Query 040361
Match_columns 413
No_of_seqs 673 out of 4619
Neff 11.4
Searched_HMMs 46136
Date Fri Mar 29 07:42:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040361.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040361hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 6.8E-47 1.5E-51 308.8 26.9 313 52-393 116-479 (480)
2 KOG0271 Notchless-like WD40 re 100.0 3E-47 6.5E-52 310.8 22.9 281 90-401 119-445 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 2.3E-47 4.9E-52 315.2 19.4 275 90-393 179-458 (459)
4 KOG0286 G-protein beta subunit 100.0 2.8E-41 6.2E-46 266.6 28.8 271 92-393 61-343 (343)
5 KOG0318 WD40 repeat stress pro 100.0 6.7E-40 1.5E-44 278.3 35.6 354 53-412 61-577 (603)
6 KOG0315 G-protein beta subunit 100.0 8.2E-41 1.8E-45 258.2 26.8 243 133-401 40-294 (311)
7 KOG0272 U4/U6 small nuclear ri 100.0 3.3E-42 7.2E-47 284.7 20.1 254 132-411 174-433 (459)
8 KOG0279 G protein beta subunit 100.0 1.7E-40 3.7E-45 260.6 28.6 271 99-396 29-314 (315)
9 KOG0286 G-protein beta subunit 100.0 1.1E-39 2.3E-44 257.8 28.3 275 53-352 57-343 (343)
10 KOG0279 G protein beta subunit 100.0 2.2E-39 4.8E-44 254.4 29.4 247 131-402 13-269 (315)
11 KOG0263 Transcription initiati 100.0 1.1E-38 2.3E-43 283.9 23.8 243 133-400 378-654 (707)
12 KOG0291 WD40-repeat-containing 100.0 1E-36 2.2E-41 269.5 34.0 330 52-411 266-628 (893)
13 KOG0284 Polyadenylation factor 100.0 5.2E-39 1.1E-43 264.8 15.9 274 92-396 102-381 (464)
14 KOG0291 WD40-repeat-containing 100.0 7.4E-36 1.6E-40 264.0 34.3 318 53-400 191-555 (893)
15 KOG0318 WD40 repeat stress pro 100.0 6E-35 1.3E-39 248.3 36.7 340 53-395 149-602 (603)
16 KOG0645 WD40 repeat protein [G 100.0 1.3E-35 2.9E-40 232.2 28.2 279 87-395 16-311 (312)
17 KOG0295 WD40 repeat-containing 100.0 1.6E-36 3.4E-41 246.7 23.8 280 94-401 72-370 (406)
18 KOG0273 Beta-transducin family 100.0 2.5E-36 5.5E-41 253.3 25.2 283 91-400 183-487 (524)
19 KOG0266 WD40 repeat-containing 100.0 7E-36 1.5E-40 272.4 30.0 277 92-395 165-454 (456)
20 KOG0293 WD40 repeat-containing 100.0 7.4E-37 1.6E-41 252.5 20.6 277 92-397 230-515 (519)
21 KOG0263 Transcription initiati 100.0 3.9E-36 8.6E-41 267.6 25.8 202 129-355 447-650 (707)
22 KOG0265 U5 snRNP-specific prot 100.0 1.9E-35 4.1E-40 234.6 25.2 275 90-394 51-337 (338)
23 KOG0273 Beta-transducin family 100.0 9.8E-35 2.1E-39 243.8 30.5 270 93-395 242-523 (524)
24 KOG0284 Polyadenylation factor 100.0 4.5E-37 9.8E-42 253.4 15.4 252 133-410 96-352 (464)
25 KOG0315 G-protein beta subunit 100.0 7.6E-35 1.7E-39 225.3 26.4 230 144-397 8-247 (311)
26 KOG0282 mRNA splicing factor [ 100.0 2.1E-36 4.6E-41 254.6 18.5 273 92-393 220-503 (503)
27 KOG0285 Pleiotropic regulator 100.0 2.1E-35 4.6E-40 239.7 23.6 242 132-399 150-393 (460)
28 KOG0296 Angio-associated migra 100.0 1.5E-34 3.2E-39 235.3 27.4 314 52-395 65-398 (399)
29 KOG0278 Serine/threonine kinas 100.0 1.2E-35 2.6E-40 229.9 19.7 276 93-400 24-302 (334)
30 KOG0316 Conserved WD40 repeat- 100.0 5.7E-35 1.2E-39 224.2 22.4 245 133-404 17-266 (307)
31 KOG0275 Conserved WD40 repeat- 100.0 3.4E-36 7.4E-41 241.6 16.1 279 91-393 218-507 (508)
32 KOG0295 WD40 repeat-containing 100.0 4.1E-35 8.9E-40 238.5 21.0 271 94-394 116-405 (406)
33 KOG0319 WD40-repeat-containing 100.0 7.6E-34 1.6E-38 250.8 29.0 250 133-402 323-584 (775)
34 KOG0266 WD40 repeat-containing 100.0 5.5E-34 1.2E-38 260.0 29.2 244 133-400 159-414 (456)
35 cd00200 WD40 WD40 domain, foun 100.0 2.4E-33 5.1E-38 243.9 32.1 271 93-393 16-289 (289)
36 PLN00181 protein SPA1-RELATED; 100.0 2E-33 4.4E-38 275.1 34.5 277 92-394 489-792 (793)
37 KOG0285 Pleiotropic regulator 100.0 5E-34 1.1E-38 231.8 23.9 275 91-398 156-442 (460)
38 KOG0316 Conserved WD40 repeat- 100.0 9.1E-34 2E-38 217.6 23.5 270 93-395 24-299 (307)
39 KOG0265 U5 snRNP-specific prot 100.0 8.7E-34 1.9E-38 225.2 23.6 254 122-401 36-302 (338)
40 KOG0281 Beta-TrCP (transducin 100.0 1E-34 2.2E-39 235.1 15.2 266 97-400 206-482 (499)
41 KOG0313 Microtubule binding pr 100.0 4.8E-33 1E-37 227.7 23.3 289 98-395 115-418 (423)
42 KOG0292 Vesicle coat complex C 100.0 1.6E-32 3.4E-37 247.1 27.1 252 123-399 41-325 (1202)
43 KOG0276 Vesicle coat complex C 100.0 6.3E-32 1.4E-36 234.5 26.6 278 55-397 17-300 (794)
44 KOG0319 WD40-repeat-containing 100.0 4.1E-32 9E-37 239.9 25.9 309 65-396 295-620 (775)
45 KOG0281 Beta-TrCP (transducin 100.0 3.3E-34 7.2E-39 232.1 11.3 231 134-400 198-433 (499)
46 cd00200 WD40 WD40 domain, foun 100.0 7.2E-31 1.6E-35 228.2 32.4 245 131-400 7-254 (289)
47 KOG0296 Angio-associated migra 100.0 1.5E-31 3.3E-36 217.9 25.3 281 92-402 70-363 (399)
48 KOG0305 Anaphase promoting com 100.0 8.9E-31 1.9E-35 229.4 29.8 240 133-398 217-464 (484)
49 KOG1446 Histone H3 (Lys4) meth 100.0 4.2E-30 9.2E-35 206.2 30.5 242 133-401 14-268 (311)
50 KOG0292 Vesicle coat complex C 100.0 9.9E-32 2.1E-36 241.9 22.3 245 134-403 10-288 (1202)
51 KOG0288 WD40 repeat protein Ti 100.0 5.7E-32 1.2E-36 223.7 18.6 268 94-393 183-459 (459)
52 KOG0645 WD40 repeat protein [G 100.0 6.5E-30 1.4E-34 200.4 29.1 237 133-396 14-262 (312)
53 KOG0276 Vesicle coat complex C 100.0 3.3E-31 7.2E-36 230.1 24.0 243 133-400 13-262 (794)
54 KOG0277 Peroxisomal targeting 100.0 1.2E-31 2.6E-36 208.2 18.3 242 129-394 56-308 (311)
55 KOG0643 Translation initiation 100.0 2.8E-30 6.1E-35 202.1 25.0 264 132-396 9-318 (327)
56 PLN00181 protein SPA1-RELATED; 100.0 6.4E-30 1.4E-34 250.5 33.9 240 131-398 481-741 (793)
57 KOG0772 Uncharacterized conser 100.0 7.3E-31 1.6E-35 223.1 22.9 290 86-393 167-485 (641)
58 KOG0306 WD40-repeat-containing 100.0 1.7E-30 3.6E-35 230.2 25.1 283 93-396 380-665 (888)
59 KOG0310 Conserved WD40 repeat- 100.0 1.3E-30 2.8E-35 220.2 23.3 240 130-397 65-311 (487)
60 PTZ00421 coronin; Provisional 100.0 1.2E-29 2.5E-34 230.6 31.2 224 130-377 72-314 (493)
61 KOG0274 Cdc4 and related F-box 100.0 2.7E-30 5.9E-35 234.9 27.1 267 98-401 218-488 (537)
62 KOG0647 mRNA export protein (c 100.0 2.6E-30 5.7E-35 205.7 22.9 238 133-398 27-284 (347)
63 KOG0283 WD40 repeat-containing 100.0 8.8E-31 1.9E-35 235.5 22.7 240 131-398 265-579 (712)
64 KOG0282 mRNA splicing factor [ 100.0 6.4E-32 1.4E-36 227.8 14.4 245 131-400 212-467 (503)
65 KOG1408 WD40 repeat protein [F 100.0 3.2E-30 6.9E-35 227.3 25.5 319 54-396 327-714 (1080)
66 KOG0313 Microtubule binding pr 100.0 4.3E-30 9.4E-35 210.5 23.7 243 146-410 115-391 (423)
67 KOG1407 WD40 repeat protein [F 100.0 1.6E-29 3.5E-34 197.2 25.4 274 92-395 26-311 (313)
68 PTZ00421 coronin; Provisional 100.0 6.9E-29 1.5E-33 225.6 33.4 214 171-401 70-296 (493)
69 KOG0973 Histone transcription 100.0 7E-30 1.5E-34 235.6 25.4 282 93-398 20-358 (942)
70 KOG0294 WD40 repeat-containing 100.0 1.4E-29 3E-34 202.7 23.5 240 133-402 43-288 (362)
71 PTZ00420 coronin; Provisional 100.0 1.3E-28 2.8E-33 224.8 33.1 230 152-398 50-296 (568)
72 KOG1446 Histone H3 (Lys4) meth 100.0 2.7E-28 5.9E-33 195.9 29.7 275 93-398 21-306 (311)
73 KOG0275 Conserved WD40 repeat- 100.0 2.5E-30 5.4E-35 208.0 18.0 248 133-406 213-478 (508)
74 KOG0293 WD40 repeat-containing 100.0 7.5E-30 1.6E-34 211.2 21.3 247 131-402 222-477 (519)
75 KOG0277 Peroxisomal targeting 100.0 1.5E-29 3.2E-34 196.7 21.1 226 155-403 37-273 (311)
76 KOG0640 mRNA cleavage stimulat 100.0 3.3E-30 7.2E-35 205.9 17.6 284 91-395 117-426 (430)
77 KOG0301 Phospholipase A2-activ 100.0 3.5E-29 7.6E-34 220.0 24.8 263 98-397 25-290 (745)
78 KOG0283 WD40 repeat-containing 100.0 2.7E-29 5.9E-34 226.0 22.8 232 168-402 258-539 (712)
79 KOG0310 Conserved WD40 repeat- 100.0 8E-29 1.7E-33 209.4 22.2 243 132-400 25-273 (487)
