Query 040357
Match_columns 144
No_of_seqs 112 out of 188
Neff 3.8
Searched_HMMs 13730
Date Mon Mar 25 12:06:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040357.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040357hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q90m_ f.23.25.1 (M:) PetM su 65.8 4.2 0.0003 22.8 3.7 22 32-53 5-26 (34)
2 d1ijwc_ a.4.1.2 (C:) HIN recom 49.3 4.6 0.00034 23.6 2.1 31 102-133 1-32 (47)
3 d2o7ta2 a.121.1.1 (A:79-188) T 28.7 21 0.0015 23.3 3.0 28 107-134 34-61 (110)
4 d1r2ja1 a.29.3.1 (A:213-365) P 27.4 53 0.0039 21.3 5.1 43 82-125 19-63 (153)
5 d1qkra_ a.24.9.1 (A:) Vinculin 25.5 14 0.0011 26.8 1.9 44 91-135 48-91 (181)
6 d1pv7a_ f.38.1.2 (A:) Lactose 21.6 1E+02 0.0076 20.5 5.8 11 111-121 406-416 (417)
7 d3dhwa1 f.58.1.1 (A:6-208) D-m 15.3 1.5E+02 0.011 19.5 6.3 16 42-57 14-29 (203)
8 d1siqa1 a.29.3.1 (A:239-392) G 14.9 1E+02 0.0076 20.0 4.4 36 90-125 24-61 (154)
9 d1vr4a1 d.230.5.1 (A:1-103) Hy 13.7 27 0.002 22.6 0.9 37 98-137 41-77 (103)
10 d1bl0a2 a.4.1.8 (A:63-124) Mar 13.1 34 0.0025 19.9 1.2 25 110-134 2-26 (62)
No 1
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=65.84 E-value=4.2 Score=22.82 Aligned_cols=22 Identities=27% Similarity=0.635 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 040357 32 AGGSLLVLSGLTMAGTVIALTI 53 (144)
Q Consensus 32 ~g~~LL~LaGlTL~gtvigL~v 53 (144)
++++-+...|+||.|..||+++
T Consensus 5 iagta~tmig~tl~glaigfvl 26 (34)
T d1q90m_ 5 IAGTALTMVGMTLVGLAIGFVL 26 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecchhHHHHHHHHHHHHHHHhh
Confidence 4566788899999999999875
No 2
>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic}
Probab=49.33 E-value=4.6 Score=23.63 Aligned_cols=31 Identities=23% Similarity=0.192 Sum_probs=23.7
Q ss_pred cCCCC-CCCcHHHHHHHHhhHHHHHHHHHHHhc
Q 040357 102 GGHPP-GADQLEQARMKLAGKAREMRDRAEQFG 133 (144)
Q Consensus 102 g~~p~-g~~~ld~Ar~ri~d~A~~v~~ka~e~G 133 (144)
|+.|. .+||+++||.++.+. .-+.|-|++||
T Consensus 1 GR~~~lt~~q~~~a~~l~~~G-~s~~~iA~~~g 32 (47)
T d1ijwc_ 1 GRPRAINKHEQEQISRLLEKG-HPRQQLAIIFG 32 (47)
T ss_dssp CCCCSSCHHHHHHHHHHHHTT-CCHHHHHHHHT
T ss_pred CCCCcCCHHHHHHHHHHHHCC-CCHHHHHHHHC
Confidence 34443 357899999999765 67899999998
No 3
>d2o7ta2 a.121.1.1 (A:79-188) Transcriptional regulator Cgl1640/Cg1846 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=28.66 E-value=21 Score=23.34 Aligned_cols=28 Identities=18% Similarity=0.196 Sum_probs=25.3
Q ss_pred CCCcHHHHHHHHhhHHHHHHHHHHHhch
Q 040357 107 GADQLEQARMKLAGKAREMRDRAEQFGQ 134 (144)
Q Consensus 107 g~~~ld~Ar~ri~d~A~~v~~ka~e~G~ 134 (144)
..+++..+|.|+.+....+-++||+-|.
