BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040361
(413 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/259 (18%), Positives = 115/259 (44%), Gaps = 37/259 (14%)
Query: 146 NFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEV 205
N L++ + + + ++ ++ G+ +++++ H + V C +++ +GS+D +V +W+V
Sbjct: 100 NLLVSASD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 158
Query: 206 IRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTC 265
+ L H D ++ ++ + + +++S S DG C
Sbjct: 159 KTGKC-----------------------LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 195
Query: 266 VFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSIN-GKHLAS-SES 323
G+ +++L +S + S +G+ +L D +L L+ + GK L + +
Sbjct: 196 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 255
Query: 324 NGRLNCLELS---ACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECF 380
C+ + G+++V G + + + ++ + E+V++ G ++ S A P E
Sbjct: 256 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 315
Query: 381 LAGTKDGCLLVYSIENRRT 399
+A ++EN +T
Sbjct: 316 IASA--------ALENDKT 326
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/196 (20%), Positives = 79/196 (40%), Gaps = 35/196 (17%)
Query: 143 PSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMV 202
P N LI G+++ S ++ + G+ ++++ H D VS V DGS++ + SYD +
Sbjct: 139 PQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 197
Query: 203 WEVIRARAPEKRVRNMQIE------APRKDYVIVETPFHIL--------------CGHDD 242
W+ + + + + +P Y++ T + L GH +
Sbjct: 198 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 257
Query: 243 IITCLYVSVEL---DIVISGSKDGTCVFHTLREGRYVRSL-----------CHPSGSALS 288
C++ + + ++SGS+D L+ V+ L CHP+ + ++
Sbjct: 258 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIA 317
Query: 289 KLAASRHGRIVLYGDD 304
A I L+ D
Sbjct: 318 SAALENDKTIKLWKSD 333
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/259 (18%), Positives = 115/259 (44%), Gaps = 37/259 (14%)
Query: 146 NFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEV 205
N L++ + + + ++ ++ G+ +++++ H + V C +++ +GS+D +V +W+V
Sbjct: 102 NLLVSASD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 160
Query: 206 IRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTC 265
+ L H D ++ ++ + + +++S S DG C
Sbjct: 161 KTGKC-----------------------LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 197
Query: 266 VFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSIN-GKHLAS-SES 323
G+ +++L +S + S +G+ +L D +L L+ + GK L + +
Sbjct: 198 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 257
Query: 324 NGRLNCLELS---ACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECF 380
C+ + G+++V G + + + ++ + E+V++ G ++ S A P E
Sbjct: 258 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 317
Query: 381 LAGTKDGCLLVYSIENRRT 399
+A ++EN +T
Sbjct: 318 IASA--------ALENDKT 328
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/196 (20%), Positives = 79/196 (40%), Gaps = 35/196 (17%)
Query: 143 PSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMV 202
P N LI G+++ S ++ + G+ ++++ H D VS V DGS++ + SYD +
Sbjct: 141 PQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 199
Query: 203 WEVIRARAPEKRVRNMQIE------APRKDYVIVETPFHIL--------------CGHDD 242
W+ + + + + +P Y++ T + L GH +
Sbjct: 200 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 259
Query: 243 IITCLYVSVEL---DIVISGSKDGTCVFHTLREGRYVRSL-----------CHPSGSALS 288
C++ + + ++SGS+D L+ V+ L CHP+ + ++
Sbjct: 260 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIA 319
Query: 289 KLAASRHGRIVLYGDD 304
A I L+ D
Sbjct: 320 SAALENDKTIKLWKSD 335
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/259 (18%), Positives = 115/259 (44%), Gaps = 37/259 (14%)
Query: 146 NFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEV 205
N L++ + + + ++ ++ G+ +++++ H + V C +++ +GS+D +V +W+V
Sbjct: 84 NLLVSASD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
Query: 206 IRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTC 265
+ L H D ++ ++ + + +++S S DG C
Sbjct: 143 KTGKC-----------------------LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 179
Query: 266 VFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSIN-GKHLAS-SES 323
G+ +++L +S + S +G+ +L D +L L+ + GK L + +
Sbjct: 180 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 239
Query: 324 NGRLNCLELS---ACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECF 380
C+ + G+++V G + + + ++ + E+V++ G ++ S A P E
Sbjct: 240 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 299
Query: 381 LAGTKDGCLLVYSIENRRT 399
+A ++EN +T
Sbjct: 300 IASA--------ALENDKT 310
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/196 (20%), Positives = 79/196 (40%), Gaps = 35/196 (17%)
Query: 143 PSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMV 202
P N LI G+++ S ++ + G+ ++++ H D VS V DGS++ + SYD +
Sbjct: 123 PQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 181
Query: 203 WEVIRARAPEKRVRNMQIE------APRKDYVIVETPFHIL--------------CGHDD 242
W+ + + + + +P Y++ T + L GH +
Sbjct: 182 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 241
Query: 243 IITCLYVSVEL---DIVISGSKDGTCVFHTLREGRYVRSL-----------CHPSGSALS 288
C++ + + ++SGS+D L+ V+ L CHP+ + ++
Sbjct: 242 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIA 301
Query: 289 KLAASRHGRIVLYGDD 304
A I L+ D
Sbjct: 302 SAALENDKTIKLWKSD 317
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 51/260 (19%), Positives = 120/260 (46%), Gaps = 39/260 (15%)
Query: 146 NFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEV 205
N L++ + + + ++ ++ G+ +++++ H + V C +++ +GS+D +V +W+V
Sbjct: 81 NLLVSASD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 206 IRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTC 265
K + ++T L H D ++ ++ + + +++S S DG C
Sbjct: 140 -------------------KTGMCLKT----LPAHSDPVSAVHFNRDGSLIVSSSYDGLC 176
Query: 266 VFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYG--DDDLSLHLFSINGKHLAS-SE 322
G+ +++L +S + S +G+ +L D+DL L +S GK L + +
Sbjct: 177 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYS-KGKCLKTYTG 235
Query: 323 SNGRLNCLELS---ACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEEC 379
C+ + G+++V G + + + ++ + E+V++ G ++ S A P E
Sbjct: 236 HKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 295
Query: 380 FLAGTKDGCLLVYSIENRRT 399
+A ++EN +T
Sbjct: 296 IIASA--------ALENDKT 307
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/196 (20%), Positives = 78/196 (39%), Gaps = 35/196 (17%)
Query: 143 PSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMV 202
P N LI G+++ S ++ + G ++++ H D VS V DGS++ + SYD +
Sbjct: 120 PQSN-LIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178
Query: 203 WEVIRARAPEKRVRNMQIE------APRKDYVIVETPFHIL--------------CGHDD 242
W+ + + + + +P Y++ T + L GH +
Sbjct: 179 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKN 238
Query: 243 IITCLYVSVEL---DIVISGSKDGTCVFHTLREGRYVRSL-----------CHPSGSALS 288
C++ + + ++SGS+D L+ V+ L CHP+ + ++
Sbjct: 239 EKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIA 298
Query: 289 KLAASRHGRIVLYGDD 304
A I L+ D
Sbjct: 299 SAALENDKTIKLWKSD 314
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 47/259 (18%), Positives = 115/259 (44%), Gaps = 37/259 (14%)
Query: 146 NFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEV 205
N L++ + + + ++ ++ G+ +++++ H + V C +++ +GS+D +V +W+V
Sbjct: 84 NLLVSASD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
Query: 206 IRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTC 265
+ L H D ++ ++ + + +++S S DG C
Sbjct: 143 KTGKC-----------------------LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 179
Query: 266 VFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSIN-GKHLAS-SES 323
G+ +++L +S + S +G+ +L D +L L+ + GK L + +
Sbjct: 180 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 239
Query: 324 NGRLNCLELS---ACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECF 380
C+ + G+++V G + + + ++ + E+V++ G ++ S A P E
Sbjct: 240 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 299
Query: 381 LAGTKDGCLLVYSIENRRT 399
+A ++EN +T
Sbjct: 300 IASA--------ALENDKT 310
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/196 (20%), Positives = 79/196 (40%), Gaps = 35/196 (17%)
Query: 143 PSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMV 202
P N LI G+++ S ++ + G+ ++++ H D VS V DGS++ + SYD +
Sbjct: 123 PQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 181
Query: 203 WEVIRARAPEKRVRNMQIE------APRKDYVIVETPFHIL--------------CGHDD 242
W+ + + + + +P Y++ T + L GH +
Sbjct: 182 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 241
Query: 243 IITCLYVSVEL---DIVISGSKDGTCVFHTLREGRYVRSL-----------CHPSGSALS 288
C++ + + ++SGS+D L+ V+ L CHP+ + ++
Sbjct: 242 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIA 301
Query: 289 KLAASRHGRIVLYGDD 304
A I L+ D
Sbjct: 302 SAALENDKTIKLWKSD 317
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/259 (18%), Positives = 115/259 (44%), Gaps = 37/259 (14%)
Query: 146 NFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEV 205
N L++ + + + ++ ++ G+ +++++ H + V C +++ +GS+D +V +W+V
Sbjct: 95 NLLVSASD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 153
Query: 206 IRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTC 265
+ L H D ++ ++ + + +++S S DG C
Sbjct: 154 KTGKC-----------------------LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 190
Query: 266 VFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSIN-GKHLAS-SES 323
G+ +++L +S + S +G+ +L D +L L+ + GK L + +
Sbjct: 191 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 250
Query: 324 NGRLNCLELS---ACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECF 380
C+ + G+++V G + + + ++ + E+V++ G ++ S A P E
Sbjct: 251 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 310
Query: 381 LAGTKDGCLLVYSIENRRT 399
+A ++EN +T
Sbjct: 311 IASA--------ALENDKT 321
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/196 (20%), Positives = 79/196 (40%), Gaps = 35/196 (17%)
Query: 143 PSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMV 202
P N LI G+++ S ++ + G+ ++++ H D VS V DGS++ + SYD +
Sbjct: 134 PQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 192
Query: 203 WEVIRARAPEKRVRNMQIE------APRKDYVIVETPFHIL--------------CGHDD 242
W+ + + + + +P Y++ T + L GH +
Sbjct: 193 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 252
Query: 243 IITCLYVSVEL---DIVISGSKDGTCVFHTLREGRYVRSL-----------CHPSGSALS 288
C++ + + ++SGS+D L+ V+ L CHP+ + ++
Sbjct: 253 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIA 312
Query: 289 KLAASRHGRIVLYGDD 304
A I L+ D
Sbjct: 313 SAALENDKTIKLWKSD 328
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/259 (18%), Positives = 115/259 (44%), Gaps = 37/259 (14%)
Query: 146 NFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEV 205
N L++ + + + ++ ++ G+ +++++ H + V C +++ +GS+D +V +W+V
Sbjct: 78 NLLVSASD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 136
Query: 206 IRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTC 265
+ L H D ++ ++ + + +++S S DG C
Sbjct: 137 KTGKC-----------------------LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 173
Query: 266 VFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSIN-GKHLAS-SES 323
G+ +++L +S + S +G+ +L D +L L+ + GK L + +
Sbjct: 174 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 233
Query: 324 NGRLNCLELS---ACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECF 380
C+ + G+++V G + + + ++ + E+V++ G ++ S A P E
Sbjct: 234 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 293
