~ 73 (172)
.+++|.|++|+|||||++.++.
T Consensus 48 e~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCChHHHHHHHHhC
Confidence 5899999999999999999886
No 407
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.16 E-value=0.0034 Score=43.08 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=20.3
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
-.+.+.|.+|+|||||+..+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 56889999999999999998764
No 408
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.15 E-value=0.006 Score=47.08 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
..+++|.|.+|+|||||+..+....
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 5899999999999999999987653
No 409
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.15 E-value=0.0029 Score=43.74 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 040354 53 KLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 53 ~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+.+.|.+|+|||||+..+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999998865
No 410
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.15 E-value=0.0034 Score=44.08 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
...|.|.|.+|+|||||+..+...
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 467899999999999999998865
No 411
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.15 E-value=0.0033 Score=43.21 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
...+.|.|.+|+|||||+..+.+.
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 467899999999999999999854
No 412
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.14 E-value=0.0047 Score=47.09 Aligned_cols=38 Identities=26% Similarity=0.254 Sum_probs=26.9
Q ss_pred HHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHH
Q 040354 36 TEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 36 ~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
...|...|...-.. ..++.|+|++|+|||+||..++..
T Consensus 84 ~~~LD~~l~GGl~~-g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 84 SSELDSVLGGGLES-QSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp CHHHHHHTTSSEET-TEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ChhHHHhcCCCccC-CeEEEEECCCCCCHHHHHHHHHHH
Confidence 34455555322111 479999999999999999998875
No 413
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.14 E-value=0.0047 Score=43.50 Aligned_cols=22 Identities=27% Similarity=0.300 Sum_probs=19.7
Q ss_pred eEEEEEcCCCchHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFN 73 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~ 73 (172)
..+.+.|.+|+|||||+..+.+
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5688999999999999998875
No 414
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.14 E-value=0.0035 Score=42.93 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.-.+.+.|.+|+|||||+..+...
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 457899999999999999998875
No 415
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.14 E-value=0.004 Score=47.69 Aligned_cols=25 Identities=12% Similarity=0.060 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
..++.|+|++|+||||||..++...
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHH
Confidence 3689999999999999999988763
No 416
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.13 E-value=0.0034 Score=44.13 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.-.|.|.|.+|+|||||+..+.+.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 567899999999999999999875
No 417
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.13 E-value=0.0035 Score=43.90 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.-.|.|.|.+|+|||||+..+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 467899999999999999998875
No 418
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.12 E-value=0.0027 Score=44.10 Aligned_cols=24 Identities=25% Similarity=0.580 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
...+.|.|.+|+|||||+..+.+.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC
Confidence 467899999999999999998875
No 419
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=96.11 E-value=0.0041 Score=51.95 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=23.0
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
..+|.|.|++|+||||+|+.+...+
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999998875
No 420
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.10 E-value=0.0028 Score=51.06 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=21.4
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|.|+.|+|||||++.+++.
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCc
Confidence 68999999999999999999885
No 421
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.10 E-value=0.0031 Score=44.38 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=19.0
Q ss_pred EEEEcCCCchHHHHHHHHHHH
Q 040354 54 LGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 54 i~I~G~~GiGKTtLa~~~~~~ 74 (172)
+.|+|.+|+|||++|.+++..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 689999999999999998854
No 422
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=96.10 E-value=0.0069 Score=58.03 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=20.5
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
+.+.++|++|+|||++|+.+...
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~ 1290 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRN 1290 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CeEEEECCCCCCHHHHHHHHHhc
Confidence 58899999999999999887765
No 423
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.09 E-value=0.0054 Score=44.59 Aligned_cols=27 Identities=15% Similarity=0.155 Sum_probs=23.6
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhc
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKITR 77 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~~ 77 (172)
...|.|.|..|+||||+++.+...+..
