Query 040358
Match_columns 236
No_of_seqs 106 out of 401
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 07:40:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040358.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040358hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3160 Gamma-interferon induc 100.0 1.1E-51 2.4E-56 356.8 15.3 183 37-227 34-217 (220)
2 PF03227 GILT: Gamma interfero 100.0 1.8E-36 3.9E-41 236.2 8.2 106 44-157 1-107 (108)
3 cd03023 DsbA_Com1_like DsbA fa 98.9 5.8E-08 1.3E-12 77.2 13.6 150 38-212 1-152 (154)
4 PF13462 Thioredoxin_4: Thiore 98.7 3.5E-08 7.5E-13 79.7 7.8 154 33-213 3-160 (162)
5 cd03019 DsbA_DsbA DsbA family, 98.7 1.6E-07 3.6E-12 77.0 10.5 138 41-202 14-154 (178)
6 PRK10954 periplasmic protein d 98.3 4.7E-06 1E-10 71.5 10.1 139 42-202 37-178 (207)
7 cd03024 DsbA_FrnE DsbA family, 98.0 0.00018 3.8E-09 60.4 12.4 163 46-213 1-200 (201)
8 PF01323 DSBA: DSBA-like thior 97.5 0.00054 1.2E-08 56.8 8.4 159 45-212 1-191 (193)
9 cd03022 DsbA_HCCA_Iso DsbA fam 97.3 0.0063 1.4E-07 50.4 12.5 75 124-202 101-178 (192)
10 COG1651 DsbG Protein-disulfide 97.2 0.0033 7.1E-08 54.6 10.0 156 34-213 76-239 (244)
11 cd03025 DsbA_FrnE_like DsbA fa 97.2 0.0033 7.1E-08 52.2 9.5 152 44-201 1-179 (193)
12 PF13743 Thioredoxin_5: Thiore 97.0 0.0053 1.2E-07 51.5 9.1 145 48-199 2-155 (176)
13 COG2761 FrnE Predicted dithiol 96.3 0.035 7.5E-07 48.8 9.3 173 40-218 2-214 (225)
14 PRK10877 protein disulfide iso 93.4 0.84 1.8E-05 40.0 10.0 45 38-87 103-147 (232)
15 PF07172 GRP: Glycine rich pro 92.6 0.078 1.7E-06 40.5 2.0 27 1-28 1-27 (95)
16 PRK11657 dsbG disulfide isomer 91.7 0.39 8.5E-06 42.6 5.7 49 34-86 109-157 (251)
17 cd03020 DsbA_DsbC_DsbG DsbA fa 87.8 1 2.2E-05 37.9 4.9 46 36-87 71-116 (197)
18 cd02972 DsbA_family DsbA famil 87.5 0.85 1.8E-05 32.3 3.7 40 46-87 1-40 (98)
19 cd03021 DsbA_GSTK DsbA family, 86.4 1.2 2.5E-05 37.9 4.6 51 147-199 134-187 (209)
20 PF14595 Thioredoxin_9: Thiore 81.9 2.9 6.3E-05 33.3 4.8 44 39-85 38-81 (129)
21 cd02973 TRX_GRX_like Thioredox 80.9 3.1 6.7E-05 28.2 4.1 18 44-61 1-18 (67)
22 KOG1752 Glutaredoxin and relat 79.2 3.2 6.8E-05 32.2 4.0 31 168-203 49-79 (104)
23 TIGR00411 redox_disulf_1 small 78.8 4 8.6E-05 28.5 4.2 25 44-69 1-25 (82)
24 TIGR02189 GlrX-like_plant Glut 77.8 4.2 9.1E-05 30.7 4.3 50 148-203 24-73 (99)
25 cd03027 GRX_DEP Glutaredoxin ( 73.4 7.8 0.00017 27.0 4.5 49 146-203 15-63 (73)
26 cd03026 AhpF_NTD_C TRX-GRX-lik 73.2 7 0.00015 28.9 4.3 41 40-83 10-50 (89)
27 PF13905 Thioredoxin_8: Thiore 72.4 12 0.00026 26.9 5.4 41 42-84 1-43 (95)
28 KOG2501 Thioredoxin, nucleored 66.5 4.1 8.8E-05 34.0 2.0 61 42-104 33-95 (157)
29 PHA03050 glutaredoxin; Provisi 65.4 11 0.00023 29.1 4.1 28 171-203 54-81 (108)
30 TIGR02190 GlrX-dom Glutaredoxi 63.6 6.2 0.00013 28.1 2.3 23 39-61 3-25 (79)
31 PRK11200 grxA glutaredoxin 1; 63.0 9.5 0.00021 27.4 3.2 23 189-212 56-78 (85)
32 TIGR02200 GlrX_actino Glutared 58.8 6.8 0.00015 26.9 1.7 16 45-60 1-16 (77)
33 PF13192 Thioredoxin_3: Thiore 57.9 10 0.00022 26.9 2.6 14 188-201 46-59 (76)
34 cd03028 GRX_PICOT_like Glutare 57.9 27 0.00059 25.5 4.9 49 146-203 27-75 (90)
35 PF13098 Thioredoxin_2: Thiore 57.6 28 0.00061 25.7 5.1 28 40-68 3-30 (112)
36 cd02066 GRX_family Glutaredoxi 56.6 7.3 0.00016 25.8 1.6 17 45-61 1-17 (72)
37 PRK10824 glutaredoxin-4; Provi 56.6 40 0.00087 26.4 5.9 65 146-219 34-109 (115)
38 PF00462 Glutaredoxin: Glutare 53.7 11 0.00023 25.1 2.0 16 46-61 1-16 (60)
39 cd03419 GRX_GRXh_1_2_like Glut 53.0 10 0.00022 26.5 1.9 17 45-61 1-17 (82)
40 cd02949 TRX_NTR TRX domain, no 51.1 45 0.00097 24.2 5.2 34 40-75 11-44 (97)
41 cd03418 GRX_GRXb_1_3_like Glut 51.1 9.9 0.00021 26.2 1.5 13 191-203 51-63 (75)
42 PHA03050 glutaredoxin; Provisi 49.4 11 0.00023 29.1 1.6 17 45-61 14-30 (108)
43 cd02964 TryX_like_family Trypa 47.9 30 0.00064 26.8 4.0 47 34-82 9-56 (132)
44 TIGR02189 GlrX-like_plant Glut 47.9 12 0.00025 28.3 1.6 17 45-61 9-25 (99)
45 cd03027 GRX_DEP Glutaredoxin ( 47.3 15 0.00032 25.5 2.0 17 45-61 2-18 (73)
46 cd02995 PDI_a_PDI_a'_C PDIa fa 47.1 43 0.00093 24.0 4.6 37 43-81 19-55 (104)
47 TIGR00365 monothiol glutaredox 47.1 41 0.00089 25.1 4.5 48 147-203 32-79 (97)
48 TIGR02180 GRX_euk Glutaredoxin 46.6 13 0.00028 26.0 1.5 16 46-61 1-16 (84)
49 COG0695 GrxC Glutaredoxin and 46.5 12 0.00027 27.0 1.5 16 188-203 50-65 (80)
50 PF13728 TraF: F plasmid trans 45.9 22 0.00047 30.8 3.1 43 37-85 115-157 (215)
51 PRK11200 grxA glutaredoxin 1; 45.7 16 0.00034 26.2 1.9 17 45-61 2-18 (85)
52 cd03012 TlpA_like_DipZ_like Tl 45.5 45 0.00097 25.5 4.6 40 40-82 21-60 (126)
53 TIGR02196 GlrX_YruB Glutaredox 44.0 13 0.00029 24.7 1.3 15 46-60 2-16 (74)
54 cd02965 HyaE HyaE family; HyaE 43.9 32 0.00069 26.9 3.5 35 41-77 26-62 (111)
55 cd02976 NrdH NrdH-redoxin (Nrd 43.3 18 0.00039 24.0 1.8 16 45-60 1-16 (73)
56 TIGR02181 GRX_bact Glutaredoxi 42.4 15 0.00032 25.8 1.3 15 189-203 47-61 (79)
57 cd02953 DsbDgamma DsbD gamma f 42.3 40 0.00087 24.7 3.8 21 41-61 10-30 (104)
58 PRK13728 conjugal transfer pro 42.2 42 0.00091 28.5 4.2 34 46-85 73-106 (181)
59 cd03029 GRX_hybridPRX5 Glutare 42.1 19 0.00042 24.7 1.9 15 189-203 48-62 (72)
60 PRK13703 conjugal pilus assemb 41.6 21 0.00045 31.9 2.4 38 42-85 143-180 (248)
61 PTZ00443 Thioredoxin domain-co 41.6 1.5E+02 0.0034 25.8 7.9 20 42-61 52-71 (224)
62 PRK10638 glutaredoxin 3; Provi 41.3 19 0.00041 25.7 1.8 16 45-60 3-18 (83)
63 COG4545 Glutaredoxin-related p 41.2 18 0.00039 26.7 1.6 19 47-66 5-23 (85)
64 TIGR01126 pdi_dom protein disu 40.1 53 0.0011 23.3 4.1 21 41-61 12-32 (102)
65 cd02996 PDI_a_ERp44 PDIa famil 39.7 73 0.0016 23.5 4.9 20 42-61 18-37 (108)
66 TIGR02183 GRXA Glutaredoxin, G 39.6 19 0.0004 26.2 1.5 22 190-212 56-77 (86)
67 cd03004 PDI_a_ERdj5_C PDIa fam 39.1 59 0.0013 23.6 4.3 21 41-61 18-38 (104)
68 PF00085 Thioredoxin: Thioredo 39.1 56 0.0012 23.2 4.1 32 42-75 17-48 (103)
69 TIGR02739 TraF type-F conjugat 38.8 24 0.00052 31.6 2.4 40 40-85 148-187 (256)
70 PRK03147 thiol-disulfide oxido 38.2 1.3E+02 0.0028 23.9 6.5 34 40-75 59-92 (173)
71 cd02950 TxlA TRX-like protein 38.0 74 0.0016 25.3 4.9 22 40-61 18-39 (142)
72 PF11287 DUF3088: Protein of u 37.8 17 0.00037 28.6 1.1 34 52-88 22-55 (112)
73 cd03006 PDI_a_EFP1_N PDIa fami 37.7 65 0.0014 24.8 4.4 23 39-61 26-48 (113)
74 cd02951 SoxW SoxW family; SoxW 37.3 59 0.0013 24.7 4.1 19 43-61 15-33 (125)
75 PRK09381 trxA thioredoxin; Pro 35.8 98 0.0021 22.7 5.1 32 42-75 21-52 (109)
76 cd03031 GRX_GRX_like Glutaredo 35.8 44 0.00096 27.3 3.3 14 190-203 59-72 (147)
77 cd03009 TryX_like_TryX_NRX Try 35.6 59 0.0013 24.8 3.9 33 37-70 13-45 (131)
78 cd01659 TRX_superfamily Thiore 34.5 67 0.0014 19.3 3.5 22 46-68 1-22 (69)
79 PRK12759 bifunctional gluaredo 34.4 50 0.0011 31.3 3.9 56 147-203 17-72 (410)
80 cd02961 PDI_a_family Protein D 33.4 1.1E+02 0.0025 21.0 4.9 27 43-70 16-42 (101)
81 TIGR01295 PedC_BrcD bacterioci 32.7 33 0.00072 26.7 2.1 20 42-61 23-42 (122)
82 cd03001 PDI_a_P5 PDIa family, 32.3 1.2E+02 0.0025 21.7 4.9 20 42-61 18-37 (103)
83 cd02969 PRX_like1 Peroxiredoxi 32.1 89 0.0019 25.1 4.6 40 41-83 24-63 (171)
84 cd03003 PDI_a_ERdj5_N PDIa fam 32.0 1.3E+02 0.0028 21.7 5.1 20 42-61 18-37 (101)
85 cd02975 PfPDO_like_N Pyrococcu 31.7 90 0.002 23.7 4.3 19 42-60 21-40 (113)
86 cd02998 PDI_a_ERp38 PDIa famil 31.4 83 0.0018 22.4 4.0 20 42-61 18-37 (105)
87 PRK10329 glutaredoxin-like pro 30.9 37 0.00081 24.5 1.9 16 45-60 2-17 (81)
88 KOG3425 Uncharacterized conser 30.3 69 0.0015 25.8 3.4 35 51-87 42-76 (128)
89 PRK15317 alkyl hydroperoxide r 29.2 81 0.0018 30.5 4.5 22 40-61 114-135 (517)
90 cd02999 PDI_a_ERp44_like PDIa 28.9 1.3E+02 0.0027 22.3 4.6 22 40-61 16-37 (100)
91 cd03002 PDI_a_MPD1_like PDI fa 28.8 1.2E+02 0.0026 22.0 4.5 21 41-61 17-37 (109)
92 TIGR01068 thioredoxin thioredo 28.5 1.3E+02 0.0027 21.1 4.5 26 42-68 14-39 (101)
93 cd02993 PDI_a_APS_reductase PD 28.5 46 0.001 24.8 2.2 23 39-61 18-40 (109)
94 cd03008 TryX_like_RdCVF Trypar 28.1 1.1E+02 0.0023 24.9 4.4 30 40-70 23-52 (146)
95 PF07511 DUF1525: Protein of u 27.6 59 0.0013 25.6 2.6 30 173-202 65-94 (114)
96 TIGR02194 GlrX_NrdH Glutaredox 27.2 35 0.00077 23.5 1.2 15 46-60 1-15 (72)
97 cd02968 SCO SCO (an acronym fo 27.1 1.1E+02 0.0024 23.3 4.2 41 41-83 21-64 (142)
98 PF00578 AhpC-TSA: AhpC/TSA fa 26.7 1.1E+02 0.0024 22.6 4.1 32 41-74 24-56 (124)
99 cd02997 PDI_a_PDIR PDIa family 26.7 1E+02 0.0022 22.0 3.7 27 42-69 17-43 (104)
100 KOG1731 FAD-dependent sulfhydr 26.6 36 0.00078 34.0 1.5 18 43-60 58-75 (606)
101 cd02954 DIM1 Dim1 family; Dim1 25.6 1.4E+02 0.0031 23.2 4.5 33 41-75 13-45 (114)
102 PTZ00051 thioredoxin; Provisio 25.6 1.7E+02 0.0038 20.7 4.8 28 41-69 17-44 (98)
103 cd03040 GST_N_mPGES2 GST_N fam 25.4 49 0.0011 22.8 1.7 15 46-60 2-16 (77)
104 cd02948 TRX_NDPK TRX domain, T 25.2 2.1E+02 0.0046 20.9 5.3 29 41-70 16-44 (102)
105 cd02962 TMX2 TMX2 family; comp 23.6 2.9E+02 0.0064 22.4 6.2 21 41-61 46-66 (152)
106 PRK10996 thioredoxin 2; Provis 23.3 1.6E+02 0.0036 23.1 4.6 30 40-70 50-79 (139)
107 TIGR02187 GlrX_arch Glutaredox 23.1 1.4E+02 0.003 25.3 4.4 21 40-60 131-151 (215)
108 PF15202 Adipogenin: Adipogeni 23.1 53 0.0011 23.8 1.4 20 2-21 13-34 (81)
109 cd03010 TlpA_like_DsbE TlpA-li 23.0 1.1E+02 0.0025 23.0 3.5 26 41-67 24-49 (127)
110 TIGR03757 conj_TIGR03757 integ 22.9 76 0.0016 25.0 2.4 38 165-202 54-95 (113)
111 COG3917 NahD 2-hydroxychromene 22.8 3.3E+02 0.0071 23.5 6.4 57 144-202 131-187 (203)
112 cd02966 TlpA_like_family TlpA- 22.6 2.5E+02 0.0054 19.5 5.2 30 40-70 17-46 (116)
113 cd02956 ybbN ybbN protein fami 22.4 2E+02 0.0043 20.3 4.6 21 41-61 11-31 (96)
114 PTZ00102 disulphide isomerase; 22.4 64 0.0014 30.4 2.3 21 41-61 48-68 (477)
115 cd02967 mauD Methylamine utili 21.8 1.8E+02 0.0038 21.3 4.3 20 42-61 21-40 (114)
116 PF13417 GST_N_3: Glutathione 21.7 1.3E+02 0.0028 20.6 3.3 31 188-219 43-73 (75)
117 cd02992 PDI_a_QSOX PDIa family 21.4 2.8E+02 0.0061 20.9 5.4 20 42-61 19-38 (114)
118 PF13198 DUF4014: Protein of u 21.1 54 0.0012 23.7 1.2 17 4-21 16-32 (72)
119 cd02947 TRX_family TRX family; 20.1 2.8E+02 0.006 18.4 4.9 19 43-61 11-29 (93)
No 1
>KOG3160 consensus Gamma-interferon inducible lysosomal thiol reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-51 Score=356.83 Aligned_cols=183 Identities=38% Similarity=0.790 Sum_probs=163.8
Q ss_pred CCCCCCceEEEEEEEecChhhHHHHHhhhHHHHHhcccceeeEEEEeeecceeecCCCceeccCCchhhccChhhhhHhh
Q 040358 37 PPKHNDNVNLSLYYETLCPGCAEFISEGLGKLFEKGLISIVNLRLIPWGNAKIVEPNKTIDCQHGEDECYFNTIEACAIL 116 (236)
Q Consensus 37 ~~~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lvP~G~a~~~~~~~~f~CQHG~~EC~gN~~qaCai~ 116 (236)
.+.+.+||+|++|||||||||++||++||+|+|...+.+++||++||||||+..+..++|+||||+.||.+|++|||+|+
T Consensus 34 ~~~~~~~v~ItlyyEaLCPdc~~Fi~~qL~p~~~~~~~~~idl~lvPfGna~~~~~~~~~~CqHG~~EC~lN~LqaCvI~ 113 (220)
T KOG3160|consen 34 KGSQAPKVNITLYYEALCPDCSKFIRNQLYPFFDNLLPSILDLTLVPFGNAQCRNDGGTFTCQHGEEECKLNKLQACVID 113 (220)
T ss_pred ccccCCeeEEEEEEEecCccHHHHHHHHHHHHHhhcccceeEEEEEccCCceeecCceEEEecCCHHHHhhhHHHHHHHH
Confidence 46667799999999999999999999999999986578999999999999965443378999999999999999999999
Q ss_pred hCCCCCCCchhhhhhhhcccCCCCCcchhHHHHHHHHhcCCChhhHhhcccCchhHHHHHHHHhhhhhcCCCCceeeEEE
Q 040358 117 AWPDQPKNHFDFIQCLENRTLRGPIRDRKEAWLTCCKDLELSPNFIKDCYESGIGRLLELKYGDETLHLNPPLEYVPWVT 196 (236)
Q Consensus 117 ~~~~~~~~~~~fI~Cm~~~~~~~~~~~~~~~~~~Ca~~~g~d~~~I~~C~~~~~G~~Ll~~~~~~T~~l~p~~~~VPwI~ 196 (236)
++++. ..+++||.||++. .....+.+|+++.+.++..|++|++|++|.+|+.++|.+|.++.|+|.|||||+
T Consensus 114 ~l~~~-~~~l~~i~C~~~~-------~~~~~~~~C~~~~~~~~~~i~~Ca~s~~g~~L~~~~~~~T~~~~p~~~~VPwi~ 185 (220)
T KOG3160|consen 114 TLPDQ-SDQLPFIRCIQGK-------QKLSEAEDCLEKYGLNEKKIRECANSRLGAKLLLKYAQETAALAPPHPWVPWIL 185 (220)
T ss_pred hhhch-Hhhhceehhhhcc-------cchhHHHHHHhhcCCCHHHHHHHhcCchHHHHHHHHHHhhcccCCCCCCcCeEE
Confidence 99987 9999999999984 233445679999999999999999999999999999999999999999999999
Q ss_pred ECCeechhhHHHHHHHHHHhccCCC-CCCCCC
Q 040358 197 VNNKALREDYEKFVEYVCGAYKGGH-VPEACK 227 (236)
Q Consensus 197 ING~~~~~~~~nL~~~IC~~y~~~~-~P~~C~ 227 (236)
|||++..++..+|.+.+|..|++.. +|..|.
