Query 040357
Match_columns 144
No_of_seqs 112 out of 188
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 07:39:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040357.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040357hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01277 Oleosin: Oleosin; In 100.0 1.1E-52 2.4E-57 317.9 16.0 117 19-135 1-117 (118)
2 PF01277 Oleosin: Oleosin; In 94.6 1.6 3.4E-05 33.6 12.6 98 35-137 10-112 (118)
3 PF11990 DUF3487: Protein of u 93.6 0.33 7.3E-06 37.0 6.7 49 44-103 31-80 (121)
4 PF08006 DUF1700: Protein of u 92.2 4.5 9.8E-05 31.4 11.5 24 42-66 101-124 (181)
5 PF04156 IncA: IncA protein; 90.0 3.8 8.3E-05 31.7 9.1 15 57-71 33-47 (191)
6 PRK09459 pspG phage shock prot 87.4 6.2 0.00013 28.5 7.9 26 35-60 12-37 (76)
7 PF07332 DUF1469: Protein of u 84.8 12 0.00027 26.9 10.1 17 87-103 84-100 (121)
8 PF07178 TraL: TraL protein; 83.9 4.2 9.1E-05 29.2 5.8 36 72-107 27-63 (95)
9 PRK10801 colicin uptake protei 82.2 16 0.00034 30.2 9.2 73 44-129 139-214 (227)
10 TIGR02797 exbB tonB-system ene 78.0 21 0.00045 29.0 8.5 70 44-126 134-206 (211)
11 PF09583 Phageshock_PspG: Phag 77.7 17 0.00038 25.5 6.9 26 35-60 12-37 (65)
12 PRK10414 biopolymer transport 77.0 27 0.00058 29.4 9.1 71 44-127 145-218 (244)
13 COG0811 TolQ Biopolymer transp 76.8 36 0.00077 27.7 9.6 72 44-127 134-207 (216)
14 TIGR03750 conj_TIGR03750 conju 76.7 9.6 0.00021 29.0 5.8 32 45-76 29-61 (111)
15 TIGR02796 tolQ TolQ protein. T 76.6 33 0.00072 27.9 9.4 91 20-128 118-212 (215)
16 PF12537 DUF3735: Protein of u 76.2 11 0.00024 25.9 5.6 56 71-132 15-71 (72)
17 PF01618 MotA_ExbB: MotA/TolQ/ 75.7 29 0.00062 25.9 8.2 53 44-102 70-125 (139)
18 TIGR01666 YCCS hypothetical me 72.4 36 0.00078 32.8 9.8 22 44-65 432-453 (704)
19 TIGR01667 YCCS_YHJK integral m 71.0 38 0.00083 32.5 9.6 19 44-62 434-452 (701)
20 PRK15083 PTS system mannitol-s 70.7 15 0.00034 34.4 6.8 38 89-132 326-363 (639)
21 TIGR02975 phageshock_pspG phag 68.4 26 0.00057 24.6 6.0 26 35-60 11-36 (64)
22 PF12597 DUF3767: Protein of u 66.4 17 0.00037 27.5 5.2 64 44-122 45-109 (118)
23 PF12732 YtxH: YtxH-like prote 65.7 27 0.00058 23.6 5.6 12 77-88 3-14 (74)
24 PF06695 Sm_multidrug_ex: Puta 65.6 55 0.0012 24.5 8.2 42 87-133 32-73 (121)
25 PF12270 Cyt_c_ox_IV: Cytochro 63.3 16 0.00034 28.8 4.5 47 58-104 81-135 (137)
26 PRK13707 conjugal transfer pil 62.9 25 0.00054 26.0 5.4 30 77-106 38-68 (101)
27 COG5393 Predicted membrane pro 61.2 80 0.0017 24.9 10.3 23 36-58 50-72 (131)
28 PRK11365 ssuC alkanesulfonate 57.8 80 0.0017 25.8 8.1 10 18-27 40-49 (263)
29 COG4709 Predicted membrane pro 57.5 1.1E+02 0.0025 25.5 10.1 22 78-99 152-173 (195)
30 PF08006 DUF1700: Protein of u 57.0 89 0.0019 24.2 10.9 14 54-67 119-132 (181)
31 PRK01345 heat shock protein Ht 54.9 1.3E+02 0.0029 25.8 9.3 32 94-125 49-80 (317)
32 PRK15100 amino acid ABC transp 54.4 1.1E+02 0.0023 24.3 8.7 9 108-116 116-124 (220)
33 PF05957 DUF883: Bacterial pro 54.1 12 0.00027 26.2 2.4 28 108-135 26-53 (94)
34 PF04156 IncA: IncA protein; 54.1 99 0.0022 23.8 11.3 14 61-74 33-46 (191)
35 PRK04897 heat shock protein Ht 54.1 1E+02 0.0022 26.1 8.4 37 89-125 57-93 (298)
36 PF13829 DUF4191: Domain of un 54.0 36 0.00077 28.8 5.5 41 40-82 36-76 (224)
37 COG4818 Predicted membrane pro 53.8 45 0.00099 25.4 5.5 49 56-104 37-86 (105)
38 PF12153 CAP18_C: LPS binding 51.3 23 0.00049 21.2 2.8 24 110-133 3-26 (28)
39 PF04632 FUSC: Fusaric acid re 50.8 1.9E+02 0.0042 26.1 11.4 49 34-82 43-93 (650)
40 PF10112 Halogen_Hydrol: 5-bro 50.0 1.3E+02 0.0027 23.8 8.1 12 112-123 71-82 (199)
41 COG4709 Predicted membrane pro 49.8 1.6E+02 0.0034 24.8 11.3 17 82-98 160-176 (195)
42 PF05915 DUF872: Eukaryotic pr 49.7 50 0.0011 24.9 5.2 12 93-104 94-105 (115)
43 PF11286 DUF3087: Protein of u 49.2 1E+02 0.0022 25.1 7.2 45 88-133 58-107 (165)
44 COG0600 TauC ABC-type nitrate/ 48.7 1.6E+02 0.0035 24.9 8.6 63 54-116 98-161 (258)
45 PF05957 DUF883: Bacterial pro 47.9 22 0.00047 25.0 2.9 28 108-135 37-64 (94)
46 PRK00523 hypothetical protein; 45.3 95 0.0021 22.2 5.7 21 91-111 25-45 (72)
47 PF02987 LEA_4: Late embryogen 45.0 29 0.00063 21.6 2.8 23 111-133 8-30 (44)
48 COG4425 Predicted membrane pro 44.6 74 0.0016 30.4 6.5 62 39-105 46-107 (588)
49 cd03513 CrtW_beta-carotene-ket 44.0 74 0.0016 26.3 5.8 21 41-61 1-21 (225)
50 TIGR01597 PYST-B Plasmodium yo 43.2 60 0.0013 28.2 5.2 11 91-101 234-244 (255)
51 PRK11026 ftsX cell division AB 42.9 1.6E+02 0.0034 25.2 7.8 25 81-105 284-308 (309)
52 PRK01315 putative inner membra 42.6 86 0.0019 27.7 6.3 31 51-81 217-247 (329)
53 PF01970 TctA: Tripartite tric 42.5 31 0.00066 31.1 3.6 30 41-70 93-122 (419)
54 TIGR02805 exbB2 tonB-system en 41.9 1.3E+02 0.0027 23.8 6.5 57 44-103 70-126 (138)
55 PRK00247 putative inner membra 41.7 2.9E+02 0.0062 25.5 12.5 57 48-113 227-286 (429)
56 TIGR00439 ftsX putative protei 41.3 1.5E+02 0.0032 25.4 7.4 27 79-105 282-308 (309)
57 PRK01844 hypothetical protein; 40.5 1.3E+02 0.0028 21.5 5.8 21 91-111 24-44 (72)
58 TIGR00930 2a30 K-Cl cotranspor 40.2 2.1E+02 0.0045 28.6 9.1 43 65-107 501-543 (953)
59 PRK03072 heat shock protein Ht 40.2 2.3E+02 0.005 24.0 8.9 32 91-122 49-80 (288)
60 PF05145 AmoA: Putative ammoni 39.6 2E+02 0.0044 24.7 8.0 81 39-135 28-108 (318)
61 PF01034 Syndecan: Syndecan do 39.5 3.9 8.4E-05 28.6 -2.0 27 89-117 26-52 (64)
62 TIGR01190 ccmB heme exporter p 39.5 2E+02 0.0042 23.8 7.6 24 59-82 158-181 (211)
63 PRK05812 secD preprotein trans 39.3 1.4E+02 0.0031 27.6 7.5 33 44-76 435-467 (498)
64 PF06120 Phage_HK97_TLTM: Tail 39.2 67 0.0014 28.2 5.1 45 80-133 21-68 (301)
65 PRK10404 hypothetical protein; 39.2 33 0.00073 25.3 2.8 26 109-134 45-70 (101)
66 PF12729 4HB_MCP_1: Four helix 38.6 1.4E+02 0.003 21.0 5.9 23 110-132 76-98 (181)
67 PF13886 DUF4203: Domain of un 38.3 2E+02 0.0043 22.7 8.8 55 21-75 53-122 (210)
68 PF14017 DUF4233: Protein of u 38.1 77 0.0017 23.7 4.6 43 62-104 55-99 (107)
69 PF14019 DUF4235: Protein of u 37.7 76 0.0017 22.2 4.3 23 91-113 18-41 (78)
70 PF01618 MotA_ExbB: MotA/TolQ/ 37.6 36 0.00078 25.4 2.8 19 43-61 102-120 (139)
71 COG0811 TolQ Biopolymer transp 37.2 36 0.00078 27.7 2.9 19 42-60 165-183 (216)
72 COG2148 WcaJ Sugar transferase 36.4 30 0.00065 29.3 2.4 18 57-74 52-69 (226)
73 PRK03982 heat shock protein Ht 36.3 2.6E+02 0.0056 23.4 8.5 33 93-125 49-81 (288)
74 PF12811 BaxI_1: Bax inhibitor 35.7 2.9E+02 0.0064 23.9 9.8 29 42-72 90-119 (274)
75 TIGR01478 STEVOR variant surfa 35.0 2.3E+02 0.005 25.1 7.7 19 31-49 180-198 (295)
76 TIGR03750 conj_TIGR03750 conju 33.7 2.1E+02 0.0046 21.7 7.5 10 94-103 68-77 (111)
77 PF06796 NapE: Periplasmic nit 33.1 1.2E+02 0.0026 20.6 4.5 14 89-102 39-52 (56)
78 PF12420 DUF3671: Protein of u 33.1 1.5E+02 0.0032 21.9 5.4 19 83-101 81-99 (104)
79 PF03379 CcmB: CcmB protein; 33.0 2.6E+02 0.0057 22.5 7.4 47 36-82 132-184 (215)
80 PF03597 CcoS: Cytochrome oxid 32.7 84 0.0018 20.2 3.5 27 86-118 14-40 (45)
81 TIGR02762 TraL_TIGR type IV co 32.6 1.6E+02 0.0035 21.1 5.5 14 93-106 52-65 (95)
82 PF03773 DUF318: Predicted per 32.4 2.7E+02 0.0058 23.5 7.5 21 58-78 89-109 (307)
83 PF04341 DUF485: Protein of un 31.6 1.9E+02 0.0041 20.5 7.5 13 91-103 67-79 (91)
84 PRK13023 bifunctional preprote 31.5 2.5E+02 0.0054 27.6 8.0 32 45-76 381-412 (758)
85 COG1289 Predicted membrane pro 31.2 3.7E+02 0.0081 25.2 8.9 74 44-122 407-485 (674)
86 PF06081 DUF939: Bacterial pro 31.1 2.3E+02 0.005 21.3 8.0 16 108-123 114-129 (141)
87 PF07787 DUF1625: Protein of u 30.8 1.5E+02 0.0034 24.2 5.7 58 32-97 188-245 (248)
88 TIGR02973 nitrate_rd_NapE peri 30.5 1.5E+02 0.0032 19.2 4.3 15 88-102 25-39 (42)
89 PRK13022 secF preprotein trans 30.4 3E+02 0.0065 23.4 7.5 28 47-74 235-262 (289)
90 PRK15127 multidrug efflux syst 30.1 86 0.0019 31.2 4.7 59 51-115 983-1044(1049)
91 PF00873 ACR_tran: AcrB/AcrD/A 30.0 4.7E+02 0.01 25.7 9.6 79 41-125 433-515 (1021)
92 PRK10263 DNA translocase FtsK; 29.8 4E+02 0.0087 28.3 9.4 21 45-65 142-162 (1355)
93 TIGR00847 ccoS cytochrome oxid 29.7 1.1E+02 0.0023 20.4 3.7 27 86-118 15-41 (51)
94 TIGR01097 PhnE phosphonate ABC 29.6 2.9E+02 0.0063 22.0 7.5 26 90-115 135-161 (250)
95 PF02397 Bac_transf: Bacterial 29.3 62 0.0014 26.2 3.1 24 51-74 6-29 (187)
96 TIGR01998 PTS-II-BC-nag PTS sy 28.8 1.8E+02 0.004 26.6 6.3 41 48-88 152-192 (476)
97 PRK09776 putative diguanylate 28.6 5.2E+02 0.011 24.6 10.2 18 44-61 141-158 (1092)
98 COG5346 Predicted membrane pro 27.7 1.1E+02 0.0024 24.3 4.1 9 1-9 61-69 (136)
99 PF13072 DUF3936: Protein of u 27.5 23 0.00049 22.6 0.2 21 117-137 11-31 (38)
100 TIGR02972 TMAO_torE trimethyla 27.4 1.7E+02 0.0037 19.3 4.3 15 88-102 30-44 (47)
101 PTZ00370 STEVOR; Provisional 27.3 3.1E+02 0.0066 24.4 7.1 18 31-48 180-197 (296)
102 TIGR02790 nickel_nikC nickel A 26.7 3.5E+02 0.0076 22.0 8.6 38 64-102 105-145 (258)
103 PRK10631 p-hydroxybenzoic acid 26.4 6E+02 0.013 24.6 11.4 44 33-76 58-103 (652)
104 TIGR03003 ectoine_ehuD ectoine 26.1 3.1E+02 0.0067 21.2 7.8 31 86-116 89-122 (212)
105 COG4459 NapE Periplasmic nitra 26.0 1.9E+02 0.0042 20.1 4.6 19 89-109 42-60 (62)
106 PRK12652 putative monovalent c 25.9 91 0.002 27.6 3.7 39 27-65 171-210 (357)
107 PF03672 UPF0154: Uncharacteri 25.8 1.7E+02 0.0038 20.3 4.4 20 92-111 18-37 (64)
108 PRK14726 bifunctional preprote 25.3 3.2E+02 0.0069 27.4 7.6 37 41-77 471-507 (855)
109 COG1292 BetT Choline-glycine b 25.2 5.6E+02 0.012 24.6 8.9 91 14-129 438-533 (537)
110 PRK12933 secD preprotein trans 25.1 2.9E+02 0.0064 26.6 7.1 44 42-85 541-584 (604)
111 PF05745 CRPA: Chlamydia 15 kD 25.0 1.7E+02 0.0038 23.5 4.8 39 30-73 68-106 (150)
112 PRK14402 membrane protein; Pro 24.9 3.1E+02 0.0067 22.5 6.5 35 51-85 107-144 (198)
113 PRK09946 hypothetical protein; 24.9 1.2E+02 0.0026 26.5 4.2 25 92-116 13-37 (270)
114 TIGR02976 phageshock_pspB phag 24.8 2.6E+02 0.0056 19.8 7.0 38 92-129 18-58 (75)
115 COG4537 ComGC Competence prote 24.7 59 0.0013 24.9 2.0 28 40-67 12-39 (107)
116 COG2020 STE14 Putative protein 24.5 3.5E+02 0.0077 21.3 8.1 64 38-102 70-156 (187)
117 PF05532 CsbD: CsbD-like; Int 24.4 84 0.0018 20.5 2.5 23 109-131 31-53 (53)
118 TIGR02797 exbB tonB-system ene 24.3 64 0.0014 26.1 2.3 20 43-62 166-185 (211)
119 TIGR01104 V_PPase vacuolar-typ 23.8 1.6E+02 0.0034 29.0 5.2 37 86-123 11-47 (697)
120 COG1422 Predicted membrane pro 23.5 4.5E+02 0.0097 22.1 9.8 11 117-127 76-86 (201)
121 PF05283 MGC-24: Multi-glycosy 23.4 89 0.0019 25.7 3.0 26 76-101 160-185 (186)
122 PRK15135 histidine/lysine/argi 23.2 3.7E+02 0.008 21.0 8.8 31 86-116 96-129 (228)
123 PF12259 DUF3609: Protein of u 23.1 17 0.00037 32.3 -1.3 14 91-104 314-327 (361)
124 PF14219 DUF4328: Domain of un 23.0 1.6E+02 0.0036 22.5 4.3 27 75-101 24-50 (171)
125 PF01864 DUF46: Putative integ 22.7 3.2E+02 0.0069 22.1 6.0 16 101-116 116-131 (175)
126 PRK10555 aminoglycoside/multid 22.6 2.8E+02 0.0062 27.6 6.8 51 52-108 981-1034(1037)
127 PF09972 DUF2207: Predicted me 21.9 5.1E+02 0.011 22.2 7.7 18 96-113 448-465 (511)
128 PRK08124 flagellar motor prote 21.8 2.9E+02 0.0064 23.2 5.9 48 44-102 159-206 (263)
129 TIGR02805 exbB2 tonB-system en 21.7 97 0.0021 24.4 2.8 21 42-62 101-121 (138)
130 PRK12911 bifunctional preprote 21.5 4.3E+02 0.0092 28.3 7.9 34 43-76 1010-1043(1403)
131 PF11990 DUF3487: Protein of u 21.1 3.8E+02 0.0082 20.4 6.6 7 94-100 83-89 (121)
132 PF06813 Nodulin-like: Nodulin 21.0 2.9E+02 0.0062 23.1 5.6 11 57-67 239-249 (250)
133 PRK02391 heat shock protein Ht 20.8 5.3E+02 0.012 22.0 8.0 37 89-125 53-89 (296)
134 PF05337 CSF-1: Macrophage col 20.7 33 0.00072 30.2 0.0 18 63-80 229-246 (285)
135 COG3180 AbrB Putative ammonia 20.6 6.4E+02 0.014 22.8 8.1 40 91-135 102-141 (352)
136 PRK15099 O-antigen translocase 20.6 5.2E+02 0.011 21.8 7.2 38 44-81 364-401 (416)
137 PRK12585 putative monovalent c 20.6 4.9E+02 0.011 21.9 6.8 17 99-115 93-111 (197)
138 PRK11588 hypothetical protein; 20.6 3.1E+02 0.0068 25.8 6.3 27 44-73 160-186 (506)
139 PRK06231 F0F1 ATP synthase sub 20.4 2.5E+02 0.0055 22.7 5.1 10 91-100 59-68 (205)
140 PF07332 DUF1469: Protein of u 20.4 3.3E+02 0.0071 19.4 9.0 21 107-127 100-120 (121)
141 COG3197 FixS Uncharacterized p 20.3 1.1E+02 0.0025 21.0 2.6 22 64-98 6-27 (58)
142 PF12270 Cyt_c_ox_IV: Cytochro 20.1 1.3E+02 0.0029 23.7 3.3 15 112-126 68-82 (137)
No 1
>PF01277 Oleosin: Oleosin; InterPro: IPR000136 Oleosins [] are the proteinaceous components of plants' lipid storage bodies called oil bodies. Oil bodies are small droplets (0.2 to 1.5 mu-m in diameter) containing mostly triacylglycerol that are surrounded by a phospholipid/ oleosin annulus. Oleosins may have a structural role in stabilising the lipid body during dessication of the seed, by preventing coalescence of the oil. They may also provide recognition signals for specific lipase anchorage in lipolysis during seedling growth. Oleosins are found in the monolayer lipid/ water interface of oil bodies and probably interact with both the lipid and phospholipid moieties. Oleosins are proteins of 16 Kd to 24 Kd and are composed of three domains: an N-terminal hydrophilic region of variable length (from 30 to 60 residues); a central hydrophobic domain of about 70 residues and a C-terminal amphipathic region of variable length (from 60 to 100 residues). The central hydrophobic domain is proposed to be made up of beta-strand structure and to interact with the lipids []. It is the only domain whose sequence is conserved.; GO: 0012511 monolayer-surrounded lipid storage body, 0016021 integral to membrane
Probab=100.00 E-value=1.1e-52 Score=317.92 Aligned_cols=117 Identities=53% Similarity=0.922 Sum_probs=115.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhchhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 040357 19 RSHQVVKAATAVTAGGSLLVLSGLTMAGTVIALTIATPLLVICSPVLVPAVITVSLLIMGFLASGGFGVAAISVLSWIYR 98 (144)
Q Consensus 19 ss~qvl~~~tl~~~g~~LL~LaGlTL~gtvigL~vaTPLfvifSPVLVPAai~~~l~~~Gfl~sg~~gltals~lsW~y~ 98 (144)
|++|+++++++++++++||+|+|+||+||++||+++||||+||||||||++|+++++++||+++|+||++++++++|+||
T Consensus 1 s~~qvl~~~~~~~~gg~LL~LaGlTL~gtvigL~vatPLfvifSPVlVPaai~~~l~~~Gfl~sg~~g~~~ls~lsW~~~ 80 (118)
T PF01277_consen 1 STSQVLAVVTLLPAGGTLLVLAGLTLAGTVIGLAVATPLFVIFSPVLVPAAIAIGLAVAGFLTSGAFGLTALSSLSWMYN 80 (118)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCCcHHHHHHHHhhHHHHHHHHHHHhchh
Q 040357 99 YVTGGHPPGADQLEQARMKLAGKAREMRDRAEQFGQQ 135 (144)
Q Consensus 99 y~rg~~p~g~~~ld~Ar~ri~d~A~~v~~ka~e~G~q 135 (144)
|+||+||+++||+||||+|++|+|+|++||+|||||+
T Consensus 81 y~rg~~~~~~~q~d~Ak~ri~d~a~~v~~kake~gq~ 117 (118)
T PF01277_consen 81 YFRGRHPPGPDQLDYAKRRIADTASYVGQKAKEVGQK 117 (118)
T ss_pred HhccCCCCCCccHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 9999999999999999999999999999999999975
No 2
>PF01277 Oleosin: Oleosin; InterPro: IPR000136 Oleosins [] are the proteinaceous components of plants' lipid storage bodies called oil bodies. Oil bodies are small droplets (0.2 to 1.5 mu-m in diameter) containing mostly triacylglycerol that are surrounded by a phospholipid/ oleosin annulus. Oleosins may have a structural role in stabilising the lipid body during dessication of the seed, by preventing coalescence of the oil. They may also provide recognition signals for specific lipase anchorage in lipolysis during seedling growth. Oleosins are found in the monolayer lipid/ water interface of oil bodies and probably interact with both the lipid and phospholipid moieties. Oleosins are proteins of 16 Kd to 24 Kd and are composed of three domains: an N-terminal hydrophilic region of variable length (from 30 to 60 residues); a central hydrophobic domain of about 70 residues and a C-terminal amphipathic region of variable length (from 60 to 100 residues). The central hydrophobic domain is proposed to be made up of beta-strand structure and to interact with the lipids []. It is the only domain whose sequence is conserved.; GO: 0012511 monolayer-surrounded lipid storage body, 0016021 integral to membrane
Probab=94.61 E-value=1.6 Score=33.63 Aligned_cols=98 Identities=20% Similarity=0.264 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHhhchhhh---HHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHhcCCCCCCC
Q 040357 35 SLLVLSGLTMAGTVIALTIATPLLVICSPVLV---PAVITVSLLIMGFLASG--GFGVAAISVLSWIYRYVTGGHPPGAD 109 (144)
Q Consensus 35 ~LL~LaGlTL~gtvigL~vaTPLfvifSPVLV---PAai~~~l~~~Gfl~sg--~~gltals~lsW~y~y~rg~~p~g~~ 109 (144)
+++...|..|.=+-+-|+-+.=-+++.+|++| |.-+-+++++ ++...| ..|.-+++.++|+-.-+|=.+...+.