Query: 381 LAGTKDGCLLVYSIENRRT 399
+A ++EN +T
Sbjct: 294 IASA--------ALENDKT 304
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/196 (20%), Positives = 79/196 (40%), Gaps = 35/196 (17%)
Query: 143 PSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMV 202
P N LI G+++ S ++ + G+ ++++ H D VS V DGS++ + SYD +
Sbjct: 117 PQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 175
Query: 203 WEVIRARAPEKRVRNMQIE------APRKDYVIVETPFHIL--------------CGHDD 242
W+ + + + + +P Y++ T + L GH +
Sbjct: 176 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 235
Query: 243 IITCLYVSVEL---DIVISGSKDGTCVFHTLREGRYVRSL-----------CHPSGSALS 288
C++ + + ++SGS+D L+ V+ L CHP+ + ++
Sbjct: 236 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIA 295
Query: 289 KLAASRHGRIVLYGDD 304
A I L+ D
Sbjct: 296 SAALENDKTIKLWKSD 311
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/259 (18%), Positives = 115/259 (44%), Gaps = 37/259 (14%)
Query: 146 NFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEV 205
N L++ + + + ++ ++ G+ +++++ H + V C +++ +GS+D +V +W+V
Sbjct: 79 NLLVSASD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 137
Query: 206 IRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTC 265
+ L H D ++ ++ + + +++S S DG C
Sbjct: 138 KTGKC-----------------------LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 174
Query: 266 VFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSIN-GKHLAS-SES 323
G+ +++L +S + S +G+ +L D +L L+ + GK L + +
Sbjct: 175 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 234
Query: 324 NGRLNCLELS---ACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECF 380
C+ + G+++V G + + + ++ + E+V++ G ++ S A P E
Sbjct: 235 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 294
Query: 381 LAGTKDGCLLVYSIENRRT 399
+A ++EN +T
Sbjct: 295 IASA--------ALENDKT 305
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/196 (20%), Positives = 79/196 (40%), Gaps = 35/196 (17%)
Query: 143 PSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMV 202
P N LI G+++ S ++ + G+ ++++ H D VS V DGS++ + SYD +
Sbjct: 118 PQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 176
Query: 203 WEVIRARAPEKRVRNMQIE------APRKDYVIVETPFHIL--------------CGHDD 242
W+ + + + + +P Y++ T + L GH +
Sbjct: 177 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 236
Query: 243 IITCLYVSVEL---DIVISGSKDGTCVFHTLREGRYVRSL-----------CHPSGSALS 288
C++ + + ++SGS+D L+ V+ L CHP+ + ++
Sbjct: 237 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIA 296
Query: 289 KLAASRHGRIVLYGDD 304
A I L+ D
Sbjct: 297 SAALENDKTIKLWKSD 312
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/259 (18%), Positives = 115/259 (44%), Gaps = 37/259 (14%)
Query: 146 NFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEV 205
N L++ + + + ++ ++ G+ +++++ H + V C +++ +GS+D +V +W+V
Sbjct: 77 NLLVSASD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 135
Query: 206 IRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTC 265
+ L H D ++ ++ + + +++S S DG C
Sbjct: 136 KTGKC-----------------------LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 172
Query: 266 VFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSIN-GKHLAS-SES 323
G+ +++L +S + S +G+ +L D +L L+ + GK L + +
Sbjct: 173 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 232
Query: 324 NGRLNCLELS---ACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECF 380
C+ + G+++V G + + + ++ + E+V++ G ++ S A P E
Sbjct: 233 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 292
Query: 381 LAGTKDGCLLVYSIENRRT 399
+A ++EN +T
Sbjct: 293 IASA--------ALENDKT 303
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/196 (20%), Positives = 79/196 (40%), Gaps = 35/196 (17%)
Query: 143 PSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMV 202
P N LI G+++ S ++ + G+ ++++ H D VS V DGS++ + SYD +
Sbjct: 116 PQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 174
Query: 203 WEVIRARAPEKRVRNMQIE------APRKDYVIVETPFHIL--------------CGHDD 242
W+ + + + + +P Y++ T + L GH +
Sbjct: 175 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 234
Query: 243 IITCLYVSVEL---DIVISGSKDGTCVFHTLREGRYVRSL-----------CHPSGSALS 288
C++ + + ++SGS+D L+ V+ L CHP+ + ++
Sbjct: 235 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIA 294
Query: 289 KLAASRHGRIVLYGDD 304
A I L+ D
Sbjct: 295 SAALENDKTIKLWKSD 310
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/259 (18%), Positives = 115/259 (44%), Gaps = 37/259 (14%)
Query: 146 NFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEV 205
N L++ + + + ++ ++ G+ +++++ H + V C +++ +GS+D +V +W+V
Sbjct: 74 NLLVSASD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 132
Query: 206 IRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTC 265
+ L H D ++ ++ + + +++S S DG C
Sbjct: 133 KTGKC-----------------------LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 169
Query: 266 VFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSIN-GKHLAS-SES 323
G+ +++L +S + S +G+ +L D +L L+ + GK L + +
Sbjct: 170 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 229
Query: 324 NGRLNCLELS---ACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECF 380
C+ + G+++V G + + + ++ + E+V++ G ++ S A P E
Sbjct: 230 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 289
Query: 381 LAGTKDGCLLVYSIENRRT 399
+A ++EN +T
Sbjct: 290 IASA--------ALENDKT 300
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/196 (20%), Positives = 79/196 (40%), Gaps = 35/196 (17%)
Query: 143 PSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMV 202
P N LI G+++ S ++ + G+ ++++ H D VS V DGS++ + SYD +
Sbjct: 113 PQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 171
Query: 203 WEVIRARAPEKRVRNMQIE------APRKDYVIVETPFHIL--------------CGHDD 242
W+ + + + + +P Y++ T + L GH +
Sbjct: 172 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 231
Query: 243 IITCLYVSVEL---DIVISGSKDGTCVFHTLREGRYVRSL-----------CHPSGSALS 288
C++ + + ++SGS+D L+ V+ L CHP+ + ++
Sbjct: 232 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIA 291
Query: 289 KLAASRHGRIVLYGDD 304
A I L+ D
Sbjct: 292 SAALENDKTIKLWKSD 307
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/259 (18%), Positives = 115/259 (44%), Gaps = 37/259 (14%)
Query: 146 NFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEV 205
N L++ + + + ++ ++ G+ +++++ H + V C +++ +GS+D +V +W+V
Sbjct: 78 NLLVSASD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 136
Query: 206 IRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTC 265
+ L H D ++ ++ + + +++S S DG C
Sbjct: 137 KTGKC-----------------------LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 173
Query: 266 VFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSIN-GKHLAS-SES 323
G+ +++L +S + S +G+ +L D +L L+ + GK L + +
Sbjct: 174 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 233
Query: 324 NGRLNCLELS---ACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECF 380
C+ + G+++V G + + + ++ + E+V++ G ++ S A P E
Sbjct: 234 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 293
Query: 381 LAGTKDGCLLVYSIENRRT 399
+A ++EN +T
Sbjct: 294 IASA--------ALENDKT 304
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/196 (20%), Positives = 79/196 (40%), Gaps = 35/196 (17%)
Query: 143 PSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMV 202
P N LI G+++ S ++ + G+ ++++ H D VS V DGS++ + SYD +
Sbjct: 117 PQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 175
Query: 203 WEVIRARAPEKRVRNMQIE------APRKDYVIVETPFHIL--------------CGHDD 242
W+ + + + + +P Y++ T + L GH +
Sbjct: 176 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 235
Query: 243 IITCLYVSVEL---DIVISGSKDGTCVFHTLREGRYVRSL-----------CHPSGSALS 288
C++ + + ++SGS+D L+ V+ L CHP+ + ++
Sbjct: 236 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIA 295
Query: 289 KLAASRHGRIVLYGDD 304
A I L+ D
Sbjct: 296 SAALENDKTIKLWKSD 311
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/259 (18%), Positives = 115/259 (44%), Gaps = 37/259 (14%)
Query: 146 NFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEV 205
N L++ + + + ++ ++ G+ +++++ H + V C +++ +GS+D +V +W+V
Sbjct: 83 NLLVSASD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 141
Query: 206 IRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTC 265
+ L H D ++ ++ + + +++S S DG C
Sbjct: 142 KTGKC-----------------------LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 178
Query: 266 VFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSIN-GKHLAS-SES 323
G+ +++L +S + S +G+ +L D +L L+ + GK L + +
Sbjct: 179 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 238
Query: 324 NGRLNCLELS---ACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECF 380
C+ + G+++V G + + + ++ + E+V++ G ++ S A P E
Sbjct: 239 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 298
Query: 381 LAGTKDGCLLVYSIENRRT 399
+A ++EN +T
Sbjct: 299 IASA--------ALENDKT 309
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/196 (20%), Positives = 79/196 (40%), Gaps = 35/196 (17%)
Query: 143 PSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMV 202
P N LI G+++ S ++ + G+ ++++ H D VS V DGS++ + SYD +
Sbjct: 122 PQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 180
Query: 203 WEVIRARAPEKRVRNMQIE------APRKDYVIVETPFHIL--------------CGHDD 242
W+ + + + + +P Y++ T + L GH +
Sbjct: 181 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 240
Query: 243 IITCLYVSVEL---DIVISGSKDGTCVFHTLREGRYVRSL-----------CHPSGSALS 288
C++ + + ++SGS+D L+ V+ L CHP+ + ++
Sbjct: 241 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIA 300
Query: 289 KLAASRHGRIVLYGDD 304
A I L+ D
Sbjct: 301 SAALENDKTIKLWKSD 316
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/259 (18%), Positives = 115/259 (44%), Gaps = 37/259 (14%)
Query: 146 NFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEV 205
N L++ + + + ++ ++ G+ +++++ H + V C +++ +GS+D +V +W+V
Sbjct: 84 NLLVSASD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
Query: 206 IRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTC 265
+ L H D ++ ++ + + +++S S DG C
Sbjct: 143 KTGKC-----------------------LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 179
Query: 266 VFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSIN-GKHLAS-SES 323
G+ +++L +S + S +G+ +L D +L L+ + GK L + +
Sbjct: 180 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 239
Query: 324 NGRLNCLELS---ACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECF 380
C+ + G+++V G + + + ++ + E+V++ G ++ S A P E
Sbjct: 240 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 299
Query: 381 LAGTKDGCLLVYSIENRRT 399
+A ++EN +T
Sbjct: 300 IASA--------ALENDKT 310
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/196 (20%), Positives = 79/196 (40%), Gaps = 35/196 (17%)
Query: 143 PSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMV 202
P N LI G+++ S ++ + G+ ++++ H D VS V DGS++ + SYD +
Sbjct: 123 PQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 181
Query: 203 WEVIRARAPEKRVRNMQIE------APRKDYVIVETPFHIL--------------CGHDD 242
W+ + + + + +P Y++ T + L GH +
Sbjct: 182 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 241
Query: 243 IITCLYVSVEL---DIVISGSKDGTCVFHTLREGRYVRSL-----------CHPSGSALS 288
C++ + + ++SGS+D L+ V+ L CHP+ + ++
Sbjct: 242 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIA 301
Query: 289 KLAASRHGRIVLYGDD 304
A I L+ D
Sbjct: 302 SAALENDKTIKLWKSD 317
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/259 (18%), Positives = 115/259 (44%), Gaps = 37/259 (14%)
Query: 146 NFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEV 205