T Consensus 186 vNg~~~~~~~~~l~~~~C~~~~~~~~~~~~~~ 217 (220)
T KOG3160|consen 186 VNGQPLQDAEQDLVTLLCEAYKGKKQKPLKCQ 217 (220)
T ss_pred ECCcchHHHHHHHHHHHHHHHhhccccCcccc
Confidence 9999999998899999999999832 354443
No 2
>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]. It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
Probab=100.00 E-value=1.8e-36 Score=236.18 Aligned_cols=106 Identities=42% Similarity=0.851 Sum_probs=90.8
Q ss_pred eEEEEEEEecChhhHHHHHhhhHHHHH-hcccceeeEEEEeeecceeecCCCceeccCCchhhccChhhhhHhhhCCCCC
Q 040358 44 VNLSLYYETLCPGCAEFISEGLGKLFE-KGLISIVNLRLIPWGNAKIVEPNKTIDCQHGEDECYFNTIEACAILAWPDQP 122 (236)
Q Consensus 44 V~V~vyyESlCPd~~~Fi~~qL~P~~~-~~l~d~vdl~lvP~G~a~~~~~~~~f~CQHG~~EC~gN~~qaCai~~~~~~~ 122 (236)
|+|+|||||+||||++||++||+|+|. .++.++|||++||||||+....+++|+||||+.||+||++|+|+++++++.
T Consensus 1 V~v~vyyESlCPd~~~fi~~~L~p~~~~~~~~~~~~l~lvP~G~a~~~~~~~~~~CqHG~~EC~gN~~q~C~l~~~~~~- 79 (108)
T PF03227_consen 1 VNVEVYYESLCPDCRRFITNQLFPVWTYEKLSDIMNLTLVPFGNAKVSSSGNEFTCQHGPDECYGNKLQACALKHLPDT- 79 (108)
T ss_pred CEEEEEEEecCHhHHHHHHHHHHHHHHHhhccceEEEEEEEEeccEEecCCceeecCCcHHHHHcCHHHHhHHHhcCCh-
Confidence 799999999999999999999999773 269999999999999996654444599999999999999999999999987
Q ss_pred CCchhhhhhhhcccCCCCCcchhHHHHHHHHhcCC
Q 040358 123 KNHFDFIQCLENRTLRGPIRDRKEAWLTCCKDLEL 157 (236)
Q Consensus 123 ~~~~~fI~Cm~~~~~~~~~~~~~~~~~~Ca~~~g~ 157 (236)
..||+||.||+++. +...... |+++.+.
T Consensus 80 ~~~~~~i~Cm~~~~------~~~~~~~-Ca~~~~~ 107 (108)
T PF03227_consen 80 NAALPFIACMESSQ------DFPKAIK-CAKKYGI 107 (108)
T ss_pred hhhcCEEEEEcCCC------CCchhhh-hHHhcCC
Confidence 88899999999872 1222333 9998875
No 3
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=98.89 E-value=5.8e-08 Score=77.23 Aligned_cols=150 Identities=13% Similarity=0.109 Sum_probs=98.9
Q ss_pred CCCCCceEEEEEEEecChhhHHHHHhhhHHHHHhcccceeeEEEEeeecceeecCCCceeccCCchhhccChhhhhHhhh
Q 040358 38 PKHNDNVNLSLYYETLCPGCAEFISEGLGKLFEKGLISIVNLRLIPWGNAKIVEPNKTIDCQHGEDECYFNTIEACAILA 117 (236)
Q Consensus 38 ~~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lvP~G~a~~~~~~~~f~CQHG~~EC~gN~~qaCai~~ 117 (236)
|..+.+++|.+|+.-.||+|++|. ..|...+.+ ..+ +++.++||.-... ... ..-+.-.|+...
T Consensus 1 G~~~a~~~i~~f~D~~Cp~C~~~~-~~l~~~~~~-~~~-~~~~~~~~p~~~~---~~~----------~~~~~~~~~~~~ 64 (154)
T cd03023 1 GNPNGDVTIVEFFDYNCGYCKKLA-PELEKLLKE-DPD-VRVVFKEFPILGE---SSV----------LAARVALAVWKN 64 (154)
T ss_pred CCCCCCEEEEEEECCCChhHHHhh-HHHHHHHHH-CCC-ceEEEEeCCccCc---chH----------HHHHHHHHHHHh
Confidence 456789999999999999999996 566665543 444 5666666632100 100 001111233221
Q ss_pred CCCCCCCchhhhhhhhcccCCCCCcchhHHHHHHHHhcCCChhhHhhcccCchhHHHHHHHHhhhhhcCCCCceeeEEEE
Q 040358 118 WPDQPKNHFDFIQCLENRTLRGPIRDRKEAWLTCCKDLELSPNFIKDCYESGIGRLLELKYGDETLHLNPPLEYVPWVTV 197 (236)
Q Consensus 118 ~~~~~~~~~~fI~Cm~~~~~~~~~~~~~~~~~~Ca~~~g~d~~~I~~C~~~~~G~~Ll~~~~~~T~~l~p~~~~VPwI~I 197 (236)
+. ..+++|..=++... .. .....+...+++.|++.+.+.+|.++.+....+.+..+....+ ++..+||++|
T Consensus 65 --~~-~~~~~~~~~lf~~~-~~---~~~~~l~~~a~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--gi~gtPt~~v 135 (154)
T cd03023 65 --GP-GKYLEFHNALMATR-GR---LNEESLLRIAKKAGLDEAKLKKDMDDPEIEATIDKNRQLARAL--GITGTPAFII 135 (154)
T ss_pred --Ch-hHHHHHHHHHHhcC-CC---CCHHHHHHHHHHcCCCHHHHHHHhhChHHHHHHHHHHHHHHHc--CCCcCCeEEE
Confidence 22 56788877766541 11 2234466788999999999999999988888888877776655 6899999999
Q ss_pred CCeechh--hHHHHHHH
Q 040358 198 NNKALRE--DYEKFVEY 212 (236)
Q Consensus 198 NG~~~~~--~~~nL~~~ 212 (236)
||+.... ..+.|.+.
T Consensus 136 ~g~~~~G~~~~~~l~~~ 152 (154)
T cd03023 136 GDTVIPGAVPADTLKEA 152 (154)
T ss_pred CCEEecCCCCHHHHHHH
Confidence 9997532 34555544
No 4
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=98.74 E-value=3.5e-08 Score=79.72 Aligned_cols=154 Identities=18% Similarity=0.193 Sum_probs=100.2
Q ss_pred CCCCCCCCCCceEEEEEEEecChhhHHHHHhhhHHHHHhcc--cceeeEEEEeeecceeecCCCceeccCCchhhccChh
Q 040358 33 TNLPPPKHNDNVNLSLYYETLCPGCAEFISEGLGKLFEKGL--ISIVNLRLIPWGNAKIVEPNKTIDCQHGEDECYFNTI 110 (236)
Q Consensus 33 ~~~~~~~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~l--~d~vdl~lvP~G~a~~~~~~~~f~CQHG~~EC~gN~~ 110 (236)
.++..|..+.++.|++|..-.||+|++|. ..+.+.+++ + .+.+.|.++|+-... |+ ...+-..
T Consensus 3 ~~~~~G~~~a~~~v~~f~d~~Cp~C~~~~-~~~~~~~~~-~i~~~~v~~~~~~~~~~~-----------~~--~~~a~~~ 67 (162)
T PF13462_consen 3 YDPTIGNPDAPITVTEFFDFQCPHCAKFH-EELEKLLKK-YIDPGKVKFVFRPVPLDK-----------HS--SLRAAMA 67 (162)
T ss_dssp TSEEES-TTTSEEEEEEE-TTSHHHHHHH-HHHHHHHHH-HTTTTTEEEEEEESSSSH-----------HH--HHHHHHH
T ss_pred CCCeecCCCCCeEEEEEECCCCHhHHHHH-HHHhhhhhh-ccCCCceEEEEEEccccc-----------hh--HHHHHHH
Confidence 35567888999999999999999999997 456677764 6 567888888774221 11 4445555
Q ss_pred hhhHhhhCCCCCCCchhhhhhhhcccCCCCCcchhHHHHHHHHhcCCChhhHhhcccCchhHHHHHHHHhhhhhcCCCCc
Q 040358 111 EACAILAWPDQPKNHFDFIQCLENRTLRGPIRDRKEAWLTCCKDLELSPNFIKDCYESGIGRLLELKYGDETLHLNPPLE 190 (236)
Q Consensus 111 qaCai~~~~~~~~~~~~fI~Cm~~~~~~~~~~~~~~~~~~Ca~~~g~d~~~I~~C~~~~~G~~Ll~~~~~~T~~l~p~~~ 190 (236)
..|+.+.- ..++.+..-+... +.... .. ..=++..+.+.+.+.+|+++.+-...+.+..+.+... ++.
T Consensus 68 ~~~~~~~~----~~~~~~~~~~~~~-~~~~~-~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~ 135 (162)
T PF13462_consen 68 AECVADQG----KYFWFFHELLFSQ-QENFE-NK----KDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQL--GIT 135 (162)
T ss_dssp HHHHHHHT----HHHHHHHHHHHHH-CHSTS-SH----HHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHH--T-S
T ss_pred HHHHHHHh----HHHHHHHHHHHHh-hhccc-hh----HHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHc--CCc
Confidence 56666542 2345555555544 22221 11 1222445556788999998887777777766666554 689
Q ss_pred eeeEEEECCeechh--hHHHHHHHH
Q 040358 191 YVPWVTVNNKALRE--DYEKFVEYV 213 (236)
Q Consensus 191 ~VPwI~ING~~~~~--~~~nL~~~I 213 (236)
.+|+|+|||+++.. +.+.|...|
T Consensus 136 ~tPt~~inG~~~~~~~~~~~l~~~I 160 (162)
T PF13462_consen 136 GTPTFFINGKYVVGPYTIEELKELI 160 (162)
T ss_dssp SSSEEEETTCEEETTTSHHHHHHHH
T ss_pred cccEEEECCEEeCCCCCHHHHHHHH
Confidence 99999999999753 566776665
No 5
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=98.69 E-value=1.6e-07 Score=77.02 Aligned_cols=138 Identities=14% Similarity=0.047 Sum_probs=93.3
Q ss_pred CCceEEEEEEEecChhhHHHHHhhhHHHHHhcccceeeEEEEeeecceeecCCCceeccCCchhhccChhhhhHhhhCCC
Q 040358 41 NDNVNLSLYYETLCPGCAEFISEGLGKLFEKGLISIVNLRLIPWGNAKIVEPNKTIDCQHGEDECYFNTIEACAILAWPD 120 (236)
Q Consensus 41 ~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lvP~G~a~~~~~~~~f~CQHG~~EC~gN~~qaCai~~~~~ 120 (236)
+.+|+|.+|+.-.||+|++|. ..+.+.+.+ ..+.+.|+++|+..... .+. ...+..+.+.. .
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~-~~~~~~~~~-~~~~v~~~~~~~~~~~~---~~~----------~aa~a~~aa~~-~-- 75 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFE-PILEAWVKK-LPKDVKFEKVPVVFGGG---EGE----------PLARAFYAAEA-L-- 75 (178)
T ss_pred CCCcEEEEEECCCCcchhhhh-HHHHHHHHh-CCCCceEEEcCCccccc---cch----------HHHHHHHHHHH-c--
Confidence 789999999999999999997 678888874 67788899988764421 000 01111111211 1
Q ss_pred CCCCchhhhhhhhccc---CCCCCcchhHHHHHHHHhcCCChhhHhhcccCchhHHHHHHHHhhhhhcCCCCceeeEEEE
Q 040358 121 QPKNHFDFIQCLENRT---LRGPIRDRKEAWLTCCKDLELSPNFIKDCYESGIGRLLELKYGDETLHLNPPLEYVPWVTV 197 (236)
Q Consensus 121 ~~~~~~~fI~Cm~~~~---~~~~~~~~~~~~~~Ca~~~g~d~~~I~~C~~~~~G~~Ll~~~~~~T~~l~p~~~~VPwI~I 197 (236)
..++.|..=++... ...+ ...+.+...+++.|++.+.+.+|.++.+-.+.+.+..+....+ ++..+||++|
T Consensus 76 --~~~~~~~~~lf~~~~~~~~~~--~~~~~l~~~a~~~Gl~~~~~~~~~~s~~~~~~i~~~~~~~~~~--gi~gTPt~iI 149 (178)
T cd03019 76 --GLEDKLHAALFEAIHEKRKRL--LDPDDIRKIFLSQGVDKKKFDAAYNSFSVKALVAKAEKLAKKY--KITGVPAFVV 149 (178)
T ss_pred --CcHhhhhHHHHHHHHHhCCCC--CCHHHHHHHHHHhCCCHHHHHHHHhCHHHHHHHHHHHHHHHHc--CCCCCCeEEE
Confidence 22334433333211 1111 2245688999999999999999999888777777766666554 6899999999
Q ss_pred CCeec
Q 040358 198 NNKAL 202 (236)
Q Consensus 198 NG~~~ 202 (236)
||++.
T Consensus 150 nG~~~ 154 (178)
T cd03019 150 NGKYV 154 (178)
T ss_pred CCEEE
Confidence 99974
No 6
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=98.32 E-value=4.7e-06 Score=71.47 Aligned_cols=139 Identities=12% Similarity=0.041 Sum_probs=83.5
Q ss_pred CceEEEEEEEecChhhHHHHHhhh--HHHHHhcccceeeEEEEeeecceeecCCC-ceeccCCchhhccChhhhhHhhhC
Q 040358 42 DNVNLSLYYETLCPGCAEFISEGL--GKLFEKGLISIVNLRLIPWGNAKIVEPNK-TIDCQHGEDECYFNTIEACAILAW 118 (236)
Q Consensus 42 ~kV~V~vyyESlCPd~~~Fi~~qL--~P~~~~~l~d~vdl~lvP~G~a~~~~~~~-~f~CQHG~~EC~gN~~qaCai~~~ 118 (236)
.+.+|..|..-.||+|.+|.. .| .+.|.+.+.+-+.+..+|+.-........ .. .-..+|.+.. +.+
T Consensus 37 ~~~~VvEffdy~CphC~~~~~-~l~~~~~~~~~~~~~v~~~~~~~~f~~~~~~~~~~a---~~~a~~~~~~------~k~ 106 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEE-VYHVSDNVKKKLPEGTKMTKYHVEFLGPLGKELTQA---WAVAMALGVE------DKV 106 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcc-cccchHHHHHhCCCCCeEEEecccccchhhHHHHHH---HHHHHHhCcH------HHH
Confidence 467899999999999999963 33 36776656666666655542110000000 00 0012232210 000
Q ss_pred CCCCCCchhhhhhhhcccCCCCCcchhHHHHHHHHhcCCChhhHhhcccCchhHHHHHHHHhhhhhcCCCCceeeEEEEC
Q 040358 119 PDQPKNHFDFIQCLENRTLRGPIRDRKEAWLTCCKDLELSPNFIKDCYESGIGRLLELKYGDETLHLNPPLEYVPWVTVN 198 (236)
Q Consensus 119 ~~~~~~~~~fI~Cm~~~~~~~~~~~~~~~~~~Ca~~~g~d~~~I~~C~~~~~G~~Ll~~~~~~T~~l~p~~~~VPwI~IN 198 (236)
. ...++.+ +.. + .+ .....+...+...|+|.+.+.+|.++..-...+.+..+.+..+ +++.||+++||
T Consensus 107 ~---~~lf~~i---~~~-~-~~--~~~~~L~~~a~~~Gld~~~f~~~l~s~~~~~~v~~~~~~a~~~--gI~gtPtfiIn 174 (207)
T PRK10954 107 T---PPLFEGV---QKT-Q-TI--QSAADIRDVFIKAGVKGEDYDAAWNSFVVKSLVAQQEKAAADL--QLRGVPAMFVN 174 (207)
T ss_pred H---HHHHHHH---Hcc-C-CC--CCHHHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHc--CCCCCCEEEEC
Confidence 0 1122222 222 1 11 2334567788999999999999999987777777766665554 68999999999
Q ss_pred Ceec
Q 040358 199 NKAL 202 (236)
Q Consensus 199 G~~~ 202 (236)
|++.
T Consensus 175 Gky~ 178 (207)
T PRK10954 175 GKYM 178 (207)
T ss_pred CEEE
Confidence 9984
No 7
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=97.96 E-value=0.00018 Score=60.36 Aligned_cols=163 Identities=15% Similarity=0.160 Sum_probs=101.6
Q ss_pred EEEEEEecChhhHHHHHhhhHHHHHhccc--ceeeEEEEeeecceeecCCCc----eec-cCCc----------------
Q 040358 46 LSLYYETLCPGCAEFISEGLGKLFEKGLI--SIVNLRLIPWGNAKIVEPNKT----IDC-QHGE---------------- 102 (236)
Q Consensus 46 V~vyyESlCPd~~~Fi~~qL~P~~~~~l~--d~vdl~lvP~G~a~~~~~~~~----f~C-QHG~---------------- 102 (236)
|++|+...||.|--.. .+|....++ +. +-++|++.||+-.......+. ... +||.
