Query 040360
Match_columns 198
No_of_seqs 150 out of 1306
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 07:42:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040360.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040360hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04016 C2_Tollip C2 domain pr 99.9 4.7E-26 1E-30 174.5 15.8 117 10-141 2-120 (121)
2 cd04051 C2_SRC2_like C2 domain 99.9 1.4E-25 3.1E-30 170.7 12.7 120 11-138 1-125 (125)
3 cd08681 C2_fungal_Inn1p-like C 99.9 1.3E-23 2.8E-28 158.2 13.9 117 10-143 1-118 (118)
4 cd04019 C2C_MCTP_PRT_plant C2 99.9 2.2E-23 4.7E-28 165.1 15.2 136 11-157 1-145 (150)
5 cd08682 C2_Rab11-FIP_classI C2 99.9 4.2E-23 9.2E-28 157.7 13.9 117 12-141 1-126 (126)
6 cd08379 C2D_MCTP_PRT_plant C2 99.9 9.8E-23 2.1E-27 157.2 13.4 117 11-138 1-125 (126)
7 cd04042 C2A_MCTP_PRT C2 domain 99.9 2.5E-22 5.4E-27 152.2 15.1 118 12-144 2-120 (121)
8 cd04022 C2A_MCTP_PRT_plant C2 99.9 3.9E-22 8.6E-27 152.5 14.4 120 11-144 1-126 (127)
9 cd04015 C2_plant_PLD C2 domain 99.9 6.3E-22 1.4E-26 157.8 15.6 120 9-144 6-158 (158)
10 cd08378 C2B_MCTP_PRT_plant C2 99.9 4.1E-22 8.8E-27 152.0 13.7 117 12-144 2-120 (121)
11 cd04033 C2_NEDD4_NEDD4L C2 dom 99.9 6.6E-22 1.4E-26 151.7 14.9 124 11-143 1-132 (133)
12 cd08375 C2_Intersectin C2 doma 99.9 1E-21 2.2E-26 153.0 15.9 127 3-143 8-135 (136)
13 cd08678 C2_C21orf25-like C2 do 99.9 2.2E-21 4.7E-26 148.3 15.3 121 12-148 1-124 (126)
14 cd04044 C2A_Tricalbin-like C2 99.9 1.7E-21 3.8E-26 147.0 14.6 121 10-144 2-123 (124)
15 cd08377 C2C_MCTP_PRT C2 domain 99.9 4E-21 8.6E-26 144.4 15.2 116 10-143 1-118 (119)
16 cd08401 C2A_RasA2_RasA3 C2 dom 99.9 5.9E-21 1.3E-25 145.6 15.5 117 12-143 2-121 (121)
17 cd04046 C2_Calpain C2 domain p 99.9 1.3E-20 2.8E-25 144.3 15.3 117 10-145 3-123 (126)
18 cd08400 C2_Ras_p21A1 C2 domain 99.9 1.5E-20 3.3E-25 144.1 15.6 118 10-146 4-125 (126)
19 cd04025 C2B_RasA1_RasA4 C2 dom 99.9 1.2E-20 2.6E-25 143.2 14.6 116 11-141 1-123 (123)
20 cd04054 C2A_Rasal1_RasA4 C2 do 99.9 1.6E-20 3.5E-25 142.8 15.0 117 12-141 2-120 (121)
21 cd04014 C2_PKC_epsilon C2 doma 99.9 2.1E-20 4.5E-25 143.8 15.6 120 7-145 1-130 (132)
22 cd04024 C2A_Synaptotagmin-like 99.9 1.7E-20 3.7E-25 142.5 14.2 120 10-141 1-127 (128)
23 cd08376 C2B_MCTP_PRT C2 domain 99.9 4.5E-20 9.8E-25 138.4 15.4 112 11-141 1-113 (116)
24 cd08382 C2_Smurf-like C2 domai 99.9 2.5E-20 5.4E-25 142.1 14.1 118 11-140 1-122 (123)
25 KOG1030 Predicted Ca2+-depende 99.8 8.9E-21 1.9E-25 151.4 10.9 96 7-112 3-98 (168)
26 cd04036 C2_cPLA2 C2 domain pre 99.8 5.2E-20 1.1E-24 139.1 14.5 115 12-144 2-118 (119)
27 cd08391 C2A_C2C_Synaptotagmin_ 99.8 7.4E-20 1.6E-24 137.5 13.6 113 10-141 1-120 (121)
28 cd04049 C2_putative_Elicitor-r 99.8 1.2E-19 2.5E-24 138.0 13.1 104 10-127 1-108 (124)
29 cd08373 C2A_Ferlin C2 domain f 99.8 3.7E-19 7.9E-24 135.9 15.2 114 16-147 2-119 (127)
30 cd04027 C2B_Munc13 C2 domain s 99.8 3.7E-19 8E-24 136.4 14.4 116 11-140 2-127 (127)
31 cd08395 C2C_Munc13 C2 domain t 99.8 2.5E-19 5.5E-24 137.1 13.0 103 11-127 1-112 (120)
32 cd04045 C2C_Tricalbin-like C2 99.8 3.4E-19 7.4E-24 135.7 13.7 105 10-129 1-105 (120)
33 cd08381 C2B_PI3K_class_II C2 d 99.8 2.1E-19 4.6E-24 137.2 12.1 103 9-125 12-121 (122)
34 cd04050 C2B_Synaptotagmin-like 99.8 2.6E-19 5.6E-24 132.7 11.9 101 11-127 1-102 (105)
35 cd04039 C2_PSD C2 domain prese 99.8 3.2E-19 6.9E-24 133.8 12.0 94 10-113 1-100 (108)
36 cd08394 C2A_Munc13 C2 domain f 99.8 3.6E-19 7.8E-24 137.4 12.2 100 10-127 2-101 (127)
37 cd04040 C2D_Tricalbin-like C2 99.8 6.8E-19 1.5E-23 131.7 13.4 113 12-138 1-114 (115)
38 cd04017 C2D_Ferlin C2 domain f 99.8 1.6E-18 3.5E-23 134.1 15.0 121 11-145 2-133 (135)
39 cd04041 C2A_fungal C2 domain f 99.8 4E-19 8.7E-24 133.1 10.9 94 10-111 1-100 (111)
40 cd04021 C2_E3_ubiquitin_ligase 99.8 2.3E-18 5E-23 131.8 15.3 120 10-140 2-124 (125)
41 cd00275 C2_PLC_like C2 domain 99.8 2.8E-18 6E-23 130.1 15.4 116 10-141 2-126 (128)
42 cd08688 C2_KIAA0528-like C2 do 99.8 6.8E-19 1.5E-23 131.6 11.7 104 12-127 1-109 (110)
43 cd04043 C2_Munc13_fungal C2 do 99.8 3.4E-18 7.4E-23 129.9 15.6 119 11-145 2-122 (126)
44 cd04011 C2B_Ferlin C2 domain s 99.8 1.2E-18 2.6E-23 130.2 12.8 102 11-128 5-111 (111)
45 cd08392 C2A_SLP-3 C2 domain fi 99.8 9E-19 2E-23 135.1 12.2 109 7-125 12-127 (128)
46 cd08677 C2A_Synaptotagmin-13 C 99.8 9E-19 2E-23 133.7 11.7 93 8-111 12-109 (118)
47 cd04029 C2A_SLP-4_5 C2 domain 99.8 1.7E-18 3.7E-23 132.7 13.1 105 8-125 13-124 (125)
48 cd08385 C2A_Synaptotagmin-1-5- 99.8 1.7E-18 3.7E-23 131.4 12.9 106 8-126 14-123 (124)
49 cd04028 C2B_RIM1alpha C2 domai 99.8 2E-18 4.2E-23 136.4 13.0 108 9-129 28-140 (146)
50 cd08393 C2A_SLP-1_2 C2 domain 99.8 1.8E-18 3.9E-23 132.4 12.0 105 8-125 13-124 (125)
51 cd04010 C2B_RasA3 C2 domain se 99.8 2.2E-18 4.8E-23 136.3 12.6 104 11-128 1-123 (148)
52 PLN03008 Phospholipase D delta 99.8 3.5E-18 7.5E-23 163.8 16.2 132 1-148 1-181 (868)
53 cd08387 C2A_Synaptotagmin-8 C2 99.8 2.9E-18 6.4E-23 130.2 12.6 106 8-126 14-123 (124)
54 cd08685 C2_RGS-like C2 domain 99.8 1.4E-18 3E-23 132.3 10.7 104 9-125 11-119 (119)
55 cd04038 C2_ArfGAP C2 domain pr 99.8 8.5E-18 1.8E-22 132.5 15.0 91 10-111 2-92 (145)
56 cd04030 C2C_KIAA1228 C2 domain 99.8 5.7E-18 1.2E-22 128.7 12.9 105 9-125 15-126 (127)
57 cd08691 C2_NEDL1-like C2 domai 99.8 1.8E-17 3.8E-22 129.6 15.6 121 11-140 2-136 (137)
58 cd08690 C2_Freud-1 C2 domain f 99.8 1.1E-17 2.4E-22 133.3 14.6 123 11-146 3-139 (155)
59 cd08521 C2A_SLP C2 domain firs 99.8 9E-18 2E-22 126.8 12.6 105 8-125 12-123 (123)
60 cd08383 C2A_RasGAP C2 domain ( 99.8 1.6E-17 3.5E-22 124.2 13.5 111 12-143 2-117 (117)
61 cd04031 C2A_RIM1alpha C2 domai 99.8 1E-17 2.2E-22 126.9 12.2 106 6-125 12-124 (125)
62 cd04013 C2_SynGAP_like C2 doma 99.8 2.9E-17 6.2E-22 129.8 15.1 122 9-146 10-141 (146)
63 cd08680 C2_Kibra C2 domain fou 99.8 9.8E-18 2.1E-22 128.9 11.6 105 9-125 13-124 (124)
64 cd08386 C2A_Synaptotagmin-7 C2 99.8 2.7E-17 5.9E-22 124.8 13.7 106 8-126 14-124 (125)
65 cd08388 C2A_Synaptotagmin-4-11 99.8 3E-17 6.5E-22 126.3 14.1 96 8-111 14-115 (128)
66 cd08389 C2A_Synaptotagmin-14_1 99.8 1.6E-17 3.5E-22 127.1 12.0 105 8-126 14-123 (124)
67 cd08390 C2A_Synaptotagmin-15-1 99.7 3.3E-17 7.2E-22 123.8 12.7 106 8-126 12-122 (123)
68 cd04018 C2C_Ferlin C2 domain t 99.7 2.3E-17 5.1E-22 130.9 12.4 106 11-127 1-125 (151)
69 cd04052 C2B_Tricalbin-like C2 99.7 2.9E-17 6.2E-22 123.1 11.4 102 26-145 8-110 (111)
70 cd04032 C2_Perforin C2 domain 99.7 2.6E-17 5.6E-22 127.1 11.5 91 8-109 26-118 (127)
71 cd04009 C2B_Munc13-like C2 dom 99.7 4.9E-17 1.1E-21 125.5 10.8 95 9-111 15-119 (133)
72 cd08675 C2B_RasGAP C2 domain s 99.7 8.8E-17 1.9E-21 125.2 11.7 104 12-129 1-122 (137)
73 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.7 8.5E-17 1.8E-21 128.8 11.8 109 6-127 23-138 (162)
74 cd00276 C2B_Synaptotagmin C2 d 99.7 2.1E-17 4.5E-22 126.3 7.4 111 6-131 10-126 (134)
75 cd08676 C2A_Munc13-like C2 dom 99.7 1.3E-16 2.8E-21 126.9 12.0 105 3-125 21-153 (153)
76 cd04026 C2_PKC_alpha_gamma C2 99.7 1.8E-16 3.8E-21 121.5 11.2 105 10-128 13-122 (131)
77 cd08404 C2B_Synaptotagmin-4 C2 99.7 7.6E-17 1.6E-21 124.7 8.9 113 8-135 13-131 (136)
78 cd08384 C2B_Rabphilin_Doc2 C2 99.7 2E-16 4.3E-21 121.5 10.8 109 9-132 12-126 (133)
79 cd04037 C2E_Ferlin C2 domain f 99.7 4.3E-16 9.4E-21 119.0 11.8 91 12-110 2-93 (124)
80 cd04035 C2A_Rabphilin_Doc2 C2 99.7 6.8E-16 1.5E-20 117.0 12.7 96 7-111 12-114 (123)
81 cd08407 C2B_Synaptotagmin-13 C 99.7 3E-16 6.6E-21 122.8 10.8 92 8-107 13-112 (138)
82 cd08402 C2B_Synaptotagmin-1 C2 99.7 2.5E-16 5.5E-21 121.6 10.1 93 8-108 13-111 (136)
83 cd08406 C2B_Synaptotagmin-12 C 99.7 3.4E-16 7.3E-21 122.1 10.8 91 9-107 14-110 (136)
84 cd08405 C2B_Synaptotagmin-7 C2 99.7 3.3E-16 7.1E-21 121.0 10.7 93 8-108 13-111 (136)
85 cd08403 C2B_Synaptotagmin-3-5- 99.7 4.1E-16 8.9E-21 120.2 11.0 94 5-106 9-108 (134)
86 PLN03200 cellulose synthase-in 99.7 1.8E-16 3.9E-21 163.2 10.3 117 9-144 1979-2100(2102)
87 cd08410 C2B_Synaptotagmin-17 C 99.7 8.6E-16 1.9E-20 119.0 11.3 112 7-132 11-128 (135)
88 cd08686 C2_ABR C2 domain in th 99.7 9.6E-16 2.1E-20 116.9 10.9 109 12-143 1-118 (118)
89 cd08409 C2B_Synaptotagmin-15 C 99.7 1.2E-15 2.5E-20 118.7 11.2 94 9-111 14-113 (137)
90 cd08408 C2B_Synaptotagmin-14_1 99.7 1.2E-15 2.6E-20 119.0 11.3 110 8-131 13-129 (138)
91 cd04048 C2A_Copine C2 domain f 99.6 1.8E-15 4E-20 114.4 11.5 103 15-127 5-114 (120)
92 PLN02270 phospholipase D alpha 99.6 1.1E-14 2.4E-19 139.6 16.8 124 9-147 7-151 (808)
93 cd08692 C2B_Tac2-N C2 domain s 99.6 4.4E-15 9.6E-20 115.8 10.8 94 8-108 12-110 (135)
94 PF00168 C2: C2 domain; Inter 99.6 5E-15 1.1E-19 103.1 10.0 83 12-102 1-85 (85)
95 KOG1028 Ca2+-dependent phospho 99.6 4.6E-14 1E-18 128.5 14.3 123 9-145 166-295 (421)
96 cd04047 C2B_Copine C2 domain s 99.6 3.3E-14 7.1E-19 105.7 10.3 90 13-111 3-101 (110)
97 COG5038 Ca2+-dependent lipid-b 99.6 3E-14 6.5E-19 139.3 12.3 130 1-145 426-558 (1227)
98 smart00239 C2 Protein kinase C 99.5 1.2E-13 2.7E-18 97.7 11.5 93 11-112 1-96 (101)
99 PLN02223 phosphoinositide phos 99.5 2.3E-13 5E-18 126.1 14.2 117 9-141 408-533 (537)
100 cd00030 C2 C2 domain. The C2 d 99.5 3.1E-13 6.8E-18 94.7 11.2 89 12-109 1-90 (102)
101 KOG1011 Neurotransmitter relea 99.5 5.5E-14 1.2E-18 131.2 8.1 138 1-149 286-431 (1283)
102 KOG0696 Serine/threonine prote 99.5 2.3E-14 5E-19 129.1 3.8 106 8-127 178-288 (683)
103 PLN02952 phosphoinositide phos 99.5 7.8E-13 1.7E-17 124.4 14.1 119 9-144 469-597 (599)
104 PLN02228 Phosphoinositide phos 99.4 7.9E-12 1.7E-16 117.0 14.6 121 10-147 431-564 (567)
105 PLN02230 phosphoinositide phos 99.4 5.3E-12 1.1E-16 118.7 12.2 108 9-132 468-585 (598)
106 PLN02222 phosphoinositide phos 99.3 1.9E-11 4.2E-16 114.7 13.9 107 10-132 452-568 (581)
107 cd08374 C2F_Ferlin C2 domain s 99.3 1.6E-11 3.4E-16 95.7 11.0 94 11-112 1-125 (133)
108 cd08689 C2_fungal_Pkc1p C2 dom 99.3 5.5E-12 1.2E-16 94.3 7.4 86 12-111 1-89 (109)
109 KOG2059 Ras GTPase-activating 99.3 6.7E-12 1.5E-16 118.0 9.6 123 10-148 5-129 (800)
110 KOG0169 Phosphoinositide-speci 99.3 1.2E-11 2.5E-16 117.3 11.3 116 11-141 617-742 (746)
111 PLN02352 phospholipase D epsil 99.3 4.3E-11 9.2E-16 114.8 14.7 126 1-148 1-134 (758)
112 COG5038 Ca2+-dependent lipid-b 99.2 2.7E-11 5.8E-16 118.9 9.6 123 9-146 1039-1163(1227)
113 KOG1028 Ca2+-dependent phospho 99.1 3.2E-10 7E-15 103.4 10.1 91 9-107 297-393 (421)
114 KOG1264 Phospholipase C [Lipid 99.0 3.9E-09 8.4E-14 101.0 11.0 103 9-127 1064-1171(1267)
115 KOG1031 Predicted Ca2+-depende 98.9 4.2E-09 9.1E-14 98.1 9.8 126 8-144 1-136 (1169)
116 KOG1328 Synaptic vesicle prote 98.7 3.5E-09 7.5E-14 100.4 1.9 94 10-111 947-1050(1103)
117 KOG1328 Synaptic vesicle prote 98.5 2.7E-08 5.7E-13 94.5 1.7 131 10-148 114-305 (1103)
118 KOG0905 Phosphoinositide 3-kin 98.3 6.3E-07 1.4E-11 88.8 4.9 106 9-127 1523-1635(1639)
119 KOG2059 Ras GTPase-activating 98.2 3E-06 6.5E-11 80.5 7.2 118 15-146 136-278 (800)
120 KOG1265 Phospholipase C [Lipid 98.2 5.9E-06 1.3E-10 80.2 9.2 112 10-145 703-826 (1189)
121 cd08683 C2_C2cd3 C2 domain fou 98.1 4.1E-06 8.9E-11 65.0 4.7 109 12-125 1-143 (143)
122 KOG3837 Uncharacterized conser 98.0 5.4E-06 1.2E-10 74.9 4.4 126 8-146 365-505 (523)
123 PLN02964 phosphatidylserine de 97.9 2E-05 4.2E-10 75.5 6.5 86 10-112 54-141 (644)
124 KOG1011 Neurotransmitter relea 97.7 0.00014 3.1E-09 69.1 8.4 116 10-139 1125-1250(1283)
125 PF10358 NT-C2: N-terminal C2 97.7 0.0034 7.4E-08 48.3 14.9 119 11-146 8-137 (143)
126 PF11618 DUF3250: Protein of u 97.7 0.00059 1.3E-08 51.3 9.8 97 34-145 2-106 (107)
127 KOG1013 Synaptic vesicle prote 97.7 6.4E-06 1.4E-10 72.5 -1.0 96 8-111 91-193 (362)
128 KOG1326 Membrane-associated pr 97.6 4E-05 8.6E-10 75.3 2.7 90 10-107 613-703 (1105)
129 KOG1013 Synaptic vesicle prote 97.4 0.00035 7.6E-09 61.7 5.8 86 9-102 232-323 (362)
130 cd08684 C2A_Tac2-N C2 domain f 97.4 0.00028 6E-09 51.6 4.2 87 13-110 2-94 (103)
131 KOG2060 Rab3 effector RIM1 and 97.3 0.00024 5.1E-09 63.7 3.7 109 9-129 268-381 (405)
132 PF12416 DUF3668: Cep120 prote 97.2 0.0085 1.8E-07 53.6 13.0 121 12-148 2-136 (340)
133 cd08693 C2_PI3K_class_I_beta_d 97.2 0.0038 8.3E-08 50.6 9.4 71 10-83 8-86 (173)
134 cd08398 C2_PI3K_class_I_alpha 97.2 0.0037 8.1E-08 50.0 9.1 90 10-107 8-105 (158)
135 PF15627 CEP76-C2: CEP76 C2 do 96.8 0.044 9.6E-07 43.8 12.3 127 6-146 5-152 (156)
136 cd08380 C2_PI3K_like C2 domain 96.8 0.016 3.5E-07 45.7 9.7 92 10-108 8-107 (156)
137 cd08687 C2_PKN-like C2 domain 96.8 0.017 3.6E-07 42.4 8.8 66 29-108 7-72 (98)
138 cd04012 C2A_PI3K_class_II C2 d 96.5 0.012 2.6E-07 47.4 7.4 77 8-84 6-93 (171)
139 KOG1452 Predicted Rho GTPase-a 96.2 0.011 2.3E-07 52.4 6.1 116 9-146 50-169 (442)
140 PF14429 DOCK-C2: C2 domain in 96.2 0.045 9.8E-07 44.3 9.2 59 44-107 59-120 (184)
141 cd08694 C2_Dock-A C2 domains f 96.1 0.23 4.9E-06 41.2 12.9 59 44-106 53-114 (196)
142 KOG1327 Copine [Signal transdu 96.1 0.014 3E-07 54.8 6.1 84 17-109 143-235 (529)
143 cd08399 C2_PI3K_class_I_gamma 96.0 0.076 1.7E-06 43.3 9.7 71 10-82 10-87 (178)
144 cd08695 C2_Dock-B C2 domains f 95.9 0.2 4.4E-06 41.3 11.8 58 44-107 53-113 (189)
145 KOG1326 Membrane-associated pr 95.9 0.002 4.3E-08 63.8 -0.2 113 12-141 208-330 (1105)
146 cd08397 C2_PI3K_class_III C2 d 95.6 0.047 1E-06 43.7 6.9 71 29-107 28-106 (159)
147 PF00792 PI3K_C2: Phosphoinosi 95.3 0.22 4.8E-06 38.5 9.6 70 32-108 3-85 (142)
148 cd08679 C2_DOCK180_related C2 94.9 0.13 2.9E-06 41.5 7.5 57 46-107 55-115 (178)
149 cd08696 C2_Dock-C C2 domains f 94.5 0.18 3.8E-06 41.3 7.2 60 44-107 54-118 (179)
150 smart00142 PI3K_C2 Phosphoinos 93.8 0.39 8.5E-06 35.1 7.4 73 10-83 11-91 (100)
151 cd08697 C2_Dock-D C2 domains f 93.2 0.5 1.1E-05 38.8 7.7 63 44-107 56-123 (185)
152 PF15625 CC2D2AN-C2: CC2D2A N- 93.0 0.66 1.4E-05 37.2 8.0 74 29-111 35-109 (168)
153 KOG1329 Phospholipase D1 [Lipi 92.1 0.49 1.1E-05 47.0 7.1 89 31-132 138-226 (887)
154 PTZ00447 apical membrane antig 88.5 8.9 0.00019 34.8 11.3 97 30-141 73-171 (508)
155 PF06219 DUF1005: Protein of u 88.2 16 0.00034 33.9 12.9 115 30-148 35-171 (460)
156 PF14924 DUF4497: Protein of u 88.2 2.3 4.9E-05 31.8 6.5 68 73-145 29-105 (112)
157 PF07162 B9-C2: Ciliary basal 85.0 15 0.00032 29.3 10.1 82 13-107 5-103 (168)
158 KOG3543 Ca2+-dependent activat 82.9 9 0.0002 37.4 9.0 117 11-146 342-461 (1218)
159 PF14186 Aida_C2: Cytoskeletal 80.8 6.1 0.00013 31.3 6.1 93 10-111 13-115 (147)
160 KOG1327 Copine [Signal transdu 80.7 4.9 0.00011 38.1 6.4 60 46-111 43-105 (529)
161 KOG2419 Phosphatidylserine dec 69.7 0.69 1.5E-05 44.8 -2.2 56 11-70 281-340 (975)
162 KOG4269 Rac GTPase-activating 61.0 3.6 7.7E-05 41.3 0.7 70 5-81 754-826 (1112)
163 PF14909 SPATA6: Spermatogenes 57.1 94 0.002 24.4 9.5 86 11-111 3-102 (140)
164 KOG0694 Serine/threonine prote 52.8 9.7 0.00021 37.2 2.2 52 30-84 27-78 (694)
165 PF04234 CopC: CopC domain; I 51.5 72 0.0016 22.8 6.2 59 73-141 33-97 (97)
166 PF10517 DM13: Electron transf 41.0 1.3E+02 0.0029 21.8 6.4 87 4-103 9-107 (108)
167 KOG0904 Phosphatidylinositol 3 38.6 63 0.0014 32.9 5.3 70 10-82 343-421 (1076)
168 KOG4027 Uncharacterized conser 35.8 1E+02 0.0023 25.0 5.3 43 59-108 65-111 (187)
169 cd05137 RasGAP_CLA2_BUD2 CLA2/ 35.5 31 0.00068 31.6 2.6 40 97-141 1-42 (395)
170 PF12416 DUF3668: Cep120 prote 35.2 3.4E+02 0.0073 24.4 12.4 104 10-128 192-317 (340)
171 PF06196 DUF997: Protein of un 33.8 7.1 0.00015 27.7 -1.5 21 174-194 21-46 (80)
172 PF08151 FerI: FerI (NUC094) d 32.2 1.7E+02 0.0036 20.3 5.2 36 114-150 10-48 (72)
173 KOG0905 Phosphoinositide 3-kin 32.1 57 0.0012 34.3 4.0 99 10-109 635-750 (1639)
174 smart00686 DM13 Domain present 31.1 2.2E+02 0.0048 21.1 6.2 82 14-105 11-103 (108)
175 PF12682 Flavodoxin_4: Flavodo 29.2 27 0.00058 27.5 1.0 11 186-196 77-87 (156)
176 PRK06934 flavodoxin; Provision 23.9 36 0.00077 28.7 0.8 13 184-196 131-143 (221)
177 PF14472 DUF4429: Domain of un 22.8 99 0.0022 22.2 2.9 35 95-141 21-55 (94)
No 1
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.94 E-value=4.7e-26 Score=174.49 Aligned_cols=117 Identities=17% Similarity=0.325 Sum_probs=101.3
Q ss_pred eEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEEeCCCCCCCC
Q 040360 10 RTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQCKSKSSSSG 89 (198)
Q Consensus 10 ~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~~~~~~~~~g 89 (198)
|+|+|+|++|++|+..+ ++++||||+|+++. ++++|+++.+++.||+|||+|.|.++.....|.|+|||++. ++
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~--~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~---~~ 75 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRVGH--AVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERA---FT 75 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCCCCceEEEEECC--EEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCC---Cc
Confidence 78999999999998766 78999999999988 88899999887799999999999998766789999999998 67
Q ss_pred CCCCCCceeEEEEEeCc-cccCCCCCCCceEeEEEEeeCCCCC-ccEEEEEEEE
Q 040360 90 NNNNHNKIVGFARIPVS-DFIGGYAPENYLHFLSYRLRNAKGD-KNGIINVSVR 141 (198)
Q Consensus 90 ~~~~~d~~IG~a~IpL~-~l~~~~~~~~~~~~~sy~L~~~~Gk-~~G~I~lsi~ 141 (198)
+ |++||++.|+|. .+..+.. ...||+|...+|+ ..|.|||+++
T Consensus 76 ~----dd~iG~~~i~l~~~~~~g~~-----~~~W~~L~~~~~~~~~g~i~l~l~ 120 (121)
T cd04016 76 M----DERIAWTHITIPESVFNGET-----LDDWYSLSGKQGEDKEGMINLVFS 120 (121)
T ss_pred C----CceEEEEEEECchhccCCCC-----ccccEeCcCccCCCCceEEEEEEe
Confidence 3 899999999997 4665532 3469999876664 6899999987
No 2
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.93 E-value=1.4e-25 Score=170.65 Aligned_cols=120 Identities=36% Similarity=0.643 Sum_probs=104.5
Q ss_pred EEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCC-----CcEEEEEEEeCCCC
Q 040360 11 TIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMH-----ARFITVQVQCKSKS 85 (198)
Q Consensus 11 ~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~-----~~~L~~eV~~~~~~ 85 (198)
+|+|+|++|++|+..+..+++||||+|++++ .++++|+++++++.||.|||+|.|.++.. ...|.|+|||++.
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~-~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~- 78 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDP-SHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP- 78 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECC-CcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC-
Confidence 5899999999999877788999999999987 57789999877679999999999999765 5799999999886
Q ss_pred CCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCccEEEEE
Q 040360 86 SSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDKNGIINV 138 (198)
Q Consensus 86 ~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~~G~I~l 138 (198)
+++ |++||++.|+|.++..+...+...+..||+|++++|+++|+|||
T Consensus 79 --~~~----~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~~~ 125 (125)
T cd04051 79 --SLG----DKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQGVLNF 125 (125)
T ss_pred --CCC----CCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcCeEEeC
Confidence 553 89999999999999987633324578899999999999999986
No 3
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.91 E-value=1.3e-23 Score=158.17 Aligned_cols=117 Identities=24% Similarity=0.362 Sum_probs=100.5
Q ss_pred eEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecC-CCcEEEEEEEeCCCCCCC
Q 040360 10 RTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPM-HARFITVQVQCKSKSSSS 88 (198)
Q Consensus 10 ~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~-~~~~L~~eV~~~~~~~~~ 88 (198)
|+|+|+|++|++|+..+..+++||||+|.+++ .+.+|+++.+++.||.|||.|.|.++. ....|.|+|||++. .
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~--~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~---~ 75 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGG--VTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDK---R 75 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECC--CccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCC---C
Confidence 58999999999998877888999999999998 778999887656899999999999976 35789999999886 5
Q ss_pred CCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCccEEEEEEEEEe
Q 040360 89 GNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDKNGIINVSVRSL 143 (198)
Q Consensus 89 g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~~G~I~lsi~~f 143 (198)
+ |++||++.|+|.++..+.. ...||+|.. +|+..|+|+|++. |
T Consensus 76 ~-----~~~iG~~~~~l~~~~~~~~-----~~~w~~L~~-~~~~~G~i~l~l~-f 118 (118)
T cd08681 76 K-----PDLIGDTEVDLSPALKEGE-----FDDWYELTL-KGRYAGEVYLELT-F 118 (118)
T ss_pred C-----CcceEEEEEecHHHhhcCC-----CCCcEEecc-CCcEeeEEEEEEE-C
Confidence 5 8999999999999876532 236899875 5689999999998 5
No 4
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.91 E-value=2.2e-23 Score=165.07 Aligned_cols=136 Identities=18% Similarity=0.261 Sum_probs=111.9
Q ss_pred EEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecC-CCcEEEEEEEeCCCCCCCC
Q 040360 11 TIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPM-HARFITVQVQCKSKSSSSG 89 (198)
Q Consensus 11 ~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~-~~~~L~~eV~~~~~~~~~g 89 (198)
.|.|+|++|++|...+.++++||||+|.+++ ++++|++..+++.||+|||+|.|.++. ..+.|.|+|++++. .+
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~--~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~---~~ 75 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGN--QVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVG---PN 75 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECC--EEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecC---CC
Confidence 3899999999998888889999999999998 888999987756999999999999965 34689999999886 54
Q ss_pred CCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCC--------CccEEEEEEEEEeeeCCccCCCCCCcc
Q 040360 90 NNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKG--------DKNGIINVSVRSLKVAADQHASSSNYL 157 (198)
Q Consensus 90 ~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~G--------k~~G~I~lsi~~f~~~~~~~~~~~~~~ 157 (198)
+|++||++.|||.++..+. ........||+|.+..| +.+|+|+|.+. |.+..+.-..++-|.
T Consensus 76 ----~dd~lG~v~i~L~~l~~~~-~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~-~~~~~~~~~~~~~~~ 145 (150)
T cd04019 76 ----KDEPLGRAVIPLNDIERRV-DDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLC-LDGGYHVLDESTHYS 145 (150)
T ss_pred ----CCCeEEEEEEEHHHCcccC-CCCccCCceEECcCCCCcccccccCcccccEEEEEE-ecCcceEeecccccc
Confidence 2899999999999997642 12223467999998654 57899999999 998877666665554
No 5
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.90 E-value=4.2e-23 Score=157.66 Aligned_cols=117 Identities=24% Similarity=0.407 Sum_probs=98.1
Q ss_pred EEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecC------CCcEEEEEEEeCCCC
Q 040360 12 IELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPM------HARFITVQVQCKSKS 85 (198)
Q Consensus 12 LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~------~~~~L~~eV~~~~~~ 85 (198)
|+|+|++|++|+..+..+.+||||+|.++. ++++|++++++ .||+|||+|.|.++. ....|.|+|||++.
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~--~~~kT~v~~~t-~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~- 76 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGK--EKYSTSVKEKT-TSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNL- 76 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECC--eeeeeeeecCC-CCCEeCceEEEEecCcccCCCcCCEEEEEEEEccc-
Confidence 579999999998877788999999999987 78899999987 999999999999976 35789999999987
Q ss_pred CCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCC---CccEEEEEEEE
Q 040360 86 SSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKG---DKNGIINVSVR 141 (198)
Q Consensus 86 ~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~G---k~~G~I~lsi~ 141 (198)
+++ |++||++.|+|+++.... +.....||+|....+ +.+|+|+|+++
T Consensus 77 --~~~----d~~iG~~~i~l~~l~~~~---~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 77 --LGL----DKFLGQVSIPLNDLDEDK---GRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred --cCC----CceeEEEEEEHHHhhccC---CCcccEEEECcCCCCCCccccceEEEEeC
Confidence 663 899999999999997321 112457999986443 46899999873
No 6
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.90 E-value=9.8e-23 Score=157.17 Aligned_cols=117 Identities=22% Similarity=0.310 Sum_probs=96.5
Q ss_pred EEEEEEEEeeC---CCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEEeCCCCCC
Q 040360 11 TIELTVLSGED---LRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQCKSKSSS 87 (198)
Q Consensus 11 ~LeVtVlsA~~---L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~~~~~~~~ 87 (198)
.|+|+|++|++ |+..+..+.+||||+|++++ ++.+|++++++ .||+|||+|.|.+......|.|+|||++.
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~--~~~rTk~~~~~-~nP~WnE~f~f~v~~~~~~l~v~V~d~d~--- 74 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGP--KWVRTRTVEDS-SNPRWNEQYTWPVYDPCTVLTVGVFDNSQ--- 74 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECC--EEeEcCcccCC-CCCcceeEEEEEecCCCCEEEEEEEECCC---
Confidence 38999999999 77778889999999999988 88999999886 99999999999997766799999999876
Q ss_pred CC--CCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCC---CCccEEEEE
Q 040360 88 SG--NNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAK---GDKNGIINV 138 (198)
Q Consensus 88 ~g--~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~---Gk~~G~I~l 138 (198)
.+ ...+.|++||++.|+|+++..+. ....||+|.+.+ ++..|.|++
T Consensus 75 ~~~~~~~~~dd~lG~~~i~l~~l~~~~-----~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 75 SHWKEAVQPDVLIGKVRIRLSTLEDDR-----VYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred ccccccCCCCceEEEEEEEHHHccCCC-----EEeeEEEeEeCCCCCccCCcEEEe
Confidence 41 00002999999999999998654 245799999754 457788875
No 7
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.89 E-value=2.5e-22 Score=152.22 Aligned_cols=118 Identities=14% Similarity=0.224 Sum_probs=102.3
Q ss_pred EEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEEeCCCCCCCCCC
Q 040360 12 IELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQCKSKSSSSGNN 91 (198)
Q Consensus 12 LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~~~~~~~~~g~~ 91 (198)
|.|+|++|++|...+..+..||||++.+++ ...++|++.+++ .||+|||+|.|.+......|.|+|||++. .++
T Consensus 2 L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~-~~~~kT~~~~~t-~nP~Wne~f~f~v~~~~~~l~~~v~D~d~---~~~- 75 (121)
T cd04042 2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGG-KTVYKSKTIYKN-LNPVWDEKFTLPIEDVTQPLYIKVFDYDR---GLT- 75 (121)
T ss_pred eEEEEEEeeCCCCcCCCCCCCCeEEEEECC-EEEEEeeeccCC-CCCccceeEEEEecCCCCeEEEEEEeCCC---CCC-
Confidence 899999999998777788999999999987 567899998876 99999999999997656799999999987 653
Q ss_pred CCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCC-CccEEEEEEEEEee
Q 040360 92 NNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKG-DKNGIINVSVRSLK 144 (198)
Q Consensus 92 ~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~G-k~~G~I~lsi~~f~ 144 (198)
|++||.+.++|.++..+.. ...+|+|.+..+ +..|+|+|.++ |.
T Consensus 76 ---~~~iG~~~~~l~~l~~~~~-----~~~~~~L~~~~~~~~~G~l~l~~~-~~ 120 (121)
T cd04042 76 ---DDFMGSAFVDLSTLELNKP-----TEVKLKLEDPNSDEDLGYISLVVT-LT 120 (121)
T ss_pred ---CcceEEEEEEHHHcCCCCC-----eEEEEECCCCCCccCceEEEEEEE-EC
Confidence 8999999999999986532 357999987665 68999999999 75
No 8
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.89 E-value=3.9e-22 Score=152.48 Aligned_cols=120 Identities=22% Similarity=0.302 Sum_probs=99.1
Q ss_pred EEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCC----CcEEEEEEEeCCCCC
Q 040360 11 TIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMH----ARFITVQVQCKSKSS 86 (198)
Q Consensus 11 ~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~----~~~L~~eV~~~~~~~ 86 (198)
+|.|+|++|++|...+..+.+||||+|.+++ ++++|++.+++ .||.|||+|.|.+... ...|.|+|||++.
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~--~~~rT~v~~~t-~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~-- 75 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDG--QKKRTRTKPKD-LNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRR-- 75 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECC--EEecceeEcCC-CCCccceEEEEEccCHHHccCCeEEEEEeeCCC--
Confidence 4899999999998777778899999999998 78899999876 9999999999999753 2579999999876
Q ss_pred CCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCC--CCCccEEEEEEEEEee
Q 040360 87 SSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNA--KGDKNGIINVSVRSLK 144 (198)
Q Consensus 87 ~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~--~Gk~~G~I~lsi~~f~ 144 (198)
++. ++++||++.|+|+++... +.....||+|.++ .++.+|+|+|++. |.
T Consensus 76 -~~~---~d~~lG~v~i~l~~l~~~----~~~~~~w~~L~~~~~~~~~~G~l~l~~~-~~ 126 (127)
T cd04022 76 -SGR---RRSFLGRVRISGTSFVPP----SEAVVQRYPLEKRGLFSRVRGEIGLKVY-IT 126 (127)
T ss_pred -CcC---CCCeeeEEEEcHHHcCCC----CCccceEeEeeeCCCCCCccEEEEEEEE-Ec
Confidence 420 189999999999999732 1224579999875 3468999999998 75
No 9
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.89 E-value=6.3e-22 Score=157.79 Aligned_cols=120 Identities=23% Similarity=0.342 Sum_probs=101.3
Q ss_pred ceEEEEEEEEeeCCCCCC------------------------------CCCcCCcEEEEEECCCCcEEEeeeecCCCCCC
Q 040360 9 YRTIELTVLSGEDLRIDR------------------------------RLIKKNAFAIVQTDTSFDYCTTKVDESGGSHP 58 (198)
Q Consensus 9 ~~~LeVtVlsA~~L~~~~------------------------------~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP 58 (198)
.|+|+|+|++|++|+..+ ..++.||||+|++++ .+..+|++++++ .||
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~-~~~~rT~v~~~~-~nP 83 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAG-ARVARTRVIENS-ENP 83 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECC-eEeeEEEEeCCC-CCC
Confidence 489999999999997644 346689999999997 445699999886 999
Q ss_pred eeeeEEEEEecCCCcEEEEEEEeCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCC---ccEE
Q 040360 59 SWNEKLVIELPMHARFITVQVQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGD---KNGI 135 (198)
Q Consensus 59 ~WNE~f~f~v~~~~~~L~~eV~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk---~~G~ 135 (198)
+|||+|.|.+....+.|.|+|+|++. ++ +++||.+.|||+++..+.. ...||+|.+..|+ ..|.
T Consensus 84 ~WnE~F~~~~~~~~~~l~~~V~d~d~---~~-----~~~IG~~~i~l~~l~~g~~-----~~~w~~L~~~~~~~~~~~~~ 150 (158)
T cd04015 84 VWNESFHIYCAHYASHVEFTVKDNDV---VG-----AQLIGRAYIPVEDLLSGEP-----VEGWLPILDSNGKPPKPGAK 150 (158)
T ss_pred ccceEEEEEccCCCCEEEEEEEeCCC---cC-----CcEEEEEEEEhHHccCCCC-----cceEEECcCCCCCCCCCCCE
Confidence 99999999998767789999999887 67 7899999999999987542 3479999987665 4679
Q ss_pred EEEEEEEee
Q 040360 136 INVSVRSLK 144 (198)
Q Consensus 136 I~lsi~~f~ 144 (198)
|+|+++ |.