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 578999999999999999999987543
No 424
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.09 E-value=0.0036 Score=44.38 Aligned_cols=24 Identities=17% Similarity=0.353 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.-.+.|.|.+|+|||||+..+.+.
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 467899999999999999998865
No 425
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.09 E-value=0.0036 Score=44.05 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=21.6
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
...|.|.|.+|+|||||+..+.+.
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEEECCCCcCHHHHHHHHHhC
Confidence 567899999999999999999875
No 426
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.09 E-value=0.0038 Score=43.42 Aligned_cols=24 Identities=25% Similarity=0.224 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.-.|.|.|.+|+|||||+..+.+.
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 457899999999999999999875
No 427
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.08 E-value=0.0039 Score=43.34 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.-.|.|+|.+|+|||||+..+.+.
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 467899999999999999999875
No 428
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.07 E-value=0.0037 Score=44.44 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.-.+.|+|.+|+|||||+..+...
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 567899999999999999999875
No 429
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.07 E-value=0.0018 Score=45.84 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFN 73 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~ 73 (172)
...++|.|.+|+|||||.+.+..
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999987764
No 430
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.07 E-value=0.0037 Score=43.63 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.-.|.|.|.+|+|||||+..+.+.
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999999875
No 431
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.07 E-value=0.0043 Score=47.02 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=22.0
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
...++|.|.+|+|||||...+...
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 578999999999999999999875
No 432
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.06 E-value=0.004 Score=43.34 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.-.|.|.|.+|+|||||+..+.+.
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 467899999999999999999875
No 433
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.06 E-value=0.004 Score=43.48 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.-.+.++|.+|+|||||+..+.+.
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 467899999999999999998875
No 434
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.06 E-value=0.0039 Score=44.23 Aligned_cols=24 Identities=17% Similarity=0.099 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
...+.|.|.+|+|||||+..+...
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 467899999999999999999875
No 435
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.06 E-value=0.0034 Score=42.93 Aligned_cols=24 Identities=25% Similarity=0.355 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.-.|.|.|.+|+|||||+..+.+.
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 567899999999999999988754
No 436
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.06 E-value=0.004 Score=43.39 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.-.+.|.|.+|+|||||+..+.+.
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 456889999999999999998865
No 437
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.06 E-value=0.0046 Score=43.30 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.8
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.-+.|.|++|+||||+|..+...
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 57899999999999999998874
No 438
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=96.05 E-value=0.0062 Score=45.23 Aligned_cols=24 Identities=21% Similarity=0.425 Sum_probs=21.6
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
...+.+.|.+|+|||||...+++.
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 578899999999999999999865
No 439
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.04 E-value=0.0039 Score=43.49 Aligned_cols=24 Identities=17% Similarity=0.320 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.-.|.|+|.+|+|||||+..+...
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 467899999999999999999874
No 440
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=96.03 E-value=0.0031 Score=47.89 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=18.5
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 040354 53 KLGISGSGDIGKITIAGAIFN 73 (172)
Q Consensus 53 ~i~I~G~~GiGKTtLa~~~~~ 73 (172)
.++|.|++|+|||||++.++.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 459999999999999999764
No 441
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.03 E-value=0.0042 Score=43.15 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
...|.|.|.+|+|||||+..+...
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 467899999999999999998865
No 442
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.02 E-value=0.0043 Score=43.09 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.-.|.|.|.+|+|||||+..+.+.
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 357899999999999999999875
No 443
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.02 E-value=0.0047 Score=45.29 Aligned_cols=26 Identities=19% Similarity=0.192 Sum_probs=23.0
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
...|.|.|+.|+||||+++.+...+.
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999988753
No 444
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.01 E-value=0.0059 Score=46.27 Aligned_cols=23 Identities=22% Similarity=0.240 Sum_probs=20.8
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.++.|.|++|+|||||++.+...