T Consensus 1 I~~~~D~~cP~cyl~~-~~l~~~~~~-~~~~~~~~v~~~p~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~a~ 78 (201)
T cd03024 1 IDIWSDVVCPWCYIGK-RRLEKALAE-LGDEVDVEIEWRPFELNPDMPPEGEDRREYLARKYGSTAEQAAAMRRVEAAAA 78 (201)
T ss_pred CeEEecCcCccHHHHH-HHHHHHHHh-CCCCCceEEEEeeeeeCCCCCCCCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 5799999999999775 577777753 53 258899999964311111110 000 0110
Q ss_pred ---------hhhccChhhhhHhhhC-CCCCCCchhhhhhhhcccCC-CCCcchhHHHHHHHHhcCCChhhHhhcccCchh
Q 040358 103 ---------DECYFNTIEACAILAW-PDQPKNHFDFIQCLENRTLR-GPIRDRKEAWLTCCKDLELSPNFIKDCYESGIG 171 (236)
Q Consensus 103 ---------~EC~gN~~qaCai~~~-~~~~~~~~~fI~Cm~~~~~~-~~~~~~~~~~~~Ca~~~g~d~~~I~~C~~~~~G 171 (236)
..-..|...+|.+-.. ... ..+.+|..-++...+. +.+-.....+...++..|+|.+.+.++.++.+.
T Consensus 79 ~~gi~~~~~~~~~~~s~~a~~~~~~a~~~-~~~~~~~~~lf~a~~~~~~~i~~~~~l~~~a~~~Gld~~~~~~~~~~~~~ 157 (201)
T cd03024 79 AEGLEFDFDRVRPPNTFDAHRLIHLAKEQ-GKQDALVEALFRAYFTEGKDIGDRDVLVDLAEEAGLDAAEARAVLASDEY 157 (201)
T ss_pred HcCCcccCCCCccCCcHHHHHHHHHHhcc-CcHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHcCCCHHHHHHHhcCccc
Confidence 0111355555543322 123 4677887777654211 100023455778999999999999999999988
Q ss_pred HHHHHHHHhhhhhcCCCCceeeEEEECCeec-h--hhHHHHHHHH
Q 040358 172 RLLELKYGDETLHLNPPLEYVPWVTVNNKAL-R--EDYEKFVEYV 213 (236)
Q Consensus 172 ~~Ll~~~~~~T~~l~p~~~~VPwI~ING~~~-~--~~~~nL~~~I 213 (236)
.+.+.+..+++.++ ++..+||++|||++. . ...+.|.+.|
T Consensus 158 ~~~~~~~~~~a~~~--gv~G~Pt~vv~g~~~~~G~~~~~~~~~~i 200 (201)
T cd03024 158 ADEVRADEARARQL--GISGVPFFVFNGKYAVSGAQPPEVFLQAL 200 (201)
T ss_pred chHHHHHHHHHHHC--CCCcCCEEEECCeEeecCCCCHHHHHHHh
Confidence 88888877766654 789999999999863 2 1345555543
No 8
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=97.51 E-value=0.00054 Score=56.75 Aligned_cols=159 Identities=16% Similarity=0.127 Sum_probs=89.8
Q ss_pred EEEEEEEecChhhHHHHHhhhHHHHHhcccceeeEEEEeeeccee-ecCCCc------------------------eecc
Q 040358 45 NLSLYYETLCPGCAEFISEGLGKLFEKGLISIVNLRLIPWGNAKI-VEPNKT------------------------IDCQ 99 (236)
Q Consensus 45 ~V~vyyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lvP~G~a~~-~~~~~~------------------------f~CQ 99 (236)
+|++|+.-.||.|-.+. ..|....+. ..+ ++|++.||.-... ....+. +.-.
T Consensus 1 ~i~~~~D~~Cp~cy~~~-~~l~~l~~~-~~~-~~i~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~gi~~~ 77 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLAS-PRLRKLRAE-YPD-VEIEWRPFPLRPDMRRSGGAPPAEDPAKAEYMFQDLERWARRYGIPFN 77 (193)
T ss_dssp EEEEEEBTTBHHHHHHH-HHHHHHHHH-HTT-CEEEEEEESSSTHHHHCT-SCGCGSHHHHHHHHHHHHHHHHHHT--TB
T ss_pred CEEEEEeCCCHHHHHHH-HHHHHHHHH-hcC-CcEEEeccccccccccCCCCCcccChhHHHHHHHHHHHHHHHhcCccc
Confidence 58999999999999886 466666653 434 8899999873311 111110 0000
Q ss_pred CCchhhccChhhhhHhhh-CCCCCCCchhhhhhhhccc---CCCCCcchhHHHHHHHHhcCCChhhHhhcccCchhHHHH
Q 040358 100 HGEDECYFNTIEACAILA-WPDQPKNHFDFIQCLENRT---LRGPIRDRKEAWLTCCKDLELSPNFIKDCYESGIGRLLE 175 (236)
Q Consensus 100 HG~~EC~gN~~qaCai~~-~~~~~~~~~~fI~Cm~~~~---~~~~~~~~~~~~~~Ca~~~g~d~~~I~~C~~~~~G~~Ll 175 (236)
..+.. .+|...+..+-. .... .+...+..=+...- ..++ +....+...+++.|+|.+.+.+-.+++.+++.+
T Consensus 78 ~~~~~-~~~s~~a~~~~~~a~~~-~~~~~~~~al~~a~~~~~~~i--~~~~vl~~~~~~~Gld~~~~~~~~~~~~~~~~~ 153 (193)
T PF01323_consen 78 FPPPF-PGNSRPAHRAAYAAQEQ-GKADAFADALFRAYFVEGRDI--SDPDVLAEIAEEAGLDPDEFDAALDSPEVKAAL 153 (193)
T ss_dssp TSSTH-HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTSST-T--SSHHHHHHHHHHTT--HHHHHHHHTSHHHHHHH
T ss_pred CCchh-hhhhHHHHHHHHHHHHh-hhhhHHHHHHHHHHHhcccCC--CCHHHHHHHHHHcCCcHHHHHHHhcchHHHHHH
Confidence 00000 012222222211 1111 11223322222211 1122 344557789999999999999999998999999
Q ss_pred HHHHhhhhhcCCCCceeeEEEECCe-ec-h-hhHHHHHHH
Q 040358 176 LKYGDETLHLNPPLEYVPWVTVNNK-AL-R-EDYEKFVEY 212 (236)
Q Consensus 176 ~~~~~~T~~l~p~~~~VPwI~ING~-~~-~-~~~~nL~~~ 212 (236)
.+..++..++ ++..|||++|||+ .+ + +.++.|.+.
T Consensus 154 ~~~~~~a~~~--gv~GvP~~vv~g~~~~~G~~~~~~l~~~ 191 (193)
T PF01323_consen 154 EEDTAEARQL--GVFGVPTFVVNGKYRFFGADRLDELEDA 191 (193)
T ss_dssp HHHHHHHHHT--TCSSSSEEEETTTEEEESCSSHHHHHHH
T ss_pred HHHHHHHHHc--CCcccCEEEECCEEEEECCCCHHHHHHH
Confidence 8877776665 6899999999999 33 2 234555443
No 9
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=97.31 E-value=0.0063 Score=50.35 Aligned_cols=75 Identities=8% Similarity=-0.015 Sum_probs=56.1
Q ss_pred CchhhhhhhhcccC---CCCCcchhHHHHHHHHhcCCChhhHhhcccCchhHHHHHHHHhhhhhcCCCCceeeEEEECCe
Q 040358 124 NHFDFIQCLENRTL---RGPIRDRKEAWLTCCKDLELSPNFIKDCYESGIGRLLELKYGDETLHLNPPLEYVPWVTVNNK 200 (236)
Q Consensus 124 ~~~~fI~Cm~~~~~---~~~~~~~~~~~~~Ca~~~g~d~~~I~~C~~~~~G~~Ll~~~~~~T~~l~p~~~~VPwI~ING~ 200 (236)
...+|..=++...+ ..+ .....+..++++.|+|.+.+.++.++.+..+.+.+..+....+ ++..||+++|||+
T Consensus 101 ~~~~~~~~lf~a~~~~~~~i--~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~l~~~~~~a~~~--gi~gvPtfvv~g~ 176 (192)
T cd03022 101 AAEAFARAVFRALWGEGLDI--ADPAVLAAVAAAAGLDADELLAAADDPAVKAALRANTEEAIAR--GVFGVPTFVVDGE 176 (192)
T ss_pred hHHHHHHHHHHHHhCCCCCC--CCHHHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHHHHHHHHHc--CCCcCCeEEECCe
Confidence 56666666654311 111 2344577899999999999999999998888888876666654 7899999999999
Q ss_pred ec
Q 040358 201 AL 202 (236)
Q Consensus 201 ~~ 202 (236)
..
T Consensus 177 ~~ 178 (192)
T cd03022 177 MF 178 (192)
T ss_pred ee
Confidence 75
No 10
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.0033 Score=54.62 Aligned_cols=156 Identities=19% Similarity=0.211 Sum_probs=87.8
Q ss_pred CCCCCCCCCceEEEEEEEecChhhHHHHHhhhHHHHHhcccce-eeEEEEeeecceeecCCCceeccCCchhhccChhhh
Q 040358 34 NLPPPKHNDNVNLSLYYETLCPGCAEFISEGLGKLFEKGLISI-VNLRLIPWGNAKIVEPNKTIDCQHGEDECYFNTIEA 112 (236)
Q Consensus 34 ~~~~~~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~l~d~-vdl~lvP~G~a~~~~~~~~f~CQHG~~EC~gN~~qa 112 (236)
++..|....+|.|.+|.+-.||+|.+.+ ..|...+.. ..+. +.++.+||-.- ..-.|++ +-..-.
T Consensus 76 ~~~~G~~~~~v~v~~f~d~~Cp~C~~~~-~~l~~~~i~-~~~~~~~~~~~~f~~~------~~~~~~~------a~~~~~ 141 (244)
T COG1651 76 DVVLGNPYAPVTVVEFFDYTCPYCKEAF-PELKKKYID-DGKVRLVLREFPFLDP------ACPYCRR------AAQAAR 141 (244)
T ss_pred cccccCCCCCceEEEEecCcCccHHHHH-HHHHHHhhh-cCCCceEEEEeecCCC------CcHHHHH------HHHHHH
Confidence 5577777789999999999999996554 334443321 2222 33444444322 1111322 222223
Q ss_pred hHhhhCCCCCCCchhhhhhhhcccCCCCCcchhHHHHHHHHhc-CCC--h--hhHhhcccCchhHHHHHHHHhhhhhcCC
Q 040358 113 CAILAWPDQPKNHFDFIQCLENRTLRGPIRDRKEAWLTCCKDL-ELS--P--NFIKDCYESGIGRLLELKYGDETLHLNP 187 (236)
Q Consensus 113 Cai~~~~~~~~~~~~fI~Cm~~~~~~~~~~~~~~~~~~Ca~~~-g~d--~--~~I~~C~~~~~G~~Ll~~~~~~T~~l~p 187 (236)
|+.+.- . .++|.|..=+++... .....+..|++.. +.. + .....|.+......+..+..+....+
T Consensus 142 ~~~~~~--~-~~y~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~-- 211 (244)
T COG1651 142 CAADQG--I-VRYWAFHDALFGSQA-----EAWAASILCAKDLAKADLAALDEGKKAKLNQKACDALIAKNYKLAQQL-- 211 (244)
T ss_pred Hhcccc--c-hhHHHHHHHHhhccc-----cchhhhhhhhhhhhhhhHHHHHhhhhhccChHHHHHHHHHHHHHHHhc--
Confidence 333211 1 259999998887631 2333445665542 221 1 45667765445566666655555444
Q ss_pred CCceeeEEEECCeechh--hHHHHHHHH
Q 040358 188 PLEYVPWVTVNNKALRE--DYEKFVEYV 213 (236)
Q Consensus 188 ~~~~VPwI~ING~~~~~--~~~nL~~~I 213 (236)
+++.+|+++|||..+.. ..+.|.+.|
T Consensus 212 gv~gTPt~~v~~~~~~g~~~~~~l~~~i 239 (244)
T COG1651 212 GVNGTPTFIVNGKLVPGLPDLDELKAII 239 (244)
T ss_pred CCCcCCeEEECCeeecCCCCHHHHHHHH
Confidence 68999999999985432 245555554
No 11
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=97.18 E-value=0.0033 Score=52.19 Aligned_cols=152 Identities=14% Similarity=0.116 Sum_probs=92.2
Q ss_pred eEEEEEEEecChhhHHHHHhhhHHHHHhcccceeeEEEEeeecceeecC--C-C----------------ceeccCCchh
Q 040358 44 VNLSLYYETLCPGCAEFISEGLGKLFEKGLISIVNLRLIPWGNAKIVEP--N-K----------------TIDCQHGEDE 104 (236)
Q Consensus 44 V~V~vyyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lvP~G~a~~~~~--~-~----------------~f~CQHG~~E 104 (236)
++|.+|+...||+|-... .+|..+.+ .+...+++++.+++-...... . . +..-..++.+
T Consensus 1 ~~i~~~~D~~cp~c~~~~-~~l~~l~~-~~~~~~~v~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 78 (193)
T cd03025 1 LELYYFIDPLCGWCYGFE-PLLEKLKE-EYGGGIEVELHLGGLLPGNNARQITKQWRIYVHWHKARIALTGQPFGEDYLE 78 (193)
T ss_pred CeEEEEECCCCchhhCch-HHHHHHHH-HhCCCceEEEEeccccCCCCCCCcchHHHHHHhHHHHHHHhcCCccCchhHh
Confidence 478999999999999774 45665554 354457788777764311110 0 0 0000011110
Q ss_pred ---hccChhhhhHhhhC-C-CCCCCchhhhhhhhccc---CCCCCcchhHHHHHHHHhcCCChhhHhhcccCchhHHHHH
Q 040358 105 ---CYFNTIEACAILAW-P-DQPKNHFDFIQCLENRT---LRGPIRDRKEAWLTCCKDLELSPNFIKDCYESGIGRLLEL 176 (236)
Q Consensus 105 ---C~gN~~qaCai~~~-~-~~~~~~~~fI~Cm~~~~---~~~~~~~~~~~~~~Ca~~~g~d~~~I~~C~~~~~G~~Ll~ 176 (236)
--.|...++..-.. . ..+....+|..-++... ..++ +....+...+.+.|+|.+.+.++.++.+.++.+.
T Consensus 79 ~~~~~~~s~~a~~~~~aa~~~~~~~~~~~~~~l~~a~~~~~~~i--~~~~~l~~ia~~~Gld~~~~~~~~~s~~~~~~l~ 156 (193)
T cd03025 79 LLLFDLDSAPASRAIKAARLQGPERLLEMLKAIQRAHYVEGRDL--ADTEVLRELAIELGLDVEEFLEDFQSDEAKQAIQ 156 (193)
T ss_pred cccCCCCchHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcCCCC--CCHHHHHHHHHHcCCCHHHHHHHHcChHHHHHHH
Confidence 00123333322111 1 11246778877775531 1122 2344677899999999999999999999998988
Q ss_pred HHHhhhhhcCCCCceeeEEEECCee
Q 040358 177 KYGDETLHLNPPLEYVPWVTVNNKA 201 (236)
Q Consensus 177 ~~~~~T~~l~p~~~~VPwI~ING~~ 201 (236)
+..+...++ ++..+||++|++..
T Consensus 157 ~~~~~a~~~--gv~g~Ptfvv~~~~ 179 (193)
T cd03025 157 EDQKLAREL--GINGFPTLVLEDDN 179 (193)
T ss_pred HHHHHHHHc--CCCccCEEEEEeCC
Confidence 877776665 67999999997653
No 12
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=96.99 E-value=0.0053 Score=51.51 Aligned_cols=145 Identities=18% Similarity=0.211 Sum_probs=83.0
Q ss_pred EEEEecChhhHHHHHhhhHHHHHhcccceeeEEEEeeecceeecCCC-ceeccCCchhh--ccChhhhhH---hhhCCCC
Q 040358 48 LYYETLCPGCAEFISEGLGKLFEKGLISIVNLRLIPWGNAKIVEPNK-TIDCQHGEDEC--YFNTIEACA---ILAWPDQ 121 (236)
Q Consensus 48 vyyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lvP~G~a~~~~~~~-~f~CQHG~~EC--~gN~~qaCa---i~~~~~~ 121 (236)
+|+--+|+.|-.+- ..|..+.. ++...+++++||.|+.......- ...+.+...++ ......+|. ...+...
T Consensus 2 ~F~dPlc~~C~~~E-~~l~kl~~-~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~a~la~kAA~~qg~ 79 (176)
T PF13743_consen 2 LFVDPLCSWCWGFE-PELRKLKE-EYGNKIEFRFIPGGLMPDINDFMPRMPINGDFWRNEPRSSSYPACLAYKAAQLQGK 79 (176)
T ss_dssp EEE-TT-HHHHHHH-HHHHHHHH-HS-TTEEEEEEE--SS-S--SB--H----TTHHHS--BS--HHHHHHHHHHHTTT-
T ss_pred eeeCCCChHHHHhH-HHHHHHHH-HcCCcEEEEEEEccchHHHHHHHHhcCCCHHHhcCCCCCCchHHHHHHHHHHHhCh
Confidence 46667899999873 34444444 68899999999999985433111 11122221111 234455552 1112233
Q ss_pred CCCchhhhhhhhcccC---CCCCcchhHHHHHHHHhcCCChhhHhhcccCchhHHHHHHHHhhhhhcCCCCceeeEEEEC
Q 040358 122 PKNHFDFIQCLENRTL---RGPIRDRKEAWLTCCKDLELSPNFIKDCYESGIGRLLELKYGDETLHLNPPLEYVPWVTVN 198 (236)
Q Consensus 122 ~~~~~~fI~Cm~~~~~---~~~~~~~~~~~~~Ca~~~g~d~~~I~~C~~~~~G~~Ll~~~~~~T~~l~p~~~~VPwI~IN 198 (236)
++...|+.-|+...+ .++ ...+....+|++.|+|.+.+.+=.+|+...+.+.+--+.+..+ +++..|+++|.
