BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040358
(236 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P13284|GILT_HUMAN Gamma-interferon-inducible lysosomal thiol reductase OS=Homo
sapiens GN=IFI30 PE=1 SV=3
Length = 250
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 97/194 (50%), Gaps = 25/194 (12%)
Query: 44 VNLSLYYETLCPGCAEFISEGLGKLFEKGLI--SIVNLRLIPWGNAKI--VEPNKTIDCQ 99
VN++LYYE LC GC F+ + +LF L+ I+N+ L+P+GNA+ V CQ
Sbjct: 62 VNVTLYYEALCGGCRAFL---IRELFPTWLLVMEILNVTLVPYGNAQEQNVSGRWEFKCQ 118
Query: 100 HGEDECYFNTIEACAILAWPDQPKNHFDF--IQCLENRTLRGPIRDRKEAWLTCCKDL-- 155
HGE+EC FN +EAC + D+ F I C+E + E L C L
Sbjct: 119 HGEEECKFNKVEACVL----DELDMELAFLTIVCMEEF-------EDMERSLPLCLQLYA 167
Query: 156 -ELSPNFIKDCYESGIGRLLELKYGDETLHLNPPLEYVPWVTVNNKALREDYEKFVEYVC 214
LSP+ I +C G L T L PP EYVPWVTVN K L ED + + VC
Sbjct: 168 PGLSPDTIMECAMGDRGMQLMHANAQRTDALQPPHEYVPWVTVNGKPL-EDQTQLLTLVC 226
Query: 215 GAYKGGHVPEACKS 228
Y+G P+ C S
Sbjct: 227 QLYQGKK-PDVCPS 239
>sp|A6QPN6|GILT_BOVIN Gamma-interferon-inducible lysosomal thiol reductase OS=Bos taurus
GN=IFI30 PE=2 SV=1
Length = 244
Score = 95.9 bits (237), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/193 (36%), Positives = 97/193 (50%), Gaps = 25/193 (12%)
Query: 44 VNLSLYYETLCPGCAEFISEGLGKLFEKGL--ISIVNLRLIPWGNA--KIVEPNKTIDCQ 99
VN+SLYYE LCPGC EF+ + +LF L + I+N+ L+P+GNA + V CQ
Sbjct: 56 VNVSLYYEALCPGCREFL---IRELFPTWLMVLEILNVTLVPYGNAQERNVSGKWEFTCQ 112
Query: 100 HGEDECYFNTIEACAILAWPDQPKNHFDF--IQCLENRTLRGPIRDRKEAWLTCCKDL-- 155
HGE EC N +EAC + DQ + F I CLE D E L C +
Sbjct: 113 HGERECLLNKVEACLL----DQLEQKIAFLTIVCLEE-------MDDMEQNLKPCLQIYA 161
Query: 156 -ELSPNFIKDCYESGIGRLLELKYGDETLHLNPPLEYVPWVTVNNKALREDYEKFVEYVC 214
++S + I +C G L T L PP +YVPWV VN + ++ D E + VC
Sbjct: 162 PKVSADSIMECATGNRGMQLLHINAQLTDALRPPHKYVPWVVVNGEHMK-DAEHLLHLVC 220
Query: 215 GAYKGGHVPEACK 227
Y+G P+ C+
Sbjct: 221 RLYQGQK-PDVCQ 232
>sp|Q9ESY9|GILT_MOUSE Gamma-interferon-inducible lysosomal thiol reductase OS=Mus
musculus GN=Ifi30 PE=1 SV=3
Length = 248
Score = 94.7 bits (234), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 96/192 (50%), Gaps = 16/192 (8%)
Query: 44 VNLSLYYETLCPGCAEFISEGLGKLFEKGLISIVNLRLIPWGNAKIVEPNKT--IDCQHG 101
V +SLYYE+LC C F+ L + ++ I+N+ L+P+GNA+ + T CQHG
Sbjct: 59 VRVSLYYESLCGACRYFLVRDLFPTW-LMVMEIMNITLVPYGNAQERNVSGTWEFTCQHG 117