T Consensus 10 ~~~~~gg~LL~LaGlTL~gtvigL~vatPLfvifSPVlVPaai~~-~l~~~Gfl~sg~~g~~~ls~lsW~~~y~rg~~~~ 88 (118)
T PF01277_consen 10 TLLPAGGTLLVLAGLTLAGTVIGLAVATPLFVIFSPVLVPAAIAI-GLAVAGFLTSGAFGLTALSSLSWMYNYFRGRHPP 88 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCCC
Confidence 34444444444444444444444788899876 6555544433 444443 34555788899999988877766665
Q ss_pred cHHHHHHHHhhHHHHHHHHHHHhchhhh
Q 040357 110 QLEQARMKLAGKAREMRDRAEQFGQQQI 137 (144)
Q Consensus 110 ~ld~Ar~ri~d~A~~v~~ka~e~G~q~~ 137 (144)
..| |+...-+.+.|++++.+|+..
T Consensus 89 ~~~----q~d~Ak~ri~d~a~~v~~kak 112 (118)
T PF01277_consen 89 GPD----QLDYAKRRIADTASYVGQKAK 112 (118)
T ss_pred CCc----cHHHHHHHHHHHHHHHHHHHH
Confidence 553 455556678888888887755
No 3
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=93.61 E-value=0.33 Score=37.00 Aligned_cols=49 Identities=18% Similarity=0.262 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhhhHHhhchh-hhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcC
Q 040357 44 MAGTVIALTIATPLLVICSPV-LVPAVITVSLLIMGFLASGGFGVAAISVLSWIYRYVTGG 103 (144)
Q Consensus 44 L~gtvigL~vaTPLfvifSPV-LVPAai~~~l~~~Gfl~sg~~gltals~lsW~y~y~rg~ 103 (144)
..++++|+.++.|+.+++.++ .+|..+.++.+..-|+. -.|+-|+-|||
T Consensus 31 ~~~~~~g~~~gl~la~~~g~~a~~pt~~ll~~~~~v~~g-----------g~~l~rlKRGK 80 (121)
T PF11990_consen 31 GVGFVAGLVVGLPLALLTGWWAMIPTGALLGPILGVFVG-----------GKLLARLKRGK 80 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------HHHHHHHHcCC
Confidence 346788888999998889888 67877666665544433 35777777764
No 4
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=92.16 E-value=4.5 Score=31.41 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHhhhHHhhchhhh
Q 040357 42 LTMAGTVIALTIATPLLVICSPVLV 66 (144)
Q Consensus 42 lTL~gtvigL~vaTPLfvifSPVLV 66 (144)
+.+...++++.++.. .++++|++.
T Consensus 101 ~~~~~~~~~~~i~~~-~~i~~~~~l 124 (181)
T PF08006_consen 101 IVLILLVLALIIAVI-AFILSGIIL 124 (181)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 333444555444433 334555444
No 5
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=90.04 E-value=3.8 Score=31.69 Aligned_cols=15 Identities=27% Similarity=0.193 Sum_probs=7.1
Q ss_pred hHHhhchhhhHHHHH
Q 040357 57 LLVICSPVLVPAVIT 71 (144)
Q Consensus 57 LfvifSPVLVPAai~ 71 (144)
+-.++|+++..+.++
T Consensus 33 l~~~~s~~lg~~~lA 47 (191)
T PF04156_consen 33 LGALISFILGIALLA 47 (191)
T ss_pred hHHHHHHHHHHHHHH
Confidence 444555554444443
No 6
>PRK09459 pspG phage shock protein G; Reviewed
Probab=87.38 E-value=6.2 Score=28.51 Aligned_cols=26 Identities=27% Similarity=0.644 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHh
Q 040357 35 SLLVLSGLTMAGTVIALTIATPLLVI 60 (144)
Q Consensus 35 ~LL~LaGlTL~gtvigL~vaTPLfvi 60 (144)
..|+++|+|+.|...++.+++-+..+
T Consensus 12 ~~LlvTGiSllgv~aAl~va~~vM~l 37 (76)
T PRK09459 12 VMLLVTGISLLGIIAALGVATLVMFL 37 (76)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999998887765544
No 7
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=84.82 E-value=12 Score=26.89 Aligned_cols=17 Identities=18% Similarity=0.073 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHhcC
Q 040357 87 VAAISVLSWIYRYVTGG 103 (144)
Q Consensus 87 ltals~lsW~y~y~rg~ 103 (144)
+.+.-.+.|.+|.++++
T Consensus 84 ~la~i~~~~~~~~l~~~ 100 (121)
T PF07332_consen 84 LLALILLLIGRRRLRRA 100 (121)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 44445566777777753
No 8
>PF07178 TraL: TraL protein; InterPro: IPR009838 This entry represents bacterial TraL proteins. TraL is a predicted peripheral membrane protein involved in bacterial sex pilus assembly []. TraL is part of the type IV secretion system for conjugative plasmid transfer []. The exact function of TraL is unknown.; GO: 0000746 conjugation, 0019867 outer membrane
Probab=83.90 E-value=4.2 Score=29.16 Aligned_cols=36 Identities=31% Similarity=0.506 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhh-HHHHHHHHHHHHHHHHHhcCCCCC
Q 040357 72 VSLLIMGFLASG-GFGVAAISVLSWIYRYVTGGHPPG 107 (144)
Q Consensus 72 ~~l~~~Gfl~sg-~~gltals~lsW~y~y~rg~~p~g 107 (144)
+...+.|++.+. ..|+..-..+.|.||+++..+|.|
T Consensus 27 ~~~~~~gi~~~~~~~g~i~g~~~~~~~~k~K~~~~~g 63 (95)
T PF07178_consen 27 LILFVIGILSGHFLIGLILGIVLWWGYRKFKKGRGRG 63 (95)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHccCCcc
Confidence 333444555555 356666667899999999888754
No 9
>PRK10801 colicin uptake protein TolQ; Provisional
Probab=82.17 E-value=16 Score=30.21 Aligned_cols=73 Identities=16% Similarity=0.156 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhhhHHhh---chhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHhh
Q 040357 44 MAGTVIALTIATPLLVIC---SPVLVPAVITVSLLIMGFLASGGFGVAAISVLSWIYRYVTGGHPPGADQLEQARMKLAG 120 (144)
Q Consensus 44 L~gtvigL~vaTPLfvif---SPVLVPAai~~~l~~~Gfl~sg~~gltals~lsW~y~y~rg~~p~g~~~ld~Ar~ri~d 120 (144)
|.|||+|++-+.--+=.- +|-.+-.+|..+|.++. +|+..-=.-...|||+.. ++|.-..+|-+
T Consensus 139 LlGTV~Gmi~aF~~i~~~g~~~~~~~a~GI~~ALitTa------~GL~vAIPAli~yN~f~~-------ri~~i~~~le~ 205 (227)
T PRK10801 139 LFGTVWGIMHAFIALGAVKQATLQMVAPGIAEALIATA------IGLFAAIPAVMAYNRLNQ-------RVNKLELNYDN 205 (227)
T ss_pred HHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 568888887753222111 34445555555555443 344444444578999974 45666666666
Q ss_pred HHHHHHHHH
Q 040357 121 KAREMRDRA 129 (144)
Q Consensus 121 ~A~~v~~ka 129 (144)
.+.++-+.-
T Consensus 206 ~a~~ll~~l 214 (227)
T PRK10801 206 FMEEFTAIL 214 (227)
T ss_pred HHHHHHHHH
Confidence 666665544
No 10
>TIGR02797 exbB tonB-system energizer ExbB. This model describes ExbB proteins, part of the MotA/TolQ/ExbB protein family. The paired proteins MotA and MotB, TolQ and TolR, and ExbB and ExbD harness the proton-motive force to drive the flagellar motor, energize the Tol-Pal system, or energize TonB, respectively. Tol-Pal and TonB are both active at the outer membrane. Genomes may have many different TonB-dependent receptors, of which many of those characterized are involved in siderophore transport across the outer membrane.
Probab=77.96 E-value=21 Score=28.96 Aligned_cols=70 Identities=20% Similarity=0.159 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhhhHHhh---chhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHhh
Q 040357 44 MAGTVIALTIATPLLVIC---SPVLVPAVITVSLLIMGFLASGGFGVAAISVLSWIYRYVTGGHPPGADQLEQARMKLAG 120 (144)
Q Consensus 44 L~gtvigL~vaTPLfvif---SPVLVPAai~~~l~~~Gfl~sg~~gltals~lsW~y~y~rg~~p~g~~~ld~Ar~ri~d 120 (144)
|.|||+|++-+.=-+=-- +|-.|-.+|.-+|.++ .. |+..-=.-...|||++. +.|.-.++|.+
T Consensus 134 LLGTV~Gmi~aF~~ia~~g~~~~~~lA~GI~eALitT----A~--GL~VAIPAli~yn~f~~-------ri~~~~~~le~ 200 (211)
T TIGR02797 134 LFGTVWGIMNSFIGISKSQTTNLAVVAPGIAEALLAT----AI--GLVAAIPAVVIYNVFAR-------SIAGYRALLAD 200 (211)
T ss_pred HHHHHHHHHHHHHHHhhCCCCCHHHHhHHHHHHHHHH----HH--HHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 568888887653322110 3433434444444443 33 44433444578999974 46777777777
Q ss_pred HHHHHH
Q 040357 121 KAREMR 126 (144)
Q Consensus 121 ~A~~v~ 126 (144)
.+.++-
T Consensus 201 ~~~e~~ 206 (211)
T TIGR02797 201 ASAGVE 206 (211)
T ss_pred HHHHHH
Confidence 776654
No 11
>PF09583 Phageshock_PspG: Phage shock protein G (Phageshock_PspG); InterPro: IPR014318 This protein previously was designated yjbO in Escherichia coli. It is found only in genomes that have the phage shock operon (psp), but it is only rarely encoded near other psp genes. The psp regulon is upregulated in response to a number of stress conditions, including ethanol, expression of the filamentous phage secretin protein IV and other secretins and heat shock.
Probab=77.72 E-value=17 Score=25.53 Aligned_cols=26 Identities=23% Similarity=0.644 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHh
Q 040357 35 SLLVLSGLTMAGTVIALTIATPLLVI 60 (144)
Q Consensus 35 ~LL~LaGlTL~gtvigL~vaTPLfvi 60 (144)
..|+++|+|+.|...++.+++-+..+
T Consensus 12 ~~Ll~TGvsllgv~aA~~va~~vm~l 37 (65)
T PF09583_consen 12 AMLLVTGVSLLGVLAALAVAFAVMFL 37 (65)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999988755443
No 12
>PRK10414 biopolymer transport protein ExbB; Provisional
Probab=77.04 E-value=27 Score=29.39 Aligned_cols=71 Identities=18% Similarity=0.145 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhhhHH---hhchhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHhh
Q 040357 44 MAGTVIALTIATPLLV---ICSPVLVPAVITVSLLIMGFLASGGFGVAAISVLSWIYRYVTGGHPPGADQLEQARMKLAG 120 (144)
Q Consensus 44 L~gtvigL~vaTPLfv---ifSPVLVPAai~~~l~~~Gfl~sg~~gltals~lsW~y~y~rg~~p~g~~~ld~Ar~ri~d 120 (144)
|.|||+|++-+.--+= --+|-.|-.+|.-+|..+.+ |+..--.-...|||++.+ +|.-..+|.+
T Consensus 145 LlGTV~Gmi~aF~~ia~~g~~~~~~va~GI~eALitTa~------GL~vAIPAliayn~f~~r-------i~~~~~~me~ 211 (244)
T PRK10414 145 LFGTVWGIMNSFIGIAQTQTTNLAVVAPGIAEALLATAI------GLVAAIPAVVIYNVFARQ-------IGGYKAMLGD 211 (244)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 5688888887533321 02566666666666665543 555445556899999754 4555566666
Q ss_pred HHHHHHH
Q 040357 121 KAREMRD 127 (144)
Q Consensus 121 ~A~~v~~ 127 (144)
.+.+.-+
T Consensus 212 ~a~~l~~ 218 (244)
T PRK10414 212 VAAQVLL 218 (244)
T ss_pred HHHHHHH
Confidence 6655554
No 13
>COG0811 TolQ Biopolymer transport proteins [Intracellular trafficking and secretion]
Probab=76.80 E-value=36 Score=27.72 Aligned_cols=72 Identities=18% Similarity=0.102 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHhhhHHhhc--hhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHhhH
Q 040357 44 MAGTVIALTIATPLLVICS--PVLVPAVITVSLLIMGFLASGGFGVAAISVLSWIYRYVTGGHPPGADQLEQARMKLAGK 121 (144)
Q Consensus 44 L~gtvigL~vaTPLfvifS--PVLVPAai~~~l~~~Gfl~sg~~gltals~lsW~y~y~rg~~p~g~~~ld~Ar~ri~d~ 121 (144)
|.|||+|+.-+ |.=.+ ==-=|++++-++..+=+.+ +.|+.+--.-...|||++.+ .+.-..++.+.