T Consensus 80 -k~~~~fL~~lQ~a~~~~~~~~--s~~~~l~~iA~~~gLD~~~F~~d~~S~~~~~~~~~D~~la~~m--~I~~~Ptlvi~ 154 (176)
T PF13743_consen 80 -KKARRFLRALQEALFLEGKNY--SDEELLLEIAEELGLDVEMFKEDLHSDEAKQAFQEDQQLAREM--GITGFPTLVIF 154 (176)
T ss_dssp -H--HHHHHHHHHHHHTS---T--TSHHHHHHHHHHTT--HHHHHHHHTSHHHHHHHHHHHHHHHHT--T-SSSSEEEEE
T ss_pred -hhHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHhCCCHHHHHHHHhChHHHHHHHHHHHHHHHc--CCCCCCEEEEE
Confidence 677888888876421 111 3346678999999999998888888998999988877777776 57999999986
Q ss_pred C
Q 040358 199 N 199 (236)
Q Consensus 199 G 199 (236)
+
T Consensus 155 ~ 155 (176)
T PF13743_consen 155 N 155 (176)
T ss_dssp -
T ss_pred e
Confidence 5
No 13
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.25 E-value=0.035 Score=48.75 Aligned_cols=173 Identities=13% Similarity=0.169 Sum_probs=108.5
Q ss_pred CCCceEEEEEEEecChhhHHHHHhhhHHHHHhcccce--eeEEEEeeecceeecCCC-----ceeccCC-----------
Q 040358 40 HNDNVNLSLYYETLCPGCAEFISEGLGKLFEKGLISI--VNLRLIPWGNAKIVEPNK-----TIDCQHG----------- 101 (236)
Q Consensus 40 ~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~l~d~--vdl~lvP~G~a~~~~~~~-----~f~CQHG----------- 101 (236)
...+++|++|..-.||.|--. ...|-..+. .+.+. +++...||--.-.....| .+.=.-|
T Consensus 2 ~~~~i~I~v~sD~vCPwC~ig-~~rL~ka~~-~~~~~~~v~i~w~pf~l~p~~~~~g~~~~~~l~~k~g~~~~~~~~~~~ 79 (225)
T COG2761 2 NPMKIEIDVFSDVVCPWCYIG-KRRLEKALA-EYPQEVRVEIRWRPFELDPDLPPEGLDRKEYLAQKYGISEEQKAAHAR 79 (225)
T ss_pred CCceEEEEEEeCCcCchhhcC-HHHHHHHHH-hcCcceeEEEEecccccCCCCCcccccHHHHHHHHhCccHHHHHHHHH
Confidence 457899999999999999755 344555555 35544 556666765331111100 0000000
Q ss_pred ----chh-----------hccChhhhhHhhhCCCCCC-CchhhhhhhhcccCC---CCCcchhHHHHHHHHhcCCChhhH
Q 040358 102 ----EDE-----------CYFNTIEACAILAWPDQPK-NHFDFIQCLENRTLR---GPIRDRKEAWLTCCKDLELSPNFI 162 (236)
Q Consensus 102 ----~~E-----------C~gN~~qaCai~~~~~~~~-~~~~fI~Cm~~~~~~---~~~~~~~~~~~~Ca~~~g~d~~~I 162 (236)
-.| =..|.+.||-+-++-.... .+..|+.=+++.-+. ++ +....+..||.++|+|.+.+
T Consensus 80 ~~~~~~~~Gi~~~f~~~~~~~nt~~Ah~l~~~A~~~G~~~~~~~~~lf~AyF~eg~nI--~D~dVL~diA~~~GLD~~~~ 157 (225)
T COG2761 80 LEELAEEEGIDFNFDAIVPAPNTLDAHRLIKAAELQGKAQDRFLEALFEAYFEEGRNI--GDEDVLADIAEEVGLDREEF 157 (225)
T ss_pred HHHhhHhcCcccchhhccCCCchHHHHHHHHHHHHhCchHHHHHHHHHHHHhccCCCC--CcHHHHHHHHHHhCCCHHHH
Confidence 011 3456677777665532213 488888887654222 22 56677889999999999999
Q ss_pred hhcccCchhHHHHHHHHhhhhhcCCCCceeeEEEECCeec-h--hhHHHHHHHHHHhcc
Q 040358 163 KDCYESGIGRLLELKYGDETLHLNPPLEYVPWVTVNNKAL-R--EDYEKFVEYVCGAYK 218 (236)
Q Consensus 163 ~~C~~~~~G~~Ll~~~~~~T~~l~p~~~~VPwI~ING~~~-~--~~~~nL~~~IC~~y~ 218 (236)
++=..++...+=++.-.+++.. -+++.||+++++|++. . +..+-|.++|=+...
T Consensus 158 ~~~L~s~~~~~avr~d~~~A~e--~gI~gVP~fv~d~~~~V~Gaq~~~v~~~al~~~~~ 214 (225)
T COG2761 158 KADLASDAAKDAVRQDEAAAQE--MGIRGVPTFVFDGKYAVSGAQPYDVLEDALRQLLA 214 (225)
T ss_pred HHHHhChHHHHHHHHHHHHHHH--CCCccCceEEEcCcEeecCCCCHHHHHHHHHHHHh
Confidence 9888888887777775555444 4899999999977763 2 234556666655544
No 14
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=93.43 E-value=0.84 Score=39.96 Aligned_cols=45 Identities=11% Similarity=0.313 Sum_probs=31.4
Q ss_pred CCCCCceEEEEEEEecChhhHHHHHhhhHHHHHhcccceeeEEEEeeecc
Q 040358 38 PKHNDNVNLSLYYETLCPGCAEFISEGLGKLFEKGLISIVNLRLIPWGNA 87 (236)
Q Consensus 38 ~~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lvP~G~a 87 (236)
+..+.++.|.+|.--.||+|+++. .+|....+ . -+.+++++|...
T Consensus 103 g~~~~k~~I~vFtDp~CpyCkkl~-~~l~~~~~--~--~v~v~~~~~P~~ 147 (232)
T PRK10877 103 KAPQEKHVITVFTDITCGYCHKLH-EQMKDYNA--L--GITVRYLAFPRQ 147 (232)
T ss_pred cCCCCCEEEEEEECCCChHHHHHH-HHHHHHhc--C--CeEEEEEeccCC
Confidence 445678899999999999999997 34443322 1 266777766643
No 15
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=92.62 E-value=0.078 Score=40.52 Aligned_cols=27 Identities=19% Similarity=0.349 Sum_probs=20.2
Q ss_pred CCccchhHHHHHHHHHHHhhcCCCcccc
Q 040358 1 MTSHQLYFFIVFTSLMFMFISSPCSCVE 28 (236)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 28 (236)
|. ||-++||.|+|.++|+|+|+.+++.
T Consensus 1 Ma-SK~~llL~l~LA~lLlisSevaa~~ 27 (95)
T PF07172_consen 1 MA-SKAFLLLGLLLAALLLISSEVAARE 27 (95)
T ss_pred Cc-hhHHHHHHHHHHHHHHHHhhhhhHH
Confidence 77 6777777777778888887766654
No 16
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=91.74 E-value=0.39 Score=42.55 Aligned_cols=49 Identities=20% Similarity=0.293 Sum_probs=38.4
Q ss_pred CCCCCCCCCceEEEEEEEecChhhHHHHHhhhHHHHHhcccceeeEEEEeeec
Q 040358 34 NLPPPKHNDNVNLSLYYETLCPGCAEFISEGLGKLFEKGLISIVNLRLIPWGN 86 (236)
Q Consensus 34 ~~~~~~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lvP~G~ 86 (236)
-+..|..+.+..|.+|.--.||+|++|. .++.|..+. ..+.++++|++-
T Consensus 109 ~i~~g~~~ak~~I~vFtDp~CpyC~kl~-~~l~~~~~~---g~V~v~~ip~~~ 157 (251)
T PRK11657 109 WILDGKADAPRIVYVFADPNCPYCKQFW-QQARPWVDS---GKVQLRHILVGI 157 (251)
T ss_pred CccccCCCCCeEEEEEECCCChhHHHHH-HHHHHHhhc---CceEEEEEeccc
Confidence 3456667889999999999999999998 567776642 347888998864
No 17
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=87.79 E-value=1 Score=37.87 Aligned_cols=46 Identities=20% Similarity=0.252 Sum_probs=35.2
Q ss_pred CCCCCCCceEEEEEEEecChhhHHHHHhhhHHHHHhcccceeeEEEEeeecc
Q 040358 36 PPPKHNDNVNLSLYYETLCPGCAEFISEGLGKLFEKGLISIVNLRLIPWGNA 87 (236)
Q Consensus 36 ~~~~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lvP~G~a 87 (236)
..|..+.++.|.+|..-.||+|+++. ..|.+ ..+-+.++++||+..
T Consensus 71 ~~g~~~~~~~i~~f~D~~Cp~C~~~~-~~l~~-----~~~~v~v~~~~~p~~ 116 (197)
T cd03020 71 VYGKGNGKRVVYVFTDPDCPYCRKLE-KELKP-----NADGVTVRIFPVPIL 116 (197)
T ss_pred EEcCCCCCEEEEEEECCCCccHHHHH-HHHhh-----ccCceEEEEEEcCcC
Confidence 44556789999999999999999997 45655 234578888888644
No 18
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=87.50 E-value=0.85 Score=32.30 Aligned_cols=40 Identities=25% Similarity=0.379 Sum_probs=32.1
Q ss_pred EEEEEEecChhhHHHHHhhhHHHHHhcccceeeEEEEeeecc
Q 040358 46 LSLYYETLCPGCAEFISEGLGKLFEKGLISIVNLRLIPWGNA 87 (236)
Q Consensus 46 V~vyyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lvP~G~a 87 (236)
|.+|+.-.||+|..+. .+|.+... ...+.++++++|+.-.
T Consensus 1 i~~f~d~~Cp~C~~~~-~~l~~~~~-~~~~~~~~~~~~~~~~ 40 (98)
T cd02972 1 IVEFFDPLCPYCYLFE-PELEKLLY-ADDGGVRVVYRPFPLL 40 (98)
T ss_pred CeEEECCCCHhHHhhh-HHHHHHHh-hcCCcEEEEEeccccC
Confidence 5689999999999996 67777764 3567899999998855
No 19
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=86.44 E-value=1.2 Score=37.93 Aligned_cols=51 Identities=18% Similarity=0.117 Sum_probs=36.8
Q ss_pred HHHHHHHhcCCChhhHh---hcccCchhHHHHHHHHhhhhhcCCCCceeeEEEECC
Q 040358 147 AWLTCCKDLELSPNFIK---DCYESGIGRLLELKYGDETLHLNPPLEYVPWVTVNN 199 (236)
Q Consensus 147 ~~~~Ca~~~g~d~~~I~---~C~~~~~G~~Ll~~~~~~T~~l~p~~~~VPwI~ING 199 (236)
.+..++.+.|+|++..+ +-+.++++.+.+.+..++..+ -++..||+++||+
T Consensus 134 vL~~~a~~~Gld~~~~~~~l~~~~~~~~~~~l~~~~~~A~~--~Gv~GVP~fvv~~ 187 (209)
T cd03021 134 SISVAADKLGGSAEQAEKLLKAASTPEVKNRLKENTDEALK--YGAFGLPWIVVTN 187 (209)
T ss_pred HHHHHHHHcCCCcccHHHHHHHccCHHHHHHHHHHHHHHHH--cCCCCCCEEEEEc
Confidence 34689999999865444 444677777777776555544 4899999999964
No 20
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=81.87 E-value=2.9 Score=33.35 Aligned_cols=44 Identities=25% Similarity=0.347 Sum_probs=26.0
Q ss_pred CCCCceEEEEEEEecChhhHHHHHhhhHHHHHhcccceeeEEEEeee
Q 040358 39 KHNDNVNLSLYYETLCPGCAEFISEGLGKLFEKGLISIVNLRLIPWG 85 (236)
Q Consensus 39 ~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lvP~G 85 (236)
....++++.|+.|+-||||++++ =.|....+ ....++++++.-.
T Consensus 38 ~~~~~~~ilvi~e~WCgD~~~~v-P~l~kiae--~~p~i~~~~i~rd 81 (129)
T PF14595_consen 38 SIQKPYNILVITETWCGDCARNV-PVLAKIAE--ANPNIEVRIILRD 81 (129)
T ss_dssp T--S-EEEEEE--TT-HHHHHHH-HHHHHHHH--H-TTEEEEEE-HH
T ss_pred hcCCCcEEEEEECCCchhHHHHH-HHHHHHHH--hCCCCeEEEEEec
Confidence 34578899999999999999886 23444443 3456788887654
No 21
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=80.95 E-value=3.1 Score=28.23 Aligned_cols=18 Identities=28% Similarity=0.840 Sum_probs=16.1
Q ss_pred eEEEEEEEecChhhHHHH
Q 040358 44 VNLSLYYETLCPGCAEFI 61 (236)
Q Consensus 44 V~V~vyyESlCPd~~~Fi 61 (236)
|+|.+|+.+-||.|.+..
T Consensus 1 ~~v~~f~~~~C~~C~~~~ 18 (67)
T cd02973 1 VNIEVFVSPTCPYCPDAV 18 (67)
T ss_pred CEEEEEECCCCCCcHHHH
Confidence 789999999999998763
No 22
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=79.21 E-value=3.2 Score=32.16 Aligned_cols=31 Identities=19% Similarity=0.122 Sum_probs=24.8
Q ss_pred CchhHHHHHHHHhhhhhcCCCCceeeEEEECCeech
Q 040358 168 SGIGRLLELKYGDETLHLNPPLEYVPWVTVNNKALR 203 (236)
Q Consensus 168 ~~~G~~Ll~~~~~~T~~l~p~~~~VPwI~ING~~~~ 203 (236)
.++|.+++....+.|.+ +.||.|+|||++++
T Consensus 49 ~~~g~eiq~~l~~~tg~-----~tvP~vFI~Gk~iG 79 (104)
T KOG1752|consen 49 DEDGSEIQKALKKLTGQ-----RTVPNVFIGGKFIG 79 (104)
T ss_pred CCCcHHHHHHHHHhcCC-----CCCCEEEECCEEEc
Confidence 46788888887766643 58999999999985
No 23
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=78.82 E-value=4 Score=28.50 Aligned_cols=25 Identities=20% Similarity=0.464 Sum_probs=19.5
Q ss_pred eEEEEEEEecChhhHHHHHhhhHHHH
Q 040358 44 VNLSLYYETLCPGCAEFISEGLGKLF 69 (236)
Q Consensus 44 V~V~vyyESlCPd~~~Fi~~qL~P~~ 69 (236)
|+|.+|+-+-||.|+... ..|....
T Consensus 1 ~~v~~f~~~~C~~C~~~~-~~l~~l~ 25 (82)
T TIGR00411 1 VKIELFTSPTCPYCPAAK-RVVEEVA 25 (82)
T ss_pred CEEEEEECCCCcchHHHH-HHHHHHH
Confidence 789999999999999774 3444444
No 24
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=77.76 E-value=4.2 Score=30.72 Aligned_cols=50 Identities=18% Similarity=0.076 Sum_probs=33.9
Q ss_pred HHHHHHhcCCChhhHhhcccCchhHHHHHHHHhhhhhcCCCCceeeEEEECCeech
Q 040358 148 WLTCCKDLELSPNFIKDCYESGIGRLLELKYGDETLHLNPPLEYVPWVTVNNKALR 203 (236)
Q Consensus 148 ~~~Ca~~~g~d~~~I~~C~~~~~G~~Ll~~~~~~T~~l~p~~~~VPwI~ING~~~~ 203 (236)
..+-.++.|++.+.+ .--..+.+.++..+..+.| +...||.|+|||++++
T Consensus 24 ak~~L~~~~i~~~~v-did~~~~~~~~~~~l~~~t-----g~~tvP~Vfi~g~~iG 73 (99)
T TIGR02189 24 VKRLLLTLGVNPAVH-EIDKEPAGKDIENALSRLG-----CSPAVPAVFVGGKLVG 73 (99)
T ss_pred HHHHHHHcCCCCEEE-EcCCCccHHHHHHHHHHhc-----CCCCcCeEEECCEEEc
Confidence 345556677766421 2224667777777776665 4578999999999975
No 25
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=73.37 E-value=7.8 Score=26.96 Aligned_cols=49 Identities=16% Similarity=0.003 Sum_probs=29.2
Q ss_pred HHHHHHHHhcCCChhhHhhcccCchhHHHHHHHHhhhhhcCCCCceeeEEEECCeech
Q 040358 146 EAWLTCCKDLELSPNFIKDCYESGIGRLLELKYGDETLHLNPPLEYVPWVTVNNKALR 203 (236)
Q Consensus 146 ~~~~~Ca~~~g~d~~~I~~C~~~~~G~~Ll~~~~~~T~~l~p~~~~VPwI~ING~~~~ 203 (236)
..+.+.+++.|++++.+ ...+..+ ...+..+.+ +...+|.|+|||++++
T Consensus 15 ~ka~~~L~~~gi~~~~~-di~~~~~---~~~el~~~~-----g~~~vP~v~i~~~~iG 63 (73)
T cd03027 15 TAVRLFLREKGLPYVEI-NIDIFPE---RKAELEERT-----GSSVVPQIFFNEKLVG 63 (73)
T ss_pred HHHHHHHHHCCCceEEE-ECCCCHH---HHHHHHHHh-----CCCCcCEEEECCEEEe
Confidence 34567778889888754 2232222 222222222 2367899999999986
No 26
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=73.21 E-value=7 Score=28.93 Aligned_cols=41 Identities=20% Similarity=0.338 Sum_probs=27.9
Q ss_pred CCCceEEEEEEEecChhhHHHHHhhhHHHHHhcccceeeEEEEe
Q 040358 40 HNDNVNLSLYYETLCPGCAEFISEGLGKLFEKGLISIVNLRLIP 83 (236)
Q Consensus 40 ~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lvP 83 (236)
-..+|+|.+|+..-||+|... .+++.-+.. ..+.+++..+=
T Consensus 10 l~~pv~i~~F~~~~C~~C~~~--~~~~~~l~~-~~~~i~~~~vd 50 (89)
T cd03026 10 LNGPINFETYVSLSCHNCPDV--VQALNLMAV-LNPNIEHEMID 50 (89)
T ss_pred cCCCEEEEEEECCCCCCcHHH--HHHHHHHHH-HCCCceEEEEE
Confidence 457999999999999999965 355555543 33345554443
No 27
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=72.39 E-value=12 Score=26.93 Aligned_cols=41 Identities=20% Similarity=0.466 Sum_probs=29.4
Q ss_pred CceEEEEEEEecChhhHHHHHhhhHHHHHhccc--ceeeEEEEee
Q 040358 42 DNVNLSLYYETLCPGCAEFISEGLGKLFEKGLI--SIVNLRLIPW 84 (236)
Q Consensus 42 ~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~l~--d~vdl~lvP~ 84 (236)
.|+.+-.|+.+-||.|++++ ..|...+++ +. +-++|=.|..