T Consensus 34 ~~~~~~~~r~~l~~~~~~ll~rA~~aG~ 61 (110)
T d2o7ta2 34 LPDEVSALRRTTEKNTTTLINLAKQHGL 61 (110)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4668999999999999999999999884
No 4
>d1r2ja1 a.29.3.1 (A:213-365) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]}
Probab=27.39 E-value=53 Score=21.29 Aligned_cols=43 Identities=9% Similarity=-0.058 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCCCC--cHHHHHHHHhhHHHHH
Q 040357 82 SGGFGVAAISVLSWIYRYVTGGHPPGAD--QLEQARMKLAGKAREM 125 (144)
Q Consensus 82 sg~~gltals~lsW~y~y~rg~~p~g~~--~ld~Ar~ri~d~A~~v 125 (144)
++++|++ =..+-+..+|.+.|..-|.. ..+..+.|++|...++
T Consensus 19 ~~a~G~a-~~al~~a~~ya~~R~~fG~pl~~~q~vq~~la~~~~~~ 63 (153)
T d1r2ja1 19 WGCVGIL-RACRTAAVAHARTREQFGRPLGDHQLVAGHIADLWTAE 63 (153)
T ss_dssp HHHHHHH-HHHHHHHHHHHTTCEETTEEGGGSHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHhhcccCCccccccchhhhhhhhhccch
Confidence 3444443 35688899999987654422 3466777877765543
No 5
>d1qkra_ a.24.9.1 (A:) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=25.54 E-value=14 Score=26.79 Aligned_cols=44 Identities=23% Similarity=0.277 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhcCCCCCCCcHHHHHHHHhhHHHHHHHHHHHhchh
Q 040357 91 SVLSWIYRYVTGGHPPGADQLEQARMKLAGKAREMRDRAEQFGQQ 135 (144)
Q Consensus 91 s~lsW~y~y~rg~~p~g~~~ld~Ar~ri~d~A~~v~~ka~e~G~q 135 (144)
+...=||.|.||..|...| +=.+-..+++.+..+.+.+|+...+
T Consensus 48 ~~m~~m~~f~rg~g~~k~d-LI~aAK~iA~a~~~L~~~Ar~iA~~ 91 (181)
T d1qkra_ 48 LLMAEMSRLVRGGSGNKRA-LIQCAKDIAKASDEVTRLAKEVAKQ 91 (181)
T ss_dssp HHHHHHHHHTTSCGGGHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4456688899998776554 4444457888888888888887653
No 6
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=21.60 E-value=1e+02 Score=20.49 Aligned_cols=11 Identities=18% Similarity=0.151 Sum_probs=7.3
Q ss_pred HHHHHHHHhhH
Q 040357 111 LEQARMKLAGK 121 (144)
Q Consensus 111 ld~Ar~ri~d~ 121 (144)
.+..|+|+.|-
T Consensus 406 ~~~~r~~~~e~ 416 (417)
T d1pv7a_ 406 LSLLRRQVNEV 416 (417)
T ss_dssp TTHHHHHHHHH
T ss_pred cchhHhhhccC
Confidence 56677777664
No 7
>d3dhwa1 f.58.1.1 (A:6-208) D-methionine transport system permease protein MetI {Escherichia coli [TaxId: 562]}
Probab=15.31 E-value=1.5e+02 Score=19.47 Aligned_cols=16 Identities=19% Similarity=0.470 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHhhh
Q 040357 42 LTMAGTVIALTIATPL 57 (144)
Q Consensus 42 lTL~gtvigL~vaTPL 57 (144)
+++.++++++++++|+
T Consensus 14 is~~~~~i~~ilg~~l 29 (203)
T d3dhwa1 14 MTFVSGFFGFVIGLPV 29 (203)
T ss_dssp HHHHHHHHHHHTTGGG
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4556666666666664
No 8
>d1siqa1 a.29.3.1 (A:239-392) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.91 E-value=1e+02 Score=20.04 Aligned_cols=36 Identities=19% Similarity=0.104 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhcCCCCCCC--cHHHHHHHHhhHHHHH
Q 040357 90 ISVLSWIYRYVTGGHPPGAD--QLEQARMKLAGKAREM 125 (144)
Q Consensus 90 ls~lsW~y~y~rg~~p~g~~--~ld~Ar~ri~d~A~~v 125 (144)
=..+-+..+|.+.|+.-|.+ +.+..++|++|...++
T Consensus 24 ~~~l~~a~~ya~~R~~fG~pl~~~q~v~~~la~~~~~~ 61 (154)
T d1siqa1 24 EFCLHTARQYALDRMQFGVPLARNQLIQKKLADMLTEI 61 (154)
T ss_dssp HHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHHH
Confidence 35688999999988766644 3567778888876654
No 9
>d1vr4a1 d.230.5.1 (A:1-103) Hypothetical protein BC1012 {Bacillus cereus [TaxId: 1396]}
Probab=13.68 E-value=27 Score=22.62 Aligned_cols=37 Identities=30% Similarity=0.313 Sum_probs=25.7
Q ss_pred HHHhcCCCCCCCcHHHHHHHHhhHHHHHHHHHHHhchhhh
Q 040357 98 RYVTGGHPPGADQLEQARMKLAGKAREMRDRAEQFGQQQI 137 (144)
Q Consensus 98 ~y~rg~~p~g~~~ld~Ar~ri~d~A~~v~~ka~e~G~q~~ 137 (144)
+.+.|+-..-.+.+++||+...+ +++++|++.|-.++
T Consensus 41 ~~~gG~~~~y~~~l~~aR~eA~~---rl~~~A~~lGAnAV 77 (103)
T d1vr4a1 41 DVVGGRAGSYESKLKEARDIAMD---EMKELAKQKGANAI 77 (103)
T ss_dssp SEEETTTTSSSCTTHHHHHHHHH---HHHHHHHHTTCSEE
T ss_pred hhhCcchHHHHHHHHHHHHHHHH---HHHHHHHhCCCCEE
Confidence 34455556667779999975443 47888888887665
No 10
>d1bl0a2 a.4.1.8 (A:63-124) MarA {Escherichia coli [TaxId: 562]}
Probab=13.13 E-value=34 Score=19.88 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=20.5
Q ss_pred cHHHHHHHHhhHHHHHHHHHHHhch
Q 040357 110 QLEQARMKLAGKAREMRDRAEQFGQ 134 (144)
Q Consensus 110 ~ld~Ar~ri~d~A~~v~~ka~e~G~ 134 (144)
+++.|+..+.++-.-+.|=|.++|=
T Consensus 2 Rl~~a~~lL~~t~~~i~~IA~~~Gf 26 (62)
T d1bl0a2 2 KMTEIAQKLKESNEPILYLAERYGF 26 (62)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHHTTC
T ss_pred HHHHHHHHHHccCCCHHHHHHHHCC
Confidence 5888999888888888888888873
Done!