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTT
T ss_pred CeEEEECCCCCcHHHHHHHhccc
Confidence 58899999999999999998765
No 445
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.01 E-value=0.0043 Score=43.57 Aligned_cols=24 Identities=17% Similarity=0.342 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.-.|.|.|.+|+|||||+..+...
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 467899999999999999998764
No 446
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=96.01 E-value=0.0076 Score=44.56 Aligned_cols=24 Identities=17% Similarity=0.393 Sum_probs=21.8
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
...|.+.|.+|+|||||+..+...
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTS
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 578999999999999999999875
No 447
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=96.00 E-value=0.005 Score=46.08 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
.++|.|.|.||+||||+|..++..+.
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La 27 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALA 27 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHH
Confidence 36788899999999999998887743
No 448
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.00 E-value=0.0035 Score=44.04 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.-.|.|+|.+|+|||||+..+.+.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999998765
No 449
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.00 E-value=0.0047 Score=47.42 Aligned_cols=24 Identities=13% Similarity=0.040 Sum_probs=21.2
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
.++.|+|++|+|||||+.+++...
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~ 52 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSY 52 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999888774
No 450
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.98 E-value=0.0071 Score=48.37 Aligned_cols=35 Identities=23% Similarity=0.457 Sum_probs=26.3
Q ss_pred HHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHH
Q 040354 37 EEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 37 ~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
..|...+.-..+ ..++|.|++|+|||||++.+++.
T Consensus 146 ~vld~vl~i~~G---q~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 146 RAINALLTVGRG---QRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp HHHHHHSCCBTT---CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEeeeEEecCC---CEEEEECCCCCCHHHHHHHHhcc
Confidence 344445433332 59999999999999999999886
No 451
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.98 E-value=0.0031 Score=44.38 Aligned_cols=23 Identities=35% Similarity=0.523 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFN 73 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~ 73 (172)
.-.+.|.|.+|+|||||+..+.+
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEEEECCCCCCHHHHHHHHHh
Confidence 56789999999999999998853
No 452
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=95.98 E-value=0.0058 Score=44.40 Aligned_cols=29 Identities=10% Similarity=0.084 Sum_probs=24.7
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhccc
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKITRRF 79 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f 79 (172)
..+|.|.|+.|+||||+|+.+...+.-.|
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg~~~ 42 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELGIHF 42 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTCEE
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcCCcE
Confidence 36899999999999999999998765443
No 453
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.98 E-value=0.0038 Score=45.56 Aligned_cols=27 Identities=15% Similarity=0.107 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhc
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKITR 77 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~~ 77 (172)
...|.|.|+.|+||||+++.+...+..
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~ 51 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQE 51 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 368999999999999999999988543
No 454
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.97 E-value=0.0044 Score=43.69 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.-.|.|.|.+|+|||||+..+.+.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 467899999999999999998875
No 455
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.96 E-value=0.0056 Score=44.47 Aligned_cols=24 Identities=17% Similarity=0.343 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
...|+|+|.+|+|||||+..+...
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCCHHHHHHHHcCC
Confidence 578999999999999999999875
No 456
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=95.95 E-value=0.0067 Score=43.43 Aligned_cols=27 Identities=15% Similarity=0.449 Sum_probs=23.1
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhcc
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKITRR 78 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~~~~ 78 (172)
..|.|-|.-|+||||+++.+...+...
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~ 29 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKD 29 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCC
Confidence 578899999999999999999886543
No 457
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.94 E-value=0.0045 Score=48.23 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=21.2
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
.+++|.|++|+|||||++.+....
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CEEEEECCCCccHHHHHHHHhccc
Confidence 588999999999999999988653
No 458
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=95.93 E-value=0.0057 Score=44.35 Aligned_cols=24 Identities=29% Similarity=0.678 Sum_probs=20.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhc
Q 040354 54 LGISGSGDIGKITIAGAIFNKITR 77 (172)
Q Consensus 54 i~I~G~~GiGKTtLa~~~~~~~~~ 77 (172)
|.+.|.||+||||+|..+...+..