Query: 102 EDECYFNTIEACAILAWPDQPKNHFDFIQCLENRTLRGPIRDRKEAWLTCCKDL---ELS 158
E EC N +EAC + + + F I C+E D E L C + E+S
Sbjct: 118 ELECRLNMVEACLLDKL--EKEAAFLTIVCMEEM-------DDMEKKLGPCLQVYAPEVS 168
Query: 159 PNFIKDCYESGIGRLLELKYGDETLHLNPPLEYVPWVTVNNKALREDYEKFVEYVCGAYK 218
P I +C G L + T L+PP EYVPWV VN K L+ D + + VC Y+
Sbjct: 169 PESIMECATGKRGTQLMHENAQLTDALHPPHEYVPWVLVNEKPLK-DPSELLSIVCQLYQ 227
Query: 219 GGHVPEACKSLS 230
G P+ C S++
Sbjct: 228 GTEKPDICSSIA 239
>sp|Q499T2|GILT_RAT Gamma-interferon-inducible lysosomal thiol reductase OS=Rattus
norvegicus GN=Ifi30 PE=2 SV=1
Length = 248
Score = 94.4 bits (233), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 95/192 (49%), Gaps = 16/192 (8%)
Query: 44 VNLSLYYETLCPGCAEFISEGLGKLFEKGLISIVNLRLIPWGNAKIVEPNKT--IDCQHG 101
VN+SLYYE+LC C F+ L + ++ I+N+ L+P+GNA+ + T CQHG
Sbjct: 59 VNVSLYYESLCGACRYFLVRNLFPTWLM-VMEIMNITLVPYGNAQERNVSGTWEFTCQHG 117
Query: 102 EDECYFNTIEACAILAWPDQPKNHFDFIQCLENRTLRGPIRDRKEAWLTCCKDL---ELS 158
E EC N +EAC + + + F I C+E + E L C L E+S
Sbjct: 118 ELECKLNKVEACLLDKL--EKEAAFLTIVCMEEM-------EDMEKKLGPCLQLYVPEVS 168
Query: 159 PNFIKDCYESGIGRLLELKYGDETLHLNPPLEYVPWVTVNNKALREDYEKFVEYVCGAYK 218
P I +C G L + T L PP EYVPWV VN K L D + + VC Y+
Sbjct: 169 PESIMECATGKRGTELMHENAQLTDALQPPHEYVPWVLVNEKPLT-DPSQLLSSVCELYQ 227
Query: 219 GGHVPEACKSLS 230
G P+ C S++
Sbjct: 228 GTEKPDICSSMA 239
>sp|B3SP85|GILT_PIG Gamma-interferon-inducible-lysosomal thiol reductase OS=Sus scrofa
GN=IFI30 PE=2 SV=1
Length = 246
Score = 92.4 bits (228), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/223 (33%), Positives = 111/223 (49%), Gaps = 34/223 (15%)
Query: 21 SSPCS----CVEYDGATNLPPPKHNDNVNLSLYYETLCPGCAEFISEGLGKLFEKGLI-- 74
++PC C++ + PPP VN++LYYE+LC GC F+ + +LF L+
Sbjct: 36 AAPCKAGEPCLQRPVGKSDPPP-----VNVNLYYESLCNGCRYFL---VRELFPTWLMVW 87
Query: 75 SIVNLRLIPWGNA--KIVEPNKTIDCQHGEDECYFNTIEACAILAWPDQPKNHFDF--IQ 130
I+N+ L+P+GNA + V CQHGE EC N +EAC + D+ + + F I
Sbjct: 88 EILNVTLVPYGNAQERNVSGRWEFTCQHGEQECKMNKVEACLL----DKLEKNMAFLTIV 143
Query: 131 CLENRTLRGPIRDRKEAWLTCCKDL---ELSPNFIKDCYESGIGRLLELKYGDETLHLNP 187
C+E D E L C + ++SP+ I +C G L T L P
Sbjct: 144 CIEEL-------DDMEKNLEPCLQIYAPKVSPDSIMECAMGDRGMQLLHINAQLTDALKP 196
Query: 188 PLEYVPWVTVNNKALREDYEKFVEYVCGAYKGGHVPEACKSLS 230
P EYVPWV VN K + E ++ + VC Y+G P+ C+ L+
Sbjct: 197 PHEYVPWVVVNGKPMTEK-DQLLRLVCQLYEGEK-PDVCQILA 237
