Query 040356
Match_columns 226
No_of_seqs 137 out of 283
Neff 3.1
Searched_HMMs 46136
Date Fri Mar 29 07:38:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040356.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040356hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14547 Hydrophob_seed: Hydro 100.0 1.7E-34 3.7E-39 220.7 4.6 85 138-223 1-85 (85)
2 cd01958 HPS_like HPS_like: Hyd 100.0 1.5E-34 3.2E-39 221.8 1.5 84 137-222 2-85 (85)
3 smart00499 AAI Plant lipid tra 97.1 0.00022 4.7E-09 49.1 1.2 76 139-222 1-79 (79)
4 PF14368 LTP_2: Probable lipid 97.0 0.0001 2.2E-09 54.1 -1.4 56 163-222 40-96 (96)
5 cd04660 nsLTP_like nsLTP_like: 96.9 0.0002 4.2E-09 52.3 -0.1 70 142-222 4-73 (73)
6 cd01959 nsLTP2 nsLTP2: Non-spe 96.9 0.0002 4.4E-09 52.5 -0.4 63 143-218 3-65 (66)
7 cd00010 AAI_LTSS AAI_LTSS: Alp 94.6 0.011 2.4E-07 41.0 0.3 60 147-213 2-62 (63)
8 PF00234 Tryp_alpha_amyl: Prot 94.1 0.002 4.3E-08 47.3 -4.6 68 144-222 13-90 (90)
9 cd01960 nsLTP1 nsLTP1: Non-spe 93.2 0.024 5.3E-07 42.2 -0.1 68 143-217 7-79 (89)
10 PF07850 Renin_r: Renin recept 46.3 6.6 0.00014 31.5 0.0 21 4-24 55-75 (98)
11 PF07172 GRP: Glycine rich pro 34.7 37 0.0008 26.7 2.5 17 10-26 8-24 (95)
12 PF15240 Pro-rich: Proline-ric 31.0 25 0.00055 31.0 1.2 17 10-26 2-18 (179)
13 PF11587 Prion_bPrPp: Major pr 29.3 56 0.0012 21.4 2.3 23 1-23 1-23 (29)
14 PRK00442 tatA twin arginine tr 25.6 59 0.0013 26.0 2.3 15 1-15 1-15 (92)
15 PF11446 DUF2897: Protein of u 21.0 72 0.0016 23.1 1.8 18 7-24 4-21 (55)
No 1
>PF14547 Hydrophob_seed: Hydrophobic seed protein
Probab=100.00 E-value=1.7e-34 Score=220.74 Aligned_cols=85 Identities=52% Similarity=1.117 Sum_probs=83.1
Q ss_pred CCCccccCccccccccccccccccCCCCCCCCchhhcCCcccccchhhhHHhhhccCceeccccchhhHHhhhhcCCCCC
Q 040356 138 TCPINALKLSACVDVLGGLIQIGLGDSAKEKCCPLLHGLVDLDAAICLCTAIRIKAPNLINLLVPISLQVLVNDCGKYPP 217 (226)
Q Consensus 138 ~CP~DaLKLgvCanVLgGLv~~~lG~Pp~~~CCpLI~GLaDldAAvCLCtAIKAnvLGlInlniPi~L~lLLN~CGK~vP 217 (226)
+||+|++||++|+||| ||+++.+|++.+++||++|+||+|+|||+|||+|||+|+||+||+|||+++++|+|.|||++|
T Consensus 1 ~CP~d~lkLgvC~~vL-~l~~~~~g~~~~~~CC~li~gL~d~~AA~CLC~aika~vlg~i~~~ipv~l~~lln~CGk~~p 79 (85)