N L++ + + + ++ ++ G+ +++++ H + V C +++ +GS+D +V +W+V
Sbjct: 81 NLLVSASD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 206 IRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTC 265
+ L H D ++ ++ + + +++S S DG C
Sbjct: 140 KTGKC-----------------------LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 176
Query: 266 VFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSIN-GKHLAS-SES 323
G+ +++L +S + S +G+ +L D +L L+ + GK L + +
Sbjct: 177 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 236
Query: 324 NGRLNCLELS---ACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECF 380
C+ + G+++V G + + + ++ + E+V++ G ++ S A P E
Sbjct: 237 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 296
Query: 381 LAGTKDGCLLVYSIENRRT 399
+A ++EN +T
Sbjct: 297 IASA--------ALENDKT 307
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/196 (20%), Positives = 79/196 (40%), Gaps = 35/196 (17%)
Query: 143 PSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMV 202
P N LI G+++ S ++ + G+ ++++ H D VS V DGS++ + SYD +
Sbjct: 120 PQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178
Query: 203 WEVIRARAPEKRVRNMQIE------APRKDYVIVETPFHIL--------------CGHDD 242
W+ + + + + +P Y++ T + L GH +
Sbjct: 179 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 238
Query: 243 IITCLYVSVEL---DIVISGSKDGTCVFHTLREGRYVRSL-----------CHPSGSALS 288
C++ + + ++SGS+D L+ V+ L CHP+ + ++
Sbjct: 239 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIA 298
Query: 289 KLAASRHGRIVLYGDD 304
A I L+ D
Sbjct: 299 SAALENDKTIKLWKSD 314
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/259 (18%), Positives = 115/259 (44%), Gaps = 37/259 (14%)
Query: 146 NFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEV 205
N L++ + + + ++ ++ G+ +++++ H + V C +++ +GS+D +V +W+V
Sbjct: 81 NLLVSASD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 206 IRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTC 265
+ L H D ++ ++ + + +++S S DG C
Sbjct: 140 KTGKC-----------------------LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 176
Query: 266 VFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSIN-GKHLAS-SES 323
G+ +++L +S + S +G+ +L D +L L+ + GK L + +
Sbjct: 177 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 236
Query: 324 NGRLNCLELS---ACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECF 380
C+ + G+++V G + + + ++ + E+V++ G ++ S A P E
Sbjct: 237 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 296
Query: 381 LAGTKDGCLLVYSIENRRT 399
+A ++EN +T
Sbjct: 297 IASA--------ALENDKT 307
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/196 (20%), Positives = 79/196 (40%), Gaps = 35/196 (17%)
Query: 143 PSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMV 202
P N LI G+++ S ++ + G+ ++++ H D VS V DGS++ + SYD +
Sbjct: 120 PQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178
Query: 203 WEVIRARAPEKRVRNMQIE------APRKDYVIVETPFHIL--------------CGHDD 242
W+ + + + + +P Y++ T + L GH +
Sbjct: 179 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 238
Query: 243 IITCLYVSVEL---DIVISGSKDGTCVFHTLREGRYVRSL-----------CHPSGSALS 288
C++ + + ++SGS+D L+ V+ L CHP+ + ++
Sbjct: 239 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIA 298
Query: 289 KLAASRHGRIVLYGDD 304
A I LY D
Sbjct: 299 SAALENDKTIKLYKSD 314
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/259 (18%), Positives = 115/259 (44%), Gaps = 37/259 (14%)
Query: 146 NFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEV 205
N L++ + + + ++ ++ G+ +++++ H + V C +++ +GS+D +V +W+V
Sbjct: 81 NLLVSASD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 206 IRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTC 265
+ L H D ++ ++ + + +++S S DG C
Sbjct: 140 KTGKC-----------------------LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 176
Query: 266 VFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSIN-GKHLAS-SES 323
G+ +++L +S + S +G+ +L D +L L+ + GK L + +
Sbjct: 177 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 236
Query: 324 NGRLNCLELS---ACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECF 380
C+ + G+++V G + + + ++ + E+V++ G ++ S A P E
Sbjct: 237 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 296
Query: 381 LAGTKDGCLLVYSIENRRT 399
+A ++EN +T
Sbjct: 297 IASA--------ALENDKT 307
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/196 (20%), Positives = 79/196 (40%), Gaps = 35/196 (17%)
Query: 143 PSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMV 202
P N LI G+++ S ++ + G+ ++++ H D VS V DGS++ + SYD +
Sbjct: 120 PQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178
Query: 203 WEVIRARAPEKRVRNMQIE------APRKDYVIVETPFHIL--------------CGHDD 242
W+ + + + + +P Y++ T + L GH +
Sbjct: 179 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 238
Query: 243 IITCLYVSVEL---DIVISGSKDGTCVFHTLREGRYVRSL-----------CHPSGSALS 288
C++ + + ++SGS+D L+ V+ L CHP+ + ++
Sbjct: 239 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIA 298
Query: 289 KLAASRHGRIVLYGDD 304
A I L+ D
Sbjct: 299 SAALENDKTIKLFKSD 314
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/259 (18%), Positives = 119/259 (45%), Gaps = 37/259 (14%)
Query: 146 NFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEV 205
N L++ + + + ++ ++ G+ +++++ H + V C +++ +GS+D +V +W+V
Sbjct: 81 NLLVSASD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 206 IRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTC 265
K + ++T L H D ++ ++ + + +++S S DG C
Sbjct: 140 -------------------KTGMCLKT----LPAHSDPVSAVHFNRDGSLIVSSSYDGLC 176
Query: 266 VFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSIN-GKHLAS-SES 323
G+ +++L +S + S +G+ +L D +L L+ + GK L + +
Sbjct: 177 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 236
Query: 324 NGRLNCLELS---ACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECF 380
C+ + G+++V G + + + ++ + E+V++ G ++ S A P E
Sbjct: 237 KNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 296
Query: 381 LAGTKDGCLLVYSIENRRT 399
+A ++EN +T
Sbjct: 297 IASA--------ALENDKT 307
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/196 (20%), Positives = 78/196 (39%), Gaps = 35/196 (17%)
Query: 143 PSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMV 202
P N LI G+++ S ++ + G ++++ H D VS V DGS++ + SYD +
Sbjct: 120 PQSN-LIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178
Query: 203 WEVIRARAPEKRVRNMQIE------APRKDYVIVETPFHIL--------------CGHDD 242
W+ + + + + +P Y++ T + L GH +
Sbjct: 179 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 238
Query: 243 IITCLYVSVEL---DIVISGSKDGTCVFHTLREGRYVRSL-----------CHPSGSALS 288
C++ + + ++SGS+D L+ V+ L CHP+ + ++
Sbjct: 239 EKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIA 298
Query: 289 KLAASRHGRIVLYGDD 304
A I L+ D
Sbjct: 299 SAALENDKTIKLWKSD 314
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/223 (21%), Positives = 99/223 (44%), Gaps = 28/223 (12%)
Query: 165 DGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPR 224
+G+++Q++ H V+ VA DG +A+ S D TV +W RN Q+
Sbjct: 251 NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN-----------RNGQL---- 295
Query: 225 KDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSG 284
L GH + + S + + S S D T R G+++++L S
Sbjct: 296 ---------LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQHLQTLTGHS- 344
Query: 285 SALSKLAASRHGRIVLYGDDDLSLHLFSINGKHLAS-SESNGRLNCLELSACGQFLVCGG 343
S++ +A S G+ + DD ++ L++ NG+ L + + + + + S GQ +
Sbjct: 345 SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASAS 404
Query: 344 DQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFLAGTKD 386
D + + + N ++++ +G + +A +P++ +A D
Sbjct: 405 DDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDDQTIASASD 446
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/223 (21%), Positives = 96/223 (43%), Gaps = 28/223 (12%)
Query: 165 DGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPR 224
+G+++Q++ H V VA + DG +A+ S D TV +W RN Q+
Sbjct: 87 NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-----------RNGQL---- 131
Query: 225 KDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSG 284
L GH + + S + + S S D T R G+ +++L S
Sbjct: 132 ---------LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHS- 180
Query: 285 SALSKLAASRHGRIVLYGDDDLSLHLFSINGKHLAS-SESNGRLNCLELSACGQFLVCGG 343
S++ +A S G+ + DD ++ L++ NG+ L + + + + + S GQ +
Sbjct: 181 SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASAS 240
Query: 344 DQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFLAGTKD 386
D + + + N ++++ +G + +A P+ +A D
Sbjct: 241 DDKTVKLWNRNG-QLLQTLTGHSSSVNGVAFRPDGQTIASASD 282
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 96/219 (43%), Gaps = 28/219 (12%)
Query: 165 DGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPR 224
+G+++Q++ H V VA + DG +A+ S D TV +W RN Q+
Sbjct: 374 NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-----------RNGQL---- 418
Query: 225 KDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSG 284
L GH + + S + + S S D T R G+ +++L S
Sbjct: 419 ---------LQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN-RNGQLLQTLTGHS- 467
Query: 285 SALSKLAASRHGRIVLYGDDDLSLHLFSINGKHLAS-SESNGRLNCLELSACGQFLVCGG 343
S++ +A S G+ + DD ++ L++ NG+ L + + + + + S GQ +
Sbjct: 468 SSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASAS 527
Query: 344 DQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFLA 382
D + + + N ++++ +G + +A +P+ +A
Sbjct: 528 DDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIA 565
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/223 (21%), Positives = 97/223 (43%), Gaps = 28/223 (12%)
Query: 165 DGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPR 224
+G+++Q++ H V VA + DG +A+ S D TV +W RN Q+
Sbjct: 46 NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-----------RNGQL---- 90
Query: 225 KDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSG 284
L GH + + S + + S S D T R G+ +++L S
Sbjct: 91 ---------LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHS- 139
Query: 285 SALSKLAASRHGRIVLYGDDDLSLHLFSINGKHLAS-SESNGRLNCLELSACGQFLVCGG 343
S++ +A S G+ + DD ++ L++ NG+ L + + + + + S GQ +
Sbjct: 140 SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASAS 199
Query: 344 DQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFLAGTKD 386
D + + + N ++++ +G + +A +P+ +A D
Sbjct: 200 DDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTIASASD 241
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 90/216 (41%), Gaps = 28/216 (12%)
Query: 172 IRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVE 231
+ H V VA + DG +A+ S D TV +W RN Q+
Sbjct: 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-----------RNGQL----------- 49
Query: 232 TPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLA 291
L GH + + S + + S S D T R G+ +++L S S++ +A
Sbjct: 50 --LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHS-SSVRGVA 105
Query: 292 ASRHGRIVLYGDDDLSLHLFSINGKHLAS-SESNGRLNCLELSACGQFLVCGGDQGQIVV 350
S G+ + DD ++ L++ NG+ L + + + + + S GQ + D + +
Sbjct: 106 FSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL 165
Query: 351 RSMNSLEVVRRYSGVGKIITSLAVTPEECFLAGTKD 386
+ N ++++ +G + +A +P+ +A D
Sbjct: 166 WNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIASASD 200
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 62/147 (42%), Gaps = 26/147 (17%)
Query: 165 DGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPR 224
+G+++Q++ H V VA + DG +A+ S D TV +W RN Q+
Sbjct: 456 NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-----------RNGQL---- 500
Query: 225 KDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSG 284