T Consensus 151 l~v~~~-f~ 158 (158)
T cd04015 151 IRVSLQ-FT 158 (158)
T ss_pred EEEEEE-EC
Confidence 999999 73
No 10
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.89 E-value=4.1e-22 Score=152.05 Aligned_cols=117 Identities=21% Similarity=0.288 Sum_probs=99.4
Q ss_pred EEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecC-CCcEEEEEEEeCCCCCCCCC
Q 040360 12 IELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPM-HARFITVQVQCKSKSSSSGN 90 (198)
Q Consensus 12 LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~-~~~~L~~eV~~~~~~~~~g~ 90 (198)
|.|+|++|++|+.. ..||||+|.++. .+.+|++.+++ .||+|||+|.|.+.. ....|.|+|+|++. .+
T Consensus 2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~--~~~kT~v~~~t-~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~---~~- 70 (121)
T cd08378 2 LYVRVVKARGLPAN----SNDPVVEVKLGN--YKGSTKAIERT-SNPEWNQVFAFSKDRLQGSTLEVSVWDKDK---AK- 70 (121)
T ss_pred EEEEEEEecCCCcc----cCCCEEEEEECC--ccccccccCCC-CCCccceEEEEEcCCCcCCEEEEEEEeCCC---Cc-
Confidence 78999999999754 689999999987 78899999886 899999999999865 56789999999987 55
Q ss_pred CCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCC-CccEEEEEEEEEee
Q 040360 91 NNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKG-DKNGIINVSVRSLK 144 (198)
Q Consensus 91 ~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~G-k~~G~I~lsi~~f~ 144 (198)
+++||.+.|+|+++.....++......||.|.+..+ +.+|+|+|+++ |.
T Consensus 71 ----~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~-~~ 120 (121)
T cd08378 71 ----DDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVW-FG 120 (121)
T ss_pred ----CceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEE-ec
Confidence 899999999999997654333334567999988654 78999999999 85
No 11
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.89 E-value=6.6e-22 Score=151.74 Aligned_cols=124 Identities=17% Similarity=0.296 Sum_probs=102.5
Q ss_pred EEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC-----CcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEEeCCCC
Q 040360 11 TIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS-----FDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQCKSKS 85 (198)
Q Consensus 11 ~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~-----~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~~~~~~ 85 (198)
+|.|+|++|++|...+..+..||||+|.+.+. ..+++|++.+++ .||.|||+|.|.+......|.|+|+|++.
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t-~nP~Wne~f~f~~~~~~~~l~~~v~d~~~- 78 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKT-LNPKWNEEFFFRVNPREHRLLFEVFDENR- 78 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCC-CCCcEeeEEEEEEcCCCCEEEEEEEECCC-
Confidence 48999999999987777789999999999862 125789998876 99999999999997766789999999987
Q ss_pred CCCCCCCCCCceeEEEEEeCccccCCCCCC-CceEeEEEEeeCC--CCCccEEEEEEEEEe
Q 040360 86 SSSGNNNNHNKIVGFARIPVSDFIGGYAPE-NYLHFLSYRLRNA--KGDKNGIINVSVRSL 143 (198)
Q Consensus 86 ~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~-~~~~~~sy~L~~~--~Gk~~G~I~lsi~~f 143 (198)
++ ++++||.+.|++.++..+...+ ......||+|... .++..|+|+|++. |
T Consensus 79 --~~----~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~-~ 132 (133)
T cd04033 79 --LT----RDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMA-Y 132 (133)
T ss_pred --CC----CCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEe-e
Confidence 66 3899999999999998764221 2235679999864 4678999999998 6
No 12
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.89 E-value=1e-21 Score=152.97 Aligned_cols=127 Identities=17% Similarity=0.216 Sum_probs=103.8
Q ss_pred CCCCCcceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecC-CCcEEEEEEEe
Q 040360 3 EKSSSGYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPM-HARFITVQVQC 81 (198)
Q Consensus 3 ~~~~m~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~-~~~~L~~eV~~ 81 (198)
++++...|.|.|+|++|++|+..+..+.+||||++.++. +.++|++++++ .||.|||+|.|.+.. ....|.|+|||
T Consensus 8 ~~~~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~--~~~kT~vi~~t-~nP~Wne~f~f~v~~~~~~~l~i~V~D 84 (136)
T cd08375 8 SQRASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGS--QEHKTKVVSDT-LNPKWNSSMQFFVKDLEQDVLCITVFD 84 (136)
T ss_pred ccCCCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECC--EeeeccccCCC-CCCccCceEEEEecCccCCEEEEEEEE
Confidence 466778899999999999998877788999999999987 78999999986 999999999999965 34689999999
Q ss_pred CCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCccEEEEEEEEEe
Q 040360 82 KSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDKNGIINVSVRSL 143 (198)
Q Consensus 82 ~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~~G~I~lsi~~f 143 (198)
++. +++ |++||.+.|+|.++..........-..+..| +++.+|+|+|++. |
T Consensus 85 ~d~---~~~----d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~---~~~~~g~i~l~~~-~ 135 (136)
T cd08375 85 RDF---FSP----DDFLGRTEIRVADILKETKESKGPITKRLLL---HEVPTGEVVVKLD-L 135 (136)
T ss_pred CCC---CCC----CCeeEEEEEEHHHhccccccCCCcEEEEecc---ccccceeEEEEEE-e
Confidence 987 663 8999999999999987432222122233333 4778999999998 6
No 13
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.88 E-value=2.2e-21 Score=148.33 Aligned_cols=121 Identities=17% Similarity=0.295 Sum_probs=100.9
Q ss_pred EEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEEeCCCCCCCCCC
Q 040360 12 IELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQCKSKSSSSGNN 91 (198)
Q Consensus 12 LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~~~~~~~~~g~~ 91 (198)
|.|+|++|++|.. ..++.||||++.++...++++|++.+++ .||+|||.|.|.+......|.|+|||++. .+
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t-~nP~Wne~f~f~~~~~~~~l~~~v~d~~~---~~-- 72 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNT-SNPFWDEHFLFELSPNSKELLFEVYDNGK---KS-- 72 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecC-CCCccCceEEEEeCCCCCEEEEEEEECCC---CC--
Confidence 6799999999986 6689999999999742367899999986 99999999999997666789999999987 55
Q ss_pred CCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCC---CCCccEEEEEEEEEeeeCCc
Q 040360 92 NNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNA---KGDKNGIINVSVRSLKVAAD 148 (198)
Q Consensus 92 ~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~---~Gk~~G~I~lsi~~f~~~~~ 148 (198)
+|++||.+.|+|.++..+.. ...+|.|... +++..|+|++.+. |.++++
T Consensus 73 --~~~~lG~~~i~l~~l~~~~~-----~~~~~~L~~~~~~~~~~~G~l~l~~~-~~~~~~ 124 (126)
T cd08678 73 --DSKFLGLAIVPFDELRKNPS-----GRQIFPLQGRPYEGDSVSGSITVEFL-FMEPAE 124 (126)
T ss_pred --CCceEEEEEEeHHHhccCCc-----eeEEEEecCCCCCCCCcceEEEEEEE-Eecccc
Confidence 39999999999999987642 2358888764 2457999999999 876553
No 14
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.88 E-value=1.7e-21 Score=147.04 Aligned_cols=121 Identities=19% Similarity=0.249 Sum_probs=98.9
Q ss_pred eEEEEEEEEeeCCCCCC-CCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEEeCCCCCCC
Q 040360 10 RTIELTVLSGEDLRIDR-RLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQCKSKSSSS 88 (198)
Q Consensus 10 ~~LeVtVlsA~~L~~~~-~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~~~~~~~~~ 88 (198)
|.|+|+|++|++|+..+ ..+..||||+|+++.....++|++++++ .||.|||.|.|.+....+.|.|+|||++. .
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~-~~P~Wne~~~~~v~~~~~~l~~~v~d~~~---~ 77 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDT-SNPVWNETKYILVNSLTEPLNLTVYDFND---K 77 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCC-CCCcceEEEEEEeCCCCCEEEEEEEecCC---C
Confidence 78999999999998544 3456899999999862267899999875 99999999999998667899999999987 5
Q ss_pred CCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCccEEEEEEEEEee
Q 040360 89 GNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDKNGIINVSVRSLK 144 (198)
Q Consensus 89 g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~~G~I~lsi~~f~ 144 (198)
+ .|++||++.++|.++..+... ...++.|. .+|+.+|+|+|+++ |.
T Consensus 78 ~----~d~~iG~~~~~l~~l~~~~~~----~~~~~~~~-~~~k~~G~i~~~l~-~~ 123 (124)
T cd04044 78 R----KDKLIGTAEFDLSSLLQNPEQ----ENLTKNLL-RNGKPVGELNYDLR-FF 123 (124)
T ss_pred C----CCceeEEEEEEHHHhccCccc----cCcchhhh-cCCccceEEEEEEE-eC
Confidence 5 289999999999999876422 12344454 57889999999999 75
No 15
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.87 E-value=4e-21 Score=144.44 Aligned_cols=116 Identities=17% Similarity=0.238 Sum_probs=100.1
Q ss_pred eEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEEeCCCCCCCC
Q 040360 10 RTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQCKSKSSSSG 89 (198)
Q Consensus 10 ~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~~~~~~~~~g 89 (198)
|.|+|+|++|++|+..+..+.+||||+|.++. ..++|++.+++ .||.|||+|.|.+......|.|+|||++. .+
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~--~~~~T~~~~~t-~nP~W~e~f~~~~~~~~~~l~~~v~d~~~---~~ 74 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVN--ARLQTHTIYKT-LNPEWNKIFTFPIKDIHDVLEVTVYDEDK---DK 74 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECC--EeeecceecCC-cCCccCcEEEEEecCcCCEEEEEEEECCC---CC
Confidence 57999999999998777778899999999987 67899999886 99999999999997656899999999886 55
Q ss_pred CCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCC--CCccEEEEEEEEEe
Q 040360 90 NNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAK--GDKNGIINVSVRSL 143 (198)
Q Consensus 90 ~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~--Gk~~G~I~lsi~~f 143 (198)
+ +++||++.++|.++..+. ..||.|.+.. ++.+|+|.|++. |
T Consensus 75 ~----~~~iG~~~~~l~~~~~~~-------~~~~~l~~~~~~~~~~G~i~l~~~-~ 118 (119)
T cd08377 75 K----PEFLGKVAIPLLSIKNGE-------RKWYALKDKKLRTRAKGSILLEMD-V 118 (119)
T ss_pred C----CceeeEEEEEHHHCCCCC-------ceEEECcccCCCCceeeEEEEEEE-e
Confidence 3 899999999999997542 2599998754 458999999998 6
No 16
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.87 E-value=5.9e-21 Score=145.61 Aligned_cols=117 Identities=17% Similarity=0.275 Sum_probs=98.2
Q ss_pred EEEEEEEeeCCCCC-CCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEEeCCCCCCCCC
Q 040360 12 IELTVLSGEDLRID-RRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQCKSKSSSSGN 90 (198)
Q Consensus 12 LeVtVlsA~~L~~~-~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~~~~~~~~~g~ 90 (198)
|.|+|++|++|+.. ...+..||||.|.++. ...++|++.+++ .||.|||.|.|.++.....|.|+|||++. ++
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~-~~~~kT~v~~kt-~~P~WnE~F~f~v~~~~~~l~~~v~d~~~---~~- 75 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQ-EEVFRTKTVEKS-LCPFFGEDFYFEIPRTFRHLSFYIYDRDV---LR- 75 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECC-ccEEEeeEEECC-CCCccCCeEEEEcCCCCCEEEEEEEECCC---CC-
Confidence 78999999999864 3346789999999987 456899999886 99999999999998766899999999987 55
Q ss_pred CCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeC--CCCCccEEEEEEEEEe
Q 040360 91 NNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRN--AKGDKNGIINVSVRSL 143 (198)
Q Consensus 91 ~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~--~~Gk~~G~I~lsi~~f 143 (198)
+|++||.+.|+|+++..+.. ...||.|.. ..++..|+|||+++ |
T Consensus 76 ---~~~~iG~~~i~l~~l~~~~~-----~~~w~~L~~~~~~~~~~G~i~l~~~-~ 121 (121)
T cd08401 76 ---RDSVIGKVAIKKEDLHKYYG-----KDTWFPLQPVDADSEVQGKVHLELR-L 121 (121)
T ss_pred ---CCceEEEEEEEHHHccCCCC-----cEeeEEEEccCCCCcccEEEEEEEE-C
Confidence 38999999999999976432 357999985 34567999999998 5
No 17
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.86 E-value=1.3e-20 Score=144.26 Aligned_cols=117 Identities=17% Similarity=0.200 Sum_probs=98.8
Q ss_pred eEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEEeCCCCCCCC
Q 040360 10 RTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQCKSKSSSSG 89 (198)
Q Consensus 10 ~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~~~~~~~~~g 89 (198)
..|+|+|++|++|+..+.++..||||++.+++ ++++|++.+++ .||+|||.|.|.+......|.|+|||++. .+
T Consensus 3 ~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~--~~~kT~v~~~t-~nP~Wne~f~f~~~~~~~~l~i~V~d~~~---~~ 76 (126)
T cd04046 3 VVTQVHVHSAEGLSKQDSGGGADPYVIIKCEG--ESVRSPVQKDT-LSPEFDTQAIFYRKKPRSPIKIQVWNSNL---LC 76 (126)
T ss_pred EEEEEEEEeCcCCCCCCCCCCcCccEEEEECC--EEEEeCccCCC-CCCcccceEEEEecCCCCEEEEEEEECCC---CC
Confidence 57999999999998777788999999999988 78999999876 99999999999987767899999999887 66
Q ss_pred CCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEee----CCCCCccEEEEEEEEEeee
Q 040360 90 NNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLR----NAKGDKNGIINVSVRSLKV 145 (198)
Q Consensus 90 ~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~----~~~Gk~~G~I~lsi~~f~~ 145 (198)
|++||.+.+++.++.... ..+|+|. ..+++..|.|.|.+. +.+
T Consensus 77 -----d~~lG~~~~~l~~~~~~~-------~~~~~l~~~~~~~~~~~~G~i~~~~~-~~~ 123 (126)
T cd04046 77 -----DEFLGQATLSADPNDSQT-------LRTLPLRKRGRDAAGEVPGTISVKVT-SSD 123 (126)
T ss_pred -----CCceEEEEEecccCCCcC-------ceEEEcccCCCCCCCCCCCEEEEEEE-Ecc
Confidence 899999999999864321 1345553 356889999999998 654
No 18
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.86 E-value=1.5e-20 Score=144.06 Aligned_cols=118 Identities=20% Similarity=0.367 Sum_probs=95.2
Q ss_pred eEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCC-CcEEEEEEEeCCCCCCC
Q 040360 10 RTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMH-ARFITVQVQCKSKSSSS 88 (198)
Q Consensus 10 ~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~-~~~L~~eV~~~~~~~~~ 88 (198)
+.|+|+|++|+||+.. +..||||+|.+++ .+..+|++. + +.||.|||+|.|.+... ...|+|+|+|++. .
T Consensus 4 ~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~-~~~~kT~v~-~-~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~---~ 74 (126)
T cd08400 4 RSLQLNVLEAHKLPVK---HVPHPYCVISLNE-VKVARTKVR-E-GPNPVWSEEFVFDDLPPDVNSFTISLSNKAK---R 74 (126)
T ss_pred eEEEEEEEEeeCCCCC---CCCCeeEEEEECC-EeEEEeecC-C-CCCCccCCEEEEecCCCCcCEEEEEEEECCC---C
Confidence 5799999999999853 3689999999987 455789874 4 48999999999986443 3579999999887 5
Q ss_pred CCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCC---CCccEEEEEEEEEeeeC
Q 040360 89 GNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAK---GDKNGIINVSVRSLKVA 146 (198)
Q Consensus 89 g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~---Gk~~G~I~lsi~~f~~~ 146 (198)
+ +|++||++.|||.++..+.. ...||.|...+ .+..|+|+|+++ |.++
T Consensus 75 ~----~d~~iG~v~i~l~~l~~~~~-----~~~W~~L~~~~~~~~~~~G~i~l~l~-~~~~ 125 (126)
T cd08400 75 S----KDSEIAEVTVQLSKLQNGQE-----TDEWYPLSSASPLKGGEWGSLRIRAR-YSHE 125 (126)
T ss_pred C----CCCeEEEEEEEHhHccCCCc-----ccEeEEcccCCCCCCCcCcEEEEEEE-EEcc
Confidence 5 39999999999999987542 34699998754 346799999999 8753
No 19
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.86 E-value=1.2e-20 Score=143.22 Aligned_cols=116 Identities=22% Similarity=0.233 Sum_probs=97.7
Q ss_pred EEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCC-CcEEEEEEEeCCCCCCCC
Q 040360 11 TIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMH-ARFITVQVQCKSKSSSSG 89 (198)
Q Consensus 11 ~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~-~~~L~~eV~~~~~~~~~g 89 (198)
.|.|+|++|++|...+..+..||||+|.++. .+++|++.+++ .||.|||+|.|.+... ...|.|+|+|++. .+
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~--~~~kT~v~~~t-~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~---~~ 74 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNG--QTLETSVVKKS-CYPRWNEVFEFELMEGADSPLSVEVWDWDL---VS 74 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECC--EEEeceeecCC-CCCccCcEEEEEcCCCCCCEEEEEEEECCC---CC
Confidence 3899999999998777777899999999987 78899999886 8999999999999764 4689999999887 66
Q ss_pred CCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeC------CCCCccEEEEEEEE
Q 040360 90 NNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRN------AKGDKNGIINVSVR 141 (198)
Q Consensus 90 ~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~------~~Gk~~G~I~lsi~ 141 (198)
+ +++||.+.++|.++..+.. ...||.|.. .+++..|.|+|.|+
T Consensus 75 ~----~~~iG~~~~~l~~l~~~~~-----~~~w~~L~~~~~~~~~~~~~~G~l~~~~~ 123 (123)
T cd04025 75 K----NDFLGKVVFSIQTLQQAKQ-----EEGWFRLLPDPRAEEESGGNLGSLRLKVR 123 (123)
T ss_pred C----CcEeEEEEEEHHHcccCCC-----CCCEEECCCCCCCCccccCceEEEEEEeC
Confidence 3 8999999999999976532 235999886 35678899999874
No 20
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.86 E-value=1.6e-20 Score=142.78 Aligned_cols=117 Identities=14% Similarity=0.181 Sum_probs=98.3
Q ss_pred EEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEEeCCCCCCCCCC
Q 040360 12 IELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQCKSKSSSSGNN 91 (198)
Q Consensus 12 LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~~~~~~~~~g~~ 91 (198)
|.|+|++|++|...+..++.||||+|.+++ ....+|++++++ .||.|||.|.|.++...+.|.|+|||++. .+
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~-~~~~kT~v~~~t-~nP~Wne~f~~~~~~~~~~l~v~v~d~~~---~~-- 74 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDN-EVIIRTATVWKT-LNPFWGEEYTVHLPPGFHTVSFYVLDEDT---LS-- 74 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECC-EeeeeeeeEcCC-CCCcccceEEEeeCCCCCEEEEEEEECCC---CC--
Confidence 899999999998878788999999999987 345799999886 99999999999998766899999999987 66
Q ss_pred CCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeC--CCCCccEEEEEEEE
Q 040360 92 NNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRN--AKGDKNGIINVSVR 141 (198)
Q Consensus 92 ~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~--~~Gk~~G~I~lsi~ 141 (198)
+|++||++.+++.++..+.. . ...||.|+. ..++..|+|+|.++
T Consensus 75 --~d~~iG~~~~~~~~~~~~~~--~--~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 75 --RDDVIGKVSLTREVISAHPR--G--IDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred --CCCEEEEEEEcHHHhccCCC--C--CCcEEECeeeCCCCccccEEEEEEE
Confidence 38999999999998875321 1 236999865 45567999999886
No 21
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.86 E-value=2.1e-20 Score=143.81 Aligned_cols=120 Identities=19% Similarity=0.232 Sum_probs=98.2
Q ss_pred CcceEEEEEEEEeeCCCCCCC----------CCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEE
Q 040360 7 SGYRTIELTVLSGEDLRIDRR----------LIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFIT 76 (198)
Q Consensus 7 m~~~~LeVtVlsA~~L~~~~~----------~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~ 76 (198)
|+.+.|+|+|++|++|+..+. .+..||||+|.+++ ....+|++.+++ .||.|||+|.|.+.. .+.|.
T Consensus 1 ~~~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~-~~~~kT~~~~~t-~~P~Wne~f~~~v~~-~~~l~ 77 (132)
T cd04014 1 MFTGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDD-THIGKTSTKPKT-NSPVWNEEFTTEVHN-GRNLE 77 (132)
T ss_pred CcceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECC-EEEeEEeEcCCC-CCCCcceeEEEEcCC-CCEEE
Confidence 778999999999999986554 25789999999987 445699998875 999999999999974 57899
Q ss_pred EEEEeCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCccEEEEEEEEEeee
Q 040360 77 VQVQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDKNGIINVSVRSLKV 145 (198)
Q Consensus 77 ~eV~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~~G~I~lsi~~f~~ 145 (198)
|+|++++. .+ ++++||.+.|+|.++..+. ......||.|. +.|.|+|.+. ++.
T Consensus 78 ~~v~d~~~---~~----~~~~iG~~~i~l~~l~~~~---~~~~~~w~~L~-----~~G~l~l~~~-~~~ 130 (132)
T cd04014 78 LTVFHDAA---IG----PDDFVANCTISFEDLIQRG---SGSFDLWVDLE-----PQGKLHVKIE-LKG 130 (132)
T ss_pred EEEEeCCC---CC----CCceEEEEEEEhHHhcccC---CCcccEEEEcc-----CCcEEEEEEE-Eec
Confidence 99999876 55 3899999999999998741 11235799985 6799999999 764
No 22
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.85 E-value=1.7e-20 Score=142.47 Aligned_cols=120 Identities=14% Similarity=0.191 Sum_probs=99.6
Q ss_pred eEEEEEEEEeeCCCCCCC--CCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecC-CCcEEEEEEEeCCCCC
Q 040360 10 RTIELTVLSGEDLRIDRR--LIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPM-HARFITVQVQCKSKSS 86 (198)
Q Consensus 10 ~~LeVtVlsA~~L~~~~~--~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~-~~~~L~~eV~~~~~~~ 86 (198)
|.|.|+|++|++|...+. .+..||||+|.++. ++++|++++++ .||.|||.|.|.+.. ....|.|+|||++.
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~--~~~kT~~~~~t-~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~-- 75 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGA--QRFKTQTIPNT-LNPKWNYWCEFPIFSAQNQLLKLILWDKDR-- 75 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECC--EEEecceecCC-cCCccCCcEEEEecCCCCCEEEEEEEECCC--
Confidence 579999999999987666 78899999999987 78899999886 999999999999976 46799999999887
Q ss_pred CCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCC----CCccEEEEEEEE
Q 040360 87 SSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAK----GDKNGIINVSVR 141 (198)
Q Consensus 87 ~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~----Gk~~G~I~lsi~ 141 (198)
.++ +++||.+.|+|.++.... .......||.|.+.+ ++..|+|+|.+.
T Consensus 76 -~~~----~~~lG~~~i~l~~~~~~~--~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~ 127 (128)
T cd04024 76 -FAG----KDYLGEFDIALEEVFADG--KTGQSDKWITLKSTRPGKTSVVSGEIHLQFS 127 (128)
T ss_pred -CCC----CCcceEEEEEHHHhhccc--ccCccceeEEccCcccCccccccceEEEEEE
Confidence 553 899999999999997431 111235799998753 347999999987
No 23
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.85 E-value=4.5e-20 Score=138.42 Aligned_cols=112 Identities=15% Similarity=0.264 Sum_probs=95.9
Q ss_pred EEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCC-CcEEEEEEEeCCCCCCCC
Q 040360 11 TIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMH-ARFITVQVQCKSKSSSSG 89 (198)
Q Consensus 11 ~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~-~~~L~~eV~~~~~~~~~g 89 (198)
.|.|+|++|++|+..+..+..||||++.+++ ++++|++.+++ .||.|||+|.|.+... ...|.|+|||++. ++
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~--~~~kT~v~~~t-~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~---~~ 74 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGN--EKYKSKVCSKT-LNPQWLEQFDLHLFDDQSQILEIEVWDKDT---GK 74 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECC--EeEecccccCC-CCCceeEEEEEEecCCCCCEEEEEEEECCC---CC
Confidence 3789999999998777778899999999987 78899999886 9999999999998764 5799999999987 55
Q ss_pred CCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCccEEEEEEEE
Q 040360 90 NNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDKNGIINVSVR 141 (198)
Q Consensus 90 ~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~~G~I~lsi~ 141 (198)
+|++||.+.++|.++..+. ....||+|... +|+|++.+.
T Consensus 75 ----~~~~iG~~~~~l~~l~~~~-----~~~~w~~L~~~----~G~~~~~~~ 113 (116)
T cd08376 75 ----KDEFIGRCEIDLSALPREQ-----THSLELELEDG----EGSLLLLLT 113 (116)
T ss_pred ----CCCeEEEEEEeHHHCCCCC-----ceEEEEEccCC----CcEEEEEEE
Confidence 3899999999999987543 25689999743 599988887
No 24
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.85 E-value=2.5e-20 Score=142.14 Aligned_cols=118 Identities=25% Similarity=0.323 Sum_probs=96.6
Q ss_pred EEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEEeCCCCCCCCC
Q 040360 11 TIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQCKSKSSSSGN 90 (198)
Q Consensus 11 ~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~~~~~~~~~g~ 90 (198)
.|+|+|++|++|+..+.++..||||++.+++ .+.++|++++++ .||.|||+|.|.+.. ...|.|+|||++. +++
T Consensus 1 ~l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~-~~~~kT~v~~~t-~nP~Wne~f~~~~~~-~~~l~i~V~d~~~---~~~ 74 (123)
T cd08382 1 KVRLTVLCADGLAKRDLFRLPDPFAVITVDG-GQTHSTDVAKKT-LDPKWNEHFDLTVGP-SSIITIQVFDQKK---FKK 74 (123)
T ss_pred CeEEEEEEecCCCccCCCCCCCcEEEEEECC-ccceEccEEcCC-CCCcccceEEEEeCC-CCEEEEEEEECCC---CCC
Confidence 4899999999998777788999999999985 478899999876 899999999999976 5799999999887 542
Q ss_pred CCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCC----CCccEEEEEEE
Q 040360 91 NNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAK----GDKNGIINVSV 140 (198)
Q Consensus 91 ~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~----Gk~~G~I~lsi 140 (198)
++|++||++.|+|.++...... ...||.|+... +...|+|.+.+
T Consensus 75 --~~d~~lG~~~i~l~~l~~~~~~----~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 75 --KDQGFLGCVRIRANAVLPLKDT----GYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred --CCCceEeEEEEEHHHccccCCC----ccceeEeecCCCCCCceEeeEEEEEe
Confidence 1158999999999999865321 13488887643 56789998875
No 25
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.85 E-value=8.9e-21 Score=151.35 Aligned_cols=96 Identities=20% Similarity=0.296 Sum_probs=87.6
Q ss_pred CcceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEEeCCCCC
Q 040360 7 SGYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQCKSKSS 86 (198)
Q Consensus 7 m~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~~~~~~~ 86 (198)
|.-|.|+|+|++|.+|...+..+++||||+++++. ++.+|++..++ .||+|||.|+|.+.+....|.++|||++.
T Consensus 3 ~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~--q~lkT~~v~~n-~NPeWNe~ltf~v~d~~~~lkv~VyD~D~-- 77 (168)
T KOG1030|consen 3 MLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGN--QKLKTRVVYKN-LNPEWNEELTFTVKDPNTPLKVTVYDKDT-- 77 (168)
T ss_pred ccceEEEEEEEeecCeeeeccccCCCCeEEEEECC--eeeeeeeecCC-CCCcccceEEEEecCCCceEEEEEEeCCC--
Confidence 56689999999999998877778999999999999 99999988876 99999999999999988999999999998
Q ss_pred CCCCCCCCCceeEEEEEeCccccCCC
Q 040360 87 SSGNNNNHNKIVGFARIPVSDFIGGY 112 (198)
Q Consensus 87 ~~g~~~~~d~~IG~a~IpL~~l~~~~ 112 (198)
+.. |+++|.|.|+|..+....
T Consensus 78 -fs~----dD~mG~A~I~l~p~~~~~ 98 (168)
T KOG1030|consen 78 -FSS----DDFMGEATIPLKPLLEAQ 98 (168)
T ss_pred -CCc----ccccceeeeccHHHHHHh
Confidence 553 999999999999998764
No 26
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.84 E-value=5.2e-20 Score=139.09 Aligned_cols=115 Identities=16% Similarity=0.204 Sum_probs=95.4
Q ss_pred EEEEEEEeeCCCCCCCCCcCCcEEEEEECCC-CcEEEeeeecCCCCCCeeeeEEEEEecCC-CcEEEEEEEeCCCCCCCC
Q 040360 12 IELTVLSGEDLRIDRRLIKKNAFAIVQTDTS-FDYCTTKVDESGGSHPSWNEKLVIELPMH-ARFITVQVQCKSKSSSSG 89 (198)
Q Consensus 12 LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~-~~~~~T~v~~~~g~nP~WNE~f~f~v~~~-~~~L~~eV~~~~~~~~~g 89 (198)
|.|+|++|++|+..+..++.||||++.+.+. ..+++|++++++ .||+|||+|.|.+... ...|.|+|||++. ++
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t-~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~---~~ 77 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNS-INPVWNETFEFRIQSQVKNVLELTVMDEDY---VM 77 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCC-CCCccceEEEEEeCcccCCEEEEEEEECCC---CC
Confidence 7899999999987777789999999999742 356799999886 9999999999998653 4579999999887 55
Q ss_pred CCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCccEEEEEEEEEee
Q 040360 90 NNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDKNGIINVSVRSLK 144 (198)
Q Consensus 90 ~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~~G~I~lsi~~f~ 144 (198)
|++||++.++|+++..+. ....||+|.. +.+|+|++.+. +.
T Consensus 78 -----~~~iG~~~~~l~~l~~g~-----~~~~~~~L~~---~~~g~l~~~~~-~~ 118 (119)
T cd04036 78 -----DDHLGTVLFDVSKLKLGE-----KVRVTFSLNP---QGKEELEVEFL-LE 118 (119)
T ss_pred -----CcccEEEEEEHHHCCCCC-----cEEEEEECCC---CCCceEEEEEE-ee
Confidence 899999999999997653 2467999864 45888888887 53
No 27
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.84 E-value=7.4e-20 Score=137.53 Aligned_cols=113 Identities=15% Similarity=0.213 Sum_probs=95.3
Q ss_pred eEEEEEEEEeeCCCCCCC------CCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecC-CCcEEEEEEEeC
Q 040360 10 RTIELTVLSGEDLRIDRR------LIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPM-HARFITVQVQCK 82 (198)
Q Consensus 10 ~~LeVtVlsA~~L~~~~~------~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~-~~~~L~~eV~~~ 82 (198)
|.|+|+|++|++|+..+. .+..||||+|.+++ +.++|++.+++ .||.|||.|.|.+.. ....|.|+|+|+
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~--~~~kT~~~~~t-~~P~W~e~f~~~v~~~~~~~l~i~v~d~ 77 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGA--QTFKSKVIKEN-LNPKWNEVYEAVVDEVPGQELEIELFDE 77 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECC--EeEEccccCCC-CCCcccceEEEEeCCCCCCEEEEEEEec
Confidence 579999999999986543 25789999999988 78999999886 999999999999864 457999999998
Q ss_pred CCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCccEEEEEEEE
Q 040360 83 SKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDKNGIINVSVR 141 (198)
Q Consensus 83 ~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~~G~I~lsi~ 141 (198)
+. .. +++||.+.|+|.++..+.. ...||.|.+ ..+|+|+|.++
T Consensus 78 ~~---~~-----~~~iG~~~i~l~~l~~~~~-----~~~w~~L~~---~~~G~~~~~~~ 120 (121)
T cd08391 78 DP---DK-----DDFLGRLSIDLGSVEKKGF-----IDEWLPLED---VKSGRLHLKLE 120 (121)
T ss_pred CC---CC-----CCcEEEEEEEHHHhcccCc-----cceEEECcC---CCCceEEEEEe
Confidence 87 44 8999999999999986532 357999964 37899999987
No 28
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.83 E-value=1.2e-19 Score=137.99 Aligned_cols=104 Identities=21% Similarity=0.300 Sum_probs=87.7
Q ss_pred eEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCC----CcEEEEEEEeCCCC
Q 040360 10 RTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMH----ARFITVQVQCKSKS 85 (198)
Q Consensus 10 ~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~----~~~L~~eV~~~~~~ 85 (198)
|+|+|+|++|++|+..+..+++||||+|+++. +.++|++.++++.||.|||+|.|.++.. ...|.|+|+|++.
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~--~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~- 77 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRT--QERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN- 77 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECC--EeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc-
Confidence 57999999999998777778999999999987 7789998876569999999999999875 5789999999987
Q ss_pred CCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeC
Q 040360 86 SSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRN 127 (198)
Q Consensus 86 ~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~ 127 (198)
++. +++||++.|+|.++..+... ..||.|..
T Consensus 78 --~~~----d~~iG~~~i~l~~l~~~~~~-----~~~~~l~p 108 (124)
T cd04049 78 --FSD----DDFIGEATIHLKGLFEEGVE-----PGTAELVP 108 (124)
T ss_pred --CCC----CCeEEEEEEEhHHhhhCCCC-----cCceEeec
Confidence 552 89999999999999876432 34777654
No 29
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.82 E-value=3.7e-19 Score=135.89 Aligned_cols=114 Identities=23% Similarity=0.255 Sum_probs=97.0
Q ss_pred EEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecC---CCcEEEEEEEeCCCCCCCCCCC
Q 040360 16 VLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPM---HARFITVQVQCKSKSSSSGNNN 92 (198)
Q Consensus 16 VlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~---~~~~L~~eV~~~~~~~~~g~~~ 92 (198)
|++|++|.. ..++.||||+|.++. .+++|++.+++ .||+|||+|.|.+.. ....|.|+|++++. .++
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~--~~~kT~v~~~~-~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~---~~~-- 71 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRG--VKKKTRVLENE-LNPVWNETFEWPLAGSPDPDESLEIVVKDYEK---VGR-- 71 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECC--EeeecceeCCC-cCCcccceEEEEeCCCcCCCCEEEEEEEECCC---CCC--
Confidence 789999986 678899999999987 78899999887 999999999999964 35799999999987 553
Q ss_pred CCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCC-ccEEEEEEEEEeeeCC
Q 040360 93 NHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGD-KNGIINVSVRSLKVAA 147 (198)
Q Consensus 93 ~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk-~~G~I~lsi~~f~~~~ 147 (198)
|++||++.++|+++..+. ....+|+|.+.+++ .+|+|++++. |.++.
T Consensus 72 --d~~iG~~~~~l~~l~~~~-----~~~~~~~L~~~~~~~~~~~l~l~~~-~~~~~ 119 (127)
T cd08373 72 --NRLIGSATVSLQDLVSEG-----LLEVTEPLLDSNGRPTGATISLEVS-YQPPD 119 (127)
T ss_pred --CceEEEEEEEhhHcccCC-----ceEEEEeCcCCCCCcccEEEEEEEE-EeCCC
Confidence 899999999999998653 24679999887766 5899999999 87554
No 30
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.82 E-value=3.7e-19 Score=136.38 Aligned_cols=116 Identities=22% Similarity=0.282 Sum_probs=94.8
Q ss_pred EEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEEeCCCCC----
Q 040360 11 TIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQCKSKSS---- 86 (198)
Q Consensus 11 ~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~~~~~~~---- 86 (198)
.|+|+|++|++|...+..+..||||+|.++. ..++|++.+++ .||.|||+|.|.+......|.|+|||++...
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~--~~~kT~~v~~t-~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~ 78 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGK--TKKRTKTIPQN-LNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRL 78 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECC--EeeecceecCC-CCCccceEEEEEecCCCCEEEEEEEECCCCccccc
Confidence 5899999999998777778899999999987 77899998886 9999999999998765678999999987410
Q ss_pred ---C-CCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCC--CccEEEEEEE
Q 040360 87 ---S-SGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKG--DKNGIINVSV 140 (198)
Q Consensus 87 ---~-~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~G--k~~G~I~lsi 140 (198)
+ .+ .+++||.+.|+|.++.... ..||.|...++ +.+|+|.|++
T Consensus 79 ~~~~~~~----~~~~iG~~~i~l~~~~~~~-------~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 79 KQKFTRE----SDDFLGQTIIEVRTLSGEM-------DVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred ceecccc----CCCcceEEEEEhHHccCCC-------CeEEECccCCCCCcEeEEEEEEC
Confidence 0 12 3899999999999885331 36999987544 4799999874
No 31
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.82 E-value=2.5e-19 Score=137.07 Aligned_cols=103 Identities=16% Similarity=0.143 Sum_probs=83.3
Q ss_pred EEEEEEEEeeCCCCCCCCCcCCcEEEEEEC----CC-CcEEEeeeecCCCCCCeeeeEEEEEecCC----CcEEEEEEEe
Q 040360 11 TIELTVLSGEDLRIDRRLIKKNAFAIVQTD----TS-FDYCTTKVDESGGSHPSWNEKLVIELPMH----ARFITVQVQC 81 (198)
Q Consensus 11 ~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~----~~-~~~~~T~v~~~~g~nP~WNE~f~f~v~~~----~~~L~~eV~~ 81 (198)
+|.|+|++|++|+..+ .+..||||+|++- ++ .++++|++.+++ .||+|||+|.|.++.. ...|.|+|+|
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~t-lnPvwNE~f~F~v~~~~~~~~~~L~~~V~D 78 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNN-WSPKYNETFQFILGNEDDPESYELHICVKD 78 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCC-CCCccCcEEEEEeeCcCCCceeEEEEEEEE
Confidence 4899999999998765 4889999999983 21 246789999765 9999999999999743 2579999999
Q ss_pred CCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeC
Q 040360 82 KSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRN 127 (198)
Q Consensus 82 ~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~ 127 (198)
++. .+ +|++||++.|||.++..+. ....|++|..
T Consensus 79 ~d~---~~----~dd~IG~~~l~l~~~~~~~-----~~~~w~~L~~ 112 (120)
T cd08395 79 YCF---AR----DDRLVGVTVLQLRDIAQAG-----SCACWLPLGR 112 (120)
T ss_pred ecc---cC----CCCEEEEEEEEHHHCcCCC-----cEEEEEECcC
Confidence 876 55 3889999999999998654 1457999865
No 32
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.82 E-value=3.4e-19 Score=135.71 Aligned_cols=105 Identities=21% Similarity=0.238 Sum_probs=90.4
Q ss_pred eEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEEeCCCCCCCC
Q 040360 10 RTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQCKSKSSSSG 89 (198)
Q Consensus 10 ~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~~~~~~~~~g 89 (198)
|.|+|+|++|++|+..+.++.+||||+|+++. ...++|++.+++ .||.|||.|.|.+....+.|.|+|+|++. ++
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~-~~~~kT~~~~~t-~~P~Wne~f~~~v~~~~~~L~v~v~d~~~---~~ 75 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNG-IVKGRTVTISNT-LNPVWDEVLYVPVTSPNQKITLEVMDYEK---VG 75 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECC-EEeeceeEECCC-cCCccCceEEEEecCCCCEEEEEEEECCC---CC
Confidence 57999999999998877788999999999976 467899988775 99999999999997766899999999987 66
Q ss_pred CCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCC
Q 040360 90 NNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAK 129 (198)
Q Consensus 90 ~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~ 129 (198)
+ |++||++.++|.++..+. ...||.|.+.+
T Consensus 76 ~----d~~IG~~~~~l~~l~~~~------~~~~~~~~~~~ 105 (120)
T cd04045 76 K----DRSLGSVEINVSDLIKKN------EDGKYVEYDDE 105 (120)
T ss_pred C----CCeeeEEEEeHHHhhCCC------CCceEEecCCC
Confidence 3 889999999999998763 24699988754
No 33
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.82 E-value=2.1e-19 Score=137.21 Aligned_cols=103 Identities=20% Similarity=0.202 Sum_probs=86.3
Q ss_pred ceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEe-cC---CCcEEEEEEEe
Q 040360 9 YRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIEL-PM---HARFITVQVQC 81 (198)
Q Consensus 9 ~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v-~~---~~~~L~~eV~~ 81 (198)
.+.|.|+|++|++|...+ .+.+||||+|.+.++ ..+++|++++++ .||+|||+|.|++ +. ....|.|+|||
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~-~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d 89 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKT-RNPTFNEMLVYDGLPVEDLQQRVLQVSVWS 89 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCC-CCCCcccEEEEecCChHHhCCCEEEEEEEe
Confidence 478999999999998777 788999999999853 247899999887 9999999999997 43 35789999999
Q ss_pred CCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEe
Q 040360 82 KSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRL 125 (198)
Q Consensus 82 ~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L 125 (198)
++. ++ ++++||++.|+|+++..+.. ...||+|
T Consensus 90 ~d~---~~----~~~~lG~~~i~l~~l~~~~~-----~~~W~~L 121 (122)
T cd08381 90 HDS---LV----ENEFLGGVCIPLKKLDLSQE-----TEKWYPL 121 (122)
T ss_pred CCC---Cc----CCcEEEEEEEeccccccCCC-----ccceEEC
Confidence 987 55 38999999999999986532 2468887
No 34
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.81 E-value=2.6e-19 Score=132.72 Aligned_cols=101 Identities=15% Similarity=0.265 Sum_probs=86.3
Q ss_pred EEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecC-CCcEEEEEEEeCCCCCCCC
Q 040360 11 TIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPM-HARFITVQVQCKSKSSSSG 89 (198)
Q Consensus 11 ~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~-~~~~L~~eV~~~~~~~~~g 89 (198)
.|.|+|++|++|+..+..+.+||||+|++++ ++++|++.+++ .||+|||.|.|.+.. +...|.|+|+|++.