T PF14547_consen 1 TCPRDALKLGVCANVL-GLVNLVIGNPPRQPCCSLIAGLADLDAAVCLCTAIKANVLGLINVNIPVALNLLLNACGKTVP 79 (85)
T ss_pred CCCCcchhhhhhhhhh-hhhccccCCCCCCCcChHHhCcccchHHHHHHHHHhhhcccccccccccHHHHHHHHhCCcCc
Confidence 6999999999999999 799999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCC
Q 040356 218 AGFQCP 223 (226)
Q Consensus 218 ~GF~C~ 223 (226)
+||+|+
T Consensus 80 ~gf~C~ 85 (85)
T PF14547_consen 80 SGFTCP 85 (85)
T ss_pred CCCcCC
Confidence 999996
No 2
>cd01958 HPS_like HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins. In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset
Probab=100.00 E-value=1.5e-34 Score=221.77 Aligned_cols=84 Identities=51% Similarity=1.049 Sum_probs=81.6
Q ss_pred CCCCccccCccccccccccccccccCCCCCCCCchhhcCCcccccchhhhHHhhhccCceeccccchhhHHhhhhcCCCC
Q 040356 137 KTCPINALKLSACVDVLGGLIQIGLGDSAKEKCCPLLHGLVDLDAAICLCTAIRIKAPNLINLLVPISLQVLVNDCGKYP 216 (226)
Q Consensus 137 ~~CP~DaLKLgvCanVLgGLv~~~lG~Pp~~~CCpLI~GLaDldAAvCLCtAIKAnvLGlInlniPi~L~lLLN~CGK~v 216 (226)
++||||+||||+|+|||| +++..+|++++++||++|+||+|+|||+|||||||+|+|| |++|+|++|++|+|.|||++
T Consensus 2 ~~CP~dalkLgvCanvL~-l~~~~~g~~~~~~CC~ll~GL~dldAA~CLCtaikan~lg-i~~~~pv~l~llln~CGk~~ 79 (85)
T cd01958 2 PTCPRDALKLGVCANVLG-LSLLLLGTPAVQPCCPLIGGLADLDAAVCLCTAIKANILG-ISINIPVALSLLLNSCGRNV 79 (85)
T ss_pred CCCCcchHHhchhHhhhh-ccccccCCCccchHHHHHcCchhhheeeeeeeeeeccccC-cccccChhHHHHHHHHcCcC
Confidence 689999999999999995 8888899999999999999999999999999999999999 99999999999999999999
Q ss_pred CCCCcC
Q 040356 217 PAGFQC 222 (226)
Q Consensus 217 P~GF~C 222 (226)
|+||+|
T Consensus 80 P~gf~C 85 (85)
T cd01958 80 PPGFTC 85 (85)
T ss_pred CCCCcC
Confidence 999998
No 3
>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family.
Probab=97.08 E-value=0.00022 Score=49.09 Aligned_cols=76 Identities=30% Similarity=0.630 Sum_probs=50.3
Q ss_pred CCccccCccccccccccccccccCCCCCCCCchhhcCCcccccchhhhHHhhhccCceec---cccchhhHHhhhhcCCC
Q 040356 139 CPINALKLSACVDVLGGLIQIGLGDSAKEKCCPLLHGLVDLDAAICLCTAIRIKAPNLIN---LLVPISLQVLVNDCGKY 215 (226)
Q Consensus 139 CP~DaLKLgvCanVLgGLv~~~lG~Pp~~~CCpLI~GLaDldAAvCLCtAIKAnvLGlIn---lniPi~L~lLLN~CGK~ 215 (226)
|.....++..|.+.+.+.. ....+.++||..++++. .+.|+|.+|+..+.+++. ++. .....|.+.||..