T Consensus 134 L~GTV~GIm~a---F~~i~~~~~~~~a~vA~GIseAL~aT--A~GL~vAIPAvi~yn~l~r~-------~~~~~~~~e~~ 201 (216)
T COG0811 134 LLGTVWGIMPA---FIGIGAGGGADLAVVAPGISEALIAT--AIGLFVAIPAVVAYNVLRRK-------VEELLAKLEDF 201 (216)
T ss_pred HHHHHHHHHHH---HHHHhccCCCCHHHHHhhHHHHHHHH--HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 46788887653 33333 0012344444444332222 34555556667899999863 45556667666
Q ss_pred HHHHHH
Q 040357 122 AREMRD 127 (144)
Q Consensus 122 A~~v~~ 127 (144)
++++-+
T Consensus 202 ~~~l~~ 207 (216)
T COG0811 202 AEELEL 207 (216)
T ss_pred HHHHHH
Confidence 666655
No 14
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=76.68 E-value=9.6 Score=28.97 Aligned_cols=32 Identities=16% Similarity=0.290 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhhhHHhhc-hhhhHHHHHHHHHH
Q 040357 45 AGTVIALTIATPLLVICS-PVLVPAVITVSLLI 76 (144)
Q Consensus 45 ~gtvigL~vaTPLfvifS-PVLVPAai~~~l~~ 76 (144)
++.+.|+++..|+.+++. -+++|..+.++.++
T Consensus 29 ~~~~~gl~~g~~l~~~~~~w~~~p~~~lig~~l 61 (111)
T TIGR03750 29 VGLAAGLVLGLLLALLAGPWALIPTGALLGPIL 61 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888776666 55667666665543
No 15
>TIGR02796 tolQ TolQ protein. TolQ is one of the essential components of the Tol-Pal system. Together with TolR, it harnesses protonmotive force to energize TolA, which spans the periplasm to reach the complex of TolB and Pal at the outer member. The tol-pal system proves to be important for maintaining outer membrane integrity. Gene pairs similar to the TolQ and TolR gene pair often number several per genome, but this model describes specificially TolQ per se, as found in tol-pal operons. A close homolog, excluded from this model, is ExbB of the ExbB/ExbD/TonB protein complex, which powers transport of siderophores and vitamin B12 across the bacterial outer membrane. The Tol-Pal system is exploited by colicin and filamentous phage DNA to enter the cell. It is also implicated in pathogenesis in several bacterial species
Probab=76.58 E-value=33 Score=27.87 Aligned_cols=91 Identities=13% Similarity=0.106 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHh----hchhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 040357 20 SHQVVKAATAVTAGGSLLVLSGLTMAGTVIALTIATPLLVI----CSPVLVPAVITVSLLIMGFLASGGFGVAAISVLSW 95 (144)
Q Consensus 20 s~qvl~~~tl~~~g~~LL~LaGlTL~gtvigL~vaTPLfvi----fSPVLVPAai~~~l~~~Gfl~sg~~gltals~lsW 95 (144)
-.+-+.++.......-+|. |.|||+|++-+.--+=. -+|-.+-.+|..+|.++. .++.++--+ .=
T Consensus 118 le~~l~~L~ti~~~aPllG-----LLGTV~Gmi~aF~~i~~~~g~~~~~~la~GI~~ALitTa----~GL~vAIPa--li 186 (215)
T TIGR02796 118 LESGLPFLATIGSTSPFIG-----LFGTVWGIMHSFQAIGGSKNQATLAVVAPGIAEALIATA----IGLFAAIPA--VI 186 (215)
T ss_pred HHhhhHHHHHHHHHhhHHH-----HHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHH----HHHHHHHHH--HH
Confidence 3344445555555555554 45788888765433322 123334444444444433 233333333 35
Q ss_pred HHHHHhcCCCCCCCcHHHHHHHHhhHHHHHHHH
Q 040357 96 IYRYVTGGHPPGADQLEQARMKLAGKAREMRDR 128 (144)
Q Consensus 96 ~y~y~rg~~p~g~~~ld~Ar~ri~d~A~~v~~k 128 (144)
.|||++. ++|.-..+|.+.+.++-++
T Consensus 187 ~yn~f~~-------~i~~~~~~me~~~~~l~~~ 212 (215)
T TIGR02796 187 AYNKLST-------QVNKIEQRYENFADEFSTI 212 (215)
T ss_pred HHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 7999975 3555566666666655443
No 16
>PF12537 DUF3735: Protein of unknown function (DUF3735); InterPro: IPR022535 This conserved domain is found in a subunit of a voltage dependent anion channel required for acidification and functions of the Golgi apparatus; it may function in counter-ion conductance. It belongs to the Golgi pH regulator (1.A.38 from TC) family
Probab=76.16 E-value=11 Score=25.90 Aligned_cols=56 Identities=14% Similarity=0.366 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCC-CCcHHHHHHHHhhHHHHHHHHHHHh
Q 040357 71 TVSLLIMGFLASGGFGVAAISVLSWIYRYVTGGHPPG-ADQLEQARMKLAGKAREMRDRAEQF 132 (144)
Q Consensus 71 ~~~l~~~Gfl~sg~~gltals~lsW~y~y~rg~~p~g-~~~ld~Ar~ri~d~A~~v~~ka~e~ 132 (144)
++++.+.++||+ .++++.-.-.+.|+. +|.. ...+..+.+|+..+-..+.+|-|++
T Consensus 15 ViGVt~mAiLSG----~gaVstpy~~~~~~~--~~v~~~~~i~~~~~~l~~t~~~l~~Kk~~l 71 (72)
T PF12537_consen 15 VIGVTLMAILSG----FGAVSTPYYYFSYFR--RPVSRESDINNAERRLWHTRDMLVEKKKRL 71 (72)
T ss_pred HHHHHHHHHHhh----hhHHccHHHHHHHHH--hcCChHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466667777763 334444333334443 2333 4567777788877777777777664
No 17
>PF01618 MotA_ExbB: MotA/TolQ/ExbB proton channel family MotA family only; InterPro: IPR002898 This family groups together integral membrane proteins that appear to be involved in translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flagellar motor that uses a proton gradient to generate rotational motion in the flagellar []. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.; GO: 0008565 protein transporter activity, 0006810 transport, 0016020 membrane
Probab=75.68 E-value=29 Score=25.89 Aligned_cols=53 Identities=25% Similarity=0.365 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhhhHHh---hchhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhc
Q 040357 44 MAGTVIALTIATPLLVI---CSPVLVPAVITVSLLIMGFLASGGFGVAAISVLSWIYRYVTG 102 (144)
Q Consensus 44 L~gtvigL~vaTPLfvi---fSPVLVPAai~~~l~~~Gfl~sg~~gltals~lsW~y~y~rg 102 (144)
|.||++|++.+..-+=. -.|--+=.+|..+|.. +. +|+..--....+|+|++.
T Consensus 70 LlGTv~Gmi~~f~~l~~~~~~~~~~l~~gi~~Al~t----T~--~GL~vai~~~~~~~~l~~ 125 (139)
T PF01618_consen 70 LLGTVIGMIEAFQALAETGSGDPSQLAGGISVALIT----TA--YGLVVAIPALPFYNYLKR 125 (139)
T ss_pred HHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHH----HH--HHHHHHHHHHHHHHHHHH
Confidence 56888988776544322 1233333333333332 22 233322333388998864
No 18
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=72.42 E-value=36 Score=32.78 Aligned_cols=22 Identities=27% Similarity=0.564 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhhhHHhhchhh
Q 040357 44 MAGTVIALTIATPLLVICSPVL 65 (144)
Q Consensus 44 L~gtvigL~vaTPLfvifSPVL 65 (144)
+.||++|.+++.+++.++-+..
T Consensus 432 i~GTllG~~lg~~ll~l~p~~~ 453 (704)
T TIGR01666 432 IIGTLLGVVIGSPLLYFNPSLE 453 (704)
T ss_pred HHHHHHHHHHHHHHHHHhccHH
Confidence 4599999999999887764433
No 19
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=70.99 E-value=38 Score=32.46 Aligned_cols=19 Identities=32% Similarity=0.543 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhhhHHhhc
Q 040357 44 MAGTVIALTIATPLLVICS 62 (144)
Q Consensus 44 L~gtvigL~vaTPLfvifS 62 (144)
+.||++|.+++.+++.++.
T Consensus 434 i~GTl~G~llg~~l~~l~p 452 (701)
T TIGR01667 434 IIGTVVGLVIGVALHFLIP 452 (701)
T ss_pred HHHHHHHHHHHHHHHHHcC
Confidence 4599999999888665543
No 20
>PRK15083 PTS system mannitol-specific transporter subunit IICBA; Provisional
Probab=70.66 E-value=15 Score=34.39 Aligned_cols=38 Identities=21% Similarity=0.185 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcHHHHHHHHhhHHHHHHHHHHHh
Q 040357 89 AISVLSWIYRYVTGGHPPGADQLEQARMKLAGKAREMRDRAEQF 132 (144)
Q Consensus 89 als~lsW~y~y~rg~~p~g~~~ld~Ar~ri~d~A~~v~~ka~e~ 132 (144)
.-..++|+++++.+++ ..|.+|.|++|+.+ +|+|-+|.
T Consensus 326 v~~v~t~~~~~~~~~~--~~~~~~~~~~~~~~----~~~~~~~~ 363 (639)
T PRK15083 326 VSFVVSAILLKTSKVK--EEDDLEAATRRMQD----MKAESKGA 363 (639)
T ss_pred HHHHHHHHHHHhcccc--chhhHHHHHHHHHH----hhhccccc
Confidence 3357788888776653 12369999999876 45555544
No 21
>TIGR02975 phageshock_pspG phage shock protein G. This protein previously was designated yjbO in E. coli. It is found only in genomes that have the phage shock operon (psp), but only rarely is encoded near other psp genes. The psp regulon is upregulated in response to a number of stress conditions, including ethanol, expression of the filamentous phage secretin protein IV and other secretins, and heat shock.
Probab=68.40 E-value=26 Score=24.57 Aligned_cols=26 Identities=23% Similarity=0.603 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHh
Q 040357 35 SLLVLSGLTMAGTVIALTIATPLLVI 60 (144)
Q Consensus 35 ~LL~LaGlTL~gtvigL~vaTPLfvi 60 (144)
..|.++|+|+.|...++.+++-+..+
T Consensus 11 ~~Ll~TGisllgv~aA~~va~~vm~l 36 (64)
T TIGR02975 11 VMLMVTGISLLGVLAALGVAVLFMAL 36 (64)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999988887655443
No 22
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=66.36 E-value=17 Score=27.51 Aligned_cols=64 Identities=20% Similarity=0.231 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhhhHHhhchhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHHhcCCCCCCCcHHHHHHHHhhHH
Q 040357 44 MAGTVIALTIATPLLVICSPVLVPAVITVSLLIMGFLASGGFGVAAISVLSWIY-RYVTGGHPPGADQLEQARMKLAGKA 122 (144)
Q Consensus 44 L~gtvigL~vaTPLfvifSPVLVPAai~~~l~~~Gfl~sg~~gltals~lsW~y-~y~rg~~p~g~~~ld~Ar~ri~d~A 122 (144)
|+|..-|+++..=-|++-+++.--+= .++.+|+ ..|+.+|-| ||-|.+. -++++.++..+.++-
T Consensus 45 L~Gi~~G~~vG~~~fl~~~~~~~A~n----wavgsF~--------l~s~~~we~Cr~~r~~~---~~~~~~~~e~~~~k~ 109 (118)
T PF12597_consen 45 LYGIAGGFGVGGLRFLFTSNPRKAAN----WAVGSFF--------LGSLGSWEYCRYNRRKE---RQQMKRAVEAMQEKK 109 (118)
T ss_pred HHHHHHHHHHHhhhhcccCCCccchh----hhhHHHH--------HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 34444455555555788887765432 2333332 246777876 3444322 244555555555543
No 23
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=65.71 E-value=27 Score=23.63 Aligned_cols=12 Identities=50% Similarity=0.861 Sum_probs=6.9
Q ss_pred HHHHHhhHHHHH
Q 040357 77 MGFLASGGFGVA 88 (144)
Q Consensus 77 ~Gfl~sg~~glt 88 (144)
.||+.+++.|++
T Consensus 3 ~g~l~Ga~~Ga~ 14 (74)
T PF12732_consen 3 LGFLAGAAAGAA 14 (74)
T ss_pred HHHHHHHHHHHH
Confidence 366666666543
No 24
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=65.58 E-value=55 Score=24.48 Aligned_cols=42 Identities=19% Similarity=0.210 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHhhHHHHHHHHHHHhc
Q 040357 87 VAAISVLSWIYRYVTGGHPPGADQLEQARMKLAGKAREMRDRAEQFG 133 (144)
Q Consensus 87 ltals~lsW~y~y~rg~~p~g~~~ld~Ar~ri~d~A~~v~~ka~e~G 133 (144)
.--+-.+-|+.++++..+. +..--+++.++++.-++|-++||
T Consensus 32 p~i~~~~~~i~~~l~~~~~-----~~~~~~~~~~k~~~~~~~i~kyg 73 (121)
T PF06695_consen 32 PFILLFLDKILKWLKRKPW-----LKKFYEWLEKKAEKKSKKIEKYG 73 (121)
T ss_pred HHHHHHHHHHHHHHHHhHH-----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345566777777765322 22233456666666666777776
No 25
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=63.25 E-value=16 Score=28.84 Aligned_cols=47 Identities=23% Similarity=0.437 Sum_probs=32.9
Q ss_pred HHhhch-hhhHHHHHHHHHHHHH-------HHhhHHHHHHHHHHHHHHHHHhcCC
Q 040357 58 LVICSP-VLVPAVITVSLLIMGF-------LASGGFGVAAISVLSWIYRYVTGGH 104 (144)
Q Consensus 58 fvifSP-VLVPAai~~~l~~~Gf-------l~sg~~gltals~lsW~y~y~rg~~ 104 (144)
.=.||| =|=|..++.+.++.++ +..-+.++...+..-|+|.|.||+|
T Consensus 81 ~GfFsP~SwWPl~la~~~al~~lGla~g~Wl~~iG~~~~i~~~~G~vfEy~rg~~ 135 (137)
T PF12270_consen 81 LGFFSPHSWWPLVLAAAAALVFLGLAFGWWLILIGAVLLIVAVVGWVFEYYRGPE 135 (137)
T ss_pred cCcCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeccCcc
Confidence 446898 6677666555444332 3444566788899999999999976
No 26
>PRK13707 conjugal transfer pilus assembly protein TraL; Provisional
Probab=62.94 E-value=25 Score=25.97 Aligned_cols=30 Identities=20% Similarity=0.253 Sum_probs=17.7
Q ss_pred HHHHHhhHH-HHHHHHHHHHHHHHHhcCCCC
Q 040357 77 MGFLASGGF-GVAAISVLSWIYRYVTGGHPP 106 (144)
Q Consensus 77 ~Gfl~sg~~-gltals~lsW~y~y~rg~~p~ 106 (144)
.|++++-.+ |+..-..+.|.||+++..+++
T Consensus 38 ~Gi~~~~~l~g~i~g~~~~~~~r~lK~g~g~ 68 (101)
T PRK13707 38 WGITTSKYLFGIIAAVLVWFGIRKLKKGRGS 68 (101)
T ss_pred HHHHHchHHHHHHHHHHHHHHHHHHHcCCCh
Confidence 355554333 333334567899999887653
No 27
>COG5393 Predicted membrane protein [Function unknown]
Probab=61.19 E-value=80 Score=24.91 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhH
Q 040357 36 LLVLSGLTMAGTVIALTIATPLL 58 (144)
Q Consensus 36 LL~LaGlTL~gtvigL~vaTPLf 58 (144)
+|+++|+|+.=+..||.--+-|.
T Consensus 50 lllm~gLtl~fa~~~lmsL~vLv 72 (131)
T COG5393 50 LLLMAGLTLLFAAFGLMSLMVLV 72 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888988887777765544433
No 28
>PRK11365 ssuC alkanesulfonate transporter permease subunit; Provisional
Probab=57.83 E-value=80 Score=25.84 Aligned_cols=10 Identities=40% Similarity=0.474 Sum_probs=5.5
Q ss_pred CcHHHHHHHH
Q 040357 18 PRSHQVVKAA 27 (144)
Q Consensus 18 Pss~qvl~~~ 27 (144)
|+..+++..+
T Consensus 40 P~p~~v~~~~ 49 (263)
T PRK11365 40 PSPEGVVTAF 49 (263)
T ss_pred CCHHHHHHHH
Confidence 5556666543
No 29
>COG4709 Predicted membrane protein [Function unknown]
Probab=57.46 E-value=1.1e+02 Score=25.53 Aligned_cols=22 Identities=23% Similarity=0.057 Sum_probs=10.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHH
Q 040357 78 GFLASGGFGVAAISVLSWIYRY 99 (144)
Q Consensus 78 Gfl~sg~~gltals~lsW~y~y 99 (144)
.+..+.++|+.......-+.+|
T Consensus 152 ~~IGs~lLgl~~~~~if~iv~~ 173 (195)
T COG4709 152 IGIGSLLLGLGLGIVIFAIVKY 173 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666655443333333
No 30
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=57.03 E-value=89 Score=24.15 Aligned_cols=14 Identities=7% Similarity=0.207 Sum_probs=7.7
Q ss_pred HhhhHHhhchhhhH
Q 040357 54 ATPLLVICSPVLVP 67 (144)
Q Consensus 54 aTPLfvifSPVLVP 67 (144)
..|++++++.+...
T Consensus 119 ~~~~~l~~~~~~~~ 132 (181)
T PF08006_consen 119 LSGIILLISGIFGG 132 (181)
T ss_pred HHHHHHHHHHHHHh
Confidence 45666666555443
No 31
>PRK01345 heat shock protein HtpX; Provisional
Probab=54.86 E-value=1.3e+02 Score=25.85 Aligned_cols=32 Identities=9% Similarity=0.003 Sum_probs=16.6
Q ss_pred HHHHHHHhcCCCCCCCcHHHHHHHHhhHHHHH
Q 040357 94 SWIYRYVTGGHPPGADQLEQARMKLAGKAREM 125 (144)
Q Consensus 94 sW~y~y~rg~~p~g~~~ld~Ar~ri~d~A~~v 125 (144)
.|+.....+.++..+++-..-++++.+.+...
T Consensus 49 ~~~~~~~~~a~~v~~~~~p~L~~~v~~La~~a 80 (317)
T PRK01345 49 DKMVLRMYGAQEVDERSAPELYRMVRDLARRA 80 (317)
T ss_pred HHHHHHHcCCeECCcccCHHHHHHHHHHHHHc
Confidence 44555555666665555444455554444433
No 32
>PRK15100 amino acid ABC transporter permease; Provisional
Probab=54.37 E-value=1.1e+02 Score=24.28 Aligned_cols=9 Identities=33% Similarity=0.206 Sum_probs=5.7
Q ss_pred CCcHHHHHH
Q 040357 108 ADQLEQARM 116 (144)
Q Consensus 108 ~~~ld~Ar~ 116 (144)
+++.|.||.
T Consensus 116 ~~~~eAA~~ 124 (220)
T PRK15100 116 KGQWEAAAS 124 (220)
T ss_pred HhHHHHHHH
Confidence 466777764
No 33
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=54.15 E-value=12 Score=26.25 Aligned_cols=28 Identities=29% Similarity=0.425 Sum_probs=16.6
Q ss_pred CCcHHHHHHHHhhHHHHHHHHHHHhchh
Q 040357 108 ADQLEQARMKLAGKAREMRDRAEQFGQQ 135 (144)
Q Consensus 108 ~~~ld~Ar~ri~d~A~~v~~ka~e~G~q 135 (144)
.+..+.+|.|+.+..++..+++++..++
T Consensus 26 ~~~~~~~r~~~~~~~~~a~~~~~~~~~~ 53 (94)
T PF05957_consen 26 GEKADEARDRAEEALDDARDRAEDAADQ 53 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666666655543
No 34
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=54.11 E-value=99 Score=23.80 Aligned_cols=14 Identities=7% Similarity=-0.071 Sum_probs=5.2
Q ss_pred hchhhhHHHHHHHH
Q 040357 61 CSPVLVPAVITVSL 74 (144)
Q Consensus 61 fSPVLVPAai~~~l 74 (144)
++|+..+....+.+
T Consensus 33 l~~~~s~~lg~~~l 46 (191)
T PF04156_consen 33 LGALISFILGIALL 46 (191)
T ss_pred hHHHHHHHHHHHHH
Confidence 33443333333333
No 35
>PRK04897 heat shock protein HtpX; Provisional
Probab=54.08 E-value=1e+02 Score=26.10 Aligned_cols=37 Identities=5% Similarity=-0.102 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcHHHHHHHHhhHHHHH
Q 040357 89 AISVLSWIYRYVTGGHPPGADQLEQARMKLAGKAREM 125 (144)
Q Consensus 89 als~lsW~y~y~rg~~p~g~~~ld~Ar~ri~d~A~~v 125 (144)
....-.|+.....+.+|..+++-.+-++++.+.++..
T Consensus 57 ~~~~~~~~~~~~~~a~~v~~~~~p~L~~~v~~la~~~ 93 (298)
T PRK04897 57 MIFQSTNVVMSMNHAREVTEEEAPELWHIVEDMAMVA 93 (298)
T ss_pred HHHhhHHHHHHhCCCEECChhhhHHHHHHHHHHHHHc
Confidence 3445567777777777777765555555555444433
No 36
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=54.04 E-value=36 Score=28.84 Aligned_cols=41 Identities=10% Similarity=0.013 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHhhhHHhhchhhhHHHHHHHHHHHHHHHh
Q 040357 40 SGLTMAGTVIALTIATPLLVICSPVLVPAVITVSLLIMGFLAS 82 (144)
Q Consensus 40 aGlTL~gtvigL~vaTPLfvifSPVLVPAai~~~l~~~Gfl~s 82 (144)
.+..+.+.++|+++- -.+++.|+-+++++++++.+.+--+-
T Consensus 36 l~~~~v~v~ig~l~~--~~~~~~i~gi~~g~l~am~vl~rra~ 76 (224)
T PF13829_consen 36 LGPIAVFVLIGLLFG--SWWYWLIIGILLGLLAAMIVLSRRAQ 76 (224)
T ss_pred HHHHHHHHHHHHHHc--cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556666665 44556666777777777766665543
No 37
>COG4818 Predicted membrane protein [Function unknown]
Probab=53.75 E-value=45 Score=25.38 Aligned_cols=49 Identities=22% Similarity=0.330 Sum_probs=30.0
Q ss_pred hhHHhhchhhhHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHHhcCC
Q 040357 56 PLLVICSPVLVPAVITVSLLIMGFLASGGFGVAA-ISVLSWIYRYVTGGH 104 (144)
Q Consensus 56 PLfvifSPVLVPAai~~~l~~~Gfl~sg~~glta-ls~lsW~y~y~rg~~ 104 (144)
--++.|+|+++=..++...=.-|-+.|+..++++ +-++.-|||-.||.+
T Consensus 37 QS~ltF~~l~~l~ill~~iP~Ig~lls~~v~l~a~iLwlv~mykAyrGe~ 86 (105)
T COG4818 37 QSFLTFLGLWLLIILLAFIPYIGWLLSGLVGLAAFILWLVCMYKAYRGER 86 (105)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHcCCe
Confidence 3455666666655555555454777777777543 344555788888854
No 38
>PF12153 CAP18_C: LPS binding domain of CAP18 (C terminal); InterPro: IPR022746 This entry represents the cathlecidin antimicrobial C-terminal peptides. The C terminus is cleaved from the cathlecidin precursor, and is approximately 30 amino acids in length with a helical structure. This entry is found in association with PF00666 from PFAM. The C terminus peptides possess antimicrobial activity by virtue of their binding to bacterial lipopolysaccharides [][].; GO: 0042742 defense response to bacterium; PDB: 1LYP_A 2LMF_A 2FBU_H 2FBS_N 2K6O_A 2FCG_F.