80 PTZ00420 coronin; Provisional 100.0 7E-28 1.5E-32 220.0 29.9 246 103-378 49-318 (568)
81 KOG0288 WD40 repeat protein Ti 100.0 7.5E-30 1.6E-34 211.2 14.5 247 133-407 175-429 (459)
82 KOG0264 Nucleosome remodeling 100.0 1.1E-28 2.4E-33 206.9 21.7 252 128-396 119-405 (422)
83 KOG0641 WD40 repeat protein [G 100.0 7.3E-27 1.6E-31 178.9 29.0 279 92-395 38-349 (350)
84 KOG0306 WD40-repeat-containing 100.0 1.1E-27 2.4E-32 212.5 28.2 243 130-401 370-628 (888)
85 KOG1407 WD40 repeat protein [F 100.0 4.8E-28 1E-32 189.0 22.6 245 130-401 17-267 (313)
86 KOG0289 mRNA splicing factor [ 100.0 9.3E-28 2E-32 200.1 25.1 270 95-394 228-505 (506)
87 KOG0640 mRNA cleavage stimulat 100.0 7.2E-29 1.6E-33 198.3 16.7 226 170-400 106-340 (430)
88 KOG0646 WD40 repeat protein [G 100.0 3.4E-28 7.5E-33 204.5 21.4 251 128-395 76-350 (476)
89 KOG0308 Conserved WD40 repeat- 100.0 9.3E-29 2E-33 215.9 18.2 233 143-397 35-287 (735)
90 KOG0299 U3 snoRNP-associated p 100.0 1.1E-27 2.3E-32 201.2 23.7 236 131-394 200-455 (479)
91 KOG0308 Conserved WD40 repeat- 100.0 1.5E-28 3.2E-33 214.6 19.0 287 95-396 34-328 (735)
92 KOG0289 mRNA splicing factor [ 100.0 1.8E-27 3.8E-32 198.5 23.7 234 136-393 222-460 (506)
93 KOG0268 Sof1-like rRNA process 100.0 1E-28 2.2E-33 201.4 14.9 261 134-398 67-348 (433)
94 KOG0278 Serine/threonine kinas 100.0 1E-27 2.3E-32 186.0 19.7 279 45-358 11-301 (334)
95 KOG1036 Mitotic spindle checkp 100.0 4.8E-27 1E-31 187.8 23.9 239 133-402 13-269 (323)
96 KOG0299 U3 snoRNP-associated p 100.0 2.2E-27 4.7E-32 199.4 22.7 248 127-400 136-415 (479)
97 KOG0274 Cdc4 and related F-box 100.0 2E-27 4.3E-32 216.3 23.9 226 148-403 220-449 (537)
98 KOG0973 Histone transcription 100.0 6.3E-27 1.4E-31 216.2 26.8 262 134-402 14-319 (942)
99 KOG0647 mRNA export protein (c 100.0 5.6E-27 1.2E-31 186.8 22.6 260 92-382 33-309 (347)
100 KOG0639 Transducin-like enhanc 100.0 1.3E-27 2.7E-32 202.9 18.7 274 93-394 426-703 (705)
101 KOG1539 WD repeat protein [Gen 100.0 1.8E-25 3.8E-30 200.8 30.0 332 63-400 172-611 (910)
102 KOG0300 WD40 repeat-containing 100.0 1.6E-26 3.6E-31 185.6 20.8 265 132-400 147-433 (481)
103 KOG2096 WD40 repeat protein [G 100.0 4.1E-26 9E-31 183.3 22.8 277 92-395 92-402 (420)
104 KOG0305 Anaphase promoting com 100.0 5.4E-26 1.2E-30 199.5 25.6 262 62-356 187-463 (484)
105 KOG1036 Mitotic spindle checkp 100.0 6.8E-26 1.5E-30 181.3 23.4 255 93-382 20-290 (323)
106 KOG0643 Translation initiation 100.0 5.6E-26 1.2E-30 178.1 22.2 205 171-400 5-225 (327)
107 KOG0641 WD40 repeat protein [G 100.0 3.8E-25 8.3E-30 169.5 26.1 277 53-354 34-349 (350)
108 KOG0646 WD40 repeat protein [G 99.9 7.3E-26 1.6E-30 190.6 22.2 231 145-399 50-311 (476)
109 KOG0321 WD40 repeat-containing 99.9 1E-25 2.2E-30 196.6 22.5 297 100-398 66-394 (720)
110 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 6.4E-24 1.4E-28 186.3 33.0 270 99-402 2-286 (300)
111 KOG1274 WD40 repeat protein [G 99.9 4.4E-25 9.5E-30 200.4 25.4 254 93-381 20-285 (933)
112 KOG0269 WD40 repeat-containing 99.9 1.4E-26 3.1E-31 206.2 14.8 243 133-399 87-344 (839)
113 KOG0300 WD40 repeat-containing 99.9 3.1E-25 6.6E-30 178.3 20.9 279 87-398 150-479 (481)
114 KOG1332 Vesicle coat complex C 99.9 1.6E-25 3.5E-30 173.3 17.8 236 139-396 17-287 (299)
115 KOG0639 Transducin-like enhanc 99.9 1.7E-25 3.6E-30 190.2 19.5 233 91-353 470-703 (705)
116 KOG0267 Microtubule severing p 99.9 9.9E-27 2.2E-31 205.6 12.3 222 145-390 39-262 (825)
117 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 3.4E-23 7.4E-28 181.7 34.4 281 64-376 2-300 (300)
118 KOG1273 WD40 repeat protein [G 99.9 1.8E-24 3.9E-29 173.6 23.2 268 128-397 19-324 (405)
119 KOG4283 Transcription-coupled 99.9 2.8E-24 6.1E-29 171.0 23.8 279 98-402 56-371 (397)
120 KOG2106 Uncharacterized conser 99.9 6.7E-23 1.5E-27 174.5 33.0 264 105-403 177-485 (626)
121 KOG0264 Nucleosome remodeling 99.9 7.4E-25 1.6E-29 184.1 21.0 240 94-355 132-405 (422)
122 KOG0294 WD40 repeat-containing 99.9 2.5E-24 5.5E-29 172.8 23.1 234 149-411 4-252 (362)
123 KOG0268 Sof1-like rRNA process 99.9 5.8E-26 1.3E-30 185.4 13.0 277 49-359 64-350 (433)
124 KOG0269 WD40 repeat-containing 99.9 1.8E-25 4E-30 199.2 17.3 254 136-413 42-314 (839)
125 KOG2055 WD40 repeat protein [G 99.9 2.5E-24 5.4E-29 181.2 23.1 277 91-395 218-512 (514)
126 KOG4378 Nuclear protein COP1 [ 99.9 1.1E-24 2.3E-29 185.1 20.8 289 67-382 6-309 (673)
127 KOG0772 Uncharacterized conser 99.9 1.4E-24 3.1E-29 185.0 21.1 268 65-352 170-485 (641)
128 KOG0267 Microtubule severing p 99.9 1.2E-26 2.5E-31 205.2 8.7 216 152-397 10-228 (825)
129 KOG1274 WD40 repeat protein [G 99.9 5.5E-24 1.2E-28 193.3 26.0 238 133-397 13-264 (933)
130 KOG2106 Uncharacterized conser 99.9 3E-22 6.5E-27 170.6 34.6 254 134-395 247-521 (626)
131 KOG1539 WD repeat protein [Gen 99.9 2.7E-23 5.9E-28 186.9 28.1 307 62-396 256-649 (910)
132 KOG0302 Ribosome Assembly prot 99.9 1.4E-23 3.1E-28 172.3 21.6 244 129-393 147-436 (440)
133 KOG1408 WD40 repeat protein [F 99.9 2.5E-23 5.4E-28 184.2 23.9 325 59-413 266-688 (1080)
134 KOG2445 Nuclear pore complex c 99.9 1.6E-22 3.4E-27 162.1 25.7 247 133-395 13-318 (361)
135 KOG0301 Phospholipase A2-activ 99.9 9.5E-24 2.1E-28 186.1 20.6 219 148-396 27-250 (745)
136 KOG4378 Nuclear protein COP1 [ 99.9 1.6E-23 3.4E-28 178.0 20.6 251 136-412 37-297 (673)
137 KOG4283 Transcription-coupled 99.9 2.3E-23 5E-28 165.8 18.9 219 172-402 39-283 (397)
138 KOG1332 Vesicle coat complex C 99.9 9.7E-24 2.1E-28 163.6 16.2 236 95-354 20-286 (299)
139 KOG2048 WD40 repeat protein [G 99.9 1.3E-21 2.8E-26 172.4 28.7 241 133-399 25-279 (691)
140 KOG2919 Guanine nucleotide-bin 99.9 2.1E-22 4.6E-27 162.4 21.7 286 87-390 50-364 (406)
141 KOG0307 Vesicle coat complex C 99.9 8E-24 1.7E-28 196.9 15.2 245 133-398 64-330 (1049)
142 KOG0270 WD40 repeat-containing 99.9 1.1E-22 2.4E-27 170.6 19.7 229 147-400 193-454 (463)
143 KOG2096 WD40 repeat protein [G 99.9 8.3E-22 1.8E-26 158.7 23.6 258 130-401 83-366 (420)
144 KOG1063 RNA polymerase II elon 99.9 7.5E-22 1.6E-26 174.3 24.7 335 55-395 271-699 (764)
145 KOG1034 Transcriptional repres 99.9 9E-22 2E-26 159.1 23.0 234 137-395 93-383 (385)
146 KOG1063 RNA polymerase II elon 99.9 4.9E-22 1.1E-26 175.4 23.2 279 94-397 275-650 (764)
147 KOG0302 Ribosome Assembly prot 99.9 2.4E-22 5.1E-27 165.2 19.6 217 174-398 149-381 (440)
148 KOG0270 WD40 repeat-containing 99.9 1.9E-22 4.2E-27 169.2 18.4 240 96-359 190-454 (463)
149 KOG1538 Uncharacterized conser 99.9 2.5E-21 5.4E-26 170.5 25.0 257 135-396 14-294 (1081)
150 KOG2055 WD40 repeat protein [G 99.9 7.4E-22 1.6E-26 166.4 20.8 241 133-397 213-469 (514)
151 KOG4328 WD40 protein [Function 99.9 8.7E-22 1.9E-26 165.8 20.5 246 133-401 186-456 (498)
152 KOG1273 WD40 repeat protein [G 99.9 1.4E-21 3E-26 157.2 19.6 193 179-396 26-227 (405)
153 KOG2048 WD40 repeat protein [G 99.9 1.3E-20 2.9E-25 166.1 25.3 239 133-396 69-320 (691)
154 KOG1188 WD40 repeat protein [G 99.9 1.7E-21 3.6E-26 158.4 16.6 188 147-355 41-243 (376)
155 KOG0321 WD40 repeat-containing 99.9 4E-21 8.6E-26 168.3 19.5 245 142-409 60-361 (720)
156 KOG4328 WD40 protein [Function 99.9 7E-21 1.5E-25 160.4 19.5 281 93-396 193-496 (498)
157 KOG2445 Nuclear pore complex c 99.9 9.8E-20 2.1E-24 146.2 23.9 205 173-398 10-259 (361)
158 KOG1009 Chromatin assembly com 99.9 2.3E-20 4.9E-25 155.1 20.1 259 133-399 13-376 (434)
159 KOG0303 Actin-binding protein 99.9 1E-19 2.3E-24 150.7 23.3 210 124-357 72-297 (472)
160 KOG0642 Cell-cycle nuclear pro 99.9 4.8E-21 1E-25 165.5 15.4 254 133-400 293-566 (577)
161 KOG0649 WD40 repeat protein [G 99.9 8.2E-19 1.8E-23 136.4 25.1 268 93-393 17-314 (325)