T Consensus 1 C~~~~~~~~~c~~~~~~~~---~~~~p~~~CC~~l~~~~---~~~C~C~~~~~~~~~~~~~~~~~~-~~a~~lp~~C~~~ 73 (79)
T smart00499 1 CGQVLLQLAPCLSYLTGGS---PGAPPSQQCCSQLRGLN---SAQCRCLALRAAVLGILEIPGVNA-QNAASLPSACGVP 73 (79)
T ss_pred ChhhhhhHHhhHHHHcCCC---CCCCCchHHHHHHHHhc---ccCCcchhhhcccccccchhhhhH-HHHHhhHHhcCCC
Confidence 3344455557777663210 12346688999999887 778999999988776321 233 3445578899998
Q ss_pred CCCCCcC
Q 040356 216 PPAGFQC 222 (226)
Q Consensus 216 vP~GF~C 222 (226)
.+. +.|
T Consensus 74 ~~~-~~C 79 (79)
T smart00499 74 PPY-TDC 79 (79)
T ss_pred CCC-CCC
Confidence 775 554
No 4
>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A.
Probab=96.97 E-value=0.0001 Score=54.11 Aligned_cols=56 Identities=27% Similarity=0.621 Sum_probs=34.7
Q ss_pred CCCCCCCchhhcCCcccccchhhhHHhhhcc-CceeccccchhhHHhhhhcCCCCCCCCcC
Q 040356 163 DSAKEKCCPLLHGLVDLDAAICLCTAIRIKA-PNLINLLVPISLQVLVNDCGKYPPAGFQC 222 (226)
Q Consensus 163 ~Pp~~~CCpLI~GLaDldAAvCLCtAIKAnv-LGlInlniPi~L~lLLN~CGK~vP~GF~C 222 (226)
..+...||..++.+++ ....|||..++... .+ +++|...++. |...||...+. ++|
T Consensus 40 ~~Ps~~CC~~l~~~~~-~~~~ClC~~~~~~~~~~-~~in~~~a~~-Lp~~Cg~~~~~-~~C 96 (96)
T PF14368_consen 40 PAPSAACCSALKSVVQ-ADPPCLCQLLNSPGAPG-FGINVTRALA-LPAACGVPVPP-SKC 96 (96)
T ss_dssp ----HHHHHHHCC-----HCCHHHCCCC-CCHCH-HCCTCHHHHH-HHHHCTSS-S-----
T ss_pred CCCCHHHHHHHHHhcc-CCCCCHHHhcCcccccc-CCcCHHHHHH-HHHHcCCCCCC-CCC
Confidence 4577889999999976 45899999999877 55 5666656664 67899999998 887
No 5
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
Probab=96.94 E-value=0.0002 Score=52.29 Aligned_cols=70 Identities=23% Similarity=0.399 Sum_probs=47.0
Q ss_pred cccCccccccccccccccccCCCCCCCCchhhcCCcccccchhhhHHhhhccCceeccccchhhHHhhhhcCCCCCCCCc
Q 040356 142 NALKLSACVDVLGGLIQIGLGDSAKEKCCPLLHGLVDLDAAICLCTAIRIKAPNLINLLVPISLQVLVNDCGKYPPAGFQ 221 (226)
Q Consensus 142 DaLKLgvCanVLgGLv~~~lG~Pp~~~CCpLI~GLaDldAAvCLCtAIKAnvLGlInlniPi~L~lLLN~CGK~vP~GF~ 221 (226)
|...|..|...+.|- .-...+.+.||+-|+++ |. .|+|..++++.+.+| |...+. .|.+.||..++. |+
T Consensus 4 ~~~~L~~C~~yl~~~---~~~~~Ps~~CC~~vk~~---~~-~C~C~~~~~~~~~~i--~~~~a~-~Lp~~Cgv~~p~-~~ 72 (73)
T cd04660 4 DLDLLAECQPYVTGP---NPPPPPSRECCAALRRA---DL-PCLCRYKTSLVLQII--DPDKAV-YLPAKCGLPLPP-SS 72 (73)
T ss_pred CHHHHHHHHHHHcCC---CCCCCCCHHHHHHHHcC---Cc-CCEeeccCCCccccc--CHHHHH-HHHHHcCCCCCC-CC
Confidence 344667787766310 00123567899999974 32 399999998766634 443444 578899999999 98
Q ss_pred C
Q 040356 222 C 222 (226)
Q Consensus 222 C 222 (226)
|
T Consensus 73 C 73 (73)
T cd04660 73 C 73 (73)
T ss_pred C
Confidence 8
No 6
>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp
Probab=96.88 E-value=0.0002 Score=52.50 Aligned_cols=63 Identities=22% Similarity=0.462 Sum_probs=46.9
Q ss_pred ccCccccccccccccccccCCCCCCCCchhhcCCcccccchhhhHHhhhccCceeccccchhhHHhhhhcCCCCCC
Q 040356 143 ALKLSACVDVLGGLIQIGLGDSAKEKCCPLLHGLVDLDAAICLCTAIRIKAPNLINLLVPISLQVLVNDCGKYPPA 218 (226)
Q Consensus 143 aLKLgvCanVLgGLv~~~lG~Pp~~~CCpLI~GLaDldAAvCLCtAIKAnvLGlInlniPi~L~lLLN~CGK~vP~ 218 (226)
..+|..|...+. .|.+++.+||..|+. +..|||..+|...|+ ..||.+.+++ |.+.||..+|.