T Consensus 1 gK~~ll~fwa~~c~~c~~~~-~~l~~l~~~-~~~~~~v~~v~Vs~ 43 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKEL-PKLKELYKK-YKKKDDVEFVFVSL 43 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHH-HHHHHHHHH-HTTTTTEEEEEEE-
T ss_pred CCEEEEEEECCCCHHHHHHH-HHHHHHHHH-hCCCCCEEEEEEEe
Confidence 37889999999999999997 678887764 66 4455555444
No 28
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=66.54 E-value=4.1 Score=33.96 Aligned_cols=61 Identities=16% Similarity=0.268 Sum_probs=36.5
Q ss_pred CceEEEEEEEecChhhHHHHHhhhHHHHHhcccce-eeEEEEeeecceee-cCCCceeccCCchh
Q 040358 42 DNVNLSLYYETLCPGCAEFISEGLGKLFEKGLISI-VNLRLIPWGNAKIV-EPNKTIDCQHGEDE 104 (236)
Q Consensus 42 ~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~l~d~-vdl~lvP~G~a~~~-~~~~~f~CQHG~~E 104 (236)
.||-+-.|.-.-||.|+.| +-.|.++|+. +.+- -.|++|....-+.. +-+..+.++||+-=
T Consensus 33 gKvV~lyFsA~wC~pCR~F-TP~Lk~fYe~-l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~ 95 (157)
T KOG2501|consen 33 GKVVGLYFSAHWCPPCRDF-TPILKDFYEE-LKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWL 95 (157)
T ss_pred CcEEEEEEEEEECCchhhC-CchHHHHHHH-HHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeE
Confidence 4776666677889999999 4778888874 5443 13555543322110 01123677787643
No 29
>PHA03050 glutaredoxin; Provisional
Probab=65.36 E-value=11 Score=29.08 Aligned_cols=28 Identities=14% Similarity=0.087 Sum_probs=19.2
Q ss_pred hHHHHHHHHhhhhhcCCCCceeeEEEECCeech
Q 040358 171 GRLLELKYGDETLHLNPPLEYVPWVTVNNKALR 203 (236)
Q Consensus 171 G~~Ll~~~~~~T~~l~p~~~~VPwI~ING~~~~ 203 (236)
+.++..+..+.| +.+.||.|+|||++++
T Consensus 54 ~~~~~~~l~~~t-----G~~tVP~IfI~g~~iG 81 (108)
T PHA03050 54 ENELRDYFEQIT-----GGRTVPRIFFGKTSIG 81 (108)
T ss_pred CHHHHHHHHHHc-----CCCCcCEEEECCEEEe
Confidence 344455544444 3478999999999975
No 30
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=63.59 E-value=6.2 Score=28.13 Aligned_cols=23 Identities=17% Similarity=0.391 Sum_probs=18.0
Q ss_pred CCCCceEEEEEEEecChhhHHHH
Q 040358 39 KHNDNVNLSLYYETLCPGCAEFI 61 (236)
Q Consensus 39 ~~~~kV~V~vyyESlCPd~~~Fi 61 (236)
++.++-+|+||..+-||+|.+-.
T Consensus 3 ~~~~~~~V~ly~~~~Cp~C~~ak 25 (79)
T TIGR02190 3 QARKPESVVVFTKPGCPFCAKAK 25 (79)
T ss_pred CcCCCCCEEEEECCCCHhHHHHH
Confidence 44555678899999999999763
No 31
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=63.04 E-value=9.5 Score=27.39 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=16.2
Q ss_pred CceeeEEEECCeechhhHHHHHHH
Q 040358 189 LEYVPWVTVNNKALREDYEKFVEY 212 (236)
Q Consensus 189 ~~~VPwI~ING~~~~~~~~nL~~~ 212 (236)
...||.|+|||+++.. .++|.+.
T Consensus 56 ~~~vP~ifi~g~~igg-~~~~~~~ 78 (85)
T PRK11200 56 VETVPQIFVDQKHIGG-CTDFEAY 78 (85)
T ss_pred CCcCCEEEECCEEEcC-HHHHHHH
Confidence 4789999999999752 2444443
No 32
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=58.77 E-value=6.8 Score=26.86 Aligned_cols=16 Identities=31% Similarity=0.742 Sum_probs=14.1
Q ss_pred EEEEEEEecChhhHHH
Q 040358 45 NLSLYYETLCPGCAEF 60 (236)
Q Consensus 45 ~V~vyyESlCPd~~~F 60 (236)
+|.+|+.+.||+|++.
T Consensus 1 ~v~ly~~~~C~~C~~~ 16 (77)
T TIGR02200 1 TITVYGTTWCGYCAQL 16 (77)
T ss_pred CEEEEECCCChhHHHH
Confidence 4789999999999975
No 33
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=57.88 E-value=10 Score=26.86 Aligned_cols=14 Identities=29% Similarity=0.385 Sum_probs=11.5
Q ss_pred CCceeeEEEECCee
Q 040358 188 PLEYVPWVTVNNKA 201 (236)
Q Consensus 188 ~~~~VPwI~ING~~ 201 (236)
++..+|+++|||+.
T Consensus 46 gv~~vPalvIng~~ 59 (76)
T PF13192_consen 46 GVMSVPALVINGKV 59 (76)
T ss_dssp T-SSSSEEEETTEE
T ss_pred CCCCCCEEEECCEE
Confidence 57899999999995
No 34
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=57.86 E-value=27 Score=25.52 Aligned_cols=49 Identities=8% Similarity=0.004 Sum_probs=30.4
Q ss_pred HHHHHHHHhcCCChhhHhhcccCchhHHHHHHHHhhhhhcCCCCceeeEEEECCeech
Q 040358 146 EAWLTCCKDLELSPNFIKDCYESGIGRLLELKYGDETLHLNPPLEYVPWVTVNNKALR 203 (236)
Q Consensus 146 ~~~~~Ca~~~g~d~~~I~~C~~~~~G~~Ll~~~~~~T~~l~p~~~~VPwI~ING~~~~ 203 (236)
....+..+..|++.+.++- .. ..++..+..+.| +...||.|+|||++++
T Consensus 27 ~~ak~~L~~~~i~y~~idv--~~--~~~~~~~l~~~~-----g~~tvP~vfi~g~~iG 75 (90)
T cd03028 27 RKVVQILNQLGVDFGTFDI--LE--DEEVRQGLKEYS-----NWPTFPQLYVNGELVG 75 (90)
T ss_pred HHHHHHHHHcCCCeEEEEc--CC--CHHHHHHHHHHh-----CCCCCCEEEECCEEEe
Confidence 3455667778887765542 11 133444443443 3467999999999985
No 35
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=57.60 E-value=28 Score=25.65 Aligned_cols=28 Identities=18% Similarity=0.333 Sum_probs=20.2
Q ss_pred CCCceEEEEEEEecChhhHHHHHhhhHHH
Q 040358 40 HNDNVNLSLYYETLCPGCAEFISEGLGKL 68 (236)
Q Consensus 40 ~~~kV~V~vyyESlCPd~~~Fi~~qL~P~ 68 (236)
...+-.|-+|+..-||+|+++. .++.+.
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~-~~~~~~ 30 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLE-KELFPD 30 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHH-HHHHHH
T ss_pred CCCCEEEEEEECCCCHHHHHHH-HHHHHH
Confidence 3567788899999999999986 566653
No 36
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=56.63 E-value=7.3 Score=25.81 Aligned_cols=17 Identities=18% Similarity=0.592 Sum_probs=12.6
Q ss_pred EEEEEEEecChhhHHHH
Q 040358 45 NLSLYYETLCPGCAEFI 61 (236)
Q Consensus 45 ~V~vyyESlCPd~~~Fi 61 (236)
+|.+|+...||+|++..
T Consensus 1 ~v~ly~~~~Cp~C~~~~ 17 (72)
T cd02066 1 KVVVFSKSTCPYCKRAK 17 (72)
T ss_pred CEEEEECCCCHHHHHHH
Confidence 36788888888888653
No 37
>PRK10824 glutaredoxin-4; Provisional
Probab=56.56 E-value=40 Score=26.44 Aligned_cols=65 Identities=6% Similarity=0.061 Sum_probs=36.8
Q ss_pred HHHHHHHHhcCCChhhHhhcccCchhHHHHHHHHhhhhhcCCCCceeeEEEECCeechh-----------hHHHHHHHHH
Q 040358 146 EAWLTCCKDLELSPNFIKDCYESGIGRLLELKYGDETLHLNPPLEYVPWVTVNNKALRE-----------DYEKFVEYVC 214 (236)
Q Consensus 146 ~~~~~Ca~~~g~d~~~I~~C~~~~~G~~Ll~~~~~~T~~l~p~~~~VPwI~ING~~~~~-----------~~~nL~~~IC 214 (236)
..+.+-.+..|+++..+.-=. ..++.....+.| +...||-|+|||++++- .+..+++.+=
T Consensus 34 ~~ak~lL~~~~i~~~~idi~~----d~~~~~~l~~~s-----g~~TVPQIFI~G~~IGG~ddl~~l~~~G~L~~lL~~~~ 104 (115)
T PRK10824 34 AQAVQALSACGERFAYVDILQ----NPDIRAELPKYA-----NWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKETA 104 (115)
T ss_pred HHHHHHHHHcCCCceEEEecC----CHHHHHHHHHHh-----CCCCCCeEEECCEEEcChHHHHHHHHCCCHHHHHHHHH
Confidence 344555666777765442211 123444444444 34799999999999852 1445555555
Q ss_pred HhccC
Q 040358 215 GAYKG 219 (236)
Q Consensus 215 ~~y~~ 219 (236)
..|.+
T Consensus 105 ~~~~~ 109 (115)
T PRK10824 105 AKYKS 109 (115)
T ss_pred hhhcc
Confidence 55555
No 38
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=53.70 E-value=11 Score=25.14 Aligned_cols=16 Identities=25% Similarity=0.592 Sum_probs=10.8
Q ss_pred EEEEEEecChhhHHHH
Q 040358 46 LSLYYETLCPGCAEFI 61 (236)
Q Consensus 46 V~vyyESlCPd~~~Fi 61 (236)
|.+|....||+|++..
T Consensus 1 V~vy~~~~C~~C~~~~ 16 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAK 16 (60)
T ss_dssp EEEEESTTSHHHHHHH
T ss_pred cEEEEcCCCcCHHHHH
Confidence 5677777777777653
No 39
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=52.95 E-value=10 Score=26.48 Aligned_cols=17 Identities=18% Similarity=0.585 Sum_probs=13.7
Q ss_pred EEEEEEEecChhhHHHH
Q 040358 45 NLSLYYETLCPGCAEFI 61 (236)
Q Consensus 45 ~V~vyyESlCPd~~~Fi 61 (236)
+|.+|+...||+|.+..
T Consensus 1 ~v~~y~~~~Cp~C~~~~ 17 (82)
T cd03419 1 PVVVFSKSYCPYCKRAK 17 (82)
T ss_pred CEEEEEcCCCHHHHHHH
Confidence 37889999999998663
No 40
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=51.14 E-value=45 Score=24.22 Aligned_cols=34 Identities=24% Similarity=0.414 Sum_probs=24.8
Q ss_pred CCCceEEEEEEEecChhhHHHHHhhhHHHHHhcccc
Q 040358 40 HNDNVNLSLYYETLCPGCAEFISEGLGKLFEKGLIS 75 (236)
Q Consensus 40 ~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~l~d 75 (236)
..+++.+.+|+.+-||.|+.+. ..|-++.+ ++.+
T Consensus 11 ~~~~~vlv~f~a~~C~~C~~~~-~~l~~l~~-~~~~ 44 (97)
T cd02949 11 ESDRLILVLYTSPTCGPCRTLK-PILNKVID-EFDG 44 (97)
T ss_pred hCCCeEEEEEECCCChhHHHHH-HHHHHHHH-HhCC
Confidence 3677889999999999999885 44555444 3544
No 41
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=51.13 E-value=9.9 Score=26.16 Aligned_cols=13 Identities=15% Similarity=0.317 Sum_probs=10.4
Q ss_pred eeeEEEECCeech
Q 040358 191 YVPWVTVNNKALR 203 (236)
Q Consensus 191 ~VPwI~ING~~~~ 203 (236)
.||.|+|||+.++
T Consensus 51 ~vP~v~i~g~~ig 63 (75)
T cd03418 51 TVPQIFIGDVHIG 63 (75)
T ss_pred ccCEEEECCEEEe
Confidence 6888888888764
No 42
>PHA03050 glutaredoxin; Provisional
Probab=49.39 E-value=11 Score=29.10 Aligned_cols=17 Identities=18% Similarity=0.682 Sum_probs=15.1
Q ss_pred EEEEEEEecChhhHHHH
Q 040358 45 NLSLYYETLCPGCAEFI 61 (236)
Q Consensus 45 ~V~vyyESlCPd~~~Fi 61 (236)
+|.||.-+-||+|.+-.
T Consensus 14 ~V~vys~~~CPyC~~ak 30 (108)
T PHA03050 14 KVTIFVKFTCPFCRNAL 30 (108)
T ss_pred CEEEEECCCChHHHHHH
Confidence 58999999999999764
No 43
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=47.93 E-value=30 Score=26.76 Aligned_cols=47 Identities=21% Similarity=0.422 Sum_probs=30.1
Q ss_pred CCCCCCCCCceEEEEEEEecChhhHHHHHhhhHHHHHhcccce-eeEEEE
Q 040358 34 NLPPPKHNDNVNLSLYYETLCPGCAEFISEGLGKLFEKGLISI-VNLRLI 82 (236)
Q Consensus 34 ~~~~~~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~l~d~-vdl~lv 82 (236)
.+.+..-..|+-|..|+-+-||.|+..+ ..|...+++ +.+. -+++++
T Consensus 9 ~v~l~~~~Gk~vll~F~atwC~~C~~~~-p~l~~l~~~-~~~~~~~v~vi 56 (132)
T cd02964 9 VVPVSALEGKTVGLYFSASWCPPCRAFT-PKLVEFYEK-LKEEGKNFEIV 56 (132)
T ss_pred cccHHHhCCCEEEEEEECCCCchHHHHH-HHHHHHHHH-HhhcCCCeEEE
Confidence 3444444568888899999999999986 456665553 4432 234444
No 44
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=47.88 E-value=12 Score=28.25 Aligned_cols=17 Identities=12% Similarity=0.354 Sum_probs=15.2
Q ss_pred EEEEEEEecChhhHHHH
Q 040358 45 NLSLYYETLCPGCAEFI 61 (236)
Q Consensus 45 ~V~vyyESlCPd~~~Fi 61 (236)
+|.||.-+.||+|.+.-
T Consensus 9 ~Vvvysk~~Cp~C~~ak 25 (99)
T TIGR02189 9 AVVIFSRSSCCMCHVVK 25 (99)
T ss_pred CEEEEECCCCHHHHHHH
Confidence 58999999999999874
No 45
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=47.31 E-value=15 Score=25.49 Aligned_cols=17 Identities=18% Similarity=0.548 Sum_probs=15.1
Q ss_pred EEEEEEEecChhhHHHH
Q 040358 45 NLSLYYETLCPGCAEFI 61 (236)
Q Consensus 45 ~V~vyyESlCPd~~~Fi 61 (236)
+|+||.-+.||+|++-.
T Consensus 2 ~v~ly~~~~C~~C~ka~ 18 (73)
T cd03027 2 RVTIYSRLGCEDCTAVR 18 (73)
T ss_pred EEEEEecCCChhHHHHH
Confidence 58899999999999874
No 46
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=47.09 E-value=43 Score=23.97 Aligned_cols=37 Identities=22% Similarity=0.277 Sum_probs=23.8
Q ss_pred ceEEEEEEEecChhhHHHHHhhhHHHHHhcccceeeEEE
Q 040358 43 NVNLSLYYETLCPGCAEFISEGLGKLFEKGLISIVNLRL 81 (236)
Q Consensus 43 kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~l 81 (236)
+.-+..||.+-|+.|+.+. .++..+.+ .+.+.-++.+
T Consensus 19 ~~~~v~f~~~~C~~C~~~~-~~~~~~~~-~~~~~~~~~~ 55 (104)
T cd02995 19 KDVLVEFYAPWCGHCKALA-PIYEELAE-KLKGDDNVVI 55 (104)
T ss_pred CcEEEEEECCCCHHHHHHh-hHHHHHHH-HhcCCCCEEE
Confidence 5677889999999999885 44554443 3444333333
No 47
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=47.07 E-value=41 Score=25.12 Aligned_cols=48 Identities=8% Similarity=0.059 Sum_probs=28.6
Q ss_pred HHHHHHHhcCCChhhHhhcccCchhHHHHHHHHhhhhhcCCCCceeeEEEECCeech
Q 040358 147 AWLTCCKDLELSPNFIKDCYESGIGRLLELKYGDETLHLNPPLEYVPWVTVNNKALR 203 (236)
Q Consensus 147 ~~~~Ca~~~g~d~~~I~~C~~~~~G~~Ll~~~~~~T~~l~p~~~~VPwI~ING~~~~ 203 (236)
...+-.++.|++...++- .+ ..++..+..+.| +...||.|+|||++++
T Consensus 32 ~ak~lL~~~~i~~~~~di-~~---~~~~~~~l~~~t-----g~~tvP~vfi~g~~iG 79 (97)
T TIGR00365 32 RAVQILKACGVPFAYVNV-LE---DPEIRQGIKEYS-----NWPTIPQLYVKGEFVG 79 (97)
T ss_pred HHHHHHHHcCCCEEEEEC-CC---CHHHHHHHHHHh-----CCCCCCEEEECCEEEe
Confidence 345556778887764422 11 233333333333 3468999999999975
No 48
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=46.58 E-value=13 Score=25.97 Aligned_cols=16 Identities=19% Similarity=0.656 Sum_probs=12.8
Q ss_pred EEEEEEecChhhHHHH
Q 040358 46 LSLYYETLCPGCAEFI 61 (236)
Q Consensus 46 V~vyyESlCPd~~~Fi 61 (236)
|.+|+...||+|++..