Probab=51.30 E-value=23 Score=21.24 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=20.6
Q ss_pred cHHHHHHHHhhHHHHHHHHHHHhc
Q 040357 110 QLEQARMKLAGKAREMRDRAEQFG 133 (144)
Q Consensus 110 ~ld~Ar~ri~d~A~~v~~ka~e~G 133 (144)
-+..++.+|.++.+.++||.|++=
T Consensus 3 ~lrk~~eKigeklkkIGQkIKDff 26 (28)
T PF12153_consen 3 FLRKGGEKIGEKLKKIGQKIKDFF 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356788999999999999999873
No 39
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=50.75 E-value=1.9e+02 Score=26.13 Aligned_cols=49 Identities=20% Similarity=0.282 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHhh--chhhhHHHHHHHHHHHHHHHh
Q 040357 34 GSLLVLSGLTMAGTVIALTIATPLLVIC--SPVLVPAVITVSLLIMGFLAS 82 (144)
Q Consensus 34 ~~LL~LaGlTL~gtvigL~vaTPLfvif--SPVLVPAai~~~l~~~Gfl~s 82 (144)
|..+-=+=-=+.||++|.+++.=+..+| +|++.-.++.+.+....+++.
T Consensus 43 G~~~~k~~~R~~GT~iGa~~~~~lv~~~~~~p~l~~~~lal~i~~c~~~~~ 93 (650)
T PF04632_consen 43 GASLSKGLYRLIGTLIGAAAGLLLVALFPQSPLLFLLALALWIGLCLYLSL 93 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333455555555544444344 777766665555555555443
No 40
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=50.02 E-value=1.3e+02 Score=23.75 Aligned_cols=12 Identities=25% Similarity=0.127 Sum_probs=5.1
Q ss_pred HHHHHHHhhHHH
Q 040357 112 EQARMKLAGKAR 123 (144)
Q Consensus 112 d~Ar~ri~d~A~ 123 (144)
++.|+.+.+.-.
T Consensus 71 ~~~~~~l~ea~~ 82 (199)
T PF10112_consen 71 EYIREILEEAKE 82 (199)
T ss_pred HHHHHHHHHHHH
Confidence 334444444433
No 41
>COG4709 Predicted membrane protein [Function unknown]
Probab=49.76 E-value=1.6e+02 Score=24.76 Aligned_cols=17 Identities=18% Similarity=0.526 Sum_probs=9.0
Q ss_pred hhHHHHHHHHHHHHHHH
Q 040357 82 SGGFGVAAISVLSWIYR 98 (144)
Q Consensus 82 sg~~gltals~lsW~y~ 98 (144)
+=+++....-...|.+|
T Consensus 160 gl~~~~~if~iv~~~~r 176 (195)
T COG4709 160 GLGLGIVIFAIVKYASR 176 (195)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33445555555666555
No 42
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=49.67 E-value=50 Score=24.94 Aligned_cols=12 Identities=17% Similarity=0.005 Sum_probs=5.9
Q ss_pred HHHHHHHHhcCC
Q 040357 93 LSWIYRYVTGGH 104 (144)
Q Consensus 93 lsW~y~y~rg~~ 104 (144)
+.-+|...||++
T Consensus 94 ~~i~y~a~rg~~ 105 (115)
T PF05915_consen 94 TRIAYYAWRGYK 105 (115)
T ss_pred HHHHHHHHcCCC
Confidence 334455556654
No 43
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=49.16 E-value=1e+02 Score=25.05 Aligned_cols=45 Identities=27% Similarity=0.259 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCCC-----cHHHHHHHHhhHHHHHHHHHHHhc
Q 040357 88 AAISVLSWIYRYVTGGHPPGAD-----QLEQARMKLAGKAREMRDRAEQFG 133 (144)
Q Consensus 88 tals~lsW~y~y~rg~~p~g~~-----~ld~Ar~ri~d~A~~v~~ka~e~G 133 (144)
.++...+|+.+.+|. ||-..| ++.+.-+||..+=+.++..++|--
T Consensus 58 l~~~~~~~~l~~~k~-~p~m~Ev~YvW~LKq~ln~I~rkl~~ik~aa~~~d 107 (165)
T PF11286_consen 58 LGLLLTSALLRQLKT-HPFMTEVYYVWQLKQLLNKIYRKLHKIKAAAEQGD 107 (165)
T ss_pred HHHHHHHHHHHHHcc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 344556777777764 554443 356667899999999988887543
No 44
>COG0600 TauC ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]
Probab=48.65 E-value=1.6e+02 Score=24.88 Aligned_cols=63 Identities=21% Similarity=0.291 Sum_probs=38.2
Q ss_pred HhhhHHhhchhhhHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHHhcCCCCCCCcHHHHHH
Q 040357 54 ATPLLVICSPVLVPAVITVSLLIMGFLASGGFGVAA-ISVLSWIYRYVTGGHPPGADQLEQARM 116 (144)
Q Consensus 54 aTPLfvifSPVLVPAai~~~l~~~Gfl~sg~~glta-ls~lsW~y~y~rg~~p~g~~~ld~Ar~ 116 (144)
.-|++.++-|+=.-|-+-+.++.-|+--..-+.++. .+.+-=+.|-..|-+-+-+|.+|.+|.
T Consensus 98 l~P~i~~l~~iP~lA~~Pl~ilwfG~g~~s~i~i~~~~~ffpi~int~~Gvr~v~~~~~~~ar~ 161 (258)
T COG0600 98 LDPLVQVLRPIPPLALAPLAILWFGIGETSKIVIAVLGAFFPILINTLDGVRSVDPDLLELART 161 (258)
T ss_pred HhHHHHHHhcCCHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 357777777764444444555666665555565665 444455667777766556676776663
No 45
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=47.93 E-value=22 Score=24.99 Aligned_cols=28 Identities=25% Similarity=0.412 Sum_probs=21.6
Q ss_pred CCcHHHHHHHHhhHHHHHHHHHHHhchh
Q 040357 108 ADQLEQARMKLAGKAREMRDRAEQFGQQ 135 (144)
Q Consensus 108 ~~~ld~Ar~ri~d~A~~v~~ka~e~G~q 135 (144)
.+.++.+|.++.|..+++.+++++...+
T Consensus 37 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 64 (94)
T PF05957_consen 37 EEALDDARDRAEDAADQAREQAREAAEQ 64 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568888888888888888887776643
No 46
>PRK00523 hypothetical protein; Provisional
Probab=45.28 E-value=95 Score=22.18 Aligned_cols=21 Identities=5% Similarity=0.069 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhcCCCCCCCcH
Q 040357 91 SVLSWIYRYVTGGHPPGADQL 111 (144)
Q Consensus 91 s~lsW~y~y~rg~~p~g~~~l 111 (144)
-+--|+-||++...|...|.+
T Consensus 25 iark~~~k~l~~NPpine~mi 45 (72)
T PRK00523 25 VSKKMFKKQIRENPPITENMI 45 (72)
T ss_pred HHHHHHHHHHHHCcCCCHHHH
Confidence 345678889986544444433
No 47
>PF02987 LEA_4: Late embryogenesis abundant protein; InterPro: IPR004238 Different types of late embryogenesis abundant (LEA) proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress. The function of these proteins is unknown. This entry represents a repeat characteristic of some LEA proteins, including LEA3 [, ].
Probab=44.96 E-value=29 Score=21.57 Aligned_cols=23 Identities=26% Similarity=0.228 Sum_probs=11.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHhc
Q 040357 111 LEQARMKLAGKAREMRDRAEQFG 133 (144)
Q Consensus 111 ld~Ar~ri~d~A~~v~~ka~e~G 133 (144)
...++....|++++++|++.|..
T Consensus 8 a~e~~d~a~~ka~e~kd~a~eKa 30 (44)
T PF02987_consen 8 ASEAKDAAKEKAGEAKDAAAEKA 30 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555554444
No 48
>COG4425 Predicted membrane protein [Function unknown]
Probab=44.57 E-value=74 Score=30.37 Aligned_cols=62 Identities=23% Similarity=0.380 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHhhhHHhhchhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCC
Q 040357 39 LSGLTMAGTVIALTIATPLLVICSPVLVPAVITVSLLIMGFLASGGFGVAAISVLSWIYRYVTGGHP 105 (144)
Q Consensus 39 LaGlTL~gtvigL~vaTPLfvifSPVLVPAai~~~l~~~Gfl~sg~~gltals~lsW~y~y~rg~~p 105 (144)
+-+++-+|+++|.++. -.=.+|-|.|=.-.+--+..||. .++|-++--.+-|+.+|++-..|
T Consensus 46 ~~~~s~tG~~~g~vff---~~sLTPSLLPr~~l~qgv~sgf~--~A~Gy~~gv~~~wl~~y~elp~~ 107 (588)
T COG4425 46 LRSLSATGLLMGTVFF---WASLTPSLLPRPWLFQGVLSGFS--LAAGYGAGVFLHWLWRYLELPES 107 (588)
T ss_pred HHhhccchHHHHHHHH---HHhcCccccCchHHHHHHHHHHH--HHhhhHHHHHHHHHHHHhhCCCC
Confidence 4455666666665542 23357888887777766677774 45555566778999999987655
No 49
>cd03513 CrtW_beta-carotene-ketolase Beta-carotene ketolase/oxygenase (CrtW, also known as CrtO), the carotenoid astaxanthin biosynthetic enzyme, initially catalyzes the addition of two keto groups to carbons C4 and C4' of beta-carotene. Carotenoids are important natural pigments produced by many microorganisms and plants. Astaxanthin is reported to be an antioxidant, an anti-cancer agent, and an immune system stimulant. A number of bacteria and green algae can convert beta-carotene into astaxanthin by using several ketocarotenoids as intermediates and CrtW and a beta-carotene hydroxylase (CrtZ). CrtW initially converts beta-carotene to canthaxanthin via echinenone, and CrtZ initially mediates the conversion of beta-carotene to zeaxanthin via beta-cryptoxanthin. After a few more intermediates are formed, CrtW and CrtZ act in combination to produce astaxanthin. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. Th
Probab=44.01 E-value=74 Score=26.28 Aligned_cols=21 Identities=38% Similarity=0.572 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHhhhHHhh
Q 040357 41 GLTMAGTVIALTIATPLLVIC 61 (144)
Q Consensus 41 GlTL~gtvigL~vaTPLfvif 61 (144)
||++++.++++-+++=+..++
T Consensus 1 gl~~a~~i~~~w~~~~~~~~~ 21 (225)
T cd03513 1 GLTLAGLIIAAWLASHVHALF 21 (225)
T ss_pred ChhHHHHHHHHHHHHHHHHHH
Confidence 455666666555555444443
No 50
>TIGR01597 PYST-B Plasmodium yoelii subtelomeric family PYST-B. This model represents a paralogous family of Plasmodium yoelii genes preferentially located in the subtelomeric regions of the chromosomes. There are no obvious homologs to these genes in any other organism.
Probab=43.18 E-value=60 Score=28.16 Aligned_cols=11 Identities=27% Similarity=0.646 Sum_probs=7.6
Q ss_pred HHHHHHHHHHh
Q 040357 91 SVLSWIYRYVT 101 (144)
Q Consensus 91 s~lsW~y~y~r 101 (144)
-...|-|+|++
T Consensus 234 ~~~~~~~qy~~ 244 (255)
T TIGR01597 234 YWSIWRFQYVK 244 (255)
T ss_pred HHHHHHHHHHH
Confidence 34568888875
No 51
>PRK11026 ftsX cell division ABC transporter subunit FtsX; Provisional
Probab=42.91 E-value=1.6e+02 Score=25.24 Aligned_cols=25 Identities=4% Similarity=-0.219 Sum_probs=18.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHhcCCC
Q 040357 81 ASGGFGVAAISVLSWIYRYVTGGHP 105 (144)
Q Consensus 81 ~sg~~gltals~lsW~y~y~rg~~p 105 (144)
...++.++.+++..=+.||+|...|
T Consensus 284 ~~~~~~ig~l~s~~s~~r~L~~~~~ 308 (309)
T PRK11026 284 LLVCSMIGWVAAWLATVQHLRRFTP 308 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3445566777888888999987655
No 52
>PRK01315 putative inner membrane protein translocase component YidC; Provisional
Probab=42.65 E-value=86 Score=27.66 Aligned_cols=31 Identities=19% Similarity=0.266 Sum_probs=26.5
Q ss_pred HHHHhhhHHhhchhhhHHHHHHHHHHHHHHH
Q 040357 51 LTIATPLLVICSPVLVPAVITVSLLIMGFLA 81 (144)
Q Consensus 51 L~vaTPLfvifSPVLVPAai~~~l~~~Gfl~ 81 (144)
+....|++++|+=+-+|+++.+--++.++++
T Consensus 217 M~~imPim~~~~~~~fPaGL~LYW~~snl~s 247 (329)
T PRK01315 217 LLYLFPLMFLVSGIAFPVGVLFYWLTSNVWT 247 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556899999999999999999999888765
No 53
>PF01970 TctA: Tripartite tricarboxylate transporter TctA family; InterPro: IPR002823 Members of this prokaryotic family have no known function. Members are predicted to be integral membrane proteins and are similar to a protein in a tartrate utilisation region (TAR) of Agrobacterium vitis a common pathogen of grapevine. Most grapevine strains utilise tartrate, an abundant compound in grapevine [].
Probab=42.49 E-value=31 Score=31.06 Aligned_cols=30 Identities=30% Similarity=0.495 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHhhhHHhhchhhhHHHH
Q 040357 41 GLTMAGTVIALTIATPLLVICSPVLVPAVI 70 (144)
Q Consensus 41 GlTL~gtvigL~vaTPLfvifSPVLVPAai 70 (144)
++...++++|-+++.+++++|+|.+-|.+.
T Consensus 93 ~~a~~~S~~G~~is~~~l~~~a~~la~~a~ 122 (419)
T PF01970_consen 93 RLAAIGSFIGGLISAILLILFAPPLAPFAL 122 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888888888899999888887654
No 54
>TIGR02805 exbB2 tonB-system energizer ExbB, group 2. Members of this protein family appear to be the ExbB protein of an ExbBD proton-transporting membrane complex that, by means of TonB, energizes transport by TonB-dependent receptors. Note that this family represents one of at least two distinct groups TolQ homologs designated ExbB - see also TIGR02797. Each group associates with a distinct group of ExbD proteins, and a single species may have two ExbB/ExbD/TonB systems.
Probab=41.87 E-value=1.3e+02 Score=23.82 Aligned_cols=57 Identities=21% Similarity=0.136 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhhhHHhhchhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcC
Q 040357 44 MAGTVIALTIATPLLVICSPVLVPAVITVSLLIMGFLASGGFGVAAISVLSWIYRYVTGG 103 (144)
Q Consensus 44 L~gtvigL~vaTPLfvifSPVLVPAai~~~l~~~Gfl~sg~~gltals~lsW~y~y~rg~ 103 (144)
|.|||+|++.+.--+=.. .--=|..+.-++..+=..+..++.++ -...-.|||++.+
T Consensus 70 LLGTV~GmI~~F~~lg~~-g~~~~~~la~GIs~ALitTa~GL~VA--Ipali~yn~l~~r 126 (138)
T TIGR02805 70 LLGTVIGIMVTFYQMGHG-GGIDPSVIMLGLSLALKATALGLLVA--IPSLVFYNALLRK 126 (138)
T ss_pred HHHHHHHHHHHHHHHHhc-CCCCHHHHHhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 468888888754443221 11235555544444333333333333 3333468888653
No 55
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=41.72 E-value=2.9e+02 Score=25.51 Aligned_cols=57 Identities=14% Similarity=0.241 Sum_probs=36.8
Q ss_pred HHHHHHHhhhHHhhchhh--hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-HhcCCCCCCCcHHH
Q 040357 48 VIALTIATPLLVICSPVL--VPAVITVSLLIMGFLASGGFGVAAISVLSWIYRY-VTGGHPPGADQLEQ 113 (144)
Q Consensus 48 vigL~vaTPLfvifSPVL--VPAai~~~l~~~Gfl~sg~~gltals~lsW~y~y-~rg~~p~g~~~ld~ 113 (144)
..-+.+..|++++|+-+. +|+++.+--++.++.+ -.-.|+.+| ++-..|.-++--++
T Consensus 227 m~~m~~~~Pim~~~~g~~~~~PaallLYWv~snlwt---------l~Qq~i~~~~l~~~~P~~~~~~~~ 286 (429)
T PRK00247 227 LIVMAILAPIFPLSLGLTGPFPTAIALYWVANNLWT---------LIQNIIMYLILERKYPLTDEFKEH 286 (429)
T ss_pred HHHHHHHhHHHHHHHHHhccchHHHHHHHHHhhHHH---------HHHHHHHHHHHHHhcCCCcchHHH
Confidence 344456788877665444 7999999988888876 445665554 34456665554443
No 56
>TIGR00439 ftsX putative protein insertion permease FtsX. FtsX is an integral membrane protein encoded in the same operon as signal recognition particle docking protein FtsY and FtsE. It belongs to a family of predicted permeases and may play a role in the insertion of proteins required for potassium transport, cell division, and other activities. FtsE is a hydrophilic nucleotide-binding protein that associates with the inner membrane by means of association with FtsX.
Probab=41.29 E-value=1.5e+02 Score=25.43 Aligned_cols=27 Identities=4% Similarity=-0.119 Sum_probs=18.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHhcCCC
Q 040357 79 FLASGGFGVAAISVLSWIYRYVTGGHP 105 (144)
Q Consensus 79 fl~sg~~gltals~lsW~y~y~rg~~p 105 (144)
.+...+..+..+++..=+.||+|--.|
T Consensus 282 ~l~~~g~~lg~lgs~~s~~r~Lr~~~~ 308 (309)
T TIGR00439 282 LLLGFCIALGVVGAWLATTQHLLCFKA 308 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 344445566677777778899987655
No 57
>PRK01844 hypothetical protein; Provisional
Probab=40.46 E-value=1.3e+02 Score=21.50 Aligned_cols=21 Identities=14% Similarity=0.319 Sum_probs=12.8
Q ss_pred HHHHHHHHHHhcCCCCCCCcH
Q 040357 91 SVLSWIYRYVTGGHPPGADQL 111 (144)
Q Consensus 91 s~lsW~y~y~rg~~p~g~~~l 111 (144)
-+--|+-||++...|...|.+
T Consensus 24 ~ark~~~k~lk~NPpine~mi 44 (72)
T PRK01844 24 IARKYMMNYLQKNPPINEQML 44 (72)
T ss_pred HHHHHHHHHHHHCCCCCHHHH
Confidence 345678889986545444433
No 58
>TIGR00930 2a30 K-Cl cotransporter.