T Consensus 3 ~~~L~~C~~ai~------~~~~Ps~~CC~~Lk~-----~~~CLC~y~~~p~l~-~~i~~~~A~~-l~~~Cgv~~P~ 65 (66)
T cd01959 3 PTQLSPCLPAIL------GGSPPSAACCAKLKE-----QQSCLCQYAKNPSLK-QYVNSPNARK-VLAACGVPYPN 65 (66)
T ss_pred hhhcccCHHHHh------CCCCCCHHHHHHHhc-----CCCCeeeeecCccHH-hhcCcHHHHH-HHHHcCCCCCC
Confidence 457888997653 356788899999995 337999999876666 3456666776 66799998863
No 7
>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.
Probab=94.60 E-value=0.011 Score=40.96 Aligned_cols=60 Identities=27% Similarity=0.561 Sum_probs=37.7
Q ss_pred cccccccccccccccCCCCCCCCchhhcCCcccccchhhhHHhhhccCceecc-ccchhhHHhhhhcC
Q 040356 147 SACVDVLGGLIQIGLGDSAKEKCCPLLHGLVDLDAAICLCTAIRIKAPNLINL-LVPISLQVLVNDCG 213 (226)
Q Consensus 147 gvCanVLgGLv~~~lG~Pp~~~CCpLI~GLaDldAAvCLCtAIKAnvLGlInl-niPi~L~lLLN~CG 213 (226)
..|.+.+.| -+..+...||.-++.+.+. ...|||..++........+ |. .....|.+.||
T Consensus 2 ~~C~~y~~~-----~~~~Ps~~CC~~l~~~~~~-~~~ClC~~~~~~~~~~~~~~~~-~~a~~LP~~Cg 62 (63)
T cd00010 2 APCLSYLTG-----GATAPPSDCCSGLKSVVKS-DPKCLCAALNGPGASLLGLKNA-TRALALPAACG 62 (63)
T ss_pred cchHHHHcC-----CCCCCChHHHHHHHHHHhc-ChhhHHHHHcCccccccCcccH-HHHHhchHhcC
Confidence 356666532 1234678899999988766 4569999999765432112 22 23345667887
No 8
>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]. The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....