162 KOG0322 G-protein beta subunit 99.9 2.8E-20 6.1E-25 146.1 16.6 260 132-394 13-322 (323)
163 COG2319 FOG: WD40 repeat [Gene 99.9 4.3E-18 9.4E-23 156.9 33.6 278 92-398 71-362 (466)
164 KOG1007 WD repeat protein TSSC 99.9 1.2E-19 2.5E-24 144.5 19.3 245 132-395 62-361 (370)
165 KOG0303 Actin-binding protein 99.9 8.9E-20 1.9E-24 151.1 18.6 210 171-399 76-298 (472)
166 KOG0650 WD40 repeat nucleolar 99.9 7.1E-20 1.5E-24 159.4 18.9 268 94-392 408-732 (733)
167 KOG2919 Guanine nucleotide-bin 99.8 4.4E-19 9.5E-24 143.4 21.3 228 93-345 118-361 (406)
168 PRK11028 6-phosphogluconolacto 99.8 3.7E-18 8.1E-23 151.2 28.9 242 133-396 34-305 (330)
169 KOG0650 WD40 repeat nucleolar 99.8 3.9E-19 8.5E-24 154.8 20.6 259 131-394 398-679 (733)
170 KOG1034 Transcriptional repres 99.8 4.6E-20 9.9E-25 149.3 12.9 284 63-354 54-383 (385)
171 KOG0771 Prolactin regulatory e 99.8 2.6E-19 5.5E-24 149.9 16.7 193 180-396 148-355 (398)
172 KOG0649 WD40 repeat protein [G 99.8 6.9E-18 1.5E-22 131.3 22.4 244 133-396 10-275 (325)
173 COG2319 FOG: WD40 repeat [Gene 99.8 5.2E-16 1.1E-20 143.0 37.3 317 53-400 67-405 (466)
174 KOG1517 Guanine nucleotide bin 99.8 4E-18 8.6E-23 157.8 21.8 277 58-356 1071-1383(1387)
175 KOG0307 Vesicle coat complex C 99.8 3.1E-19 6.7E-24 166.7 14.4 234 100-357 82-330 (1049)
176 KOG1523 Actin-related protein 99.8 1.5E-17 3.2E-22 134.6 21.3 239 133-392 10-275 (361)
177 KOG0290 Conserved WD40 repeat- 99.8 1.1E-17 2.4E-22 133.5 20.3 247 135-397 46-320 (364)
178 KOG0644 Uncharacterized conser 99.8 1E-19 2.2E-24 164.2 9.5 247 129-407 186-438 (1113)
179 KOG4227 WD40 repeat protein [G 99.8 1.1E-17 2.4E-22 138.9 20.1 286 88-395 58-387 (609)
180 KOG1524 WD40 repeat-containing 99.8 1.2E-17 2.6E-22 143.9 20.8 205 146-392 76-283 (737)
181 KOG1587 Cytoplasmic dynein int 99.8 1.1E-17 2.4E-22 151.8 21.7 257 129-397 238-518 (555)
182 KOG1445 Tumor-specific antigen 99.8 2.9E-18 6.2E-23 150.6 16.4 229 155-400 602-849 (1012)
183 KOG0290 Conserved WD40 repeat- 99.8 7.1E-17 1.5E-21 128.9 22.5 240 130-392 93-362 (364)
184 KOG1007 WD repeat protein TSSC 99.8 4.2E-17 9E-22 130.1 20.2 229 154-398 38-292 (370)
185 KOG4497 Uncharacterized conser 99.8 5E-17 1.1E-21 132.0 20.4 287 91-397 13-393 (447)
186 KOG1009 Chromatin assembly com 99.8 8.4E-18 1.8E-22 140.0 16.3 236 100-359 28-377 (434)
187 PRK11028 6-phosphogluconolacto 99.8 5.4E-16 1.2E-20 137.4 28.4 264 70-354 9-304 (330)
188 KOG1963 WD40 repeat protein [G 99.8 1.3E-15 2.9E-20 139.0 31.1 240 133-397 205-540 (792)
189 KOG1188 WD40 repeat protein [G 99.8 2E-17 4.3E-22 134.9 17.3 189 189-401 41-248 (376)
190 PRK01742 tolB translocation pr 99.8 4.7E-17 1E-21 148.6 22.1 213 133-377 203-426 (429)
191 PRK01742 tolB translocation pr 99.8 1.2E-16 2.5E-21 146.0 24.6 210 155-396 183-402 (429)
192 KOG1517 Guanine nucleotide bin 99.8 1E-16 2.2E-21 148.7 22.9 250 136-398 1067-1336(1387)
193 KOG2110 Uncharacterized conser 99.8 1.5E-15 3.2E-20 125.4 25.8 162 129-317 83-251 (391)
194 KOG1523 Actin-related protein 99.8 1.2E-16 2.6E-21 129.3 18.7 203 175-398 9-239 (361)
195 KOG1445 Tumor-specific antigen 99.8 1.4E-17 2.9E-22 146.4 14.2 239 94-356 587-846 (1012)
196 KOG2110 Uncharacterized conser 99.8 2E-15 4.3E-20 124.7 25.9 226 143-398 14-251 (391)
197 KOG0642 Cell-cycle nuclear pro 99.8 4.3E-17 9.3E-22 141.4 16.1 251 93-366 301-573 (577)
198 KOG0771 Prolactin regulatory e 99.8 4.2E-17 9.1E-22 136.8 15.5 193 137-354 148-354 (398)
199 KOG1524 WD40 repeat-containing 99.7 3.4E-16 7.5E-21 135.1 21.1 242 22-310 35-282 (737)
200 KOG1963 WD40 repeat protein [G 99.7 4.8E-16 1E-20 141.8 23.1 263 139-404 22-384 (792)
201 KOG1272 WD40-repeat-containing 99.7 7.1E-18 1.5E-22 142.8 9.9 229 135-394 131-361 (545)
202 KOG4227 WD40 repeat protein [G 99.7 5.1E-16 1.1E-20 129.1 20.4 241 130-396 53-323 (609)
203 KOG1587 Cytoplasmic dynein int 99.7 5.3E-16 1.2E-20 140.9 22.3 226 156-398 222-475 (555)
204 PRK03629 tolB translocation pr 99.7 1.5E-15 3.3E-20 138.3 24.9 216 133-376 198-427 (429)
205 KOG1538 Uncharacterized conser 99.7 3.5E-16 7.5E-21 138.5 18.3 267 53-354 14-293 (1081)
206 KOG1310 WD40 repeat protein [G 99.7 2.1E-16 4.6E-21 136.7 16.1 214 168-404 42-312 (758)
207 PRK02889 tolB translocation pr 99.7 3.1E-15 6.8E-20 136.4 24.4 220 132-377 194-425 (427)
208 KOG2394 WD40 protein DMR-N9 [G 99.7 1.1E-15 2.3E-20 132.1 19.6 218 136-375 126-383 (636)
209 PRK05137 tolB translocation pr 99.7 9.2E-15 2E-19 134.1 27.0 213 157-398 183-415 (435)
210 KOG2321 WD40 repeat protein [G 99.7 2.1E-15 4.6E-20 131.3 21.1 246 125-397 43-345 (703)
211 KOG1240 Protein kinase contain 99.7 5.6E-15 1.2E-19 139.4 24.5 256 129-400 1044-1339(1431)
212 KOG1272 WD40-repeat-containing 99.7 6.4E-17 1.4E-21 137.1 9.6 250 93-378 136-391 (545)
213 PRK04922 tolB translocation pr 99.7 6.9E-15 1.5E-19 134.7 23.7 217 132-376 202-432 (433)
214 PRK03629 tolB translocation pr 99.7 2.9E-14 6.3E-19 130.0 27.5 212 157-397 180-408 (429)
215 KOG1334 WD40 repeat protein [G 99.7 3.5E-16 7.6E-21 133.5 13.8 290 88-401 144-472 (559)
216 PRK05137 tolB translocation pr 99.7 1.6E-14 3.5E-19 132.4 25.8 216 132-376 200-432 (435)
217 KOG3881 Uncharacterized conser 99.7 8.1E-15 1.8E-19 122.0 20.3 243 138-402 60-327 (412)
218 KOG2111 Uncharacterized conser 99.7 8E-14 1.7E-18 113.1 25.1 231 137-398 9-259 (346)
219 PF02239 Cytochrom_D1: Cytochr 99.7 7.8E-14 1.7E-18 123.4 27.5 303 70-401 13-353 (369)
220 PRK04922 tolB translocation pr 99.7 2.7E-14 5.8E-19 130.8 24.0 213 156-397 184-413 (433)
221 PF08662 eIF2A: Eukaryotic tra 99.7 1.8E-14 3.9E-19 115.8 18.5 155 245-403 9-186 (194)
222 PF08662 eIF2A: Eukaryotic tra 99.7 3.9E-14 8.5E-19 113.9 20.4 157 136-321 8-186 (194)
223 KOG1240 Protein kinase contain 99.6 3.5E-14 7.7E-19 134.1 22.1 227 161-404 1034-1282(1431)
224 KOG2139 WD40 repeat protein [G 99.6 2E-13 4.4E-18 112.7 23.9 272 94-397 106-433 (445)
225 PRK02889 tolB translocation pr 99.6 1.7E-13 3.7E-18 125.1 26.0 211 156-395 176-403 (427)
226 KOG1310 WD40 repeat protein [G 99.6 4.2E-15 9.1E-20 128.9 13.7 217 131-361 48-310 (758)
227 KOG0322 G-protein beta subunit 99.6 2.3E-14 4.9E-19 113.2 16.2 150 144-313 163-322 (323)
228 KOG2321 WD40 repeat protein [G 99.6 6.4E-14 1.4E-18 122.3 20.4 210 130-357 130-346 (703)
229 KOG2394 WD40 protein DMR-N9 [G 99.6 8.9E-15 1.9E-19 126.5 14.8 137 133-293 219-383 (636)
230 KOG0644 Uncharacterized conser 99.6 2.5E-15 5.4E-20 136.3 10.4 271 93-400 197-473 (1113)
231 KOG1409 Uncharacterized conser 99.6 1.6E-13 3.4E-18 112.6 19.8 263 133-396 68-395 (404)
232 KOG4497 Uncharacterized conser 99.6 4.9E-14 1.1E-18 114.9 16.7 187 138-352 13-238 (447)
233 KOG2139 WD40 repeat protein [G 99.6 9.4E-14 2E-18 114.6 18.4 234 135-383 100-362 (445)
234 KOG3881 Uncharacterized conser 99.6 6.7E-14 1.4E-18 116.6 17.6 213 99-335 116-342 (412)
235 PRK00178 tolB translocation pr 99.6 5.5E-13 1.2E-17 122.6 24.8 217 132-376 197-427 (430)
236 PF02239 Cytochrom_D1: Cytochr 99.6 7.1E-12 1.5E-16 111.0 30.1 191 145-359 5-207 (369)
237 TIGR02800 propeller_TolB tol-p 99.6 6.7E-13 1.5E-17 121.9 24.3 214 133-374 189-416 (417)
238 PF10282 Lactonase: Lactonase, 99.6 2.3E-11 5E-16 108.0 32.8 254 134-396 37-323 (345)
239 PRK04792 tolB translocation pr 99.6 7.9E-13 1.7E-17 121.1 23.2 216 133-376 217-446 (448)
240 TIGR02800 propeller_TolB tol-p 99.6 2.1E-12 4.5E-17 118.6 25.9 211 156-395 170-397 (417)
241 KOG1334 WD40 repeat protein [G 99.6 7.1E-14 1.5E-18 119.7 14.7 247 133-400 142-429 (559)
242 KOG0974 WD-repeat protein WDR6 99.6 2.8E-13 6E-18 126.3 19.3 198 93-318 94-292 (967)
243 KOG2111 Uncharacterized conser 99.6 9.3E-12 2E-16 101.4 25.6 224 145-395 58-322 (346)