Probab=40.18 E-value=2.1e+02 Score=28.63 Aligned_cols=43 Identities=21% Similarity=0.220 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCC
Q 040357 65 LVPAVITVSLLIMGFLASGGFGVAAISVLSWIYRYVTGGHPPG 107 (144)
Q Consensus 65 LVPAai~~~l~~~Gfl~sg~~gltals~lsW~y~y~rg~~p~g 107 (144)
|+|..-++..++.-|+.+.-..+.++.+..=+|.|+.-++|..
T Consensus 501 ~~sllG~l~c~~lmf~i~w~~ali~~~i~~~ly~~~~~~~~~~ 543 (953)
T TIGR00930 501 WLSLLGASLCCAIMFLISWWAALVAMVIALFLYKYVTYKKPDV 543 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Confidence 4555444444455555555555555666666677776666653
No 59
>PRK03072 heat shock protein HtpX; Provisional
Probab=40.17 E-value=2.3e+02 Score=23.96 Aligned_cols=32 Identities=6% Similarity=-0.174 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhcCCCCCCCcHHHHHHHHhhHH
Q 040357 91 SVLSWIYRYVTGGHPPGADQLEQARMKLAGKA 122 (144)
Q Consensus 91 s~lsW~y~y~rg~~p~g~~~ld~Ar~ri~d~A 122 (144)
....|+.+...|.++..+++-.+-++.+.+.+
T Consensus 49 ~~s~~~~~~~~~~~~v~~~~~p~L~~~v~~la 80 (288)
T PRK03072 49 WNSDKLALRAMHAQPVSEVQAPAMYRIVRELS 80 (288)
T ss_pred HHhHHHHHHhcCCEECChhhhHHHHHHHHHHH
Confidence 34466666666777766654333333433333
No 60
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=39.64 E-value=2e+02 Score=24.66 Aligned_cols=81 Identities=20% Similarity=0.325 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHhhchhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHH
Q 040357 39 LSGLTMAGTVIALTIATPLLVICSPVLVPAVITVSLLIMGFLASGGFGVAAISVLSWIYRYVTGGHPPGADQLEQARMKL 118 (144)
Q Consensus 39 LaGlTL~gtvigL~vaTPLfvifSPVLVPAai~~~l~~~Gfl~sg~~gltals~lsW~y~y~rg~~p~g~~~ld~Ar~ri 118 (144)
-.|..+.|..+|+-+.-..+--....+.|..+.+.+.. .......|+++..++- |..+.-=.-+
T Consensus 28 ~~~q~ilG~~iG~~~t~~~l~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~l~r~~~~-----d~~TA~~~~~ 91 (318)
T PF05145_consen 28 NAGQAILGVSIGSSFTPEVLAQLASWWPPMLLLLVVTL-----------LLSLVGAWLLRRISGL-----DRATAFFASM 91 (318)
T ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHcCC-----ChhHHHHHcC
Confidence 45677788888888866666666667776554443332 1123445666555442 3344444455
Q ss_pred hhHHHHHHHHHHHhchh
Q 040357 119 AGKAREMRDRAEQFGQQ 135 (144)
Q Consensus 119 ~d~A~~v~~ka~e~G~q 135 (144)
-..+++|---++|+|.+
T Consensus 92 PGg~s~m~~la~~~gad 108 (318)
T PF05145_consen 92 PGGLSEMVALAEEYGAD 108 (318)
T ss_pred CccHHHHHHHHHHcCCC
Confidence 55667777777888764
No 61
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=39.53 E-value=3.9 Score=28.62 Aligned_cols=27 Identities=22% Similarity=0.384 Sum_probs=3.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcHHHHHHH
Q 040357 89 AISVLSWIYRYVTGGHPPGADQLEQARMK 117 (144)
Q Consensus 89 als~lsW~y~y~rg~~p~g~~~ld~Ar~r 117 (144)
.+-++.++||+. ++..|+-.+|+-|..
T Consensus 26 ilLIlf~iyR~r--kkdEGSY~l~e~K~s 52 (64)
T PF01034_consen 26 ILLILFLIYRMR--KKDEGSYDLDEPKPS 52 (64)
T ss_dssp -----------S--------SS--S----
T ss_pred HHHHHHHHHHHH--hcCCCCccCCCCCcc
Confidence 344567888875 345678888887743
No 62
>TIGR01190 ccmB heme exporter protein CcmB. This model describes the cyt c biogenesis protein encoded by ccmB in bacteria. Bacterial c-type cytochromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome C.
Probab=39.50 E-value=2e+02 Score=23.80 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=17.8
Q ss_pred HhhchhhhHHHHHHHHHHHHHHHh
Q 040357 59 VICSPVLVPAVITVSLLIMGFLAS 82 (144)
Q Consensus 59 vifSPVLVPAai~~~l~~~Gfl~s 82 (144)
++.-|+.||..|...-++...+.+
T Consensus 158 lL~lPl~vPvLIfg~~a~~~~~~G 181 (211)
T TIGR01190 158 LLVLPLYIPVLIFGSAAIQAAAEG 181 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 666799999888777777665553
No 63
>PRK05812 secD preprotein translocase subunit SecD; Reviewed
Probab=39.34 E-value=1.4e+02 Score=27.62 Aligned_cols=33 Identities=15% Similarity=0.182 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhhhHHhhchhhhHHHHHHHHHH
Q 040357 44 MAGTVIALTIATPLLVICSPVLVPAVITVSLLI 76 (144)
Q Consensus 44 L~gtvigL~vaTPLfvifSPVLVPAai~~~l~~ 76 (144)
+..++.-++.+.|||++-++.+-|.++++.+.+
T Consensus 435 l~s~lTTlia~l~L~~~g~g~i~~fAitl~iGi 467 (498)
T PRK05812 435 LDSNITTLIAAIILYALGTGPVKGFAVTLGIGI 467 (498)
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 344555556778888888788888777665533
No 64
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=39.24 E-value=67 Score=28.20 Aligned_cols=45 Identities=27% Similarity=0.554 Sum_probs=29.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHhcCCCCCCCcHHHHHH---HHhhHHHHHHHHHHHhc
Q 040357 80 LASGGFGVAAISVLSWIYRYVTGGHPPGADQLEQARM---KLAGKAREMRDRAEQFG 133 (144)
Q Consensus 80 l~sg~~gltals~lsW~y~y~rg~~p~g~~~ld~Ar~---ri~d~A~~v~~ka~e~G 133 (144)
|-+|-.|+..++...|.|=| .+.++||. ..+|.-.++++|.++..
T Consensus 21 LvGGp~Gl~ml~AgA~Y~~y---------Q~~EQAr~~A~~fA~~ld~~~~kl~~Ms 68 (301)
T PF06120_consen 21 LVGGPPGLVMLGAGAWYYFY---------QNAEQARQEAIEFADSLDELKEKLKEMS 68 (301)
T ss_pred hhcchHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhhHHHHHHHHhcC
Confidence 34566666667777786666 34677775 45666667777777665
No 65
>PRK10404 hypothetical protein; Provisional
Probab=39.17 E-value=33 Score=25.28 Aligned_cols=26 Identities=15% Similarity=0.174 Sum_probs=15.9
Q ss_pred CcHHHHHHHHhhHHHHHHHHHHHhch
Q 040357 109 DQLEQARMKLAGKAREMRDRAEQFGQ 134 (144)
Q Consensus 109 ~~ld~Ar~ri~d~A~~v~~ka~e~G~ 134 (144)
+.++.+|.|+.|..+.+.+++|+..+
T Consensus 45 ~~L~~ar~~l~~~~~~~~~~~k~aa~ 70 (101)
T PRK10404 45 KALDDVKKRVSQASDSYYYRAKQAVY 70 (101)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34666666666666666666666554
No 66
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=38.64 E-value=1.4e+02 Score=20.98 Aligned_cols=23 Identities=9% Similarity=0.284 Sum_probs=10.4
Q ss_pred cHHHHHHHHhhHHHHHHHHHHHh
Q 040357 110 QLEQARMKLAGKAREMRDRAEQF 132 (144)
Q Consensus 110 ~ld~Ar~ri~d~A~~v~~ka~e~ 132 (144)
..+..+.++.+.-..+.+.-++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~ 98 (181)
T PF12729_consen 76 ERQEIEKEIDEARAEIDEALEEY 98 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444
No 67
>PF13886 DUF4203: Domain of unknown function (DUF4203)
Probab=38.27 E-value=2e+02 Score=22.74 Aligned_cols=55 Identities=24% Similarity=0.251 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhhhHHh-------hchhhhHHHHHHHHH
Q 040357 21 HQVVKAATAVTAGGSLLVL--------SGLTMAGTVIALTIATPLLVI-------CSPVLVPAVITVSLL 75 (144)
Q Consensus 21 ~qvl~~~tl~~~g~~LL~L--------aGlTL~gtvigL~vaTPLfvi-------fSPVLVPAai~~~l~ 75 (144)
.+....++.+..|..+..+ .|+.+.|...|+.++.-++.. ..|.+++..+...+.
T Consensus 53 ~~~~~~v~g~~~G~i~g~~~~~~~~~~~glf~~G~~~G~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 122 (210)
T PF13886_consen 53 NLGASVVAGVLGGIILGLLWWAFLIYSVGLFLVGLLLGFLLAMWILSLPPGGLIIPHPDWVFWVLFLCLA 122 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCCchhHHHHHHHHH
Confidence 3344444555555554444 788889999999888665433 356677766654443
No 68
>PF14017 DUF4233: Protein of unknown function (DUF4233)
Probab=38.13 E-value=77 Score=23.69 Aligned_cols=43 Identities=26% Similarity=0.290 Sum_probs=28.6
Q ss_pred chhhhHHHHH--HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCC
Q 040357 62 SPVLVPAVIT--VSLLIMGFLASGGFGVAAISVLSWIYRYVTGGH 104 (144)
Q Consensus 62 SPVLVPAai~--~~l~~~Gfl~sg~~gltals~lsW~y~y~rg~~ 104 (144)
-|-=+++..+ +.+..+||+.-..+.+..+....|.|-+..|++
T Consensus 55 rpwa~~~g~~lQv~~i~~g~v~p~m~vvG~iF~~~W~~~l~lg~~ 99 (107)
T PF14017_consen 55 RPWAYWLGWVLQVLLIAGGFVHPAMFVVGVIFAAVWWYALYLGRR 99 (107)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444433 345566777777777788888999999877654
No 69
>PF14019 DUF4235: Protein of unknown function (DUF4235)
Probab=37.66 E-value=76 Score=22.16 Aligned_cols=23 Identities=30% Similarity=0.664 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhcCCCC-CCCcHHH
Q 040357 91 SVLSWIYRYVTGGHPP-GADQLEQ 113 (144)
Q Consensus 91 s~lsW~y~y~rg~~p~-g~~~ld~ 113 (144)
-++.=.++..+|+.|| .++..|+
T Consensus 18 k~~~~~W~~~tg~~~P~~~~d~~~ 41 (78)
T PF14019_consen 18 KVFEQVWKKVTGREPPKDPDDPDR 41 (78)
T ss_pred HHHHHHHHHHcCCCCCCCCCCccc
Confidence 4556677899999888 6665544
No 70
>PF01618 MotA_ExbB: MotA/TolQ/ExbB proton channel family MotA family only; InterPro: IPR002898 This family groups together integral membrane proteins that appear to be involved in translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flagellar motor that uses a proton gradient to generate rotational motion in the flagellar []. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.; GO: 0008565 protein transporter activity, 0006810 transport, 0016020 membrane
Probab=37.57 E-value=36 Score=25.36 Aligned_cols=19 Identities=26% Similarity=0.385 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHhhhHHhh
Q 040357 43 TMAGTVIALTIATPLLVIC 61 (144)
Q Consensus 43 TL~gtvigL~vaTPLfvif 61 (144)
.|..|+.||+++.|.++++
T Consensus 102 Al~tT~~GL~vai~~~~~~ 120 (139)
T PF01618_consen 102 ALITTAYGLVVAIPALPFY 120 (139)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4667778888877776543
No 71
>COG0811 TolQ Biopolymer transport proteins [Intracellular trafficking and secretion]
Probab=37.16 E-value=36 Score=27.71 Aligned_cols=19 Identities=32% Similarity=0.438 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHhhhHHh
Q 040357 42 LTMAGTVIALTIATPLLVI 60 (144)
Q Consensus 42 lTL~gtvigL~vaTPLfvi 60 (144)
..|..|++||++|.|-+++
T Consensus 165 eAL~aTA~GL~vAIPAvi~ 183 (216)
T COG0811 165 EALIATAIGLFVAIPAVVA 183 (216)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3477888888888876654
No 72
>COG2148 WcaJ Sugar transferases involved in lipopolysaccharide synthesis [Cell envelope biogenesis, outer membrane]
Probab=36.40 E-value=30 Score=29.26 Aligned_cols=18 Identities=28% Similarity=0.515 Sum_probs=12.1
Q ss_pred hHHhhchhhhHHHHHHHH
Q 040357 57 LLVICSPVLVPAVITVSL 74 (144)
Q Consensus 57 LfvifSPVLVPAai~~~l 74 (144)
.+++|||++.+.++++-+
T Consensus 52 ~L~v~sP~~l~iai~ikl 69 (226)
T COG2148 52 GLLLLSPVMLIIALAIKL 69 (226)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 345678888887766644
No 73
>PRK03982 heat shock protein HtpX; Provisional
Probab=36.27 E-value=2.6e+02 Score=23.41 Aligned_cols=33 Identities=6% Similarity=-0.130 Sum_probs=20.0
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHhhHHHHH
Q 040357 93 LSWIYRYVTGGHPPGADQLEQARMKLAGKAREM 125 (144)
Q Consensus 93 lsW~y~y~rg~~p~g~~~ld~Ar~ri~d~A~~v 125 (144)
-.|+.+.+.+.+|..+++-.+-++++.+.+++.
T Consensus 49 ~~~i~~~~~~~~~l~~~~~p~L~~~v~~la~~~ 81 (288)
T PRK03982 49 SDKIVLASYNARIVSEEEAPELYRIVERLAERA 81 (288)
T ss_pred hHHHHHHhcCCEECChhhhHHHHHHHHHHHHHc
Confidence 367777777777766655444555555554444
No 74
>PF12811 BaxI_1: Bax inhibitor 1 like ; InterPro: IPR010539 Bax inhibitor-1 (BI1) family contains six known genes in human. Some members of BI1 family have been proved to play important roles in cell death [, ].
Probab=35.72 E-value=2.9e+02 Score=23.93 Aligned_cols=29 Identities=21% Similarity=0.454 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHhhhHHhhchhh-hHHHHHH
Q 040357 42 LTMAGTVIALTIATPLLVICSPVL-VPAVITV 72 (144)
Q Consensus 42 lTL~gtvigL~vaTPLfvifSPVL-VPAai~~ 72 (144)
+.+.|.++||++ -|+..|.|.. .|+.+.+
T Consensus 90 ~~~~g~i~glvl--~lv~~F~~~~~sp~l~~~ 119 (274)
T PF12811_consen 90 LAIVGAIGGLVL--ALVISFKRKVWSPALAPI 119 (274)
T ss_pred HHHHHHHHHHHH--HHHHHhCCccCChHHHHH
Confidence 456777777766 5777887766 6665443
No 75
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=34.95 E-value=2.3e+02 Score=25.13 Aligned_cols=19 Identities=26% Similarity=0.240 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 040357 31 TAGGSLLVLSGLTMAGTVI 49 (144)
Q Consensus 31 ~~g~~LL~LaGlTL~gtvi 49 (144)
.+|.++|.+.|+..+-++.
T Consensus 180 svGSA~LT~IGLaAAKaAA 198 (295)
T TIGR01478 180 ALSSALLGNIGIAAAKTAA 198 (295)
T ss_pred ccHHHHHHHHHHHHHHHHH
Confidence 4566667777776665443
No 76
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=33.68 E-value=2.1e+02 Score=21.69 Aligned_cols=10 Identities=20% Similarity=0.278 Sum_probs=5.9
Q ss_pred HHHHHHHhcC
Q 040357 94 SWIYRYVTGG 103 (144)
Q Consensus 94 sW~y~y~rg~ 103 (144)
.|+-|+-|||
T Consensus 68 ~~l~rlKRGr 77 (111)
T TIGR03750 68 KLLARLKRGK 77 (111)
T ss_pred HHHHHHHcCC
Confidence 4666666663
No 77
>PF06796 NapE: Periplasmic nitrate reductase protein NapE; InterPro: IPR010649 This family consists of several bacterial periplasmic nitrate reductase NapE proteins. Seven genes, napKEFDABC, encoding the periplasmic nitrate reductase system were cloned from the denitrifying phototrophic bacterium Rhodobacter sphaeroides. NapE is thought to be a transmembrane protein [].
Probab=33.08 E-value=1.2e+02 Score=20.63 Aligned_cols=14 Identities=21% Similarity=0.759 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHhc
Q 040357 89 AISVLSWIYRYVTG 102 (144)
Q Consensus 89 als~lsW~y~y~rg 102 (144)
+-..+.|+|.-+-|
T Consensus 39 ~YGF~VWm~Q~~~G 52 (56)
T PF06796_consen 39 GYGFIVWMYQIFFG 52 (56)
T ss_pred HHHHHHHHHHHHcC
Confidence 34557899999876
No 78
>PF12420 DUF3671: Protein of unknown function ; InterPro: IPR022139 This domain family is found in eukaryotes, and is typically between 96 and 116 amino acids in length.
Probab=33.07 E-value=1.5e+02 Score=21.93 Aligned_cols=19 Identities=21% Similarity=0.158 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHHHHHHh
Q 040357 83 GGFGVAAISVLSWIYRYVT 101 (144)
Q Consensus 83 g~~gltals~lsW~y~y~r 101 (144)
-.+...++..++++|-+.+
T Consensus 81 f~~i~~~i~ll~iiYi~~K 99 (104)
T PF12420_consen 81 FFIIFITIILLVIIYIFIK 99 (104)
T ss_pred hhHHHHHHHHHHHHHHHHh
Confidence 3345566777788877653
No 79
>PF03379 CcmB: CcmB protein; InterPro: IPR003544 Within mitochondria and bacteria, a family of related proteins is involved in the assembly of periplasmic c-type cytochromes: these include CycK [], CcmF [,], NrfE [] and CcbS []. These proteins may play a role in guidance of apocytochromes and haem groups for their covalent linkage by the cytochrome-c-haem lyase. Members of the family are probably integral membrane proteins, with up to 16 predicted transmembrane (TM) helices. The gene products of the hel and ccl loci have been shown to be required specifically for the biogenesis of c-type cytochromes in the Gram-negative photosynthetic bacterium Rhodobacter capsulatus []. Genetic and molecular analyses show that the hel locus contains at least 4 genes, helA, helB, helC and orf52. HelA is similar to the ABC transporters and helA, helB, and helC are proposed to encode an export complex []. It is believed that the hel-encoded proteins are required for the export of haem to the periplasm, where it is subsequently ligated to the c-type apocytochromes []. However, while CcmB and CcmC have the potential to interact with CcmA, the 3 gene products probably associating to form a complex with (CcmA)2-CcmB-CcmC stoichiometry, the substrate for the putative CcmABC-transporter is probably neither haem nor c-type apocytochromes []. Hydropathy analysis suggests the presence of 6 TM domains.; GO: 0015232 heme transporter activity, 0015886 heme transport, 0017004 cytochrome complex assembly, 0016020 membrane
Probab=32.96 E-value=2.6e+02 Score=22.52 Aligned_cols=47 Identities=30% Similarity=0.371 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHH------hhhHHhhchhhhHHHHHHHHHHHHHHHh
Q 040357 36 LLVLSGLTMAGTVIALTIA------TPLLVICSPVLVPAVITVSLLIMGFLAS 82 (144)
Q Consensus 36 LL~LaGlTL~gtvigL~va------TPLfvifSPVLVPAai~~~l~~~Gfl~s 82 (144)
++.-.|++..||+.+-... .=+-++.-|+.+|..|...-+....+.+
T Consensus 132 ~lgt~gl~~igtl~aal~~~~r~~~~Ll~lL~lPl~iPvli~~~~~t~~~~~g 184 (215)
T PF03379_consen 132 LLGTLGLAAIGTLLAALAAGARGREILLPLLLLPLLIPVLIFAVQATTAALTG 184 (215)
T ss_pred HHHhHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444667777777664443 1234566799999888776666654443
No 80
>PF03597 CcoS: Cytochrome oxidase maturation protein cbb3-type; InterPro: IPR004714 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO). Expression of cytochrome cbb3 oxidase allows human pathogens to colonise anoxic tissues and agronomically important diazotrophs to sustain nitrogen fixation []. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP), the ccoNOQP operon is always found close to a second gene cluster, known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex, possibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase.