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~ 26 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMAS 26 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTT
T ss_pred EEEecCCCCCHHHHHHHHHHHHHH
Confidence 556999999999999999887543
No 459
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.91 E-value=0.0046 Score=45.95 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
...++|.|.+|+|||||...+...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 367899999999999999999865
No 460
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.91 E-value=0.0051 Score=43.44 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
...|.|+|.+|+|||||+..+...
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 467899999999999999998865
No 461
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.90 E-value=0.0039 Score=47.27 Aligned_cols=25 Identities=24% Similarity=0.205 Sum_probs=22.0
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
..++.++|++|+||||++..++...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5788999999999999999988764
No 462
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.89 E-value=0.0056 Score=44.14 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=22.4
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
..|.+.|+.|+||||+++.+...+.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5889999999999999999998853
No 463
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.89 E-value=0.007 Score=48.22 Aligned_cols=26 Identities=19% Similarity=0.000 Sum_probs=22.9
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
..++.++|++|+||||++..++..+.
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~ 123 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYK 123 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999888754
No 464
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.88 E-value=0.005 Score=43.54 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
...|.+.|.+|+|||||+..+...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcC
Confidence 357899999999999999998874
No 465
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.87 E-value=0.0052 Score=42.82 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.-.+.+.|.+|+|||||+..+.+.
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 357899999999999999999875
No 466
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.87 E-value=0.0063 Score=42.40 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=21.6
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
...|.|+|.+|+|||||+..+.+.
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 678999999999999999998765
No 467
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=95.86 E-value=0.0052 Score=43.49 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.--+.|.|.+|+|||||+..+.+.
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999998865
No 468
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.86 E-value=0.005 Score=44.21 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCchHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFN 73 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~ 73 (172)
.--|.|.|.+|+|||||+..+..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 45689999999999999998874
No 469
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.84 E-value=0.0037 Score=43.25 Aligned_cols=24 Identities=25% Similarity=0.238 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
...+.+.|.+|+|||||+..+.+.
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 478899999999999999998764
No 470
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.83 E-value=0.0052 Score=42.61 Aligned_cols=24 Identities=29% Similarity=0.177 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
...+.+.|.+|+|||||...+.+.
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 478899999999999999999853
No 471
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.83 E-value=0.0054 Score=43.24 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.-.|.|.|.+|+|||||+..+.+.
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhhC
Confidence 467899999999999999998764
No 472
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.83 E-value=0.0053 Score=43.00 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.-.|.|+|.+|+|||||+..+.+.
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 467889999999999999988754
No 473
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.82 E-value=0.0052 Score=43.28 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.-.|.|.|.+|+|||||+..+.+.
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC-
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 467899999999999999998754
No 474
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.82 E-value=0.0029 Score=43.61 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=10.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.-.+.|+|.+|+|||||+..+.+.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEECCCCC------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 467899999999999999988754
No 475
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.82 E-value=0.004 Score=43.02 Aligned_cols=24 Identities=29% Similarity=0.177 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.-.+.+.|.+|+|||||...+.+.
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 367899999999999999999864
No 476
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=95.81 E-value=0.0069 Score=43.20 Aligned_cols=24 Identities=17% Similarity=0.086 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
..+..++|.+|+|||++|......
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHH
Confidence 357889999999999999876544
No 477
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.81 E-value=0.0057 Score=43.06 Aligned_cols=24 Identities=29% Similarity=0.271 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
...|.|.|.+|+|||||+..+...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457899999999999999998875
No 478
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.81 E-value=0.0035 Score=43.15 Aligned_cols=23 Identities=26% Similarity=0.147 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCchHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFN 73 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~ 73 (172)
...+.+.|.+|+|||||+..+..