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~--~~~kT~v~~~t-~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~----- 72 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGK--TTQKSKVKERT-NNPVWEEGFTFLVRNPENQELEIEVKDDKT----- 72 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECC--EEEeCccccCC-CCCcccceEEEEeCCCCCCEEEEEEEECCC-----
Confidence 3889999999998777778999999999998 88999998876 999999999999976 45789999998653
Q ss_pred CCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeC
Q 040360 90 NNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRN 127 (198)
Q Consensus 90 ~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~ 127 (198)
+++||.+.|+|.++.... +.....||+|.+
T Consensus 73 -----~~~iG~~~i~l~~l~~~~---~~~~~~w~~L~~ 102 (105)
T cd04050 73 -----GKSLGSLTLPLSELLKEP---DLTLDQPFPLDN 102 (105)
T ss_pred -----CCccEEEEEEHHHhhccc---cceeeeeEecCC
Confidence 679999999999998653 223567999964
No 35
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.81 E-value=3.2e-19 Score=133.77 Aligned_cols=94 Identities=20% Similarity=0.241 Sum_probs=80.3
Q ss_pred eEEEEEEEEeeCCCCCCCC----CcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCC--CcEEEEEEEeCC
Q 040360 10 RTIELTVLSGEDLRIDRRL----IKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMH--ARFITVQVQCKS 83 (198)
Q Consensus 10 ~~LeVtVlsA~~L~~~~~~----~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~--~~~L~~eV~~~~ 83 (198)
|.|.|+|++|++|+..+.. +..||||+|.++. ++++|++++++ .||+|||.|.|.+... ...|.|+|||++
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~--~~~kT~v~~~t-~nPvWne~f~f~v~~~~~~~~L~~~V~D~d 77 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGR--RVFRTSWRRHT-LNPVFNERLAFEVYPHEKNFDIQFKVLDKD 77 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECC--EeEeeeeecCC-CCCcccceEEEEEeCccCCCEEEEEEEECC
Confidence 5799999999999864422 3589999999987 78899999987 9999999999998542 358999999998
Q ss_pred CCCCCCCCCCCCceeEEEEEeCccccCCCC
Q 040360 84 KSSSSGNNNNHNKIVGFARIPVSDFIGGYA 113 (198)
Q Consensus 84 ~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~ 113 (198)
. .+ +|++||++.|+|++|..++.
T Consensus 78 ~---~~----~dd~IG~~~l~L~~l~~~~~ 100 (108)
T cd04039 78 K---FS----FNDYVATGSLSVQELLNAAP 100 (108)
T ss_pred C---CC----CCcceEEEEEEHHHHHhhCC
Confidence 7 66 39999999999999998863
No 36
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.81 E-value=3.6e-19 Score=137.35 Aligned_cols=100 Identities=16% Similarity=0.128 Sum_probs=84.5
Q ss_pred eEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEEeCCCCCCCC
Q 040360 10 RTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQCKSKSSSSG 89 (198)
Q Consensus 10 ~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~~~~~~~~~g 89 (198)
+.|.|+|++|++|...+ ..||||+|++++ ++.+|++.++ .||+|||+|.|.+......|.|+|||++. +.
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~--~k~kT~v~~~--~nP~WnE~F~F~~~~~~~~L~v~V~dkd~---~~ 71 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQN--VKSTTIAVRG--SQPCWEQDFMFEINRLDLGLVIELWNKGL---IW 71 (127)
T ss_pred ceEEEEEEEeeCCCCCC---CCCCeEEEEECC--EEeEeeECCC--CCCceeeEEEEEEcCCCCEEEEEEEeCCC---cC
Confidence 47999999999997544 358999999988 7889999865 59999999999997766679999999886 66
Q ss_pred CCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeC
Q 040360 90 NNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRN 127 (198)
Q Consensus 90 ~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~ 127 (198)
|++||++.|||.++..+. ..+...||+|..
T Consensus 72 -----DD~lG~v~i~L~~v~~~~---~~~~~~Wy~L~~ 101 (127)
T cd08394 72 -----DTLVGTVWIPLSTIRQSN---EEGPGEWLTLDS 101 (127)
T ss_pred -----CCceEEEEEEhHHcccCC---CCCCCccEecCh
Confidence 999999999999998763 233457999985
No 37
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.81 E-value=6.8e-19 Score=131.65 Aligned_cols=113 Identities=24% Similarity=0.315 Sum_probs=95.2
Q ss_pred EEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecC-CCcEEEEEEEeCCCCCCCCC
Q 040360 12 IELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPM-HARFITVQVQCKSKSSSSGN 90 (198)
Q Consensus 12 LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~-~~~~L~~eV~~~~~~~~~g~ 90 (198)
|+|+|++|++|...+..+..||||+|.+++ ...++|++..++ .||.|||+|.|.+.. ..+.|.|+|||++. .++
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~-~~~~~T~v~~~~-~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~---~~~ 75 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNG-EKVFKTKTIKKT-LNPVWNESFEVPVPSRVRAVLKVEVYDWDR---GGK 75 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECC-CcceeeceecCC-CCCcccccEEEEeccCCCCEEEEEEEeCCC---CCC
Confidence 689999999998777778899999999987 466899998775 999999999999976 35789999999987 553
Q ss_pred CCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCccEEEEE
Q 040360 91 NNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDKNGIINV 138 (198)
Q Consensus 91 ~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~~G~I~l 138 (198)
+++||++.+++.++..+. ....+++|....+...|+|-|
T Consensus 76 ----~~~iG~~~~~l~~l~~~~-----~~~~~~~L~~~g~~~~~~~~~ 114 (115)
T cd04040 76 ----DDLLGSAYIDLSDLEPEE-----TTELTLPLDGQGGGKLGAVFL 114 (115)
T ss_pred ----CCceEEEEEEHHHcCCCC-----cEEEEEECcCCCCccCceEEc
Confidence 899999999999997653 246799998777778888754
No 38
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.80 E-value=1.6e-18 Score=134.15 Aligned_cols=121 Identities=14% Similarity=0.197 Sum_probs=96.4
Q ss_pred EEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecC----------CCcEEEEEEE
Q 040360 11 TIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPM----------HARFITVQVQ 80 (198)
Q Consensus 11 ~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~----------~~~~L~~eV~ 80 (198)
.|+|+|++|++|...+..+..||||+|.++. ++.+|++.+++ .||.|||.|.|.+.. ....|.|+||
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~--~~~kT~v~~~t-~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~ 78 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLN--QSQETEVIKET-LSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELF 78 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECC--eeeEeeeEcCC-CCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEE
Confidence 4899999999998878888999999999987 78899999886 999999999997421 1257999999
Q ss_pred eCCCCCCCCCCCCCCceeEEEEE-eCccccCCCCCCCceEeEEEEeeCCCCCccEEEEEEEEEeee
Q 040360 81 CKSKSSSSGNNNNHNKIVGFARI-PVSDFIGGYAPENYLHFLSYRLRNAKGDKNGIINVSVRSLKV 145 (198)
Q Consensus 81 ~~~~~~~~g~~~~~d~~IG~a~I-pL~~l~~~~~~~~~~~~~sy~L~~~~Gk~~G~I~lsi~~f~~ 145 (198)
|++. .+ +|++||++.+ |+..+.... .......||.|. +.|+.+|+|.|++. +.+
T Consensus 79 d~d~---~~----~d~~iG~~~i~~~~~~~~~~--~~~~~~~W~~L~-~~~~~~Geil~~~~-~~~ 133 (135)
T cd04017 79 DQDS---VG----KDEFLGRSVAKPLVKLDLEE--DFPPKLQWFPIY-KGGQSAGELLAAFE-LIE 133 (135)
T ss_pred eCcC---CC----CCccceEEEeeeeeecccCC--CCCCCceEEEee-cCCCchhheeEEeE-EEE
Confidence 9987 56 3899999997 555444321 223456799997 45678999999998 653
No 39
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.80 E-value=4e-19 Score=133.06 Aligned_cols=94 Identities=11% Similarity=0.161 Sum_probs=80.6
Q ss_pred eEEEEEEEEeeCCCCCCCC-CcCCcEEEEEECCC-CcEEEeeeecCCCCCCeeeeEEEEEecCC----CcEEEEEEEeCC
Q 040360 10 RTIELTVLSGEDLRIDRRL-IKKNAFAIVQTDTS-FDYCTTKVDESGGSHPSWNEKLVIELPMH----ARFITVQVQCKS 83 (198)
Q Consensus 10 ~~LeVtVlsA~~L~~~~~~-~~~dpYvvv~~~~~-~~~~~T~v~~~~g~nP~WNE~f~f~v~~~----~~~L~~eV~~~~ 83 (198)
|.|+|+|++|++|...+.. ++.||||+|.+.+. ...++|++++++ .||+|||+|.|.+... ...|.|+|||++
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t-~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d 79 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKD-LNPVWEETWFVLVTPDEVKAGERLSCRLWDSD 79 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCC-CCCccceeEEEEeCchhccCCCEEEEEEEeCC
Confidence 5899999999999877766 88999999999652 356799999987 9999999999988642 468999999998
Q ss_pred CCCCCCCCCCCCceeEEEEEeCccccCC
Q 040360 84 KSSSSGNNNNHNKIVGFARIPVSDFIGG 111 (198)
Q Consensus 84 ~~~~~g~~~~~d~~IG~a~IpL~~l~~~ 111 (198)
. +++ |++||++.|+|+++.+.
T Consensus 80 ~---~~~----dd~lG~~~i~l~~l~~~ 100 (111)
T cd04041 80 R---FTA----DDRLGRVEIDLKELIED 100 (111)
T ss_pred C---CCC----CCcceEEEEEHHHHhcC
Confidence 7 553 89999999999999854
No 40
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.80 E-value=2.3e-18 Score=131.79 Aligned_cols=120 Identities=19% Similarity=0.241 Sum_probs=95.0
Q ss_pred eEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEEeCCCCCCCC
Q 040360 10 RTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQCKSKSSSSG 89 (198)
Q Consensus 10 ~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~~~~~~~~~g 89 (198)
..|+|+|++|+.+. .+..+++||||+|.+++ ....+|++.+++ .||.|||.|.|.+.. ...|.|+|||++. .+
T Consensus 2 ~~L~V~i~~a~l~~-~~~~~~~dPyv~v~~~~-~~~~kT~v~~~t-~~P~Wne~f~~~~~~-~~~l~~~V~d~~~---~~ 74 (125)
T cd04021 2 SQLQITVESAKLKS-NSKSFKPDPYVEVTVDG-QPPKKTEVSKKT-SNPKWNEHFTVLVTP-QSTLEFKVWSHHT---LK 74 (125)
T ss_pred ceEEEEEEeeECCC-CCcCCCCCeEEEEEECC-cccEEeeeeCCC-CCCccccEEEEEeCC-CCEEEEEEEeCCC---CC
Confidence 46999999999444 44478899999999987 347899998875 999999999999875 4789999999987 55
Q ss_pred CCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCC---CCccEEEEEEE
Q 040360 90 NNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAK---GDKNGIINVSV 140 (198)
Q Consensus 90 ~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~---Gk~~G~I~lsi 140 (198)
.+++||++.++|+++.......-.....++.|.+++ ++..|.|++.+
T Consensus 75 ----~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 75 ----ADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred ----CCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 389999999999999865321112234688888644 47899998875
No 41
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.80 E-value=2.8e-18 Score=130.12 Aligned_cols=116 Identities=21% Similarity=0.369 Sum_probs=95.3
Q ss_pred eEEEEEEEEeeCCCCCC--CCCcCCcEEEEEECCC----CcEEEeeeecCCCCCCeeeeEEEEEecCC-CcEEEEEEEeC
Q 040360 10 RTIELTVLSGEDLRIDR--RLIKKNAFAIVQTDTS----FDYCTTKVDESGGSHPSWNEKLVIELPMH-ARFITVQVQCK 82 (198)
Q Consensus 10 ~~LeVtVlsA~~L~~~~--~~~~~dpYvvv~~~~~----~~~~~T~v~~~~g~nP~WNE~f~f~v~~~-~~~L~~eV~~~ 82 (198)
..|+|+|++|++|+..+ ..+..||||++++... ..+++|+++.+++.||.|||+|.|.+... ...|.|+|+|+
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~ 81 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE 81 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence 57999999999998655 4678999999999531 25689999887756999999999998643 46899999998
Q ss_pred CCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCC--ccEEEEEEEE
Q 040360 83 SKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGD--KNGIINVSVR 141 (198)
Q Consensus 83 ~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk--~~G~I~lsi~ 141 (198)
+. .. +++||++.++|.++..+. .+++|+++.|+ ..|.|.+.++
T Consensus 82 ~~---~~-----~~~iG~~~~~l~~l~~g~--------~~~~l~~~~~~~~~~~~l~v~~~ 126 (128)
T cd00275 82 DS---GD-----DDFLGQACLPLDSLRQGY--------RHVPLLDSKGEPLELSTLFVHID 126 (128)
T ss_pred CC---CC-----CcEeEEEEEEhHHhcCce--------EEEEecCCCCCCCcceeEEEEEE
Confidence 87 44 899999999999996542 47899988885 5788888877
No 42
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.80 E-value=6.8e-19 Score=131.61 Aligned_cols=104 Identities=16% Similarity=0.189 Sum_probs=86.5
Q ss_pred EEEEEEEeeCCCCCCC-CCcCCcEEEEEECCCCcEEEeeeecCCCCCCee-eeEEEEEecCC---CcEEEEEEEeCCCCC
Q 040360 12 IELTVLSGEDLRIDRR-LIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSW-NEKLVIELPMH---ARFITVQVQCKSKSS 86 (198)
Q Consensus 12 LeVtVlsA~~L~~~~~-~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~W-NE~f~f~v~~~---~~~L~~eV~~~~~~~ 86 (198)
|+|+|++|++|+..+. .+..||||+|.+++ ++++|++++++ .||.| ||+|.|.++.. .+.|.|+|+|++.
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~--~~~kT~v~~~~-~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~-- 75 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGS--TTYKTDVVKKS-LNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDT-- 75 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECC--eeEecceecCC-CCCcccCcEEEEEcChHHcCCCeEEEEEEeCCC--
Confidence 6899999999986553 57899999999988 88999999886 99999 99999999763 4689999999987
Q ss_pred CCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeC
Q 040360 87 SSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRN 127 (198)
Q Consensus 87 ~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~ 127 (198)
++ ++++||++.++|.++.... ++.....||.|.+
T Consensus 76 -~~----~~~~iG~~~~~l~~l~~~~--~~~~~~~w~~l~~ 109 (110)
T cd08688 76 -YS----ANDAIGKVYIDLNPLLLKD--SVSQISGWFPIYD 109 (110)
T ss_pred -CC----CCCceEEEEEeHHHhcccC--CccccCCeEEccc
Confidence 66 3899999999999998731 1122456999875
No 43
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.80 E-value=3.4e-18 Score=129.92 Aligned_cols=119 Identities=16% Similarity=0.249 Sum_probs=95.6
Q ss_pred EEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC-CcEEEeeeecCCCCCCeeeeEEEEEecCC-CcEEEEEEEeCCCCCCC
Q 040360 11 TIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS-FDYCTTKVDESGGSHPSWNEKLVIELPMH-ARFITVQVQCKSKSSSS 88 (198)
Q Consensus 11 ~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~-~~~~~T~v~~~~g~nP~WNE~f~f~v~~~-~~~L~~eV~~~~~~~~~ 88 (198)
.|.|+|++|++|+..+..+..||||+|.+... ...++|++.+++ .||.|||+|.|.+... ...|.|+|||++. +
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t-~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~---~ 77 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDT-LNPRWDEEFELEVPAGEPLWISATVWDRSF---V 77 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCC-CCCcccceEEEEcCCCCCCEEEEEEEECCC---C
Confidence 58999999999988777789999999998752 246799998886 9999999999999763 5789999999987 5
Q ss_pred CCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCccEEEEEEEEEeee
Q 040360 89 GNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDKNGIINVSVRSLKV 145 (198)
Q Consensus 89 g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~~G~I~lsi~~f~~ 145 (198)
+ ++++||++.++|.++..+. ++.....|+.|. +.|+|+|.+. +..
T Consensus 78 ~----~~~~iG~~~i~l~~~~~~~--~~~~~~~w~~l~-----~~g~i~l~~~-~~~ 122 (126)
T cd04043 78 G----KHDLCGRASLKLDPKRFGD--DGLPREIWLDLD-----TQGRLLLRVS-MEG 122 (126)
T ss_pred C----CCceEEEEEEecCHHHcCC--CCCCceEEEEcC-----CCCeEEEEEE-Eee
Confidence 5 3899999999999865331 122346799985 2688888888 654
No 44
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.80 E-value=1.2e-18 Score=130.20 Aligned_cols=102 Identities=13% Similarity=0.147 Sum_probs=86.0
Q ss_pred EEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCC-----CcEEEEEEEeCCCC
Q 040360 11 TIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMH-----ARFITVQVQCKSKS 85 (198)
Q Consensus 11 ~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~-----~~~L~~eV~~~~~~ 85 (198)
.|+|+|++|++|. .+..||||+|++++ ++++|++.+++ .||.|||+|.|.+... ...|.|+|+|++.
T Consensus 5 ~l~V~v~~a~~L~----~~~~dpyv~v~~~~--~~~kT~~~~~t-~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~- 76 (111)
T cd04011 5 QVRVRVIEARQLV----GGNIDPVVKVEVGG--QKKYTSVKKGT-NCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS- 76 (111)
T ss_pred EEEEEEEEcccCC----CCCCCCEEEEEECC--EeeeeeEEecc-CCCccccEEEEecCCCHHHHhcCeEEEEEEcCcc-
Confidence 5899999999998 46789999999998 78899998876 8999999999997432 3589999999887
Q ss_pred CCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCC
Q 040360 86 SSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNA 128 (198)
Q Consensus 86 ~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~ 128 (198)
++ +|++||++.|+|+++..+. ++.....||.|.++
T Consensus 77 --~~----~~~~iG~~~i~l~~v~~~~--~~~~~~~w~~L~~~ 111 (111)
T cd04011 77 --LR----SDTLIGSFKLDVGTVYDQP--DHAFLRKWLLLTDP 111 (111)
T ss_pred --cc----cCCccEEEEECCccccCCC--CCcceEEEEEeeCc
Confidence 55 2899999999999998763 33456779999864
No 45
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.80 E-value=9e-19 Score=135.10 Aligned_cols=109 Identities=20% Similarity=0.194 Sum_probs=88.1
Q ss_pred CcceEEEEEEEEeeCCCCCCC-CCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEecCC---CcEEEEEE
Q 040360 7 SGYRTIELTVLSGEDLRIDRR-LIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIELPMH---ARFITVQV 79 (198)
Q Consensus 7 m~~~~LeVtVlsA~~L~~~~~-~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v~~~---~~~L~~eV 79 (198)
...+.|.|+|++|+||...+. .+..||||++.+.++ ..+.+|++.+++ .||+|||+|.|.++.. ...|.|.|
T Consensus 12 ~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t-~nPvfNE~F~f~v~~~~l~~~~L~v~V 90 (128)
T cd08392 12 FRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGT-VNPVFNETLKYVVEADLLSSRQLQVSV 90 (128)
T ss_pred CCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCC-CCCccceEEEEEcCHHHhCCcEEEEEE
Confidence 345799999999999987665 388999999999863 247799999886 9999999999999763 46999999
Q ss_pred EeCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEe
Q 040360 80 QCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRL 125 (198)
Q Consensus 80 ~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L 125 (198)
++.+. ++ ++++||++.|+|+++.-.. .......||.|
T Consensus 91 ~~~~~---~~----~~~~lG~~~i~L~~~~~~~--~~~~~~~W~~l 127 (128)
T cd08392 91 WHSRT---LK----RRVFLGEVLIPLADWDFED--TDSQRFLWYPL 127 (128)
T ss_pred EeCCC---Cc----CcceEEEEEEEcCCcccCC--CCccccceEEC
Confidence 99887 55 3899999999999985432 12235679987
No 46
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.79 E-value=9e-19 Score=133.67 Aligned_cols=93 Identities=17% Similarity=0.294 Sum_probs=79.3
Q ss_pred cceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC--CcEEEeeeecCCCCCCeeeeEEEEEecCC---CcEEEEEEEeC
Q 040360 8 GYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS--FDYCTTKVDESGGSHPSWNEKLVIELPMH---ARFITVQVQCK 82 (198)
Q Consensus 8 ~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~--~~~~~T~v~~~~g~nP~WNE~f~f~v~~~---~~~L~~eV~~~ 82 (198)
..+.|.|+|++|++|+. .+.+||||+|.+.++ ..+++|+|.+++ .||+|||+|.|+++.+ ...|.|+|+|.
T Consensus 12 ~~~~L~V~vikA~~L~~---~g~sDPYVKv~L~~~~k~~k~kT~v~rkt-lnPvfnE~f~F~v~~~~l~~~tL~~~V~d~ 87 (118)
T cd08677 12 QKAELHVNILEAENISV---DAGCECYISGCVSVSEGQKEAQTALKKLA-LHTQWEEELVFPLPEEESLDGTLTLTLRCC 87 (118)
T ss_pred cCCEEEEEEEEecCCCC---CCCCCeEEEEEEcCCcCccEEEcceecCC-CCCccccEEEEeCCHHHhCCcEEEEEEEeC
Confidence 35789999999999982 356899999999753 357899999987 9999999999999863 46899999999
Q ss_pred CCCCCCCCCCCCCceeEEEEEeCccccCC
Q 040360 83 SKSSSSGNNNNHNKIVGFARIPVSDFIGG 111 (198)
Q Consensus 83 ~~~~~~g~~~~~d~~IG~a~IpL~~l~~~ 111 (198)
+. ++ ++++||++.++|.++..+
T Consensus 88 Dr---fs----~~d~IG~v~l~l~~~~~~ 109 (118)
T cd08677 88 DR---FS----RHSTLGELRLKLADVSMM 109 (118)
T ss_pred CC---CC----CCceEEEEEEccccccCC
Confidence 98 76 499999999999987443
No 47
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.79 E-value=1.7e-18 Score=132.74 Aligned_cols=105 Identities=16% Similarity=0.217 Sum_probs=85.9
Q ss_pred cceEEEEEEEEeeCCCCCCC-CCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEecC---CCcEEEEEEE
Q 040360 8 GYRTIELTVLSGEDLRIDRR-LIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIELPM---HARFITVQVQ 80 (198)
Q Consensus 8 ~~~~LeVtVlsA~~L~~~~~-~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v~~---~~~~L~~eV~ 80 (198)
..+.|.|+|++|+||...+. .+..||||+|.+.++ ..+.+|++.+++ .||+|||+|.|.++. ....|.|+||
T Consensus 13 ~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t-~nP~wnE~f~f~i~~~~l~~~~L~~~V~ 91 (125)
T cd04029 13 KTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNT-TNPVYNETLKYSISHSQLETRTLQLSVW 91 (125)
T ss_pred CCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCC-CCCcccceEEEECCHHHhCCCEEEEEEE
Confidence 45789999999999976543 478999999999753 236799998876 999999999999975 3468999999
Q ss_pred eCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEe
Q 040360 81 CKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRL 125 (198)
Q Consensus 81 ~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L 125 (198)
|++. ++ ++++||++.|+|.++..... ...||+|
T Consensus 92 d~~~---~~----~~~~lG~~~i~l~~~~~~~~-----~~~w~~l 124 (125)
T cd04029 92 HYDR---FG----RNTFLGEVEIPLDSWNFDSQ-----HEECLPL 124 (125)
T ss_pred ECCC---CC----CCcEEEEEEEeCCcccccCC-----cccEEEC
Confidence 9987 66 38999999999999975542 3468887
No 48
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.79 E-value=1.7e-18 Score=131.38 Aligned_cols=106 Identities=15% Similarity=0.156 Sum_probs=87.6
Q ss_pred cceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC-CcEEEeeeecCCCCCCeeeeEEEEEecC---CCcEEEEEEEeCC
Q 040360 8 GYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS-FDYCTTKVDESGGSHPSWNEKLVIELPM---HARFITVQVQCKS 83 (198)
Q Consensus 8 ~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~-~~~~~T~v~~~~g~nP~WNE~f~f~v~~---~~~~L~~eV~~~~ 83 (198)
..+.|.|+|++|++|...+..+..||||+|.+.+. ..+++|++.+++ .||.|||+|.|.++. ....|.|+|+|++
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t-~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d 92 (124)
T cd08385 14 QSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKT-LNPVFNETFTFKVPYSELGNKTLVFSVYDFD 92 (124)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCC-CCCceeeeEEEeCCHHHhCCCEEEEEEEeCC
Confidence 45789999999999987777788999999999753 356799999876 999999999999875 2468999999998
Q ss_pred CCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEee
Q 040360 84 KSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLR 126 (198)
Q Consensus 84 ~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~ 126 (198)
. ++ ++++||++.|+|+++..+.. ...||+|.
T Consensus 93 ~---~~----~~~~lG~~~i~l~~~~~~~~-----~~~W~~l~ 123 (124)
T cd08385 93 R---FS----KHDLIGEVRVPLLTVDLGHV-----TEEWRDLE 123 (124)
T ss_pred C---CC----CCceeEEEEEecCcccCCCC-----cceEEEcc
Confidence 7 55 38999999999999876432 34688874
No 49
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.79 E-value=2e-18 Score=136.39 Aligned_cols=108 Identities=17% Similarity=0.174 Sum_probs=87.6
Q ss_pred ceEEEEEEEEeeCCCCC-CCCCcCCcEEEEEECCCC---cEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEEe-CC
Q 040360 9 YRTIELTVLSGEDLRID-RRLIKKNAFAIVQTDTSF---DYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQC-KS 83 (198)
Q Consensus 9 ~~~LeVtVlsA~~L~~~-~~~~~~dpYvvv~~~~~~---~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~~-~~ 83 (198)
.+.|+|+|++|++|... +..+..||||++.+.++. .+.+|++++++ .||+|||+|.|.++.....|.|+||+ .+
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kkt-lnPvfNE~F~f~v~l~~~~L~v~V~~d~~ 106 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKT-LDPLYQQQLVFDVSPTGKTLQVIVWGDYG 106 (146)
T ss_pred CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCC-CCCccCCeEEEEEcCCCCEEEEEEEeCCC
Confidence 47899999999999764 345789999999997631 37899999887 99999999999998777899999994 55
Q ss_pred CCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCC
Q 040360 84 KSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAK 129 (198)
Q Consensus 84 ~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~ 129 (198)
. +. ++++||++.|+|+++..+. ....||.|....
T Consensus 107 ~---~~----~~~~iG~~~i~L~~l~~~~-----~~~~Wy~L~~~~ 140 (146)
T cd04028 107 R---MD----KKVFMGVAQILLDDLDLSN-----LVIGWYKLFPTS 140 (146)
T ss_pred C---CC----CCceEEEEEEEcccccCCC-----CceeEEecCCcc
Confidence 4 44 3889999999999985432 135799998643
No 50
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.79 E-value=1.8e-18 Score=132.43 Aligned_cols=105 Identities=16% Similarity=0.217 Sum_probs=86.0
Q ss_pred cceEEEEEEEEeeCCCCCCCC-CcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEecC---CCcEEEEEEE
Q 040360 8 GYRTIELTVLSGEDLRIDRRL-IKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIELPM---HARFITVQVQ 80 (198)
Q Consensus 8 ~~~~LeVtVlsA~~L~~~~~~-~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v~~---~~~~L~~eV~ 80 (198)
..+.|.|+|++|+||...+.. +..||||+|.+.++ ..+++|++++++ .||+|||+|.|+++. ....|.|+||
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t-~nP~~nE~f~f~v~~~~l~~~~L~~~V~ 91 (125)
T cd08393 13 KLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKT-LNPVFNETLRYKVEREELPTRVLNLSVW 91 (125)
T ss_pred CCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCC-CCCccCceEEEECCHHHhCCCEEEEEEE
Confidence 347899999999999876654 78999999999753 245799999987 999999999999974 3468999999
Q ss_pred eCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEe
Q 040360 81 CKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRL 125 (198)
Q Consensus 81 ~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L 125 (198)
|.+. ++ ++++||++.|+|.++..... ...||.|
T Consensus 92 d~~~---~~----~~~~iG~~~i~L~~~~~~~~-----~~~W~~L 124 (125)
T cd08393 92 HRDS---LG----RNSFLGEVEVDLGSWDWSNT-----QPTWYPL 124 (125)
T ss_pred eCCC---CC----CCcEeEEEEEecCccccCCC-----CcceEEC
Confidence 9887 66 38999999999999954421 3468876
No 51
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.78 E-value=2.2e-18 Score=136.28 Aligned_cols=104 Identities=21% Similarity=0.242 Sum_probs=84.0
Q ss_pred EEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEec-------------C---C
Q 040360 11 TIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIELP-------------M---H 71 (198)
Q Consensus 11 ~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v~-------------~---~ 71 (198)
+|.|+|++|++|.. ..+..||||+|.+.++ .++.+|++++++ .||+|||+|.|++. . .
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t-~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~ 77 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKT-NNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAE 77 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCC-CCCccceEEEEEEecccccccccccCCccccc
Confidence 48999999999986 5578999999999873 156789999886 99999999999984 1 1
Q ss_pred CcEEEEEEEeCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCC
Q 040360 72 ARFITVQVQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNA 128 (198)
Q Consensus 72 ~~~L~~eV~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~ 128 (198)
...|.|+||+++. .+ +|++||++.|+|.++..+.. ....||+|...
T Consensus 78 ~~~L~i~V~d~~~---~~----~ddfLG~v~i~l~~l~~~~~----~~~~W~~L~~~ 123 (148)
T cd04010 78 KLELRVDLWHASM---GG----GDVFLGEVRIPLRGLDLQAG----SHQAWYFLQPR 123 (148)
T ss_pred EEEEEEEEEcCCC---CC----CCceeEEEEEecccccccCC----cCcceeecCCc
Confidence 2579999999886 54 38999999999999986511 12469999764
No 52
>PLN03008 Phospholipase D delta
Probab=99.78 E-value=3.5e-18 Score=163.77 Aligned_cols=132 Identities=22% Similarity=0.348 Sum_probs=108.0
Q ss_pred CCCCCCCc----ceEEEEEEEEeeCCCCCC------------------------------------------CCCcCCcE
Q 040360 1 MLEKSSSG----YRTIELTVLSGEDLRIDR------------------------------------------RLIKKNAF 34 (198)
Q Consensus 1 ~~~~~~m~----~~~LeVtVlsA~~L~~~~------------------------------------------~~~~~dpY 34 (198)
|+++..+. -|+|+|+|..|++|++.+ ..+++|||
T Consensus 1 ~~~~~~~~~~llhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPY 80 (868)
T PLN03008 1 MAEKVSEDVMLLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPY 80 (868)
T ss_pred CccccccceEEeecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCce
Confidence 44554443 389999999999986300 02467999
Q ss_pred EEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEEeCCCCCCCCCCCCCCceeEEEEEeCccccCCCCC
Q 040360 35 AIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAP 114 (198)
Q Consensus 35 vvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~ 114 (198)
|+|.++. ....+|++.+++ .||+|||+|.|.+.+....|.|+|+|++. ++ +++||++.|||.+|..|..
T Consensus 81 V~I~Lg~-~rv~RTrVi~n~-~NPvWNE~F~f~vah~~s~L~f~VkD~D~---~g-----aD~IG~a~IPL~~L~~Ge~- 149 (868)
T PLN03008 81 VTVVVPQ-ATLARTRVLKNS-QEPLWDEKFNISIAHPFAYLEFQVKDDDV---FG-----AQIIGTAKIPVRDIASGER- 149 (868)
T ss_pred EEEEECC-cceeeEEeCCCC-CCCCcceeEEEEecCCCceEEEEEEcCCc---cC-----CceeEEEEEEHHHcCCCCc-
Confidence 9999987 456799999886 89999999999998877899999999998 78 7899999999999988742
Q ss_pred CCceEeEEEEeeCCCCC---ccEEEEEEEEEeeeCCc
Q 040360 115 ENYLHFLSYRLRNAKGD---KNGIINVSVRSLKVAAD 148 (198)
Q Consensus 115 ~~~~~~~sy~L~~~~Gk---~~G~I~lsi~~f~~~~~ 148 (198)
...|++|.+..|+ ..++|+|+++ |.+-..
T Consensus 150 ----vd~Wl~Ll~~~~kp~k~~~kl~v~lq-f~pv~~ 181 (868)
T PLN03008 150 ----ISGWFPVLGASGKPPKAETAIFIDMK-FTPFDQ 181 (868)
T ss_pred ----eEEEEEccccCCCCCCCCcEEEEEEE-EEEccc
Confidence 4579999998876 4579999999 987644
No 53
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.78 E-value=2.9e-18 Score=130.24 Aligned_cols=106 Identities=12% Similarity=0.203 Sum_probs=88.7
Q ss_pred cceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC-CcEEEeeeecCCCCCCeeeeEEEEEecCC---CcEEEEEEEeCC
Q 040360 8 GYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS-FDYCTTKVDESGGSHPSWNEKLVIELPMH---ARFITVQVQCKS 83 (198)
Q Consensus 8 ~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~-~~~~~T~v~~~~g~nP~WNE~f~f~v~~~---~~~L~~eV~~~~ 83 (198)
..+.|.|+|++|++|...+..+..||||+|.+.+. ...++|++.+++ .||+|||+|.|.++.. ...|.|+|+|++
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t-~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~ 92 (124)
T cd08387 14 DMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKT-LNPEFDESFVFEVPPQELPKRTLEVLLYDFD 92 (124)
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCC-CCCCcccEEEEeCCHHHhCCCEEEEEEEECC
Confidence 34789999999999987777788999999999542 457899999886 9999999999998753 468999999998
Q ss_pred CCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEee
Q 040360 84 KSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLR 126 (198)
Q Consensus 84 ~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~ 126 (198)
. ++ ++++||++.|+|.++..+. ....||.|.
T Consensus 93 ~---~~----~~~~iG~~~i~l~~~~~~~-----~~~~W~~l~ 123 (124)
T cd08387 93 Q---FS----RDECIGVVELPLAEVDLSE-----KLDLWRKIQ 123 (124)
T ss_pred C---CC----CCceeEEEEEecccccCCC-----CcceEEECc
Confidence 7 65 3899999999999997553 135799885
No 54
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.78 E-value=1.4e-18 Score=132.32 Aligned_cols=104 Identities=16% Similarity=0.175 Sum_probs=83.7
Q ss_pred ceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEecCC--CcEEEEEEEeCC
Q 040360 9 YRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIELPMH--ARFITVQVQCKS 83 (198)
Q Consensus 9 ~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v~~~--~~~L~~eV~~~~ 83 (198)
.+.|+|+|++|+||...+ .+..||||+|.+.++ ..+.+|++.+++ .||+|||+|.|.++.. ...|.|+||+++
T Consensus 11 ~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t-~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~ 88 (119)
T cd08685 11 NRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDS-ANPLFHETFSFDVNERDYQKRLLVTVWNKL 88 (119)
T ss_pred CCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCC-CCCccccEEEEEcChHHhCCEEEEEEECCC
Confidence 478999999999998766 678999999999873 236689999886 9999999999999753 357889999987
Q ss_pred CCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEe
Q 040360 84 KSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRL 125 (198)
Q Consensus 84 ~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L 125 (198)
. ... ++++||.+.|||.++..+.. ...||.|
T Consensus 89 ~---~~~---~~~~lG~~~i~l~~~~~~~~-----~~~Wy~l 119 (119)
T cd08685 89 S---KSR---DSGLLGCMSFGVKSIVNQKE-----ISGWYYL 119 (119)
T ss_pred C---CcC---CCEEEEEEEecHHHhccCcc-----ccceEeC
Confidence 6 321 27899999999999985432 2468876
No 55
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.78 E-value=8.5e-18 Score=132.51 Aligned_cols=91 Identities=18% Similarity=0.356 Sum_probs=82.1
Q ss_pred eEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEEeCCCCCCCC
Q 040360 10 RTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQCKSKSSSSG 89 (198)
Q Consensus 10 ~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~~~~~~~~~g 89 (198)
|.|.|+|++|++|...+. +..||||++.++. ++++|++.+++ .||+|||+|.|.++.....|.|+|||++. ++
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~--~~~kT~vvk~t-~nP~WnE~f~f~i~~~~~~l~~~V~D~d~---~~ 74 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGN--QKVKTRVIKKN-LNPVWNEELTLSVPNPMAPLKLEVFDKDT---FS 74 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CCcCcEEEEEECC--EEEEeeeEcCC-CCCeecccEEEEecCCCCEEEEEEEECCC---CC
Confidence 789999999999986665 7899999999988 88999999886 99999999999998777899999999987 66
Q ss_pred CCCCCCceeEEEEEeCccccCC
Q 040360 90 NNNNHNKIVGFARIPVSDFIGG 111 (198)
Q Consensus 90 ~~~~~d~~IG~a~IpL~~l~~~ 111 (198)
+ |++||.+.++|.++...
T Consensus 75 ~----dd~iG~a~i~l~~l~~~ 92 (145)
T cd04038 75 K----DDSMGEAEIDLEPLVEA 92 (145)
T ss_pred C----CCEEEEEEEEHHHhhhh
Confidence 3 89999999999998765
No 56
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.77 E-value=5.7e-18 Score=128.71 Aligned_cols=105 Identities=16% Similarity=0.140 Sum_probs=86.6
Q ss_pred ceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEecCC---CcEEEEEEEeC
Q 040360 9 YRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIELPMH---ARFITVQVQCK 82 (198)
Q Consensus 9 ~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v~~~---~~~L~~eV~~~ 82 (198)
.+.|.|+|++|++|+..+..+..||||+|.+.++ ..+++|++.+++ .||+|||+|.|.++.. ...|.|+|+++
T Consensus 15 ~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~-~nP~wne~f~f~i~~~~l~~~~l~i~v~~~ 93 (127)
T cd04030 15 RQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDN-LNPVFDETFEFPVSLEELKRRTLDVAVKNS 93 (127)
T ss_pred CCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCC-CCCEECeEEEEecCHHHhcCCEEEEEEEEC
Confidence 4789999999999988777789999999999752 357899999886 8999999999999653 46899999998
Q ss_pred CCCCCC-CCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEe
Q 040360 83 SKSSSS-GNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRL 125 (198)
Q Consensus 83 ~~~~~~-g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L 125 (198)
+. ++ + ++++||++.|+|.++..+.. ...||.|
T Consensus 94 ~~--~~~~----~~~~iG~~~i~l~~l~~~~~-----~~~W~~L 126 (127)
T cd04030 94 KS--FLSR----EKKLLGQVLIDLSDLDLSKG-----FTQWYDL 126 (127)
T ss_pred Cc--ccCC----CCceEEEEEEecccccccCC-----ccceEEC
Confidence 76 11 3 38999999999999865432 3468887
No 57
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.77 E-value=1.8e-17 Score=129.57 Aligned_cols=121 Identities=18% Similarity=0.298 Sum_probs=94.7
Q ss_pred EEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCC-----------cEEEeeeecCCCCCCee-eeEEEEEecCCCcEEEEE
Q 040360 11 TIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSF-----------DYCTTKVDESGGSHPSW-NEKLVIELPMHARFITVQ 78 (198)
Q Consensus 11 ~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~-----------~~~~T~v~~~~g~nP~W-NE~f~f~v~~~~~~L~~e 78 (198)
.+.|++++|++|+ .+.++++||||++.+.+.. ++++|++.+++ .||+| ||+|.|.+.. .+.|.|+
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~t-lnP~W~nE~f~f~v~~-~~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENT-INPVWHREQFVFVGLP-TDVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCC-CCCceEceEEEEEcCC-CCEEEEE
Confidence 3578999999998 5668999999999996421 36899999886 99999 9999999965 4689999
Q ss_pred EEeCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCC--CCccEEEEEEE
Q 040360 79 VQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAK--GDKNGIINVSV 140 (198)
Q Consensus 79 V~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~--Gk~~G~I~lsi 140 (198)
|+|++. .+. .+.+++||.+.|||+++..+.... ...++|+|...+ +..+|+|.|.+
T Consensus 79 V~D~~~---~~~-~~~~d~lG~~~i~l~~l~~~~~~~--~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 79 VKDKFA---KSR-PIIRRFLGKLSIPVQRLLERHAIG--DQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EEecCC---CCC-ccCCceEEEEEEEHHHhcccccCC--ceEEEEECCcCCCCCcEEEEEEEEe
Confidence 999754 221 011689999999999998775322 256789987643 46889998875
No 58
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.77 E-value=1.1e-17 Score=133.33 Aligned_cols=123 Identities=16% Similarity=0.202 Sum_probs=95.9
Q ss_pred EEEEEEEEeeCC--CCCCCCCcCCcEEEEEEC-C-C-CcEEEeeeecCCCCCCeeeeEEEEEecCC---------CcEEE
Q 040360 11 TIELTVLSGEDL--RIDRRLIKKNAFAIVQTD-T-S-FDYCTTKVDESGGSHPSWNEKLVIELPMH---------ARFIT 76 (198)
Q Consensus 11 ~LeVtVlsA~~L--~~~~~~~~~dpYvvv~~~-~-~-~~~~~T~v~~~~g~nP~WNE~f~f~v~~~---------~~~L~ 76 (198)
.++++|..|+++ ......+..||||++.+. + + .++.+|++.+++ .||+|||+|.|.++.. ...|.