Probab=32.71 E-value=84 Score=20.21 Aligned_cols=27 Identities=26% Similarity=0.642 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHH
Q 040357 86 GVAAISVLSWIYRYVTGGHPPGADQLEQARMKL 118 (144)
Q Consensus 86 gltals~lsW~y~y~rg~~p~g~~~ld~Ar~ri 118 (144)
|+.++..+.|-.| +|.- |.+|...+||
T Consensus 14 ~~~~l~~f~Wavk--~GQf----dD~e~~a~ri 40 (45)
T PF03597_consen 14 GLIALAAFLWAVK--SGQF----DDLEGPAHRI 40 (45)
T ss_pred HHHHHHHHHHHHc--cCCC----CCCcchHhhh
Confidence 4455678889887 5543 4455555565
No 81
>TIGR02762 TraL_TIGR type IV conjugative transfer system protein TraL. This protein is part of the type IV secretion system for conjugative plasmid transfer. The function of the TraL protein is unknown.
Probab=32.64 E-value=1.6e+02 Score=21.13 Aligned_cols=14 Identities=21% Similarity=0.268 Sum_probs=8.0
Q ss_pred HHHHHHHHhcCCCC
Q 040357 93 LSWIYRYVTGGHPP 106 (144)
Q Consensus 93 lsW~y~y~rg~~p~ 106 (144)
+.+.+|+++..+|.
T Consensus 52 ~~~~lrr~K~g~~~ 65 (95)
T TIGR02762 52 IWKRLRRIKGGEGE 65 (95)
T ss_pred HHHHHHHHHcCCCh
Confidence 33446677666653
No 82
>PF03773 DUF318: Predicted permease; InterPro: IPR005524 This family of predicted integral membrane proteins.
Probab=32.44 E-value=2.7e+02 Score=23.47 Aligned_cols=21 Identities=29% Similarity=0.670 Sum_probs=14.7
Q ss_pred HHhhchhhhHHHHHHHHHHHH
Q 040357 58 LVICSPVLVPAVITVSLLIMG 78 (144)
Q Consensus 58 fvifSPVLVPAai~~~l~~~G 78 (144)
|++.||++-|..+.......|
T Consensus 89 Fl~a~p~~n~~~~~~~~~~lg 109 (307)
T PF03773_consen 89 FLLASPLLNPIVLLLTWAALG 109 (307)
T ss_pred HHHhhHHhhHHHHHHHHHHhC
Confidence 677778888877776655544
No 83
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=31.63 E-value=1.9e+02 Score=20.46 Aligned_cols=13 Identities=31% Similarity=0.631 Sum_probs=8.9
Q ss_pred HHHHHHHHHHhcC
Q 040357 91 SVLSWIYRYVTGG 103 (144)
Q Consensus 91 s~lsW~y~y~rg~ 103 (144)
-.++|+|-+.-.+
T Consensus 67 ~~l~~~Yv~~An~ 79 (91)
T PF04341_consen 67 WVLTWLYVRRANR 79 (91)
T ss_pred HHHHHHHHHHHcc
Confidence 5678888876543
No 84
>PRK13023 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=31.46 E-value=2.5e+02 Score=27.64 Aligned_cols=32 Identities=22% Similarity=0.229 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhhhHHhhchhhhHHHHHHHHHH
Q 040357 45 AGTVIALTIATPLLVICSPVLVPAVITVSLLI 76 (144)
Q Consensus 45 ~gtvigL~vaTPLfvifSPVLVPAai~~~l~~ 76 (144)
.+++..++.+.|||+.-++.+-|.++++.+.+
T Consensus 381 ~s~lTTlia~lpL~~~g~g~ik~FAitliiGi 412 (758)
T PRK13023 381 DANLTTLIAALVLFLLGSGTVHGFALTVAIGI 412 (758)
T ss_pred HHHHHHHHHHHHHHHHhchhHHHHHHHHHHHH
Confidence 34444556677888888888888776655443
No 85
>COG1289 Predicted membrane protein [Function unknown]
Probab=31.22 E-value=3.7e+02 Score=25.20 Aligned_cols=74 Identities=18% Similarity=0.285 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhHHhhchh----hhHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHH
Q 040357 44 MAGTVIALTIATPLLVICSPV----LVPAVITVSLLIMGF-LASGGFGVAAISVLSWIYRYVTGGHPPGADQLEQARMKL 118 (144)
Q Consensus 44 L~gtvigL~vaTPLfvifSPV----LVPAai~~~l~~~Gf-l~sg~~gltals~lsW~y~y~rg~~p~g~~~ld~Ar~ri 118 (144)
..||++|+.++..++.+.-|. |.-..+..++...++ +..-.+...+++...++-+-+-|..+ .++.-.|.
T Consensus 407 i~GTllg~~~g~~~l~~~~p~~~~~l~~l~~~~~l~~~~~~~~~~~~a~~~i~l~v~~~~~l~~~~~-----~~~~~~r~ 481 (674)
T COG1289 407 ILGTLLGLLLGLLVLLLLLPLIPGLLLLLLLAALLFAAGIRLAKYRLATLGITLLVLFLVGLLGSNG-----PDYDLPRF 481 (674)
T ss_pred HHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHcccch-----hhhhHHHH
Q ss_pred hhHH
Q 040357 119 AGKA 122 (144)
Q Consensus 119 ~d~A 122 (144)
.|+.
T Consensus 482 ~d~~ 485 (674)
T COG1289 482 LDTL 485 (674)
T ss_pred HHHH
No 86
>PF06081 DUF939: Bacterial protein of unknown function (DUF939); InterPro: IPR010343 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=31.06 E-value=2.3e+02 Score=21.34 Aligned_cols=16 Identities=13% Similarity=0.000 Sum_probs=12.1
Q ss_pred CCcHHHHHHHHhhHHH
Q 040357 108 ADQLEQARMKLAGKAR 123 (144)
Q Consensus 108 ~~~ld~Ar~ri~d~A~ 123 (144)
++..+++-+|+.|+.=
T Consensus 114 ~~~~~~~~~r~l~t~i 129 (141)
T PF06081_consen 114 SDSFSYALNRVLLTLI 129 (141)
T ss_pred CccHHHHHHHHHHHHH
Confidence 4567789999988753
No 87
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=30.84 E-value=1.5e+02 Score=24.22 Aligned_cols=58 Identities=22% Similarity=0.363 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHhhchhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 040357 32 AGGSLLVLSGLTMAGTVIALTIATPLLVICSPVLVPAVITVSLLIMGFLASGGFGVAAISVLSWIY 97 (144)
Q Consensus 32 ~g~~LL~LaGlTL~gtvigL~vaTPLfvifSPVLVPAai~~~l~~~Gfl~sg~~gltals~lsW~y 97 (144)
.+|.+|...|+.+.-..+...+ -+.|++-+..- .++...+|+.+..+.+..+ ++.|++
T Consensus 188 ~~G~llmf~G~~~~~~~l~~l~------~~~P~lg~l~~-~~~~~~~~~~s~~lsl~~I-a~aW~~ 245 (248)
T PF07787_consen 188 FIGWLLMFIGFFLLFSPLYTLV------DWIPLLGNLVG-FGLFLVAFIISFSLSLLTI-ALAWLF 245 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------hhhceeechhh-hHHHHHHHHHHHHHHHHHH-HHhhee
Confidence 5566666667776655543332 23444443221 2222233555555554443 456764
No 88
>TIGR02973 nitrate_rd_NapE periplasmic nitrate reductase, NapE protein. NapE, homologous to TorE (TIGR02972), is a membrane protein of unknown function that is part of the periplasmic nitrate reductase system; it may be part of the enzyme complex. The periplasmic nitrate reductase allows for nitrate respiration in anaerobic conditions.
Probab=30.49 E-value=1.5e+02 Score=19.21 Aligned_cols=15 Identities=20% Similarity=0.731 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHhc
Q 040357 88 AAISVLSWIYRYVTG 102 (144)
Q Consensus 88 tals~lsW~y~y~rg 102 (144)
++-..+.|+|.-+.|
T Consensus 25 ~~YGF~vWm~Q~~~G 39 (42)
T TIGR02973 25 GGYGFAVWMYQILAG 39 (42)
T ss_pred HHHHHHHHHHHHhcC
Confidence 334557899998865
No 89
>PRK13022 secF preprotein translocase subunit SecF; Reviewed
Probab=30.45 E-value=3e+02 Score=23.35 Aligned_cols=28 Identities=11% Similarity=0.202 Sum_probs=18.4
Q ss_pred HHHHHHHHhhhHHhhchhhhHHHHHHHH
Q 040357 47 TVIALTIATPLLVICSPVLVPAVITVSL 74 (144)
Q Consensus 47 tvigL~vaTPLfvifSPVLVPAai~~~l 74 (144)
++..++...|+++.-+|.+-|.+++...
T Consensus 235 slTTl~~~l~L~~~g~~~i~~fa~~l~~ 262 (289)
T PRK13022 235 SLTTLLVVLALYLFGGGTLHDFALALLI 262 (289)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 3444455677777777888887765544
No 90
>PRK15127 multidrug efflux system protein AcrB; Provisional
Probab=30.06 E-value=86 Score=31.22 Aligned_cols=59 Identities=14% Similarity=0.191 Sum_probs=34.3
Q ss_pred HHHHhhhHHhh---chhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCCCCcHHHHH
Q 040357 51 LTIATPLLVIC---SPVLVPAVITVSLLIMGFLASGGFGVAAISVLSWIYRYVTGGHPPGADQLEQAR 115 (144)
Q Consensus 51 L~vaTPLfvif---SPVLVPAai~~~l~~~Gfl~sg~~gltals~lsW~y~y~rg~~p~g~~~ld~Ar 115 (144)
.+...|+.+.. ++.+-|.++++ +.|++.|-.+-+..+-++.|+.+ .+.-...+.++++.
T Consensus 983 i~gllPl~l~~G~g~~~~~plai~i---i~GL~~St~ltL~~vP~ly~~~~---~~~~~~~~~~~~~~ 1044 (1049)
T PRK15127 983 ILGVMPLVISSGAGSGAQNAVGTGV---MGGMVTATVLAIFFVPVFFVVVR---RRFSRKNEDIEHSH 1044 (1049)
T ss_pred HHHHHHHHhcCCCCHHHhcCchhhh---hHHHHHHHHHHHHHHHHHHHHHH---HHhhcccccccccc
Confidence 34457888764 45788866654 44666666666766666666543 22222244555543
No 91
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=29.96 E-value=4.7e+02 Score=25.70 Aligned_cols=79 Identities=13% Similarity=0.222 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHhhhHHh---hchhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-hcCCCCCCCcHHHHHH
Q 040357 41 GLTMAGTVIALTIATPLLVI---CSPVLVPAVITVSLLIMGFLASGGFGVAAISVLSWIYRYV-TGGHPPGADQLEQARM 116 (144)
Q Consensus 41 GlTL~gtvigL~vaTPLfvi---fSPVLVPAai~~~l~~~Gfl~sg~~gltals~lsW~y~y~-rg~~p~g~~~ld~Ar~ 116 (144)
.-.+++|+.-++++.|++.+ ....+-|.++++.++...-+ +.++..+=+++.++ +.++.....+.....+
T Consensus 433 ~~i~~stlTti~vF~Pl~f~~G~~g~~~~~l~~~v~~al~~Sl------lval~~~P~l~~~~l~~~~~~~~~~~~~~~~ 506 (1021)
T PF00873_consen 433 PPILASTLTTIAVFLPLLFMPGIAGQFFRPLALTVIIALIASL------LVALTLVPALAALFLKPKKKSSKKRFFSKFD 506 (1021)
T ss_dssp HHHHHHHHHHHHHTCGGGGSBHHHHHHHHHHHHHHHHHHHHHH------HHHHTTHHHHHHHCS----TT-CCCHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhcCCchHHHHHHHHHHHHHHHHHHH------HHHHHhhhhhhhhhhcccccccccccccccc
Confidence 34456667777889999752 23455555554444432222 23344455555544 3222222224555555
Q ss_pred HHhhHHHHH
Q 040357 117 KLAGKAREM 125 (144)
Q Consensus 117 ri~d~A~~v 125 (144)
|+-++..+.
T Consensus 507 ~~~~~l~~~ 515 (1021)
T PF00873_consen 507 RFFDRLQRG 515 (1021)
T ss_dssp HHHHHHHHH
T ss_pred ccccccccc
Confidence 555554443
No 92
>PRK10263 DNA translocase FtsK; Provisional
Probab=29.80 E-value=4e+02 Score=28.32 Aligned_cols=21 Identities=24% Similarity=0.229 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhhhHHhhchhh
Q 040357 45 AGTVIALTIATPLLVICSPVL 65 (144)
Q Consensus 45 ~gtvigL~vaTPLfvifSPVL 65 (144)
.|=+||..+..+|.-+|+-+-
T Consensus 142 gGGIIG~lLs~lL~~LfG~vG 162 (1355)
T PRK10263 142 SGGVIGSLLSTTLQPLLHSSG 162 (1355)
T ss_pred ccchHHHHHHHHHHHHHhHHH
Confidence 478889888888888887643
No 93
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=29.72 E-value=1.1e+02 Score=20.36 Aligned_cols=27 Identities=22% Similarity=0.517 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHH
Q 040357 86 GVAAISVLSWIYRYVTGGHPPGADQLEQARMKL 118 (144)
Q Consensus 86 gltals~lsW~y~y~rg~~p~g~~~ld~Ar~ri 118 (144)
|+.++..+.|-.| +|.- |.+|...+||
T Consensus 15 ~~~~l~~f~Wavk--~GQf----DDle~~a~ri 41 (51)
T TIGR00847 15 GGVGLVAFLWSLK--SGQY----DDLKGAAWRI 41 (51)
T ss_pred HHHHHHHHHHHHc--cCCC----CCCccHHHHH
Confidence 4556778889887 5543 4455555565
No 94
>TIGR01097 PhnE phosphonate ABC transporter, permease protein PhnE. Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context).
Probab=29.63 E-value=2.9e+02 Score=22.02 Aligned_cols=26 Identities=8% Similarity=0.138 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHhc-CCCCCCCcHHHHH
Q 040357 90 ISVLSWIYRYVTG-GHPPGADQLEQAR 115 (144)
Q Consensus 90 ls~lsW~y~y~rg-~~p~g~~~ld~Ar 115 (144)
+....+++|.++. -+-...+..|.||
T Consensus 135 i~~~~~~~~~~~~~l~~i~~~~~eaa~ 161 (250)
T TIGR01097 135 FHTVGFLGKLFAEAIEEVDPGPVEALR 161 (250)
T ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHH
Confidence 3344555665543 2333445555554
No 95
>PF02397 Bac_transf: Bacterial sugar transferase; InterPro: IPR003362 This entry represents a conserved region from a number of different bacterial sugar transferases, involved in diverse biosynthesis pathways. Examples include galactosyl-P-P-undecaprenol synthetase (2.7.8.6 from EC), which transfers galatose-1-phosphate to the lipid precursor undecaprenol phosphate in the first steps of O-polysaccharide biosynthesis; UDP-galactose-lipid carrier transferase, which is involved in the biosynthesis of amylovoran; and galactosyl transferase CpsD, which is essential for assembly of the group B Streptococci (GBS) type III capsular polysaccharide.
Probab=29.28 E-value=62 Score=26.17 Aligned_cols=24 Identities=29% Similarity=0.539 Sum_probs=16.7
Q ss_pred HHHHhhhHHhhchhhhHHHHHHHH
Q 040357 51 LTIATPLLVICSPVLVPAVITVSL 74 (144)
Q Consensus 51 L~vaTPLfvifSPVLVPAai~~~l 74 (144)
++++..+++++||+++..++++-+
T Consensus 6 i~~a~~~li~~~Pl~l~iai~i~l 29 (187)
T PF02397_consen 6 IVLALLLLILLSPLFLIIAILIKL 29 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666778888888776666655
No 96
>TIGR01998 PTS-II-BC-nag PTS system, N-acetylglucosamine-specific IIBC component. This model represents the combined B and C domains of the PTS transport system enzyme II specific for N-acetylglucosamine transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, N-acetylglucosamine-specific IIABC component". This family is most closely related to the glucose-specific PTS enzymes.
Probab=28.82 E-value=1.8e+02 Score=26.63 Aligned_cols=41 Identities=12% Similarity=0.058 Sum_probs=27.0
Q ss_pred HHHHHHHhhhHHhhchhhhHHHHHHHHHHHHHHHhhHHHHH
Q 040357 48 VIALTIATPLLVICSPVLVPAVITVSLLIMGFLASGGFGVA 88 (144)
Q Consensus 48 vigL~vaTPLfvifSPVLVPAai~~~l~~~Gfl~sg~~glt 88 (144)
++.+.++.|+-+++.|||-+..-.+.-....+-.+|.+|..
T Consensus 152 iit~li~~~l~~~~~~iwp~i~~~I~~~~~~i~~~g~~g~~ 192 (476)
T TIGR01998 152 IMAGFVGLVLAALLGYVWPTLYGGIVAFGESISGLGALGAG 192 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 44556678888888999977776666555444445555544
No 97
>PRK09776 putative diguanylate cyclase; Provisional
Probab=28.65 E-value=5.2e+02 Score=24.62 Aligned_cols=18 Identities=17% Similarity=0.294 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHhhhHHhh
Q 040357 44 MAGTVIALTIATPLLVIC 61 (144)
Q Consensus 44 L~gtvigL~vaTPLfvif 61 (144)
..|.++|..+.+|+++..
T Consensus 141 ~~~~~~g~l~~~p~~l~~ 158 (1092)
T PRK09776 141 VLSEAIGMLALVPLGLLF 158 (1092)
T ss_pred HHHHHHHHHHHhhHhhhc
Confidence 467888999999988875
No 98
>COG5346 Predicted membrane protein [Function unknown]
Probab=27.73 E-value=1.1e+02 Score=24.31 Aligned_cols=9 Identities=44% Similarity=0.401 Sum_probs=5.1
Q ss_pred CcccCCcch
Q 040357 1 MAEHYQPLQ 9 (144)
Q Consensus 1 MA~~~~~~~ 9 (144)
|||+.|.++
T Consensus 61 MAekEQahr 69 (136)
T COG5346 61 MAEKEQAHR 69 (136)
T ss_pred HHHHHHHHH
Confidence 666555544
No 99
>PF13072 DUF3936: Protein of unknown function (DUF3936)
Probab=27.54 E-value=23 Score=22.58 Aligned_cols=21 Identities=38% Similarity=0.577 Sum_probs=18.0
Q ss_pred HHhhHHHHHHHHHHHhchhhh
Q 040357 117 KLAGKAREMRDRAEQFGQQQI 137 (144)
Q Consensus 117 ri~d~A~~v~~ka~e~G~q~~ 137 (144)
++..+|-++.+|-|||+.++.