Probab=94.08 E-value=0.002 Score=47.26 Aligned_cols=68 Identities=31% Similarity=0.632 Sum_probs=47.1
Q ss_pred cCccccccccccccccccCCCCCCCCchhhcCCcccccchhhhHHhhhccCcee----------ccccchhhHHhhhhcC
Q 040356 144 LKLSACVDVLGGLIQIGLGDSAKEKCCPLLHGLVDLDAAICLCTAIRIKAPNLI----------NLLVPISLQVLVNDCG 213 (226)
Q Consensus 144 LKLgvCanVLgGLv~~~lG~Pp~~~CCpLI~GLaDldAAvCLCtAIKAnvLGlI----------nlniPi~L~lLLN~CG 213 (226)
..|..|...+.|- . ....+.||.-|++| ...|.|.+|+..+.+++ .++.- ....|.+.||
T Consensus 13 ~~l~~c~~~~~~~----~-~~~~~~CC~~L~~l----~~~C~C~~i~~~~~~~~~q~~~~~~~~~~~~~-~a~~LP~~C~ 82 (90)
T PF00234_consen 13 VRLSPCLPYLQGG----C-QQPSQQCCQQLRQL----DPQCRCEAIRQMVRQVIQQQQQGGQEMQIMAQ-RAQNLPSMCN 82 (90)
T ss_dssp SHHHGGHHHHTTS----S-SHHHHHHHHHHHHH----HHHHHHHHHHHHHHHSHHCTSTCSHHHHHHHH-HHHHHHHHTT
T ss_pred ccccccHHHHhcc----c-ccchHHHhHHHHHH----hHHhhCHHHHHHHHhhhhhhhhhHHHHHHHHH-HHHHHHHHCC
Confidence 4567777666421 1 13456799999988 88999999998887721 34433 4445888999
Q ss_pred CCCCCCCcC
Q 040356 214 KYPPAGFQC 222 (226)
Q Consensus 214 K~vP~GF~C 222 (226)
..++. |.|
T Consensus 83 v~~~~-~~C 90 (90)
T PF00234_consen 83 VSPPY-TDC 90 (90)
T ss_dssp SSSSS-S-G
T ss_pred CCCCC-CCC
Confidence 99887 665
No 9
>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.
Probab=93.19 E-value=0.024 Score=42.25 Aligned_cols=68 Identities=25% Similarity=0.443 Sum_probs=44.4
Q ss_pred ccCccccccccccccccccCCCCCCCCchhhcCCccc----ccchhhhHHhhhccCceec-cccchhhHHhhhhcCCCCC
Q 040356 143 ALKLSACVDVLGGLIQIGLGDSAKEKCCPLLHGLVDL----DAAICLCTAIRIKAPNLIN-LLVPISLQVLVNDCGKYPP 217 (226)
Q Consensus 143 aLKLgvCanVLgGLv~~~lG~Pp~~~CCpLI~GLaDl----dAAvCLCtAIKAnvLGlIn-lniPi~L~lLLN~CGK~vP 217 (226)
..+|.-|.+.+.| -+..+...||.-++.|.+. +...|+|.-++..+.+ +. ||...+++ |-..||-..+
T Consensus 7 ~~~l~~C~~y~~g-----~~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~~~~-~~~i~~~~a~~-LP~~C~v~~~ 79 (89)
T cd01960 7 TSLLAPCLGYLTG-----GGPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAAG-ISGLNPGRAAG-LPGKCGVSIP 79 (89)
T ss_pred HhhHHhHHHHHhC-----CCCCCChHHhhhhHHHhhccCCCCchhhhhhcccccccc-cCCCCHHHHHh-ChHhcccCCC
Confidence 4567778877643 2234678899999998654 2345667667776666 33 55445554 6779998754
No 10
>PF07850 Renin_r: Renin receptor-like protein; InterPro: IPR012493 The sequences featured in this family are similar to a region of the human renin receptor (Q8NG15 from SWISSPROT) that bears a putative transmembrane spanning segment []. The renin receptor is involved in intracellular signal transduction by the activation of the ERK1/ERK2 pathway, and it also serves to increase the efficiency of angiotensinogen cleavage by receptor-bound renin, therefore facilitating angiotensin II generation and action on a cell surface []. ; GO: 0004872 receptor activity, 0016021 integral to membrane; PDB: 3LC8_A 3LBS_A.