T Consensus 3 ~~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~T-lnPvfNE~f~f~I~~~~~~~~R~l~~~~L~ 81 (155)
T cd08690 3 SIELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDT-NSPEYNESFKLNINRKHRSFQRVFKRHGLK 81 (155)
T ss_pred ceEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCC-CCCcccceEEEEeccccchhhhhccCCcEE
Confidence 468888888885 444556789999999971 1 1 478999999987 9999999999999654 34699
Q ss_pred EEEEeCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCccEEEEEEEEEeeeC
Q 040360 77 VQVQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDKNGIINVSVRSLKVA 146 (198)
Q Consensus 77 ~eV~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~~G~I~lsi~~f~~~ 146 (198)
|+|||++. ++. +|++||++.|+|..+..... ...+++|.+.....-|.|++.+| +..+
T Consensus 82 ~~V~d~~~--f~~----~D~~iG~~~i~L~~l~~~~~-----~~~~~~L~~~~k~~Gg~l~v~ir-~r~p 139 (155)
T cd08690 82 FEVYHKGG--FLR----SDKLLGTAQVKLEPLETKCE-----IHESVDLMDGRKATGGKLEVKVR-LREP 139 (155)
T ss_pred EEEEeCCC--ccc----CCCeeEEEEEEcccccccCc-----ceEEEEhhhCCCCcCCEEEEEEE-ecCC
Confidence 99999986 233 39999999999999965531 23599988644456789999999 7765
No 59
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.77 E-value=9e-18 Score=126.80 Aligned_cols=105 Identities=18% Similarity=0.244 Sum_probs=85.7
Q ss_pred cceEEEEEEEEeeCCCCCC-CCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEecCC---CcEEEEEEE
Q 040360 8 GYRTIELTVLSGEDLRIDR-RLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIELPMH---ARFITVQVQ 80 (198)
Q Consensus 8 ~~~~LeVtVlsA~~L~~~~-~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v~~~---~~~L~~eV~ 80 (198)
..+.|.|+|++|++|+..+ ..+..||||+|.+.+. ..+.+|++.+++ .||+|||+|.|.++.. ...|.|+|+
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t-~~P~wne~f~f~i~~~~l~~~~l~i~v~ 90 (123)
T cd08521 12 KTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNT-TNPVFNETLKYHISKSQLETRTLQLSVW 90 (123)
T ss_pred CCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCC-CCCcccceEEEeCCHHHhCCCEEEEEEE
Confidence 4578999999999998766 5678999999999642 146799998775 9999999999998752 468999999
Q ss_pred eCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEe
Q 040360 81 CKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRL 125 (198)
Q Consensus 81 ~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L 125 (198)
|++. .+ ++++||++.|+|.++..+.. ...||+|
T Consensus 91 d~~~---~~----~~~~iG~~~i~l~~l~~~~~-----~~~w~~l 123 (123)
T cd08521 91 HHDR---FG----RNTFLGEVEIPLDSWDLDSQ-----QSEWYPL 123 (123)
T ss_pred eCCC---Cc----CCceeeEEEEecccccccCC-----CccEEEC
Confidence 9887 55 38999999999999964431 3568876
No 60
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.76 E-value=1.6e-17 Score=124.22 Aligned_cols=111 Identities=17% Similarity=0.282 Sum_probs=83.5
Q ss_pred EEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecC---CCcEEEEEEEeCCCCCCC
Q 040360 12 IELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPM---HARFITVQVQCKSKSSSS 88 (198)
Q Consensus 12 LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~---~~~~L~~eV~~~~~~~~~ 88 (198)
|.|+|++|++|+.. +.+||||+|.+++ ...++|++.++ .||.|||+|.|.++. ....|.|.+++.+. .
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~-~~~~kT~~~~~--~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~---~ 72 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQ-VEVARTKTVEK--LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRS---K 72 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECC-EEeEecceEEC--CCCcccceEEEecCCccccEEEEEEEEEeccc---C
Confidence 88999999999865 6899999999987 44579998876 899999999999977 34567888887654 3
Q ss_pred CCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCC--CCccEEEEEEEEEe
Q 040360 89 GNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAK--GDKNGIINVSVRSL 143 (198)
Q Consensus 89 g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~--Gk~~G~I~lsi~~f 143 (198)
+ +.+|.++++|.++..+.. ...||+|...+ ++..|+|+|.++ |
T Consensus 73 ~------~~~~~g~v~l~~~~~~~~-----~~~w~~L~~~~~~~~~~G~l~l~~~-~ 117 (117)
T cd08383 73 D------RDIVIGKVALSKLDLGQG-----KDEWFPLTPVDPDSEVQGSVRLRAR-Y 117 (117)
T ss_pred C------CeeEEEEEEecCcCCCCc-----ceeEEECccCCCCCCcCceEEEEEE-C
Confidence 3 234455556655544321 34699997644 357999999998 5
No 61
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.76 E-value=1e-17 Score=126.86 Aligned_cols=106 Identities=21% Similarity=0.179 Sum_probs=85.3
Q ss_pred CCcceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEecC----CCcEEEEE
Q 040360 6 SSGYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIELPM----HARFITVQ 78 (198)
Q Consensus 6 ~m~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v~~----~~~~L~~e 78 (198)
+...+.|.|+|++|++|...+..+..||||+|.+.+. ..+++|++.+++ .||+|||+|.|.+.. ....|.|+
T Consensus 12 ~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t-~nP~wne~f~f~~~~~~~l~~~~l~~~ 90 (125)
T cd04031 12 DKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKT-LNPEWNQTFEYSNVRRETLKERTLEVT 90 (125)
T ss_pred eCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCC-CCCccccEEEEcccCHHHhCCCEEEEE
Confidence 3445789999999999987777788999999999752 256789999887 999999999998643 34689999
Q ss_pred EEeCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEe
Q 040360 79 VQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRL 125 (198)
Q Consensus 79 V~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L 125 (198)
|+|++. .+ ++++||++.++|++..... ...||+|
T Consensus 91 V~d~~~---~~----~~~~iG~~~i~l~~~~~~~------~~~W~~L 124 (125)
T cd04031 91 VWDYDR---DG----ENDFLGEVVIDLADALLDD------EPHWYPL 124 (125)
T ss_pred EEeCCC---CC----CCcEeeEEEEecccccccC------CcceEEC
Confidence 999887 55 3899999999999943221 1368887
No 62
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.76 E-value=2.9e-17 Score=129.75 Aligned_cols=122 Identities=19% Similarity=0.255 Sum_probs=95.8
Q ss_pred ceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEEeCCCCCCC
Q 040360 9 YRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQCKSKSSSS 88 (198)
Q Consensus 9 ~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~~~~~~~~~ 88 (198)
...|.|.|++|++|.. +.++||.|.+++ ....+|++..++ .||.|||.|.|........|+|.|+..+.. .
T Consensus 10 ~~sL~v~V~EAk~Lp~-----~~~~Y~~i~Ld~-~~vaRT~v~~~~-~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~--~ 80 (146)
T cd04013 10 ENSLKLWIIEAKGLPP-----KKRYYCELCLDK-TLYARTTSKLKT-DTLFWGEHFEFSNLPPVSVITVNLYRESDK--K 80 (146)
T ss_pred EEEEEEEEEEccCCCC-----cCCceEEEEECC-EEEEEEEEEcCC-CCCcceeeEEecCCCcccEEEEEEEEccCc--c
Confidence 4679999999999964 348999999999 444699999886 899999999998766567899999865431 1
Q ss_pred CCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCc----------cEEEEEEEEEeeeC
Q 040360 89 GNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDK----------NGIINVSVRSLKVA 146 (198)
Q Consensus 89 g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~----------~G~I~lsi~~f~~~ 146 (198)
++ ...+.+||.+.||+.++..+.. ...||+|...++++ .+.|+++++ |...
T Consensus 81 ~~-~~~~~~IG~V~Ip~~~l~~~~~-----ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~r-f~~~ 141 (146)
T cd04013 81 KK-KDKSQLIGTVNIPVTDVSSRQF-----VEKWYPVSTPKGNGKSGGKEGKGESPSIRIKAR-YQST 141 (146)
T ss_pred cc-ccCCcEEEEEEEEHHHhcCCCc-----ccEEEEeecCCCCCccccccccCCCCEEEEEEE-EEEe
Confidence 10 0128899999999999986642 34799999976553 368999999 8753
No 63
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.76 E-value=9.8e-18 Score=128.85 Aligned_cols=105 Identities=17% Similarity=0.163 Sum_probs=86.1
Q ss_pred ceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCC----cEEEeeeecCCCCCCeeeeEEEEEecC---CCcEEEEEEEe
Q 040360 9 YRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSF----DYCTTKVDESGGSHPSWNEKLVIELPM---HARFITVQVQC 81 (198)
Q Consensus 9 ~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~----~~~~T~v~~~~g~nP~WNE~f~f~v~~---~~~~L~~eV~~ 81 (198)
.+.|.|+|++|+||+..+..+..||||++.+-++. .+++|++.+++ .||+|||+|.|+++. ....|.|.|++
T Consensus 13 ~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t-~nPvfnE~F~f~v~~~~L~~~~L~~~V~~ 91 (124)
T cd08680 13 DSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQ-DKPVFNEVFRVPISSTKLYQKTLQVDVCS 91 (124)
T ss_pred CCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCC-CCCccccEEEEECCHHHhhcCEEEEEEEe
Confidence 46899999999999876666789999999998752 37899999886 999999999999976 35799999999
Q ss_pred CCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEe
Q 040360 82 KSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRL 125 (198)
Q Consensus 82 ~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L 125 (198)
.+. ++ ++++||++.|+|.++..... ....||.|
T Consensus 92 ~~~---~~----~~~~lG~~~i~L~~~~~~~~----~~~~Wy~l 124 (124)
T cd08680 92 VGP---DQ----QEECLGGAQISLADFESSEE----MSTKWYNL 124 (124)
T ss_pred CCC---CC----ceeEEEEEEEEhhhccCCCc----cccccccC
Confidence 887 55 38999999999999944321 13457765
No 64
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.75 E-value=2.7e-17 Score=124.79 Aligned_cols=106 Identities=20% Similarity=0.237 Sum_probs=86.3
Q ss_pred cceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC-CcEEEeeeecCCCCCCeeeeEEEEEe-cC---CCcEEEEEEEeC
Q 040360 8 GYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS-FDYCTTKVDESGGSHPSWNEKLVIEL-PM---HARFITVQVQCK 82 (198)
Q Consensus 8 ~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~-~~~~~T~v~~~~g~nP~WNE~f~f~v-~~---~~~~L~~eV~~~ 82 (198)
..++|.|+|++|++|+..+..+..||||+|.+.+. ..+.+|++.+++ .||.|||+|.|.+ +. ....|.|+|+|+
T Consensus 14 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t-~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~ 92 (125)
T cd08386 14 QESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKN-LNPHWNETFLFEGFPYEKLQQRVLYLQVLDY 92 (125)
T ss_pred CCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCC-CCCccceeEEEcccCHHHhCCCEEEEEEEeC
Confidence 45789999999999987777788999999999532 467899999886 9999999999984 32 235799999999
Q ss_pred CCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEee
Q 040360 83 SKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLR 126 (198)
Q Consensus 83 ~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~ 126 (198)
+. ++ ++++||++.|+|+++..+.. ...||.|.
T Consensus 93 d~---~~----~~~~iG~~~i~l~~l~~~~~-----~~~W~~l~ 124 (125)
T cd08386 93 DR---FS----RNDPIGEVSLPLNKVDLTEE-----QTFWKDLK 124 (125)
T ss_pred CC---Cc----CCcEeeEEEEecccccCCCC-----cceEEecC
Confidence 87 65 38999999999999975431 35788874
No 65
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.75 E-value=3e-17 Score=126.30 Aligned_cols=96 Identities=11% Similarity=0.150 Sum_probs=79.4
Q ss_pred cceEEEEEEEEeeCCCCCCCC-CcCCcEEEEEECCC-CcEEEeeeecCCCCCCeeeeEEEE-EecC---CCcEEEEEEEe
Q 040360 8 GYRTIELTVLSGEDLRIDRRL-IKKNAFAIVQTDTS-FDYCTTKVDESGGSHPSWNEKLVI-ELPM---HARFITVQVQC 81 (198)
Q Consensus 8 ~~~~LeVtVlsA~~L~~~~~~-~~~dpYvvv~~~~~-~~~~~T~v~~~~g~nP~WNE~f~f-~v~~---~~~~L~~eV~~ 81 (198)
....|.|+|++|++|+..+.. +..||||+|.+.+. .++.+|++++++ .||+|||+|.| .++. ....|.|+|+|
T Consensus 14 ~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t-~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d 92 (128)
T cd08388 14 EKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKT-RNPVYDETFTFYGIPYNQLQDLSLHFAVLS 92 (128)
T ss_pred CCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCC-CCCceeeEEEEcccCHHHhCCCEEEEEEEE
Confidence 347899999999999876655 78999999999753 356799999886 99999999999 4553 23579999999
Q ss_pred CCCCCCCCCCCCCCceeEEEEEeCccccCC
Q 040360 82 KSKSSSSGNNNNHNKIVGFARIPVSDFIGG 111 (198)
Q Consensus 82 ~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~ 111 (198)
++. ++ +|++||++.|+|+++.-.
T Consensus 93 ~d~---~~----~d~~lG~~~i~L~~l~~~ 115 (128)
T cd08388 93 FDR---YS----RDDVIGEVVCPLAGADLL 115 (128)
T ss_pred cCC---CC----CCceeEEEEEeccccCCC
Confidence 887 55 399999999999998644
No 66
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.75 E-value=1.6e-17 Score=127.07 Aligned_cols=105 Identities=15% Similarity=0.160 Sum_probs=85.9
Q ss_pred cceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC-CcEEEeeeecCCCCCCeeeeEEEEE-ecC---CCcEEEEEEEeC
Q 040360 8 GYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS-FDYCTTKVDESGGSHPSWNEKLVIE-LPM---HARFITVQVQCK 82 (198)
Q Consensus 8 ~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~-~~~~~T~v~~~~g~nP~WNE~f~f~-v~~---~~~~L~~eV~~~ 82 (198)
..+.|.|+|++|+||...+..+..||||.+.+.++ .++.+|+++++ .||+|||+|.|+ ++. ....|.|+|+++
T Consensus 14 ~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~--~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~ 91 (124)
T cd08389 14 SARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG--PNPVFNETFTFSRVEPEELNNMALRFRLYGV 91 (124)
T ss_pred CCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC--CCCcccCEEEECCCCHHHhccCEEEEEEEEC
Confidence 45789999999999987776778899999888664 46788998764 899999999998 654 357899999999
Q ss_pred CCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEee
Q 040360 83 SKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLR 126 (198)
Q Consensus 83 ~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~ 126 (198)
+. ++ ++++||++.|+|+++..+. ....||.|.
T Consensus 92 ~~---~~----~~~~lG~~~i~L~~l~~~~-----~~~~w~~L~ 123 (124)
T cd08389 92 ER---MR----KERLIGEKVVPLSQLNLEG-----ETTVWLTLE 123 (124)
T ss_pred CC---cc----cCceEEEEEEeccccCCCC-----CceEEEeCC
Confidence 87 66 3899999999999996543 245788874
No 67
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.74 E-value=3.3e-17 Score=123.85 Aligned_cols=106 Identities=14% Similarity=0.204 Sum_probs=86.9
Q ss_pred cceEEEEEEEEeeCCCCCC-CCCcCCcEEEEEECCC-CcEEEeeeecCCCCCCeeeeEEEEEecCC---CcEEEEEEEeC
Q 040360 8 GYRTIELTVLSGEDLRIDR-RLIKKNAFAIVQTDTS-FDYCTTKVDESGGSHPSWNEKLVIELPMH---ARFITVQVQCK 82 (198)
Q Consensus 8 ~~~~LeVtVlsA~~L~~~~-~~~~~dpYvvv~~~~~-~~~~~T~v~~~~g~nP~WNE~f~f~v~~~---~~~L~~eV~~~ 82 (198)
..+.|.|+|++|++|+..+ ..+..||||+|.+.++ ....+|++.+++ .||+|||+|.|+++.. ...|.|+|||+
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~-~~P~wne~f~f~i~~~~l~~~~l~i~v~d~ 90 (123)
T cd08390 12 EEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKT-QNPNFDETFVFQVSFKELQRRTLRLSVYDV 90 (123)
T ss_pred CCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCC-CCCccceEEEEEcCHHHhcccEEEEEEEEC
Confidence 4578999999999998766 5778999999999542 356789999886 9999999999999753 46899999998
Q ss_pred CCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEee
Q 040360 83 SKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLR 126 (198)
Q Consensus 83 ~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~ 126 (198)
+. .+ ++++||++.|+|.++..... ...|++|.
T Consensus 91 ~~---~~----~~~~iG~~~i~L~~l~~~~~-----~~~w~~L~ 122 (123)
T cd08390 91 DR---FS----RHCIIGHVLFPLKDLDLVKG-----GVVWRDLE 122 (123)
T ss_pred Cc---CC----CCcEEEEEEEeccceecCCC-----ceEEEeCC
Confidence 87 55 38999999999999976531 34788874
No 68
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.74 E-value=2.3e-17 Score=130.89 Aligned_cols=106 Identities=18% Similarity=0.200 Sum_probs=84.9
Q ss_pred EEEEEEEEeeCCCCCCCC--------------CcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEec--CCCcE
Q 040360 11 TIELTVLSGEDLRIDRRL--------------IKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELP--MHARF 74 (198)
Q Consensus 11 ~LeVtVlsA~~L~~~~~~--------------~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~--~~~~~ 74 (198)
+|.|+|++|+||+..+.. +..||||+|.+++ ++.+|++++++ .||+|||+|.|++. .....
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g--~~~kT~v~~~t-~nPvWNE~f~f~v~~p~~~~~ 77 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAG--QKVKTSVKKNS-YNPEWNEQIVFPEMFPPLCER 77 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECC--EeeecceEcCC-CCCCcceEEEEEeeCCCcCCE
Confidence 489999999999865533 3689999999998 78899999986 99999999999864 33569
Q ss_pred EEEEEEeCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCC---ceEeEEEEeeC
Q 040360 75 ITVQVQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPEN---YLHFLSYRLRN 127 (198)
Q Consensus 75 L~~eV~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~---~~~~~sy~L~~ 127 (198)
|.|+|+|++. .+ +|++||.+.|+|.++..... +. .....||.|.+
T Consensus 78 l~~~v~D~d~---~~----~dd~iG~~~l~l~~l~~~~~-~~~lp~~~p~W~~lyg 125 (151)
T cd04018 78 IKIQIRDWDR---VG----NDDVIGTHFIDLSKISNSGD-EGFLPTFGPSFVNLYG 125 (151)
T ss_pred EEEEEEECCC---CC----CCCEEEEEEEeHHHhccCCc-cccCCccCceEEEeec
Confidence 9999999987 55 39999999999999876541 11 12346888864
No 69
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.74 E-value=2.9e-17 Score=123.11 Aligned_cols=102 Identities=20% Similarity=0.243 Sum_probs=83.6
Q ss_pred CCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCC-CcEEEEEEEeCCCCCCCCCCCCCCceeEEEEEe
Q 040360 26 RRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMH-ARFITVQVQCKSKSSSSGNNNNHNKIVGFARIP 104 (198)
Q Consensus 26 ~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~-~~~L~~eV~~~~~~~~~g~~~~~d~~IG~a~Ip 104 (198)
...|++||||+|.+++ ....+|++++++ .||+|||.|.|.+.+. .+.|.|+|++++. ++ |++||++.|+
T Consensus 8 ~~~G~~dPYv~v~v~~-~~~~kT~v~~~t-~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~---~~-----d~~iG~~~v~ 77 (111)
T cd04052 8 SKTGLLSPYAELYLNG-KLVYTTRVKKKT-NNPSWNASTEFLVTDRRKSRVTVVVKDDRD---RH-----DPVLGSVSIS 77 (111)
T ss_pred ccCCCCCceEEEEECC-EEEEEEeeeccC-CCCccCCceEEEecCcCCCEEEEEEEECCC---CC-----CCeEEEEEec
Confidence 3568899999999987 346799998775 9999999999999763 5789999999887 55 9999999999
Q ss_pred CccccCCCCCCCceEeEEEEeeCCCCCccEEEEEEEEEeee
Q 040360 105 VSDFIGGYAPENYLHFLSYRLRNAKGDKNGIINVSVRSLKV 145 (198)
Q Consensus 105 L~~l~~~~~~~~~~~~~sy~L~~~~Gk~~G~I~lsi~~f~~ 145 (198)
|+++..... ....||.|.+ ++.|+|++++. |.+
T Consensus 78 L~~l~~~~~----~~~~w~~L~~---~~~G~i~~~~~-~~p 110 (111)
T cd04052 78 LNDLIDATS----VGQQWFPLSG---NGQGRIRISAL-WKP 110 (111)
T ss_pred HHHHHhhhh----ccceeEECCC---CCCCEEEEEEE-Eec
Confidence 999975421 1247999863 67899999999 764
No 70
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.74 E-value=2.6e-17 Score=127.13 Aligned_cols=91 Identities=15% Similarity=0.190 Sum_probs=77.8
Q ss_pred cceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEe-c-CCCcEEEEEEEeCCCC
Q 040360 8 GYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIEL-P-MHARFITVQVQCKSKS 85 (198)
Q Consensus 8 ~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v-~-~~~~~L~~eV~~~~~~ 85 (198)
..++|+|+|++|++|+. +..+..||||+|.+++ ++++|++.+++ .||+|||+|.|.+ . .....|.|+|||++.
T Consensus 26 ~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~--~~~kT~vi~~t-~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~- 100 (127)
T cd04032 26 GLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGG--QEKRTEVIWNN-NNPRWNATFDFGSVELSPGGKLRFEVWDRDN- 100 (127)
T ss_pred CcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECC--ccccCceecCC-CCCcCCCEEEEecccCCCCCEEEEEEEeCCC-
Confidence 34799999999999984 5567899999999988 68899999886 9999999999974 2 235799999999987
Q ss_pred CCCCCCCCCCceeEEEEEeCcccc
Q 040360 86 SSSGNNNNHNKIVGFARIPVSDFI 109 (198)
Q Consensus 86 ~~~g~~~~~d~~IG~a~IpL~~l~ 109 (198)
+++ |++||++.++|....
T Consensus 101 --~s~----dd~IG~~~i~l~~~~ 118 (127)
T cd04032 101 --GWD----DDLLGTCSVVPEAGV 118 (127)
T ss_pred --CCC----CCeeEEEEEEecCCc
Confidence 653 999999999998554
No 71
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.72 E-value=4.9e-17 Score=125.52 Aligned_cols=95 Identities=18% Similarity=0.234 Sum_probs=81.3
Q ss_pred ceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC-----CcEEEeeeecCCCCCCeeeeEEEEEecCC-----CcEEEEE
Q 040360 9 YRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS-----FDYCTTKVDESGGSHPSWNEKLVIELPMH-----ARFITVQ 78 (198)
Q Consensus 9 ~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~-----~~~~~T~v~~~~g~nP~WNE~f~f~v~~~-----~~~L~~e 78 (198)
.+.|.|+|++|++|+..+..+..||||+|.+.+. ..+++|++.+++ .||+|||+|.|.+... ...|.|+
T Consensus 15 ~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t-~nP~wnE~f~f~i~~~~~~~~~~~l~~~ 93 (133)
T cd04009 15 EQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKT-LFPLFDESFEFNVPPEQCSVEGALLLFT 93 (133)
T ss_pred CCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCC-CCCccCCEEEEEechhhcccCCCEEEEE
Confidence 4789999999999987777788999999999742 247899999887 9999999999998652 4589999
Q ss_pred EEeCCCCCCCCCCCCCCceeEEEEEeCccccCC
Q 040360 79 VQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGG 111 (198)
Q Consensus 79 V~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~ 111 (198)
|||++. ++ ++++||++.|+|.++...
T Consensus 94 V~d~d~---~~----~d~~iG~~~i~l~~l~~~ 119 (133)
T cd04009 94 VKDYDL---LG----SNDFEGEAFLPLNDIPGV 119 (133)
T ss_pred EEecCC---CC----CCcEeEEEEEeHHHCCcc
Confidence 999987 56 389999999999999854
No 72
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.72 E-value=8.8e-17 Score=125.20 Aligned_cols=104 Identities=24% Similarity=0.302 Sum_probs=85.7
Q ss_pred EEEEEEEeeCCCCCCCCCcCCcEEEEEECCC--CcEEEeeeecCCCCCCeeeeEEEEEecCC----------------Cc
Q 040360 12 IELTVLSGEDLRIDRRLIKKNAFAIVQTDTS--FDYCTTKVDESGGSHPSWNEKLVIELPMH----------------AR 73 (198)
Q Consensus 12 LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~--~~~~~T~v~~~~g~nP~WNE~f~f~v~~~----------------~~ 73 (198)
|.|+|++|++|+.. ..+..||||+|.++.+ ..+++|++++++ .||.|||+|.|.+... ..
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t-~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~ 78 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKT-NNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKS 78 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCC-CCCCcceEEEEEcccccccccccccccccccccc
Confidence 68999999999876 6788999999999832 367899999886 9999999999998653 45
Q ss_pred EEEEEEEeCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCC
Q 040360 74 FITVQVQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAK 129 (198)
Q Consensus 74 ~L~~eV~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~ 129 (198)
.|.|+|+|++. .+ ++++||++.|+|.++..... ...||.|....
T Consensus 79 ~l~i~V~d~~~---~~----~~~~IG~~~i~l~~l~~~~~-----~~~W~~L~~~~ 122 (137)
T cd08675 79 ELRVELWHASM---VS----GDDFLGEVRIPLQGLQQAGS-----HQAWYFLQPRE 122 (137)
T ss_pred EEEEEEEcCCc---Cc----CCcEEEEEEEehhhccCCCc-----ccceEecCCcC
Confidence 89999999887 55 39999999999999875432 34699988743
No 73
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.71 E-value=8.5e-17 Score=128.79 Aligned_cols=109 Identities=13% Similarity=0.044 Sum_probs=87.2
Q ss_pred CCcceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEec-C---CCcEEEEE
Q 040360 6 SSGYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIELP-M---HARFITVQ 78 (198)
Q Consensus 6 ~m~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v~-~---~~~~L~~e 78 (198)
....+.|.|+|++|++|+..+..+..||||+|.+.++ ..+++|++++++ .||.|||+|.|.+. . ....|.|+
T Consensus 23 ~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t-~nP~WnE~f~f~~~~~~~l~~~~L~i~ 101 (162)
T cd04020 23 KPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKS-VNPVWNHTFVYDGVSPEDLSQACLELT 101 (162)
T ss_pred CCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCC-CCCCCCCEEEEecCCHHHhCCCEEEEE
Confidence 3466899999999999987777788999999998542 357899999887 99999999999853 2 23589999
Q ss_pred EEeCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeC
Q 040360 79 VQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRN 127 (198)
Q Consensus 79 V~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~ 127 (198)
|||++. ++ ++++||++.|++.++..... ...||.|+.
T Consensus 102 V~d~d~---~~----~d~~lG~v~i~l~~~~~~~~-----~~~w~~~~~ 138 (162)
T cd04020 102 VWDHDK---LS----SNDFLGGVRLGLGTGKSYGQ-----AVDWMDSTG 138 (162)
T ss_pred EEeCCC---CC----CCceEEEEEEeCCccccCCC-----ccccccCCh
Confidence 999987 56 38999999999999864321 235776654
No 74
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.71 E-value=2.1e-17 Score=126.27 Aligned_cols=111 Identities=15% Similarity=0.191 Sum_probs=88.8
Q ss_pred CCcceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEecCC---CcEEEEEE
Q 040360 6 SSGYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIELPMH---ARFITVQV 79 (198)
Q Consensus 6 ~m~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v~~~---~~~L~~eV 79 (198)
.+..+.|+|+|++|++|+..+..+..||||++.+.+. ..+++|++.+++ .||.|||+|.|.++.. ...|.|+|
T Consensus 10 ~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~-~~P~wne~f~f~i~~~~l~~~~l~~~v 88 (134)
T cd00276 10 LPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGT-LNPVFNEAFSFDVPAEQLEEVSLVITV 88 (134)
T ss_pred eCCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecC-CCCeeeeeEEEECCHHHhCCcEEEEEE
Confidence 4456899999999999987777788999999999763 135689988875 8999999999999764 47899999
Q ss_pred EeCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCC
Q 040360 80 QCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGD 131 (198)
Q Consensus 80 ~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk 131 (198)
+|++. .+ ++++||.+.|+|.+ .+.. ...||+|.+..++
T Consensus 89 ~d~~~---~~----~~~~lG~~~i~l~~--~~~~-----~~~W~~l~~~~~~ 126 (134)
T cd00276 89 VDKDS---VG----RNEVIGQVVLGPDS--GGEE-----LEHWNEMLASPRK 126 (134)
T ss_pred EecCC---CC----CCceeEEEEECCCC--CCcH-----HHHHHHHHhCCCC
Confidence 99887 45 38999999999999 2221 2358888765444
No 75
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.71 E-value=1.3e-16 Score=126.92 Aligned_cols=105 Identities=14% Similarity=0.213 Sum_probs=86.1
Q ss_pred CCCCCcceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCC---------------------------cEEEeeeecCCC
Q 040360 3 EKSSSGYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSF---------------------------DYCTTKVDESGG 55 (198)
Q Consensus 3 ~~~~m~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~---------------------------~~~~T~v~~~~g 55 (198)
+++.+....|.|+|++|++|...+..+.+||||+|.+.+.. ..++|++.+++
T Consensus 21 ~~~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~t- 99 (153)
T cd08676 21 REAEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQT- 99 (153)
T ss_pred HhcCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCC-
Confidence 46777889999999999999887888899999999997421 23689998886
Q ss_pred CCCeeeeEEEEEecC-CCcEEEEEEEeCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEe
Q 040360 56 SHPSWNEKLVIELPM-HARFITVQVQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRL 125 (198)
Q Consensus 56 ~nP~WNE~f~f~v~~-~~~~L~~eV~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L 125 (198)
.||.|||+|.|.+.. ....|.|+|||++ +++||.+.|+|+++.... ...||+|
T Consensus 100 lnP~WnE~F~f~v~~~~~~~L~i~V~D~d-----------d~~IG~v~i~l~~l~~~~------~d~W~~L 153 (153)
T cd08676 100 LNPVWNETFRFEVEDVSNDQLHLDIWDHD-----------DDFLGCVNIPLKDLPSCG------LDSWFKL 153 (153)
T ss_pred CCCccccEEEEEeccCCCCEEEEEEEecC-----------CCeEEEEEEEHHHhCCCC------CCCeEeC
Confidence 999999999999965 3578999999853 569999999999998432 1358876
No 76
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.70 E-value=1.8e-16 Score=121.52 Aligned_cols=105 Identities=18% Similarity=0.168 Sum_probs=87.9
Q ss_pred eEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEecCC--CcEEEEEEEeCCC
Q 040360 10 RTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIELPMH--ARFITVQVQCKSK 84 (198)
Q Consensus 10 ~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v~~~--~~~L~~eV~~~~~ 84 (198)
+.|.|+|++|++|+..+..+..||||+|.+.+. ...++|++.+++ .||.|||+|.|.+... ...|.|+|||++.
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~-~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~ 91 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKT-LNPVWNETFTFDLKPADKDRRLSIEVWDWDR 91 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCC-CCCCccceEEEeCCchhcCCEEEEEEEECCC
Confidence 789999999999987666778999999999742 357899998886 9999999999998753 4689999999886
Q ss_pred CCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCC
Q 040360 85 SSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNA 128 (198)
Q Consensus 85 ~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~ 128 (198)
.+ ++++||.+.++|+++.... ...||+|.+.
T Consensus 92 ---~~----~~~~iG~~~~~l~~l~~~~------~~~w~~L~~~ 122 (131)
T cd04026 92 ---TT----RNDFMGSLSFGVSELIKMP------VDGWYKLLNQ 122 (131)
T ss_pred ---CC----CcceeEEEEEeHHHhCcCc------cCceEECcCc
Confidence 55 3899999999999998541 3469999874
No 77
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.70 E-value=7.6e-17 Score=124.67 Aligned_cols=113 Identities=14% Similarity=0.105 Sum_probs=89.0
Q ss_pred cceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCC---cEEEeeeecCCCCCCeeeeEEEEEecC---CCcEEEEEEEe
Q 040360 8 GYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSF---DYCTTKVDESGGSHPSWNEKLVIELPM---HARFITVQVQC 81 (198)
Q Consensus 8 ~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~---~~~~T~v~~~~g~nP~WNE~f~f~v~~---~~~~L~~eV~~ 81 (198)
..+.|.|+|++|++|...+..+..||||++.+.+.. .+.+|++.+++ .||.|||+|.|.++. ....|.|+|+|
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t-~nP~w~e~F~f~v~~~~~~~~~l~~~v~d 91 (136)
T cd08404 13 TTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCT-LNPVFNESFVFDIPSEELEDISVEFLVLD 91 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCC-CCCccCceEEEECCHHHhCCCEEEEEEEE
Confidence 357899999999999877778899999999996521 35688888876 999999999999975 34579999999
Q ss_pred CCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCccEE
Q 040360 82 KSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDKNGI 135 (198)
Q Consensus 82 ~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~~G~ 135 (198)
++. ++ ++++||++.|++.+ . +. + ...|+.|.+..|++.+.
T Consensus 92 ~d~---~~----~~~~iG~~~~~~~~-~-~~--~---~~~w~~l~~~~~~~i~~ 131 (136)
T cd08404 92 SDR---VT----KNEVIGRLVLGPKA-S-GS--G---GHHWKEVCNPPRRQIAE 131 (136)
T ss_pred CCC---CC----CCccEEEEEECCcC-C-Cc--h---HHHHHHHHhCCCCeeeE
Confidence 987 66 38999999999998 2 21 1 23578877666665543
No 78
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.69 E-value=2e-16 Score=121.54 Aligned_cols=109 Identities=13% Similarity=0.115 Sum_probs=86.5
Q ss_pred ceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEecCC---CcEEEEEEEeC
Q 040360 9 YRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIELPMH---ARFITVQVQCK 82 (198)
Q Consensus 9 ~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v~~~---~~~L~~eV~~~ 82 (198)
.+.|.|+|++|++|...+..+..||||+|.+.++ ..+.+|++.+++ .||+|||+|.|.++.. ...|.|+|+|+
T Consensus 12 ~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t-~nP~wne~f~f~~~~~~l~~~~l~~~V~d~ 90 (133)
T cd08384 12 RRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKT-LNPEFNEEFFYDIKHSDLAKKTLEITVWDK 90 (133)
T ss_pred CCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEecc-CCCCcccEEEEECCHHHhCCCEEEEEEEeC
Confidence 4789999999999987777788999999999753 246799999876 9999999999998753 46899999998
Q ss_pred CCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCc
Q 040360 83 SKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDK 132 (198)
Q Consensus 83 ~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~ 132 (198)
+. .+ ++++||++.|++.+. +. . ...||++....+++
T Consensus 91 d~---~~----~~~~lG~~~i~l~~~--~~---~--~~~W~~~l~~~~~~ 126 (133)
T cd08384 91 DI---GK----SNDYIGGLQLGINAK--GE---R--LRHWLDCLKNPDKK 126 (133)
T ss_pred CC---CC----CccEEEEEEEecCCC--Cc---h--HHHHHHHHhCCCCC
Confidence 86 55 389999999999852 21 1 23588776544443
No 79
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.69 E-value=4.3e-16 Score=119.04 Aligned_cols=91 Identities=11% Similarity=0.134 Sum_probs=76.5
Q ss_pred EEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecC-CCcEEEEEEEeCCCCCCCCC
Q 040360 12 IELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPM-HARFITVQVQCKSKSSSSGN 90 (198)
Q Consensus 12 LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~-~~~~L~~eV~~~~~~~~~g~ 90 (198)
|.|+|++|++|+..+..++.||||+|.+++.....+|++.+++ .||+|||+|.|.+.. ....|.|+|||++. .+
T Consensus 2 lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t-~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~---~~- 76 (124)
T cd04037 2 VRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNT-LNPVFGKMFELEATLPGNSILKISVMDYDL---LG- 76 (124)
T ss_pred EEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECC-CCCccceEEEEEecCCCCCEEEEEEEECCC---CC-
Confidence 7899999999988777889999999999872223577777775 999999999998753 35789999999987 65
Q ss_pred CCCCCceeEEEEEeCccccC
Q 040360 91 NNNHNKIVGFARIPVSDFIG 110 (198)
Q Consensus 91 ~~~~d~~IG~a~IpL~~l~~ 110 (198)
+|++||++.|+|.+..-
T Consensus 77 ---~dd~iG~~~i~l~~~~~ 93 (124)
T cd04037 77 ---SDDLIGETVIDLEDRFF 93 (124)
T ss_pred ---CCceeEEEEEeeccccc
Confidence 38999999999998763
No 80
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.68 E-value=6.8e-16 Score=117.03 Aligned_cols=96 Identities=16% Similarity=0.222 Sum_probs=80.2
Q ss_pred CcceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEE-ecC---CCcEEEEEE
Q 040360 7 SGYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIE-LPM---HARFITVQV 79 (198)
Q Consensus 7 m~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~-v~~---~~~~L~~eV 79 (198)
...+.|+|+|++|++|...+..+..||||++.+.+. ..+.+|++.+++ .||.|||+|.|. ++. ....|.|+|
T Consensus 12 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~-~~P~Wne~f~f~~~~~~~~~~~~l~~~v 90 (123)
T cd04035 12 PANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKT-RNPEFNETLTYYGITEEDIQRKTLRLLV 90 (123)
T ss_pred CCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCC-CCCCccceEEEcCCCHHHhCCCEEEEEE
Confidence 345789999999999987776788999999998542 247899999886 999999999996 432 246899999
Q ss_pred EeCCCCCCCCCCCCCCceeEEEEEeCccccCC
Q 040360 80 QCKSKSSSSGNNNNHNKIVGFARIPVSDFIGG 111 (198)
Q Consensus 80 ~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~ 111 (198)
||++. .+ +++||++.++|++|..+
T Consensus 91 ~d~~~---~~-----~~~iG~~~i~l~~l~~~ 114 (123)
T cd04035 91 LDEDR---FG-----NDFLGETRIPLKKLKPN 114 (123)
T ss_pred EEcCC---cC-----CeeEEEEEEEcccCCCC
Confidence 99887 45 89999999999999865
No 81
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.68 E-value=3e-16 Score=122.77 Aligned_cols=92 Identities=20% Similarity=0.321 Sum_probs=77.0
Q ss_pred cceEEEEEEEEeeCCCCCC--CCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEecCC---CcEEEEEE
Q 040360 8 GYRTIELTVLSGEDLRIDR--RLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIELPMH---ARFITVQV 79 (198)
Q Consensus 8 ~~~~LeVtVlsA~~L~~~~--~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v~~~---~~~L~~eV 79 (198)
..+.|.|+|++|+||...+ ..+..||||+|.+.++ ..+.+|++.+++ .||+|||.|.|.++.+ ...|.|+|
T Consensus 13 ~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t-~nPvfNE~f~F~v~~~~L~~~~L~~~V 91 (138)
T cd08407 13 AANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHK-INPVWNEMIMFELPSELLAASSVELEV 91 (138)
T ss_pred CCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCC-CCCccccEEEEECCHHHhCccEEEEEE
Confidence 3478999999999998655 2344899999999874 236689999886 9999999999999863 46899999
Q ss_pred EeCCCCCCCCCCCCCCceeEEEEEeCcc
Q 040360 80 QCKSKSSSSGNNNNHNKIVGFARIPVSD 107 (198)
Q Consensus 80 ~~~~~~~~~g~~~~~d~~IG~a~IpL~~ 107 (198)
+|++. ++ ++++||.+.+++..