L GH + + S + + S S D T R G+ +++L S
Sbjct: 501 ---------LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHS- 549
Query: 285 SALSKLAASRHGRIVLYGDDDLSLHLF 311
S++ +A S G+ + D ++ L+
Sbjct: 550 SSVWGVAFSPDGQTIASASSDKTVKLW 576
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/238 (20%), Positives = 101/238 (42%), Gaps = 28/238 (11%)
Query: 164 NDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAP 223
N G +++R H VS V +++DG +GS+D T+ +W++ + V
Sbjct: 74 NYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFV-------- 125
Query: 224 RKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTC-VFHTLREGRY-VRSLCH 281
GH + + S + ++SGS+D T +++TL +Y V+ H
Sbjct: 126 ---------------GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESH 170
Query: 282 PSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKHLASSE--SNGRLNCLELSACGQFL 339
+ + + + I++ D + ++++ L ++ G LN + +S G
Sbjct: 171 SEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLC 230
Query: 340 VCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFLAGTKDGCLLVYSIENR 397
GG GQ ++ +N + + G G II +L +P +L + ++ +E +
Sbjct: 231 ASGGKDGQAMLWDLNEGKHLYTLDG-GDIINALCFSPNRYWLCAATGPSIKIWDLEGK 287
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/224 (21%), Positives = 88/224 (39%), Gaps = 36/224 (16%)
Query: 152 GNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWE------- 204
G+W+ + ++ L G + H V VA ++D + +GS D T+ +W
Sbjct: 104 GSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKY 163
Query: 205 VIRARAPEKRVRNMQIEAPRKDYVIVETPFHILC---------------GHDDIITCLYV 249
++ + + V ++ + +IV + L GH + + V
Sbjct: 164 TVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTV 223
Query: 250 SVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLH 309
S + + SG KDG + L EG+++ +L G ++ L S + R L S+
Sbjct: 224 SPDGSLCASGGKDGQAMLWDLNEGKHLYTL--DGGDIINALCFSPN-RYWLCAATGPSIK 280
Query: 310 LFSINGK--------HLASSESNG---RLNCLELSACGQFLVCG 342
++ + GK + S+ S + L SA GQ L G
Sbjct: 281 IWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAG 324
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 128 ESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTD 187
ES C S +++CG W+ +V L + ++ + H ++ V V+ D
Sbjct: 168 ESHSEWVSCVRFSPNSSNPIIVSCG-WDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPD 226
Query: 188 GSILATGSYDTTVMVWEVIRAR 209
GS+ A+G D M+W++ +
Sbjct: 227 GSLCASGGKDGQAMLWDLNEGK 248
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/238 (20%), Positives = 101/238 (42%), Gaps = 28/238 (11%)
Query: 164 NDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAP 223
N G +++R H VS V +++DG +GS+D T+ +W++ + V
Sbjct: 51 NYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFV-------- 102
Query: 224 RKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTC-VFHTLREGRY-VRSLCH 281
GH + + S + ++SGS+D T +++TL +Y V+ H
Sbjct: 103 ---------------GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESH 147
Query: 282 PSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKHLASSE--SNGRLNCLELSACGQFL 339
+ + + + I++ D + ++++ L ++ G LN + +S G
Sbjct: 148 SEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLC 207
Query: 340 VCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFLAGTKDGCLLVYSIENR 397
GG GQ ++ +N + + G G II +L +P +L + ++ +E +
Sbjct: 208 ASGGKDGQAMLWDLNEGKHLYTLDG-GDIINALCFSPNRYWLCAATGPSIKIWDLEGK 264
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/224 (21%), Positives = 88/224 (39%), Gaps = 36/224 (16%)
Query: 152 GNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWE------- 204
G+W+ + ++ L G + H V VA ++D + +GS D T+ +W
Sbjct: 81 GSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKY 140
Query: 205 VIRARAPEKRVRNMQIEAPRKDYVIVETPFHILC---------------GHDDIITCLYV 249
++ + + V ++ + +IV + L GH + + V
Sbjct: 141 TVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTV 200
Query: 250 SVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLH 309
S + + SG KDG + L EG+++ +L G ++ L S + R L S+
Sbjct: 201 SPDGSLCASGGKDGQAMLWDLNEGKHLYTL--DGGDIINALCFSPN-RYWLCAATGPSIK 257
Query: 310 LFSINGK--------HLASSESNG---RLNCLELSACGQFLVCG 342
++ + GK + S+ S + L SA GQ L G
Sbjct: 258 IWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAG 301
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 128 ESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTD 187
ES C S +++CG W+ +V L + ++ + H ++ V V+ D
Sbjct: 145 ESHSEWVSCVRFSPNSSNPIIVSCG-WDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPD 203
Query: 188 GSILATGSYDTTVMVWEV 205
GS+ A+G D M+W++
Sbjct: 204 GSLCASGGKDGQAMLWDL 221
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 101/244 (41%), Gaps = 41/244 (16%)
Query: 175 HRDVVSCVAV------TTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYV 228
H D V+ + D +L +GS D TVM+W++ E + Y
Sbjct: 20 HSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKL--------------YEEEQNGYF 65
Query: 229 IVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREG-RYVRSLCHPSGSAL 287
+ P L GH+ ++ L +S E IS S D T LR G Y R + H S +
Sbjct: 66 GI--PHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQ--SEV 121
Query: 288 SKLAASRHGRIVLYGDDDLSLHLFSINGK-HLASSESNGR---LNCLELSACGQ------ 337
+A S R +L + + L++I G+ +S+E ++C+ S +
Sbjct: 122 YSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQ 181
Query: 338 ----FLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFLA-GTKDGCLLVY 392
+ G G++ V + N ++ + + L+++P ++A G KD LL++
Sbjct: 182 PFAPYFASVGWDGRLKVWNTN-FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIW 240
Query: 393 SIEN 396
I N
Sbjct: 241 DILN 244
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 12/61 (19%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 154 WENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEK 213
W+ +V N ++ + + H V+ ++++ +G +ATG D +++W+++ P++
Sbjct: 192 WDGRLKVWNTN-FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQR 250
Query: 214 R 214
Sbjct: 251 E 251
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/239 (20%), Positives = 97/239 (40%), Gaps = 36/239 (15%)
Query: 166 GRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRK 225
G V+S + H +V +T DG+ + S+D T+ +W+V ++ V
Sbjct: 55 GVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV---------- 104
Query: 226 DYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGS 285
GH + + + + ++ISGS+D T T++ L H
Sbjct: 105 -------------GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWV 151
Query: 286 ALSKLAASRHG-----RIVLYGDDDL----SLHLFSINGKHLASSESNGRLNCLELSACG 336
+ ++ + I+ G+D + +L+ F I + N +N L S G
Sbjct: 152 SQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIG---HNSNINTLTASPDG 208
Query: 337 QFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFLAGTKDGCLLVYSIE 395
+ G G+I++ ++ + + + S ++ SLA +P +LA + V+S++
Sbjct: 209 TLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVF-SLAFSPNRYWLAAATATGIKVFSLD 266
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 59/274 (21%), Positives = 105/274 (38%), Gaps = 38/274 (13%)
Query: 73 SSIVLVNQGLTLSVKMWLTTQLQSGG--NFTFSGSQDPFFGVGADILSPRNVGSPLAESF 130
S+ VLV +G W+T+ S G N S S+D + G P+ SF
Sbjct: 3 SNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPV-RSF 61
Query: 131 ELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSI 190
+ S ++ +W+ + ++ + G Q H+ V V + S+
Sbjct: 62 KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM 121
Query: 191 LATGSYDTTVMVWEV--------IRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDD 242
+ +GS D T+ VW + + +VR + E D V + I G+D
Sbjct: 122 IISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTI-----ISAGNDK 176
Query: 243 IITCLYVS---VELDIV--------ISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLA 291
++ ++ +E D + ++ S DGT + ++G + L LA
Sbjct: 177 MVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIM----------LWNLA 226
Query: 292 ASRHGRIVLYGDDDLSLHLFSINGKHLASSESNG 325
A + + D+ SL FS N LA++ + G
Sbjct: 227 AKKAMYTLSAQDEVFSL-AFSPNRYWLAAATATG 259
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/239 (20%), Positives = 97/239 (40%), Gaps = 36/239 (15%)
Query: 166 GRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRK 225
G V+S + H +V +T DG+ + S+D T+ +W+V ++ V
Sbjct: 49 GVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV---------- 98
Query: 226 DYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGS 285
GH + + + + ++ISGS+D T T++ L H
Sbjct: 99 -------------GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWV 145
Query: 286 ALSKLAASRHG-----RIVLYGDDDL----SLHLFSINGKHLASSESNGRLNCLELSACG 336
+ ++ + I+ G+D + +L+ F I + N +N L S G
Sbjct: 146 SQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIG---HNSNINTLTASPDG 202
Query: 337 QFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFLAGTKDGCLLVYSIE 395
+ G G+I++ ++ + + + S ++ SLA +P +LA + V+S++
Sbjct: 203 TLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVF-SLAFSPNRYWLAAATATGIKVFSLD 260
Score = 35.4 bits (80), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 54/258 (20%), Positives = 98/258 (37%), Gaps = 38/258 (14%)
Query: 89 WLTTQLQSGG--NFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSEN 146
W+T+ S G N S S+D + G P+ SF+ S ++
Sbjct: 13 WVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPV-RSFKGHSHIVQDCTLTADG 71
Query: 147 FLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEV- 205
+W+ + ++ + G Q H+ V V + S++ +GS D T+ VW +
Sbjct: 72 AYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK 131
Query: 206 -------IRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVS---VELDI 255
+ +VR + E D V + I G+D ++ ++ +E D
Sbjct: 132 GQCLATLLGHNDWVSQVRVVPNEKADDDSVTI-----ISAGNDKMVKAWNLNQFQIEADF 186
Query: 256 V--------ISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLS 307
+ ++ S DGT + ++G + L LAA + + D+ S
Sbjct: 187 IGHNSNINTLTASPDGTLIASAGKDGEIM----------LWNLAAKKAMYTLSAQDEVFS 236
Query: 308 LHLFSINGKHLASSESNG 325
L FS N LA++ + G
Sbjct: 237 L-AFSPNRYWLAAATATG 253
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/239 (20%), Positives = 97/239 (40%), Gaps = 36/239 (15%)
Query: 166 GRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRK 225
G V+S + H +V +T DG+ + S+D T+ +W+V ++ V
Sbjct: 55 GVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV---------- 104
Query: 226 DYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGS 285
GH + + + + ++ISGS+D T T++ L H
Sbjct: 105 -------------GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWV 151
Query: 286 ALSKLAASRHG-----RIVLYGDDDL----SLHLFSINGKHLASSESNGRLNCLELSACG 336
+ ++ + I+ G+D + +L+ F I + N +N L S G
Sbjct: 152 SQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIG---HNSNINTLTASPDG 208
Query: 337 QFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFLAGTKDGCLLVYSIE 395
+ G G+I++ ++ + + + S ++ SLA +P +LA + V+S++
Sbjct: 209 TLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVF-SLAFSPNRYWLAAATATGIKVFSLD 266
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 59/274 (21%), Positives = 105/274 (38%), Gaps = 38/274 (13%)
Query: 73 SSIVLVNQGLTLSVKMWLTTQLQSGG--NFTFSGSQDPFFGVGADILSPRNVGSPLAESF 130
S+ VLV +G W+T+ S G N S S+D + G P+ SF
Sbjct: 3 SNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPV-RSF 61
Query: 131 ELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSI 190
+ S ++ +W+ + ++ + G Q H+ V V + S+
Sbjct: 62 KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM 121
Query: 191 LATGSYDTTVMVWEV--------IRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDD 242
+ +GS D T+ VW + + +VR + E D V + I G+D
Sbjct: 122 IISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTI-----ISAGNDK 176
