BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 040360
         (198 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q58FX0|BAP2_ARATH BON1-associated protein 2 OS=Arabidopsis thaliana GN=BAP2 PE=1 SV=1
          Length = 207

 Score =  141 bits (356), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 82/203 (40%), Positives = 122/203 (60%), Gaps = 25/203 (12%)

Query: 10  RTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELP 69
           R++E+ V+S E L++DR+ +KK  +++V+ D       +KVDE GGS+P W ++  +E+P
Sbjct: 8   RSLEIEVISAEGLKVDRKPLKKKTYSVVRIDEK--SWASKVDELGGSYPIWKDRFDMEMP 65

Query: 70  MHA--RFITVQVQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRN 127
           ++A  RFI+++V  ++  S SG + N    VG+A+IPV+DF+GG+AP+ +L+FLSYRLR+
Sbjct: 66  INASVRFISIEVYYRT--SGSGRDKN----VGYAKIPVTDFMGGFAPQGHLNFLSYRLRD 119

Query: 128 AKGDKNGIINVSVR---------------SLKVAADQHASSSNYLSKAPRLNVQGYVPAY 172
             GDK GI+NVS+                S  VA   +A+ S   + A R N        
Sbjct: 120 EYGDKCGIVNVSIMVKPDGNDHKSSLPSSSFAVAPVDYAACSWQATAAARNNQMWRPRTS 179

Query: 173 SGFASGFGAPVGGVVTGVPVWCA 195
           S   S  G   G VVTGVPVWCA
Sbjct: 180 SSMVSTAGYGGGRVVTGVPVWCA 202


>sp|Q941L2|BAP1_ARATH BON1-associated protein 1 OS=Arabidopsis thaliana GN=BAP1 PE=1 SV=1
          Length = 192

 Score =  109 bits (272), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/192 (36%), Positives = 108/192 (56%), Gaps = 32/192 (16%)

Query: 10  RTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYC-TTKVDESGGSHPSWNEKLVIEL 68
           +T+E+ + S E L+++RR IKK  FA+V+ D   + C  + +DES  S+P+WN K  + +
Sbjct: 18  KTLEIDLRSAEGLKLNRRPIKKKTFAVVKID---EKCRKSNLDESRRSNPTWNYKSEMPI 74

Query: 69  PMHARFITVQVQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNA 128
             + +FI ++V  ++ S        H+K +G A+IP +DF+G Y+PE +L+FLSYRLR+ 
Sbjct: 75  NGNEQFIFIEVFYRTGSG-------HDKKIGEAKIPTNDFMGRYSPEGHLNFLSYRLRDE 127

Query: 129 KGDKNGIINVSV-------RSLKVAADQHASSSNYLSKAPRLNVQGYVPAYSGFASGFGA 181
            GDK GI+N+S+       R     + Q A +  +    PRL              G+G 
Sbjct: 128 FGDKCGIVNLSILVKSDPTRDYGACSSQAAVTGLW---RPRLETAS--------IDGYG- 175

Query: 182 PVGGVVTGVPVW 193
             G  VTGVPVW
Sbjct: 176 --GRTVTGVPVW 185


>sp|Q86YA3|CD021_HUMAN Uncharacterized protein C4orf21 OS=Homo sapiens GN=C4orf21 PE=2
           SV=2
          Length = 1062

 Score = 31.6 bits (70), Expect = 3.5,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%)

Query: 50  VDES-GGSHPSWNEKLVIELPMHARFITVQVQCKS 83
           VD+S G + PSWN+++ +E+P      ++QV C S
Sbjct: 387 VDQSVGNNDPSWNQEVKLEIPSFNESSSLQVTCSS 421


>sp|Q7PC86|AB35G_ARATH ABC transporter G family member 35 OS=Arabidopsis thaliana GN=ABCG35
            PE=2 SV=1
          Length = 1442

 Score = 30.0 bits (66), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 18/33 (54%)

Query: 157  LSKAPRLNVQGYVPAYSGFASGFGAPVGGVVTG 189
            L  AP L V+ Y+    GF S +  PV GV+ G
Sbjct: 1389 LGGAPGLTVKQYIKDQYGFESDYMGPVAGVLVG 1421


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.316    0.132    0.389 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,654,882
Number of Sequences: 539616
Number of extensions: 2916778
Number of successful extensions: 9221
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 9205
Number of HSP's gapped (non-prelim): 14
length of query: 198
length of database: 191,569,459
effective HSP length: 111
effective length of query: 87
effective length of database: 131,672,083
effective search space: 11455471221
effective search space used: 11455471221
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)