T Consensus 1 V~~f~~~~Cp~C~~~~ 16 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAK 16 (84)
T ss_pred CEEEECCCChhHHHHH
Confidence 5788888899988764
No 49
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=46.54 E-value=12 Score=27.01 Aligned_cols=16 Identities=19% Similarity=0.243 Sum_probs=11.8
Q ss_pred CCceeeEEEECCeech
Q 040358 188 PLEYVPWVTVNNKALR 203 (236)
Q Consensus 188 ~~~~VPwI~ING~~~~ 203 (236)
+.+.||.|+|||++++
T Consensus 50 g~~tvP~I~i~~~~ig 65 (80)
T COG0695 50 GQRTVPQIFIGGKHVG 65 (80)
T ss_pred CCCCcCEEEECCEEEe
Confidence 4577888888887764
No 50
>PF13728 TraF: F plasmid transfer operon protein
Probab=45.90 E-value=22 Score=30.80 Aligned_cols=43 Identities=16% Similarity=0.411 Sum_probs=30.1
Q ss_pred CCCCCCceEEEEEEEecChhhHHHHHhhhHHHHHhcccceeeEEEEeee
Q 040358 37 PPKHNDNVNLSLYYETLCPGCAEFISEGLGKLFEKGLISIVNLRLIPWG 85 (236)
Q Consensus 37 ~~~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lvP~G 85 (236)
+....++.-+-++|++.||+|+.|. |++. .+.+.-.|+++|+-
T Consensus 115 l~~la~~~gL~~F~~~~C~~C~~~~-----pil~-~~~~~yg~~v~~vs 157 (215)
T PF13728_consen 115 LKQLAQKYGLFFFYRSDCPYCQQQA-----PILQ-QFADKYGFSVIPVS 157 (215)
T ss_pred HHHHhhCeEEEEEEcCCCchhHHHH-----HHHH-HHHHHhCCEEEEEe
Confidence 3345578899999999999999774 4443 24444467777765
No 51
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=45.72 E-value=16 Score=26.25 Aligned_cols=17 Identities=18% Similarity=0.401 Sum_probs=15.5
Q ss_pred EEEEEEEecChhhHHHH
Q 040358 45 NLSLYYETLCPGCAEFI 61 (236)
Q Consensus 45 ~V~vyyESlCPd~~~Fi 61 (236)
+|++|+.+-||.|.+..
T Consensus 2 ~v~iy~~~~C~~C~~a~ 18 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAK 18 (85)
T ss_pred EEEEEeCCCChhHHHHH
Confidence 68999999999999874
No 52
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=45.47 E-value=45 Score=25.46 Aligned_cols=40 Identities=23% Similarity=0.271 Sum_probs=29.0
Q ss_pred CCCceEEEEEEEecChhhHHHHHhhhHHHHHhcccceeeEEEE
Q 040358 40 HNDNVNLSLYYETLCPGCAEFISEGLGKLFEKGLISIVNLRLI 82 (236)
Q Consensus 40 ~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lv 82 (236)
-..|+.|-.|+-+-||.|++.+ ..|...+++ +.+ -++.++
T Consensus 21 ~~gk~vvl~F~a~~C~~C~~~~-p~l~~l~~~-~~~-~~~~vi 60 (126)
T cd03012 21 LRGKVVLLDFWTYCCINCLHTL-PYLTDLEQK-YKD-DGLVVI 60 (126)
T ss_pred hCCCEEEEEEECCCCccHHHHH-HHHHHHHHH-cCc-CCeEEE
Confidence 3457888999999999999886 567777763 654 234444
No 53
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=44.02 E-value=13 Score=24.71 Aligned_cols=15 Identities=27% Similarity=0.809 Sum_probs=12.9
Q ss_pred EEEEEEecChhhHHH
Q 040358 46 LSLYYETLCPGCAEF 60 (236)
Q Consensus 46 V~vyyESlCPd~~~F 60 (236)
|++|+-+-||.|++.
T Consensus 2 i~lf~~~~C~~C~~~ 16 (74)
T TIGR02196 2 VKVYTTPWCPPCKKA 16 (74)
T ss_pred EEEEcCCCChhHHHH
Confidence 788999999999865
No 54
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=43.88 E-value=32 Score=26.87 Aligned_cols=35 Identities=9% Similarity=-0.086 Sum_probs=20.3
Q ss_pred CCceEEEEEEEe--cChhhHHHHHhhhHHHHHhccccee
Q 040358 41 NDNVNLSLYYET--LCPGCAEFISEGLGKLFEKGLISIV 77 (236)
Q Consensus 41 ~~kV~V~vyyES--lCPd~~~Fi~~qL~P~~~~~l~d~v 77 (236)
...+.|..||.. .||+|+.+- ..++.+.+++.+.+
T Consensus 26 ~~~~~v~~f~~~~~~cp~c~~i~--P~leela~e~~~~v 62 (111)
T cd02965 26 AGGDLVLLLAGDPVRFPEVLDVA--VVLPELLKAFPGRF 62 (111)
T ss_pred CCCCEEEEecCCcccCcchhhhH--hHHHHHHHHCCCcE
Confidence 334455666666 799999663 44444444455543
No 55
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=43.28 E-value=18 Score=24.02 Aligned_cols=16 Identities=25% Similarity=0.692 Sum_probs=13.2
Q ss_pred EEEEEEEecChhhHHH
Q 040358 45 NLSLYYETLCPGCAEF 60 (236)
Q Consensus 45 ~V~vyyESlCPd~~~F 60 (236)
+|++|+..-||+|++.
T Consensus 1 ~v~l~~~~~c~~c~~~ 16 (73)
T cd02976 1 EVTVYTKPDCPYCKAT 16 (73)
T ss_pred CEEEEeCCCChhHHHH
Confidence 4788999999999874
No 56
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=42.37 E-value=15 Score=25.78 Aligned_cols=15 Identities=13% Similarity=0.213 Sum_probs=12.4
Q ss_pred CceeeEEEECCeech
Q 040358 189 LEYVPWVTVNNKALR 203 (236)
Q Consensus 189 ~~~VPwI~ING~~~~ 203 (236)
...||.|+|||+.++
T Consensus 47 ~~~vP~i~i~g~~ig 61 (79)
T TIGR02181 47 RRTVPQIFIGDVHVG 61 (79)
T ss_pred CCCcCEEEECCEEEc
Confidence 478899999999875
No 57
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=42.33 E-value=40 Score=24.66 Aligned_cols=21 Identities=10% Similarity=0.147 Sum_probs=17.6
Q ss_pred CCceEEEEEEEecChhhHHHH
Q 040358 41 NDNVNLSLYYETLCPGCAEFI 61 (236)
Q Consensus 41 ~~kV~V~vyyESlCPd~~~Fi 61 (236)
..++-+..||..-||.|+.+.
T Consensus 10 ~~k~vlv~f~a~wC~~C~~~~ 30 (104)
T cd02953 10 QGKPVFVDFTADWCVTCKVNE 30 (104)
T ss_pred cCCeEEEEEEcchhHHHHHHH
Confidence 456777788999999999986
No 58
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=42.21 E-value=42 Score=28.50 Aligned_cols=34 Identities=24% Similarity=0.591 Sum_probs=24.3
Q ss_pred EEEEEEecChhhHHHHHhhhHHHHHhcccceeeEEEEeee
Q 040358 46 LSLYYETLCPGCAEFISEGLGKLFEKGLISIVNLRLIPWG 85 (236)
Q Consensus 46 V~vyyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lvP~G 85 (236)
|.+|+.+-||.|++++ ..|....++ + .+.++++.
T Consensus 73 lV~FwaswCp~C~~e~-P~L~~l~~~-~----g~~Vi~Vs 106 (181)
T PRK13728 73 VVLFMQGHCPYCHQFD-PVLKQLAQQ-Y----GFSVFPYT 106 (181)
T ss_pred EEEEECCCCHhHHHHH-HHHHHHHHH-c----CCEEEEEE
Confidence 7889999999999997 445555443 3 36666654
No 59
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=42.07 E-value=19 Score=24.74 Aligned_cols=15 Identities=20% Similarity=0.266 Sum_probs=11.4
Q ss_pred CceeeEEEECCeech
Q 040358 189 LEYVPWVTVNNKALR 203 (236)
Q Consensus 189 ~~~VPwI~ING~~~~ 203 (236)
...||.|+|||++++
T Consensus 48 ~~~vP~ifi~g~~ig 62 (72)
T cd03029 48 AMTVPQVFIDGELIG 62 (72)
T ss_pred CCCcCeEEECCEEEe
Confidence 467888888888765
No 60
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=41.61 E-value=21 Score=31.88 Aligned_cols=38 Identities=16% Similarity=0.331 Sum_probs=27.6
Q ss_pred CceEEEEEEEecChhhHHHHHhhhHHHHHhcccceeeEEEEeee
Q 040358 42 DNVNLSLYYETLCPGCAEFISEGLGKLFEKGLISIVNLRLIPWG 85 (236)
Q Consensus 42 ~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lvP~G 85 (236)
..--+-.||+|.||+|..|. |++. .+.+.-.|.++|+.
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~a-----Pil~-~fa~~yg~~v~~VS 180 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLA-----QVIN-DFRDTYGLSVIPVS 180 (248)
T ss_pred hcceEEEEECCCCchhHHHH-----HHHH-HHHHHhCCeEEEEe
Confidence 45788999999999999663 5554 35555567777765
No 61
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=41.60 E-value=1.5e+02 Score=25.77 Aligned_cols=20 Identities=15% Similarity=0.494 Sum_probs=16.7
Q ss_pred CceEEEEEEEecChhhHHHH
Q 040358 42 DNVNLSLYYETLCPGCAEFI 61 (236)
Q Consensus 42 ~kV~V~vyyESlCPd~~~Fi 61 (236)
.+.-+..||.+-||.|+++.
T Consensus 52 ~~~vlV~FyApWC~~Ck~~~ 71 (224)
T PTZ00443 52 TGPWFVKFYAPWCSHCRKMA 71 (224)
T ss_pred CCCEEEEEECCCChHHHHHH
Confidence 45668889999999999885
No 62
>PRK10638 glutaredoxin 3; Provisional
Probab=41.34 E-value=19 Score=25.73 Aligned_cols=16 Identities=31% Similarity=0.785 Sum_probs=10.8
Q ss_pred EEEEEEEecChhhHHH
Q 040358 45 NLSLYYETLCPGCAEF 60 (236)
Q Consensus 45 ~V~vyyESlCPd~~~F 60 (236)
+|++|..+-||+|++.
T Consensus 3 ~v~ly~~~~Cp~C~~a 18 (83)
T PRK10638 3 NVEIYTKATCPFCHRA 18 (83)
T ss_pred cEEEEECCCChhHHHH
Confidence 4667777777777755
No 63
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=41.24 E-value=18 Score=26.72 Aligned_cols=19 Identities=42% Similarity=0.808 Sum_probs=15.5
Q ss_pred EEEEEecChhhHHHHHhhhH
Q 040358 47 SLYYETLCPGCAEFISEGLG 66 (236)
Q Consensus 47 ~vyyESlCPd~~~Fi~~qL~ 66 (236)
.+|+.-+||||..|+ +.|-
T Consensus 5 ~lfgsn~Cpdca~a~-eyl~ 23 (85)
T COG4545 5 KLFGSNLCPDCAPAV-EYLE 23 (85)
T ss_pred eeeccccCcchHHHH-HHHH
Confidence 689999999999997 3343
No 64
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=40.06 E-value=53 Score=23.33 Aligned_cols=21 Identities=19% Similarity=0.524 Sum_probs=18.9
Q ss_pred CCceEEEEEEEecChhhHHHH
Q 040358 41 NDNVNLSLYYETLCPGCAEFI 61 (236)
Q Consensus 41 ~~kV~V~vyyESlCPd~~~Fi 61 (236)
..++.|..||.+-|+.|+.+.
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~ 32 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLA 32 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhC
Confidence 577899999999999999985
No 65
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=39.68 E-value=73 Score=23.46 Aligned_cols=20 Identities=15% Similarity=0.260 Sum_probs=16.9
Q ss_pred CceEEEEEEEecChhhHHHH
Q 040358 42 DNVNLSLYYETLCPGCAEFI 61 (236)
Q Consensus 42 ~kV~V~vyyESlCPd~~~Fi 61 (236)
.+.-+..||.+-||+|+++.
T Consensus 18 ~~~vlv~F~a~wC~~C~~~~ 37 (108)
T cd02996 18 AELVLVNFYADWCRFSQMLH 37 (108)
T ss_pred CCEEEEEEECCCCHHHHhhH
Confidence 45678899999999999874
No 66
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=39.61 E-value=19 Score=26.17 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=15.1
Q ss_pred ceeeEEEECCeechhhHHHHHHH
Q 040358 190 EYVPWVTVNNKALREDYEKFVEY 212 (236)
Q Consensus 190 ~~VPwI~ING~~~~~~~~nL~~~ 212 (236)
..||.|+|||++++.. ++|.++
T Consensus 56 ~tVP~ifi~g~~igG~-~dl~~~ 77 (86)
T TIGR02183 56 ETVPQIFVDEKHVGGC-TDFEQL 77 (86)
T ss_pred CCcCeEEECCEEecCH-HHHHHH
Confidence 6799999999987532 344443
No 67
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=39.13 E-value=59 Score=23.61 Aligned_cols=21 Identities=19% Similarity=0.509 Sum_probs=17.1
Q ss_pred CCceEEEEEEEecChhhHHHH
Q 040358 41 NDNVNLSLYYETLCPGCAEFI 61 (236)
Q Consensus 41 ~~kV~V~vyyESlCPd~~~Fi 61 (236)
.+++-|..||.+-||.|+++.
T Consensus 18 ~~~~v~v~f~a~wC~~C~~~~ 38 (104)
T cd03004 18 RKEPWLVDFYAPWCGPCQALL 38 (104)
T ss_pred CCCeEEEEEECCCCHHHHHHH
Confidence 345778889999999999874
No 68
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=39.11 E-value=56 Score=23.19 Aligned_cols=32 Identities=28% Similarity=0.521 Sum_probs=22.3
Q ss_pred CceEEEEEEEecChhhHHHHHhhhHHHHHhcccc
Q 040358 42 DNVNLSLYYETLCPGCAEFISEGLGKLFEKGLIS 75 (236)
Q Consensus 42 ~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~l~d 75 (236)
.+.-|..||...||.|+.+. ..+..+.+ .+.+
T Consensus 17 ~~~vvv~f~~~~C~~C~~~~-~~~~~~~~-~~~~ 48 (103)
T PF00085_consen 17 DKPVVVYFYAPWCPPCKAFK-PILEKLAK-EYKD 48 (103)
T ss_dssp SSEEEEEEESTTSHHHHHHH-HHHHHHHH-HTTT
T ss_pred CCCEEEEEeCCCCCcccccc-ceeccccc-cccc
Confidence 46778888889999999985 44444444 3544
No 69
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=38.85 E-value=24 Score=31.60 Aligned_cols=40 Identities=13% Similarity=0.296 Sum_probs=28.4
Q ss_pred CCCceEEEEEEEecChhhHHHHHhhhHHHHHhcccceeeEEEEeee
Q 040358 40 HNDNVNLSLYYETLCPGCAEFISEGLGKLFEKGLISIVNLRLIPWG 85 (236)
Q Consensus 40 ~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lvP~G 85 (236)
-.++--+-++|++.||+|+.|. |++. .+.+.-.|.++|+.
T Consensus 148 la~~~gL~fFy~~~C~~C~~~a-----pil~-~fa~~ygi~v~~VS 187 (256)
T TIGR02739 148 LSQSYGLFFFYRGKSPISQKMA-----PVIQ-AFAKEYGISVIPIS 187 (256)
T ss_pred HHhceeEEEEECCCCchhHHHH-----HHHH-HHHHHhCCeEEEEe
Confidence 4456789999999999999764 5554 25555557777765
No 70
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=38.16 E-value=1.3e+02 Score=23.89 Aligned_cols=34 Identities=12% Similarity=0.271 Sum_probs=24.8
Q ss_pred CCCceEEEEEEEecChhhHHHHHhhhHHHHHhcccc
Q 040358 40 HNDNVNLSLYYETLCPGCAEFISEGLGKLFEKGLIS 75 (236)
Q Consensus 40 ~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~l~d 75 (236)
...++.|-.|+-+-||.|++.. ..|....+ ++.+
T Consensus 59 ~~~k~~~l~f~a~~C~~C~~~~-~~l~~~~~-~~~~ 92 (173)
T PRK03147 59 LKGKGVFLNFWGTWCKPCEKEM-PYMNELYP-KYKE 92 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHH-HHHHHHHH-Hhhc
Confidence 3457788888899999999876 56666665 3543
No 71
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=37.99 E-value=74 Score=25.30 Aligned_cols=22 Identities=27% Similarity=0.601 Sum_probs=18.4
Q ss_pred CCCceEEEEEEEecChhhHHHH
Q 040358 40 HNDNVNLSLYYETLCPGCAEFI 61 (236)
Q Consensus 40 ~~~kV~V~vyyESlCPd~~~Fi 61 (236)
...++-|..||-.-|+.|+.+.
T Consensus 18 ~~gk~vvV~F~A~WC~~C~~~~ 39 (142)
T cd02950 18 SNGKPTLVEFYADWCTVCQEMA 39 (142)
T ss_pred hCCCEEEEEEECCcCHHHHHhH
Confidence 4567788889999999999875
No 72
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=37.81 E-value=17 Score=28.60 Aligned_cols=34 Identities=29% Similarity=0.586 Sum_probs=27.3
Q ss_pred ecChhhHHHHHhhhHHHHHhcccceeeEEEEeeecce
Q 040358 52 TLCPGCAEFISEGLGKLFEKGLISIVNLRLIPWGNAK 88 (236)
Q Consensus 52 SlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lvP~G~a~ 88 (236)
-.||||... +-|+-.+- .+.+.+|++.|+|.+.+
T Consensus 22 f~Cp~c~~i--EGlLa~~P-~l~~~ldV~rV~f~RPR 55 (112)
T PF11287_consen 22 FYCPHCAAI--EGLLASFP-DLRERLDVRRVDFPRPR 55 (112)
T ss_pred EECCchHHH--HhHHhhCh-hhhhcccEEEeCCCCch
Confidence 469999965 56776665 58889999999999873
No 73
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=37.75 E-value=65 Score=24.82 Aligned_cols=23 Identities=17% Similarity=0.314 Sum_probs=19.2
Q ss_pred CCCCceEEEEEEEecChhhHHHH
Q 040358 39 KHNDNVNLSLYYETLCPGCAEFI 61 (236)
Q Consensus 39 ~~~~kV~V~vyyESlCPd~~~Fi 61 (236)
....++-|..||-.-|++|+.+.