Query: 243 IITCLYVS---VELDIV--------ISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLA 291
++ ++ +E D + ++ S DGT + ++G + L LA
Sbjct: 177 MVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIM----------LWNLA 226
Query: 292 ASRHGRIVLYGDDDLSLHLFSINGKHLASSESNG 325
A + + D+ SL FS N LA++ + G
Sbjct: 227 AKKAMYTLSAQDEVFSL-AFSPNRYWLAAATATG 259
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/239 (20%), Positives = 97/239 (40%), Gaps = 36/239 (15%)
Query: 166 GRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRK 225
G V+S + H +V +T DG+ + S+D T+ +W+V ++ V
Sbjct: 55 GVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV---------- 104
Query: 226 DYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGS 285
GH + + + + ++ISGS+D T T++ L H
Sbjct: 105 -------------GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWV 151
Query: 286 ALSKLAASRHG-----RIVLYGDDDL----SLHLFSINGKHLASSESNGRLNCLELSACG 336
+ ++ + I+ G+D + +L+ F I + N +N L S G
Sbjct: 152 SQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIG---HNSNINTLTASPDG 208
Query: 337 QFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFLAGTKDGCLLVYSIE 395
+ G G+I++ ++ + + + S ++ SLA +P +LA + V+S++
Sbjct: 209 TLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVF-SLAFSPNRYWLAAATATGIKVFSLD 266
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 59/274 (21%), Positives = 105/274 (38%), Gaps = 38/274 (13%)
Query: 73 SSIVLVNQGLTLSVKMWLTTQLQSGG--NFTFSGSQDPFFGVGADILSPRNVGSPLAESF 130
S+ VLV +G W+T+ S G N S S+D + G P+ SF
Sbjct: 3 SNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPV-RSF 61
Query: 131 ELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSI 190
+ S ++ +W+ + ++ + G Q H+ V V + S+
Sbjct: 62 KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM 121
Query: 191 LATGSYDTTVMVWEV--------IRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDD 242
+ +GS D T+ VW + + +VR + E D V + I G+D
Sbjct: 122 IISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTI-----ISAGNDK 176
Query: 243 IITCLYVS---VELDIV--------ISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLA 291
++ ++ +E D + ++ S DGT + ++G + L LA
Sbjct: 177 MVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIM----------LWNLA 226
Query: 292 ASRHGRIVLYGDDDLSLHLFSINGKHLASSESNG 325
A + + D+ SL FS N LA++ + G
Sbjct: 227 AKKAMYTLSAQDEVFSL-AFSPNRYWLAAATATG 259
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/239 (20%), Positives = 97/239 (40%), Gaps = 36/239 (15%)
Query: 166 GRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRK 225
G V+S + H +V +T DG+ + S+D T+ +W+V ++ V
Sbjct: 55 GVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV---------- 104
Query: 226 DYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGS 285
GH + + + + ++ISGS+D T T++ L H
Sbjct: 105 -------------GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWV 151
Query: 286 ALSKLAASRHG-----RIVLYGDDDL----SLHLFSINGKHLASSESNGRLNCLELSACG 336
+ ++ + I+ G+D + +L+ F I + N +N L S G
Sbjct: 152 SQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIG---HNSNINTLTASPDG 208
Query: 337 QFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFLAGTKDGCLLVYSIE 395
+ G G+I++ ++ + + + S ++ SLA +P +LA + V+S++
Sbjct: 209 TLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVF-SLAFSPNRYWLAAATATGIKVFSLD 266
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 59/274 (21%), Positives = 105/274 (38%), Gaps = 38/274 (13%)
Query: 73 SSIVLVNQGLTLSVKMWLTTQLQSGG--NFTFSGSQDPFFGVGADILSPRNVGSPLAESF 130
S+ VLV +G W+T+ S G N S S+D + G P+ SF
Sbjct: 3 SNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPV-RSF 61
Query: 131 ELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSI 190
+ S ++ +W+ + ++ + G Q H+ V V + S+
Sbjct: 62 KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM 121
Query: 191 LATGSYDTTVMVWEV--------IRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDD 242
+ +GS D T+ VW + + +VR + E D V + I G+D
Sbjct: 122 IISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTI-----ISAGNDK 176
Query: 243 IITCLYVS---VELDIV--------ISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLA 291
++ ++ +E D + ++ S DGT + ++G + L LA
Sbjct: 177 MVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIM----------LWNLA 226
Query: 292 ASRHGRIVLYGDDDLSLHLFSINGKHLASSESNG 325
A + + D+ SL FS N LA++ + G
Sbjct: 227 AKKAMYTLSAQDEVFSL-AFSPNRYWLAAATATG 259
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/239 (20%), Positives = 93/239 (38%), Gaps = 36/239 (15%)
Query: 166 GRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRK 225
G V+S + H +V +T DG+ + S+D T+ +W+V ++ V
Sbjct: 55 GVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV---------- 104
Query: 226 DYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGS 285
GH + + + + +ISGS+D T T++ L H
Sbjct: 105 -------------GHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQCLATLLGHNDWV 151
Query: 286 ALSKLAASRHG-----RIVLYGDDD----LSLHLFSINGKHLASSESNGRLNCLELSACG 336
+ ++ + I+ G+D +L+ F I + N +N L S G
Sbjct: 152 SQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIG---HNSNINTLTASPDG 208
Query: 337 QFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFLAGTKDGCLLVYSIE 395
+ G G+I + ++ + + S ++ SLA +P +LA + V+S++
Sbjct: 209 TLIASAGKDGEIXLWNLAAKKAXYTLSAQDEVF-SLAFSPNRYWLAAATATGIKVFSLD 266
Score = 35.0 bits (79), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 59/274 (21%), Positives = 102/274 (37%), Gaps = 38/274 (13%)
Query: 73 SSIVLVNQGLTLSVKMWLTTQLQSGG--NFTFSGSQDPFFGVGADILSPRNVGSPLAESF 130
S+ VLV +G W+T+ S G N S S+D + G P+ SF
Sbjct: 3 SNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPV-RSF 61
Query: 131 ELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSI 190
+ S ++ +W+ + ++ + G Q H+ V V + S
Sbjct: 62 KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASX 121
Query: 191 LATGSYDTTVMVWEV--------IRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDD 242
+ +GS D T+ VW + + +VR + E D V + I G+D
Sbjct: 122 IISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTI-----ISAGNDK 176
Query: 243 IITCLYVS---VELDIV--------ISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLA 291
+ ++ +E D + ++ S DGT + ++G L LA
Sbjct: 177 XVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEI----------XLWNLA 226
Query: 292 ASRHGRIVLYGDDDLSLHLFSINGKHLASSESNG 325
A + + D+ SL FS N LA++ + G
Sbjct: 227 AKKAXYTLSAQDEVFSL-AFSPNRYWLAAATATG 259
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%)
Query: 148 LITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIR 207
+I G W+N +V L GR+V ++ H + V+ V V+ DGS+ A+ D +W++ +
Sbjct: 168 VIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTK 227
Query: 208 ARA 210
A
Sbjct: 228 GEA 230
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 51/246 (20%), Positives = 99/246 (40%), Gaps = 35/246 (14%)
Query: 172 IRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRV-------------RNM 218
+ H VS VA++ +G+ + S+D ++ +W + + K + N
Sbjct: 63 LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNR 122
Query: 219 QIEAPRKD-----YVIVETPFHILC--GHDDIITCLYVSVELD--IVISGSKDGTCVFHT 269
QI + +D + + H L H D ++C+ S LD +++SG D
Sbjct: 123 QIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWD 182
Query: 270 LREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSI-NGKHLASSESNGRLN 328
L GR V L + ++ + S G + D D L+ + G+ L+ + +N
Sbjct: 183 LATGRLVTDL-KGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAPIN 241
Query: 329 CLELSACGQFLVCGGDQGQIVVRSMNS----LEVVRRYSGVGKIITSLAVTPEECFLAGT 384
+ S ++ +C + I + + + +E+ + G KI+ PE +A +
Sbjct: 242 QICFSP-NRYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIV------PECVSIAWS 294
Query: 385 KDGCLL 390
DG L
Sbjct: 295 ADGSTL 300
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/233 (21%), Positives = 102/233 (43%), Gaps = 28/233 (12%)
Query: 171 SIRQHRDVVSCVAVTTDGS-ILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVI 229
++R H D+V+ +A D + I+ + S D ++++W++ + K Y +
Sbjct: 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTK---------------DDKAYGV 421
Query: 230 VETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSK 289
+ L GH + + +S + +SGS DG L G R + LS
Sbjct: 422 AQ---RRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLS- 477
Query: 290 LAASRHGRIVLYGDDDLSLHLFSING--KHLASSESNGR---LNCLELS--ACGQFLVCG 342
+A S R ++ D ++ L++ G K+ S G ++C+ S +V
Sbjct: 478 VAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSA 537
Query: 343 GDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFLA-GTKDGCLLVYSI 394
+ V ++++ ++ +G ++++AV+P+ A G KDG +L++ +
Sbjct: 538 SWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDL 590
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 36/61 (59%)
Query: 149 ITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRA 208
I +W+ + +V L++ ++ ++ H VS VAV+ DGS+ A+G D V++W++
Sbjct: 534 IVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG 593
Query: 209 R 209
+
Sbjct: 594 K 594
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 79/195 (40%), Gaps = 42/195 (21%)
Query: 94 LQSGGNFTFSGSQDP---FFGVGADILSPRNVGSP---LAESFELGS-QCFTTMQTPSEN 146
L S G F SGS D + + A + + R VG L+ +F L + Q + + +
Sbjct: 438 LSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIK 497
Query: 147 FLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVT--TDGSILATGSYDTTVMVWE 204
T G E + + +G HRD VSCV + T + + S+D TV VW
Sbjct: 498 LWNTLG--ECKYTISEGGEG--------HRDWVSCVRFSPNTLQPTIVSASWDKTVKVW- 546
Query: 205 VIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGT 264
+ N ++ + L GH ++ + VS + + SG KDG
Sbjct: 547 ---------NLSNCKLRS-------------TLAGHTGYVSTVAVSPDGSLCASGGKDGV 584
Query: 265 CVFHTLREGRYVRSL 279
+ L EG+ + SL
Sbjct: 585 VLLWDLAEGKKLYSL 599
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 86/211 (40%), Gaps = 27/211 (12%)
Query: 175 HRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRV-------------RNMQIE 221
H V V +++DG +GS+D + +W++ + + V N QI
Sbjct: 429 HSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIV 488
Query: 222 APRKDYVIV------ETPFHIL---CGHDDIITCLYVSVEL--DIVISGSKDGTCVFHTL 270
+ +D I E + I GH D ++C+ S ++S S D T L
Sbjct: 489 SASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNL 548
Query: 271 REGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSI-NGKHLASSESNGRLNC 329
+ +L +G +S +A S G + G D + L+ + GK L S E+N ++
Sbjct: 549 SNCKLRSTLAGHTGY-VSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHA 607
Query: 330 LELSACGQFLVCGGDQGQIVVRSMNSLEVVR 360
L S ++ +C + I + + S +V
Sbjct: 608 LCFSP-NRYWLCAATEHGIKIWDLESKSIVE 637
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 5/114 (4%)
Query: 111 GVGADILSPRNVGSPL----AESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDG 166
G A LS ++ +P AE C+ +P +C + + + V L++
Sbjct: 115 GGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCS-DGNIAVWDLHNQ 173
Query: 167 RVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQI 220
+V+ + H D SC+ ++ DG+ L TG D TV W++ R ++ QI
Sbjct: 174 TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQI 227
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 38/183 (20%), Positives = 71/183 (38%), Gaps = 32/183 (17%)
Query: 187 DGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILC-------- 238
DG L G +T+ +W++ AP R++ + Y + +P +C
Sbjct: 108 DGCTLIVGGEASTLSIWDLA---APTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGN 164
Query: 239 ----------------GHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHP 282
GH D +C+ +S + + +G D T LREGR ++ H
Sbjct: 165 IAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ--HD 222