T Consensus 11 ~lvGKAWeIr~~Lkey~k~~~ 31 (38)
T PF13072_consen 11 ILVGKAWEIRAKLKEYGKQFG 31 (38)
T ss_pred EEEehHHHHHHHHHHHHHhhh
Confidence 567899999999999998764
No 100
>TIGR02972 TMAO_torE trimethylamine N-oxide reductase system, TorE protein. Members of this small, apparent transmembrane protein are designated TorE and occur in operons for the trimethylamine N-oxide (TMAO) reductase system. Members are closely related to the NapE protein of the related periplasmic nitrate reductase system. It may be that TorE is an integral membrane subunit of a complex with the reductase TorA.
Probab=27.37 E-value=1.7e+02 Score=19.31 Aligned_cols=15 Identities=13% Similarity=0.505 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHhc
Q 040357 88 AAISVLSWIYRYVTG 102 (144)
Q Consensus 88 tals~lsW~y~y~rg 102 (144)
.+-..+.|+|.-+.|
T Consensus 30 g~YGF~vWm~Q~~~G 44 (47)
T TIGR02972 30 GGYGFIIWMIQAFGG 44 (47)
T ss_pred HHHHHHHHHHHHHcC
Confidence 344557899998855
No 101
>PTZ00370 STEVOR; Provisional
Probab=27.35 E-value=3.1e+02 Score=24.41 Aligned_cols=18 Identities=39% Similarity=0.577 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 040357 31 TAGGSLLVLSGLTMAGTV 48 (144)
Q Consensus 31 ~~g~~LL~LaGlTL~gtv 48 (144)
.+|.++|.+.|+..+-++
T Consensus 180 sVGSafLT~IGLaAAKaA 197 (296)
T PTZ00370 180 SLGSALLTLIGLAAAKAA 197 (296)
T ss_pred ccHHHHHHHHHHHHHHHH
Confidence 345566666666666543
No 102
>TIGR02790 nickel_nikC nickel ABC transporter, permease subunit NikC. This family consists of the NikC family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikB. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases.
Probab=26.69 E-value=3.5e+02 Score=22.00 Aligned_cols=38 Identities=26% Similarity=0.435 Sum_probs=17.2
Q ss_pred hhhHHHHHHHHHHHHHHHhhHH-HHHHHHHHHH--HHHHHhc
Q 040357 64 VLVPAVITVSLLIMGFLASGGF-GVAAISVLSW--IYRYVTG 102 (144)
Q Consensus 64 VLVPAai~~~l~~~Gfl~sg~~-gltals~lsW--~y~y~rg 102 (144)
--+|..+...+... ++..|-. .+.+++..+| .+|++|+
T Consensus 105 ~~iP~l~l~l~l~~-~~g~g~~~~il~l~l~~~~~~~r~~r~ 145 (258)
T TIGR02790 105 LSFPTIILSLAIVG-ILGPGLENVIIAIVLVHWAWYARMVRG 145 (258)
T ss_pred HHhhHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555544444332 2222221 2345555555 5666665
No 103
>PRK10631 p-hydroxybenzoic acid efflux subunit AaeB; Provisional
Probab=26.42 E-value=6e+02 Score=24.59 Aligned_cols=44 Identities=18% Similarity=0.252 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHhh--chhhhHHHHHHHHHH
Q 040357 33 GGSLLVLSGLTMAGTVIALTIATPLLVIC--SPVLVPAVITVSLLI 76 (144)
Q Consensus 33 g~~LL~LaGlTL~gtvigL~vaTPLfvif--SPVLVPAai~~~l~~ 76 (144)
.|..+-=+---+.||++|-+++.=+..+| .|++.=.++.+.+..
T Consensus 58 ~G~v~~K~~~Ri~GTliGa~~~l~l~~~f~~~p~l~~l~l~lWig~ 103 (652)
T PRK10631 58 SGAIRYRGMLRIIGTFIGCIAALVIIIATIRAPLLMILLCCIWAGF 103 (652)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 34444444445667777776666666666 477655444444333
No 104
>TIGR03003 ectoine_ehuD ectoine/hydroxyectoine ABC transporter, permease protein EhuD. Members of this family are presumed to act as permease subunits of ectoine ABC transporters. Operons containing this gene also contain the other genes of the ABC transporter and typically are found next to either ectoine utilization or ectoine biosynthesis operons.
Probab=26.05 E-value=3.1e+02 Score=21.16 Aligned_cols=31 Identities=19% Similarity=0.129 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHH--HHHhc-CCCCCCCcHHHHHH
Q 040357 86 GVAAISVLSWIY--RYVTG-GHPPGADQLEQARM 116 (144)
Q Consensus 86 gltals~lsW~y--~y~rg-~~p~g~~~ld~Ar~ 116 (144)
++-+++...+.| +.+|+ -....+++.|.||.
T Consensus 89 ~iial~l~~~~~~~~~~r~~l~~v~~~~~eaA~a 122 (212)
T TIGR03003 89 GVLGLGLHYATYAAEVYRAGIEAVPRGQWEAATA 122 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHHH
Confidence 344555555444 44444 23445677888775
No 105
>COG4459 NapE Periplasmic nitrate reductase system, NapE component [Energy production and conversion]
Probab=25.95 E-value=1.9e+02 Score=20.14 Aligned_cols=19 Identities=26% Similarity=0.940 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCC
Q 040357 89 AISVLSWIYRYVTGGHPPGAD 109 (144)
Q Consensus 89 als~lsW~y~y~rg~~p~g~~ 109 (144)
+-..+.|||..+-| |||+.
T Consensus 42 ~yGFiVWM~QiifG--PPGpp 60 (62)
T COG4459 42 GYGFIVWMFQIIFG--PPGPP 60 (62)
T ss_pred chhHHHHHHHHHhC--CCCCC
Confidence 34568899999876 66664
No 106
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=25.88 E-value=91 Score=27.61 Aligned_cols=39 Identities=21% Similarity=0.083 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhHHhhchhh
Q 040357 27 ATAVTAGGSLLVLSG-LTMAGTVIALTIATPLLVICSPVL 65 (144)
Q Consensus 27 ~tl~~~g~~LL~LaG-lTL~gtvigL~vaTPLfvifSPVL 65 (144)
+....+.++-|+|+| ++....++|++++.-+.++|.|+.
T Consensus 171 ~l~~ll~~~Wlllsg~~s~~~l~~G~v~~~~v~~~~~~~~ 210 (357)
T PRK12652 171 ALFGASFGFYLLLGDPLYWFDLLTGAVTALIVAVLLAHVT 210 (357)
T ss_pred HHHHHHHHHHHHHcCcCCHHHHHHHHHHHHHHHHHhcccc
Confidence 334566777788888 888888888888877888887753
No 107
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=25.80 E-value=1.7e+02 Score=20.33 Aligned_cols=20 Identities=5% Similarity=0.185 Sum_probs=11.4
Q ss_pred HHHHHHHHHhcCCCCCCCcH
Q 040357 92 VLSWIYRYVTGGHPPGADQL 111 (144)
Q Consensus 92 ~lsW~y~y~rg~~p~g~~~l 111 (144)
+--++-||++...|...|.+
T Consensus 18 ar~~~~k~l~~NPpine~mi 37 (64)
T PF03672_consen 18 ARKYMEKQLKENPPINEKMI 37 (64)
T ss_pred HHHHHHHHHHHCCCCCHHHH
Confidence 45567778876444444433
No 108
>PRK14726 bifunctional preprotein translocase subunit SecD/SecF; Provisional
Probab=25.33 E-value=3.2e+02 Score=27.35 Aligned_cols=37 Identities=19% Similarity=0.196 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHhhhHHhhchhhhHHHHHHHHHHH
Q 040357 41 GLTMAGTVIALTIATPLLVICSPVLVPAVITVSLLIM 77 (144)
Q Consensus 41 GlTL~gtvigL~vaTPLfvifSPVLVPAai~~~l~~~ 77 (144)
.-++.+++.-++.+.|||++=+..+-|.++++.+.+.
T Consensus 471 ~~Il~s~lTTlia~lpL~~~g~~~ikgFAvtl~igii 507 (855)
T PRK14726 471 ATIVDANVTILIAAVILFFLGSGAVRGFAVTLAVGIL 507 (855)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHH
Confidence 3445566666788899999988888888777766543
No 109
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=25.17 E-value=5.6e+02 Score=24.55 Aligned_cols=91 Identities=14% Similarity=0.145 Sum_probs=57.0
Q ss_pred ccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhchhhhHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 040357 14 QSRQPRSHQVVKAATAVTAGGSLLVLSGLTMAGTVIALTIATPLLVICSPVLVPAVITVSLLIMGFLASGGFGVAAISVL 93 (144)
Q Consensus 14 ~~~~Pss~qvl~~~tl~~~g~~LL~LaGlTL~gtvigL~vaTPLfvifSPVLVPAai~~~l~~~Gfl~sg~~gltals~l 93 (144)
.+..|+..++.-.+.....+.+||...|+.-.=|+. .+.+.|..++ ..+.+ .|..
T Consensus 438 ~~~pp~~~r~~W~v~~~~ia~~lL~~ggl~aLqt~~-ii~alPF~~v-----------ll~~~-------------~sl~ 492 (537)
T COG1292 438 GEDPPRWVRVFWGVLIGLIAAVLLLIGGLEALQTAA-IITALPFSLV-----------LLVMM-------------FSLI 492 (537)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH-HHHHccHHHH-----------HHHHH-------------HHHH
Confidence 567788888888888889999999999965444433 2445565443 22332 2444
Q ss_pred HHHHHHHhc-----CCCCCCCcHHHHHHHHhhHHHHHHHHH
Q 040357 94 SWIYRYVTG-----GHPPGADQLEQARMKLAGKAREMRDRA 129 (144)
Q Consensus 94 sW~y~y~rg-----~~p~g~~~ld~Ar~ri~d~A~~v~~ka 129 (144)
=|+.++.+. .++..+++.++.+++..|.++...+..
T Consensus 493 k~l~~d~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 533 (537)
T COG1292 493 KDLKQDYADRKKRLEALMSPPRLRAGLRFKGDVAEPAMEEV 533 (537)
T ss_pred HHHHhhHHhhhhhhhhhccccchhHHHHhhhcccccchhhh
Confidence 555555422 235556777777777777665555433
No 110
>PRK12933 secD preprotein translocase subunit SecD; Reviewed
Probab=25.10 E-value=2.9e+02 Score=26.61 Aligned_cols=44 Identities=16% Similarity=0.173 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHhhhHHhhchhhhHHHHHHHHHHHHHHHhhHH
Q 040357 42 LTMAGTVIALTIATPLLVICSPVLVPAVITVSLLIMGFLASGGF 85 (144)
Q Consensus 42 lTL~gtvigL~vaTPLfvifSPVLVPAai~~~l~~~Gfl~sg~~ 85 (144)
-++.+++.-++++.|||.+=+..+=|.++++.+.+..-+.++-+
T Consensus 541 ~IldanlTTlia~lpL~~~Ggg~ikgFAvTL~iGIl~S~ftAi~ 584 (604)
T PRK12933 541 TIFDANFTTMITAVVLYSIGNGPIQGFALTLGLGLLTSMFTGIF 584 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHH
Confidence 45667777888999999998887778777766655444333333
No 111
>PF05745 CRPA: Chlamydia 15 kDa cysteine-rich outer membrane protein (CRPA); InterPro: IPR008436 Chlamydia is a genus of bacteria, which causes the most common bacterial sexually transmitted diseases. They are obligate intracellular bacterial pathogens. Members of this genus lack a peptidoglycan layer, but as a substitute, it has been proposed that they have several cysteine rich membrane proteins. This includes the major outer membrane protein (MOMP). These form disulphide bonds to provide rigidity to the cell wall. The alignment of the amino acid sequences of the MOMP from various serovars of Chlamydia show that they have between seven and ten cysteine residues; seven of which are highly conserved []. The MOMP has been the focus of efforts to produce a vaccine for Chlamydia trachomatis []. The 15 kDa cysteine-rich protein in this entry is a multi-pass outer membrane protein. They are associated with the differentiation of reticulate bodies (RBs) into elementary bodies (EBs) []. They immunolocalise to the inclusion membrane, which is the membrane that surrounds the intracellular parasite. These proteins are recognised by CD8+ T cells in both human and mouse infections, suggesting they gain access to the host cytoplasm.; GO: 0019867 outer membrane
Probab=25.03 E-value=1.7e+02 Score=23.48 Aligned_cols=39 Identities=26% Similarity=0.412 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhchhhhHHHHHHH
Q 040357 30 VTAGGSLLVLSGLTMAGTVIALTIATPLLVICSPVLVPAVITVS 73 (144)
Q Consensus 30 ~~~g~~LL~LaGlTL~gtvigL~vaTPLfvifSPVLVPAai~~~ 73 (144)
+.+-|++|+.+|++|+=++=+=.-..+.++ ++||.|-.-
T Consensus 68 l~VlGiiLviagl~l~fil~~~lg~naf~~-----~IPAviGlv 106 (150)
T PF05745_consen 68 LVVLGIILVIAGLALTFILHSQLGNNAFLF-----IIPAVIGLV 106 (150)
T ss_pred HHHHHHHHHHHHHHHHhhehhhhcCccchh-----hHHHHHHHH
Confidence 455667788899998866666555566543 578776443
No 112
>PRK14402 membrane protein; Provisional
Probab=24.94 E-value=3.1e+02 Score=22.51 Aligned_cols=35 Identities=20% Similarity=0.359 Sum_probs=22.7
Q ss_pred HHHHhhhHHhhchhhhHHHHHHHHHH---HHHHHhhHH
Q 040357 51 LTIATPLLVICSPVLVPAVITVSLLI---MGFLASGGF 85 (144)
Q Consensus 51 L~vaTPLfvifSPVLVPAai~~~l~~---~Gfl~sg~~ 85 (144)
.+.+.-.++.++|.+....+.+++++ +...+-|.+
T Consensus 107 vAt~~G~~l~l~p~~~l~~~~v~~i~~~itr~vSl~Si 144 (198)
T PRK14402 107 VATSFGTLLFLDPVLALLTFPVGVACMWLTRFVSAGSM 144 (198)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566677888888887777665 455555553
No 113
>PRK09946 hypothetical protein; Provisional
Probab=24.87 E-value=1.2e+02 Score=26.53 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=21.2
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHH
Q 040357 92 VLSWIYRYVTGGHPPGADQLEQARM 116 (144)
Q Consensus 92 ~lsW~y~y~rg~~p~g~~~ld~Ar~ 116 (144)
.-.|+||+|..++|-|.+..|-.+.
T Consensus 13 ~~~~~yRWFlr~fp~Gg~Y~~v~dA 37 (270)
T PRK09946 13 VGAVMYRWFLRHFPRGGSYADIHHA 37 (270)
T ss_pred cchhHHHHHHHhCCCCCcHHHHHHH
Confidence 4579999999999999998877664
No 114
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=24.79 E-value=2.6e+02 Score=19.77 Aligned_cols=38 Identities=18% Similarity=0.231 Sum_probs=21.9
Q ss_pred HHHHHHHHHhcCC--CCCCCcHHHHH-HHHhhHHHHHHHHH
Q 040357 92 VLSWIYRYVTGGH--PPGADQLEQAR-MKLAGKAREMRDRA 129 (144)
Q Consensus 92 ~lsW~y~y~rg~~--p~g~~~ld~Ar-~ri~d~A~~v~~ka 129 (144)
+..|++.|.+.+. ..|-++-|+.+ ..+.++|+.+.|+-
T Consensus 18 ap~wl~lHY~~k~~~~~~ls~~d~~~L~~L~~~a~rm~eRI 58 (75)
T TIGR02976 18 APLWLILHYRSKRKTAASLSTDDQALLQELYAKADRLEERI 58 (75)
T ss_pred HHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4578887766442 33334444444 56666777776654
No 115
>COG4537 ComGC Competence protein ComGC [Intracellular trafficking and secretion]
Probab=24.73 E-value=59 Score=24.89 Aligned_cols=28 Identities=32% Similarity=0.503 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHhhhHHhhchhhhH
Q 040357 40 SGLTMAGTVIALTIATPLLVICSPVLVP 67 (144)
Q Consensus 40 aGlTL~gtvigL~vaTPLfvifSPVLVP 67 (144)
.|.||.--+|-|.+..-|+++|-|=+.-
T Consensus 12 kgFTLvEMLiVLlIISiLlLl~iPNltK 39 (107)
T COG4537 12 KGFTLVEMLIVLLIISILLLLFIPNLTK 39 (107)
T ss_pred ccccHHHHHHHHHHHHHHHHHHccchhh
Confidence 4778999999999999999999998765
No 116
>COG2020 STE14 Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=24.45 E-value=3.5e+02 Score=21.27 Aligned_cols=64 Identities=22% Similarity=0.115 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHhhchhhh---------------------H--HHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 040357 38 VLSGLTMAGTVIALTIATPLLVICSPVLV---------------------P--AVITVSLLIMGFLASGGFGVAAISVLS 94 (144)
Q Consensus 38 ~LaGlTL~gtvigL~vaTPLfvifSPVLV---------------------P--Aai~~~l~~~Gfl~sg~~gltals~ls 94 (144)
...|+.+....+.+........-.+ ..+ | .+.....+..+++.+.-.++..+..+.
T Consensus 70 ~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~LVttG~Y~~VRHP~Y~~~~l~~~g~~~~~~~~~~l~~~~~~~ 148 (187)
T COG2020 70 VGLGLLLVGLGLALRLWAMRTLGRS-WTVSVKARKGHELVTTGPYSIVRHPIYLGLLLFALGTGLLLGSLWALLIFVVLV 148 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCC-CCcccCCCCCCeeEecCCcceecCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4566666666666666666677776 222 1 355666677778888899999999999
Q ss_pred HHHHHHhc
Q 040357 95 WIYRYVTG 102 (144)
Q Consensus 95 W~y~y~rg 102 (144)
|.++++|-
T Consensus 149 ~~~~~~~i 156 (187)
T COG2020 149 ALLFLFRI 156 (187)
T ss_pred HHHHHHHh
Confidence 99987764
No 117
>PF05532 CsbD: CsbD-like; InterPro: IPR008462 CsbD is a bacterial general stress response protein. It's expression is mediated by sigma-B, an alternative sigma factor []. The role of CsbD in stress response is unclear.; PDB: 1YWW_A 1RYK_A.
Probab=24.36 E-value=84 Score=20.50 Aligned_cols=23 Identities=35% Similarity=0.396 Sum_probs=15.9
Q ss_pred CcHHHHHHHHhhHHHHHHHHHHH
Q 040357 109 DQLEQARMKLAGKAREMRDRAEQ 131 (144)
Q Consensus 109 ~~ld~Ar~ri~d~A~~v~~ka~e 131 (144)
-+.|++..++.+++.+++|++++
T Consensus 31 G~~~q~~G~~q~~~g~~kd~~~~ 53 (53)
T PF05532_consen 31 GKAEQAKGKAQEKAGDAKDAAKD 53 (53)
T ss_dssp TSHHHHHHHHHHHT---HHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhcC
Confidence 35788888888888888888764
No 118
>TIGR02797 exbB tonB-system energizer ExbB. This model describes ExbB proteins, part of the MotA/TolQ/ExbB protein family. The paired proteins MotA and MotB, TolQ and TolR, and ExbB and ExbD harness the proton-motive force to drive the flagellar motor, energize the Tol-Pal system, or energize TonB, respectively. Tol-Pal and TonB are both active at the outer membrane. Genomes may have many different TonB-dependent receptors, of which many of those characterized are involved in siderophore transport across the outer membrane.
Probab=24.29 E-value=64 Score=26.10 Aligned_cols=20 Identities=35% Similarity=0.514 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHhhhHHhhc
Q 040357 43 TMAGTVIALTIATPLLVICS 62 (144)
Q Consensus 43 TL~gtvigL~vaTPLfvifS 62 (144)
.|..|+.||.+|.|-.+.++
T Consensus 166 ALitTA~GL~VAIPAli~yn 185 (211)
T TIGR02797 166 ALLATAIGLVAAIPAVVIYN 185 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 47789999999999876553
No 119
>TIGR01104 V_PPase vacuolar-type H(+)-translocating pyrophosphatase. This model describes proton pyrophosphatases from eukaryotes (predominantly plants), archaea and bacteria. It is an integral membrane protein and is suggested to have about 15 membrane spanning domains. Proton translocating inorganic pyrophosphatase, like H(+)-ATPase, acidifies the vacuoles and is pivotal to the vacuolar secondary active transport systems in plants.