T Consensus 26 ~~~~~~vlV~FyA~WC~~Ck~l~ 48 (113)
T cd03006 26 RTDAEVSLVMYYAPWDAQSQAAR 48 (113)
T ss_pred ccCCCEEEEEEECCCCHHHHHHH
Confidence 35678889999999999999763
No 74
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=37.26 E-value=59 Score=24.66 Aligned_cols=19 Identities=26% Similarity=0.525 Sum_probs=17.1
Q ss_pred ceEEEEEEEecChhhHHHH
Q 040358 43 NVNLSLYYETLCPGCAEFI 61 (236)
Q Consensus 43 kV~V~vyyESlCPd~~~Fi 61 (236)
|+.+..|+.+-||.|+++.
T Consensus 15 k~vlv~f~a~wC~~C~~~~ 33 (125)
T cd02951 15 KPLLLLFSQPGCPYCDKLK 33 (125)
T ss_pred CcEEEEEeCCCCHHHHHHH
Confidence 7788889999999999986
No 75
>PRK09381 trxA thioredoxin; Provisional
Probab=35.84 E-value=98 Score=22.68 Aligned_cols=32 Identities=16% Similarity=0.299 Sum_probs=21.8
Q ss_pred CceEEEEEEEecChhhHHHHHhhhHHHHHhcccc
Q 040358 42 DNVNLSLYYETLCPGCAEFISEGLGKLFEKGLIS 75 (236)
Q Consensus 42 ~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~l~d 75 (236)
++.-|..||.+-||.|+.+. ..+....+ .+.+
T Consensus 21 ~~~vvv~f~~~~C~~C~~~~-p~~~~l~~-~~~~ 52 (109)
T PRK09381 21 DGAILVDFWAEWCGPCKMIA-PILDEIAD-EYQG 52 (109)
T ss_pred CCeEEEEEECCCCHHHHHHh-HHHHHHHH-HhCC
Confidence 55678888899999999885 34444443 3444
No 76
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=35.79 E-value=44 Score=27.30 Aligned_cols=14 Identities=29% Similarity=0.351 Sum_probs=12.6
Q ss_pred ceeeEEEECCeech
Q 040358 190 EYVPWVTVNNKALR 203 (236)
Q Consensus 190 ~~VPwI~ING~~~~ 203 (236)
..||-|+|||++++
T Consensus 59 ~tvPqVFI~G~~IG 72 (147)
T cd03031 59 VSLPRVFVDGRYLG 72 (147)
T ss_pred CCCCEEEECCEEEe
Confidence 67999999999975
No 77
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=35.64 E-value=59 Score=24.77 Aligned_cols=33 Identities=18% Similarity=0.402 Sum_probs=23.3
Q ss_pred CCCCCCceEEEEEEEecChhhHHHHHhhhHHHHH
Q 040358 37 PPKHNDNVNLSLYYETLCPGCAEFISEGLGKLFE 70 (236)
Q Consensus 37 ~~~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~ 70 (236)
+..-..|+-|..++-+-||.|++.+ ..|...++
T Consensus 13 l~~~~gk~vll~Fwa~wC~~C~~~~-p~l~~~~~ 45 (131)
T cd03009 13 VSSLEGKTVGLYFSASWCPPCRAFT-PKLVEFYE 45 (131)
T ss_pred HHHhCCcEEEEEEECCCChHHHHHh-HHHHHHHH
Confidence 3333457778888889999999875 45555554
No 78
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=34.55 E-value=67 Score=19.26 Aligned_cols=22 Identities=36% Similarity=0.757 Sum_probs=16.1
Q ss_pred EEEEEEecChhhHHHHHhhhHHH
Q 040358 46 LSLYYETLCPGCAEFISEGLGKL 68 (236)
Q Consensus 46 V~vyyESlCPd~~~Fi~~qL~P~ 68 (236)
|.+|+.+.||+|++.. ..+...
T Consensus 1 l~~~~~~~c~~c~~~~-~~~~~~ 22 (69)
T cd01659 1 LVLFYAPWCPFCQALR-PVLAEL 22 (69)
T ss_pred CEEEECCCChhHHhhh-hHHHHH
Confidence 4578999999999885 344443
No 79
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=34.44 E-value=50 Score=31.35 Aligned_cols=56 Identities=9% Similarity=-0.012 Sum_probs=33.1
Q ss_pred HHHHHHHhcCCChhhHhhcccCchhHHHHHHHHhhhhhcCCCCceeeEEEECCeech
Q 040358 147 AWLTCCKDLELSPNFIKDCYESGIGRLLELKYGDETLHLNPPLEYVPWVTVNNKALR 203 (236)
Q Consensus 147 ~~~~Ca~~~g~d~~~I~~C~~~~~G~~Ll~~~~~~T~~l~p~~~~VPwI~ING~~~~ 203 (236)
.+++.++..|++.+.|.- -++....+++.+..+.-....-+...||.|+|||++++
T Consensus 17 ~aK~~L~~~gi~~~~idi-~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~ig 72 (410)
T PRK12759 17 LAKSWFGANDIPFTQISL-DDDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIG 72 (410)
T ss_pred HHHHHHHHCCCCeEEEEC-CCChhHHHHHHHHhhccccccCCCCccCeEEECCEEEe
Confidence 346677788888764322 24455555555533210011124678999999999874
No 80
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=33.43 E-value=1.1e+02 Score=21.01 Aligned_cols=27 Identities=22% Similarity=0.408 Sum_probs=19.6
Q ss_pred ceEEEEEEEecChhhHHHHHhhhHHHHH
Q 040358 43 NVNLSLYYETLCPGCAEFISEGLGKLFE 70 (236)
Q Consensus 43 kV~V~vyyESlCPd~~~Fi~~qL~P~~~ 70 (236)
+.-|..||.+-||.|+.+. ..+..+.+
T Consensus 16 ~~~~v~f~~~~C~~C~~~~-~~~~~~~~ 42 (101)
T cd02961 16 KDVLVEFYAPWCGHCKALA-PEYEKLAK 42 (101)
T ss_pred CcEEEEEECCCCHHHHhhh-HHHHHHHH
Confidence 3678888889999999985 34444443
No 81
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=32.74 E-value=33 Score=26.71 Aligned_cols=20 Identities=20% Similarity=0.433 Sum_probs=16.2
Q ss_pred CceEEEEEEEecChhhHHHH
Q 040358 42 DNVNLSLYYETLCPGCAEFI 61 (236)
Q Consensus 42 ~kV~V~vyyESlCPd~~~Fi 61 (236)
.+.-|..|+.+-||+|+.|.
T Consensus 23 ~~~~iv~f~~~~Cp~C~~~~ 42 (122)
T TIGR01295 23 KETATFFIGRKTCPYCRKFS 42 (122)
T ss_pred CCcEEEEEECCCChhHHHHh
Confidence 44467889999999999884
No 82
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=32.29 E-value=1.2e+02 Score=21.67 Aligned_cols=20 Identities=30% Similarity=0.682 Sum_probs=15.9
Q ss_pred CceEEEEEEEecChhhHHHH
Q 040358 42 DNVNLSLYYETLCPGCAEFI 61 (236)
Q Consensus 42 ~kV~V~vyyESlCPd~~~Fi 61 (236)
.+.-+..+|..-|+.|+.+.
T Consensus 18 ~~~vlv~f~a~~C~~C~~~~ 37 (103)
T cd03001 18 DDVWLVEFYAPWCGHCKNLA 37 (103)
T ss_pred CCcEEEEEECCCCHHHHHHh
Confidence 45567778889999999985
No 83
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=32.09 E-value=89 Score=25.13 Aligned_cols=40 Identities=10% Similarity=0.247 Sum_probs=28.2
Q ss_pred CCceEEEEEEEecChhhHHHHHhhhHHHHHhcccceeeEEEEe
Q 040358 41 NDNVNLSLYYETLCPGCAEFISEGLGKLFEKGLISIVNLRLIP 83 (236)
Q Consensus 41 ~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lvP 83 (236)
..++.|-.|+-+-||.|++-+ ..|....+ ++.+ -+++++-
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~-~~l~~l~~-~~~~-~~v~~v~ 63 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIE-DRLNRLAK-EYGA-KGVAVVA 63 (171)
T ss_pred CCCEEEEEEECCCCccHHHHH-HHHHHHHH-HHhh-CCeEEEE
Confidence 668899999999999998775 56776665 3543 2344443
No 84
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=32.00 E-value=1.3e+02 Score=21.75 Aligned_cols=20 Identities=15% Similarity=0.577 Sum_probs=16.8
Q ss_pred CceEEEEEEEecChhhHHHH
Q 040358 42 DNVNLSLYYETLCPGCAEFI 61 (236)
Q Consensus 42 ~kV~V~vyyESlCPd~~~Fi 61 (236)
.++-+..||..-||.|+.+.
T Consensus 18 ~~~~~v~f~a~wC~~C~~~~ 37 (101)
T cd03003 18 GEIWFVNFYSPRCSHCHDLA 37 (101)
T ss_pred CCeEEEEEECCCChHHHHhH
Confidence 37788889999999999764
No 85
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=31.71 E-value=90 Score=23.67 Aligned_cols=19 Identities=21% Similarity=0.462 Sum_probs=14.0
Q ss_pred CceEEEEE-EEecChhhHHH
Q 040358 42 DNVNLSLY-YETLCPGCAEF 60 (236)
Q Consensus 42 ~kV~V~vy-yESlCPd~~~F 60 (236)
.++.|.|+ +-.-||+|+.+
T Consensus 21 ~~~~vvv~f~a~wC~~C~~~ 40 (113)
T cd02975 21 NPVDLVVFSSKEGCQYCEVT 40 (113)
T ss_pred CCeEEEEEeCCCCCCChHHH
Confidence 45667666 56799999865
No 86
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=31.45 E-value=83 Score=22.39 Aligned_cols=20 Identities=20% Similarity=0.507 Sum_probs=16.8
Q ss_pred CceEEEEEEEecChhhHHHH
Q 040358 42 DNVNLSLYYETLCPGCAEFI 61 (236)
Q Consensus 42 ~kV~V~vyyESlCPd~~~Fi 61 (236)
.+.-|..||.+-||.|+++.
T Consensus 18 ~~~~~v~f~a~~C~~C~~~~ 37 (105)
T cd02998 18 KKDVLVEFYAPWCGHCKNLA 37 (105)
T ss_pred CCcEEEEEECCCCHHHHhhC
Confidence 45678889999999999884
No 87
>PRK10329 glutaredoxin-like protein; Provisional
Probab=30.91 E-value=37 Score=24.48 Aligned_cols=16 Identities=19% Similarity=0.571 Sum_probs=13.0
Q ss_pred EEEEEEEecChhhHHH
Q 040358 45 NLSLYYETLCPGCAEF 60 (236)
Q Consensus 45 ~V~vyyESlCPd~~~F 60 (236)
+|++|.-.-||+|.+-
T Consensus 2 ~v~lYt~~~Cp~C~~a 17 (81)
T PRK10329 2 RITIYTRNDCVQCHAT 17 (81)
T ss_pred EEEEEeCCCCHhHHHH
Confidence 5788888888888864
No 88
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.33 E-value=69 Score=25.75 Aligned_cols=35 Identities=17% Similarity=0.306 Sum_probs=23.7
Q ss_pred EecChhhHHHHHhhhHHHHHhcccceeeEEEEeeecc
Q 040358 51 ETLCPGCAEFISEGLGKLFEKGLISIVNLRLIPWGNA 87 (236)
Q Consensus 51 ESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lvP~G~a 87 (236)
+|=||||++.. -.+..+++ ....-++|-.+.-|+-
T Consensus 42 qSWCPdCV~AE-Pvi~~alk-~ap~~~~~v~v~VG~r 76 (128)
T KOG3425|consen 42 QSWCPDCVAAE-PVINEALK-HAPEDVHFVHVYVGNR 76 (128)
T ss_pred CcCCchHHHhh-HHHHHHHH-hCCCceEEEEEEecCC
Confidence 45599999884 45556665 3566677777777764
No 89
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=29.18 E-value=81 Score=30.53 Aligned_cols=22 Identities=14% Similarity=0.558 Sum_probs=19.5
Q ss_pred CCCceEEEEEEEecChhhHHHH
Q 040358 40 HNDNVNLSLYYETLCPGCAEFI 61 (236)
Q Consensus 40 ~~~kV~V~vyyESlCPd~~~Fi 61 (236)
-+.+|+|.+|+...||+|.+.+
T Consensus 114 ~~~~~~i~~fv~~~Cp~Cp~~v 135 (517)
T PRK15317 114 LDGDFHFETYVSLSCHNCPDVV 135 (517)
T ss_pred cCCCeEEEEEEcCCCCCcHHHH
Confidence 4579999999999999999765
No 90
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=28.94 E-value=1.3e+02 Score=22.27 Aligned_cols=22 Identities=27% Similarity=0.644 Sum_probs=18.6
Q ss_pred CCCceEEEEEEEecChhhHHHH
Q 040358 40 HNDNVNLSLYYETLCPGCAEFI 61 (236)
Q Consensus 40 ~~~kV~V~vyyESlCPd~~~Fi 61 (236)
...++-|..||-+-||.|+++.
T Consensus 16 ~~g~~vlV~F~a~WC~~C~~~~ 37 (100)
T cd02999 16 NREDYTAVLFYASWCPFSASFR 37 (100)
T ss_pred cCCCEEEEEEECCCCHHHHhHh
Confidence 3468889999999999999774
No 91
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=28.78 E-value=1.2e+02 Score=21.96 Aligned_cols=21 Identities=19% Similarity=0.551 Sum_probs=17.2
Q ss_pred CCceEEEEEEEecChhhHHHH
Q 040358 41 NDNVNLSLYYETLCPGCAEFI 61 (236)
Q Consensus 41 ~~kV~V~vyyESlCPd~~~Fi 61 (236)
..+.-|..||..-|+.|+++.
T Consensus 17 ~~~~~lv~f~a~wC~~C~~~~ 37 (109)
T cd03002 17 TNYTTLVEFYAPWCGHCKNLK 37 (109)
T ss_pred CCCeEEEEEECCCCHHHHhhC
Confidence 356688889999999999874
No 92
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=28.51 E-value=1.3e+02 Score=21.09 Aligned_cols=26 Identities=23% Similarity=0.387 Sum_probs=18.8
Q ss_pred CceEEEEEEEecChhhHHHHHhhhHHH
Q 040358 42 DNVNLSLYYETLCPGCAEFISEGLGKL 68 (236)
Q Consensus 42 ~kV~V~vyyESlCPd~~~Fi~~qL~P~ 68 (236)
.+.-|-.||..-|+.|+.+. ..+..+
T Consensus 14 ~~~vvi~f~~~~C~~C~~~~-~~l~~~ 39 (101)
T TIGR01068 14 DKPVLVDFWAPWCGPCKMIA-PILEEL 39 (101)
T ss_pred CCcEEEEEECCCCHHHHHhC-HHHHHH
Confidence 45677888899999999885 344333
No 93
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=28.49 E-value=46 Score=24.82 Aligned_cols=23 Identities=22% Similarity=0.589 Sum_probs=19.1
Q ss_pred CCCCceEEEEEEEecChhhHHHH
Q 040358 39 KHNDNVNLSLYYETLCPGCAEFI 61 (236)
Q Consensus 39 ~~~~kV~V~vyyESlCPd~~~Fi 61 (236)
...+++.+..||..-||.|+++.
T Consensus 18 ~~~~k~vlv~f~a~wC~~C~~~~ 40 (109)
T cd02993 18 ERRNQSTLVVLYAPWCPFCQAME 40 (109)
T ss_pred hhcCCCEEEEEECCCCHHHHHHh
Confidence 44567889999999999999874
No 94
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=28.08 E-value=1.1e+02 Score=24.92 Aligned_cols=30 Identities=23% Similarity=0.434 Sum_probs=23.3
Q ss_pred CCCceEEEEEEEecChhhHHHHHhhhHHHHH
Q 040358 40 HNDNVNLSLYYETLCPGCAEFISEGLGKLFE 70 (236)
Q Consensus 40 ~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~ 70 (236)
-..|+-+--|+-|-||.|+.++ -.|...++
T Consensus 23 ~kgk~vlL~FwAsWCppCr~e~-P~L~~ly~ 52 (146)
T cd03008 23 LENRVLLLFFGAVVSPQCQLFA-PKLKDFFV 52 (146)
T ss_pred hCCCEEEEEEECCCChhHHHHH-HHHHHHHH
Confidence 4568888899999999999997 34555554
No 95
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=27.65 E-value=59 Score=25.62 Aligned_cols=30 Identities=13% Similarity=0.120 Sum_probs=21.6
Q ss_pred HHHHHHHhhhhhcCCCCceeeEEEECCeec
Q 040358 173 LLELKYGDETLHLNPPLEYVPWVTVNNKAL 202 (236)
Q Consensus 173 ~Ll~~~~~~T~~l~p~~~~VPwI~ING~~~ 202 (236)
+|-..+...+.+.+-+++.+|-|+||++++
T Consensus 65 ~L~~Ayqgv~~Aw~lgi~k~PAVVfD~~~V 94 (114)
T PF07511_consen 65 QLAQAYQGVVDAWSLGITKYPAVVFDDRYV 94 (114)
T ss_pred HHHHHHHHHHHHHHhCccccCEEEEcCCeE
Confidence 344444445555566899999999999985
No 96
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=27.24 E-value=35 Score=23.54 Aligned_cols=15 Identities=20% Similarity=0.585 Sum_probs=8.4
Q ss_pred EEEEEEecChhhHHH
Q 040358 46 LSLYYETLCPGCAEF 60 (236)
Q Consensus 46 V~vyyESlCPd~~~F 60 (236)
|+||.-.-||+|++-
T Consensus 1 v~ly~~~~Cp~C~~a 15 (72)
T TIGR02194 1 ITVYSKNNCVQCKMT 15 (72)
T ss_pred CEEEeCCCCHHHHHH
Confidence 345666666666544
No 97
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=27.05 E-value=1.1e+02 Score=23.31 Aligned_cols=41 Identities=17% Similarity=0.316 Sum_probs=28.1
Q ss_pred CCceEEEEEEEecChh-hHHHHHhhhHHHHHhccccee--eEEEEe
Q 040358 41 NDNVNLSLYYETLCPG-CAEFISEGLGKLFEKGLISIV--NLRLIP 83 (236)
Q Consensus 41 ~~kV~V~vyyESlCPd-~~~Fi~~qL~P~~~~~l~d~v--dl~lvP 83 (236)
..|+.|-.++-+-||. |++-+ ..|...++ .+.+.- ++.++-
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l-~~l~~~~~-~~~~~~~~~v~~v~ 64 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTL-ANLAQALK-QLGADGGDDVQVVF 64 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHH-HHHHHHHH-HhhHhhcCceEEEE
Confidence 4678888899999998 99886 45776665 355431 344443
No 98
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=26.74 E-value=1.1e+02 Score=22.55 Aligned_cols=32 Identities=22% Similarity=0.518 Sum_probs=23.2
Q ss_pred CCceEEEEEEEe-cChhhHHHHHhhhHHHHHhccc
Q 040358 41 NDNVNLSLYYET-LCPGCAEFISEGLGKLFEKGLI 74 (236)
Q Consensus 41 ~~kV~V~vyyES-lCPd~~~Fi~~qL~P~~~~~l~ 74 (236)
..+..|-.++.+ .||.|+.-+ .+|...+++ +.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l-~~l~~~~~~-~~ 56 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAEL-PELNELYKK-YK 56 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHH-HHHHHHHHH-HH
T ss_pred CCCcEEEEEeCccCccccccch-hHHHHHhhh-hc
Confidence 446777777777 999999887 567776653 44
No 99
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=26.70 E-value=1e+02 Score=22.03 Aligned_cols=27 Identities=19% Similarity=0.458 Sum_probs=19.5
Q ss_pred CceEEEEEEEecChhhHHHHHhhhHHHH
Q 040358 42 DNVNLSLYYETLCPGCAEFISEGLGKLF 69 (236)
Q Consensus 42 ~kV~V~vyyESlCPd~~~Fi~~qL~P~~ 69 (236)
.+..+..||.+-||.|+.+. ..+....