Query: 283 SGSALSKLAASRHGRIVLYGDDDLSLHLFSIN--GKHLASSESNGRLNCLELSACGQFLV 340
S + L G + G + ++ + +N K+ + L+ L+ + CG++ V
Sbjct: 223 FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLS-LKFAYCGKWFV 281
Query: 341 CGG 343
G
Sbjct: 282 STG 284
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 113/287 (39%), Gaps = 56/287 (19%)
Query: 144 SENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVT-TDGSILATGSYDTTVMV 202
S++ + NWEN++ + Q+ H V CVA D S A+G D TV V
Sbjct: 116 SDDLTVKLWNWENNWAL--------EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKV 167
Query: 203 WEVIRAR-------APEKRVRNMQIEA-PRKDYVIVETP--------------FHILCGH 240
W + ++ E+ V + P K Y+I + L GH
Sbjct: 168 WSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH 227
Query: 241 DDIITCLYVSVELDIVISGSKDGTC---------VFHTLREGRYVRSLC---HPSGSALS 288
++ L I+ISGS+DGT V TL G RS C HP+G
Sbjct: 228 MSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG-LERSWCIATHPTGRKNY 286
Query: 289 KLAASRHGRIVL-YGDDDLSLHLFSINGKHLASSESNGRLNCLELSAC-GQFLVCGGDQG 346
+ +G VL G+D+ +L L + GK + S N + + + G V +
Sbjct: 287 IASGFDNGFTVLSLGNDEPTLSLDPV-GKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPL 345
Query: 347 QIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFLAGTKDGCLLVYS 393
+ + + S++V + SLA +P F+ DG ++Y+
Sbjct: 346 SLQTKELGSVDVFPQ---------SLAHSPNGRFVTVVGDGEYVIYT 383
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 113/287 (39%), Gaps = 56/287 (19%)
Query: 144 SENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVT-TDGSILATGSYDTTVMV 202
S++ + NWEN++ + Q+ H V CVA D S A+G D TV V
Sbjct: 116 SDDLTVKLWNWENNWAL--------EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKV 167
Query: 203 WEVIRAR-------APEKRVRNMQIEA-PRKDYVIVETP--------------FHILCGH 240
W + ++ E+ V + P K Y+I + L GH
Sbjct: 168 WSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH 227
Query: 241 DDIITCLYVSVELDIVISGSKDGTC---------VFHTLREGRYVRSLC---HPSGSALS 288
++ L I+ISGS+DGT V TL G RS C HP+G
Sbjct: 228 MSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG-LERSWCIATHPTGRKNY 286
Query: 289 KLAASRHGRIVL-YGDDDLSLHLFSINGKHLASSESNGRLNCLELSAC-GQFLVCGGDQG 346
+ +G VL G+D+ +L L + GK + S N + + + G V +
Sbjct: 287 IASGFDNGFTVLSLGNDEPTLSLDPV-GKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPL 345
Query: 347 QIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFLAGTKDGCLLVYS 393
+ + + S++V + SLA +P F+ DG ++Y+
Sbjct: 346 SLQTKELGSVDVFPQ---------SLAHSPNGRFVTVVGDGEYVIYT 383
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/267 (21%), Positives = 108/267 (40%), Gaps = 33/267 (12%)
Query: 102 FSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVI 161
S SQD + + + PL S+ + T PS N+ + CG +N +
Sbjct: 71 LSASQDGKLIIWDSYTTNKVHAIPLRSSWVM-----TCAYAPSGNY-VACGGLDNICSIY 124
Query: 162 ALN----DGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIR---------- 207
L + RV + + H +SC D I+ T S DTT +W++
Sbjct: 125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIV-TSSGDTTCALWDIETGQQTTTFTGH 183
Query: 208 -------ARAPEKRVR-NMQIEAPRKDYVIVE-TPFHILCGHDDIITCLYVSVELDIVIS 258
+ AP+ R+ + +A K + + E GH+ I + + +
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFAT 243
Query: 259 GSKDGTCVFHTLREGRYVRSLCHPS-GSALSKLAASRHGRIVLYGDDDLSLHLFSINGKH 317
GS D TC LR + + + H + ++ ++ S+ GR++L G DD + +++
Sbjct: 244 GSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD 303
Query: 318 LAS--SESNGRLNCLELSACGQFLVCG 342
A + + R++CL ++ G + G
Sbjct: 304 RAGVLAGHDNRVSCLGVTDDGMAVATG 330
Score = 35.4 bits (80), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 175 HRDVVSCVAVTTDGSILATGSYDTTVMVWE 204
H + VSC+ VT DG +ATGS+D+ + +W
Sbjct: 311 HDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/267 (21%), Positives = 108/267 (40%), Gaps = 33/267 (12%)
Query: 102 FSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVI 161
S SQD + + + PL S+ + T PS N+ + CG +N +
Sbjct: 71 LSASQDGKLIIWDSYTTNKVHAIPLRSSWVM-----TCAYAPSGNY-VACGGLDNICSIY 124
Query: 162 ALN----DGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIR---------- 207
L + RV + + H +SC D I+ T S DTT +W++
Sbjct: 125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIV-TSSGDTTCALWDIETGQQTTTFTGH 183
Query: 208 -------ARAPEKRVR-NMQIEAPRKDYVIVE-TPFHILCGHDDIITCLYVSVELDIVIS 258
+ AP+ R+ + +A K + + E GH+ I + + +
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFAT 243
Query: 259 GSKDGTCVFHTLREGRYVRSLCHPS-GSALSKLAASRHGRIVLYGDDDLSLHLFSINGKH 317
GS D TC LR + + + H + ++ ++ S+ GR++L G DD + +++
Sbjct: 244 GSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD 303
Query: 318 LAS--SESNGRLNCLELSACGQFLVCG 342
A + + R++CL ++ G + G
Sbjct: 304 RAGVLAGHDNRVSCLGVTDDGMAVATG 330
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 175 HRDVVSCVAVTTDGSILATGSYDTTVMVWE 204
H + VSC+ VT DG +ATGS+D+ + +W
Sbjct: 311 HDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/266 (21%), Positives = 108/266 (40%), Gaps = 33/266 (12%)
Query: 103 SGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIA 162
S SQD + + + PL S+ + T PS N+ + CG +N +
Sbjct: 83 SASQDGKLIIWDSYTTNKVHAIPLRSSWVM-----TCAYAPSGNY-VACGGLDNICSIYN 136
Query: 163 LN----DGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIR----------- 207
L + RV + + H +SC D I+ T S DTT +W++
Sbjct: 137 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIV-TSSGDTTCALWDIETGQQTTTFTGHT 195
Query: 208 ------ARAPEKRVR-NMQIEAPRKDYVIVE-TPFHILCGHDDIITCLYVSVELDIVISG 259
+ AP+ R+ + +A K + + E GH+ I + + +G
Sbjct: 196 GDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATG 255
Query: 260 SKDGTCVFHTLREGRYVRSLCHPS-GSALSKLAASRHGRIVLYGDDDLSLHLFSINGKHL 318
S D TC LR + + + H + ++ ++ S+ GR++L G DD + +++
Sbjct: 256 SDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADR 315
Query: 319 AS--SESNGRLNCLELSACGQFLVCG 342
A + + R++CL ++ G + G
Sbjct: 316 AGVLAGHDNRVSCLGVTDDGMAVATG 341
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 175 HRDVVSCVAVTTDGSILATGSYDTTVMVWE 204
H + VSC+ VT DG +ATGS+D+ + +W
Sbjct: 322 HDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/266 (21%), Positives = 108/266 (40%), Gaps = 33/266 (12%)
Query: 103 SGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIA 162
S SQD + + + PL S+ + T PS N+ + CG +N +
Sbjct: 72 SASQDGKLIIWDSYTTNKVHAIPLRSSWVM-----TCAYAPSGNY-VACGGLDNICSIYN 125
Query: 163 LN----DGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIR----------- 207
L + RV + + H +SC D I+ T S DTT +W++
Sbjct: 126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIV-TSSGDTTCALWDIETGQQTTTFTGHT 184
Query: 208 ------ARAPEKRVR-NMQIEAPRKDYVIVE-TPFHILCGHDDIITCLYVSVELDIVISG 259
+ AP+ R+ + +A K + + E GH+ I + + +G
Sbjct: 185 GDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATG 244
Query: 260 SKDGTCVFHTLREGRYVRSLCHPS-GSALSKLAASRHGRIVLYGDDDLSLHLFSINGKHL 318
S D TC LR + + + H + ++ ++ S+ GR++L G DD + +++
Sbjct: 245 SDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADR 304
Query: 319 AS--SESNGRLNCLELSACGQFLVCG 342
A + + R++CL ++ G + G
Sbjct: 305 AGVLAGHDNRVSCLGVTDDGMAVATG 330
Score = 35.4 bits (80), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 175 HRDVVSCVAVTTDGSILATGSYDTTVMVWE 204
H + VSC+ VT DG +ATGS+D+ + +W
Sbjct: 311 HDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/266 (21%), Positives = 108/266 (40%), Gaps = 33/266 (12%)
Query: 103 SGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIA 162
S SQD + + + PL S+ + T PS N+ + CG +N +
Sbjct: 72 SASQDGKLIIWDSYTTNKVHAIPLRSSWVM-----TCAYAPSGNY-VACGGLDNICSIYN 125
Query: 163 LN----DGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIR----------- 207
L + RV + + H +SC D I+ T S DTT +W++
Sbjct: 126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIV-TSSGDTTCALWDIETGQQTTTFTGHT 184
Query: 208 ------ARAPEKRVR-NMQIEAPRKDYVIVE-TPFHILCGHDDIITCLYVSVELDIVISG 259
+ AP+ R+ + +A K + + E GH+ I + + +G
Sbjct: 185 GDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATG 244
Query: 260 SKDGTCVFHTLREGRYVRSLCHPS-GSALSKLAASRHGRIVLYGDDDLSLHLFSINGKHL 318
S D TC LR + + + H + ++ ++ S+ GR++L G DD + +++
Sbjct: 245 SDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADR 304
Query: 319 AS--SESNGRLNCLELSACGQFLVCG 342
A + + R++CL ++ G + G
Sbjct: 305 AGVLAGHDNRVSCLGVTDDGMAVATG 330
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 175 HRDVVSCVAVTTDGSILATGSYDTTVMVWE 204
H + VSC+ VT DG +ATGS+D+ + +W
Sbjct: 311 HDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/242 (21%), Positives = 99/242 (40%), Gaps = 42/242 (17%)
Query: 149 ITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVW----- 203
I G+ + +++ L + R+ QS QH+ V + T D L + S D + VW
Sbjct: 982 IAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLD 1041
Query: 204 EVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDG 263
+ I R ++ V KD+ +++ + D +V++ +I+G+K+
Sbjct: 1042 KCIFLRGHQETV---------KDFRLLKNSRLLSWSFDG-------TVKVWNIITGNKEK 1085
Query: 264 TCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKHLASSES 323
V H +G + + S +A + +I + DL L L + G
Sbjct: 1086 DFVCH---QGTVLSCDISHDATKFSSTSADKTAKIWSF---DLLLPLHELRG-------H 1132
Query: 324 NGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGV--------GKIITSLAVT 375
NG + C S L G D G+I + ++++ E++ + + G +T L +
Sbjct: 1133 NGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFS 1192
Query: 376 PE 377
P+
Sbjct: 1193 PD 1194
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 148 LITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVW 203
+ +CG + + QV G + I+ H D V C A +TD +AT S D V +W
Sbjct: 636 IASCGA-DKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIW 690
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 62/150 (41%), Gaps = 32/150 (21%)
Query: 172 IRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVE 231
+R H D V + DG +A+ D T+ +V +A EK ++I+A +
Sbjct: 617 VRPHTDAVYHACFSEDGQRIASCGADKTL---QVFKAETGEKL---LEIKAHEDE----- 665
Query: 232 TPFHILC---GHDD--IITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSA 286
+LC DD I TC SV+ + I S G V HT E + CH + S+
Sbjct: 666 ----VLCCAFSTDDRFIATC---SVDKKVKIWNSMTGELV-HTYDEHSEQVNCCHFTNSS 717
Query: 287 LSKLAASRHGRIVLYGDDDLSLHLFSINGK 316
H ++ G D L L+ +N K
Sbjct: 718 --------HHLLLATGSSDCFLKLWDLNQK 739
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 60/148 (40%), Gaps = 28/148 (18%)
Query: 138 TTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQ-------HRDVVSCVAVTTDGSI 190
T +P + I G+ + + +V G +V+ + H+D V V T DG
Sbjct: 211 TVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS 270
Query: 191 LATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILC-----GHDDIIT 245
+ +GS D +V +W N+Q + D +TP C GH D +
Sbjct: 271 VVSGSLDRSVKLW-------------NLQNANNKSD---SKTPNSGTCEVTYIGHKDFVL 314
Query: 246 CLYVSVELDIVISGSKDGTCVFHTLREG 273
+ + + ++SGSKD +F + G
Sbjct: 315 SVATTQNDEYILSGSKDRGVLFWDKKSG 342
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 23/96 (23%)
Query: 179 VSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILC 238
+ V + DG LATG+ D + +W+ + N +I IL
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWD----------IENRKI-------------VMILQ 162
Query: 239 GHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGR 274
GH+ I L D ++SGS D T LR G+
Sbjct: 163 GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ 198
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 119 PRNVGSPLAESFEL--GSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHR 176
P N+ + + S +L S CF+ P FL T G + ++ + + ++V ++ H
Sbjct: 111 PENLNTSSSPSSDLYIRSVCFS----PDGKFLAT-GAEDRLIRIWDIENRKIVMILQGHE 165
Query: 177 DVVSCVAVTTDGSILATGSYDTTVMVWEV 205
+ + G L +GS D TV +W++
Sbjct: 166 QDIYSLDYFPSGDKLVSGSGDRTVRIWDL 194