T Consensus 92 ~d~d~---~~----~~d~iG~v~lg~~~ 112 (138)
T cd08407 92 LNQDS---PG----QSLPLGRCSLGLHT 112 (138)
T ss_pred EeCCC---Cc----CcceeceEEecCcC
Confidence 99987 66 49999999999974
No 82
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.68 E-value=2.5e-16 Score=121.60 Aligned_cols=93 Identities=14% Similarity=0.209 Sum_probs=77.8
Q ss_pred cceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEecCC---CcEEEEEEEe
Q 040360 8 GYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIELPMH---ARFITVQVQC 81 (198)
Q Consensus 8 ~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v~~~---~~~L~~eV~~ 81 (198)
..+.|+|+|++|++|+..+..+..||||+|.+.+. ..+++|++.+++ .||.|||+|.|.++.. ...|.|+|+|
T Consensus 13 ~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t-~nP~wne~f~f~i~~~~l~~~~l~~~v~d 91 (136)
T cd08402 13 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRT-LNPYYNESFSFEVPFEQIQKVHLIVTVLD 91 (136)
T ss_pred CCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCC-CCCcccceEEEECCHHHhCCCEEEEEEEe
Confidence 34789999999999987777788999999999642 245689888776 9999999999998753 2489999999
Q ss_pred CCCCCCCCCCCCCCceeEEEEEeCccc
Q 040360 82 KSKSSSSGNNNNHNKIVGFARIPVSDF 108 (198)
Q Consensus 82 ~~~~~~~g~~~~~d~~IG~a~IpL~~l 108 (198)
++. +++ |++||++.|++...
T Consensus 92 ~~~---~~~----~~~iG~~~i~~~~~ 111 (136)
T cd08402 92 YDR---IGK----NDPIGKVVLGCNAT 111 (136)
T ss_pred CCC---CCC----CceeEEEEECCccC
Confidence 987 663 89999999999764
No 83
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.68 E-value=3.4e-16 Score=122.08 Aligned_cols=91 Identities=19% Similarity=0.274 Sum_probs=77.1
Q ss_pred ceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEecC---CCcEEEEEEEeC
Q 040360 9 YRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIELPM---HARFITVQVQCK 82 (198)
Q Consensus 9 ~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v~~---~~~~L~~eV~~~ 82 (198)
...|.|+|++|++|...+..+..||||+|.+.++ ..+.+|++.+++ .||+|||+|.|.++. ....|.|+|+|.
T Consensus 14 ~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t-~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~ 92 (136)
T cd08406 14 AERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDD-TNPIFNEAMIFSVPAIVLQDLSLRVTVAES 92 (136)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCC-CCCeeceeEEEECCHHHhCCcEEEEEEEeC
Confidence 4689999999999987777788999999999763 136689999887 999999999999975 357899999999
Q ss_pred CCCCCCCCCCCCCceeEEEEEeCcc
Q 040360 83 SKSSSSGNNNNHNKIVGFARIPVSD 107 (198)
Q Consensus 83 ~~~~~~g~~~~~d~~IG~a~IpL~~ 107 (198)
+. ++ ++++||++.|+...
T Consensus 93 d~---~~----~~~~iG~v~lg~~~ 110 (136)
T cd08406 93 TE---DG----KTPNVGHVIIGPAA 110 (136)
T ss_pred CC---CC----CCCeeEEEEECCCC
Confidence 87 55 38999999998764
No 84
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.68 E-value=3.3e-16 Score=120.97 Aligned_cols=93 Identities=13% Similarity=0.208 Sum_probs=78.5
Q ss_pred cceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEecC---CCcEEEEEEEe
Q 040360 8 GYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIELPM---HARFITVQVQC 81 (198)
Q Consensus 8 ~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v~~---~~~~L~~eV~~ 81 (198)
..++|.|+|++|++|...+..+..||||+|.+.+. ..+++|++.+++ .||.|||+|.|.++. .+..|.|+|+|
T Consensus 13 ~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t-~~P~wne~F~f~i~~~~~~~~~l~~~v~d 91 (136)
T cd08405 13 TANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRT-LNPVFNESFIFNIPLERLRETTLIITVMD 91 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCC-CCCcccceEEEeCCHHHhCCCEEEEEEEE
Confidence 45789999999999987777789999999998431 245789998876 999999999999874 24689999999
Q ss_pred CCCCCCCCCCCCCCceeEEEEEeCccc
Q 040360 82 KSKSSSSGNNNNHNKIVGFARIPVSDF 108 (198)
Q Consensus 82 ~~~~~~~g~~~~~d~~IG~a~IpL~~l 108 (198)
++. ++ ++++||++.|++.+.
T Consensus 92 ~~~---~~----~~~~lG~~~i~~~~~ 111 (136)
T cd08405 92 KDR---LS----RNDLIGKIYLGWKSG 111 (136)
T ss_pred CCC---CC----CCcEeEEEEECCccC
Confidence 987 66 389999999999986
No 85
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.68 E-value=4.1e-16 Score=120.15 Aligned_cols=94 Identities=19% Similarity=0.299 Sum_probs=78.2
Q ss_pred CCCcceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEecCC---CcEEEEE
Q 040360 5 SSSGYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIELPMH---ARFITVQ 78 (198)
Q Consensus 5 ~~m~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v~~~---~~~L~~e 78 (198)
.+...+.|+|+|++|++|+..+..+..||||+|.+.+. ..+.+|++.+++ .||.|||+|.|.++.. ...|.|+
T Consensus 9 y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t-~nP~wne~f~f~i~~~~~~~~~l~~~ 87 (134)
T cd08403 9 YLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNT-LNPTYNEALVFDVPPENVDNVSLIIA 87 (134)
T ss_pred EcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCC-CCCcccceEEEECCHHHhCCCEEEEE
Confidence 34567899999999999988777889999999998542 236688887765 9999999999998653 2469999
Q ss_pred EEeCCCCCCCCCCCCCCceeEEEEEeCc
Q 040360 79 VQCKSKSSSSGNNNNHNKIVGFARIPVS 106 (198)
Q Consensus 79 V~~~~~~~~~g~~~~~d~~IG~a~IpL~ 106 (198)
|+|++. .+ ++++||++.|++.
T Consensus 88 v~d~~~---~~----~~~~IG~~~l~~~ 108 (134)
T cd08403 88 VVDYDR---VG----HNELIGVCRVGPN 108 (134)
T ss_pred EEECCC---CC----CCceeEEEEECCC
Confidence 999987 66 3999999999987
No 86
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.67 E-value=1.8e-16 Score=163.19 Aligned_cols=117 Identities=18% Similarity=0.294 Sum_probs=98.4
Q ss_pred ceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecC--CCcEEEEEEEeCCCCC
Q 040360 9 YRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPM--HARFITVQVQCKSKSS 86 (198)
Q Consensus 9 ~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~--~~~~L~~eV~~~~~~~ 86 (198)
.|.|.|+|++|+||. +.++.+||||++.++. .++.||++++++ .||+|||.|.|.+.. ....|+|+|||++.
T Consensus 1979 ~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~-~~~~kTkvvk~~-~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~-- 2052 (2102)
T PLN03200 1979 PGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGN-GPPRQTKVVSHS-SSPEWKEGFTWAFDSPPKGQKLHISCKSKNT-- 2052 (2102)
T ss_pred CcceEEEEeeccccc--cccCCCCCeEEEEECC-CCcccccccCCC-CCCCcccceeeeecCCCCCCceEEEEEecCc--
Confidence 489999999999998 6678999999999997 357799999987 999999999976654 44789999999998
Q ss_pred CCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCccEE---EEEEEEEee
Q 040360 87 SSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDKNGI---INVSVRSLK 144 (198)
Q Consensus 87 ~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~~G~---I~lsi~~f~ 144 (198)
++ ++.+|.+.|+|.++..+.. ...+|.|.+ +|+..|. |++.++ +.
T Consensus 2053 -f~-----kd~~G~~~i~l~~vv~~~~-----~~~~~~L~~-~~~k~G~~~~~~~e~~-w~ 2100 (2102)
T PLN03200 2053 -FG-----KSSLGKVTIQIDRVVMEGT-----YSGEYSLNP-ESNKDGSSRTLEIEFQ-WS 2100 (2102)
T ss_pred -cC-----CCCCceEEEEHHHHhcCce-----eeeeeecCc-ccccCCCcceEEEEEE-ec
Confidence 77 5699999999999997642 346999984 4667777 999888 54
No 87
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.66 E-value=8.6e-16 Score=119.01 Aligned_cols=112 Identities=13% Similarity=0.114 Sum_probs=84.1
Q ss_pred CcceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEecCC---CcEEEEEEE
Q 040360 7 SGYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIELPMH---ARFITVQVQ 80 (198)
Q Consensus 7 m~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v~~~---~~~L~~eV~ 80 (198)
...+.|+|+|++|++|...+..+..||||+|.+.+. ..+++|++.+++ .||+|||+|.|.++.. ...|.|+|+
T Consensus 11 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t-~nP~wnE~F~f~i~~~~l~~~~l~~~V~ 89 (135)
T cd08410 11 PSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGT-IDPFYNESFSFKVPQEELENVSLVFTVY 89 (135)
T ss_pred CCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCC-CCCccceeEEEeCCHHHhCCCEEEEEEE
Confidence 345889999999999987777789999999998442 245789998876 9999999999999642 347999999
Q ss_pred eCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCc
Q 040360 81 CKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDK 132 (198)
Q Consensus 81 ~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~ 132 (198)
|++. .+ ++++||++.|....+-.. + ...|++|....+++
T Consensus 90 d~d~---~~----~~~~iG~~~l~~~~~~~~---~---~~~W~~l~~~~~~~ 128 (135)
T cd08410 90 GHNV---KS----SNDFIGRIVIGQYSSGPS---E---TNHWRRMLNSQRTA 128 (135)
T ss_pred eCCC---CC----CCcEEEEEEEcCccCCch---H---HHHHHHHHhCCCCE
Confidence 9886 55 399999998765333211 1 12477766655543
No 88
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.66 E-value=9.6e-16 Score=116.92 Aligned_cols=109 Identities=20% Similarity=0.352 Sum_probs=80.0
Q ss_pred EEEEEEEeeCCCCCCCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEEeCCCC---
Q 040360 12 IELTVLSGEDLRIDRRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQCKSKS--- 85 (198)
Q Consensus 12 LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~~~~~~--- 85 (198)
|.|+|++|+||+ +..||||++.+++. ..+++|++++++ .||+|||+|.|+++. ...|.|.|||+..+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~T-lnPvWnE~F~i~l~~-s~~L~~~v~d~~~~~~~ 73 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDT-TEPNWNEEFEIELEG-SQTLRILCYEKCYSKVK 73 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCC-CCCccceEEEEEeCC-CCEEEEEEEEccccccc
Confidence 689999999996 45899999999862 246899999887 999999999999975 67999999997310
Q ss_pred -CCCCCCCCCCceeEEEEEeCc--cccCCCCCCCceEeEEEEeeCCCCCccEEEEEEEEEe
Q 040360 86 -SSSGNNNNHNKIVGFARIPVS--DFIGGYAPENYLHFLSYRLRNAKGDKNGIINVSVRSL 143 (198)
Q Consensus 86 -~~~g~~~~~d~~IG~a~IpL~--~l~~~~~~~~~~~~~sy~L~~~~Gk~~G~I~lsi~~f 143 (198)
...+ +|++||.+.|.|. .|... ..+.....|. | =+|+++++ |
T Consensus 74 ~d~~~----~d~~~G~g~i~Ld~~~~~~~-----~~~~~~~~~~---~---~~~~~s~~-~ 118 (118)
T cd08686 74 LDGEG----TDAIMGKGQIQLDPQSLQTK-----KWQEKVISMN---G---ITVNLSIK-F 118 (118)
T ss_pred ccccC----cccEEEEEEEEECHHHhccC-----CeeEEEEEec---C---EEEEEEEe-C
Confidence 0034 4999998888885 33222 1233444442 2 26777777 5
No 89
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.66 E-value=1.2e-15 Score=118.71 Aligned_cols=94 Identities=16% Similarity=0.206 Sum_probs=77.6
Q ss_pred ceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCC---cEEEeeeecCCCCCCeeeeEEEEEecC---CCcEEEEEEEeC
Q 040360 9 YRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSF---DYCTTKVDESGGSHPSWNEKLVIELPM---HARFITVQVQCK 82 (198)
Q Consensus 9 ~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~---~~~~T~v~~~~g~nP~WNE~f~f~v~~---~~~~L~~eV~~~ 82 (198)
.+.|.|+|++|+||...+ .+.+||||+|.+.+.. .+++|++.+++ .||+|||+|.|.++. ....|.|+|++.
T Consensus 14 ~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~-~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~ 91 (137)
T cd08409 14 LNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGA-ASPSFNESFSFKVTSRQLDTASLSLSVMQS 91 (137)
T ss_pred CCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCC-CCCcccceEEEECCHHHhCccEEEEEEEeC
Confidence 478999999999998766 7789999999997631 36689998775 999999999999975 346899999998
Q ss_pred CCCCCCCCCCCCCceeEEEEEeCccccCC
Q 040360 83 SKSSSSGNNNNHNKIVGFARIPVSDFIGG 111 (198)
Q Consensus 83 ~~~~~~g~~~~~d~~IG~a~IpL~~l~~~ 111 (198)
+. .+ ++++||++.|+...+..+
T Consensus 92 ~~---~~----~~~~lG~v~ig~~~~~~~ 113 (137)
T cd08409 92 GG---VR----KSKLLGRVVLGPFMYARG 113 (137)
T ss_pred CC---CC----CcceEEEEEECCcccCCC
Confidence 86 55 389999999997655444
No 90
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.65 E-value=1.2e-15 Score=119.04 Aligned_cols=110 Identities=12% Similarity=0.166 Sum_probs=85.4
Q ss_pred cceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC-C---cEEEeeeecCCCCCCeeeeEEEEEecC---CCcEEEEEEE
Q 040360 8 GYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS-F---DYCTTKVDESGGSHPSWNEKLVIELPM---HARFITVQVQ 80 (198)
Q Consensus 8 ~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~-~---~~~~T~v~~~~g~nP~WNE~f~f~v~~---~~~~L~~eV~ 80 (198)
..++|.|+|++|++|...+..+..||||++.+.++ . .+++|++.+++ .||+|||+|.|.++. ....|.|+|+
T Consensus 13 ~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t-~nPvfnEtF~f~i~~~~l~~~~L~~~V~ 91 (138)
T cd08408 13 LTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQ-PDPEFKETFVFQVALFQLSEVTLMFSVY 91 (138)
T ss_pred CCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCC-CCCcEeeeEEEECCHHHhCccEEEEEEE
Confidence 45889999999999987777778999999999752 1 35689999876 999999999999975 3469999999
Q ss_pred eCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCC
Q 040360 81 CKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGD 131 (198)
Q Consensus 81 ~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk 131 (198)
+.+. ++ ++++||++.|++...-.+. ...|+++.+..++
T Consensus 92 ~~~~---~~----~~~~iG~v~l~~~~~~~~~------~~hW~~~l~~~~~ 129 (138)
T cd08408 92 NKRK---MK----RKEMIGWFSLGLNSSGEEE------EEHWNEMKESKGQ 129 (138)
T ss_pred ECCC---CC----CCcEEEEEEECCcCCCchH------HHHHHHHHhCCCC
Confidence 9887 55 3999999999987542211 1246666554444
No 91
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.65 E-value=1.8e-15 Score=114.44 Aligned_cols=103 Identities=16% Similarity=0.215 Sum_probs=81.0
Q ss_pred EEEEeeCCCCCCCCCcCCcEEEEEECCCC-----cEEEeeeecCCCCCCeeeeEEEEEecC-CCcEEEEEEEeCCCCC-C
Q 040360 15 TVLSGEDLRIDRRLIKKNAFAIVQTDTSF-----DYCTTKVDESGGSHPSWNEKLVIELPM-HARFITVQVQCKSKSS-S 87 (198)
Q Consensus 15 tVlsA~~L~~~~~~~~~dpYvvv~~~~~~-----~~~~T~v~~~~g~nP~WNE~f~f~v~~-~~~~L~~eV~~~~~~~-~ 87 (198)
-.++|++|...+.+++.||||+|.+.+.. ..++|++++++ .||+|||+|.|.+.. ....|.|+|||++... .
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t-~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~ 83 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNN-LNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKD 83 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCC-CCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCC
Confidence 45899999877778899999999998721 25899999987 999999999998643 3568999999987410 0
Q ss_pred CCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeC
Q 040360 88 SGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRN 127 (198)
Q Consensus 88 ~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~ 127 (198)
.+ ++++||++.+++.+|..+. + ...+|.|.+
T Consensus 84 ~~----~~d~iG~~~i~l~~l~~~~---~--~~~~~~l~~ 114 (120)
T cd04048 84 LS----DHDFLGEAECTLGEIVSSP---G--QKLTLPLKG 114 (120)
T ss_pred CC----CCcEEEEEEEEHHHHhcCC---C--cEEEEEccC
Confidence 23 3899999999999998653 1 357888853
No 92
>PLN02270 phospholipase D alpha
Probab=99.63 E-value=1.1e-14 Score=139.61 Aligned_cols=124 Identities=19% Similarity=0.224 Sum_probs=105.7
Q ss_pred ceEEEEEEEEeeCCCCCC------------------CCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecC
Q 040360 9 YRTIELTVLSGEDLRIDR------------------RLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPM 70 (198)
Q Consensus 9 ~~~LeVtVlsA~~L~~~~------------------~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~ 70 (198)
-|+|+|+|..|++|++.+ ..+..||||+|.++. ....+|++..+...||.|||.|.+++.+
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~-a~v~rtr~~~~~~~~p~w~e~f~i~~ah 85 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEK-ARVGRTRKIENEPKNPRWYESFHIYCAH 85 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCC-cEEEEEeecCCCCCCCccccceEEeecc
Confidence 489999999999997420 114569999999999 6778999998865799999999999999
Q ss_pred CCcEEEEEEEeCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCc-cE--EEEEEEEEeeeCC
Q 040360 71 HARFITVQVQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDK-NG--IINVSVRSLKVAA 147 (198)
Q Consensus 71 ~~~~L~~eV~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~-~G--~I~lsi~~f~~~~ 147 (198)
....|.|.|+|.+. +| ..+||.+.||+.+++.|... ..||+|.+.+||+ ++ +|||+++ |.+-.
T Consensus 86 ~~~~v~f~vkd~~~---~g-----~~~ig~~~~p~~~~~~g~~i-----~~~~~~~~~~~~p~~~~~~~~~~~~-f~~~~ 151 (808)
T PLN02270 86 MASNIIFTVKDDNP---IG-----ATLIGRAYIPVEEILDGEEV-----DRWVEILDNDKNPIHGGSKIHVKLQ-YFEVT 151 (808)
T ss_pred CcceEEEEEecCCc---cC-----ceEEEEEEEEHHHhcCCCcc-----ccEEeccCCCCCcCCCCCEEEEEEE-EEEcc
Confidence 88999999999887 88 89999999999999988643 3599999999885 23 8999999 98753
No 93
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.62 E-value=4.4e-15 Score=115.82 Aligned_cols=94 Identities=14% Similarity=0.220 Sum_probs=76.1
Q ss_pred cceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEecCC--CcEEEEEEEeC
Q 040360 8 GYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIELPMH--ARFITVQVQCK 82 (198)
Q Consensus 8 ~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v~~~--~~~L~~eV~~~ 82 (198)
..+.|.|+|++|++|+........||||+|++-.. ..+.+|++.+++..||+|||+|.|+++.+ +..|.|+|+|+
T Consensus 12 ~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~ 91 (135)
T cd08692 12 VNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYSR 91 (135)
T ss_pred cCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEEeC
Confidence 45789999999999986544556799999998753 35789999988755799999999999864 34788888888
Q ss_pred CCCCCCCCCCCCCceeEEEEEeCccc
Q 040360 83 SKSSSSGNNNNHNKIVGFARIPVSDF 108 (198)
Q Consensus 83 ~~~~~~g~~~~~d~~IG~a~IpL~~l 108 (198)
+. .+ ++++||.+.++..+.
T Consensus 92 ~~---~~----~n~~IG~v~lG~~~~ 110 (135)
T cd08692 92 SS---VR----RKHFLGQVWISSDSS 110 (135)
T ss_pred CC---Cc----CCceEEEEEECCccC
Confidence 76 55 499999999999864
No 94
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.62 E-value=5e-15 Score=103.08 Aligned_cols=83 Identities=23% Similarity=0.334 Sum_probs=70.8
Q ss_pred EEEEEEEeeCCCCCCCCCcCCcEEEEEECCCC-cEEEeeeecCCCCCCeeeeEEEEEecC-CCcEEEEEEEeCCCCCCCC
Q 040360 12 IELTVLSGEDLRIDRRLIKKNAFAIVQTDTSF-DYCTTKVDESGGSHPSWNEKLVIELPM-HARFITVQVQCKSKSSSSG 89 (198)
Q Consensus 12 LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~-~~~~T~v~~~~g~nP~WNE~f~f~v~~-~~~~L~~eV~~~~~~~~~g 89 (198)
|+|+|++|++|...+..+..||||++.+.... ..++|++.+++ .+|.|||+|.|.+.. ....|.|+||+++. .+
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~-~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~---~~ 76 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNT-SNPVWNEEFEFPLDDPDLDSLSFEVWDKDS---FG 76 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSB-SSEEEEEEEEEEESHGCGTEEEEEEEEETS---SS
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeecc-ccceeeeeeeeeeecccccceEEEEEECCC---CC
Confidence 79999999999987777899999999999832 34899999887 999999999999753 34569999999987 66
Q ss_pred CCCCCCceeEEEE
Q 040360 90 NNNNHNKIVGFAR 102 (198)
Q Consensus 90 ~~~~~d~~IG~a~ 102 (198)
+|++||+++
T Consensus 77 ----~~~~iG~~~ 85 (85)
T PF00168_consen 77 ----KDELIGEVK 85 (85)
T ss_dssp ----SEEEEEEEE
T ss_pred ----CCCEEEEEC
Confidence 399999985
No 95
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=4.6e-14 Score=128.49 Aligned_cols=123 Identities=15% Similarity=0.189 Sum_probs=100.1
Q ss_pred ceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC-CcEEEeeeecCCCCCCeeeeEEEEEecC---CCcEEEEEEEeCCC
Q 040360 9 YRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS-FDYCTTKVDESGGSHPSWNEKLVIELPM---HARFITVQVQCKSK 84 (198)
Q Consensus 9 ~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~-~~~~~T~v~~~~g~nP~WNE~f~f~v~~---~~~~L~~eV~~~~~ 84 (198)
...|.|+|++|++|...+..+..||||++.+.++ ..+++|++.++. .||.|||+|.|.++. ....|.|.|||.+.
T Consensus 166 ~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~t-lnP~fnEtf~f~v~~~~l~~~~L~l~V~~~dr 244 (421)
T KOG1028|consen 166 LNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKT-LNPVFNETFRFEVPYEELSNRVLHLSVYDFDR 244 (421)
T ss_pred CCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecC-cCCccccceEeecCHHHhccCEEEEEEEecCC
Confidence 4689999999999987776677999999999996 368899999987 999999999999875 35799999999998
Q ss_pred CCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCC---CCccEEEEEEEEEeee
Q 040360 85 SSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAK---GDKNGIINVSVRSLKV 145 (198)
Q Consensus 85 ~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~---Gk~~G~I~lsi~~f~~ 145 (198)
|+ ++++||++.++|.++..... ...|++|.... .+..|+|.|+++ ..+
T Consensus 245 ---fs----r~~~iGev~~~l~~~~~~~~-----~~~w~~l~~~~~~~~~~~gel~~sL~-Y~p 295 (421)
T KOG1028|consen 245 ---FS----RHDFIGEVILPLGEVDLLST-----TLFWKDLQPSSTDSEELAGELLLSLC-YLP 295 (421)
T ss_pred ---cc----cccEEEEEEecCcccccccc-----ceeeeccccccCCcccccceEEEEEE-eec
Confidence 76 49999999999998865431 34688887642 223379888888 544
No 96
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.56 E-value=3.3e-14 Score=105.65 Aligned_cols=90 Identities=19% Similarity=0.273 Sum_probs=74.0
Q ss_pred EEEEEEeeCCCCCCCCCcCCcEEEEEECCC----CcEEEeeeecCCCCCCeeeeEEEEEecC-----CCcEEEEEEEeCC
Q 040360 13 ELTVLSGEDLRIDRRLIKKNAFAIVQTDTS----FDYCTTKVDESGGSHPSWNEKLVIELPM-----HARFITVQVQCKS 83 (198)
Q Consensus 13 eVtVlsA~~L~~~~~~~~~dpYvvv~~~~~----~~~~~T~v~~~~g~nP~WNE~f~f~v~~-----~~~~L~~eV~~~~ 83 (198)
.+..++|++|+..+..++.||||+|.+.+. ...++|++++++ .||+|| +|.|.+.. ....|.|+|||++
T Consensus 3 ~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t-~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d 80 (110)
T cd04047 3 VELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNT-LNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYD 80 (110)
T ss_pred EEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccC-CCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeC
Confidence 355679999998888889999999998762 135899999987 999999 68877532 1479999999998
Q ss_pred CCCCCCCCCCCCceeEEEEEeCccccCC
Q 040360 84 KSSSSGNNNNHNKIVGFARIPVSDFIGG 111 (198)
Q Consensus 84 ~~~~~g~~~~~d~~IG~a~IpL~~l~~~ 111 (198)
. .++ |++||++.++|.+|...
T Consensus 81 ~---~~~----d~~iG~~~~~l~~l~~~ 101 (110)
T cd04047 81 S---SGK----HDLIGEFETTLDELLKS 101 (110)
T ss_pred C---CCC----CcEEEEEEEEHHHHhcC
Confidence 7 663 99999999999999854
No 97
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.55 E-value=3e-14 Score=139.29 Aligned_cols=130 Identities=15% Similarity=0.195 Sum_probs=107.6
Q ss_pred CCCC-CCCcceEEEEEEEEeeCCCCCC--CCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEE
Q 040360 1 MLEK-SSSGYRTIELTVLSGEDLRIDR--RLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFITV 77 (198)
Q Consensus 1 ~~~~-~~m~~~~LeVtVlsA~~L~~~~--~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~ 77 (198)
||++ +.-+.|.|+|+|.+|++|+..+ ..+..|||+++.+.. ....+|++.++. .||+|||+|.+.|....+.|.+
T Consensus 426 ~m~~~s~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~-r~~gkT~v~~nt-~nPvwNEt~Yi~lns~~d~L~L 503 (1227)
T COG5038 426 IMAGDSGTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSD-RVIGKTRVKKNT-LNPVWNETFYILLNSFTDPLNL 503 (1227)
T ss_pred hhccccCCeeEEEEEEEeeccCcccccccccCCCCceEEEEecc-ccCCccceeecc-CCccccceEEEEecccCCceeE
Confidence 4555 8889999999999999998765 457899999999876 556699999987 9999999999999887889999
Q ss_pred EEEeCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCccEEEEEEEEEeee
Q 040360 78 QVQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDKNGIINVSVRSLKV 145 (198)
Q Consensus 78 eV~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~~G~I~lsi~~f~~ 145 (198)
+|||.+. ..+ |+++|.+.++|..|.+..... ..-|+++. +.+..|.|+++++ |.+
T Consensus 504 slyD~n~---~~s----d~vvG~~~l~L~~L~~~~~~~----ne~~e~~~-~~k~vGrL~yDl~-ffp 558 (1227)
T COG5038 504 SLYDFNS---FKS----DKVVGSTQLDLALLHQNPVKK----NELYEFLR-NTKNVGRLTYDLR-FFP 558 (1227)
T ss_pred EEEeccc---cCC----cceeeeEEechHHhhhccccc----cceeeeec-cCccceEEEEeee-eec
Confidence 9999766 332 999999999999998765333 34566654 5689999999999 664
No 98
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.54 E-value=1.2e-13 Score=97.68 Aligned_cols=93 Identities=26% Similarity=0.410 Sum_probs=79.2
Q ss_pred EEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCC--cEEEeeeecCCCCCCeeeeEEEEEecCC-CcEEEEEEEeCCCCCC
Q 040360 11 TIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSF--DYCTTKVDESGGSHPSWNEKLVIELPMH-ARFITVQVQCKSKSSS 87 (198)
Q Consensus 11 ~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~--~~~~T~v~~~~g~nP~WNE~f~f~v~~~-~~~L~~eV~~~~~~~~ 87 (198)
.|.|+|++|++|.........+|||.+.+.. . ..++|++..++ .||.|||+|.|.+... ...|.|+||++..
T Consensus 1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~-~~~~~~~T~~~~~~-~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~--- 75 (101)
T smart00239 1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDG-DPKEKKKTKVVKNT-LNPVWNETFEFEVPPPELAELEIEVYDKDR--- 75 (101)
T ss_pred CeEEEEEEeeCCCCCCCCCCCCceEEEEEeC-CccceEeeeEecCC-CCCcccceEEEEecCcccCEEEEEEEecCC---
Confidence 4789999999998765556789999999988 3 47899998876 6999999999999775 7899999999876
Q ss_pred CCCCCCCCceeEEEEEeCccccCCC
Q 040360 88 SGNNNNHNKIVGFARIPVSDFIGGY 112 (198)
Q Consensus 88 ~g~~~~~d~~IG~a~IpL~~l~~~~ 112 (198)
.+ .+.+||.+.++|.++..+.
T Consensus 76 ~~----~~~~~G~~~~~l~~~~~~~ 96 (101)
T smart00239 76 FG----RDDFIGQVTIPLSDLLLGG 96 (101)
T ss_pred cc----CCceeEEEEEEHHHcccCc
Confidence 44 3899999999999997654
No 99
>PLN02223 phosphoinositide phospholipase C
Probab=99.52 E-value=2.3e-13 Score=126.07 Aligned_cols=117 Identities=20% Similarity=0.330 Sum_probs=89.8
Q ss_pred ceEEEEEEEEeeCCCCC-----CCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEecCC-CcEEEEEE
Q 040360 9 YRTIELTVLSGEDLRID-----RRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIELPMH-ARFITVQV 79 (198)
Q Consensus 9 ~~~LeVtVlsA~~L~~~-----~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v~~~-~~~L~~eV 79 (198)
.++|.|+|++|++|... +.....||||+|.+.+- ..+.+|++. ++|.||+|||+|.|.+... -..|.|+|
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~-nNg~nPvWne~F~F~i~~PELAlLrf~V 486 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVK-NNEWKPTWGEEFTFPLTYPDLALISFEV 486 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeC-CCCcCceecceeEEEEEccCceEEEEEE
Confidence 47899999999987421 23356899999999862 345678755 5569999999999998543 46899999
Q ss_pred EeCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCccEEEEEEEE
Q 040360 80 QCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDKNGIINVSVR 141 (198)
Q Consensus 80 ~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~~G~I~lsi~ 141 (198)
+|++. .+ +|++||++.+|+..|..|+ .+.+|++.+|++---..|-++
T Consensus 487 ~D~D~---~~----~ddfiGQ~~LPv~~Lr~Gy--------R~VpL~~~~g~~l~~~~Ll~~ 533 (537)
T PLN02223 487 YDYEV---ST----ADAFCGQTCLPVSELIEGI--------RAVPLYDERGKACSSTMLLTR 533 (537)
T ss_pred EecCC---CC----CCcEEEEEecchHHhcCCc--------eeEeccCCCcCCCCCceEEEE
Confidence 99986 44 2899999999999998876 467999988875333444444
No 100
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.51 E-value=3.1e-13 Score=94.73 Aligned_cols=89 Identities=22% Similarity=0.338 Sum_probs=77.6
Q ss_pred EEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecC-CCcEEEEEEEeCCCCCCCCC
Q 040360 12 IELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPM-HARFITVQVQCKSKSSSSGN 90 (198)
Q Consensus 12 LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~-~~~~L~~eV~~~~~~~~~g~ 90 (198)
|.|.|++|++|.........+|||.+.+.+ ...++|++..+. .||.|||.|.|.+.. ....|.|+|++.+. .+
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~-~~~~~T~~~~~~-~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~---~~- 74 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGG-KQKFKTKVVKNT-LNPVWNETFEFPVLDPESDTLTVEVWDKDR---FS- 74 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEecc-CceEecceeCCC-CCCcccceEEEEccCCCCCEEEEEEEecCC---CC-
Confidence 579999999998656667899999999987 577899998876 899999999999987 56789999999886 44
Q ss_pred CCCCCceeEEEEEeCcccc
Q 040360 91 NNNHNKIVGFARIPVSDFI 109 (198)
Q Consensus 91 ~~~~d~~IG~a~IpL~~l~ 109 (198)
.+++||.+.+++.++.
T Consensus 75 ---~~~~ig~~~~~l~~l~ 90 (102)
T cd00030 75 ---KDDFLGEVEIPLSELL 90 (102)
T ss_pred ---CCceeEEEEEeHHHhh
Confidence 2889999999999997
No 101
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=5.5e-14 Score=131.16 Aligned_cols=138 Identities=25% Similarity=0.280 Sum_probs=107.3
Q ss_pred CCCCCCCcceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEE
Q 040360 1 MLEKSSSGYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQ 80 (198)
Q Consensus 1 ~~~~~~m~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~ 80 (198)
+++|+...+..+.+||+.|++|...++-|+.||||+++++. .+.+|+++... .||+|||+|.|+.......+.+.||
T Consensus 286 ilegsskwsakitltvlcaqgl~akdktg~sdpyvt~qv~k--tkrrtrti~~~-lnpvw~ekfhfechnstdrikvrvw 362 (1283)
T KOG1011|consen 286 ILEGSSKWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGK--TKRRTRTIHQE-LNPVWNEKFHFECHNSTDRIKVRVW 362 (1283)
T ss_pred HhccccccceeeEEeeeecccceecccCCCCCCcEEEeecc--cchhhHhhhhc-cchhhhhheeeeecCCCceeEEEEe
Confidence 47889999999999999999999999999999999999998 77799998875 9999999999999887789999999
Q ss_pred eCCCCCCC----CCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCC--ccEEEEE--EEEEeeeCCcc
Q 040360 81 CKSKSSSS----GNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGD--KNGIINV--SVRSLKVAADQ 149 (198)
Q Consensus 81 ~~~~~~~~----g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk--~~G~I~l--si~~f~~~~~~ 149 (198)
|++.+..+ ...+-.|+|||...|-+..|... -+.||.|.....+ ..|.|+| ++. +++.+..
T Consensus 363 ded~dlksklrqkl~resddflgqtvievrtlsge-------mdvwynlekrtdksavsgairlhisve-ikgeekv 431 (1283)
T KOG1011|consen 363 DEDNDLKSKLRQKLTRESDDFLGQTVIEVRTLSGE-------MDVWYNLEKRTDKSAVSGAIRLHISVE-IKGEEKV 431 (1283)
T ss_pred cCcccHHHHHHHHhhhcccccccceeEEEEecccc-------hhhhcchhhccchhhccceEEEEEEEE-EcCcccc
Confidence 98753110 00011388999999999988643 2479999765433 5665544 444 4444443
No 102
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.47 E-value=2.3e-14 Score=129.05 Aligned_cols=106 Identities=15% Similarity=0.161 Sum_probs=90.3
Q ss_pred cceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEecCC--CcEEEEEEEeC
Q 040360 8 GYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIELPMH--ARFITVQVQCK 82 (198)
Q Consensus 8 ~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v~~~--~~~L~~eV~~~ 82 (198)
+...|.|+|..|++|...+.+|-.||||.+.+-++ ..+++|++++.+ +||+|||+|+|.|.+. .+.|.|||||+
T Consensus 178 ~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~-LNP~wNEtftf~Lkp~DkdrRlsiEvWDW 256 (683)
T KOG0696|consen 178 KRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKAT-LNPVWNETFTFKLKPSDKDRRLSIEVWDW 256 (683)
T ss_pred cCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhh-cCccccceeEEecccccccceeEEEEecc
Confidence 34579999999999988888999999999999875 457899999987 9999999999999653 57899999999
Q ss_pred CCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeC
Q 040360 83 SKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRN 127 (198)
Q Consensus 83 ~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~ 127 (198)
+. .. +++++|...+-++||..... ..||.|..
T Consensus 257 Dr---Ts----RNDFMGslSFgisEl~K~p~------~GWyKlLs 288 (683)
T KOG0696|consen 257 DR---TS----RNDFMGSLSFGISELQKAPV------DGWYKLLS 288 (683)
T ss_pred cc---cc----cccccceecccHHHHhhcch------hhHHHHhh
Confidence 87 44 48999999999999986542 35898875
No 103
>PLN02952 phosphoinositide phospholipase C
Probab=99.47 E-value=7.8e-13 Score=124.41 Aligned_cols=119 Identities=22% Similarity=0.324 Sum_probs=95.8
Q ss_pred ceEEEEEEEEeeCCCCC------CCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEecCC-CcEEEEE
Q 040360 9 YRTIELTVLSGEDLRID------RRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIELPMH-ARFITVQ 78 (198)
Q Consensus 9 ~~~LeVtVlsA~~L~~~------~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v~~~-~~~L~~e 78 (198)
.++|.|+|++|++|+.. +.....||||+|.+.+- ..+.+|+++.++ .||+|||+|.|.+... -..|.|+
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN-~nPvWnE~F~F~i~~PELAllrf~ 547 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDN-WYPAWNEEFSFPLTVPELALLRIE 547 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCC-CCcccCCeeEEEEEcCCccEEEEE
Confidence 46899999999998532 11234599999999862 356799999887 8999999999988653 4689999
Q ss_pred EEeCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCccEEEEEEEEEee
Q 040360 79 VQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDKNGIINVSVRSLK 144 (198)
Q Consensus 79 V~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~~G~I~lsi~~f~ 144 (198)
|+|++. .+ ++++||++.|||..|..|+ .+.+|++..|+..+.++|-++ |.
T Consensus 548 V~D~D~---~~----~ddfiGq~~lPv~~Lr~Gy--------R~VpL~~~~G~~l~~a~Llv~-f~ 597 (599)
T PLN02952 548 VREYDM---SE----KDDFGGQTCLPVSELRPGI--------RSVPLHDKKGEKLKNVRLLMR-FI 597 (599)
T ss_pred EEecCC---CC----CCCeEEEEEcchhHhcCCc--------eeEeCcCCCCCCCCCEEEEEE-EE
Confidence 999886 55 2899999999999998876 477999999988777777777 64
No 104
>PLN02228 Phosphoinositide phospholipase C
Probab=99.38 E-value=7.9e-12 Score=117.02 Aligned_cols=121 Identities=18% Similarity=0.289 Sum_probs=93.6
Q ss_pred eEEEEEEEEeeCCCC---C---CCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCee-eeEEEEEecCC-CcEEEEE
Q 040360 10 RTIELTVLSGEDLRI---D---RRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSW-NEKLVIELPMH-ARFITVQ 78 (198)
Q Consensus 10 ~~LeVtVlsA~~L~~---~---~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~W-NE~f~f~v~~~-~~~L~~e 78 (198)
.+|.|+|++|+.|.. . +.....||||.|.+.+. ..+++|++..++ .||.| ||+|.|.+... -..|.|+
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~-~nP~W~~e~f~F~~~~pELA~lRf~ 509 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQ-WFPIWGNDEFLFQLRVPELALLWFK 509 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCC-CCceECCCeEEEEEEcCceeEEEEE
Confidence 579999999999732 1 12234799999999862 356799998775 89999 99999998653 4799999
Q ss_pred EEeCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCc--cEEEEEEEEEeeeCC
Q 040360 79 VQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDK--NGIINVSVRSLKVAA 147 (198)
Q Consensus 79 V~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~--~G~I~lsi~~f~~~~ 147 (198)
|+|++. .+ .|++||++.|||..|..|+ ...+|++..|+. ..+|-+.+. |.++.