T Consensus 17 ~~~~~v~f~a~wC~~C~~~~-~~~~~~~ 43 (104)
T cd02997 17 EKHVLVMFYAPWCGHCKKMK-PEFTKAA 43 (104)
T ss_pred CCCEEEEEECCCCHHHHHhC-HHHHHHH
Confidence 34668889999999999885 3444443
No 100
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=26.57 E-value=36 Score=34.02 Aligned_cols=18 Identities=28% Similarity=0.794 Sum_probs=15.7
Q ss_pred ceEEEEEEEecChhhHHH
Q 040358 43 NVNLSLYYETLCPGCAEF 60 (236)
Q Consensus 43 kV~V~vyyESlCPd~~~F 60 (236)
+-.+..||-|-|++|++|
T Consensus 58 ~~~lVEFy~swCGhCr~F 75 (606)
T KOG1731|consen 58 KAKLVEFYNSWCGHCRAF 75 (606)
T ss_pred hhHHHHHHHhhhhhhhhc
Confidence 456778999999999999
No 101
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=25.59 E-value=1.4e+02 Score=23.24 Aligned_cols=33 Identities=9% Similarity=0.198 Sum_probs=21.8
Q ss_pred CCceEEEEEEEecChhhHHHHHhhhHHHHHhcccc
Q 040358 41 NDNVNLSLYYETLCPGCAEFISEGLGKLFEKGLIS 75 (236)
Q Consensus 41 ~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~l~d 75 (236)
..++-|.-|+-+-||.|+.+ ..+++.+..++.+
T Consensus 13 ~~~~vVV~F~A~WCgpCk~m--~P~le~la~~~~~ 45 (114)
T cd02954 13 EEKVVVIRFGRDWDPVCMQM--DEVLAKIAEDVSN 45 (114)
T ss_pred CCCEEEEEEECCCChhHHHH--HHHHHHHHHHccC
Confidence 56778888999999999955 2344433333444
No 102
>PTZ00051 thioredoxin; Provisional
Probab=25.57 E-value=1.7e+02 Score=20.67 Aligned_cols=28 Identities=11% Similarity=0.284 Sum_probs=20.6
Q ss_pred CCceEEEEEEEecChhhHHHHHhhhHHHH
Q 040358 41 NDNVNLSLYYETLCPGCAEFISEGLGKLF 69 (236)
Q Consensus 41 ~~kV~V~vyyESlCPd~~~Fi~~qL~P~~ 69 (236)
..+.-|-.||.+-||.|+.+. ..+....
T Consensus 17 ~~~~vli~f~~~~C~~C~~~~-~~l~~l~ 44 (98)
T PTZ00051 17 QNELVIVDFYAEWCGPCKRIA-PFYEECS 44 (98)
T ss_pred cCCeEEEEEECCCCHHHHHHh-HHHHHHH
Confidence 456778889999999999985 3444333
No 103
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=25.37 E-value=49 Score=22.78 Aligned_cols=15 Identities=33% Similarity=0.837 Sum_probs=7.6
Q ss_pred EEEEEEecChhhHHH
Q 040358 46 LSLYYETLCPGCAEF 60 (236)
Q Consensus 46 V~vyyESlCPd~~~F 60 (236)
|++|+-..||.|++-
T Consensus 2 i~Ly~~~~~p~c~kv 16 (77)
T cd03040 2 ITLYQYKTCPFCCKV 16 (77)
T ss_pred EEEEEcCCCHHHHHH
Confidence 445555555555543
No 104
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=25.21 E-value=2.1e+02 Score=20.85 Aligned_cols=29 Identities=17% Similarity=0.395 Sum_probs=21.2
Q ss_pred CCceEEEEEEEecChhhHHHHHhhhHHHHH
Q 040358 41 NDNVNLSLYYETLCPGCAEFISEGLGKLFE 70 (236)
Q Consensus 41 ~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~ 70 (236)
..++-|..||-+-||.|+.+. ..+....+
T Consensus 16 ~~~~vvv~F~a~wC~~Ck~~~-p~l~~~~~ 44 (102)
T cd02948 16 NKGLTVVDVYQEWCGPCKAVV-SLFKKIKN 44 (102)
T ss_pred cCCeEEEEEECCcCHhHHHHh-HHHHHHHH
Confidence 456788899999999999885 33444443
No 105
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=23.64 E-value=2.9e+02 Score=22.43 Aligned_cols=21 Identities=24% Similarity=0.515 Sum_probs=17.0
Q ss_pred CCceEEEEEEEecChhhHHHH
Q 040358 41 NDNVNLSLYYETLCPGCAEFI 61 (236)
Q Consensus 41 ~~kV~V~vyyESlCPd~~~Fi 61 (236)
..++-|..||.+-||.|+.+.
T Consensus 46 ~~~~vvV~Fya~wC~~Ck~l~ 66 (152)
T cd02962 46 KRVTWLVEFFTTWSPECVNFA 66 (152)
T ss_pred CCCEEEEEEECCCCHHHHHHH
Confidence 346778889999999999664
No 106
>PRK10996 thioredoxin 2; Provisional
Probab=23.34 E-value=1.6e+02 Score=23.08 Aligned_cols=30 Identities=13% Similarity=0.315 Sum_probs=22.2
Q ss_pred CCCceEEEEEEEecChhhHHHHHhhhHHHHH
Q 040358 40 HNDNVNLSLYYETLCPGCAEFISEGLGKLFE 70 (236)
Q Consensus 40 ~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~ 70 (236)
..+++-|..||-+-||.|+.+. ..+....+
T Consensus 50 ~~~k~vvv~F~a~wC~~C~~~~-~~l~~l~~ 79 (139)
T PRK10996 50 QDDLPVVIDFWAPWCGPCRNFA-PIFEDVAA 79 (139)
T ss_pred hCCCeEEEEEECCCCHHHHHHH-HHHHHHHH
Confidence 3467788999999999999985 34544443
No 107
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=23.11 E-value=1.4e+02 Score=25.27 Aligned_cols=21 Identities=19% Similarity=0.559 Sum_probs=18.4
Q ss_pred CCCceEEEEEEEecChhhHHH
Q 040358 40 HNDNVNLSLYYETLCPGCAEF 60 (236)
Q Consensus 40 ~~~kV~V~vyyESlCPd~~~F 60 (236)
-..+|.|.+|+-+-||+|...
T Consensus 131 ~~~pv~I~~F~a~~C~~C~~~ 151 (215)
T TIGR02187 131 LDEPVRIEVFVTPTCPYCPYA 151 (215)
T ss_pred cCCCcEEEEEECCCCCCcHHH
Confidence 467899999999999999965
No 108
>PF15202 Adipogenin: Adipogenin
Probab=23.07 E-value=53 Score=23.75 Aligned_cols=20 Identities=30% Similarity=0.499 Sum_probs=11.8
Q ss_pred CccchhHHH--HHHHHHHHhhc
Q 040358 2 TSHQLYFFI--VFTSLMFMFIS 21 (236)
Q Consensus 2 ~~~~~~~~~--~~~~~~~~~~~ 21 (236)
++|-|+|.+ +..||+||.|.
T Consensus 13 tfsflvfwlclpv~lllfl~iv 34 (81)
T PF15202_consen 13 TFSFLVFWLCLPVGLLLFLLIV 34 (81)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 345555554 66667776664
No 109
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=22.98 E-value=1.1e+02 Score=22.96 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=19.7
Q ss_pred CCceEEEEEEEecChhhHHHHHhhhHH
Q 040358 41 NDNVNLSLYYETLCPGCAEFISEGLGK 67 (236)
Q Consensus 41 ~~kV~V~vyyESlCPd~~~Fi~~qL~P 67 (236)
..++.|..|+-+-||.|+..+ ..|..
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~-~~l~~ 49 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEH-PVLMA 49 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHH-HHHHH
Confidence 457778888899999999875 34443
No 110
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=22.87 E-value=76 Score=25.02 Aligned_cols=38 Identities=16% Similarity=0.098 Sum_probs=24.9
Q ss_pred cccCchhHHHHHH----HHhhhhhcCCCCceeeEEEECCeec
Q 040358 165 CYESGIGRLLELK----YGDETLHLNPPLEYVPWVTVNNKAL 202 (236)
Q Consensus 165 C~~~~~G~~Ll~~----~~~~T~~l~p~~~~VPwI~ING~~~ 202 (236)
=.++..|.++.++ +...+.+-+-+++.+|-|+||++++
T Consensus 54 ~l~sp~~~~~q~~l~~Ayqgv~~Aw~lGi~k~PAVV~D~~~V 95 (113)
T TIGR03757 54 RLQSPDWARLQRRLAQAYQGVADAWQLGVTKIPAVVVDRRYV 95 (113)
T ss_pred HHcCccHHHHHHHHHHHHHHHHHHHHcCCccCCEEEEcCCeE
Confidence 3445555544443 3344455555899999999999985
No 111
>COG3917 NahD 2-hydroxychromene-2-carboxylate isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=22.82 E-value=3.3e+02 Score=23.54 Aligned_cols=57 Identities=7% Similarity=-0.068 Sum_probs=42.6
Q ss_pred hhHHHHHHHHhcCCChhhHhhcccCchhHHHHHHHHhhhhhcCCCCceeeEEEECCeec
Q 040358 144 RKEAWLTCCKDLELSPNFIKDCYESGIGRLLELKYGDETLHLNPPLEYVPWVTVNNKAL 202 (236)
Q Consensus 144 ~~~~~~~Ca~~~g~d~~~I~~C~~~~~G~~Ll~~~~~~T~~l~p~~~~VPwI~ING~~~ 202 (236)
.++....-|+.+|+|.+.+..=..+++-++-++.+ ...+++.++=..|+++|.++..
T Consensus 131 epev~~~vA~~aGlDg~al~A~~gd~eik~~l~a~--~~~a~srGvfGaPtfivg~q~f 187 (203)
T COG3917 131 EPEVVYAVANAAGLDGAALLALLGDDEIKARLKAN--TAEAVSRGVFGAPTFIVGDQLF 187 (203)
T ss_pred ChHHHHHHHHHcCCCHHHHHhhcCCHHHHHHHHhh--HHHHHhcCccCCCeEEECCeee
Confidence 44556678899999998888877666666666653 3345667889999999999863
No 112
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=22.61 E-value=2.5e+02 Score=19.52 Aligned_cols=30 Identities=23% Similarity=0.472 Sum_probs=22.2
Q ss_pred CCCceEEEEEEEecChhhHHHHHhhhHHHHH
Q 040358 40 HNDNVNLSLYYETLCPGCAEFISEGLGKLFE 70 (236)
Q Consensus 40 ~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~ 70 (236)
...+..|-.|+-+-||.|++++ ..|....+
T Consensus 17 ~~~k~~ll~f~~~~C~~C~~~~-~~l~~~~~ 46 (116)
T cd02966 17 LKGKVVLVNFWASWCPPCRAEM-PELEALAK 46 (116)
T ss_pred cCCCEEEEEeecccChhHHHHh-HHHHHHHH
Confidence 3467888889999999999875 44555444
No 113
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=22.45 E-value=2e+02 Score=20.32 Aligned_cols=21 Identities=10% Similarity=0.213 Sum_probs=17.5
Q ss_pred CCceEEEEEEEecChhhHHHH
Q 040358 41 NDNVNLSLYYETLCPGCAEFI 61 (236)
Q Consensus 41 ~~kV~V~vyyESlCPd~~~Fi 61 (236)
..++-|..||-+-||.|+.+.
T Consensus 11 ~~~~vlv~f~a~wC~~C~~~~ 31 (96)
T cd02956 11 TQVPVVVDFWAPRSPPSKELL 31 (96)
T ss_pred CCCeEEEEEECCCChHHHHHH
Confidence 356788889999999999774
No 114
>PTZ00102 disulphide isomerase; Provisional
Probab=22.40 E-value=64 Score=30.39 Aligned_cols=21 Identities=19% Similarity=0.624 Sum_probs=17.3
Q ss_pred CCceEEEEEEEecChhhHHHH
Q 040358 41 NDNVNLSLYYETLCPGCAEFI 61 (236)
Q Consensus 41 ~~kV~V~vyyESlCPd~~~Fi 61 (236)
..+.-+..||-.-||+|+++.
T Consensus 48 ~~~~~lv~f~a~wC~~Ck~~~ 68 (477)
T PTZ00102 48 ENEIVLVKFYAPWCGHCKRLA 68 (477)
T ss_pred cCCcEEEEEECCCCHHHHHhh
Confidence 356788889999999999774
No 115
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=21.85 E-value=1.8e+02 Score=21.25 Aligned_cols=20 Identities=20% Similarity=0.667 Sum_probs=16.9
Q ss_pred CceEEEEEEEecChhhHHHH
Q 040358 42 DNVNLSLYYETLCPGCAEFI 61 (236)
Q Consensus 42 ~kV~V~vyyESlCPd~~~Fi 61 (236)
.|+.|..|+-+-||.|+..+
T Consensus 21 gk~vvl~F~~~wC~~C~~~~ 40 (114)
T cd02967 21 GRPTLLFFLSPTCPVCKKLL 40 (114)
T ss_pred CCeEEEEEECCCCcchHhHh
Confidence 57778888999999999875
No 116
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=21.65 E-value=1.3e+02 Score=20.65 Aligned_cols=31 Identities=26% Similarity=0.507 Sum_probs=24.2
Q ss_pred CCceeeEEEECCeechhhHHHHHHHHHHhccC
Q 040358 188 PLEYVPWVTVNNKALREDYEKFVEYVCGAYKG 219 (236)
Q Consensus 188 ~~~~VPwI~ING~~~~~~~~nL~~~IC~~y~~ 219 (236)
+...||.++.||..+.++ .+..+.+-+.|.+
T Consensus 43 p~~~vPvL~~~g~~l~dS-~~I~~yL~~~~~~ 73 (75)
T PF13417_consen 43 PKGKVPVLVDDGEVLTDS-AAIIEYLEERYPG 73 (75)
T ss_dssp TTSBSSEEEETTEEEESH-HHHHHHHHHHSTS
T ss_pred ccccceEEEECCEEEeCH-HHHHHHHHHHcCC
Confidence 568999999999987654 5667777777765
No 117
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=21.42 E-value=2.8e+02 Score=20.88 Aligned_cols=20 Identities=25% Similarity=0.604 Sum_probs=17.3
Q ss_pred CceEEEEEEEecChhhHHHH
Q 040358 42 DNVNLSLYYETLCPGCAEFI 61 (236)
Q Consensus 42 ~kV~V~vyyESlCPd~~~Fi 61 (236)
.+.-|..||.+-||.|+.+.
T Consensus 19 ~~~vvV~f~a~wC~~C~~~~ 38 (114)
T cd02992 19 PSAWLVEFYASWCGHCRAFA 38 (114)
T ss_pred CCeEEEEEECCCCHHHHHHh
Confidence 46788899999999999884
No 118
>PF13198 DUF4014: Protein of unknown function (DUF4014)
Probab=21.10 E-value=54 Score=23.74 Aligned_cols=17 Identities=47% Similarity=0.819 Sum_probs=10.2
Q ss_pred cchhHHHHHHHHHHHhhc
Q 040358 4 HQLYFFIVFTSLMFMFIS 21 (236)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~ 21 (236)
++.+|||.+.++| ++|+
T Consensus 16 ~efLF~ilfIvlm-ipI~ 32 (72)
T PF13198_consen 16 TEFLFFILFIVLM-IPIS 32 (72)
T ss_pred HHHHHHHHHHHHH-HHHH
Confidence 4567777666665 3554
No 119
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=20.09 E-value=2.8e+02 Score=18.40 Aligned_cols=19 Identities=11% Similarity=0.384 Sum_probs=16.1
Q ss_pred ceEEEEEEEecChhhHHHH
Q 040358 43 NVNLSLYYETLCPGCAEFI 61 (236)
Q Consensus 43 kV~V~vyyESlCPd~~~Fi 61 (236)
+.-+.+||..-|+.|+.+.
T Consensus 11 ~~~ll~~~~~~C~~C~~~~ 29 (93)
T cd02947 11 KPVVVDFWAPWCGPCKAIA 29 (93)
T ss_pred CcEEEEEECCCChhHHHhh
Confidence 6678888999999999774
Done!