244 KOG1354 Serine/threonine prote 99.6 2E-12 4.3E-17 106.2 21.0 262 134-398 26-362 (433)
245 PRK00178 tolB translocation pr 99.5 1.3E-11 2.8E-16 113.5 27.0 212 157-397 180-408 (430)
246 PRK01029 tolB translocation pr 99.5 1.7E-11 3.6E-16 111.5 26.1 218 156-399 165-407 (428)
247 PF10282 Lactonase: Lactonase, 99.5 2.6E-10 5.7E-15 101.2 31.9 261 93-374 43-345 (345)
248 PRK01029 tolB translocation pr 99.5 2.1E-11 4.7E-16 110.8 25.2 221 134-377 185-425 (428)
249 PRK04792 tolB translocation pr 99.5 3.8E-11 8.2E-16 110.1 26.7 211 157-396 199-426 (448)
250 TIGR02658 TTQ_MADH_Hv methylam 99.5 2.5E-10 5.4E-15 98.9 29.9 221 156-403 27-338 (352)
251 KOG4547 WD40 repeat-containing 99.5 2.1E-11 4.6E-16 107.3 21.3 189 186-396 3-221 (541)
252 PLN02919 haloacid dehalogenase 99.5 2.1E-09 4.6E-14 107.8 37.9 213 136-358 626-892 (1057)
253 KOG0974 WD-repeat protein WDR6 99.4 5.1E-12 1.1E-16 118.1 17.3 191 139-355 93-289 (967)
254 PLN02919 haloacid dehalogenase 99.4 3.9E-10 8.4E-15 113.0 31.9 253 138-399 572-892 (1057)
255 KOG4547 WD40 repeat-containing 99.4 6.1E-11 1.3E-15 104.5 22.4 145 144-314 68-220 (541)
256 KOG2315 Predicted translation 99.4 7.5E-10 1.6E-14 97.1 28.7 252 136-396 37-391 (566)
257 KOG1409 Uncharacterized conser 99.4 3.1E-11 6.7E-16 99.4 18.6 246 138-407 29-282 (404)
258 TIGR02658 TTQ_MADH_Hv methylam 99.4 5.9E-09 1.3E-13 90.5 32.4 269 73-363 27-339 (352)
259 KOG2041 WD40 repeat protein [G 99.4 5.8E-11 1.3E-15 106.9 19.6 236 134-394 15-336 (1189)
260 KOG0280 Uncharacterized conser 99.4 1.1E-10 2.5E-15 94.1 19.2 234 144-399 83-337 (339)
261 KOG1354 Serine/threonine prote 99.4 2.6E-11 5.6E-16 99.8 15.7 218 175-400 24-306 (433)
262 COG2706 3-carboxymuconate cycl 99.4 7.5E-09 1.6E-13 86.5 30.4 250 133-402 39-328 (346)
263 KOG1064 RAVE (regulator of V-A 99.4 7.3E-12 1.6E-16 123.0 14.4 220 134-388 2209-2439(2439)
264 KOG0280 Uncharacterized conser 99.4 2.9E-10 6.3E-15 91.8 20.0 194 135-352 123-331 (339)
265 TIGR03300 assembly_YfgL outer 99.4 3.6E-09 7.8E-14 95.7 29.3 297 63-392 65-376 (377)
266 COG2706 3-carboxymuconate cycl 99.4 5.3E-09 1.2E-13 87.4 27.3 263 93-375 46-345 (346)
267 KOG1064 RAVE (regulator of V-A 99.3 8.4E-12 1.8E-16 122.6 12.1 192 173-400 2205-2403(2439)
268 KOG4190 Uncharacterized conser 99.3 3.2E-12 6.9E-17 111.6 7.9 211 169-398 728-951 (1034)
269 PRK04043 tolB translocation pr 99.3 1.4E-09 3E-14 98.4 25.1 206 135-370 189-415 (419)
270 KOG0309 Conserved WD40 repeat- 99.3 2E-11 4.3E-16 110.2 12.5 275 93-396 31-340 (1081)
271 COG5354 Uncharacterized protei 99.3 1.2E-09 2.5E-14 94.9 22.4 292 92-398 38-398 (561)
272 KOG1912 WD40 repeat protein [G 99.3 7.2E-10 1.6E-14 100.9 21.5 239 138-403 20-312 (1062)
273 COG4946 Uncharacterized protei 99.3 3.6E-09 7.7E-14 91.2 24.3 146 144-318 331-481 (668)
274 PF04762 IKI3: IKI3 family; I 99.3 3.3E-08 7.3E-13 97.5 33.4 323 52-397 76-521 (928)
275 TIGR03300 assembly_YfgL outer 99.3 4.3E-09 9.3E-14 95.2 25.4 233 144-403 104-346 (377)
276 PRK04043 tolB translocation pr 99.2 2.1E-08 4.6E-13 90.8 27.3 210 157-397 170-402 (419)
277 KOG3914 WD repeat protein WDR4 99.2 2.4E-10 5.1E-15 96.3 13.5 156 244-401 65-229 (390)
278 KOG2314 Translation initiation 99.2 2.7E-09 6E-14 93.6 20.4 269 93-396 217-526 (698)
279 COG5170 CDC55 Serine/threonine 99.2 1.6E-09 3.4E-14 88.4 17.1 258 133-393 26-365 (460)
280 KOG4532 WD40-like repeat conta 99.2 1.5E-08 3.3E-13 81.1 21.7 227 146-399 85-335 (344)
281 PF04762 IKI3: IKI3 family; I 99.2 1.6E-08 3.5E-13 99.7 26.7 255 133-393 75-377 (928)
282 COG4946 Uncharacterized protei 99.2 1.5E-08 3.3E-13 87.4 23.0 209 142-381 275-503 (668)
283 COG5170 CDC55 Serine/threonine 99.2 7.4E-10 1.6E-14 90.3 14.0 209 175-402 25-316 (460)
284 PF08450 SGL: SMP-30/Gluconola 99.2 6.3E-07 1.4E-11 75.9 31.5 210 138-377 4-236 (246)
285 PF13360 PQQ_2: PQQ-like domai 99.1 2.4E-08 5.3E-13 84.2 22.1 216 155-400 2-235 (238)
286 PF07433 DUF1513: Protein of u 99.1 5.7E-07 1.2E-11 75.5 28.9 234 135-393 6-283 (305)
287 KOG4532 WD40-like repeat conta 99.1 3.6E-08 7.8E-13 79.0 20.5 216 155-400 51-287 (344)
288 PF15492 Nbas_N: Neuroblastoma 99.1 3.7E-07 8.1E-12 74.3 26.1 234 140-401 4-265 (282)
289 PF15492 Nbas_N: Neuroblastoma 99.1 7.4E-08 1.6E-12 78.3 21.5 199 135-365 45-270 (282)
290 PRK11138 outer membrane biogen 99.1 6.2E-07 1.4E-11 81.6 29.1 226 145-394 160-393 (394)
291 KOG3914 WD repeat protein WDR4 99.1 5.4E-09 1.2E-13 88.3 13.5 153 142-320 70-230 (390)
292 COG5354 Uncharacterized protei 99.0 3.4E-07 7.3E-12 80.0 24.4 196 134-357 174-398 (561)
293 KOG2315 Predicted translation 99.0 4.4E-08 9.5E-13 86.3 18.7 173 133-335 217-411 (566)
294 KOG4714 Nucleoporin [Nuclear s 99.0 5.7E-09 1.2E-13 83.1 11.5 150 97-272 100-255 (319)
295 KOG4649 PQQ (pyrrolo-quinoline 99.0 7.9E-07 1.7E-11 71.3 23.1 243 145-397 63-353 (354)
296 KOG2041 WD40 repeat protein [G 99.0 7.7E-09 1.7E-13 93.6 13.1 214 176-397 14-249 (1189)
297 PF08450 SGL: SMP-30/Gluconola 99.0 5.5E-06 1.2E-10 70.1 29.2 180 136-342 42-243 (246)
298 PRK11138 outer membrane biogen 99.0 3E-07 6.6E-12 83.6 22.6 232 145-403 120-361 (394)
299 KOG4714 Nucleoporin [Nuclear s 99.0 4.8E-09 1E-13 83.5 9.0 205 179-396 39-255 (319)
300 KOG2695 WD40 repeat protein [G 99.0 6.7E-09 1.5E-13 86.0 10.2 151 149-321 228-384 (425)
301 KOG2066 Vacuolar assembly/sort 99.0 1E-07 2.3E-12 87.7 18.7 182 176-397 39-235 (846)
302 KOG2695 WD40 repeat protein [G 98.9 5.5E-09 1.2E-13 86.5 9.5 145 257-404 228-385 (425)
303 PF00400 WD40: WD domain, G-be 98.9 3.9E-09 8.4E-14 60.7 5.5 39 166-204 1-39 (39)
304 KOG1275 PAB-dependent poly(A) 98.9 4.9E-08 1.1E-12 90.9 15.0 179 144-352 146-340 (1118)
305 KOG4190 Uncharacterized conser 98.9 1.5E-08 3.3E-13 89.1 10.2 212 129-363 731-957 (1034)
306 KOG2114 Vacuolar assembly/sort 98.9 8.8E-07 1.9E-11 82.4 21.1 207 141-367 31-257 (933)
307 KOG0882 Cyclophilin-related pe 98.8 1.2E-07 2.5E-12 81.6 14.3 238 98-362 20-313 (558)
308 KOG0309 Conserved WD40 repeat- 98.8 2.8E-08 6.1E-13 90.4 11.0 206 176-405 24-242 (1081)
309 KOG2314 Translation initiation 98.8 9.9E-07 2.2E-11 78.0 20.0 252 71-354 280-573 (698)
310 PF13360 PQQ_2: PQQ-like domai 98.8 1.8E-06 3.8E-11 72.8 21.6 191 143-361 34-237 (238)
311 KOG1912 WD40 repeat protein [G 98.8 5.1E-06 1.1E-10 76.6 24.7 305 94-403 73-514 (1062)
312 KOG1920 IkappaB kinase complex 98.8 4.2E-06 9.2E-11 81.0 25.2 255 133-394 68-364 (1265)
313 KOG2114 Vacuolar assembly/sort 98.8 7.3E-07 1.6E-11 82.9 19.1 196 184-404 31-252 (933)
314 KOG1645 RING-finger-containing 98.8 2.8E-07 6.2E-12 78.1 15.1 239 132-396 192-462 (463)
315 KOG0882 Cyclophilin-related pe 98.8 2.5E-07 5.4E-12 79.6 14.1 231 145-399 19-309 (558)
316 PF00400 WD40: WD domain, G-be 98.8 3E-08 6.4E-13 56.9 5.9 37 233-269 3-39 (39)
317 KOG1832 HIV-1 Vpr-binding prot 98.7 8.8E-09 1.9E-13 95.5 4.6 207 136-381 1104-1316(1516)
318 KOG1832 HIV-1 Vpr-binding prot 98.7 7.5E-09 1.6E-13 95.9 3.2 195 167-400 1092-1296(1516)
319 PF06977 SdiA-regulated: SdiA- 98.7 8.7E-05 1.9E-09 61.7 26.4 203 133-351 21-247 (248)
320 PF11768 DUF3312: Protein of u 98.7 0.00012 2.5E-09 66.2 28.4 108 287-396 208-330 (545)
321 KOG1920 IkappaB kinase complex 98.6 6.3E-06 1.4E-10 79.8 20.1 198 176-397 68-324 (1265)
322 cd00216 PQQ_DH Dehydrogenases 98.6 9.5E-05 2.1E-09 69.1 27.6 250 146-405 111-434 (488)
323 KOG2066 Vacuolar assembly/sort 98.6 9E-06 1.9E-10 75.4 19.2 170 147-354 50-233 (846)
324 PF06433 Me-amine-dh_H: Methyl 98.6 0.00026 5.5E-09 60.7 26.3 237 139-402 41-327 (342)
325 PF11768 DUF3312: Protein of u 98.6 5.1E-06 1.1E-10 74.7 16.7 94 158-276 238-334 (545)