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 47889999999999999988874
No 479
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.80 E-value=0.0057 Score=49.50 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=21.8
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
.+++|.|+.|+|||||++.++.-.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC
Confidence 589999999999999999998864
No 480
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.80 E-value=0.0043 Score=43.53 Aligned_cols=24 Identities=25% Similarity=0.355 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.--+.+.|.+|+|||||++.+.+.
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 467899999999999999877664
No 481
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=95.79 E-value=0.0074 Score=43.21 Aligned_cols=25 Identities=24% Similarity=0.232 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
..+|+|+|++|+||+|+|..+.+.+
T Consensus 11 ~~II~itGk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 11 RLVLLFSGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCChHHHHHHHHHHc
Confidence 5899999999999999998887644
No 482
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=95.79 E-value=0.0071 Score=43.74 Aligned_cols=27 Identities=22% Similarity=0.256 Sum_probs=23.8
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhc
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKITR 77 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~~ 77 (172)
...|.+.|+.|+||||+++.+...+..
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 368999999999999999999998654
No 483
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.78 E-value=0.0054 Score=50.35 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=20.7
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 040354 52 CKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.+++|+|+.|+|||||++.+...
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 69999999999999999988763
No 484
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.78 E-value=0.0037 Score=49.81 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 040354 53 KLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 53 ~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.++|+|++|+|||||++.++..
T Consensus 44 ~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 44 NILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEEECSTTSSSHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 3999999999999999999875
No 485
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.78 E-value=0.0061 Score=43.49 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.--|.|.|.+|+|||||+..+.+.
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356889999999999999998875
No 486
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.76 E-value=0.0056 Score=43.64 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.-.|.|+|.+|+|||||+..+.+.
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC-
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 467899999999999999998754
No 487
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.75 E-value=0.0054 Score=42.94 Aligned_cols=23 Identities=22% Similarity=0.145 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCchHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFN 73 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~ 73 (172)
.-.+.|.|.+|+|||||+..+..
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCS
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 46799999999999999998865
No 488
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.73 E-value=0.0072 Score=43.09 Aligned_cols=26 Identities=23% Similarity=0.139 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
..+..|+|+.|+||||+..++.--+.
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 37889999999999999998876643
No 489
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.70 E-value=0.0054 Score=44.16 Aligned_cols=24 Identities=17% Similarity=0.272 Sum_probs=21.6
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
...|.|+|.+|+|||||+..+.+.
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 578999999999999999998765
No 490
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.69 E-value=0.0039 Score=50.85 Aligned_cols=62 Identities=18% Similarity=0.151 Sum_probs=40.7
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhccccCc------------C--------------cc-cHHHHHHHhCCCeeEEEEe
Q 040354 52 CKLGISGSGDIGKITIAGAIFNKITRRFEEF------------P--------------NI-GLNFQSKRLTRKKLLIVFD 104 (172)
Q Consensus 52 ~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~------------~--------------~~-~~~~~~~~l~~~~~LlvlD 104 (172)
..++|.|+.|+||||+++.+...+...-... . .. ..+.++..++..+-.++++
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iivg 340 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIVG 340 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEEeC
Confidence 4699999999999999999887642210000 0 01 2355666666666677888
Q ss_pred cCCCHHhHH
Q 040354 105 DVHHPRQID 113 (172)
Q Consensus 105 dv~~~~~~~ 113 (172)
++...+.+.
T Consensus 341 Eir~~E~~~ 349 (511)
T 2oap_1 341 EVRGREAQT 349 (511)
T ss_dssp CCCSTHHHH
T ss_pred CcCHHHHHH
Confidence 887655443
No 491
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.69 E-value=0.0061 Score=42.55 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.-.|.|.|.+|+|||||+..+.+.
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC-
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999998754
No 492
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.69 E-value=0.0078 Score=45.71 Aligned_cols=24 Identities=21% Similarity=0.448 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
...++|+|.+|+|||||...+...