Probab=23.81 E-value=1.6e+02 Score=28.99 Aligned_cols=37 Identities=14% Similarity=0.222 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHhhHHH
Q 040357 86 GVAAISVLSWIYRYVTGGHPPGADQLEQARMKLAGKAR 123 (144)
Q Consensus 86 gltals~lsW~y~y~rg~~p~g~~~ld~Ar~ri~d~A~ 123 (144)
++.++..-.|+++++.. +|+|.++|.+--+.|+|.|+
T Consensus 11 ~~~gl~~a~~~~~~v~~-~~~G~~~M~~Ia~~I~eGA~ 47 (697)
T TIGR01104 11 AVIGIAYAVLQWVWVSR-VKLGTAKMAEIQQAISEGAT 47 (697)
T ss_pred HHHHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHHHHHH
Confidence 45556667788888874 45576666555555555554
No 120
>COG1422 Predicted membrane protein [Function unknown]
Probab=23.46 E-value=4.5e+02 Score=22.10 Aligned_cols=11 Identities=18% Similarity=0.356 Sum_probs=5.1
Q ss_pred HHhhHHHHHHH
Q 040357 117 KLAGKAREMRD 127 (144)
Q Consensus 117 ri~d~A~~v~~ 127 (144)
|+++++++-.|
T Consensus 76 ~~qk~m~efq~ 86 (201)
T COG1422 76 ELQKMMKEFQK 86 (201)
T ss_pred HHHHHHHHHHH
Confidence 44444444444
No 121
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=23.39 E-value=89 Score=25.68 Aligned_cols=26 Identities=8% Similarity=0.439 Sum_probs=21.3
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHh
Q 040357 76 IMGFLASGGFGVAAISVLSWIYRYVT 101 (144)
Q Consensus 76 ~~Gfl~sg~~gltals~lsW~y~y~r 101 (144)
.+.|+.+-.+-+..++++..+|||.|
T Consensus 160 ~~SFiGGIVL~LGv~aI~ff~~KF~k 185 (186)
T PF05283_consen 160 AASFIGGIVLTLGVLAIIFFLYKFCK 185 (186)
T ss_pred hhhhhhHHHHHHHHHHHHHHHhhhcc
Confidence 45677777778888899999999986
No 122
>PRK15135 histidine/lysine/arginine/ornithine ABC transporter permease HisQ; Provisional
Probab=23.18 E-value=3.7e+02 Score=21.04 Aligned_cols=31 Identities=16% Similarity=0.224 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHH--HHHhc-CCCCCCCcHHHHHH
Q 040357 86 GVAAISVLSWIY--RYVTG-GHPPGADQLEQARM 116 (144)
Q Consensus 86 gltals~lsW~y--~y~rg-~~p~g~~~ld~Ar~ 116 (144)
++-+++...|.| |.+|+ -+...+|++|.||.
T Consensus 96 ~ilal~l~~~~~~~~~~r~~l~~v~~~~ieaA~~ 129 (228)
T PRK15135 96 GIITLGFIYGAYFTETFRGAFMAVPKGHIEAATA 129 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHhHHHHHHH
Confidence 445555555554 57777 35555788888875
No 123
>PF12259 DUF3609: Protein of unknown function (DUF3609); InterPro: IPR022048 This domain family is found in eukaryotes and viruses, and is typically between 348 and 360 amino acids in length.
Probab=23.14 E-value=17 Score=32.33 Aligned_cols=14 Identities=29% Similarity=0.691 Sum_probs=10.0
Q ss_pred HHHHHHHHHHhcCC
Q 040357 91 SVLSWIYRYVTGGH 104 (144)
Q Consensus 91 s~lsW~y~y~rg~~ 104 (144)
-++.|+|||++.+.
T Consensus 314 ~~~~~~~~~~~~~~ 327 (361)
T PF12259_consen 314 ISLAWLYRTFRRRQ 327 (361)
T ss_pred HHHHhheeehHHHH
Confidence 35669999987543
No 124
>PF14219 DUF4328: Domain of unknown function (DUF4328)
Probab=23.04 E-value=1.6e+02 Score=22.45 Aligned_cols=27 Identities=37% Similarity=0.596 Sum_probs=20.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 040357 75 LIMGFLASGGFGVAAISVLSWIYRYVT 101 (144)
Q Consensus 75 ~~~Gfl~sg~~gltals~lsW~y~y~r 101 (144)
..++.+....+-++++..+.|+||-.+
T Consensus 24 ~~~~~~~~~~~v~~~V~~l~Wl~rar~ 50 (171)
T PF14219_consen 24 ALLGLLALLLFVAAAVVFLVWLYRARA 50 (171)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666777888999999999543
No 125
>PF01864 DUF46: Putative integral membrane protein DUF46; InterPro: IPR002726 This archaebacterial protein has no known function. It contains several predicted transmembrane regions, suggesting it is an integral membrane protein.
Probab=22.66 E-value=3.2e+02 Score=22.10 Aligned_cols=16 Identities=38% Similarity=0.522 Sum_probs=11.5
Q ss_pred hcCCCCCCCcHHHHHH
Q 040357 101 TGGHPPGADQLEQARM 116 (144)
Q Consensus 101 rg~~p~g~~~ld~Ar~ 116 (144)
||++-++-||+|.+=.
T Consensus 116 ~G~~ap~lDQldf~lg 131 (175)
T PF01864_consen 116 RGAPAPGLDQLDFVLG 131 (175)
T ss_pred CCCcCccchhHHHHHH
Confidence 5666778899887643
No 126
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=22.63 E-value=2.8e+02 Score=27.62 Aligned_cols=51 Identities=14% Similarity=0.103 Sum_probs=30.8
Q ss_pred HHHhhhHHhh---chhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCCC
Q 040357 52 TIATPLLVIC---SPVLVPAVITVSLLIMGFLASGGFGVAAISVLSWIYRYVTGGHPPGA 108 (144)
Q Consensus 52 ~vaTPLfvif---SPVLVPAai~~~l~~~Gfl~sg~~gltals~lsW~y~y~rg~~p~g~ 108 (144)
+-..|+.+-. ++.+-|.++++ +.|+++|-.+- +-.+=++|.+++.+++..|
T Consensus 981 ~gllPlal~~g~g~~~~~pla~~i---i~GL~~St~lt---L~vvP~ly~~~~~~~~~~~ 1034 (1037)
T PRK10555 981 FGVLPMATSTGAGSGSQHAVGTGV---MGGMISATILA---IFFVPLFFVLVRRRFPLKP 1034 (1037)
T ss_pred HHHHHHHHhcCCChHHhcccHHHH---HHHHHHHHHHH---HHHHHHHHHHHHhhcCCCC
Confidence 3446877642 47888977654 33455554443 4555667777777776554
No 127
>PF09972 DUF2207: Predicted membrane protein (DUF2207); InterPro: IPR018702 This domain has no known function.
Probab=21.89 E-value=5.1e+02 Score=22.16 Aligned_cols=18 Identities=28% Similarity=0.551 Sum_probs=8.1
Q ss_pred HHHHHhcCCCCCCCcHHH
Q 040357 96 IYRYVTGGHPPGADQLEQ 113 (144)
Q Consensus 96 ~y~y~rg~~p~g~~~ld~ 113 (144)
.++.++-+.+-|.+..++
T Consensus 448 ~~~~~~~~T~~G~~~~~~ 465 (511)
T PF09972_consen 448 FYKVMPRRTPEGAELYAQ 465 (511)
T ss_pred HhhhccccchhHHHHHHH
Confidence 444444444545444333
No 128
>PRK08124 flagellar motor protein MotA; Validated
Probab=21.83 E-value=2.9e+02 Score=23.23 Aligned_cols=48 Identities=15% Similarity=0.048 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhhhHHhhchhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhc
Q 040357 44 MAGTVIALTIATPLLVICSPVLVPAVITVSLLIMGFLASGGFGVAAISVLSWIYRYVTG 102 (144)
Q Consensus 44 L~gtvigL~vaTPLfvifSPVLVPAai~~~l~~~Gfl~sg~~gltals~lsW~y~y~rg 102 (144)
+.|||+|++-+.--+ -. |..+.-+++++=..+.-++.++ -++|+|+.+
T Consensus 159 llGTVlGlI~~f~~l--~~----p~~lg~gIa~ALitT~yGl~vA-----~~~~~Pia~ 206 (263)
T PRK08124 159 VLGAVIGLIAALGNL--SD----IEKLGHAISAAFVATLLGIFTG-----YVLWHPFAN 206 (263)
T ss_pred HHHHHHHHHHHHHhc--cC----HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence 568999998765543 23 4544444444333332233322 556666644
No 129
>TIGR02805 exbB2 tonB-system energizer ExbB, group 2. Members of this protein family appear to be the ExbB protein of an ExbBD proton-transporting membrane complex that, by means of TonB, energizes transport by TonB-dependent receptors. Note that this family represents one of at least two distinct groups TolQ homologs designated ExbB - see also TIGR02797. Each group associates with a distinct group of ExbD proteins, and a single species may have two ExbB/ExbD/TonB systems.
Probab=21.72 E-value=97 Score=24.45 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHhhhHHhhc
Q 040357 42 LTMAGTVIALTIATPLLVICS 62 (144)
Q Consensus 42 lTL~gtvigL~vaTPLfvifS 62 (144)
..|..|+.||+++.|-.+..+
T Consensus 101 ~ALitTa~GL~VAIpali~yn 121 (138)
T TIGR02805 101 LALKATALGLLVAIPSLVFYN 121 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999877654
No 130
>PRK12911 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=21.53 E-value=4.3e+02 Score=28.28 Aligned_cols=34 Identities=12% Similarity=0.157 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHhhhHHhhchhhhHHHHHHHHHH
Q 040357 43 TMAGTVIALTIATPLLVICSPVLVPAVITVSLLI 76 (144)
Q Consensus 43 TL~gtvigL~vaTPLfvifSPVLVPAai~~~l~~ 76 (144)
++.+++..++.+.|||++-++.+-|.++++.+.+
T Consensus 1010 ILdTnLTTLIA~lPLf~fGtG~vkgFAvTLiIGI 1043 (1403)
T PRK12911 1010 IFDSNLTTILASALLLMLDTGPIKGFALTLIIGI 1043 (1403)
T ss_pred HHHHHHHHHHHHHHHHHhcccccccHHHHHHHHH
Confidence 3445556667778998888888888887766543
No 131
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=21.09 E-value=3.8e+02 Score=20.36 Aligned_cols=7 Identities=29% Similarity=0.942 Sum_probs=3.5
Q ss_pred HHHHHHH
Q 040357 94 SWIYRYV 100 (144)
Q Consensus 94 sW~y~y~ 100 (144)
.|+|+|+
T Consensus 83 ~yl~r~l 89 (121)
T PF11990_consen 83 GYLYRRL 89 (121)
T ss_pred hHHHHHH
Confidence 4555544
No 132
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=20.97 E-value=2.9e+02 Score=23.10 Aligned_cols=11 Identities=36% Similarity=0.845 Sum_probs=8.6
Q ss_pred hHHhhchhhhH
Q 040357 57 LLVICSPVLVP 67 (144)
Q Consensus 57 LfvifSPVLVP 67 (144)
++++++|+.||
T Consensus 239 ~llL~~Pl~i~ 249 (250)
T PF06813_consen 239 LLLLLLPLAIP 249 (250)
T ss_pred HHHHHhhhhcc
Confidence 47788888887
No 133
>PRK02391 heat shock protein HtpX; Provisional
Probab=20.81 E-value=5.3e+02 Score=21.98 Aligned_cols=37 Identities=5% Similarity=-0.034 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcHHHHHHHHhhHHHHH
Q 040357 89 AISVLSWIYRYVTGGHPPGADQLEQARMKLAGKAREM 125 (144)
Q Consensus 89 als~lsW~y~y~rg~~p~g~~~ld~Ar~ri~d~A~~v 125 (144)
..-...|+..+..|.++..+++..+-++++.+.+...
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~p~L~~~v~~la~~~ 89 (296)
T PRK02391 53 QYFFSDKLALWSMGARIVSEDEYPELHAMVERLCALA 89 (296)
T ss_pred HHHHhHHHHHHHcCCEECChhhCHHHHHHHHHHHHHc
Confidence 3444566667777777777766555555555555444
No 134
>PF05337 CSF-1: Macrophage colony stimulating factor-1 (CSF-1); InterPro: IPR008001 Colony stimulating factor 1 (CSF-1) is a homodimeric polypeptide growth factor whose primary function is to regulate the survival, proliferation, differentiation, and function of cells of the mononuclear phagocytic lineage. This lineage includes mononuclear phagocytic precursors, blood monocytes, tissue macrophages, osteoclasts, and microglia of the brain, all of which possess cell surface receptors for CSF-1. The protein has also been linked with male fertility [] and mutations in the Csf-1 gene have been found to cause osteopetrosis and failure of tooth eruption [].; GO: 0005125 cytokine activity, 0008083 growth factor activity, 0016021 integral to membrane; PDB: 3EJJ_A.
Probab=20.66 E-value=33 Score=30.15 Aligned_cols=18 Identities=44% Similarity=0.683 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHH
Q 040357 63 PVLVPAVITVSLLIMGFL 80 (144)
Q Consensus 63 PVLVPAai~~~l~~~Gfl 80 (144)
.+|||-+|++-|+++|++
T Consensus 229 ~lLVPSiILVLLaVGGLL 246 (285)
T PF05337_consen 229 YLLVPSIILVLLAVGGLL 246 (285)
T ss_dssp ------------------
T ss_pred cccccchhhhhhhcccee
Confidence 578999999999988875
No 135
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=20.64 E-value=6.4e+02 Score=22.80 Aligned_cols=40 Identities=18% Similarity=0.243 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhcCCCCCCCcHHHHHHHHhhHHHHHHHHHHHhchh
Q 040357 91 SVLSWIYRYVTGGHPPGADQLEQARMKLAGKAREMRDRAEQFGQQ 135 (144)
Q Consensus 91 s~lsW~y~y~rg~~p~g~~~ld~Ar~ri~d~A~~v~~ka~e~G~q 135 (144)
....|+++.++. -|.....=.-+-..+++|---+||||-+
T Consensus 102 ~l~g~ll~r~~~-----~~~~Ta~~gs~PGgas~m~~iA~d~gAd 141 (352)
T COG3180 102 ILLGWLLKRFSI-----LPGNTAFLGSSPGGASAMVSIAQDYGAD 141 (352)
T ss_pred HHHHHHHHHhcC-----CCcchhhHhcCCchHHHHHHHHHHhCCC
Confidence 566788887762 2334444455566777788888888854
No 136
>PRK15099 O-antigen translocase; Provisional
Probab=20.59 E-value=5.2e+02 Score=21.77 Aligned_cols=38 Identities=11% Similarity=0.013 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhhhHHhhchhhhHHHHHHHHHHHHHHH
Q 040357 44 MAGTVIALTIATPLLVICSPVLVPAVITVSLLIMGFLA 81 (144)
Q Consensus 44 L~gtvigL~vaTPLfvifSPVLVPAai~~~l~~~Gfl~ 81 (144)
+..++.+..+..|+..++.|.+=..+...+...+-+++
T Consensus 364 ~~~~~~~~~l~i~l~~~li~~~G~~G~a~a~~is~~~~ 401 (416)
T PRK15099 364 ILAEVSQFTLLTGFAHWLIPLHGALGAAQAYMATYIVY 401 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34455566666666667666655444444444444433
No 137
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=20.57 E-value=4.9e+02 Score=21.86 Aligned_cols=17 Identities=35% Similarity=0.317 Sum_probs=7.8
Q ss_pred HHhcCCC--CCCCcHHHHH
Q 040357 99 YVTGGHP--PGADQLEQAR 115 (144)
Q Consensus 99 y~rg~~p--~g~~~ld~Ar 115 (144)
|..|..| .-.||+|..|
T Consensus 93 yr~Gv~~w~~~~d~~~~~~ 111 (197)
T PRK12585 93 YDTGVPLAIRIRDQLRSVK 111 (197)
T ss_pred HHcCCCcchhhHHHHHHHH
Confidence 4455443 3344554443
No 138
>PRK11588 hypothetical protein; Provisional
Probab=20.57 E-value=3.1e+02 Score=25.79 Aligned_cols=27 Identities=11% Similarity=0.393 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhhhHHhhchhhhHHHHHHH
Q 040357 44 MAGTVIALTIATPLLVICSPVLVPAVITVS 73 (144)
Q Consensus 44 L~gtvigL~vaTPLfvifSPVLVPAai~~~ 73 (144)
+.|+..|+. --.+-|.|++||.+...+
T Consensus 160 l~G~~~G~~---Ee~i~f~pi~v~l~~alG 186 (506)
T PRK11588 160 LGGAVFGMG---EEAIAFAIIIAPLMVRLG 186 (506)
T ss_pred HHHHHhhhh---HHHHHHHHHHHHHHHHhC
Confidence 344555543 335578899999877654
No 139
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=20.44 E-value=2.5e+02 Score=22.67 Aligned_cols=10 Identities=20% Similarity=0.328 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q 040357 91 SVLSWIYRYV 100 (144)
Q Consensus 91 s~lsW~y~y~ 100 (144)
.++.|+.+|+
T Consensus 59 lIlv~lL~k~ 68 (205)
T PRK06231 59 SILLLLGIFL 68 (205)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 140
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=20.43 E-value=3.3e+02 Score=19.39 Aligned_cols=21 Identities=10% Similarity=0.256 Sum_probs=12.3
Q ss_pred CCCcHHHHHHHHhhHHHHHHH
Q 040357 107 GADQLEQARMKLAGKAREMRD 127 (144)
Q Consensus 107 g~~~ld~Ar~ri~d~A~~v~~ 127 (144)
.+..++.-++.+.+..+-.||
T Consensus 100 ~~~~~~~t~~~l~~d~~~lk~ 120 (121)
T PF07332_consen 100 APPPFEETIAELKEDIAALKE 120 (121)
T ss_pred CCCCHHHHHHHHHHHHHHhhc
Confidence 455666666666665554443
No 141
>COG3197 FixS Uncharacterized protein, possibly involved in nitrogen fixation [Inorganic ion transport and metabolism]
Probab=20.33 E-value=1.1e+02 Score=21.01 Aligned_cols=22 Identities=18% Similarity=0.623 Sum_probs=14.7
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 040357 64 VLVPAVITVSLLIMGFLASGGFGVAAISVLSWIYR 98 (144)
Q Consensus 64 VLVPAai~~~l~~~Gfl~sg~~gltals~lsW~y~ 98 (144)
+|+|++|..+.+ ++..+.|-.|
T Consensus 6 ~Lipvsi~l~~v-------------~l~~flWavk 27 (58)
T COG3197 6 ILIPVSILLGAV-------------GLGAFLWAVK 27 (58)
T ss_pred eHHHHHHHHHHH-------------HHHHHHHhcc
Confidence 477877765544 3567788876
No 142
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=20.13 E-value=1.3e+02 Score=23.66 Aligned_cols=15 Identities=20% Similarity=0.344 Sum_probs=8.2
Q ss_pred HHHHHHHhhHHHHHH
Q 040357 112 EQARMKLAGKAREMR 126 (144)
Q Consensus 112 d~Ar~ri~d~A~~v~ 126 (144)
|+-...|.|.|++++
T Consensus 68 D~~daEI~dgAGe~G 82 (137)
T PF12270_consen 68 DREDAEIADGAGELG 82 (137)
T ss_pred cccccccccCCCCcC
Confidence 444455666665543
Done!