326 KOG1275 PAB-dependent poly(A) 98.6 3.8E-06 8.3E-11 78.8 16.2 185 187-400 146-346 (1118)
327 KOG4649 PQQ (pyrrolo-quinoline 98.6 0.00014 2.9E-09 58.8 22.7 147 142-314 19-165 (354)
328 PF07433 DUF1513: Protein of u 98.6 6.4E-05 1.4E-09 63.4 21.8 196 139-350 56-281 (305)
329 KOG1787 Kinase A-anchor protei 98.5 1.5E-06 3.3E-11 85.2 13.2 203 1-206 718-946 (1126)
330 cd00216 PQQ_DH Dehydrogenases 98.5 0.00032 7E-09 65.6 28.1 208 155-382 174-453 (488)
331 KOG3617 WD40 and TPR repeat-co 98.5 4.8E-06 1.1E-10 77.6 15.2 107 140-271 22-131 (1416)
332 KOG1645 RING-finger-containing 98.5 6.3E-06 1.4E-10 70.2 14.7 218 158-401 175-425 (463)
333 PF04053 Coatomer_WDAD: Coatom 98.5 0.00047 1E-08 62.7 27.4 218 135-398 34-265 (443)
334 PF06977 SdiA-regulated: SdiA- 98.5 0.00016 3.4E-09 60.2 21.8 197 171-392 16-247 (248)
335 PRK02888 nitrous-oxide reducta 98.5 0.00056 1.2E-08 63.5 26.9 185 141-355 200-405 (635)
336 KOG1008 Uncharacterized conser 98.4 7.6E-08 1.6E-12 86.4 2.1 198 177-396 57-276 (783)
337 PF00930 DPPIV_N: Dipeptidyl p 98.4 0.00017 3.6E-09 64.6 23.1 248 133-382 42-343 (353)
338 PF04841 Vps16_N: Vps16, N-ter 98.4 0.00049 1.1E-08 62.5 25.5 199 157-378 62-271 (410)
339 PF03178 CPSF_A: CPSF A subuni 98.4 0.00034 7.3E-09 61.8 24.0 214 156-392 2-262 (321)
340 KOG3621 WD40 repeat-containing 98.4 0.00024 5.2E-09 65.4 22.7 236 137-400 79-358 (726)
341 PRK02888 nitrous-oxide reducta 98.4 0.00014 3.1E-09 67.3 21.5 221 144-396 140-405 (635)
342 COG0823 TolB Periplasmic compo 98.4 7E-05 1.5E-09 67.8 18.7 185 134-345 193-390 (425)
343 COG0823 TolB Periplasmic compo 98.4 4.7E-05 1E-09 68.9 17.6 197 157-381 174-384 (425)
344 PF08553 VID27: VID27 cytoplas 98.3 1.9E-05 4.1E-10 75.6 15.5 136 259-395 500-647 (794)
345 KOG1008 Uncharacterized conser 98.3 1.7E-07 3.7E-12 84.2 1.7 187 145-354 69-275 (783)
346 COG3391 Uncharacterized conser 98.3 0.0021 4.5E-08 58.1 27.9 236 137-398 34-286 (381)
347 COG3391 Uncharacterized conser 98.3 0.0011 2.5E-08 59.8 25.3 216 137-377 77-309 (381)
348 PF14583 Pectate_lyase22: Olig 98.3 0.0014 3E-08 57.4 24.1 297 89-395 38-381 (386)
349 KOG3617 WD40 and TPR repeat-co 98.3 0.0001 2.2E-09 69.2 17.6 260 106-377 39-366 (1416)
350 PF14583 Pectate_lyase22: Olig 98.2 0.0017 3.8E-08 56.8 22.7 215 141-382 43-298 (386)
351 PF06433 Me-amine-dh_H: Methyl 98.2 0.0034 7.5E-08 54.0 24.1 206 139-365 100-331 (342)
352 KOG3621 WD40 repeat-containing 98.2 3.1E-05 6.8E-10 70.9 12.2 137 175-333 32-179 (726)
353 PF08596 Lgl_C: Lethal giant l 98.2 0.0021 4.5E-08 57.8 23.5 223 178-402 3-297 (395)
354 PF08553 VID27: VID27 cytoplas 98.2 0.00049 1.1E-08 66.2 20.4 147 146-313 494-646 (794)
355 PF04053 Coatomer_WDAD: Coatom 98.1 0.00049 1.1E-08 62.6 19.5 211 93-355 39-263 (443)
356 PF00780 CNH: CNH domain; Int 98.1 0.0044 9.5E-08 53.5 24.5 198 136-365 38-266 (275)
357 COG3386 Gluconolactonase [Carb 98.1 0.0047 1E-07 53.4 25.3 211 140-377 31-265 (307)
358 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.1 0.0061 1.3E-07 57.5 26.7 258 146-406 121-501 (527)
359 PF02897 Peptidase_S9_N: Proly 98.1 0.0059 1.3E-07 56.2 26.5 238 138-401 128-410 (414)
360 COG3490 Uncharacterized protei 98.1 0.0043 9.4E-08 51.2 22.0 241 133-398 67-351 (366)
361 PF14783 BBS2_Mid: Ciliary BBS 98.0 0.0013 2.9E-08 46.3 14.8 101 244-350 2-110 (111)
362 KOG2395 Protein involved in va 97.9 0.00026 5.7E-09 63.0 12.9 138 255-395 348-500 (644)
363 PF14655 RAB3GAP2_N: Rab3 GTPa 97.9 0.0015 3.3E-08 58.4 17.9 87 325-411 308-414 (415)
364 PF00930 DPPIV_N: Dipeptidyl p 97.9 0.0032 6.9E-08 56.4 20.3 244 142-395 1-315 (353)
365 PF08596 Lgl_C: Lethal giant l 97.9 0.012 2.6E-07 53.0 23.2 203 174-395 84-335 (395)
366 PF03178 CPSF_A: CPSF A subuni 97.9 0.014 3E-07 51.6 23.6 168 156-351 62-262 (321)
367 smart00320 WD40 WD40 repeats. 97.9 4.9E-05 1.1E-09 42.7 5.4 39 166-204 2-40 (40)
368 KOG4640 Anaphase-promoting com 97.8 0.00012 2.6E-09 66.5 9.3 95 176-294 20-115 (665)
369 KOG2395 Protein involved in va 97.8 0.00088 1.9E-08 59.9 13.6 148 142-314 342-500 (644)
370 COG3386 Gluconolactonase [Carb 97.8 0.014 3.1E-07 50.5 20.9 191 183-401 31-248 (307)
371 PF00780 CNH: CNH domain; Int 97.8 0.011 2.4E-07 51.0 20.6 144 186-358 5-169 (275)
372 KOG4640 Anaphase-promoting com 97.8 0.00018 4E-09 65.3 9.5 93 240-334 19-115 (665)
373 PF14783 BBS2_Mid: Ciliary BBS 97.8 0.0055 1.2E-07 43.3 14.8 99 287-390 2-109 (111)
374 KOG2444 WD40 repeat protein [G 97.7 5.3E-05 1.2E-09 60.1 4.6 141 256-399 33-181 (238)
375 PRK13616 lipoprotein LpqB; Pro 97.7 0.0032 6.9E-08 59.8 17.1 147 242-394 350-524 (591)
376 PRK13616 lipoprotein LpqB; Pro 97.7 0.009 1.9E-07 56.8 19.6 182 177-389 350-562 (591)
377 KOG1897 Damage-specific DNA bi 97.6 0.084 1.8E-06 51.5 26.9 304 63-398 548-901 (1096)
378 KOG1897 Damage-specific DNA bi 97.6 0.087 1.9E-06 51.4 28.8 271 129-402 528-863 (1096)
379 smart00320 WD40 WD40 repeats. 97.5 0.00023 5.1E-09 39.7 4.8 37 233-269 4-40 (40)
380 PF02897 Peptidase_S9_N: Proly 97.5 0.066 1.4E-06 49.3 22.2 193 178-395 125-357 (414)
381 PHA02713 hypothetical protein; 97.4 0.023 5E-07 54.2 19.0 144 252-398 351-536 (557)
382 KOG4441 Proteins containing BT 97.4 0.053 1.1E-06 51.7 20.5 214 156-397 301-548 (571)
383 PF04841 Vps16_N: Vps16, N-ter 97.3 0.12 2.5E-06 47.3 26.3 83 249-336 186-271 (410)
384 COG3204 Uncharacterized protei 97.3 0.059 1.3E-06 45.2 17.7 159 238-396 82-264 (316)
385 TIGR03074 PQQ_membr_DH membran 97.3 0.22 4.8E-06 49.0 24.2 240 145-403 194-485 (764)
386 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.3 0.18 3.9E-06 47.7 29.9 31 335-365 471-501 (527)
387 KOG2079 Vacuolar assembly/sort 97.2 0.002 4.2E-08 62.6 8.9 101 294-396 97-204 (1206)
388 COG3204 Uncharacterized protei 97.2 0.11 2.3E-06 43.6 19.5 229 136-391 45-308 (316)
389 PF05096 Glu_cyclase_2: Glutam 97.2 0.11 2.4E-06 43.3 20.1 153 244-400 47-208 (264)
390 PF12894 Apc4_WD40: Anaphase-p 97.1 0.0021 4.6E-08 37.8 5.4 35 323-358 10-44 (47)
391 PHA02713 hypothetical protein; 97.0 0.043 9.2E-07 52.4 16.5 100 264-366 433-545 (557)
392 KOG4441 Proteins containing BT 96.9 0.33 7.3E-06 46.4 21.1 183 144-356 332-548 (571)
393 KOG2079 Vacuolar assembly/sort 96.9 0.037 8E-07 54.3 14.5 98 148-270 101-202 (1206)
394 PRK10115 protease 2; Provision 96.9 0.54 1.2E-05 46.3 28.9 236 136-398 129-397 (686)
395 PF12894 Apc4_WD40: Anaphase-p 96.8 0.0043 9.3E-08 36.5 4.7 35 241-276 11-45 (47)
396 PF05694 SBP56: 56kDa selenium 96.7 0.41 8.9E-06 42.9 19.4 190 144-356 86-344 (461)
397 KOG2444 WD40 repeat protein [G 96.7 0.0043 9.4E-08 49.5 5.7 104 99-208 71-179 (238)
398 COG5167 VID27 Protein involved 96.7 0.072 1.6E-06 48.0 13.4 148 142-314 476-632 (776)
399 PF10647 Gmad1: Lipoprotein Lp 96.5 0.41 8.8E-06 40.6 21.4 146 178-347 25-188 (253)
400 COG5167 VID27 Protein involved 96.5 0.055 1.2E-06 48.8 11.8 138 256-396 483-633 (776)
401 TIGR02604 Piru_Ver_Nterm putat 96.5 0.27 5.8E-06 44.4 16.5 148 177-345 14-204 (367)
402 PF12234 Rav1p_C: RAVE protein 96.5 0.19 4.2E-06 47.7 15.7 107 287-394 32-155 (631)
403 PHA03098 kelch-like protein; P 96.4 0.32 6.9E-06 46.5 17.6 103 252-357 389-514 (534)
404 PF14870 PSII_BNR: Photosynthe 96.3 0.62 1.3E-05 40.4 25.1 112 284-397 144-262 (302)
405 TIGR03118 PEPCTERM_chp_1 conse 96.3 0.56 1.2E-05 39.9 22.7 221 137-376 26-307 (336)
406 PF15390 DUF4613: Domain of un 96.3 0.97 2.1E-05 42.0 18.3 142 239-381 54-217 (671)
407 COG3490 Uncharacterized protei 96.2 0.59 1.3E-05 39.2 15.6 205 140-352 120-346 (366)
408 KOG3630 Nuclear pore complex, 96.2 0.098 2.1E-06 51.8 12.5 139 243-382 102-259 (1405)
409 PF05096 Glu_cyclase_2: Glutam 96.2 0.66 1.4E-05 38.9 25.2 189 167-384 34-250 (264)