T Consensus 10 ~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 10 VGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 689999999999999999999875
No 493
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.68 E-value=0.0061 Score=49.77 Aligned_cols=20 Identities=20% Similarity=0.268 Sum_probs=0.0
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 040354 53 KLGISGSGDIGKITIAGAIF 72 (172)
Q Consensus 53 ~i~I~G~~GiGKTtLa~~~~ 72 (172)
++.|.|++|+|||||++.++
T Consensus 41 ~~~l~G~nGsGKSTL~~~~l 60 (525)
T 1tf7_A 41 STLVSGTSGTGKTLFSIQFL 60 (525)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
No 494
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.65 E-value=0.012 Score=49.34 Aligned_cols=35 Identities=23% Similarity=0.125 Sum_probs=23.7
Q ss_pred hHHHHHHHhcCCCCCCeeEEEEEcCCCchHHHHHHHHHHH
Q 040354 35 RTEEIESVLGVGSTMNICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 35 ~~~~l~~~l~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
..+.+...|.. ..+..|+||||+|||+.+.++..+
T Consensus 194 Q~~AV~~al~~-----~~~~lI~GPPGTGKT~ti~~~I~~ 228 (646)
T 4b3f_X 194 QKEAVLFALSQ-----KELAIIHGPPGTGKTTTVVEIILQ 228 (646)
T ss_dssp HHHHHHHHHHC-----SSEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-----CCceEEECCCCCCHHHHHHHHHHH
Confidence 34455555542 247889999999999776655554
No 495
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=95.64 E-value=0.0074 Score=43.23 Aligned_cols=24 Identities=17% Similarity=0.372 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.-.|.|.|.+|+|||||+..+.+.
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999998875
No 496
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.63 E-value=0.0069 Score=42.99 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.-.|.|+|.+|+|||||+..+...
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 467899999999999999988764
No 497
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.63 E-value=0.0081 Score=44.16 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
...|+|+|.+|+|||||...+...
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTS
T ss_pred ceEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999865
No 498
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=95.62 E-value=0.0081 Score=46.60 Aligned_cols=26 Identities=19% Similarity=0.403 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHh
Q 040354 51 ICKLGISGSGDIGKITIAGAIFNKIT 76 (172)
Q Consensus 51 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 76 (172)
.+++.+.|.||+||||+|..++....
T Consensus 18 ~~i~~~~gkGGvGKTt~a~~lA~~la 43 (348)
T 3io3_A 18 LKWIFVGGKGGVGKTTTSSSVAVQLA 43 (348)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHH
Confidence 57999999999999999988877654
No 499
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.61 E-value=0.0074 Score=47.15 Aligned_cols=41 Identities=27% Similarity=0.215 Sum_probs=28.8
Q ss_pred chHHHHHHHhc-CCCCCCeeEEEEEcCCCchHHHHHHHHHHHH
Q 040354 34 SRTEEIESVLG-VGSTMNICKLGISGSGDIGKITIAGAIFNKI 75 (172)
Q Consensus 34 ~~~~~l~~~l~-~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~ 75 (172)
.-...|...|. .+-.. ..++.|+|++|+||||||..++...
T Consensus 57 TG~~~LD~~Lg~GGl~~-G~li~I~G~pGsGKTtlal~la~~~ 98 (366)
T 1xp8_A 57 TGSLSLDLALGVGGIPR-GRITEIYGPESGGKTTLALAIVAQA 98 (366)
T ss_dssp CSCHHHHHHTSSSSEET-TSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHhCCCCccC-CcEEEEEcCCCCChHHHHHHHHHHH
Confidence 33555666564 12111 3688999999999999999988763
No 500
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.60 E-value=0.0046 Score=49.16 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 040354 53 KLGISGSGDIGKITIAGAIFNK 74 (172)
Q Consensus 53 ~i~I~G~~GiGKTtLa~~~~~~ 74 (172)
.++|+|++|+|||||++.++..
T Consensus 33 ~I~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 33 TLMVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp EEEEECCTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 3699999999999999999865
Done!