>sp|O17861|YVRI_CAEEL GILT-like protein F37H8.5 OS=Caenorhabditis elegans GN=F37H8.5 PE=1
SV=1
Length = 277
Score = 88.2 bits (217), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 92/167 (55%), Gaps = 9/167 (5%)
Query: 40 HNDNVNLSLYYETLCPGCAEFISEGLGKLFEKGLISIVNLRLIPWGNAKIVEPNKTIDCQ 99
HN +N+++ E LCP C F+++ L + K + VN+ L+P+GNAK++E + TI CQ
Sbjct: 72 HNQKINITVLIEALCPDCQNFLTKQLYPIVFKNFANYVNIELVPFGNAKVLE-DGTIKCQ 130
Query: 100 HGEDECYFNTIEACAILAWPDQPKNHFDFIQCLENRTLRGPIRDRKEAWLTCCKDLELSP 159
HGE+EC N E C I + DQ + + C+E +L+ + + +A C + L++
Sbjct: 131 HGEEECSINKFEGCFIDSMQDQ--SPLPTLSCIE-ESLQKKV-EFADAVQQCFEKLQIGG 186
Query: 160 N---FIKDCYESGIGRLLELKYGDETLHLNPPL-EYVPWVTVNNKAL 202
+ + C S +G L+ K T ++ P ++VPWV +N +L
Sbjct: 187 DIQRLTQSCLVSKLGADLQNKAAAATANVWPEQHKFVPWVIINGVSL 233
>sp|P34276|YKJ2_CAEEL GILT-like protein C02D5.2 OS=Caenorhabditis elegans GN=C02D5.2 PE=3
SV=1
Length = 323
Score = 70.9 bits (172), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 82/187 (43%), Gaps = 12/187 (6%)
Query: 44 VNLSLYYETLCPGCAEFISEGLGKLFE-KGLISIVNLRLIPWGNAKIVEPNKTIDCQ--H 100
V L +Y E CP + F + L K ++ G ++ + L +IP+G A+ E +CQ H
Sbjct: 139 VKLDVYMEAQCPDTSRFFRQQLKKAWDILGRLNRIELNVIPFGKARCTEKGNDFECQCQH 198
Query: 101 GEDECYFNTIEACAILAWPDQPKNHFDFIQCLENRTLRGPIRDRKEAWLTCCKDLELSPN 160
G EC N + C I + P + + C++ + EA ++
Sbjct: 199 GPTECQINQLMNCVIDRF-GFPHRYLPGVLCMQGKY------SLDEAMKCVTENYPSEYE 251
Query: 161 FIKDCYESGIGRLLELKYGDETLHLNPPLEYVPWVTVNNKALREDYEKFVEYVCGAYKGG 220
+++C GR L G +T L P ++++PW+ +N + + VC A +
Sbjct: 252 RMRECASGTRGRRLLALSGQKTASLTPAIDFIPWIVINGSRNSDALYDLTQNVCEAMQP- 310
Query: 221 HVPEACK 227
+P ACK
Sbjct: 311 -MPSACK 316
>sp|Q61Z40|YO30_CAEBR GILT-like protein CBG03282 OS=Caenorhabditis briggsae GN=CBG03282
PE=3 SV=1
Length = 220
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 89/213 (41%), Gaps = 19/213 (8%)
Query: 11 VFTSLMFMFISSPCSCVEYDGATNLPPPKHNDNVNLSLYYETLCPGCAEFISEGLGKLFE 70
+F F+FI CS D N + + VN+ + E C + ++ ++
Sbjct: 7 LFVYYSFLFILVLCS--SKDTEVN-----NGEKVNIVAFGEGRCSDTSFWMKWHWLPMWR 59
Query: 71 K-GLISIVNLRLIPWG-NAKIVEPNKTID----CQHGEDECYFNTIEACAILAWPDQPKN 124
G +N P+G V+ + D C HG EC N ++AC I A P+ +
Sbjct: 60 MLGSTGRINFEYHPYGIKTTCVDSDSGDDVVCECHHGARECLLNQLQACVIEALPN-FEE 118
Query: 125 HFDFIQCLENRTLRGPIRDRKEAWLTCCKDLELSPNFIKDCYESGIGRLLELKYGDETLH 184
+ + + C++ + I EA LE + + C +S GR L + +
Sbjct: 119 YMEVVTCIQGKQ---NISMAAEACFNEPSKLERAK--MMSCADSRHGRKLFSDHENFVAQ 173