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 148 LITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWE 204
+ +CG + + QV G + I+ H D V C A ++D S +AT S D V +W+
Sbjct: 637 IASCGA-DKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWD 692
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 82/214 (38%), Gaps = 40/214 (18%)
Query: 149 ITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRA 208
+ G+ + + ++I L + RV S H+ V + T DG L + S D+ + VW
Sbjct: 983 VAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVW----- 1037
Query: 209 RAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFH 268
N Q DYV ++ H + + + ++ ++S S DGT
Sbjct: 1038 --------NWQT----GDYVFLQ-------AHQETVKDFRL-LQDSRLLSWSFDGTVKVW 1077
Query: 269 TLREGRYVRSLCHPSGSALS--------KLAASRHGRIVLYGDDDLSLHLFSINGKHLAS 320
+ GR R G+ LS K +++ + DL L + G
Sbjct: 1078 NVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGH---- 1133
Query: 321 SESNGRLNCLELSACGQFLVCGGDQGQIVVRSMN 354
NG + C S G L G D G+I + +++
Sbjct: 1134 ---NGCVRCSAFSLDGILLATGDDNGEIRIWNVS 1164
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 165 DGRV-VQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIR 207
D R+ V R H V V + DGS T S D T+ VWE +
Sbjct: 877 DSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK 920
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 148 LITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWE 204
+ +CG + + QV G + I+ H D V C A ++D S +AT S D V +W+
Sbjct: 630 IASCGA-DKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWD 685
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 82/214 (38%), Gaps = 40/214 (18%)
Query: 149 ITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRA 208
+ G+ + + ++I L + RV S H+ V + T DG L + S D+ + VW
Sbjct: 976 VAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVW----- 1030
Query: 209 RAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFH 268
N Q DYV ++ H + + + ++ ++S S DGT
Sbjct: 1031 --------NWQT----GDYVFLQ-------AHQETVKDFRL-LQDSRLLSWSFDGTVKVW 1070
Query: 269 TLREGRYVRSLCHPSGSALS--------KLAASRHGRIVLYGDDDLSLHLFSINGKHLAS 320
+ GR R G+ LS K +++ + DL L + G
Sbjct: 1071 NVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGH---- 1126
Query: 321 SESNGRLNCLELSACGQFLVCGGDQGQIVVRSMN 354
NG + C S G L G D G+I + +++
Sbjct: 1127 ---NGCVRCSAFSLDGILLATGDDNGEIRIWNVS 1157
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 165 DGRV-VQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIR 207
D R+ V R H V V + DGS T S D T+ VWE +
Sbjct: 870 DSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK 913
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 77/198 (38%), Gaps = 45/198 (22%)
Query: 144 SENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVT-TDGSILATGSYDTTVMV 202
S++ + NWEN++ + Q+ H V CVA D S A+G D TV V
Sbjct: 116 SDDLTVKLWNWENNWAL--------EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKV 167
Query: 203 WEVIRAR-------APEKRVRNMQIEA-PRKDYVIVETP--------------FHILCGH 240
W + ++ E+ V + P K Y+I + L GH
Sbjct: 168 WSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH 227
Query: 241 DDIITCLYVSVELDIVISGSKDGTC---------VFHTLREGRYVRSLC---HPSGSALS 288
++ L I+ISGS+DGT V TL G RS C HP+G
Sbjct: 228 MSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG-LERSWCIATHPTGRKNY 286
Query: 289 KLAASRHGRIVL-YGDDD 305
+ +G VL G+D+
Sbjct: 287 IASGFDNGFTVLSLGNDE 304
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 77/198 (38%), Gaps = 45/198 (22%)
Query: 144 SENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVT-TDGSILATGSYDTTVMV 202
S++ + NWEN++ + Q+ H V CVA D S A+G D TV V
Sbjct: 116 SDDLTVKLWNWENNWAL--------EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKV 167
Query: 203 WEVIRAR-------APEKRVRNMQIEA-PRKDYVIVETP--------------FHILCGH 240
W + ++ E+ V + P K Y+I + L GH
Sbjct: 168 WSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH 227
Query: 241 DDIITCLYVSVELDIVISGSKDGTC---------VFHTLREGRYVRSLC---HPSGSALS 288
++ L I+ISGS+DGT V TL G RS C HP+G
Sbjct: 228 MSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG-LERSWCIATHPTGRKNY 286
Query: 289 KLAASRHGRIVL-YGDDD 305
+ +G VL G+D+
Sbjct: 287 IASGFDNGFTVLSLGNDE 304
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 151 CGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVW 203
C W+ + LN G + S H +SC+ +++DGS L TGS+D + +W
Sbjct: 322 CYVWDTLLAEMVLNLGTLQNS---HEGRISCLGLSSDGSALCTGSWDKNLKIW 371
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 61/265 (23%), Positives = 103/265 (38%), Gaps = 43/265 (16%)
Query: 155 ENSFQVIALNDGRVV----------QSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWE 204
E ++ V A DGR++ +I+ H V A +G +A G D+ ++
Sbjct: 77 EKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIF- 135
Query: 205 VIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIIT-CLYVSVELDIVISGSKDG 263
N+ +A R + V +L GH + C YV + +I+GS D
Sbjct: 136 ------------NLSSQADRDGNMPVS---RVLTGHKGYASSCQYVPDQETRLITGSGDQ 180
Query: 264 TCVFHTLREGRYVRSLC--HPSG---SALSKLAASRHGRIVLYGDDDLSLHLFSINGKHL 318
TCV + G+ + PSG LS S + + + G D ++ L+ +
Sbjct: 181 TCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSR 240
Query: 319 ASSESNGR---LNCLELSACGQFLVCGGDQGQ---IVVRSMNSLEVVRRYSGVGK----I 368
A +G +N ++ GQ G D G +R+ + L+V R I
Sbjct: 241 AVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPI 300
Query: 369 ITSLAVT-PEECFLAGTKDGCLLVY 392
+TS+A + AG +G V+
Sbjct: 301 VTSVAFSISGRLLFAGYSNGDCYVW 325
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 74/179 (41%), Gaps = 36/179 (20%)
Query: 177 DVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHI 236
DV+S + + ++ +GS DTTV +W++ R + VR +H
Sbjct: 207 DVLSLSINSLNANMFISGSCDTTVRLWDL---RITSRAVRT----------------YH- 246
Query: 237 LCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKL------ 290
GH+ I + + +GS DGTC +R G ++ ++L
Sbjct: 247 --GHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSV 304
Query: 291 AASRHGRIVLYGDDDLSLHLFS-------INGKHLASSESNGRLNCLELSACGQFLVCG 342
A S GR++ G + +++ +N L +S GR++CL LS+ G L G
Sbjct: 305 AFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSH-EGRISCLGLSSDGSALCTG 362
>pdb|1MI1|A Chain A, Crystal Structure Of The Ph-Beach Domain Of Human
Neurobeachin
pdb|1MI1|B Chain B, Crystal Structure Of The Ph-Beach Domain Of Human
Neurobeachin
Length = 414
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 3 DELQKSAIEDQIANFGQTPSQIFRKKHPRR 32
D + + A E QI NFGQTPSQ+ + HP R
Sbjct: 385 DPVLREAXEAQIQNFGQTPSQLLIEPHPPR 414
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 88/198 (44%), Gaps = 25/198 (12%)
Query: 149 ITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWE---- 204
+ G+ + + +V + G+ + + H V CV DG + +G+YD V VW+
Sbjct: 212 VVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETE 269
Query: 205 --VIRARAPEKRVRNMQIE-----APRKDYVI----VETP--FHILCGHDDIITCLYVSV 251
+ + RV ++Q + + D I VET H L GH + + + +
Sbjct: 270 TCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM--EL 327
Query: 252 ELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLF 311
+ +I++SG+ D T ++ G+ +++L P+ + + V+ DD ++ L+
Sbjct: 328 KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLW 387
Query: 312 SING----KHLASSESNG 325
+ ++L + ES G
Sbjct: 388 DLKTGEFIRNLVTLESGG 405
>pdb|1T77|A Chain A, Crystal Structure Of The Ph-Beach Domains Of Human LrbaBGL
pdb|1T77|B Chain B, Crystal Structure Of The Ph-Beach Domains Of Human LrbaBGL
pdb|1T77|C Chain C, Crystal Structure Of The Ph-Beach Domains Of Human LrbaBGL
pdb|1T77|D Chain D, Crystal Structure Of The Ph-Beach Domains Of Human LrbaBGL
Length = 414
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 3 DELQKSAIEDQIANFGQTPSQIFRKKHPRR 32
D + + A+E QI +FGQTPSQ+ + HP R
Sbjct: 385 DPVLREAVEAQIRSFGQTPSQLLIEPHPPR 414
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 82/182 (45%), Gaps = 23/182 (12%)
Query: 237 LCGHDDIITCLYVSVELDIVISGSKDGTC-VFHTLREGRYVRSLCHPSGSALSKLAASRH 295
L GH+ +T + + E D++ S SKD + V+++L G + +L +G+ S +
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLN-GERLGTLDGHTGTIWS-IDVDCF 85
Query: 296 GRIVLYGDDDLSLHLFSI-NGKHLASSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMN 354
+ + G D S+ L+ + NG+ +A+ +S + +E S CG + + D S+N
Sbjct: 86 TKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSIN 145
Query: 355 SLEVVRRYSG----------VGKIITSLAV---------TPEECFLAGTKDGCLLVYSIE 395
E+ R + + KIIT + T + +AG KDG + Y +
Sbjct: 146 IYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVS 205
Query: 396 NR 397
N
Sbjct: 206 NN 207
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 73/199 (36%), Gaps = 58/199 (29%)
Query: 148 LITCGNWENSFQVIALNDG--RVVQSIRQH-------RDVVSCVAVTTDGSILATGSYDT 198
+ITC +E+++ + +D RV SI + D G IL +GS D
Sbjct: 124 VITCLQFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDR 183
Query: 199 TVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDI--V 256
TV VW++ + H+ GH+ + CL + +I +
Sbjct: 184 TVRVWDIKKGCCT-----------------------HVFEGHNSTVRCLDIVEYKNIKYI 220
Query: 257 ISGSKDGT----------------------CVFHTLREGRYVRSLCHPSGSALSKLAASR 294
++GS+D T VFHT E Y + G S S
Sbjct: 221 VTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR--GHXASVRTVSG 278
Query: 295 HGRIVLYGDDDLSLHLFSI 313
HG IV+ G D +L ++ +
Sbjct: 279 HGNIVVSGSYDNTLIVWDV 297
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 38/100 (38%), Gaps = 23/100 (23%)
Query: 180 SCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCG 239
S V+ G+I+ +GSYD T++VW+V + + +IL G
Sbjct: 272 SVRTVSGHGNIVVSGSYDNTLIVWDVAQXKC-----------------------LYILSG 308
Query: 240 HDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSL 279
H D I E IS S D T L G +L
Sbjct: 309 HTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTL 348
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 137 FTTMQTPSENFLITCGNWENSFQVIALN-DGRVVQSIRQHRDVVSCVAVTTD-GSILATG 194
F ++ + + ++ G +N VI LN DG+ + ++R H+ V+ VA+ LAT
Sbjct: 213 FCSLDVSASSRMVVTG--DNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATA 270
Query: 195 SYDTTVMVWEVIRARA 210
S D TV +W++ + R
Sbjct: 271 SVDQTVKIWDLRQVRG 286
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 73/199 (36%), Gaps = 58/199 (29%)
Query: 148 LITCGNWENSFQVIALNDG--RVVQSIRQH-------RDVVSCVAVTTDGSILATGSYDT 198
+ITC +E+++ + +D RV SI + D G IL +GS D
Sbjct: 124 VITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDR 183
Query: 199 TVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDI--V 256
TV VW++ + H+ GH+ + CL + +I +
Sbjct: 184 TVRVWDIKKGCCT-----------------------HVFEGHNSTVRCLDIVEYKNIKYI 220
Query: 257 ISGSKDGT----------------------CVFHTLREGRYVRSLCHPSGSALSKLAASR 294
++GS+D T VFHT E Y + G S S
Sbjct: 221 VTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR--GHMASVRTVSG 278
Query: 295 HGRIVLYGDDDLSLHLFSI 313
HG IV+ G D +L ++ +
Sbjct: 279 HGNIVVSGSYDNTLIVWDV 297
Score = 34.7 bits (78), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 43/108 (39%), Gaps = 25/108 (23%)
Query: 172 IRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVE 231
+R H + S V+ G+I+ +GSYD T++VW+V + +
Sbjct: 266 LRGH--MASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKC--------------------- 302
Query: 232 TPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSL 279
+IL GH D I E IS S D T L G + +L
Sbjct: 303 --LYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL 348
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 35.0 bits (79), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 137 FTTMQTPSENFLITCGNWENSFQVIALN-DGRVVQSIRQHRDVVSCVAVTTD-GSILATG 194
F ++ + + ++ G +N VI LN DG+ + ++R H+ V+ VA+ LAT
Sbjct: 212 FCSLDVSASSRMVVTG--DNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATA 269
