Query 040357
Match_columns 144
No_of_seqs 112 out of 188
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 12:06:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040357.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040357hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lx0_A Membrane fusion protein 65.5 10 0.00036 22.1 3.9 15 87-101 16-30 (32)
2 2l8s_A Integrin alpha-1; trans 42.3 44 0.0015 21.7 4.4 30 85-114 21-50 (54)
3 3qc0_A Sugar isomerase; TIM ba 31.0 64 0.0022 23.7 4.4 33 102-134 105-137 (275)
4 1zv1_A Doublesex protein; UBA 29.7 60 0.002 21.9 3.6 23 110-132 40-62 (65)
5 3s79_A Cytochrome P450 19A1; o 26.5 51 0.0017 26.4 3.3 38 97-134 39-83 (503)
6 2l2t_A Receptor tyrosine-prote 24.9 1.3E+02 0.0043 18.6 4.3 22 80-101 16-37 (44)
7 2k1k_A Ephrin type-A receptor 24.0 86 0.0029 18.6 3.3 21 77-97 14-34 (38)
8 2k6o_A Cathelicidin antimicrob 23.7 92 0.0032 18.9 3.3 27 110-136 5-31 (37)
9 2jz1_A Protein doublesex; sex 22.1 1.5E+02 0.0052 20.6 4.7 36 93-132 27-62 (80)
10 4av3_A K(+)-stimulated pyropho 21.9 1E+02 0.0035 29.0 4.8 35 89-124 23-57 (735)
11 1xwj_B Talin, metavinculin; ce 20.5 45 0.0015 18.1 1.4 20 114-133 2-21 (26)
No 1
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=65.49 E-value=10 Score=22.15 Aligned_cols=15 Identities=13% Similarity=0.696 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHh
Q 040357 87 VAAISVLSWIYRYVT 101 (144)
Q Consensus 87 ltals~lsW~y~y~r 101 (144)
++.++.-.|++||+.
T Consensus 16 ltflafgfwlfkylq 30 (32)
T 2lx0_A 16 LTFLAFGFWLFKYLQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 455677789999985
No 2
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=42.30 E-value=44 Score=21.66 Aligned_cols=30 Identities=10% Similarity=0.195 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCcHHHH
Q 040357 85 FGVAAISVLSWIYRYVTGGHPPGADQLEQA 114 (144)
Q Consensus 85 ~gltals~lsW~y~y~rg~~p~g~~~ld~A 114 (144)
+-++.+..+.|-..+|+.+.|+..+.+|.-
T Consensus 21 LLL~Lii~~LwK~GFFKR~~~~~~~~~~~~ 50 (54)
T 2l8s_A 21 LLLMLLILALWKIGFFKRPLKKKMEKLEHH 50 (54)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSCCCCC----
T ss_pred HHHHHHHHHHHHcCcccCCCcchhhHHhhh
Confidence 446777889999999999888777777653
No 3
>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A
Probab=30.96 E-value=64 Score=23.71 Aligned_cols=33 Identities=24% Similarity=0.393 Sum_probs=25.9
Q ss_pred cCCCCCCCcHHHHHHHHhhHHHHHHHHHHHhch
Q 040357 102 GGHPPGADQLEQARMKLAGKAREMRDRAEQFGQ 134 (144)
Q Consensus 102 g~~p~g~~~ld~Ar~ri~d~A~~v~~ka~e~G~ 134 (144)
|..|.+....+.+..++.+.-+++.++++++|-
T Consensus 105 g~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv 137 (275)
T 3qc0_A 105 GGLPGGSKNIDAARRMVVEGIAAVLPHARAAGV 137 (275)
T ss_dssp BCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 444544445788889999999999999999984
No 4
>1zv1_A Doublesex protein; UBA domain, dimerization, sex determination, transcription factor, protein binding; 1.60A {Drosophila melanogaster} PDB: 2jz0_A
Probab=29.73 E-value=60 Score=21.90 Aligned_cols=23 Identities=13% Similarity=0.232 Sum_probs=19.0
Q ss_pred cHHHHHHHHhhHHHHHHHHHHHh
Q 040357 110 QLEQARMKLAGKAREMRDRAEQF 132 (144)
Q Consensus 110 ~ld~Ar~ri~d~A~~v~~ka~e~ 132 (144)
.+|.|.+||.|.-.-+.++.|..
T Consensus 40 d~eeAsrrI~Eg~~~v~~ysr~h 62 (65)
T 1zv1_A 40 NIEEASRRIEEGQYVVNEYSRQH 62 (65)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHh
Confidence 39999999999888888887653
No 5
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo sapiens} PDB: 3eqm_A* 3s7s_A* 4gl5_A* 4gl7_A*
Probab=26.45 E-value=51 Score=26.45 Aligned_cols=38 Identities=16% Similarity=0.332 Sum_probs=16.7
Q ss_pred HHHHhcCCCCCCCc-------HHHHHHHHhhHHHHHHHHHHHhch
Q 040357 97 YRYVTGGHPPGADQ-------LEQARMKLAGKAREMRDRAEQFGQ 134 (144)
Q Consensus 97 y~y~rg~~p~g~~~-------ld~Ar~ri~d~A~~v~~ka~e~G~ 134 (144)
++|.+-+.||||.. .+.-+..-.+.-....+++|+||.