410 PF14727 PHTB1_N: PTHB1 N-term 96.1 1 2.3E-05 40.9 27.4 270 97-398 36-363 (418)
411 PHA03098 kelch-like protein; P 96.1 0.63 1.4E-05 44.5 17.8 142 252-397 342-513 (534)
412 KOG2280 Vacuolar assembly/sort 95.9 0.7 1.5E-05 44.1 16.1 184 156-363 64-255 (829)
413 PF14870 PSII_BNR: Photosynthe 95.9 1 2.2E-05 39.1 24.1 150 239-392 142-301 (302)
414 TIGR03118 PEPCTERM_chp_1 conse 95.9 0.94 2E-05 38.6 20.5 204 178-398 24-282 (336)
415 PHA02790 Kelch-like protein; P 95.8 1.5 3.3E-05 41.2 18.5 99 252-356 362-472 (480)
416 KOG3630 Nuclear pore complex, 95.8 0.081 1.8E-06 52.4 10.0 143 135-301 102-260 (1405)
417 COG1520 FOG: WD40-like repeat 95.8 1.4 3E-05 39.9 22.5 187 153-365 75-279 (370)
418 PF14761 HPS3_N: Hermansky-Pud 95.8 0.82 1.8E-05 36.9 15.2 137 254-395 29-214 (215)
419 PF12234 Rav1p_C: RAVE protein 95.8 0.95 2.1E-05 43.3 16.6 110 242-353 30-155 (631)
420 KOG4499 Ca2+-binding protein R 95.6 1 2.2E-05 36.7 15.8 122 285-406 109-252 (310)
421 TIGR02604 Piru_Ver_Nterm putat 95.5 1.6 3.5E-05 39.4 17.0 138 242-383 14-200 (367)
422 PF10647 Gmad1: Lipoprotein Lp 95.3 1.5 3.3E-05 37.1 20.8 149 135-306 25-187 (253)
423 PF08728 CRT10: CRT10; InterP 95.3 1.6 3.4E-05 42.4 16.4 109 243-353 102-245 (717)
424 PF05694 SBP56: 56kDa selenium 95.3 2.2 4.8E-05 38.5 21.7 202 187-400 86-347 (461)
425 PF15390 DUF4613: Domain of un 95.2 2.6 5.7E-05 39.3 17.3 122 175-315 55-187 (671)
426 KOG1916 Nuclear protein, conta 95.2 0.021 4.6E-07 54.8 3.9 54 156-209 153-216 (1283)
427 KOG2247 WD40 repeat-containing 95.1 0.0034 7.4E-08 55.8 -1.5 144 245-391 38-184 (615)
428 PHA02790 Kelch-like protein; P 95.0 3.2 6.9E-05 39.1 18.5 140 251-397 317-472 (480)
429 PF07569 Hira: TUP1-like enhan 94.9 0.19 4E-06 41.4 8.3 63 333-395 19-95 (219)
430 PF10168 Nup88: Nuclear pore c 94.9 0.73 1.6E-05 45.2 13.4 75 325-400 85-184 (717)
431 PF10313 DUF2415: Uncharacteri 94.7 0.18 4E-06 28.7 5.2 32 242-273 1-35 (43)
432 COG4590 ABC-type uncharacteriz 94.6 0.14 3.1E-06 45.6 7.0 173 169-362 213-394 (733)
433 KOG4499 Ca2+-binding protein R 94.5 2.3 4.9E-05 34.8 17.3 91 287-377 160-264 (310)
434 PF08728 CRT10: CRT10; InterP 94.3 3.1 6.8E-05 40.4 15.7 141 253-394 49-245 (717)
435 PF10313 DUF2415: Uncharacteri 94.2 0.32 7E-06 27.7 5.5 31 325-355 1-34 (43)
436 KOG1916 Nuclear protein, conta 94.1 0.16 3.4E-06 49.3 6.7 162 237-400 128-328 (1283)
437 KOG1900 Nuclear pore complex, 94.0 1 2.2E-05 45.9 12.3 144 155-315 98-273 (1311)
438 PF14781 BBS2_N: Ciliary BBSom 94.0 1.8 3.9E-05 32.0 13.1 113 247-362 4-133 (136)
439 PF14655 RAB3GAP2_N: Rab3 GTPa 94.0 0.9 2E-05 41.2 11.0 51 234-284 300-350 (415)
440 COG1520 FOG: WD40-like repeat 93.8 5 0.00011 36.3 16.3 146 255-402 70-224 (370)
441 KOG4460 Nuclear pore complex, 93.7 1.3 2.8E-05 40.6 11.1 75 326-400 105-203 (741)
442 TIGR03074 PQQ_membr_DH membran 93.5 3.1 6.7E-05 41.4 14.7 111 253-363 194-353 (764)
443 PRK13684 Ycf48-like protein; P 93.5 5.3 0.00011 35.6 25.3 111 284-397 172-289 (334)
444 KOG2247 WD40 repeat-containing 93.3 0.01 2.2E-07 52.9 -2.2 139 96-267 44-184 (615)
445 PF13449 Phytase-like: Esteras 93.3 5.6 0.00012 35.3 17.6 155 241-395 19-249 (326)
446 COG3823 Glutamine cyclotransfe 93.2 3.6 7.9E-05 33.0 12.6 66 144-209 55-122 (262)
447 TIGR02276 beta_rpt_yvtn 40-res 93.1 0.68 1.5E-05 26.2 6.1 32 143-174 1-32 (42)
448 PRK10115 protease 2; Provision 93.1 9.9 0.00021 37.7 29.4 198 137-357 175-397 (686)
449 PF07569 Hira: TUP1-like enhan 92.9 0.93 2E-05 37.4 8.7 65 249-314 18-95 (219)
450 PRK13684 Ycf48-like protein; P 92.7 6.9 0.00015 34.8 26.2 149 241-394 172-330 (334)
451 PF14761 HPS3_N: Hermansky-Pud 92.6 4.7 0.0001 32.7 15.2 125 146-274 29-166 (215)
452 COG3823 Glutamine cyclotransfe 92.6 4.2 9.1E-05 32.7 11.2 105 252-359 55-163 (262)
453 PF10168 Nup88: Nuclear pore c 92.6 3 6.6E-05 41.0 13.0 25 242-266 85-109 (717)
454 PF05935 Arylsulfotrans: Aryls 92.5 9.6 0.00021 35.9 16.7 132 262-398 127-304 (477)
455 KOG2377 Uncharacterized conser 92.5 3.7 8.1E-05 37.1 12.0 140 180-342 26-171 (657)
456 TIGR02276 beta_rpt_yvtn 40-res 92.4 0.86 1.9E-05 25.8 5.9 40 334-374 1-41 (42)
457 PF07995 GSDH: Glucose / Sorbo 92.0 8.5 0.00018 34.2 25.0 66 325-390 253-330 (331)
458 KOG2377 Uncharacterized conser 92.0 6.9 0.00015 35.5 13.1 148 246-396 27-186 (657)
459 PLN00033 photosystem II stabil 91.9 9.8 0.00021 34.7 28.8 143 244-392 241-396 (398)
460 KOG1983 Tomosyn and related SN 91.9 5.9 0.00013 40.8 14.5 74 325-404 199-273 (993)
461 COG4257 Vgb Streptogramin lyas 91.8 7.1 0.00015 32.9 20.1 240 133-396 61-306 (353)
462 TIGR03548 mutarot_permut cycli 91.6 9.2 0.0002 33.8 22.5 94 252-345 123-233 (323)
463 KOG4460 Nuclear pore complex, 91.5 3.3 7.1E-05 38.1 10.8 26 243-268 105-130 (741)
464 PF14781 BBS2_N: Ciliary BBSom 91.2 4.8 0.00011 29.8 11.8 119 181-318 3-129 (136)
465 PF08801 Nucleoporin_N: Nup133 90.7 14 0.0003 34.2 16.9 31 325-355 190-220 (422)
466 KOG2280 Vacuolar assembly/sort 90.2 19 0.00041 35.1 16.2 55 242-296 217-271 (829)
467 PF12768 Rax2: Cortical protei 90.2 9.4 0.0002 32.8 12.1 55 155-209 15-75 (281)
468 PF02333 Phytase: Phytase; In 90.0 14 0.00031 33.2 24.0 198 145-362 67-299 (381)
469 KOG3616 Selective LIM binding 90.0 4.1 8.8E-05 39.3 10.4 70 240-315 13-84 (1636)
470 COG4590 ABC-type uncharacteriz 89.8 2.1 4.5E-05 38.6 8.0 165 235-401 214-392 (733)
471 PRK14131 N-acetylneuraminic ac 89.8 15 0.00033 33.3 22.5 22 144-165 38-59 (376)
472 KOG1786 Lysosomal trafficking 89.8 0.21 4.5E-06 51.2 2.3 35 1-35 595-629 (1081)
473 PF13449 Phytase-like: Esteras 89.0 16 0.00034 32.4 17.5 151 176-341 19-231 (326)
474 PF14727 PHTB1_N: PTHB1 N-term 88.9 19 0.00041 33.1 27.8 153 143-313 34-203 (418)
475 TIGR03547 muta_rot_YjhT mutatr 88.8 17 0.00037 32.5 22.1 52 263-314 168-225 (346)
476 COG4880 Secreted protein conta 88.5 18 0.0004 32.6 13.3 178 157-361 407-599 (603)
477 TIGR03606 non_repeat_PQQ dehyd 88.5 21 0.00045 33.2 20.9 33 176-208 29-61 (454)
478 KOG1900 Nuclear pore complex, 88.0 9.3 0.0002 39.5 11.9 69 284-355 178-273 (1311)
479 PF11715 Nup160: Nucleoporin N 87.8 1.6 3.5E-05 41.9 6.8 94 186-281 156-258 (547)
480 smart00036 CNH Domain found in 87.7 18 0.0004 31.6 26.5 242 97-364 12-280 (302)
481 PF03022 MRJP: Major royal jel 87.7 18 0.00039 31.4 20.6 180 157-342 35-253 (287)
482 COG5276 Uncharacterized conser 87.3 18 0.00039 31.0 19.6 186 146-355 96-286 (370)
483 PF12768 Rax2: Cortical protei 87.2 18 0.0004 31.1 12.1 97 262-359 15-128 (281)
484 COG5290 IkappaB kinase complex 87.0 21 0.00046 35.0 12.9 89 288-377 250-347 (1243)
485 PF07676 PD40: WD40-like Beta 86.9 1.8 4E-05 24.0 4.1 28 134-161 9-38 (39)
486 PF07250 Glyoxal_oxid_N: Glyox 86.2 19 0.00041 30.2 12.1 48 159-206 49-99 (243)
487 COG4257 Vgb Streptogramin lyas 85.7 21 0.00045 30.3 22.0 223 93-356 68-307 (353)
488 PF07250 Glyoxal_oxid_N: Glyox 85.7 20 0.00043 30.1 11.2 129 133-280 66-206 (243)
489 PF12657 TFIIIC_delta: Transcr 85.2 8.2 0.00018 30.5 8.4 31 367-397 86-123 (173)
490 smart00564 PQQ beta-propeller 84.9 3.2 6.9E-05 21.8 4.3 25 338-362 8-32 (33)
491 PRK13614 lipoprotein LpqB; Pro 83.4 45 0.00097 32.2 17.3 150 243-397 344-520 (573)
492 PF11715 Nup160: Nucleoporin N 83.0 6.9 0.00015 37.6 8.5 37 326-362 216-256 (547)
493 PF03088 Str_synth: Strictosid 82.0 14 0.0003 25.3 8.2 40 303-342 34-74 (89)
494 TIGR03548 mutarot_permut cycli 82.0 36 0.00078 30.1 20.1 105 252-357 72-197 (323)
495 PF07995 GSDH: Glucose / Sorbo 81.8 37 0.00081 30.2 19.0 98 244-343 4-132 (331)
496 PLN02193 nitrile-specifier pro 81.8 47 0.001 31.3 21.3 104 252-357 278-413 (470)
497 PF01011 PQQ: PQQ enzyme repea 81.6 6 0.00013 21.8 4.6 26 338-363 2-27 (38)