Query: 185 LNPPLEYVPWVTVNNKALREDYEKFVEYVCGAY 217
+ P +++ PW+ +N K +E E +++C +
Sbjct: 174 MAPEMDWAPWILINGKRYKEAEEDLWQFLCDRF 206
>sp|Q23570|YO30_CAEEL GILT-like protein ZK669.3 OS=Caenorhabditis elegans GN=ZK669.3 PE=1
SV=1
Length = 218
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 58/122 (47%), Gaps = 8/122 (6%)
Query: 97 DCQHGEDECYFNTIEACAILAWPDQPKNHFDFIQCLENRTLRGPIRDRKEAWLTCCKD-L 155
DC HG EC N ++AC I A P+ +++ + + C++ + ++ A C +
Sbjct: 90 DCHHGNRECLLNQLQACVIEALPN-FEDYMEVVTCIQGK------QNISMAAEVCFEGPT 142
Query: 156 ELSPNFIKDCYESGIGRLLELKYGDETLHLNPPLEYVPWVTVNNKALREDYEKFVEYVCG 215
+L + +C ES GR L + + P +++ PW+ +N +E E +++C
Sbjct: 143 KLDRTKMMECAESRHGRKLFSDQENIVAQMAPEMDWAPWILINGTRYKEAEEDLWQFLCD 202
Query: 216 AY 217
+
Sbjct: 203 RF 204
>sp|Q4JVB1|DUT_CORJK Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Corynebacterium
jeikeium (strain K411) GN=dut PE=3 SV=1
Length = 155
Score = 37.0 bits (84), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 41/106 (38%), Gaps = 11/106 (10%)
Query: 22 SPCSCVEYDGATNLPPPKHNDNVNLSLYYE---TLCPGCAEFISEGLGKLFEKGLISIVN 78
+P V D LP H + + LY T+ PGC E + G+ G + +V+
Sbjct: 10 APLRIVRLDKELPLPRRAHPTDAGIDLYTAQDVTIAPGCRELVGTGIAIALPVGTVGLVH 69
Query: 79 LR--LIPWGNAKIVEPNKTIDCQHGEDECYFNTIEACAILAWPDQP 122
R L IV TID Y I+ C I P++P
Sbjct: 70 PRSGLALKKGLSIVNAPGTIDAD------YRGEIKVCLINLDPEEP 109
>sp|P19477|FIBA_PARPA Fibrinogen-like protein A OS=Parastichopus parvimensis PE=2 SV=1
Length = 282
Score = 31.2 bits (69), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 112 ACAILAWPDQPKNHFDFIQCLENRTLRGPI-RDRKEAWLTCCKDLELSPNFIKDCYE 167
C +P N + E R+L P R ++++ L+C K + SP + +DCY+
Sbjct: 16 GCISFCISSEPLNESEITFEREERSLADPAGRQKRQSGLSCPKRISHSPEYPRDCYD 72
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.140 0.457
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,723,832
Number of Sequences: 539616
Number of extensions: 4158869
Number of successful extensions: 7025
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 6992
Number of HSP's gapped (non-prelim): 11
length of query: 236
length of database: 191,569,459
effective HSP length: 114
effective length of query: 122
effective length of database: 130,053,235
effective search space: 15866494670
effective search space used: 15866494670
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)