Query: 195 SYDTTVMVWEVIRARA 210
S D TV +W++ + R
Sbjct: 270 SVDQTVKIWDLRQVRG 285
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 35.0 bits (79), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 137 FTTMQTPSENFLITCGNWENSFQVIALN-DGRVVQSIRQHRDVVSCVAVTTD-GSILATG 194
F ++ + + ++ G +N VI LN DG+ + ++R H+ V+ VA+ LAT
Sbjct: 212 FCSLDVSASSRMVVTG--DNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATA 269
Query: 195 SYDTTVMVWEVIRARA 210
S D TV +W++ + R
Sbjct: 270 SVDQTVKIWDLRQVRG 285
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 35.0 bits (79), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
Query: 146 NFLITCGNWENSFQVIALND-GRVVQSIRQ-HRDVVSCVAVTTDGSILATGSYDTTVMVW 203
NFLI G+W N + + D G+ + +Q H V V + DGS + T S D T +W
Sbjct: 55 NFLIA-GSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW 113
Query: 204 EVIRARAPEKRVRNMQIEAPRKDYVIVETP 233
++ +A ++ Q +AP K ++ P
Sbjct: 114 DLSSNQA----IQIAQHDAPVKTIHWIKAP 139
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 164 NDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEV 205
+D V ++ H + V VA G++LAT S D +V VWEV
Sbjct: 93 DDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEV 134
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 134 SQCFTTMQTPSENFLITCGNWENSFQVIALN-DGRVVQSI--RQHRDVVSCVAVTTDGSI 190
S+C+ P+ L +CG + ++ D + +S+ H+ V VA + G+
Sbjct: 17 SRCWFLAWNPAGTLLASCGG-DRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNY 75
Query: 191 LATGSYDTTVMVWE 204
LA+ S+D T +W+
Sbjct: 76 LASASFDATTCIWK 89
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 77/213 (36%), Gaps = 52/213 (24%)
Query: 133 GSQCFTTMQ-----------TPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSC 181
G +C TM P+ + +++ + + ++ + G V++ HR+ V
Sbjct: 181 GFECIRTMHGHDHNVSSVSIMPNGDHIVSASR-DKTIKMWEVQTGYCVKTFTGHREWVRM 239
Query: 182 VAVTTDGSILATGSYDTTVMVWEVIRAR-APEKRVRNMQIE----APRKDYVIV------ 230
V DG+++A+ S D TV VW V E R +E AP Y +
Sbjct: 240 VRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGS 299
Query: 231 ET-------PFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPS 283
ET PF + D I VS G C+ + +VR + S
Sbjct: 300 ETKKSGKPGPFLLSGSRDKTIKMWDVST-----------GMCLMTLVGHDNWVRGVLFHS 348
Query: 284 GSALSKLAASRHGRIVLYGDDDLSLHLFSINGK 316
G G+ +L DD +L ++ K
Sbjct: 349 G-----------GKFILSCADDKTLRVWDYKNK 370
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 146 NFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWE 204
F+++C + + + +V + R ++++ H V+ + + TGS D TV VWE
Sbjct: 351 KFILSCAD-DKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 29/143 (20%), Positives = 57/143 (39%), Gaps = 32/143 (22%)
Query: 137 FTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSY 196
F+ M + SE+ I ++E G ++++ H D V ++ G +LA+ S
Sbjct: 120 FSVMVSASEDATIKVWDYET---------GDFERTLKGHTDSVQDISFDHSGKLLASCSA 170
Query: 197 DTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIV 256
D T+ +W+ +R M GHD ++ + + D +
Sbjct: 171 DMTIKLWDFQGFEC----IRTMH-------------------GHDHNVSSVSIMPNGDHI 207
Query: 257 ISGSKDGTCVFHTLREGRYVRSL 279
+S S+D T ++ G V++
Sbjct: 208 VSASRDKTIKMWEVQTGYCVKTF 230
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 148 LITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIR 207
L+ G+ +N+ ++ + G ++ + H ++V C+ D + +G+YD + VW+++
Sbjct: 308 LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVA 365
Query: 208 ARAPE 212
A P
Sbjct: 366 ALDPR 370
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 68/184 (36%), Gaps = 45/184 (24%)
Query: 109 FFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRV 168
F G GAD+L C + + N ++ G + V + G+
Sbjct: 192 FHGHGADVL------------------CLDLAPSETGNTFVS-GGCDKKAMVWDMRSGQC 232
Query: 169 VQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWE---------------VIRARAPEK 213
VQ+ H V+ V G A+GS D T +++ + A + +
Sbjct: 233 VQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDF 292
Query: 214 RVRNMQIEAPRKDY------VIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVF 267
+ + A DY V+ + IL GH++ ++ L VS + SGS D
Sbjct: 293 SLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWD----- 347
Query: 268 HTLR 271
HTLR
Sbjct: 348 HTLR 351
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 5/108 (4%)
Query: 96 SGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWE 155
SG F SGS D + D+ + R V ES G+ +++ L+ G +
Sbjct: 251 SGDAFA-SGSDDATCRL-YDLRADREVAIYSKESIIFGA---SSVDFSLSGRLLFAGYND 305
Query: 156 NSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVW 203
+ V + G V + H + VS + V+ DG+ +GS+D T+ VW
Sbjct: 306 YTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
>pdb|2JAJ|A Chain A, Ddah1 Complexed With L-257
pdb|2JAJ|B Chain B, Ddah1 Complexed With L-257
Length = 289
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 76/176 (43%), Gaps = 27/176 (15%)
Query: 86 VKMWLTTQLQSGGNFTFSGSQDPFFGV-------GADILSP--RNVGS---PLAESFELG 133
V+M GG+ F+G ++ F G+ GA+IL+ ++ P+A+ L
Sbjct: 121 VEMKDENATLDGGDVLFTG-REFFVGLSKRTNQRGAEILADTFKDYAVSTVPVADGLHLK 179
Query: 134 SQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILAT 193
S F +M P+ LI G+ E++ + + +++Q + HR +T I A
Sbjct: 180 S--FCSMAGPN---LIAIGSSESAQKAL-----KIMQQMSDHR----YDKLTVPDDIAAN 225
Query: 194 GSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYV 249
Y V+ R PE+ + ++ KD++++ L D ++TC V
Sbjct: 226 CIYLNIPNKGHVLLHRTPEEYPESAKVYEKLKDHMLIPVSMSELEKVDGLLTCCSV 281
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 175 HRDVVSCVAVTTDGSILATGSYDTTVMVWEV 205
H V+CV+ + D LATGS D +V+VW +
Sbjct: 535 HTAKVACVSWSPDNVRLATGSLDNSVIVWNM 565
>pdb|3I2E|A Chain A, Crystal Structure Of Human Dimethylarginine
Dymethylaminohydrolase-1 (Ddah-1)
pdb|3I2E|B Chain B, Crystal Structure Of Human Dimethylarginine
Dymethylaminohydrolase-1 (Ddah-1)
pdb|3I4A|A Chain A, Crystal Structure Of Dimethylarginine
Dimethylaminohydrolase-1 (Ddah-1) In Complex With N5-(1-
Iminopropyl)-L-Ornithine
pdb|3I4A|B Chain B, Crystal Structure Of Dimethylarginine
Dimethylaminohydrolase-1 (Ddah-1) In Complex With N5-(1-
Iminopropyl)-L-Ornithine
pdb|3P8E|A Chain A, Crystal Structure Of Human Dimethylarginine
Dimethylaminohydrolase-1 (Ddah-1) Covalently Bound With
N5-(1-Iminopentyl)-L-Ornithine
pdb|3P8E|B Chain B, Crystal Structure Of Human Dimethylarginine
Dimethylaminohydrolase-1 (Ddah-1) Covalently Bound With
N5-(1-Iminopentyl)-L-Ornithine
Length = 308
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 76/176 (43%), Gaps = 27/176 (15%)
Query: 86 VKMWLTTQLQSGGNFTFSGSQDPFFGV-------GADILSPR----NVGS-PLAESFELG 133
V+M GG+ F+G ++ F G+ GA+IL+ V + P+A+ L
Sbjct: 140 VEMKDENATLDGGDVLFTG-REFFVGLSKRTNQRGAEILADTFKDYAVSTVPVADGLHLK 198
Query: 134 SQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILAT 193
S F +M P+ LI G+ E++ + + +++Q + HR +T I A
Sbjct: 199 S--FCSMAGPN---LIAIGSSESAQKAL-----KIMQQMSDHR----YDKLTVPDDIAAN 244
Query: 194 GSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYV 249
Y V+ R PE+ + ++ KD++++ L D ++TC V
Sbjct: 245 CIYLNIPNKGHVLLHRTPEEYPESAKVYEKLKDHMLIPVSMSELEKVDGLLTCCSV 300
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 172 IRQHRDVVSCVAVTTDGSILATGSYDTTVMVWE 204
I H + V VA + DG LAT S D +V +WE
Sbjct: 103 IEGHENEVKGVAWSNDGYYLATCSRDKSVWIWE 135
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 175 HRDVVSCVAVTTDGSILATGSYDTTVMVW 203
H+ + VA S+LA GS+D+TV +W
Sbjct: 57 HKKAIRSVAWRPHTSLLAAGSFDSTVSIW 85
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 11/73 (15%)
Query: 174 QHRDVVSCVAVTTDGSILATGSYDTTVMVWE-----VIRARAPEKRVRNMQIEAPRKDYV 228
+H D+V ++V +DG+ +G D +V VW+ V+++ N P KD +
Sbjct: 137 EHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTI 196
Query: 229 IVETPFHILCGHD 241
+ CG D
Sbjct: 197 FLS------CGED 203
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 174 QHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARA-PEKRVRNMQI----EAPRKDYV 228
+H D+VS V+V + G+ +GS D + VW++ + R Q+ +P KD V
Sbjct: 125 EHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSV 184
Query: 229 IV 230
+
Sbjct: 185 FL 186
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 53/261 (20%), Positives = 92/261 (35%), Gaps = 68/261 (26%)
Query: 166 GRVVQSIRQHRDVVSCVAVTTD----GSILATGSYDTTVMVWEVIRARAPEKRVRNMQIE 221
G + + + H D + VA T+ + TGS D V VW + R+ +++
Sbjct: 22 GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVW----------KWRDERLD 71
Query: 222 APRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCH 281
L GH + + +S L I S S D L G+ ++S+
Sbjct: 72 LQWS-----------LEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDA 120
Query: 282 PSGSALS--------KLAASRH-GRIVLYG----DDDLSLHL---------FSINGKHLA 319
A + LA H G++ ++G + SL +S +GK+LA
Sbjct: 121 GPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLA 180
Query: 320 SSESNGRLNCLEL---------------------SACGQFLVCGGDQGQIVVRSMNSLEV 358
S +G +N ++ S Q LV D G I + + +
Sbjct: 181 SGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANL 240
Query: 359 VRRYSGVGKIITSLAVTPEEC 379
SG + ++A P++
Sbjct: 241 AGTLSGHASWVLNVAFCPDDT 261
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 127 AESFELGSQCFTTMQTP--SENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAV 184
A+ F ++ +P +++ L+ G Q+ L G ++ HR + V+
Sbjct: 135 ADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSW 194
Query: 185 TTD-GSILATGSYDTTVMVWEVIRA 208
+ ILAT S D+ V +W+V RA
Sbjct: 195 SPRYDYILATASADSRVKLWDVRRA 219
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 164 NDGRVVQSIRQHRDVVSCVAVTTDGS-ILATGSYDTTVMVWEV 205
N + S+ H V+C++ ILATGS D TV +W++
Sbjct: 261 NTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL 303
>pdb|1Y8N|A Chain A, Crystal Structure Of The Pdk3-L2 Complex
pdb|1Y8O|A Chain A, Crystal Structure Of The Pdk3-L2 Complex
pdb|1Y8P|A Chain A, Crystal Structure Of The Pdk3-L2 Complex
pdb|2Q8I|A Chain A, Pyruvate Dehydrogenase Kinase Isoform 3 In Complex With
Antitumor Drug Radicicol
pdb|2PNR|A Chain A, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
pdb|2PNR|B Chain B, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
pdb|2PNR|E Chain E, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
pdb|2PNR|F Chain F, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
Length = 419
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 27/63 (42%)
Query: 175 HRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPF 234
H + + T + + + +Y+T M+ E APE V +AP K +V P
Sbjct: 193 HPKHIGSIDPTCNVADVVKDAYETAKMLCEQYYLVAPELEVEEFNAKAPDKPIQVVYVPS 252
Query: 235 HIL 237
H+
Sbjct: 253 HLF 255
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 26/47 (55%)
Query: 158 FQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWE 204
++ ++ DG +++ HR V+ +A+ G + + S D T+ +WE
Sbjct: 163 LKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE 209
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 26/47 (55%)
Query: 158 FQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWE 204
++ ++ DG +++ HR V+ +A+ G + + S D T+ +WE
Sbjct: 160 LKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE 206
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,193,958
Number of Sequences: 62578
Number of extensions: 498076
Number of successful extensions: 1474
Number of sequences better than 100.0: 74
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1072
Number of HSP's gapped (non-prelim): 224
length of query: 413
length of database: 14,973,337
effective HSP length: 101
effective length of query: 312
effective length of database: 8,652,959
effective search space: 2699723208
effective search space used: 2699723208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)