Probab=46.32 E-value=6.6 Score=31.53 Aligned_cols=21 Identities=19% Similarity=0.308 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHhHhhhhc
Q 040356 4 YQLTSFLIVLLNSGALLSSLA 24 (226)
Q Consensus 4 ~~~~~~~~~ll~lg~l~~~~a 24 (226)
||+..||.|+|.+++++++|+
T Consensus 55 FnIiLW~~v~l~~all~i~~~ 75 (98)
T PF07850_consen 55 FNIILWFSVVLALALLAICYA 75 (98)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999886
No 11
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=34.72 E-value=37 Score=26.71 Aligned_cols=17 Identities=35% Similarity=0.294 Sum_probs=9.5
Q ss_pred HHHHHHHHhHhhhhcCC
Q 040356 10 LIVLLNSGALLSSLACD 26 (226)
Q Consensus 10 ~~~ll~lg~l~~~~a~~ 26 (226)
||.||+..+||+|-+..
T Consensus 8 lL~l~LA~lLlisSeva 24 (95)
T PF07172_consen 8 LLGLLLAALLLISSEVA 24 (95)
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 44444446677776554
No 12
>PF15240 Pro-rich: Proline-rich
Probab=30.99 E-value=25 Score=31.00 Aligned_cols=17 Identities=41% Similarity=0.368 Sum_probs=13.8
Q ss_pred HHHHHHHHhHhhhhcCC
Q 040356 10 LIVLLNSGALLSSLACD 26 (226)
Q Consensus 10 ~~~ll~lg~l~~~~a~~ 26 (226)
|||||-.++|+.|.|=+
T Consensus 2 LlVLLSvALLALSSAQ~ 18 (179)
T PF15240_consen 2 LLVLLSVALLALSSAQS 18 (179)
T ss_pred hhHHHHHHHHHhhhccc
Confidence 78888888888887754
No 13
>PF11587 Prion_bPrPp: Major prion protein bPrPp - N terminal; PDB: 1SKH_A.
Probab=29.35 E-value=56 Score=21.36 Aligned_cols=23 Identities=26% Similarity=0.242 Sum_probs=14.5
Q ss_pred CcchhhhHHHHHHHHHHhHhhhh
Q 040356 1 MGKYQLTSFLIVLLNSGALLSSL 23 (226)
Q Consensus 1 m~k~~~~~~~~~ll~lg~l~~~~ 23 (226)
|+|+.+.-|+++|+...--=++|
T Consensus 1 M~k~~lgcWilvLfvatwsdvgl 23 (29)
T PF11587_consen 1 MVKSHLGCWILVLFVATWSDVGL 23 (29)
T ss_dssp --TTTTTTHHHHHHHHHHHHHTT
T ss_pred CccccccHHHHHHHHHHHhhhcc
Confidence 89999998888877654443444
No 14
>PRK00442 tatA twin arginine translocase protein A; Provisional
Probab=25.61 E-value=59 Score=25.97 Aligned_cols=15 Identities=20% Similarity=0.671 Sum_probs=9.9
Q ss_pred CcchhhhHHHHHHHH
Q 040356 1 MGKYQLTSFLIVLLN 15 (226)
Q Consensus 1 m~k~~~~~~~~~ll~ 15 (226)
||-++..-|+|||+.
T Consensus 1 Mg~~g~~elliIlvI 15 (92)
T PRK00442 1 MGIFDWKHWIVILVV 15 (92)
T ss_pred CCCccHHHHHHHHHH
Confidence 887877766665443
No 15
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=20.98 E-value=72 Score=23.08 Aligned_cols=18 Identities=22% Similarity=0.643 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHhHhhhhc
Q 040356 7 TSFLIVLLNSGALLSSLA 24 (226)
Q Consensus 7 ~~~~~~ll~lg~l~~~~a 24 (226)
.-|+||++.||.++..+|
T Consensus 4 ~~wlIIviVlgvIigNia 21 (55)
T PF11446_consen 4 NPWLIIVIVLGVIIGNIA 21 (55)
T ss_pred hhhHHHHHHHHHHHhHHH
Confidence 458999999999888776
Done!