T Consensus 510 V~D~d~---~~----~d~figq~~lPv~~Lr~GY--------R~VpL~~~~G~~l~~atLfv~~~-~~~~~ 564 (567)
T PLN02228 510 VQDYDN---DT----QNDFAGQTCLPLPELKSGV--------RAVRLHDRAGKAYKNTRLLVSFA-LDPPY 564 (567)
T ss_pred EEeCCC---CC----CCCEEEEEEcchhHhhCCe--------eEEEccCCCCCCCCCeEEEEEEE-EcCcc
Confidence 999876 44 2899999999999998875 466899988874 455666666 65443
No 105
>PLN02230 phosphoinositide phospholipase C 4
Probab=99.37 E-value=5.3e-12 Score=118.73 Aligned_cols=108 Identities=22% Similarity=0.317 Sum_probs=85.7
Q ss_pred ceEEEEEEEEeeCCCCC------CCCCcCCcEEEEEECC---CCcEEEeeeecCCCCCCeeeeEEEEEecCC-CcEEEEE
Q 040360 9 YRTIELTVLSGEDLRID------RRLIKKNAFAIVQTDT---SFDYCTTKVDESGGSHPSWNEKLVIELPMH-ARFITVQ 78 (198)
Q Consensus 9 ~~~LeVtVlsA~~L~~~------~~~~~~dpYvvv~~~~---~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~-~~~L~~e 78 (198)
..+|.|+|++++++... +.....||||+|.+.+ +..+.+|++..+ |.||+|||+|.|.+... -..|.|+
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n-~~nP~Wneef~F~l~vPELAllRf~ 546 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYD-TWTPIWNKEFIFPLAVPELALLRVE 546 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCC-CCCCccCCeeEEEEEcCceeEEEEE
Confidence 46899999999987421 2223579999999986 234568887666 59999999999988653 4799999
Q ss_pred EEeCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCc
Q 040360 79 VQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDK 132 (198)
Q Consensus 79 V~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~ 132 (198)
|+|++. .+ +|++||++.||+.+|..|+ ...+|++.+|..
T Consensus 547 V~d~d~---~~----~ddfiGQ~~lPv~~Lr~Gy--------R~V~L~~~~G~~ 585 (598)
T PLN02230 547 VHEHDI---NE----KDDFGGQTCLPVSEIRQGI--------HAVPLFNRKGVK 585 (598)
T ss_pred EEECCC---CC----CCCEEEEEEcchHHhhCcc--------ceEeccCCCcCC
Confidence 999886 44 3999999999999998886 366899988864
No 106
>PLN02222 phosphoinositide phospholipase C 2
Probab=99.34 E-value=1.9e-11 Score=114.70 Aligned_cols=107 Identities=21% Similarity=0.296 Sum_probs=85.6
Q ss_pred eEEEEEEEEeeCCCC------CCCCCcCCcEEEEEECC---CCcEEEeeeecCCCCCCeeeeEEEEEecCC-CcEEEEEE
Q 040360 10 RTIELTVLSGEDLRI------DRRLIKKNAFAIVQTDT---SFDYCTTKVDESGGSHPSWNEKLVIELPMH-ARFITVQV 79 (198)
Q Consensus 10 ~~LeVtVlsA~~L~~------~~~~~~~dpYvvv~~~~---~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~-~~~L~~eV 79 (198)
++|.|+|++++++.. .......||||.|.+.+ +..+.+|+++.++ .||.|||+|.|.+... -..|.|+|
T Consensus 452 ~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn-~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 452 TTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDN-WIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred ceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCC-CCcccCCeeEEEEEcCceeEEEEEE
Confidence 689999999998531 11234579999999975 2356799999887 7999999999987543 47999999
Q ss_pred EeCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCc
Q 040360 80 QCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDK 132 (198)
Q Consensus 80 ~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~ 132 (198)
+|++. .+ .|++||++.||+..|..|+ ...+|++..|..
T Consensus 531 ~d~D~---~~----~ddfigq~~lPv~~Lr~Gy--------R~V~L~~~~g~~ 568 (581)
T PLN02222 531 HEYDM---SE----KDDFGGQTCLPVWELSQGI--------RAFPLHSRKGEK 568 (581)
T ss_pred EECCC---CC----CCcEEEEEEcchhhhhCcc--------ceEEccCCCcCC
Confidence 99876 44 2899999999999998886 366899988864
No 107
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.33 E-value=1.6e-11 Score=95.69 Aligned_cols=94 Identities=16% Similarity=0.095 Sum_probs=76.9
Q ss_pred EEEEEEEEeeCCCCCC--CCCc--CCcEEEEEECCC-CcEEEeeeecCCCCC--CeeeeEEEEEecC-------------
Q 040360 11 TIELTVLSGEDLRIDR--RLIK--KNAFAIVQTDTS-FDYCTTKVDESGGSH--PSWNEKLVIELPM------------- 70 (198)
Q Consensus 11 ~LeVtVlsA~~L~~~~--~~~~--~dpYvvv~~~~~-~~~~~T~v~~~~g~n--P~WNE~f~f~v~~------------- 70 (198)
.|+|.|.+|+++.... ..+. .||||++++.+. ..+++|.|+.++ .| |.||+.|.|+++.
T Consensus 1 eLRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrs-lnG~~~FNwRfvF~~~~~~~~~~~~~~~~~ 79 (133)
T cd08374 1 ELRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRS-LDGEGNFNWRFVFPFDYLPAEKKIVVIKKE 79 (133)
T ss_pred CEEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEec-CCCCcEEeEEEEEeeecCCccceeEEEeec
Confidence 4899999999965432 2453 899999999984 467899999987 77 9999999988754
Q ss_pred --------C---CcEEEEEEEeCCCCCCCCCCCCCCceeEEEEEeCccccCCC
Q 040360 71 --------H---ARFITVQVQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGY 112 (198)
Q Consensus 71 --------~---~~~L~~eV~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~ 112 (198)
+ ...|.|+|||.+. ++ .|++||++.++|..+..+.
T Consensus 80 ~~~~~~~~e~~~~~~L~lqvwD~D~---~s----~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 80 HFWSLDETEYKIPPKLTLQVWDNDK---FS----PDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccccCcceEecCcEEEEEEEECcc---cC----CCCcceEEEEEhhhccccc
Confidence 1 2589999999987 55 3899999999999997764
No 108
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.32 E-value=5.5e-12 Score=94.29 Aligned_cols=86 Identities=19% Similarity=0.239 Sum_probs=72.5
Q ss_pred EEEEEEEeeCCCCCC---CCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEEeCCCCCCC
Q 040360 12 IELTVLSGEDLRIDR---RLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQCKSKSSSS 88 (198)
Q Consensus 12 LeVtVlsA~~L~~~~---~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~~~~~~~~~ 88 (198)
|.|+|.+|+||.... ..+++||||++.+++ ..+.+|++. .||.|||+|.|+|. .+..+.|.|||+.. .
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved-~~kaRTr~s----rnd~WnE~F~i~Vd-k~nEiel~VyDk~~---~ 71 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVED-VERARTKPS----RNDRWNEDFEIPVE-KNNEEEVIVYDKGG---D 71 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECC-EEEEeccCC----CCCcccceEEEEec-CCcEEEEEEEeCCC---C
Confidence 689999999997544 457889999999999 568899874 79999999999995 47899999999865 2
Q ss_pred CCCCCCCceeEEEEEeCccccCC
Q 040360 89 GNNNNHNKIVGFARIPVSDFIGG 111 (198)
Q Consensus 89 g~~~~~d~~IG~a~IpL~~l~~~ 111 (198)
. .-.||..=|+|+|+...
T Consensus 72 ~-----~~Pi~llW~~~sdi~Ee 89 (109)
T cd08689 72 Q-----PVPVGLLWLRLSDIAEE 89 (109)
T ss_pred e-----ecceeeehhhHHHHHHH
Confidence 2 66799999999999754
No 109
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.32 E-value=6.7e-12 Score=117.95 Aligned_cols=123 Identities=16% Similarity=0.259 Sum_probs=105.2
Q ss_pred eEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEEeCCCCCCCC
Q 040360 10 RTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQCKSKSSSSG 89 (198)
Q Consensus 10 ~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~~~~~~~~~g 89 (198)
..|.|.|..|++|...+..+..||||+|.++. ...++|.++.++ ..|.|.|.|.|.+|..-+.|.|-|||++. +
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~-E~v~RT~tv~ks-L~PF~gEe~~~~iP~~F~~l~fYv~D~d~----~ 78 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQ-EEVCRTATVEKS-LCPFFGEEFYFEIPRTFRYLSFYVWDRDL----K 78 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeecc-hhhhhhhhhhhh-cCCccccceEEecCcceeeEEEEEecccc----c
Confidence 46899999999999888888899999999998 678899999997 99999999999999877899999999884 4
Q ss_pred CCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEee--CCCCCccEEEEEEEEEeeeCCc
Q 040360 90 NNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLR--NAKGDKNGIINVSVRSLKVAAD 148 (198)
Q Consensus 90 ~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~--~~~Gk~~G~I~lsi~~f~~~~~ 148 (198)
+|+.||.+.|.=.+|.... + ...|+.|. |++...+|+|||+++ |.+...
T Consensus 79 ----~D~~IGKvai~re~l~~~~---~--~d~W~~L~~VD~dsEVQG~v~l~l~-~~e~~~ 129 (800)
T KOG2059|consen 79 ----RDDIIGKVAIKREDLHMYP---G--KDTWFSLQPVDPDSEVQGKVHLELA-LTEAIQ 129 (800)
T ss_pred ----cccccceeeeeHHHHhhCC---C--CccceeccccCCChhhceeEEEEEE-eccccC
Confidence 4999999999988887653 2 23466665 467789999999999 887644
No 110
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=99.31 E-value=1.2e-11 Score=117.33 Aligned_cols=116 Identities=21% Similarity=0.357 Sum_probs=91.4
Q ss_pred EEEEEEEEeeCCCC-C--CCC-CcCCcEEEEEECC---CCcEEEeeeecCCCCCCeeeeEEEEEecCC-CcEEEEEEEeC
Q 040360 11 TIELTVLSGEDLRI-D--RRL-IKKNAFAIVQTDT---SFDYCTTKVDESGGSHPSWNEKLVIELPMH-ARFITVQVQCK 82 (198)
Q Consensus 11 ~LeVtVlsA~~L~~-~--~~~-~~~dpYvvv~~~~---~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~-~~~L~~eV~~~ 82 (198)
+|.|.|++++++.. . ..+ .-.||||.|++.+ +....+|++++++|-||.|+|+|.|.|... -+.|+|+|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 89999999997743 2 222 4579999999986 235679998888889999999999999654 47899999999
Q ss_pred CCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCc--cEEEEEEEE
Q 040360 83 SKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDK--NGIINVSVR 141 (198)
Q Consensus 83 ~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~--~G~I~lsi~ 141 (198)
+. .++ |+|+|+..||+.+|..|+ ...+|.+..|.. .-.|-+.++
T Consensus 697 d~---~~~----ddF~GQ~tlP~~~L~~Gy--------RhVpL~~~~G~~~~~asLfv~i~ 742 (746)
T KOG0169|consen 697 DY---IGK----DDFIGQTTLPVSELRQGY--------RHVPLLSREGEALSSASLFVRIA 742 (746)
T ss_pred CC---CCc----ccccceeeccHHHhhCce--------eeeeecCCCCccccceeEEEEEE
Confidence 98 673 999999999999999886 356888877863 334444444
No 111
>PLN02352 phospholipase D epsilon
Probab=99.31 E-value=4.3e-11 Score=114.81 Aligned_cols=126 Identities=15% Similarity=0.125 Sum_probs=97.5
Q ss_pred CCCCCCCcceEEEEEEEEeeCCCCCC----CC-CcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCCC-cE
Q 040360 1 MLEKSSSGYRTIELTVLSGEDLRIDR----RL-IKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHA-RF 74 (198)
Q Consensus 1 ~~~~~~m~~~~LeVtVlsA~~L~~~~----~~-~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~-~~ 74 (198)
|.+|-..--|+|++||..|+-+...- .. ...||||+|.++. ....+| .+. .||.|||.|.+++.+.. ..
T Consensus 1 ~~~~~~~lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~-~~v~rt---~~~-~~p~w~e~f~i~~ah~~~~~ 75 (758)
T PLN02352 1 MEEKQKFFHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGN-KKVAKT---SHE-YDRVWNQTFQILCAHPLDST 75 (758)
T ss_pred CcccccccccceEEEEEEeeehhhcccccccccCCCCceEEEEeCC-cEEecC---CCC-CCCccccceeEEeeeecCCc
Confidence 44555566799999999998553221 11 1239999999998 566677 444 69999999999999877 68
Q ss_pred EEEEEEeCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCc-cE-EEEEEEEEeeeCCc
Q 040360 75 ITVQVQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDK-NG-IINVSVRSLKVAAD 148 (198)
Q Consensus 75 L~~eV~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~-~G-~I~lsi~~f~~~~~ 148 (198)
|.|.|+| + ..+||.+.||+.+++.|.. ....||+|.+.+||+ .| +|+|+++ |.+...
T Consensus 76 ~~f~vk~-------~-----~~~ig~~~~p~~~~~~g~~----~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~ 134 (758)
T PLN02352 76 ITITLKT-------K-----CSILGRFHIQAHQIVTEAS----FINGFFPLIMENGKPNPELKLRFMLW-FRPAEL 134 (758)
T ss_pred EEEEEec-------C-----CeEEEEEEEEHHHhhCCCc----ccceEEEcccCCCCCCCCCEEEEEEE-EEEhhh
Confidence 9999986 3 5699999999999998742 134699999998874 44 8999999 987643
No 112
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.24 E-value=2.7e-11 Score=118.94 Aligned_cols=123 Identities=20% Similarity=0.229 Sum_probs=98.7
Q ss_pred ceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecC-CCcEEEEEEEeCCCCCC
Q 040360 9 YRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPM-HARFITVQVQCKSKSSS 87 (198)
Q Consensus 9 ~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~-~~~~L~~eV~~~~~~~~ 87 (198)
.|-|+|.+.+|++|+..+..+..||||++.+.+ ...++|++++++ +||+|||.+.+++.. ....|.|.|+|++.
T Consensus 1039 sG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~-k~vyktkv~Kkt-lNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~--- 1113 (1227)
T COG5038 1039 SGYLTIMLRSGENLPSSDENGYSDPFVKLFLNE-KSVYKTKVVKKT-LNPVWNEEFTIEVLNRVKDVLTINVNDWDS--- 1113 (1227)
T ss_pred cCcEEEEEeccCCCcccccCCCCCceEEEEecc-eecccccchhcc-CCCCccccceEeeeccccceEEEEEeeccc---
Confidence 578999999999999988889999999999998 568999999997 999999999999974 45789999999987
Q ss_pred CCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCC-CCccEEEEEEEEEeeeC
Q 040360 88 SGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAK-GDKNGIINVSVRSLKVA 146 (198)
Q Consensus 88 ~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~-Gk~~G~I~lsi~~f~~~ 146 (198)
.+ ++++||.+.|+|..+..+.. . .....|..+. +...|.+|.... |...
T Consensus 1114 ~~----knd~lg~~~idL~~l~~~~~-~----n~~i~ldgk~~~~~~g~~~~~~~-~r~~ 1163 (1227)
T COG5038 1114 GE----KNDLLGTAEIDLSKLEPGGT-T----NSNIPLDGKTFIVLDGTLHPGFN-FRSK 1163 (1227)
T ss_pred CC----CccccccccccHhhcCcCCc-c----ceeeeccCcceEecccEeeccee-cchh
Confidence 45 49999999999999986642 1 1233443322 345677777766 6544
No 113
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=3.2e-10 Score=103.41 Aligned_cols=91 Identities=15% Similarity=0.213 Sum_probs=77.5
Q ss_pred ceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEecCC---CcEEEEEEEeC
Q 040360 9 YRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIELPMH---ARFITVQVQCK 82 (198)
Q Consensus 9 ~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v~~~---~~~L~~eV~~~ 82 (198)
.+.|.|.|+.|++|+..+..+..||||++.+-.. ..+.+|.+.++. .||+|||+|.|.++.+ +..|.|+|||+
T Consensus 297 ~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~-~npv~nesf~F~vp~~~l~~~~l~l~V~d~ 375 (421)
T KOG1028|consen 297 AGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKT-LNPVFNETFVFDVPPEQLAEVSLELTVWDH 375 (421)
T ss_pred CCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCC-CCCcccccEEEeCCHHHhheeEEEEEEEEc
Confidence 4889999999999998787888999999999764 356788888876 9999999999999853 45899999999
Q ss_pred CCCCCCCCCCCCCceeEEEEEeCcc
Q 040360 83 SKSSSSGNNNNHNKIVGFARIPVSD 107 (198)
Q Consensus 83 ~~~~~~g~~~~~d~~IG~a~IpL~~ 107 (198)
+. ++. +++||.+.+....
T Consensus 376 d~---~~~----~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 376 DT---LGS----NDLIGRCILGSDS 393 (421)
T ss_pred cc---ccc----cceeeEEEecCCC
Confidence 98 773 7799988887765
No 114
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.97 E-value=3.9e-09 Score=101.01 Aligned_cols=103 Identities=24% Similarity=0.286 Sum_probs=81.6
Q ss_pred ceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeee-eEEEEEecCC-CcEEEEEEEeCC
Q 040360 9 YRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWN-EKLVIELPMH-ARFITVQVQCKS 83 (198)
Q Consensus 9 ~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WN-E~f~f~v~~~-~~~L~~eV~~~~ 83 (198)
..+|.|.|+.|+.|...++ +-..|||.|.+-+- ..+++|.++.++|.||+|| |+|.|.+... -.+|.|.|++++
T Consensus 1064 p~~lsv~vigaRHL~k~gr-~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeD 1142 (1267)
T KOG1264|consen 1064 PMTLSVKVLGARHLPKLGR-SIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEED 1142 (1267)
T ss_pred ceEEEEEEeeccccccCCC-CccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEeccc
Confidence 4789999999999974433 33579999999762 3566666666667999999 9999999653 479999999999
Q ss_pred CCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeC
Q 040360 84 KSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRN 127 (198)
Q Consensus 84 ~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~ 127 (198)
. ++ +..|||.|..|+..+-.|. .+.+|++
T Consensus 1143 m---fs----~~~FiaqA~yPv~~ik~Gf--------RsVpLkN 1171 (1267)
T KOG1264|consen 1143 M---FS----DPNFLAQATYPVKAIKSGF--------RSVPLKN 1171 (1267)
T ss_pred c---cC----Ccceeeeeecchhhhhccc--------eeeeccc
Confidence 8 66 3679999999999998774 4667765
No 115
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.94 E-value=4.2e-09 Score=98.10 Aligned_cols=126 Identities=13% Similarity=0.149 Sum_probs=102.9
Q ss_pred cceEEEEEEEEeeCCCCCCCC-CcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeE-EEEEecC---CCcEEEEEEEeC
Q 040360 8 GYRTIELTVLSGEDLRIDRRL-IKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEK-LVIELPM---HARFITVQVQCK 82 (198)
Q Consensus 8 ~~~~LeVtVlsA~~L~~~~~~-~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~-f~f~v~~---~~~~L~~eV~~~ 82 (198)
++++|-|+|..|++|+..++. ...|.||.+.+.. ..++|.|-.++ .||.||.. |+|++++ +.+.|.|.++|+
T Consensus 1 mpgkl~vki~a~r~lpvmdkasd~tdafveik~~n--~t~ktdvf~ks-lnp~wnsdwfkfevddadlqdeplqi~lld~ 77 (1169)
T KOG1031|consen 1 MPGKLGVKIKAARHLPVMDKASDLTDAFVEIKFAN--TTFKTDVFLKS-LNPQWNSDWFKFEVDDADLQDEPLQIRLLDH 77 (1169)
T ss_pred CCCcceeEEEeccCCcccccccccchheeEEEecc--cceehhhhhhh-cCCcccccceEEecChhhhccCCeeEEEecc
Confidence 468999999999999876654 4679999999998 88999998887 99999987 9999975 357899999999
Q ss_pred CCCCCCCCCCCCCceeEEEEEeCccccCCC-----CCCCceEeEEEEeeCCCCCccEEEEEEEEEee
Q 040360 83 SKSSSSGNNNNHNKIVGFARIPVSDFIGGY-----APENYLHFLSYRLRNAKGDKNGIINVSVRSLK 144 (198)
Q Consensus 83 ~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~-----~~~~~~~~~sy~L~~~~Gk~~G~I~lsi~~f~ 144 (198)
+. .. .++-||.+.|.+..|.-.. ...+..-..|+++.+.-...+|+|++-++ +.
T Consensus 78 dt---ys----andaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihgirgeinvivk-vd 136 (1169)
T KOG1031|consen 78 DT---YS----ANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHGIRGEINVIVK-VD 136 (1169)
T ss_pred cc---cc----cccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecccccceeEEEEE-Ee
Confidence 87 44 2889999999998775332 11234567899999876678999999888 65
No 116
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.73 E-value=3.5e-09 Score=100.40 Aligned_cols=94 Identities=18% Similarity=0.211 Sum_probs=80.9
Q ss_pred eEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC-----CcEEEeeeecCCCCCCeeeeEEEEEecCC-----CcEEEEEE
Q 040360 10 RTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS-----FDYCTTKVDESGGSHPSWNEKLVIELPMH-----ARFITVQV 79 (198)
Q Consensus 10 ~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~-----~~~~~T~v~~~~g~nP~WNE~f~f~v~~~-----~~~L~~eV 79 (198)
.+|.|.|+.|+|+-.-+.+|-.||||+|.+.+. -..++|+|+.++ .||+++|.|.|.|+.+ ..-|.|+|
T Consensus 947 q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rt-LnPVfDE~FeFsVp~e~c~te~Am~~FTV 1025 (1103)
T KOG1328|consen 947 QTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRT-LNPVFDETFEFSVPPEPCSTETAMLHFTV 1025 (1103)
T ss_pred cchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhcc-ccchhhhheeeecCccccccccceEEEEe
Confidence 578899999999987788899999999999983 235699999987 9999999999999864 35799999
Q ss_pred EeCCCCCCCCCCCCCCceeEEEEEeCccccCC
Q 040360 80 QCKSKSSSSGNNNNHNKIVGFARIPVSDFIGG 111 (198)
Q Consensus 80 ~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~ 111 (198)
+|++. +.. ++|-|+|.+-|.++.+-
T Consensus 1026 MDHD~---L~s----NDFaGEA~L~Lg~vpGv 1050 (1103)
T KOG1328|consen 1026 MDHDY---LRS----NDFAGEAFLELGDVPGV 1050 (1103)
T ss_pred eccce---ecc----cccchHHHHhhCCCCCc
Confidence 99998 553 89999999999988643
No 117
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.54 E-value=2.7e-08 Score=94.55 Aligned_cols=131 Identities=15% Similarity=0.240 Sum_probs=95.7
Q ss_pred eEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCC-----------------------------cEEEeeeecCCCCCCee
Q 040360 10 RTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSF-----------------------------DYCTTKVDESGGSHPSW 60 (198)
Q Consensus 10 ~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~-----------------------------~~~~T~v~~~~g~nP~W 60 (198)
-.|.|.++.|+||-.++..|..||||...+-+.. --+.|.|.+.+ .||.|
T Consensus 114 ~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~T-LnPkW 192 (1103)
T KOG1328|consen 114 VLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKT-LNPKW 192 (1103)
T ss_pred HHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhccccccc-CCcch
Confidence 4477888899999888888999999988775410 01245566665 99999
Q ss_pred eeEEEEEecC-CCcEEEEEEEeCCCCC--------------CCC------------CCCCC---CceeEEEEEeCccccC
Q 040360 61 NEKLVIELPM-HARFITVQVQCKSKSS--------------SSG------------NNNNH---NKIVGFARIPVSDFIG 110 (198)
Q Consensus 61 NE~f~f~v~~-~~~~L~~eV~~~~~~~--------------~~g------------~~~~~---d~~IG~a~IpL~~l~~ 110 (198)
+|+|.|.+.+ ....+++.|||++... +-| .-|++ |+|||-+.|||+|+..
T Consensus 193 ~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~EiP~ 272 (1103)
T KOG1328|consen 193 SEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEIPP 272 (1103)
T ss_pred hhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcCCc
Confidence 9999999975 5678999999965310 000 01233 8999999999999976
Q ss_pred CCCCCCceEeEEEEeeCCC--CCccEEEEEEEEEeeeCCc
Q 040360 111 GYAPENYLHFLSYRLRNAK--GDKNGIINVSVRSLKVAAD 148 (198)
Q Consensus 111 ~~~~~~~~~~~sy~L~~~~--Gk~~G~I~lsi~~f~~~~~ 148 (198)
.+. ..||.|...+ .+..|.++|.++ +...++
T Consensus 273 ~Gl------d~WFkLepRS~~S~VqG~~~Lklw-LsT~e~ 305 (1103)
T KOG1328|consen 273 DGL------DQWFKLEPRSDKSKVQGQVKLKLW-LSTKEE 305 (1103)
T ss_pred chH------HHHhccCcccccccccceEEEEEE-Eeeecc
Confidence 542 2477776544 468999999999 877654
No 118
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.31 E-value=6.3e-07 Score=88.84 Aligned_cols=106 Identities=21% Similarity=0.194 Sum_probs=84.6
Q ss_pred ceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEE-ecC---CCcEEEEEEEe
Q 040360 9 YRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIE-LPM---HARFITVQVQC 81 (198)
Q Consensus 9 ~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~-v~~---~~~~L~~eV~~ 81 (198)
.++|-|.|..|++|..-.....+||||+..+-++ ..+.||+|.+++ .||.+||.+... .+. .++.|.+.|+.
T Consensus 1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt-~~PTfnE~LvY~g~p~~~l~qReLQ~sVls 1601 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKT-RNPTFNEMLVYDGFPKEILQQRELQVSVLS 1601 (1639)
T ss_pred CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhcccccc-CCCchhhheeecCCchhhhhhheeeeeeec
Confidence 4789999999999965555567999999999986 356799999987 999999999877 443 35899999999
Q ss_pred CCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeC
Q 040360 82 KSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRN 127 (198)
Q Consensus 82 ~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~ 127 (198)
.+. +-. +.++|.+.|||.++--.. + ...||+|..
T Consensus 1602 ~~~---~~e----n~~lg~v~i~L~~~~l~k--E---~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1602 NGG---LLE----NVFLGGVNIPLLKVDLLK--E---SVGWYNLGA 1635 (1639)
T ss_pred ccc---eee----eeeeeeeecchhhcchhh--h---hcceeeccc
Confidence 876 442 889999999999885432 1 236998853
No 119
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=98.22 E-value=3e-06 Score=80.50 Aligned_cols=118 Identities=19% Similarity=0.177 Sum_probs=81.4
Q ss_pred EEEEeeCCCCCCCCCcCCcEEEEEECCC--CcEEEeeeecCCCCCCeeeeEEEEEecCC----------------CcEEE
Q 040360 15 TVLSGEDLRIDRRLIKKNAFAIVQTDTS--FDYCTTKVDESGGSHPSWNEKLVIELPMH----------------ARFIT 76 (198)
Q Consensus 15 tVlsA~~L~~~~~~~~~dpYvvv~~~~~--~~~~~T~v~~~~g~nP~WNE~f~f~v~~~----------------~~~L~ 76 (198)
.+++++++-.. ..+.+||||+|...+. .+..+|++.+.+ .+|.|||.|.|++..+ ...|.
T Consensus 136 ~~L~~r~~~P~-~~~~~dp~~~v~~~g~~~~~~~~T~~~kkt-~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~ir 213 (800)
T KOG2059|consen 136 HVLKTRQGLPI-INGQCDPFARVTLCGPSKLKEKKTKVKKKT-TNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIR 213 (800)
T ss_pred hhhhhcccCce-eCCCCCcceEEeecccchhhccccceeeec-cCcchhhheeeeeccccccccchhcCcccCCceeeEE
Confidence 34555555322 2355999999998873 123588988886 9999999999998653 24688
Q ss_pred EEEEeCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCC-CC------CccEEEEEEEEEeeeC
Q 040360 77 VQVQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNA-KG------DKNGIINVSVRSLKVA 146 (198)
Q Consensus 77 ~eV~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~-~G------k~~G~I~lsi~~f~~~ 146 (198)
+++|+... .+.+ +.|+|+.+||+..+.....+ ..||.|... +| .--|.+.+.++ ...+
T Consensus 214 v~lW~~~~-~~~~-----~~FlGevrv~v~~~~~~s~p-----~~W~~Lqp~~~g~~~~~~~~lGslrl~v~-y~~D 278 (800)
T KOG2059|consen 214 VDLWNDLN-LVIN-----DVFLGEVRVPVDVLRQKSSP-----AAWYYLQPRPNGEKSSDGGDLGSLRLNVT-YTED 278 (800)
T ss_pred Eeeccchh-hhhh-----hhhceeEEeehhhhhhccCc-----cceEEEecCCCcccCCCCCCccceeeeEE-eeec
Confidence 88887432 1223 89999999999988744433 358888762 33 23577777777 6555
No 120
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.21 E-value=5.9e-06 Score=80.20 Aligned_cols=112 Identities=21% Similarity=0.267 Sum_probs=85.9
Q ss_pred eEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC-----CcEEEeeeecCCCCCCeeeeE-EEEE-e-cCCCcEEEEEEEe
Q 040360 10 RTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS-----FDYCTTKVDESGGSHPSWNEK-LVIE-L-PMHARFITVQVQC 81 (198)
Q Consensus 10 ~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~-----~~~~~T~v~~~~g~nP~WNE~-f~f~-v-~~~~~~L~~eV~~ 81 (198)
.+|.|+|+|++-|.. .+...||.|.+.+- ...++|++..+++.||+|||. |.|. | -++-.+|.|-||+
T Consensus 703 ~t~sV~VISgqFLSd----rkvgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavye 778 (1189)
T KOG1265|consen 703 ATLSVTVISGQFLSD----RKVGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYE 778 (1189)
T ss_pred eeEEEEEEeeeeccc----cccCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeec
Confidence 689999999999963 24569999999862 356899999999999999996 7775 2 2335799999997
Q ss_pred CCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCc----cEEEEEEEEEeee
Q 040360 82 KSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDK----NGIINVSVRSLKV 145 (198)
Q Consensus 82 ~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~----~G~I~lsi~~f~~ 145 (198)
+ | .++||.--+|+..|..|+ ....||.+.+++ .-.|.+.++ -+.
T Consensus 779 E------g-----gK~ig~RIlpvd~l~~GY--------rhv~LRse~Nqpl~lp~Lfv~i~~k-dyv 826 (1189)
T KOG1265|consen 779 E------G-----GKFIGQRILPVDGLNAGY--------RHVCLRSESNQPLTLPALFVYIVLK-DYV 826 (1189)
T ss_pred c------C-----CceeeeeccchhcccCcc--------eeEEecCCCCCccccceeEEEEEee-ccC
Confidence 4 3 579999999999998886 244677776664 445666665 443
No 121
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=98.11 E-value=4.1e-06 Score=64.99 Aligned_cols=109 Identities=12% Similarity=0.217 Sum_probs=75.4
Q ss_pred EEEEEEEeeCCCCC-------CC------CCcCCcEEEEEEC--CCCcEEEeeeecCCCCCCeeeeEEEEEecC------
Q 040360 12 IELTVLSGEDLRID-------RR------LIKKNAFAIVQTD--TSFDYCTTKVDESGGSHPSWNEKLVIELPM------ 70 (198)
Q Consensus 12 LeVtVlsA~~L~~~-------~~------~~~~dpYvvv~~~--~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~------ 70 (198)
|.|.|+.|.+|+.- +. .-..++||++++. +..+..+|++..++ -.|.||..+.|.++.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArS-FcPeF~Hh~Efpc~lv~~~~~ 79 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARS-FCPEFNHHVEFPCNLVVQRNS 79 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhh-cCCCccceEEEecccEEEcCC
Confidence 46788889888631 11 1246899999953 33577899999887 999999999999872
Q ss_pred ----------CCcEEEEEEEeCCCCCCCC---CCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEe
Q 040360 71 ----------HARFITVQVQCKSKSSSSG---NNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRL 125 (198)
Q Consensus 71 ----------~~~~L~~eV~~~~~~~~~g---~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L 125 (198)
+...+.|+||++...+..+ -++-+|=+||.++||+.+|+..... -..||++
T Consensus 80 Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsG----itGW~pi 143 (143)
T cd08683 80 GEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSG----ITGWYPI 143 (143)
T ss_pred CccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccC----ccccccC
Confidence 1358999999976411110 0011367799999999999976532 2357753
No 122
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=98.02 E-value=5.4e-06 Score=74.92 Aligned_cols=126 Identities=14% Similarity=0.175 Sum_probs=93.6
Q ss_pred cceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECC---CCcEEEeeeecCCCCCCeeeeEEEEEecCC------------C
Q 040360 8 GYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDT---SFDYCTTKVDESGGSHPSWNEKLVIELPMH------------A 72 (198)
Q Consensus 8 ~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~---~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~------------~ 72 (198)
....|+++|+++.++......-..|.|+.+.+-- +.++.+|.++++. .+|.++|.|.+.+..+ .
T Consensus 365 ~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t-~SPdfde~fklni~rg~~~nr~fqR~fkr 443 (523)
T KOG3837|consen 365 KDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVT-PSPDFDEDFKLNIRRGPGLNREFQRRFKR 443 (523)
T ss_pred chhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCC-CCCCcccceeeeccCCCcccHHHHHHHHh
Confidence 3456889999999997654444568888877642 1467789999987 8999999999988541 1
Q ss_pred cEEEEEEEeCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCccEEEEEEEEEeeeC
Q 040360 73 RFITVQVQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDKNGIINVSVRSLKVA 146 (198)
Q Consensus 73 ~~L~~eV~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~~G~I~lsi~~f~~~ 146 (198)
.-+.||||++.. |+. .|+++|.+.|-|.-|...- ..+..|.|.|.....-|+|.+.+| +..+
T Consensus 444 ~g~kfeifhkgg--f~r----Sdkl~gt~nikle~Len~c-----ei~e~~~l~DGRK~vGGkLevKvR-iR~P 505 (523)
T KOG3837|consen 444 LGKKFEIFHKGG--FNR----SDKLTGTGNIKLEILENMC-----EICEYLPLKDGRKAVGGKLEVKVR-IRQP 505 (523)
T ss_pred cCeeEEEeeccc--ccc----ccceeceeeeeehhhhccc-----chhhceeccccccccCCeeEEEEE-Eecc
Confidence 369999999987 444 3999999999998775432 234588888643336789999988 7644
No 123
>PLN02964 phosphatidylserine decarboxylase
Probab=97.92 E-value=2e-05 Score=75.49 Aligned_cols=86 Identities=21% Similarity=0.360 Sum_probs=70.4
Q ss_pred eEEEEEEEEeeCCCCCCCCCcCCcE-EEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecC-CCcEEEEEEEeCCCCCC
Q 040360 10 RTIELTVLSGEDLRIDRRLIKKNAF-AIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPM-HARFITVQVQCKSKSSS 87 (198)
Q Consensus 10 ~~LeVtVlsA~~L~~~~~~~~~dpY-vvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~-~~~~L~~eV~~~~~~~~ 87 (198)
+.+.|||++|+ +. ..|+| +.++++. +.++|.+.+++ .||+|||...|.|.. +..+.+|.|++.+.
T Consensus 54 ~~~~~~~~~~~-~~------~~~~~~~~~~~g~--~~f~t~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 120 (644)
T PLN02964 54 GIALLTLVGAE-MK------FKDKWLACVSFGE--QTFRTETSDST-DKPVWNSEKKLLLEKNGPHLARISVFETNR--- 120 (644)
T ss_pred CeEEEEeehhh-hc------cCCcEEEEEEecc--eeeeecccccc-CCcccchhhceEeccCCcceEEEEEEecCC---
Confidence 78899999998 32 24777 5666666 99999999987 999999999888854 44578999999887
Q ss_pred CCCCCCCCceeEEEEEeCccccCCC
Q 040360 88 SGNNNNHNKIVGFARIPVSDFIGGY 112 (198)
Q Consensus 88 ~g~~~~~d~~IG~a~IpL~~l~~~~ 112 (198)
+.+ ++++|.+.++|.+|....
T Consensus 121 ~s~----n~lv~~~e~~~t~f~~kq 141 (644)
T PLN02964 121 LSK----NTLVGYCELDLFDFVTQE 141 (644)
T ss_pred CCH----HHhhhheeecHhhccHHH
Confidence 553 999999999999998664
No 124
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.71 E-value=0.00014 Score=69.15 Aligned_cols=116 Identities=16% Similarity=0.140 Sum_probs=84.1
Q ss_pred eEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC-----CcEEEeeeecCCCCCCeeeeEEEEEecCC----CcEEEEEEE
Q 040360 10 RTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS-----FDYCTTKVDESGGSHPSWNEKLVIELPMH----ARFITVQVQ 80 (198)
Q Consensus 10 ~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~-----~~~~~T~v~~~~g~nP~WNE~f~f~v~~~----~~~L~~eV~ 80 (198)
..+.|.|+.|.||+=. ..+--.|||.|.+-++ ..++.|++..++ -.|.+||+|.|-+..+ ...|.|+|+
T Consensus 1125 hkvtvkvvaandlkwq-tsgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnn-WaPKyNEtF~f~Lg~e~~Pe~YEL~~~VK 1202 (1283)
T KOG1011|consen 1125 HKVTVKVVAANDLKWQ-TSGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNN-WAPKYNETFHFFLGNEGGPEHYELQFCVK 1202 (1283)
T ss_pred ceEEEEEEecccccch-hccccccceEEEEecCcccchhhhccccccCCC-cCcccCceeEEEeccCCCCceEEEEEeeh
Confidence 4678899999999732 2355699999998663 346788887765 8999999999999653 358999998
Q ss_pred eCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCC-CCCccEEEEEE
Q 040360 81 CKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNA-KGDKNGIINVS 139 (198)
Q Consensus 81 ~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~-~Gk~~G~I~ls 139 (198)
|+-. .. .|+.+|.+.++|+++.+.+. --.|++|.+. .-...|-+-|.
T Consensus 1203 DYCF---AR----eDRvvGl~VlqL~~va~kGS-----~a~W~pLgrrihmDeTGLtiLR 1250 (1283)
T KOG1011|consen 1203 DYCF---AR----EDRVVGLAVLQLRSVADKGS-----CACWVPLGRRIHMDETGLTILR 1250 (1283)
T ss_pred hhee---ec----ccceeeeeeeehhhHhhcCc-----eeEeeeccccccccccchhHHH
Confidence 8643 22 39999999999999987642 2368988652 22345544333
No 125
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=97.71 E-value=0.0034 Score=48.29 Aligned_cols=119 Identities=17% Similarity=0.234 Sum_probs=79.7
Q ss_pred EEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCc--EEEeeeecCCCCCCeeeeEEEEEecC---------CCcEEEEEE
Q 040360 11 TIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFD--YCTTKVDESGGSHPSWNEKLVIELPM---------HARFITVQV 79 (198)
Q Consensus 11 ~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~--~~~T~v~~~~g~nP~WNE~f~f~v~~---------~~~~L~~eV 79 (198)
.+.|+|.+..++.. .....||.+.-+. .. ..+|.........-.|||.|.+.+.. +...+.|.|
T Consensus 8 ~~~l~i~~l~~~p~----~~~~v~v~wkr~~-~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v 82 (143)
T PF10358_consen 8 QFDLTIHELENLPS----SNGKVFVKWKRGD-KSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSV 82 (143)
T ss_pred EEEEEEEEeECcCC----CCCEEEEEEEECC-CCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEE
Confidence 57889999999974 2345566666655 22 34555444334678899999988742 134788999
Q ss_pred EeCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCccEEEEEEEEEeeeC
Q 040360 80 QCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDKNGIINVSVRSLKVA 146 (198)
Q Consensus 80 ~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~~G~I~lsi~~f~~~ 146 (198)
+.... .++ ...||++.|.|++++... .......|.|... -+.+.+|+|+|. +..-
T Consensus 83 ~~~~~---~~~----k~~lG~~~inLaey~~~~---~~~~~~~~~l~~~-~~~~a~L~isi~-~~~~ 137 (143)
T PF10358_consen 83 FEVDG---SGK----KKVLGKVSINLAEYANED---EEPITVRLLLKKC-KKSNATLSISIS-LSEL 137 (143)
T ss_pred EEecC---CCc----cceEEEEEEEHHHhhCcC---CCcEEEEEeCccC-CCCCcEEEEEEE-EEEC
Confidence 88644 341 359999999999998753 1124567777654 356667888877 6644
No 126
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=97.68 E-value=0.00059 Score=51.27 Aligned_cols=97 Identities=20% Similarity=0.248 Sum_probs=58.2
Q ss_pred EEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCC--------CcEEEEEEEeCCCCCCCCCCCCCCceeEEEEEeC
Q 040360 34 FAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMH--------ARFITVQVQCKSKSSSSGNNNNHNKIVGFARIPV 105 (198)
Q Consensus 34 Yvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~--------~~~L~~eV~~~~~~~~~g~~~~~d~~IG~a~IpL 105 (198)
||++.+.. .+.+.|.+.. |.+|..|-+.++.|..+ ...|.||+...-. .. -+.||.++|+|
T Consensus 2 Fct~dFyd-fEtq~Tpvv~--G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g---~d-----~~tla~~~i~l 70 (107)
T PF11618_consen 2 FCTYDFYD-FETQTTPVVR--GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG---SD-----FETLAAGQISL 70 (107)
T ss_dssp EEEE-STT----EE---EE--SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S---S------EEEEEEEEE--
T ss_pred EEEEEeec-eeeeccccee--CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc---CC-----eEEEEEEEeec
Confidence 78888877 6788999987 58999999999988764 3689999976433 22 67899999999
Q ss_pred ccccCCCCCCCceEeEEEEeeCCCCCccEEEEEEEEEeee
Q 040360 106 SDFIGGYAPENYLHFLSYRLRNAKGDKNGIINVSVRSLKV 145 (198)
Q Consensus 106 ~~l~~~~~~~~~~~~~sy~L~~~~Gk~~G~I~lsi~~f~~ 145 (198)
.++++... +. ...+..|.+.+|+.-|.|++.+| +..