498 TIGR03606 non_repeat_PQQ dehyd 81.3 47 0.001 31.0 15.1 105 240-344 28-165 (454)
499 PLN02193 nitrile-specifier pro 81.2 49 0.0011 31.2 20.9 104 252-358 228-355 (470)
500 PF12657 TFIIIC_delta: Transcr 80.6 15 0.00033 29.0 8.3 31 242-272 86-122 (173)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.8e-47 Score=308.75 Aligned_cols=313 Identities=19% Similarity=0.253 Sum_probs=262.2
Q ss_pred EEEEecCCCCCCeEEEEeecCCcEEEEecCceEEEE------Ee-eccCCCCCCceeeecCCCCccccCCCcCCCcccCC
Q 040361 52 TSIICSTRHQPSGIVYVGMLDSSIVLVNQGLTLSVK------MW-LTTQLQSGGNFTFSGSQDPFFGVGADILSPRNVGS 124 (413)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-~~~~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~ 124 (413)
..+++..|.|++..+.+|+.|..+.+|+.....+.. -| ++.++||||+.||+|+.||.+++ |+|+.-..
T Consensus 116 e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~l----wdpktg~~ 191 (480)
T KOG0271|consen 116 EAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRL----WDPKTGQQ 191 (480)
T ss_pred CcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEE----ecCCCCCc
Confidence 457777888888888888888888888876654332 34 44589999999999999999999 55543333
Q ss_pred CCcccceecceeEEEEecCC----CCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcE
Q 040361 125 PLAESFELGSQCFTTMQTPS----ENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTV 200 (413)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~----~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i 200 (413)
.-...-+|...+.+++|-|- +..++++++.||.++|||+..++++..+.+|+.+|+|+.|--+| +|++||.|++|
T Consensus 192 ~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtI 270 (480)
T KOG0271|consen 192 IGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTI 270 (480)
T ss_pred ccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceE
Confidence 33333345677888888662 33466667789999999999999999999999999999997554 89999999999
Q ss_pred EEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecC-----------C----------------
Q 040361 201 MVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVE-----------L---------------- 253 (413)
Q Consensus 201 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~-----------~---------------- 253 (413)
++|+...+. ....+++|...|+.++++.+ +
T Consensus 271 kvw~a~dG~-----------------------~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~r 327 (480)
T KOG0271|consen 271 KVWRALDGK-----------------------LCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALER 327 (480)
T ss_pred EEEEccchh-----------------------HHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHH
Confidence 999998887 68889999999999987722 2
Q ss_pred ---------CEEEEeeCCCcEEEEEccCC-eEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeC-Cceeeee-
Q 040361 254 ---------DIVISGSKDGTCVFHTLREG-RYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSIN-GKHLASS- 321 (413)
Q Consensus 254 ---------~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~- 321 (413)
..+++|+.|.++.+|+-... +++..+..| ...|+.+.|+||++++++++.|..|++||.+ |+.+..+
T Consensus 328 Y~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgH-q~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfR 406 (480)
T KOG0271|consen 328 YEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGH-QALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFR 406 (480)
T ss_pred HHHhhccCcceeEEecCCceEEEecccccccchhhhhch-hhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhh
Confidence 35999999999999997544 466666666 4589999999999999999999999999998 6666665
Q ss_pred ecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEccCCeEE-EEcCCCeEEEEE
Q 040361 322 ESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFL-AGTKDGCLLVYS 393 (413)
Q Consensus 322 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~dg~i~vw~ 393 (413)
+|-..|..++|+.|.++|++|+.|.++++||+++.++...+++|.+.|.++.|+|||..+ +|+.|..+++|.
T Consensus 407 GHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 407 GHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred hccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 599999999999999999999999999999999999999999999999999999998766 599999999995
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3e-47 Score=310.80 Aligned_cols=281 Identities=20% Similarity=0.310 Sum_probs=244.8
Q ss_pred eccCCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEE
Q 040361 90 LTTQLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVV 169 (413)
Q Consensus 90 ~~~~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~ 169 (413)
...+|+|+|..|++|+.|.++|+|+... +.+.....+|..-+.++.|+|||+.++. |+.||+|++||..+|+++
T Consensus 119 l~~~fsp~g~~l~tGsGD~TvR~WD~~T-----eTp~~t~KgH~~WVlcvawsPDgk~iAS-G~~dg~I~lwdpktg~~~ 192 (480)
T KOG0271|consen 119 LSVQFSPTGSRLVTGSGDTTVRLWDLDT-----ETPLFTCKGHKNWVLCVAWSPDGKKIAS-GSKDGSIRLWDPKTGQQI 192 (480)
T ss_pred EEEEecCCCceEEecCCCceEEeeccCC-----CCcceeecCCccEEEEEEECCCcchhhc-cccCCeEEEecCCCCCcc
Confidence 3457999999999999999999975322 2455556677888999999999998876 778999999999888765
Q ss_pred -EEeecCCCeEEEEEECC-----CCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCC
Q 040361 170 -QSIRQHRDVVSCVAVTT-----DGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDI 243 (413)
Q Consensus 170 -~~~~~h~~~v~~~~~~~-----~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 243 (413)
..+.+|...|++++|.| ..++|++++.||.|+|||+..+. ++..+.+|+.+
T Consensus 193 g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~-----------------------~~~~lsgHT~~ 249 (480)
T KOG0271|consen 193 GRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT-----------------------CVRTLSGHTAS 249 (480)
T ss_pred cccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce-----------------------EEEEeccCccc
Confidence 78899999999999977 57899999999999999998877 78899999999
Q ss_pred eEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEc-----------cCC----------------
Q 040361 244 ITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAAS-----------RHG---------------- 296 (413)
Q Consensus 244 i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~-----------~~~---------------- 296 (413)
|+|+.|--+ .++++|+.|++|++|+...|.+.+.+..| ...|+.++.+ |.+
T Consensus 250 VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGH-ahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~r 327 (480)
T KOG0271|consen 250 VTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGH-AHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALER 327 (480)
T ss_pred eEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhccc-chheeeeeccchhhhhccccccccccCCChHHHHHHHHHH
Confidence 999999655 48999999999999999999999999876 5578888776 223
Q ss_pred ---------cEEEEECCCCeEEEEEeCC-c-eee-eeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecC
Q 040361 297 ---------RIVLYGDDDLSLHLFSING-K-HLA-SSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSG 364 (413)
Q Consensus 297 ---------~~l~~~~~d~~i~i~d~~~-~-~~~-~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~ 364 (413)
..+++|+.|.++.+|+... + .+. ..+|..-|+.+.||||++++|+++.|.+|++||.++|+.+..|++
T Consensus 328 Y~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRG 407 (480)
T KOG0271|consen 328 YEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRG 407 (480)
T ss_pred HHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhh
Confidence 3499999999999999872 2 232 357889999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEEccCCeEE-EEcCCCeEEEEEecCCcccc
Q 040361 365 VGKIITSLAVTPEECFL-AGTKDGCLLVYSIENRRTSL 401 (413)
Q Consensus 365 ~~~~v~~~~~~~~~~~l-~~~~dg~i~vw~~~~~~~~~ 401 (413)
|-..|..++|+.|.+++ +|+.|.++++|++++.+...