T Consensus 39 ~~~~~~~~pPGP~~~P~iGnl~~~~~~~~~~~~~~~~~~~~~yG~ 83 (503)
T 3s79_A 39 WNYEGTSSIPGPGYCMGIGPLISHGRFLWMGIGSACNYYNRVYGE 83 (503)
T ss_dssp ------CCCCSCCCCSSSHHHHHHHHHHHHCHHHHHHHHHHHSCS
T ss_pred HHHhccCCCCCCCCCceeeehhccccccccchhHHHHHHHHHhCC
Confidence 34445578888843 232221111222345677888984
No 6
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=24.91 E-value=1.3e+02 Score=18.57 Aligned_cols=22 Identities=14% Similarity=0.153 Sum_probs=14.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHh
Q 040357 80 LASGGFGVAAISVLSWIYRYVT 101 (144)
Q Consensus 80 l~sg~~gltals~lsW~y~y~r 101 (144)
+-+|-+++..+..+.|+|-..|
T Consensus 16 VVgGv~~v~ii~~~~~~~~RRR 37 (44)
T 2l2t_A 16 VIGGLFILVIVGLTFAVYVRRK 37 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred ehHHHHHHHHHHHHHHHHhhhh
Confidence 3455666777777777776443
No 7
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=24.01 E-value=86 Score=18.55 Aligned_cols=21 Identities=10% Similarity=-0.015 Sum_probs=10.4
Q ss_pred HHHHHhhHHHHHHHHHHHHHH
Q 040357 77 MGFLASGGFGVAAISVLSWIY 97 (144)
Q Consensus 77 ~Gfl~sg~~gltals~lsW~y 97 (144)
+|...+...|++.+..+.|.+
T Consensus 14 AGiVvG~v~gv~li~~l~~~~ 34 (38)
T 2k1k_A 14 VAVIFGLLLGAALLLGILVFR 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHHHHHH
Confidence 344444444555555555543
No 8
>2k6o_A Cathelicidin antimicrobial peptide; human HOST defense peptide, human cathelicidin, LL-37, bacterial membrane targeting, antibiotic; NMR {Homo sapiens} PDB: 2lmf_A
Probab=23.74 E-value=92 Score=18.86 Aligned_cols=27 Identities=11% Similarity=0.262 Sum_probs=22.6
Q ss_pred cHHHHHHHHhhHHHHHHHHHHHhchhh
Q 040357 110 QLEQARMKLAGKAREMRDRAEQFGQQQ 136 (144)
Q Consensus 110 ~ld~Ar~ri~d~A~~v~~ka~e~G~q~ 136 (144)
-+..++.+|.++-+.++||.|++=+.-
T Consensus 5 ~lrk~geKig~~~kkIgQkIKdFf~~l 31 (37)
T 2k6o_A 5 FFRKSKEKIGKEFKRIVQRIKDFLRNL 31 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356789999999999999999987653
No 9
>2jz1_A Protein doublesex; sex determination, development, gene regulation, ubiquitin, transcription; NMR {Drosophila melanogaster}
Probab=22.10 E-value=1.5e+02 Score=20.60 Aligned_cols=36 Identities=14% Similarity=0.305 Sum_probs=25.3
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHhhHHHHHHHHHHHh
Q 040357 93 LSWIYRYVTGGHPPGADQLEQARMKLAGKAREMRDRAEQF 132 (144)
Q Consensus 93 lsW~y~y~rg~~p~g~~~ld~Ar~ri~d~A~~v~~ka~e~ 132 (144)
+.|||=-+++.. .| +|.|.+||.|.-..+.++.|..
T Consensus 27 MpLMyVILK~a~---~d-~eeAsrrI~eg~~~vn~~~r~h 62 (80)
T 2jz1_A 27 MPLMYVILKDAD---AN-IEEASRRIEEGQYVVNEYSRQH 62 (80)
T ss_dssp HHHHHHHHHHTT---TC-HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccC---CC-HHHHHHHHHHHHHHHHHHHHHH
Confidence 456665555432 33 9999999999888888876643
No 10
>4av3_A K(+)-stimulated pyrophosphate-energized sodium PU; hydrolase, membrane pyrophosphotase, ION pump; 2.60A {Thermotoga maritima} PDB: 4av6_A
Probab=21.89 E-value=1e+02 Score=29.00 Aligned_cols=35 Identities=14% Similarity=0.268 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcHHHHHHHHhhHHHH
Q 040357 89 AISVLSWIYRYVTGGHPPGADQLEQARMKLAGKARE 124 (144)
Q Consensus 89 als~lsW~y~y~rg~~p~g~~~ld~Ar~ri~d~A~~ 124 (144)
++..-.|+|+++. ++|.|.|+|.+-.+.|+|.|+-
T Consensus 23 ~l~~a~~~~~~v~-~~~~G~~~M~eIa~~I~eGA~a 57 (735)
T 4av3_A 23 ALGFAAANFAAVV-RKPEGTERMKEISSYIRSGADS 57 (735)
T ss_dssp HHHHHHHHHHHHH-TSCC-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHHHH
Confidence 3444556677765 4788998877777777776653
No 11
>1xwj_B Talin, metavinculin; cell adhesion/protein binding complex; 2.60A {Gallus gallus} PDB: 1rkc_B
Probab=20.53 E-value=45 Score=18.15 Aligned_cols=20 Identities=15% Similarity=0.300 Sum_probs=14.5
Q ss_pred HHHHHhhHHHHHHHHHHHhc
Q 040357 114 ARMKLAGKAREMRDRAEQFG 133 (144)
Q Consensus 114 Ar~ri~d~A~~v~~ka~e~G 133 (144)
+++.+.|.++.|.||-.++-
T Consensus 2 ~q~el~~~~r~v~ekV~~vl 21 (26)
T 1xwj_B 2 TKKELIESARKVSEKVSHVL 21 (26)
T ss_dssp -CCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHH
Confidence 35678888888888877653
Done!