T Consensus 71 ~~ll~~~~-~~--i~~~~~l~g~~~~~~g~l~y~~r-l~~ 106 (107)
T PF11618_consen 71 RPLLESNG-ER--IHGSATLVGVSGEDFGTLEYWIR-LRV 106 (107)
T ss_dssp SHHHH--S-----EEEEEEE-BSSS-TSEEEEEEEE-EEE
T ss_pred hhhhcCCC-ce--EEEEEEEeccCCCeEEEEEEEEE-ecC
Confidence 99996531 12 34567788888899999999999 764
No 127
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.68 E-value=6.4e-06 Score=72.47 Aligned_cols=96 Identities=19% Similarity=0.196 Sum_probs=74.4
Q ss_pred cceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEe--cC--CCcEEEEEEE
Q 040360 8 GYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIEL--PM--HARFITVQVQ 80 (198)
Q Consensus 8 ~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v--~~--~~~~L~~eV~ 80 (198)
+++.|..||..|++|+..+..+..|||+...+.+- ..+.+|++..++ .||.|||+..... .. +...+.+.|.
T Consensus 91 ~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~-lN~~w~etev~~~i~~~~~~~K~~Rk~vc 169 (362)
T KOG1013|consen 91 ESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNT-LNPEWNETEVYEGITDDDTHLKVLRKVVC 169 (362)
T ss_pred hhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccC-cCcceeccceecccccchhhhhhhheeec
Confidence 45789999999999998888899999999999873 245677887775 9999999877653 22 2345666665
Q ss_pred eCCCCCCCCCCCCCCceeEEEEEeCccccCC
Q 040360 81 CKSKSSSSGNNNNHNKIVGFARIPVSDFIGG 111 (198)
Q Consensus 81 ~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~ 111 (198)
++.. +. ++.++|+.+++|..+...
T Consensus 170 dn~~---~~----~~~sqGq~r~~lkKl~p~ 193 (362)
T KOG1013|consen 170 DNDK---KT----HNESQGQSRVSLKKLKPL 193 (362)
T ss_pred cCcc---cc----cccCcccchhhhhccChh
Confidence 6555 44 489999999999988654
No 128
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=97.57 E-value=4e-05 Score=75.31 Aligned_cols=90 Identities=9% Similarity=0.097 Sum_probs=72.4
Q ss_pred eEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecC-CCcEEEEEEEeCCCCCCC
Q 040360 10 RTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPM-HARFITVQVQCKSKSSSS 88 (198)
Q Consensus 10 ~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~-~~~~L~~eV~~~~~~~~~ 88 (198)
..++|.|+.|-+|...+..++.|||+.+.++.....-+..-+.+. .||++++-|.+.... .+..|.++||+.+. .
T Consensus 613 ~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~t-lnPVfgkmfel~~~lp~ek~l~v~vyd~D~---~ 688 (1105)
T KOG1326|consen 613 CLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNT-LNPVFGKMFELECLLPFEKDLIVEVYDHDL---E 688 (1105)
T ss_pred eeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCC-CCcHHHHHHHhhcccchhhcceeEEEEeec---c
Confidence 457899999999998888999999999999982112344456666 999999988877543 35789999999987 5
Q ss_pred CCCCCCCceeEEEEEeCcc
Q 040360 89 GNNNNHNKIVGFARIPVSD 107 (198)
Q Consensus 89 g~~~~~d~~IG~a~IpL~~ 107 (198)
+ .|+.||+.+|.|..
T Consensus 689 ~----~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 689 A----QDEKIGETTIDLEN 703 (1105)
T ss_pred c----ccchhhceehhhhh
Confidence 5 39999999999874
No 129
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.37 E-value=0.00035 Score=61.69 Aligned_cols=86 Identities=10% Similarity=0.096 Sum_probs=69.2
Q ss_pred ceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEecCC---CcEEEEEEEeC
Q 040360 9 YRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIELPMH---ARFITVQVQCK 82 (198)
Q Consensus 9 ~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v~~~---~~~L~~eV~~~ 82 (198)
..-|.|+++.+..|...+..+-.||||..++.++ ..+++|++.++. .||++||.|.|.+.+. ...+.|.|++.
T Consensus 232 ~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t-~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~ 310 (362)
T KOG1013|consen 232 TPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKT-LNPEFDEEFFYDIGPGDLAYKKVALSVGDY 310 (362)
T ss_pred CCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhcc-CCccccccccccCCccchhcceEEEeeccc
Confidence 3568999999999988888899999999999875 346789998887 9999999999999764 35788999887
Q ss_pred CCCCCCCCCCCCCceeEEEE
Q 040360 83 SKSSSSGNNNNHNKIVGFAR 102 (198)
Q Consensus 83 ~~~~~~g~~~~~d~~IG~a~ 102 (198)
+. |+ -++++|-..
T Consensus 311 ~~----G~---s~d~~GG~~ 323 (362)
T KOG1013|consen 311 DI----GK---SNDSIGGSM 323 (362)
T ss_pred CC----Cc---CccCCCccc
Confidence 75 32 156776543
No 130
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.36 E-value=0.00028 Score=51.58 Aligned_cols=87 Identities=11% Similarity=0.158 Sum_probs=63.3
Q ss_pred EEEEEEeeCCCCCC-CCCcCCcEEE--EEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCC---CcEEEEEEEeCCCCC
Q 040360 13 ELTVLSGEDLRIDR-RLIKKNAFAI--VQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMH---ARFITVQVQCKSKSS 86 (198)
Q Consensus 13 eVtVlsA~~L~~~~-~~~~~dpYvv--v~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~---~~~L~~eV~~~~~~~ 86 (198)
=|||+.++||.-.. ....+.-|++ +.+.. ...++|.+.+.. .||+++|+|.|.+... .-.|.|.|+....
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~k-pv~~KsS~rrgs-~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~~~-- 77 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPK-PVHFKSSAKEGS-NDIEFMETFVFAIKLQNLQTVRLVFKIQTQTP-- 77 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCC-CccccchhhcCC-CChhHHHHHHHHHHHhhccceEEEEEeeccCC--
Confidence 38999999996422 2234566764 44444 345677766654 9999999999998653 4579999998543
Q ss_pred CCCCCCCCCceeEEEEEeCccccC
Q 040360 87 SSGNNNNHNKIVGFARIPVSDFIG 110 (198)
Q Consensus 87 ~~g~~~~~d~~IG~a~IpL~~l~~ 110 (198)
+.+.||++.+.|.++-.
T Consensus 78 -------RKe~iG~~sL~l~s~ge 94 (103)
T cd08684 78 -------RKRTIGECSLSLRTLST 94 (103)
T ss_pred -------ccceeeEEEeecccCCH
Confidence 27899999999998854
No 131
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.28 E-value=0.00024 Score=63.68 Aligned_cols=109 Identities=13% Similarity=0.158 Sum_probs=82.3
Q ss_pred ceEEEEEEEEeeCCCC-CCCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEEeC-C
Q 040360 9 YRTIELTVLSGEDLRI-DRRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQCK-S 83 (198)
Q Consensus 9 ~~~LeVtVlsA~~L~~-~~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~~~-~ 83 (198)
.+.|+|.|+.|++|.. ......++|||.|.+-+. ..+.+|+...++ ..|.+-+.+.|.-+.....|.+.|+.. .
T Consensus 268 ~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT-~~plyqq~l~f~~sp~~k~Lq~tv~gdyg 346 (405)
T KOG2060|consen 268 KGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKT-LDPLYQQQLSFDQSPPGKYLQGTVWGDYG 346 (405)
T ss_pred cCceeEEEEecccccccCCcccccCceeEEEEcCCCceeccccccccccc-CchhhhhhhhhccCCCccEEEEEEecccc
Confidence 4789999999999964 233347899999999763 346788888876 566666678888877788999999953 3
Q ss_pred CCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCC
Q 040360 84 KSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAK 129 (198)
Q Consensus 84 ~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~ 129 (198)
. .. ++.|+|.++|-|.||.-.. .+-..||+|...+
T Consensus 347 R---md----~k~fmg~aqi~l~eL~ls~----~~~igwyKlfgss 381 (405)
T KOG2060|consen 347 R---MD----HKSFMGVAQIMLDELNLSS----SPVIGWYKLFGSS 381 (405)
T ss_pred c---cc----hHHHhhHHHHHhhhhcccc----ccceeeeeccCCc
Confidence 3 34 4889999999999996543 2346799987643
No 132
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=97.22 E-value=0.0085 Score=53.57 Aligned_cols=121 Identities=14% Similarity=0.177 Sum_probs=89.8
Q ss_pred EEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecC--------CCcEEEEEEEeCC
Q 040360 12 IELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPM--------HARFITVQVQCKS 83 (198)
Q Consensus 12 LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~--------~~~~L~~eV~~~~ 83 (198)
+.|.|+.+++.... -+..-.+..++++ ....|...... ..|.||..+.++++. +...|++++|--+
T Consensus 2 ivl~i~egr~F~~~---~~~~~vv~a~~ng--~~l~TDpv~~~-~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~ 75 (340)
T PF12416_consen 2 IVLSILEGRNFPQR---PRHPIVVEAKFNG--ESLETDPVPHT-ESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVD 75 (340)
T ss_pred EEEEEecccCCCCC---CCccEEEEEEeCC--ceeeecCCCCC-CCceeecceeeeccHHHHHHhhccCCceEEEEEEec
Confidence 56899999999743 2467789999998 78888866654 899999999999974 3468999999765
Q ss_pred CCCCCCCCCCCCceeEEEEEeCccc---cCCCCCCCceEeEEEEeeCCCCC---ccEEEEEEEEEeeeCCc
Q 040360 84 KSSSSGNNNNHNKIVGFARIPVSDF---IGGYAPENYLHFLSYRLRNAKGD---KNGIINVSVRSLKVAAD 148 (198)
Q Consensus 84 ~~~~~g~~~~~d~~IG~a~IpL~~l---~~~~~~~~~~~~~sy~L~~~~Gk---~~G~I~lsi~~f~~~~~ 148 (198)
. ..+ ..+.||.+.++|..+ ..+. ......||+|...+.+ .+=+|.+++. +..+..
T Consensus 76 ~--~~~----~re~iGyv~LdLRsa~~~~~~~---~~~~~~W~~LL~~~~~y~~~KPEl~l~l~-ie~~~~ 136 (340)
T PF12416_consen 76 G--STG----KRESIGYVVLDLRSAVVPQEKN---QKQKPKWYKLLSSSSKYKKHKPELLLSLS-IEDDSK 136 (340)
T ss_pred C--CCC----cceeccEEEEEccccccccccc---cccCCCeeEccccccccccCCccEEEEEE-Eecccc
Confidence 2 023 378999999999988 3331 1245679999986433 4557888888 776644
No 133
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=97.16 E-value=0.0038 Score=50.56 Aligned_cols=71 Identities=13% Similarity=0.085 Sum_probs=49.2
Q ss_pred eEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCc----EEEeeeecCCCCCCeeeeEEEEEecC----CCcEEEEEEEe
Q 040360 10 RTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFD----YCTTKVDESGGSHPSWNEKLVIELPM----HARFITVQVQC 81 (198)
Q Consensus 10 ~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~----~~~T~v~~~~g~nP~WNE~f~f~v~~----~~~~L~~eV~~ 81 (198)
..+.|+|+++++|.. .....+-||.+.+-...+ ...|+...- ..++.|||.+.|++.- .+..|.|.||+
T Consensus 8 ~~f~i~i~~~~~~~~--~~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~-~~~~~Wnewl~F~I~i~dLPr~ArLciti~~ 84 (173)
T cd08693 8 EKFSITLHKISNLNA--AERTMKVGVQAGLFHGGESLCKTVKTSEVSG-KNDPVWNETLEFDINVCDLPRMARLCFAIYE 84 (173)
T ss_pred CCEEEEEEEeccCcc--CCCCceEEEEEEEEECCEEccCceEccccCC-CCccccceeEEcccchhcCChhHeEEEEEEE
Confidence 579999999999975 223467788776654212 234544332 2679999999998753 25789999998
Q ss_pred CC
Q 040360 82 KS 83 (198)
Q Consensus 82 ~~ 83 (198)
..
T Consensus 85 ~~ 86 (173)
T cd08693 85 VS 86 (173)
T ss_pred ec
Confidence 54
No 134
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=97.15 E-value=0.0037 Score=50.00 Aligned_cols=90 Identities=11% Similarity=0.192 Sum_probs=58.3
Q ss_pred eEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcE----EEeeeecCCCCCCeeeeEEEEEecC----CCcEEEEEEEe
Q 040360 10 RTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDY----CTTKVDESGGSHPSWNEKLVIELPM----HARFITVQVQC 81 (198)
Q Consensus 10 ~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~----~~T~v~~~~g~nP~WNE~f~f~v~~----~~~~L~~eV~~ 81 (198)
+.++|+|++++++.... ..|-||.+++-...+. ..|+-.. ..++.|||-+.|++.- .++.|.|.||+
T Consensus 8 ~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~--~~~~~WnEwL~fpI~i~dLPr~ArL~iti~~ 82 (158)
T cd08398 8 SNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVP--CSNPRWNEWLDYDIYIPDLPRSARLCLSICS 82 (158)
T ss_pred CCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccC--CCCCccceeEEcccchhcCChhheEEEEEEE
Confidence 57899999999997532 3588888877552122 2333222 2689999999998743 25789999998
Q ss_pred CCCCCCCCCCCCCCceeEEEEEeCcc
Q 040360 82 KSKSSSSGNNNNHNKIVGFARIPVSD 107 (198)
Q Consensus 82 ~~~~~~~g~~~~~d~~IG~a~IpL~~ 107 (198)
... ......+...||.+.++|=+
T Consensus 83 ~~~---~~~~k~~~~~iG~~ni~LFd 105 (158)
T cd08398 83 VKG---RKGAKEEHCPLAWGNINLFD 105 (158)
T ss_pred Eec---ccCCCCceEEEEEEEEEEEC
Confidence 643 11000013457888777755
No 135
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=96.79 E-value=0.044 Score=43.83 Aligned_cols=127 Identities=17% Similarity=0.227 Sum_probs=90.1
Q ss_pred CCcceEEEEEEEEeeCCCCC--C--CCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCC----------
Q 040360 6 SSGYRTIELTVLSGEDLRID--R--RLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMH---------- 71 (198)
Q Consensus 6 ~m~~~~LeVtVlsA~~L~~~--~--~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~---------- 71 (198)
.-..+-|.|.|+.++-.-.. . ...+.--++-+.+.+ ++++|+.+... .+|.++|.|.|+++.+
T Consensus 5 ~~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~--QRF~S~~Vp~~-~eP~f~e~Flf~l~~~~~~~~~~~~~ 81 (156)
T PF15627_consen 5 DPGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRG--QRFRSKPVPCA-CEPDFNEEFLFELPRDSFGAGSTATT 81 (156)
T ss_pred CCCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecC--ceEecCCcccc-cCCCCCCcEEEEecccccccccchhH
Confidence 34456799999999877421 1 122333455566666 99999988886 9999999999999753
Q ss_pred ----CcEEEEEEEeCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCC---ccEEEEEEEEEee
Q 040360 72 ----ARFITVQVQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGD---KNGIINVSVRSLK 144 (198)
Q Consensus 72 ----~~~L~~eV~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk---~~G~I~lsi~~f~ 144 (198)
...|++-|.-.+. .+ ..+++|+-.+.=..++... ... .....+|...... +.|.|++.+. +.
T Consensus 82 lls~~~pihivli~~d~---~~----~~~Lv~s~~ldWR~vL~s~--~~~-~~~~vEL~G~~~e~kv~~GiL~l~lE-Ll 150 (156)
T PF15627_consen 82 LLSISDPIHIVLIRTDP---SG----ETTLVGSHFLDWRKVLCSG--NGS-TSFTVELCGVGPESKVPVGILDLRLE-LL 150 (156)
T ss_pred hhcCCCceEEEEEEecC---CC----ceEeeeeceehHHHHhccC--CCc-cceeEEEeccCCCCccceeEEEEEEE-ee
Confidence 1468888877665 44 2689999999888887653 211 1467778775544 8999999999 76
Q ss_pred eC
Q 040360 145 VA 146 (198)
Q Consensus 145 ~~ 146 (198)
+.
T Consensus 151 P~ 152 (156)
T PF15627_consen 151 PN 152 (156)
T ss_pred cC
Confidence 54
No 136
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=96.79 E-value=0.016 Score=45.65 Aligned_cols=92 Identities=14% Similarity=0.230 Sum_probs=59.5
Q ss_pred eEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCC----cEEEeeeecCCCCCCeeeeEEEEEecC----CCcEEEEEEEe
Q 040360 10 RTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSF----DYCTTKVDESGGSHPSWNEKLVIELPM----HARFITVQVQC 81 (198)
Q Consensus 10 ~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~----~~~~T~v~~~~g~nP~WNE~f~f~v~~----~~~~L~~eV~~ 81 (198)
..+.|+|....++... .....+-||.+++-... ....|+.... ..++.|||.+.|++.- .+..|.|.||+
T Consensus 8 ~~~~i~i~~~~~~~~~-~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~-~~~~~Wne~l~F~i~~~~LP~~arL~itl~~ 85 (156)
T cd08380 8 FNLRIKIHGITNINLL-DSEDLKLYVRVQLYHGGEPLCPPQSTKKVPF-STSVTWNEWLTFDILISDLPREARLCLSIYA 85 (156)
T ss_pred CCeEEEEEeecccccc-CCCceeEEEEEEEEECCEEccCceeccCCcC-CCCCcccceeEccchhhcCChhheEEEEEEE
Confidence 4688889998888641 12346778877665421 1224443332 2689999999998642 25789999998
Q ss_pred CCCCCCCCCCCCCCceeEEEEEeCccc
Q 040360 82 KSKSSSSGNNNNHNKIVGFARIPVSDF 108 (198)
Q Consensus 82 ~~~~~~~g~~~~~d~~IG~a~IpL~~l 108 (198)
... .+ +.++..||++.++|=+.
T Consensus 86 ~~~---~~--~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 86 VSE---PG--SKKEVPLGWVNVPLFDY 107 (156)
T ss_pred Eec---CC--CCcceEEEEEeEEeEcc
Confidence 654 22 00157889888888553
No 137
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=96.77 E-value=0.017 Score=42.42 Aligned_cols=66 Identities=15% Similarity=0.218 Sum_probs=51.0
Q ss_pred CcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEEeCCCCCCCCCCCCCCceeEEEEEeCccc
Q 040360 29 IKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQCKSKSSSSGNNNNHNKIVGFARIPVSDF 108 (198)
Q Consensus 29 ~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~~~~~~~~~g~~~~~d~~IG~a~IpL~~l 108 (198)
+..+..|++.+++ .....|.-... .+..||++|.|+++. ++.|.|.||-++. ..+=|...+.|.|.
T Consensus 7 ~~~eV~avLklDn-~~VgqT~Wk~~--s~q~WDQ~Fti~LdR-sRELEI~VywrD~----------RslCav~~lrLEd~ 72 (98)
T cd08687 7 GCSEVSAVLKLDN-TVVGQTQWKPK--SNQAWDQSFTLELER-SRELEIAVYWRDW----------RSLCAVKFLKLEDE 72 (98)
T ss_pred cccceEEEEEEcC-eEEeecccccc--ccccccceeEEEeec-ccEEEEEEEEecc----------hhhhhheeeEhhhh
Confidence 3468889999998 55566665443 488999999999987 5899999998876 23667778888884
No 138
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=96.51 E-value=0.012 Score=47.35 Aligned_cols=77 Identities=12% Similarity=0.018 Sum_probs=51.4
Q ss_pred cceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCc----EEEeeeec--C-CCCCCeeeeEEEEEecC----CCcEEE
Q 040360 8 GYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFD----YCTTKVDE--S-GGSHPSWNEKLVIELPM----HARFIT 76 (198)
Q Consensus 8 ~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~----~~~T~v~~--~-~g~nP~WNE~f~f~v~~----~~~~L~ 76 (198)
....+.|+|.++.++.........|-|+.+++-...+ ...|+... + -...+.|||.+.|++.- .+..|.
T Consensus 6 v~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~ 85 (171)
T cd04012 6 VTDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLV 85 (171)
T ss_pred ccccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEE
Confidence 3467999999999998665444578888887754212 22443221 1 11367799999998742 257899
Q ss_pred EEEEeCCC
Q 040360 77 VQVQCKSK 84 (198)
Q Consensus 77 ~eV~~~~~ 84 (198)
|.+|+...
T Consensus 86 itl~~~~~ 93 (171)
T cd04012 86 LTLYGTTS 93 (171)
T ss_pred EEEEEEec
Confidence 99998653
No 139
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=96.25 E-value=0.011 Score=52.40 Aligned_cols=116 Identities=14% Similarity=0.208 Sum_probs=77.2
Q ss_pred ceEEEEEEEEeeCCCCCC--CCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEEeCCCCC
Q 040360 9 YRTIELTVLSGEDLRIDR--RLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQCKSKSS 86 (198)
Q Consensus 9 ~~~LeVtVlsA~~L~~~~--~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~~~~~~~ 86 (198)
+|.|-++++.+++|+... +....+-||++.++. ..+.+|.+... +.-=.|.|+|.+++-. ...|.+-||.+..
T Consensus 50 tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~dr-qh~aRt~vrs~-~~~f~w~e~F~~Dvv~-~~vl~~lvySW~p-- 124 (442)
T KOG1452|consen 50 TGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDR-QHPARTRVRSS-GPGFAWAEDFKHDVVN-IEVLHYLVYSWPP-- 124 (442)
T ss_pred cceEEEEEecccccccChhccCceeeeeeeeeecc-cCccccccccC-CCCccchhhceeeccc-ceeeeEEEeecCc--
Confidence 589999999999998643 345678999999998 45667766543 4667799999988865 4689999998875
Q ss_pred CCCCCCCCCce--eEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCccEEEEEEEEEeeeC
Q 040360 87 SSGNNNNHNKI--VGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDKNGIINVSVRSLKVA 146 (198)
Q Consensus 87 ~~g~~~~~d~~--IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~~G~I~lsi~~f~~~ 146 (198)
-. +.|+ .| .|.+.-+... .++ +.+.+. -+++|.+-+.+. |.++
T Consensus 125 -q~----RHKLC~~g--~l~~~~v~rq-spd---~~~Al~-----lePrgq~~~r~~-~~Dp 169 (442)
T KOG1452|consen 125 -QR----RHKLCHLG--LLEAFVVDRQ-SPD---RVVALY-----LEPRGQPPLRLP-LADP 169 (442)
T ss_pred -hh----hccccccc--hhhhhhhhhc-CCc---ceeeee-----cccCCCCceecc-cCCh
Confidence 22 1444 34 2222222222 122 222332 367888888888 7765
No 140
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=96.20 E-value=0.045 Score=44.31 Aligned_cols=59 Identities=20% Similarity=0.339 Sum_probs=34.8
Q ss_pred cEEEeeeecCCCCCCeeeeEEEEEecCC---CcEEEEEEEeCCCCCCCCCCCCCCceeEEEEEeCcc
Q 040360 44 DYCTTKVDESGGSHPSWNEKLVIELPMH---ARFITVQVQCKSKSSSSGNNNNHNKIVGFARIPVSD 107 (198)
Q Consensus 44 ~~~~T~v~~~~g~nP~WNE~f~f~v~~~---~~~L~~eV~~~~~~~~~g~~~~~d~~IG~a~IpL~~ 107 (198)
..+.|.|.... .+|.|+|+|.+.||.. ...|.|++++.... .++ .+++.+|.+-+||-+
T Consensus 59 ~~~~S~v~yh~-k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~--~~~--~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 59 TSYYSSVYYHN-KNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCK--ESK--EKSKPFGYAFLPLMD 120 (184)
T ss_dssp S-EE----TT--SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---S--SSS---SS-EEEEEEEESB-
T ss_pred eEEEEEEEecC-CCCCccEEEEEEcCchhcccEEEEEEEEeeccc--ccc--CccceeEEEEEEeee
Confidence 34566666665 8999999999999864 46899999986541 110 012799999999998
No 141
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=96.10 E-value=0.23 Score=41.23 Aligned_cols=59 Identities=12% Similarity=0.313 Sum_probs=42.1
Q ss_pred cEEEeeeecCCCCCCeeeeEEEEEecCC---CcEEEEEEEeCCCCCCCCCCCCCCceeEEEEEeCc
Q 040360 44 DYCTTKVDESGGSHPSWNEKLVIELPMH---ARFITVQVQCKSKSSSSGNNNNHNKIVGFARIPVS 106 (198)
Q Consensus 44 ~~~~T~v~~~~g~nP~WNE~f~f~v~~~---~~~L~~eV~~~~~~~~~g~~~~~d~~IG~a~IpL~ 106 (198)
..++|-|.... .+|.|||++.+.||.+ ...|.|++++.... ..+ +...+.+|.+-+||-
T Consensus 53 se~~S~V~Yh~-~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~--~~k-d~~e~pfg~s~lpL~ 114 (196)
T cd08694 53 DEYKSVIYYQV-DKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSN--EAK-DKSEKPFALSFVKLM 114 (196)
T ss_pred eeEEEEEEeec-CCCCCceeEEEecChhhCCCeEEEEEEEeeccc--ccc-CCCCCceEEEEEeee
Confidence 45677775544 7999999999999863 57899999886430 111 001367999999996
No 142
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=96.05 E-value=0.014 Score=54.78 Aligned_cols=84 Identities=15% Similarity=0.244 Sum_probs=62.0
Q ss_pred EEeeCCCCCCCCCcCCcEEEEEEC--CC--CcEEEeeeecCCCCCCeeeeEEEEEec-----CCCcEEEEEEEeCCCCCC
Q 040360 17 LSGEDLRIDRRLIKKNAFAIVQTD--TS--FDYCTTKVDESGGSHPSWNEKLVIELP-----MHARFITVQVQCKSKSSS 87 (198)
Q Consensus 17 lsA~~L~~~~~~~~~dpYvvv~~~--~~--~~~~~T~v~~~~g~nP~WNE~f~f~v~-----~~~~~L~~eV~~~~~~~~ 87 (198)
..|+.|..++.+++.|||..+.-- .. ...++|.+.+++ ++|.|-+ |.+.+. ...+.+.++++|.+.
T Consensus 143 ~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~-l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~--- 217 (529)
T KOG1327|consen 143 FRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNT-LNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDS--- 217 (529)
T ss_pred eeeeecCcccccccCCcceEEEEecCCCceeeccccceeccC-CCCcccc-cccchhhhcccCCCCceEEEEeccCC---
Confidence 336667667788999999765432 21 235688888887 9999987 444432 235789999999887
Q ss_pred CCCCCCCCceeEEEEEeCcccc
Q 040360 88 SGNNNNHNKIVGFARIPVSDFI 109 (198)
Q Consensus 88 ~g~~~~~d~~IG~a~IpL~~l~ 109 (198)
.++ +++||++..++.++.
T Consensus 218 ~~~----~~~ig~~~tt~~~~~ 235 (529)
T KOG1327|consen 218 NGK----HDLIGKFQTTLSELQ 235 (529)
T ss_pred CCC----cCceeEecccHHHhc
Confidence 663 799999999999885
No 143
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=96.03 E-value=0.076 Score=43.35 Aligned_cols=71 Identities=14% Similarity=0.229 Sum_probs=44.9
Q ss_pred eEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCc---EEEeeeecCCCCCCeeeeEEEEEecC----CCcEEEEEEEeC
Q 040360 10 RTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFD---YCTTKVDESGGSHPSWNEKLVIELPM----HARFITVQVQCK 82 (198)
Q Consensus 10 ~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~---~~~T~v~~~~g~nP~WNE~f~f~v~~----~~~~L~~eV~~~ 82 (198)
..++|+|++++.+... ......-||.+.+-...+ ..+|....- +.++.|||-+.|++.- .+..|.|.||+.
T Consensus 10 ~~friki~~~~~~~~~-~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~-~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~ 87 (178)
T cd08399 10 RKFRVKILGIDIPVLP-RNTDLTVFVEANIQHGQQVLCQRRTSPKPF-TEEVLWNTWLEFDIKIKDLPKGALLNLQIYCG 87 (178)
T ss_pred CCEEEEEEeecccCcC-CCCceEEEEEEEEEECCeecccceeeccCC-CCCccccccEECccccccCChhhEEEEEEEEE
Confidence 5688999999855422 222345666665543211 224443333 3689999999988743 257899999985
No 144
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=95.92 E-value=0.2 Score=41.26 Aligned_cols=58 Identities=19% Similarity=0.427 Sum_probs=43.0
Q ss_pred cEEEeeeecCCCCCCeeeeEEEEEecCC---CcEEEEEEEeCCCCCCCCCCCCCCceeEEEEEeCcc
Q 040360 44 DYCTTKVDESGGSHPSWNEKLVIELPMH---ARFITVQVQCKSKSSSSGNNNNHNKIVGFARIPVSD 107 (198)
Q Consensus 44 ~~~~T~v~~~~g~nP~WNE~f~f~v~~~---~~~L~~eV~~~~~~~~~g~~~~~d~~IG~a~IpL~~ 107 (198)
..++|-|.... .+|.|||++.+.||.+ ...|.|++++... ..+ ...+.+|.+-+||-+
T Consensus 53 se~~S~V~yH~-~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~---~~k--~~~~pfg~s~lpL~~ 113 (189)
T cd08695 53 SEYRSFVLYHN-NSPRWNETIKLPIPIDKFRGSHLRFEFRHCST---KDK--GEKKLFGFSFVPLMR 113 (189)
T ss_pred ceEEEEEEEcC-CCCCCceeEEEecChhhCCCeeEEEEEEEeee---ccC--CCCCceEEEEEeecc
Confidence 45677777665 7999999999999863 5789999988643 111 013789999999953
No 145
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=95.89 E-value=0.002 Score=63.75 Aligned_cols=113 Identities=12% Similarity=0.102 Sum_probs=84.0
Q ss_pred EEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEe---cCC-------CcEEEEEEEe
Q 040360 12 IELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIEL---PMH-------ARFITVQVQC 81 (198)
Q Consensus 12 LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v---~~~-------~~~L~~eV~~ 81 (198)
|++.|-+|+.|...++.+..|||+.|.+-+ +.+.|-+..++ .||.||+++.|.- ..+ -..+.||||+
T Consensus 208 lR~yiyQar~L~a~dk~~~sdp~a~v~f~~--qs~~T~~v~~t-l~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd 284 (1105)
T KOG1326|consen 208 LRSYIYQARALGAPDKDDESDPDAAVEFCG--QSKETEVVPGT-LNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYD 284 (1105)
T ss_pred hHHHHHHHHhhcCCCcccCCCchhhhhccc--ccceeEeecCc-CCCCccceeeccceeecCccchhhcCCCeEEEEeeh
Confidence 445567788887777778899999999988 78899999886 9999999999852 221 1478999999
Q ss_pred CCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCccEEEEEEEE
Q 040360 82 KSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDKNGIINVSVR 141 (198)
Q Consensus 82 ~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~~G~I~lsi~ 141 (198)
.+. .++ ++++|.......=..+- | +..|+++.+ .+...|.+.++..
T Consensus 285 ~dr---~g~----~ef~gr~~~~p~V~~~~--p----~lkw~p~~r-g~~l~gd~l~a~e 330 (1105)
T KOG1326|consen 285 LDR---SGI----NEFKGRKKQRPYVMVQC--P----ALKWVPTMR-GAFLDGDVLIAAE 330 (1105)
T ss_pred hhh---hch----HHhhcccccceEEEecC--C----ccceEEeec-ccccccchhHHHH
Confidence 988 774 99999876665534331 2 235777764 4567788777764
No 146
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=95.65 E-value=0.047 Score=43.67 Aligned_cols=71 Identities=14% Similarity=0.158 Sum_probs=48.1
Q ss_pred CcCCcEEEEEECCCCcE----EEeeeecCCCCCCeeeeEEEEEecC----CCcEEEEEEEeCCCCCCCCCCCCCCceeEE
Q 040360 29 IKKNAFAIVQTDTSFDY----CTTKVDESGGSHPSWNEKLVIELPM----HARFITVQVQCKSKSSSSGNNNNHNKIVGF 100 (198)
Q Consensus 29 ~~~dpYvvv~~~~~~~~----~~T~v~~~~g~nP~WNE~f~f~v~~----~~~~L~~eV~~~~~~~~~g~~~~~d~~IG~ 100 (198)
...|-||.+++-...+. ..|+...- +..+.|||-+.|++.- .++.|.|+||+... .+ +...||.
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f-~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~---~~----~~~~vg~ 99 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPF-KNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSG---TG----KAVPFGG 99 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCC-CCCcccceeEEcccchhcCChhheEEEEEEEecC---CC----CceEEEE
Confidence 35788988877652122 24433332 3678899999998743 25799999999764 33 2668898
Q ss_pred EEEeCcc
Q 040360 101 ARIPVSD 107 (198)
Q Consensus 101 a~IpL~~ 107 (198)
+.++|=+
T Consensus 100 ~~~~lFd 106 (159)
T cd08397 100 TTLSLFN 106 (159)
T ss_pred EEEeeEC
Confidence 8888744
No 147
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=95.33 E-value=0.22 Score=38.54 Aligned_cols=70 Identities=16% Similarity=0.270 Sum_probs=43.1
Q ss_pred CcEEEEEECCC----C-cEEEeeeecCCCCCCeeeeEEEEEecC----CCcEEEEEEEeCCCCCCCCCCCCCC----cee
Q 040360 32 NAFAIVQTDTS----F-DYCTTKVDESGGSHPSWNEKLVIELPM----HARFITVQVQCKSKSSSSGNNNNHN----KIV 98 (198)
Q Consensus 32 dpYvvv~~~~~----~-~~~~T~v~~~~g~nP~WNE~f~f~v~~----~~~~L~~eV~~~~~~~~~g~~~~~d----~~I 98 (198)
+-||.+++-.. . ....|+...-+-.++.|||.+.|++.- .+..|.|.|+.... ... + ..|
T Consensus 3 ~~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~---~~~----~~~~~~~l 75 (142)
T PF00792_consen 3 KLYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDS---KKK----SKKKKVPL 75 (142)
T ss_dssp EEEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEEC---STT----T--EEEEE
T ss_pred eEEEEEEEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecC---CCc----cccceeEE
Confidence 34555555432 1 122455443222699999999998742 36799999998654 221 3 689
Q ss_pred EEEEEeCccc
Q 040360 99 GFARIPVSDF 108 (198)
Q Consensus 99 G~a~IpL~~l 108 (198)
|++.++|=+.
T Consensus 76 gw~n~~lFd~ 85 (142)
T PF00792_consen 76 GWVNLPLFDY 85 (142)
T ss_dssp EEEEEESB-T
T ss_pred EEEEEEeECC
Confidence 9999988665
No 148
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=94.93 E-value=0.13 Score=41.47 Aligned_cols=57 Identities=21% Similarity=0.378 Sum_probs=40.5
Q ss_pred EEeeeecCCCCCCeeeeEEEEEecCC---CcEEEEEEEeCCCCCCCCC-CCCCCceeEEEEEeCcc
Q 040360 46 CTTKVDESGGSHPSWNEKLVIELPMH---ARFITVQVQCKSKSSSSGN-NNNHNKIVGFARIPVSD 107 (198)
Q Consensus 46 ~~T~v~~~~g~nP~WNE~f~f~v~~~---~~~L~~eV~~~~~~~~~g~-~~~~d~~IG~a~IpL~~ 107 (198)
++|-+. .. .+|.|+|+|.+.||.. ...|.|++++... ..+ ++...+.+|.+-+||-+
T Consensus 55 ~~sv~~-~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~---~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 55 YTSVVY-YH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSS---KKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEE-cC-CCCCCceeEEEecCCccCCCeEEEEEEEcccc---ccccCCCccceEEEEEEeccc
Confidence 344444 44 7999999999999863 5689999998653 110 11236789999999986
No 149
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=94.47 E-value=0.18 Score=41.25 Aligned_cols=60 Identities=15% Similarity=0.271 Sum_probs=42.7
Q ss_pred cEEEeeeecCCCCCCeeeeEEEEEecCC---CcEEEEEEEeCCCCCCCCC--CCCCCceeEEEEEeCcc
Q 040360 44 DYCTTKVDESGGSHPSWNEKLVIELPMH---ARFITVQVQCKSKSSSSGN--NNNHNKIVGFARIPVSD 107 (198)
Q Consensus 44 ~~~~T~v~~~~g~nP~WNE~f~f~v~~~---~~~L~~eV~~~~~~~~~g~--~~~~d~~IG~a~IpL~~ 107 (198)
....|.|...+ .+|.|+|+|.+.||.. ...|.|+.++... ..+ ++...+.+|.+-+||-+
T Consensus 54 ~~~~S~V~yHn-k~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~---~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 54 TEAYTAVTYHN-KSPDFYDEIKIKLPADLTDNHHLLFTFYHISC---QKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eeEEEEEEEeC-CCCcccceEEEEcCCCCCCCeEEEEEEEEeec---cccccCCCccceEEEEEEeeec
Confidence 45677776665 8999999999999863 4689999988543 111 01124679999999964
No 150
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=93.84 E-value=0.39 Score=35.12 Aligned_cols=73 Identities=11% Similarity=0.092 Sum_probs=47.3
Q ss_pred eEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCc----EEEeeeecCCCCCCeeeeEEEEEecC----CCcEEEEEEEe
Q 040360 10 RTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFD----YCTTKVDESGGSHPSWNEKLVIELPM----HARFITVQVQC 81 (198)
Q Consensus 10 ~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~----~~~T~v~~~~g~nP~WNE~f~f~v~~----~~~~L~~eV~~ 81 (198)
+.+.+++...+++.........+-||.+++-...+ ...|+... ....+.|||-+.|++.- .+..|.|.||+
T Consensus 11 ~~~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~-~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~ 89 (100)
T smart00142 11 RNLVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKP-FFPSVKWNEWLTFPIQISDLPREARLCITIYE 89 (100)
T ss_pred CceEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccC-CCCCcccceeEEccCchhcCChhhEEEEEEEE
Confidence 34677888888886544332348888887754212 22344332 23568999999998743 25789999997
Q ss_pred CC
Q 040360 82 KS 83 (198)
Q Consensus 82 ~~ 83 (198)
..
T Consensus 90 ~~ 91 (100)
T smart00142 90 VK 91 (100)
T ss_pred ee
Confidence 53
No 151
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=93.21 E-value=0.5 Score=38.82 Aligned_cols=63 Identities=17% Similarity=0.294 Sum_probs=43.5
Q ss_pred cEEEeeeecCCCCCCeeeeEEEEEecCC---CcEEEEEEEeCCCCCCCC--CCCCCCceeEEEEEeCcc
Q 040360 44 DYCTTKVDESGGSHPSWNEKLVIELPMH---ARFITVQVQCKSKSSSSG--NNNNHNKIVGFARIPVSD 107 (198)
Q Consensus 44 ~~~~T~v~~~~g~nP~WNE~f~f~v~~~---~~~L~~eV~~~~~~~~~g--~~~~~d~~IG~a~IpL~~ 107 (198)
....|.|...+ .+|.|+|++.+.||.+ ...|.|+.++........ +++...+.+|.+-+||-+
T Consensus 56 ~~~~s~V~yh~-k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 56 TSAYAAVLHHN-QNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred eEEEEEEEEcC-CCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 35567777666 8999999999999863 468999999865200000 111124679999999976
No 152
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=93.04 E-value=0.66 Score=37.23 Aligned_cols=74 Identities=12% Similarity=0.122 Sum_probs=56.6
Q ss_pred CcCCcEEEEEECCCCcEEEeeeecC-CCCCCeeeeEEEEEecCCCcEEEEEEEeCCCCCCCCCCCCCCceeEEEEEeCcc
Q 040360 29 IKKNAFAIVQTDTSFDYCTTKVDES-GGSHPSWNEKLVIELPMHARFITVQVQCKSKSSSSGNNNNHNKIVGFARIPVSD 107 (198)
Q Consensus 29 ~~~dpYvvv~~~~~~~~~~T~v~~~-~g~nP~WNE~f~f~v~~~~~~L~~eV~~~~~~~~~g~~~~~d~~IG~a~IpL~~ 107 (198)
.+..-|++|.+++ ....+|+...- ....=.+||.|.+.+..-=+.|.++||.... .. +.+|+++.||+..
T Consensus 35 ~~~~~~ikl~~N~-k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~---~~-----~~~la~v~vpvP~ 105 (168)
T PF15625_consen 35 QKTRYYIKLFFND-KEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSG---LS-----DRLLAEVFVPVPG 105 (168)
T ss_pred hheeEEEEEEECC-EEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccC---cc-----ceEEEEEEeeCCC
Confidence 4567899999998 56667765443 3356669999999986544789999998765 45 8999999999987
Q ss_pred ccCC
Q 040360 108 FIGG 111 (198)
Q Consensus 108 l~~~ 111 (198)
....
T Consensus 106 ~~~~ 109 (168)
T PF15625_consen 106 STVH 109 (168)
T ss_pred Cccc
Confidence 6544
No 153
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=92.07 E-value=0.49 Score=46.98 Aligned_cols=89 Identities=16% Similarity=0.172 Sum_probs=69.2
Q ss_pred CCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEEeCCCCCCCCCCCCCCceeEEEEEeCccccC
Q 040360 31 KNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQCKSKSSSSGNNNNHNKIVGFARIPVSDFIG 110 (198)
Q Consensus 31 ~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~ 110 (198)
+++|+++.+.. ..-.+|....+.-.+|.|.+.|.+.....+..+.+.|.+.+. .| ..+.+|.++++.-.+..
T Consensus 138 ~e~Ylt~~l~~-~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~---~G----~s~~w~~v~~s~~~~~~ 209 (887)
T KOG1329|consen 138 LENYLTVVLHK-ARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARV---PG----WSKRWGRVKISFLQYCS 209 (887)
T ss_pred ccchheeeech-hhhhchhhhhcccccchhhhhccccccccccEEEEeecCCcc---cc----ceeEEEEeccchhhhhc
Confidence 48999999987 344567666655589999999988887778899999988776 66 27899999999999988
Q ss_pred CCCCCCceEeEEEEeeCCCCCc
Q 040360 111 GYAPENYLHFLSYRLRNAKGDK 132 (198)
Q Consensus 111 ~~~~~~~~~~~sy~L~~~~Gk~ 132 (198)
+... ..+|.+.+.++++
T Consensus 210 ~~~~-----~~~~~Il~~d~~~ 226 (887)
T KOG1329|consen 210 GHRI-----GGWFPILDNDGKP 226 (887)
T ss_pred cccc-----cceeeeeccCCcc
Confidence 7432 3578877766653
No 154
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=88.51 E-value=8.9 Score=34.84 Aligned_cols=97 Identities=14% Similarity=0.141 Sum_probs=67.6
Q ss_pred cCCcEEEEEECCCCcEEEeeeecCCCCCC-eeeeEEEEEecCCCcEEEEEEEeCCCCCCCCCCCCCCceeEEEEEeCc-c
Q 040360 30 KKNAFAIVQTDTSFDYCTTKVDESGGSHP-SWNEKLVIELPMHARFITVQVQCKSKSSSSGNNNNHNKIVGFARIPVS-D 107 (198)
Q Consensus 30 ~~dpYvvv~~~~~~~~~~T~v~~~~g~nP-~WNE~f~f~v~~~~~~L~~eV~~~~~~~~~g~~~~~d~~IG~a~IpL~-~ 107 (198)
...-|+.++.|. ..++|..+..+-.+- .=.|...+.+..-...|++.+|-+.. .+ ..-||.+.|.+. +
T Consensus 73 ~khiyIef~~Gr--~d~TT~~IpTsKK~RI~IqqRV~IkIRQcDnTLkI~lfKKkL---vk-----k~hIgdI~InIn~d 142 (508)
T PTZ00447 73 YKHIYIIFSTDK--YDFTTDEIPTNKKNRIHIDQRVDIKIRQCDETLRVDLFTTKL---TK-----KVHIGQIKIDINAS 142 (508)
T ss_pred ceeEEEEEEcCc--eEEEccccccCcCceEEEeeeeeeeeeecCceEEEEEEeccc---cc-----eeEEEEEEecccHH
Confidence 467899999988 666774333221222 23344444444434689999998764 45 788999999998 5
Q ss_pred ccCCCCCCCceEeEEEEeeCCCCCccEEEEEEEE
Q 040360 108 FIGGYAPENYLHFLSYRLRNAKGDKNGIINVSVR 141 (198)
Q Consensus 108 l~~~~~~~~~~~~~sy~L~~~~Gk~~G~I~lsi~ 141 (198)
+..+..|. ..||-+. ++|+..+.|.||+.
T Consensus 143 IIdk~FPK----nkWy~c~-kDGq~~cRIqLSFh 171 (508)
T PTZ00447 143 VISKSFPK----NEWFVCF-KDGQEICKVQMSFY 171 (508)
T ss_pred HHhccCCc----cceEEEe-cCCceeeeEEEEeh
Confidence 66665554 4699884 68999999999976
No 155
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=88.23 E-value=16 Score=33.87 Aligned_cols=115 Identities=17% Similarity=0.205 Sum_probs=65.9
Q ss_pred cCCcEEEEEECCCCcEEEeee--ecCCCCCC--eeeeEEEEEecCC--------------CcEEEEEEEeCCCCCCCCCC
Q 040360 30 KKNAFAIVQTDTSFDYCTTKV--DESGGSHP--SWNEKLVIELPMH--------------ARFITVQVQCKSKSSSSGNN 91 (198)
Q Consensus 30 ~~dpYvvv~~~~~~~~~~T~v--~~~~g~nP--~WNE~f~f~v~~~--------------~~~L~~eV~~~~~~~~~g~~ 91 (198)
....||.|++.+ ...+++.+ ......++ .=+-.-.|.|+.. ...|.|.||.-.....-|..
T Consensus 35 sspCfC~IrL~~-fP~Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~Gr~G~tCGv~ 113 (460)
T PF06219_consen 35 SSPCFCEIRLKG-FPSQTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTGRRGSTCGVG 113 (460)
T ss_pred CCCeEEEEecCC-CCccceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEECCCCCccccc
Confidence 457899999988 44433332 22222232 1222345556431 14699999973321111210
Q ss_pred CCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCC----CccEEEEEEEEEeeeCCc
Q 040360 92 NNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKG----DKNGIINVSVRSLKVAAD 148 (198)
Q Consensus 92 ~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~G----k~~G~I~lsi~~f~~~~~ 148 (198)
+..++||.++|||. +.........++..|..|-..+. ...-+|||.++ .+++++
T Consensus 114 -~~~klLG~v~vpld-l~~ae~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr-~EpDPR 171 (460)
T PF06219_consen 114 -NSGKLLGKVRVPLD-LKWAEGKPVVFHNGWISIGKNKQGSGKSPSAELHLVVR-AEPDPR 171 (460)
T ss_pred -ccceEEEEEEEEec-cccccCCeeEEEccceecCCCCCCCCCCCcceEEEEEe-ccCCCe
Confidence 12689999999997 43322223356777888876432 23568999999 887744
No 156
>PF14924 DUF4497: Protein of unknown function (DUF4497)
Probab=88.22 E-value=2.3 Score=31.76 Aligned_cols=68 Identities=15% Similarity=0.189 Sum_probs=45.3
Q ss_pred cEEEEEEEeCCCCCCCCCCCCCCceeEEEEEeCccccCCC---------CCCCceEeEEEEeeCCCCCccEEEEEEEEEe
Q 040360 73 RFITVQVQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGY---------APENYLHFLSYRLRNAKGDKNGIINVSVRSL 143 (198)
Q Consensus 73 ~~L~~eV~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~---------~~~~~~~~~sy~L~~~~Gk~~G~I~lsi~~f 143 (198)
..|++.++..-...... ...+||.+.|++.+....- .+........|.|+++.|+..|+|.+.+| +
T Consensus 29 ~pl~i~~~~~~~~~~~~----~~~liG~~~i~l~~~~~~i~~~~~~~~~~p~s~~~k~~f~L~~~~~~~~G~I~l~iR-L 103 (112)
T PF14924_consen 29 FPLYIVVKKVPPGFPTP----PPMLIGSCPISLAEAFNRILKDSAECNGQPSSKTIKGTFPLFDENGNPVGEISLYIR-L 103 (112)
T ss_pred CceEEEEEecCCCCCCC----ccceeeEEEecHHHHHHHHHHHHHhhccCCCchhhcceeEeecCCCceeeeEEEEEE-E
Confidence 46777665432100012 2678999999999876221 11222345689999999999999999999 7
Q ss_pred ee
Q 040360 144 KV 145 (198)
Q Consensus 144 ~~ 145 (198)
..
T Consensus 104 sc 105 (112)
T PF14924_consen 104 SC 105 (112)
T ss_pred ec
Confidence 53
No 157
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=85.00 E-value=15 Score=29.28 Aligned_cols=82 Identities=13% Similarity=0.176 Sum_probs=56.3
Q ss_pred EEEEEEeeCCCCCCCCCcCCcEEEEEECC--C------Cc-EEEeeeecCC----CCCCeeeeEEEEEecCC----CcEE
Q 040360 13 ELTVLSGEDLRIDRRLIKKNAFAIVQTDT--S------FD-YCTTKVDESG----GSHPSWNEKLVIELPMH----ARFI 75 (198)
Q Consensus 13 eVtVlsA~~L~~~~~~~~~dpYvvv~~~~--~------~~-~~~T~v~~~~----g~nP~WNE~f~f~v~~~----~~~L 75 (198)
.-.|.+|++.. ..+-||...+.- + .. ...|.+.... +..-.||.-|.+.+... -..|
T Consensus 5 ~G~I~~a~~f~------~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L 78 (168)
T PF07162_consen 5 IGEIESAEGFE------EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQL 78 (168)
T ss_pred EEEEEEEECCC------CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceE
Confidence 34688999775 346788777653 1 23 4567666432 34567999888877432 2589
Q ss_pred EEEEEeCCCCCCCCCCCCCCceeEEEEEeCcc
Q 040360 76 TVQVQCKSKSSSSGNNNNHNKIVGFARIPVSD 107 (198)
Q Consensus 76 ~~eV~~~~~~~~~g~~~~~d~~IG~a~IpL~~ 107 (198)
.|+|+..|. .| ++.+.|.+.+.|..
T Consensus 79 ~l~V~~~D~---~g----r~~~~GYG~~~lP~ 103 (168)
T PF07162_consen 79 VLQVYSLDS---WG----RDRVEGYGFCHLPT 103 (168)
T ss_pred EEEEEEEcc---cC----CeEEeEEeEEEeCC
Confidence 999999887 77 48898887766643
No 158
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=82.88 E-value=9 Score=37.41 Aligned_cols=117 Identities=14% Similarity=0.176 Sum_probs=77.9
Q ss_pred EEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEEeCCCC-CCCC
Q 040360 11 TIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQCKSKS-SSSG 89 (198)
Q Consensus 11 ~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~~~~~~-~~~g 89 (198)
.+||.|..-++|+.... ..=.||+..+++ .+..|.-.+- ..|.|...-.|.-.+.-..+.+.+|.+... ..+.
T Consensus 342 smevvvmevqglksvap--nrivyctmeveg--eklqtdqaea--skp~wgtqgdfstthplpvvkvklftestgvlale 415 (1218)
T KOG3543|consen 342 SMEVVVMEVQGLKSVAP--NRIVYCTMEVEG--EKLQTDQAEA--SKPKWGTQGDFSTTHPLPVVKVKLFTESTGVLALE 415 (1218)
T ss_pred eeeEEEeeeccccccCC--CeeEEEEEEecc--cccccchhhh--cCCCCCcCCCcccCCCCceeEEEEEeecceeEEee
Confidence 57899999999985432 235799999999 7777765553 699999987776665556777888775432 1234
Q ss_pred CCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCC--ccEEEEEEEEEeeeC
Q 040360 90 NNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGD--KNGIINVSVRSLKVA 146 (198)
Q Consensus 90 ~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk--~~G~I~lsi~~f~~~ 146 (198)
|+-||.+-+--..=... ...||.+.-++.. ..-+|.|.++ +..+
T Consensus 416 -----dkelgrvil~ptpns~k-------s~ewh~mtvpknsqdqdlkiklavr-mdkp 461 (1218)
T KOG3543|consen 416 -----DKELGRVILQPTPNSAK-------SPEWHTMTVPKNSQDQDLKIKLAVR-MDKP 461 (1218)
T ss_pred -----chhhCeEEEecCCCCcC-------CccceeeecCCCCcCccceEEEEEe-ccCC
Confidence 77788876543322111 2247777665433 4567888888 6644
No 159
>PF14186 Aida_C2: Cytoskeletal adhesion; PDB: 2QZQ_A 2QZ5_A.
Probab=80.83 E-value=6.1 Score=31.34 Aligned_cols=93 Identities=10% Similarity=0.082 Sum_probs=52.7
Q ss_pred eEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC-----CcEEEeeeecC-CCCCCeeeeEEEEEecC----CCcEEEEEE
Q 040360 10 RTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS-----FDYCTTKVDES-GGSHPSWNEKLVIELPM----HARFITVQV 79 (198)
Q Consensus 10 ~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~-----~~~~~T~v~~~-~g~nP~WNE~f~f~v~~----~~~~L~~eV 79 (198)
.-|.|.|.+.. |+.. ..-.|||++|++-+. ...+.|.+... .+..=.||....++.+. ....+.||+
T Consensus 13 t~l~v~Iekig-lkda--~~~~~P~~tVSV~D~~G~~ve~~QdTpv~~~~~~~yv~f~~~v~lqtple~lp~Gaai~fE~ 89 (147)
T PF14186_consen 13 TYLSVFIEKIG-LKDA--SQYIDPYFTVSVKDGNGKDVEPPQDTPVGSRREDNYVHFNNTVHLQTPLEKLPKGAAIFFEF 89 (147)
T ss_dssp -EEEEEEEEEE--TTG--GG-EEEEEEEEEE-TTS-BSS--EE--S-SEEETTEEEEEEEEE-SS-GGGS-TT-EEEEEE
T ss_pred ceEEEEEEEEE-ECCh--HHccCCeEEEEEECCCCCCccccccCCCcccccCCEEEEcccEEEcCCHHHCCCceEEEEEE
Confidence 45777777766 7642 234699999998652 34566776532 23556678666665443 246799999
Q ss_pred EeCCCCCCCCCCCCCCceeEEEEEeCccccCC
Q 040360 80 QCKSKSSSSGNNNNHNKIVGFARIPVSDFIGG 111 (198)
Q Consensus 80 ~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~ 111 (198)
+++.. -.+ +-...+++-+++.++..+
T Consensus 90 kH~K~---kk~---k~S~kcw~fme~dei~~g 115 (147)
T PF14186_consen 90 KHYKP---KKK---KTSTKCWAFMELDEIKPG 115 (147)
T ss_dssp EEEET---TTT---CEEEEEEEEEEGGG--SE
T ss_pred Eeeec---cce---eeeeeEEEEEEhhhccCC
Confidence 99764 221 144589999999998766
No 160
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=80.69 E-value=4.9 Score=38.09 Aligned_cols=60 Identities=15% Similarity=0.256 Sum_probs=45.0
Q ss_pred EEeeeecCCCCCCeeeeEEEEEecCC-CcEEEEEEEeCCCC--CCCCCCCCCCceeEEEEEeCccccCC
Q 040360 46 CTTKVDESGGSHPSWNEKLVIELPMH-ARFITVQVQCKSKS--SSSGNNNNHNKIVGFARIPVSDFIGG 111 (198)
Q Consensus 46 ~~T~v~~~~g~nP~WNE~f~f~v~~~-~~~L~~eV~~~~~~--~~~g~~~~~d~~IG~a~IpL~~l~~~ 111 (198)
.+|.++.+. .||.|-++|.+..-.+ .+.|.|++++.+.. .+.. .+++|++.--|+++...
T Consensus 43 ~rte~i~~~-~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~-----~dflg~~~c~l~~ivs~ 105 (529)
T KOG1327|consen 43 GRTEVIRNV-LNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSS-----ADFLGTAECTLSQIVSS 105 (529)
T ss_pred cceeeeecc-CCccceeeechhheeeeeeeEEEEEeecCCccCCcch-----hcccceeeeehhhhhhh
Confidence 477788876 9999999998765443 36899999986642 1223 78999999999888754
No 161
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=69.67 E-value=0.69 Score=44.76 Aligned_cols=56 Identities=21% Similarity=0.186 Sum_probs=40.2
Q ss_pred EEEEEEEEeeCCCC----CCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecC
Q 040360 11 TIELTVLSGEDLRI----DRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPM 70 (198)
Q Consensus 11 ~LeVtVlsA~~L~~----~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~ 70 (198)
..-+++++|+++.. ..+.-+.++++.+.++. +.++|+..... .+|+|||+ .++...
T Consensus 281 i~ll~lI~a~~~~~i~~~~~~~f~~~~~~itsf~~--~~frt~~~~~~-e~piyNe~-~~E~~~ 340 (975)
T KOG2419|consen 281 IALLTLIGAEMKYDIVEDVAKLFKDKWLAITSFGE--QTFRTEISDDT-EKPIYNED-EREDSD 340 (975)
T ss_pred hHHHHHhhhhcccchhhhhhhccCCCchheeecch--hhhhhhhhccc-cccccccc-cccccc
Confidence 33446777777732 12234789999999988 88899987776 89999998 445443
No 162
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=60.96 E-value=3.6 Score=41.30 Aligned_cols=70 Identities=17% Similarity=0.240 Sum_probs=52.3
Q ss_pred CCCcceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECC---CCcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEEe
Q 040360 5 SSSGYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDT---SFDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQC 81 (198)
Q Consensus 5 ~~m~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~---~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~~ 81 (198)
|+.-+|.|.+.+.+|..|+. ...-||+..++. ...+.+|+++.++ ..|.||+.+.+++-. .+.++++.++
T Consensus 754 Spl~ygflh~~vhsat~lkq-----s~~lY~Td~v~e~~~~~s~~st~~iadT-~~~~~npe~hv~~~~-sqS~r~~~~e 826 (1112)
T KOG4269|consen 754 SPLLYGFLHVIVHSATGLKQ-----SRNLYCTDEVDEFGYFVSKASTRVIADT-AEPQWNPEKHVPVIE-SQSSRLEKTE 826 (1112)
T ss_pred Ccccccceeeeecccccccc-----ccceeeehhhhhhccccccccceeeecc-cCCCCChhcccchhh-ccccchhhhc
Confidence 56677999999999999984 346688877764 1357789999987 899999999988754 2344554444
No 163
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=57.12 E-value=94 Score=24.45 Aligned_cols=86 Identities=14% Similarity=0.190 Sum_probs=62.3
Q ss_pred EEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCe-eeeEEEEEecC-------------CCcEEE
Q 040360 11 TIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPS-WNEKLVIELPM-------------HARFIT 76 (198)
Q Consensus 11 ~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~-WNE~f~f~v~~-------------~~~~L~ 76 (198)
.|+|.-+++=|.-. ..+.|.|..|.+-+ +.++|+-..- .-|. +||+|+|+--. +...+.
T Consensus 3 eL~i~aVTCPGv~L---~~~~~vyL~v~~lg--~~~~T~~~pp--vFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~ 75 (140)
T PF14909_consen 3 ELEIHAVTCPGVWL---CDKGDVYLSVCILG--QYKRTRCLPP--VFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVY 75 (140)
T ss_pred EEEEEEEecCCeEe---CCCCCEEEEEEEcc--cEeecccCCC--cCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEE
Confidence 46666666666532 34679999999999 7888876543 2443 89999997421 236888
Q ss_pred EEEEeCCCCCCCCCCCCCCceeEEEEEeCccccCC
Q 040360 77 VQVQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGG 111 (198)
Q Consensus 77 ~eV~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~ 111 (198)
||+..... .. .+.|+...=.+.||+--
T Consensus 76 iELiQl~~---~~-----g~iLA~ye~n~rDfLfP 102 (140)
T PF14909_consen 76 IELIQLVP---PA-----GEILAYYEENTRDFLFP 102 (140)
T ss_pred EEEEEEeC---CC-----CcEEEEEeccccceEcC
Confidence 99987665 44 68999999999998854
No 164
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=52.79 E-value=9.7 Score=37.19 Aligned_cols=52 Identities=13% Similarity=0.066 Sum_probs=37.1
Q ss_pred cCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEEeCCC
Q 040360 30 KKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQCKSK 84 (198)
Q Consensus 30 ~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~~~~~ 84 (198)
..|+|+-|.+.- .+...+.+.+.. .+|.|||+|.+++.. ...+.|.|+.+..
T Consensus 27 al~~y~~v~vk~-~~~~~~~~~~~~-~~~~~~~~F~~~v~~-~~~~~i~v~~~~~ 78 (694)
T KOG0694|consen 27 ALQPYLAVELKV-KQGAENMTKVEL-RIPELRETFHVEVVA-GGAKNIIVLLKSP 78 (694)
T ss_pred hhhhhheeccce-eecccccCCCCC-CCchhhhheeeeeec-CCceEEEEEecCC
Confidence 469999998876 222233344444 899999999999765 4678888887644
No 165
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.
Probab=51.46 E-value=72 Score=22.80 Aligned_cols=59 Identities=22% Similarity=0.353 Sum_probs=33.6
Q ss_pred cEEEEEEEeCCCCCC-CCCCCCCCceeE---EEEEeCcc-ccCCCCCCCceEeEEEEeeCCCCC-ccEEEEEEEE
Q 040360 73 RFITVQVQCKSKSSS-SGNNNNHNKIVG---FARIPVSD-FIGGYAPENYLHFLSYRLRNAKGD-KNGIINVSVR 141 (198)
Q Consensus 73 ~~L~~eV~~~~~~~~-~g~~~~~d~~IG---~a~IpL~~-l~~~~~~~~~~~~~sy~L~~~~Gk-~~G~I~lsi~ 141 (198)
..-.|.|++.+.... .+ ....-+ ...++|.. |..| ...+.|+....+|. ..|.+.|+++
T Consensus 33 ~~s~v~v~~~~g~~v~~~----~~~~~~~~~~~~~~l~~~l~~G------~YtV~wrvvs~DGH~~~G~~~F~V~ 97 (97)
T PF04234_consen 33 GFSSVTVTDPDGKRVDLG----EPTVDGDGKTLTVPLPPPLPPG------TYTVSWRVVSADGHPVSGSFSFTVK 97 (97)
T ss_dssp CC-EEEEEEEEETTSCTC----EEEEEESTTEEEEEESS---SE------EEEEEEEEEETTSCEEEEEEEEEE-
T ss_pred CccEEEEEcCCCceeecC----cceecCCceEEEEECCCCCCCc------eEEEEEEEEecCCCCcCCEEEEEEC
Confidence 456677777543111 12 122233 56777776 5443 25678887778887 6899999874
No 166
>PF10517 DM13: Electron transfer DM13; InterPro: IPR019545 This domain of unknown function is present in proteins of Drosophila melanogaster, Caenorhabditis elegans and Arabidopsis thaliana. In some proteins it is found in either one or two copies, N-terminal to the DOMON domain. Proteins with the DM13 and DOMON domains include Skeletor, which is part of a macromolecular complex that forms the spindle matrix []. The DM13 domain is also a component of a novel electron-transfer system potentially involved in oxidative modification of animal cell-surface proteins []. It contains a nearly absolutely conserved cysteine, which could be involved in a redox reaction, either as a naked thiol group or through binding a prosthetic group like heme [].
Probab=40.96 E-value=1.3e+02 Score=21.84 Aligned_cols=87 Identities=16% Similarity=0.167 Sum_probs=46.5
Q ss_pred CCCCcceEEEEEEEEeeCCCC-C--CCCC-cCCcEEEEEECCC--CcE--EEe-eeecCCCCCCeeeeEEEEEecCC---
Q 040360 4 KSSSGYRTIELTVLSGEDLRI-D--RRLI-KKNAFAIVQTDTS--FDY--CTT-KVDESGGSHPSWNEKLVIELPMH--- 71 (198)
Q Consensus 4 ~~~m~~~~LeVtVlsA~~L~~-~--~~~~-~~dpYvvv~~~~~--~~~--~~T-~v~~~~g~nP~WNE~f~f~v~~~--- 71 (198)
+.+..+++++| +..+-+.. . .... -+|.|+-+.-+.. ... ..+ .-..-+.. ...++.+++.||..
T Consensus 9 ~~h~vsG~v~i--~d~~t~~i~~f~f~~~~gPD~~~~l~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~LP~~~~~ 85 (108)
T PF10517_consen 9 GGHGVSGTVTI--VDGKTFLIFNFNFDGSQGPDLYFWLGKGPSPTPDGFIIPSDEYVSLGPL-KSYNGDQTYTLPAGVDL 85 (108)
T ss_pred CCceeeEEEEE--eCCCeEEEecccccCCCCCCEEEEEECCCCCCCcccccccccceeeecc-cccCCCEEEECCCCCCH
Confidence 34566788877 44443322 1 1221 3788887776621 000 000 00000101 22388899999874
Q ss_pred CcEEEEEEEeCCCCCCCCCCCCCCceeEEEEE
Q 040360 72 ARFITVQVQCKSKSSSSGNNNNHNKIVGFARI 103 (198)
Q Consensus 72 ~~~L~~eV~~~~~~~~~g~~~~~d~~IG~a~I 103 (198)
...=.|.|||+.. ....|.+.|
T Consensus 86 ~d~~~v~IwC~~f----------~~~FG~a~l 107 (108)
T PF10517_consen 86 DDYKWVSIWCEKF----------SVNFGHAPL 107 (108)
T ss_pred HHCCEEEEEehhc----------CceeeEEEe
Confidence 2466789999764 357888776
No 167
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=38.62 E-value=63 Score=32.86 Aligned_cols=70 Identities=16% Similarity=0.293 Sum_probs=42.6
Q ss_pred eEEEEEEEEeeCCCCCCCCCcCCcEEEEEEC---CCCcEEEee--eecCCCCCCeeeeEEEEEecC----CCcEEEEEEE
Q 040360 10 RTIELTVLSGEDLRIDRRLIKKNAFAIVQTD---TSFDYCTTK--VDESGGSHPSWNEKLVIELPM----HARFITVQVQ 80 (198)
Q Consensus 10 ~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~---~~~~~~~T~--v~~~~g~nP~WNE~f~f~v~~----~~~~L~~eV~ 80 (198)
+.+.|+++++..+.. ..+.|-||.|+.+ +...-++|+ ...++-.+|.||+-+.|++-. ....|.|.|+
T Consensus 343 ~~frI~l~~is~~n~---~~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i~ 419 (1076)
T KOG0904|consen 343 RPFRIKLVGISKVNL---PETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLAIY 419 (1076)
T ss_pred CceEEEEeeccccCC---CcccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhheeeee
Confidence 678899999988853 2344566666554 211112222 112224799999998888732 2467888887
Q ss_pred eC
Q 040360 81 CK 82 (198)
Q Consensus 81 ~~ 82 (198)
+-
T Consensus 420 ~v 421 (1076)
T KOG0904|consen 420 AV 421 (1076)
T ss_pred Ee
Confidence 64
No 168
>KOG4027 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.77 E-value=1e+02 Score=24.99 Aligned_cols=43 Identities=19% Similarity=0.268 Sum_probs=30.3
Q ss_pred eeeeEEEEEecCCC----cEEEEEEEeCCCCCCCCCCCCCCceeEEEEEeCccc
Q 040360 59 SWNEKLVIELPMHA----RFITVQVQCKSKSSSSGNNNNHNKIVGFARIPVSDF 108 (198)
Q Consensus 59 ~WNE~f~f~v~~~~----~~L~~eV~~~~~~~~~g~~~~~d~~IG~a~IpL~~l 108 (198)
+||-.|.+-+...+ ..|.+.||.++. +|+ |.+.|.+.|++...
T Consensus 65 v~n~Pievt~KstsPygWPqivl~vfg~d~---~G~----d~v~GYg~~hiP~~ 111 (187)
T KOG4027|consen 65 VINLPIEVTLKSTSPYGWPQIVLNVFGKDH---SGK----DCVTGYGMLHIPTE 111 (187)
T ss_pred EEecceEEEeccCCCCCCceEEEEEecCCc---CCc----ceeeeeeeEecCcC
Confidence 36654444443322 479999999988 884 99999999888754
No 169
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=35.49 E-value=31 Score=31.56 Aligned_cols=40 Identities=15% Similarity=0.174 Sum_probs=27.1
Q ss_pred eeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCC--ccEEEEEEEE
Q 040360 97 IVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGD--KNGIINVSVR 141 (198)
Q Consensus 97 ~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk--~~G~I~lsi~ 141 (198)
+||++.||+..+.+.. .....||++.+...+ ..|.| |.++
T Consensus 1 ~~G~v~i~~~~~~~~~----~~~e~w~~i~~~~~~~~~~~~l-lk~~ 42 (395)
T cd05137 1 LVGRIDITLEMILDRG----LDKETWLPIFDVDNKSVGEGLI-IKVS 42 (395)
T ss_pred CeeEEEeehhhhccCC----CCceeeeccccCCCCCcCcceE-EEEE
Confidence 4899999999955442 123479999986544 34556 4555
No 170
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=35.19 E-value=3.4e+02 Score=24.44 Aligned_cols=104 Identities=15% Similarity=0.144 Sum_probs=60.9
Q ss_pred eEEEEEEEEeeCCCCC------CCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCe--eeeEEEEEecCC----------
Q 040360 10 RTIELTVLSGEDLRID------RRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPS--WNEKLVIELPMH---------- 71 (198)
Q Consensus 10 ~~LeVtVlsA~~L~~~------~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~--WNE~f~f~v~~~---------- 71 (198)
=.|.|++..|++|..- ...+...-|...++-+ ....|.--.+. .+|. -++...|.+...
T Consensus 192 FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllG--n~Vt~~~F~~l-~~~~f~~er~s~vRirSS~~~L~~yf~~ 268 (340)
T PF12416_consen 192 FVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLG--NDVTTEPFKSL-SSPSFPPERASGVRIRSSLRVLRRYFQQ 268 (340)
T ss_pred EEEEEehhhhhhHHhhccccccccCCCccEEEEEEecC--cEeEeeecccc-CCCCcCeeeeeEEeecccHHHHHHHHhh
Confidence 3588899999999532 1112246678888888 34444433332 4553 455444555321
Q ss_pred CcEEEEEEEeCCCCCCCCCCCCCCceeEEEEEeCccccCCCC---CC-CceEeEEEEeeCC
Q 040360 72 ARFITVQVQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYA---PE-NYLHFLSYRLRNA 128 (198)
Q Consensus 72 ~~~L~~eV~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~---~~-~~~~~~sy~L~~~ 128 (198)
...|.|-++| | ++.||.+.||+..|+.... .+ .......|.|...
T Consensus 269 ~~~L~I~Lc~-------g-----~~~Lg~~~v~l~~Ll~~~~~~~~~~~~~~eg~F~l~~~ 317 (340)
T PF12416_consen 269 IPKLQIHLCC-------G-----NQSLGSTSVPLQPLLPKDSLEFNNSPVIIEGAFPLNPP 317 (340)
T ss_pred CCCeEEEEee-------C-----CcEEEEEEEEhhhccCCCcccccCCceeecceEeecCC
Confidence 2356666654 4 6789999999999975421 11 1234456776653
No 171
>PF06196 DUF997: Protein of unknown function (DUF997); InterPro: IPR010398 This is a family of predicted bacterial membrane protein with unknown function.
Probab=33.80 E-value=7.1 Score=27.72 Aligned_cols=21 Identities=24% Similarity=0.659 Sum_probs=15.0
Q ss_pred CcceeccccCCce-----EEeeceee
Q 040360 174 GFASGFGAPVGGV-----VTGVPVWC 194 (198)
Q Consensus 174 ~~~~~~g~~~~~~-----v~g~p~~~ 194 (198)
|+..++|...++. +.|+|.|+
T Consensus 21 W~~~ay~~~~~~~~~y~~i~GlPlWF 46 (80)
T PF06196_consen 21 WYGFAYGLGNGDGEEYKYIFGLPLWF 46 (80)
T ss_pred HHHHHHcCCCCCccccccccCCcHHH
Confidence 4445566666666 99999995
No 172
>PF08151 FerI: FerI (NUC094) domain; InterPro: IPR012968 The ferlin gene family are characterised by multiple tandem C2 domains and a C-terminal transmembrane domain. They are found in a wide range of species and their function remains unknown, however, mutations in its two most well-characterised members, dysferlin and otoferlin, have been implicated in human disease []. This domain is present in proteins of the Ferlin family, which includes Otoferlin, Myoferlin and Dysferlin. It is often located between two C2 domains [].
Probab=32.16 E-value=1.7e+02 Score=20.30 Aligned_cols=36 Identities=14% Similarity=0.201 Sum_probs=27.3
Q ss_pred CCCceEeEEEEeeCCCC---CccEEEEEEEEEeeeCCccC
Q 040360 114 PENYLHFLSYRLRNAKG---DKNGIINVSVRSLKVAADQH 150 (198)
Q Consensus 114 ~~~~~~~~sy~L~~~~G---k~~G~I~lsi~~f~~~~~~~ 150 (198)
|++.+...|..|.++.. ..+|.|.++|. +....+.+
T Consensus 10 P~H~~~~KW~~L~dP~D~~~G~kGYlKv~i~-Vlg~GD~~ 48 (72)
T PF08151_consen 10 PDHQFYRKWALLTDPDDTSAGVKGYLKVDIS-VLGPGDEP 48 (72)
T ss_pred CCCeeEeceEEecCCCCCccCCceEEEEEEE-EEcCCCcC
Confidence 45566677999999753 47999999999 88776653
No 173
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=32.10 E-value=57 Score=34.33 Aligned_cols=99 Identities=15% Similarity=0.190 Sum_probs=65.1
Q ss_pred eEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC-----CcEEEeeeecCCCCCCe--eeeEEEEEec----CCCcEEEEE
Q 040360 10 RTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS-----FDYCTTKVDESGGSHPS--WNEKLVIELP----MHARFITVQ 78 (198)
Q Consensus 10 ~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~-----~~~~~T~v~~~~g~nP~--WNE~f~f~v~----~~~~~L~~e 78 (198)
.-|.+||-.|..+..++...-.|=|..+++... ..-+.-+++.+++.-|. |++-+.|++- +.+..|++.
T Consensus 635 ~~L~ftv~a~H~ip~~W~s~yedfyl~~~l~hg~k~l~~p~~t~k~~~~~~~F~ri~~d~~i~Fp~~i~~lPREt~L~~t 714 (1639)
T KOG0905|consen 635 DFLQFTVYAAHRIPENWVSQYEDFYLSCSLSHGTKDLDKPNQTPKTITSKHFFPRIPWDLYIKFPRQICQLPRETRLTVT 714 (1639)
T ss_pred cceeeeeecccCCChHhhhhhhhheEEEeeecCceeccccccccccccccccccccchhhhhcchHHHhhCChhheEEEE
Confidence 469999999999987776666788887777642 11222245555566676 9998888763 125688998
Q ss_pred EEeCCCCCCCCC------CCCCCceeEEEEEeCcccc
Q 040360 79 VQCKSKSSSSGN------NNNHNKIVGFARIPVSDFI 109 (198)
Q Consensus 79 V~~~~~~~~~g~------~~~~d~~IG~a~IpL~~l~ 109 (198)
+|..-.. ..|. .++....||++.+||-++.
T Consensus 715 L~G~~~~-s~gan~d~n~err~~~~LGw~slpLfdf~ 750 (1639)
T KOG0905|consen 715 LFGIVRA-SAGANADQNKERRVPEALGWCSLPLFDFR 750 (1639)
T ss_pred EeeeecC-CCCCCchhcccccchhhhheeeccccchh
Confidence 8864321 0221 1112367999999998764
No 174
>smart00686 DM13 Domain present in fly proteins (CG14681, CG12492, CG6217), worm H06A10.1 and Arabidopsis thaliana MBG8.9.
Probab=31.10 E-value=2.2e+02 Score=21.15 Aligned_cols=82 Identities=23% Similarity=0.294 Sum_probs=43.6
Q ss_pred EEEEEeeCCCCCC---CCCcCCcEEEEEECCC-CcEEEeee-ecCCC--CCCee-eeEEEEEecCCC---cEEEEEEEeC
Q 040360 14 LTVLSGEDLRIDR---RLIKKNAFAIVQTDTS-FDYCTTKV-DESGG--SHPSW-NEKLVIELPMHA---RFITVQVQCK 82 (198)
Q Consensus 14 VtVlsA~~L~~~~---~~~~~dpYvvv~~~~~-~~~~~T~v-~~~~g--~nP~W-NE~f~f~v~~~~---~~L~~eV~~~ 82 (198)
|.|+.++-|...+ ....+|.|--+-.+++ ....-..+ ++.+. ..... ||++.+.|+... ..=.|.|||.
T Consensus 11 V~i~d~~Tl~I~~FsydG~~pD~yF~~g~~~~p~~~~G~~v~de~g~~~~l~~y~~e~ivl~LP~~~ti~di~w~SV~~~ 90 (108)
T smart00686 11 VEIVDAKTLRIPNFSYDGSGPDAYFWVGAGSRPDNEGGKKVPDEYGYCNPLRRYHNEDIVLRLPESLTIDDIKWFSVWCL 90 (108)
T ss_pred EEEEeCCEEEEcceeccCCCCcEEEEeccCCCCCCcCCeEcCCccCCcccccceeCCEEEEECCCCCeEecCCEEEEEcc
Confidence 5666777665432 2224677765555542 11101112 22210 11223 899999998753 2336888987
Q ss_pred CCCCCCCCCCCCCceeEEEEEeC
Q 040360 83 SKSSSSGNNNNHNKIVGFARIPV 105 (198)
Q Consensus 83 ~~~~~~g~~~~~d~~IG~a~IpL 105 (198)
.. ....|.+.||-
T Consensus 91 ~~----------~~nFG~V~ip~ 103 (108)
T smart00686 91 KT----------AHNFGHVLFPE 103 (108)
T ss_pred cc----------CCcceeEEccC
Confidence 64 23567777763
No 175
>PF12682 Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A.
Probab=29.24 E-value=27 Score=27.50 Aligned_cols=11 Identities=36% Similarity=1.020 Sum_probs=9.5
Q ss_pred eEEeeceeeee
Q 040360 186 VVTGVPVWCAN 196 (198)
Q Consensus 186 ~v~g~p~~~~~ 196 (198)
+++|.|||+..
T Consensus 77 I~lG~PvW~~~ 87 (156)
T PF12682_consen 77 IFLGTPVWWGT 87 (156)
T ss_dssp EEEEEEEETTE
T ss_pred EEEechHHcCC
Confidence 89999999754
No 176
>PRK06934 flavodoxin; Provisional
Probab=23.95 E-value=36 Score=28.71 Aligned_cols=13 Identities=23% Similarity=0.761 Sum_probs=10.9
Q ss_pred CceEEeeceeeee
Q 040360 184 GGVVTGVPVWCAN 196 (198)
Q Consensus 184 ~~~v~g~p~~~~~ 196 (198)
.-+++|+|+||..
T Consensus 131 D~I~IG~PIWwg~ 143 (221)
T PRK06934 131 DQIFIGYPIWWYK 143 (221)
T ss_pred CEEEEEcchhhcc
Confidence 5599999999864
No 177
>PF14472 DUF4429: Domain of unknown function (DUF4429)
Probab=22.82 E-value=99 Score=22.16 Aligned_cols=35 Identities=26% Similarity=0.462 Sum_probs=25.0
Q ss_pred CceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCccEEEEEEEE
Q 040360 95 NKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDKNGIINVSVR 141 (198)
Q Consensus 95 d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~~G~I~lsi~ 141 (198)
..-.|+-.|||++|.. .+++.+.+...|.|+|.++
T Consensus 21 ~~~~G~~~ipl~~i~g------------V~~~~pg~~~~G~Lrf~~~ 55 (94)
T PF14472_consen 21 KRALGEKTIPLSAISG------------VEWKPPGGLTNGYLRFVLR 55 (94)
T ss_pred hccCCCEEEEHHHcce------------EEEEcCCceeEEEEEEEEC
Confidence 4568999999999952 2344444456898888877
Done!