T Consensus 408 Hv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~ 445 (480)
T KOG0271|consen 408 HVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQ 445 (480)
T ss_pred ccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecc
Confidence 99999999999998777 59999999999999987554
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.3e-47 Score=315.24 Aligned_cols=275 Identities=17% Similarity=0.227 Sum_probs=247.4
Q ss_pred eccCCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCC-CCEEEEeecCCCeEEEEEcCCCcE
Q 040361 90 LTTQLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPS-ENFLITCGNWENSFQVIALNDGRV 168 (413)
Q Consensus 90 ~~~~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~g~~d~~i~i~~~~~~~~ 168 (413)
..|.||++++.++||+.+|.+++| +.... ..+....+|...+.++.|+|. .+.-+++++.||++++|++++..+
T Consensus 179 s~~~fS~ds~~laT~swsG~~kvW----~~~~~-~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~ 253 (459)
T KOG0272|consen 179 SGCSFSRDSKHLATGSWSGLVKVW----SVPQC-NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETP 253 (459)
T ss_pred eeeEeecCCCeEEEeecCCceeEe----ecCCc-ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcc
Confidence 456789999999999999999995 43333 444556667888999999998 355555677799999999999999
Q ss_pred EEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEE
Q 040361 169 VQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLY 248 (413)
Q Consensus 169 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~ 248 (413)
+..+++|...|..++|+|+|++|+|++.|.+-++||++++. .+....||...|.+++
T Consensus 254 l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~-----------------------ElL~QEGHs~~v~~ia 310 (459)
T KOG0272|consen 254 LQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKS-----------------------ELLLQEGHSKGVFSIA 310 (459)
T ss_pred hhhhhcchhhheeeeecCCCceeeecccccchhhcccccch-----------------------hhHhhcccccccceeE
Confidence 99999999999999999999999999999999999999987 5667789999999999
Q ss_pred EecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCceeee--eecCCc
Q 040361 249 VSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKHLAS--SESNGR 326 (413)
Q Consensus 249 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~--~~~~~~ 326 (413)
|.+||.+++||+.|..-+|||+++|+++..+..|. .+|.+++|+|+|..+++|+.|++++|||++...... ..|..-
T Consensus 311 f~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~-k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nl 389 (459)
T KOG0272|consen 311 FQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHI-KEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNL 389 (459)
T ss_pred ecCCCceeeccCccchhheeecccCcEEEEecccc-cceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccch
Confidence 99999999999999999999999999999999864 589999999999999999999999999999544433 468899
Q ss_pred eeEEEecC-CCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEccCCeEE-EEcCCCeEEEEE
Q 040361 327 LNCLELSA-CGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFL-AGTKDGCLLVYS 393 (413)
Q Consensus 327 i~~~~~s~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~dg~i~vw~ 393 (413)
|+.+.|+| .|.+|++++.|++++||...++.+++.+.+|.+.|.++..++|+.++ +++.|.++++|.
T Consensus 390 VS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 390 VSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred hhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 99999999 68999999999999999999999999999999999999999998766 699999999995
No 4
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.8e-41 Score=266.64 Aligned_cols=271 Identities=23% Similarity=0.329 Sum_probs=235.2
Q ss_pred cCCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCC-----
Q 040361 92 TQLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDG----- 166 (413)
Q Consensus 92 ~~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~----- 166 (413)
-++++|++.++++++||.+.+|+.-...+....++. ..-+.+++|+|.+++++. |..|+...||++.+.
T Consensus 61 ~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~-----s~WVMtCA~sPSg~~VAc-GGLdN~Csiy~ls~~d~~g~ 134 (343)
T KOG0286|consen 61 MDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLP-----SSWVMTCAYSPSGNFVAC-GGLDNKCSIYPLSTRDAEGN 134 (343)
T ss_pred eEecCCcCeEEeeccCCeEEEEEcccccceeEEecC-----ceeEEEEEECCCCCeEEe-cCcCceeEEEeccccccccc
Confidence 356899999999999999999753221111111111 345789999999987766 555999999999754
Q ss_pred -cEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeE
Q 040361 167 -RVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIIT 245 (413)
Q Consensus 167 -~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 245 (413)
++.+.+.+|.+.+.|+.|.+| ..|+|+|.|.+..+||+++++ .+..+.+|.+.|.
T Consensus 135 ~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~-----------------------~~~~f~GH~gDV~ 190 (343)
T KOG0286|consen 135 VRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQ-----------------------QTQVFHGHTGDVM 190 (343)
T ss_pred ceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccce-----------------------EEEEecCCcccEE
Confidence 456788999999999999875 579999999999999999998 7888999999999
Q ss_pred EEEEec-CCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeC-Cceeeeee-
Q 040361 246 CLYVSV-ELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSIN-GKHLASSE- 322 (413)
Q Consensus 246 ~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~- 322 (413)
+++++| +++.+++|+.|+..++||++.+.+++++..| ...|+++.|.|+|.-+++|+.|++.++||++ ...+..+.
T Consensus 191 slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~gh-esDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~ 269 (343)
T KOG0286|consen 191 SLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGH-ESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSH 269 (343)
T ss_pred EEecCCCCCCeEEecccccceeeeeccCcceeEeeccc-ccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeecc
Confidence 999999 9999999999999999999999999999987 4689999999999999999999999999999 45555543
Q ss_pred --cCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEccCCeEE-EEcCCCeEEEEE
Q 040361 323 --SNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFL-AGTKDGCLLVYS 393 (413)
Q Consensus 323 --~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~dg~i~vw~ 393 (413)
...+|++++||..|++|++|..|..+.+||.-.++.+..+.+|++.|+++..+|||.-+ +|+.|.+++||.
T Consensus 270 ~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 270 DSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred CcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 34689999999999999999999999999999999999999999999999999999766 599999999994
No 5
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=6.7e-40 Score=278.27 Aligned_cols=354 Identities=21% Similarity=0.298 Sum_probs=267.4
Q ss_pred EEEecCCCCCCeEEEEeecCCcEEEEecCc-eEEEE------------------------------------Ee------
Q 040361 53 SIICSTRHQPSGIVYVGMLDSSIVLVNQGL-TLSVK------------------------------------MW------ 89 (413)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~------------------------------------~~------ 89 (413)
+++...+.|.+..++.|...|++++|+... +..+| +|
T Consensus 61 ~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~Sv 140 (603)
T KOG0318|consen 61 QVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSV 140 (603)
T ss_pred eeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCcc
Confidence 455667888888888888888899888444 11111 11
Q ss_pred ----------eccCCCCCCce-eeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeE
Q 040361 90 ----------LTTQLQSGGNF-TFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSF 158 (413)
Q Consensus 90 ----------~~~~~s~~~~~-l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i 158 (413)
+.++|-|.-++ +++|+.|+.+.++ +-+|.++.... -.|...+.++.|+|||.+++.+|+ ||.+
T Consensus 141 Gei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ff--eGPPFKFk~s~---r~HskFV~~VRysPDG~~Fat~gs-Dgki 214 (603)
T KOG0318|consen 141 GEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFF--EGPPFKFKSSF---REHSKFVNCVRYSPDGSRFATAGS-DGKI 214 (603)
T ss_pred ceeeccceeEeeeeccCCCceEEEeccCCCeEEEe--eCCCeeeeecc---cccccceeeEEECCCCCeEEEecC-CccE
Confidence 23345666654 6788888888875 23344333332 334678999999999999999888 9999
Q ss_pred EEEEcCCCcEEEEee---cCCCeEEEEEECCCCCEEEEccCCCcEEEEEecccccccc-----ccccceeecC-CCceee
Q 040361 159 QVIALNDGRVVQSIR---QHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEK-----RVRNMQIEAP-RKDYVI 229 (413)
Q Consensus 159 ~i~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~-----~~~~~~~~~~-~~~~~~ 229 (413)
.+||-.+|+.+..+. +|.+.|.+++|+||+..++|+|.|.+++|||+.+.+.... .+..++.+.. .++.++
T Consensus 215 ~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lI 294 (603)
T KOG0318|consen 215 YIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLI 294 (603)
T ss_pred EEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEE
Confidence 999999999999998 7999999999999999999999999999999988753221 1112222210 111111
Q ss_pred --------------ecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEE-------------------
Q 040361 230 --------------VETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYV------------------- 276 (413)
Q Consensus 230 --------------~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~------------------- 276 (413)
...+...+.+|...|+++..++++++|++|+.||.|.-||..++..-
T Consensus 295 tVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~ 374 (603)
T KOG0318|consen 295 TVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASES 374 (603)
T ss_pred EEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCC
Confidence 13367888999999999999999999999999999999998654221
Q ss_pred ------------EEEeC-------------------------------------------------CCCCceeeEEEccC
Q 040361 277 ------------RSLCH-------------------------------------------------PSGSALSKLAASRH 295 (413)
Q Consensus 277 ------------~~~~~-------------------------------------------------~~~~~v~~~~~~~~ 295 (413)
+.+.. +.+....+++++|+
T Consensus 375 ~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~ 454 (603)
T KOG0318|consen 375 GELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPD 454 (603)
T ss_pred CcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCC
Confidence 00000 00122356889999
Q ss_pred CcEEEEECCCCeEEEEEeCCcee----eeeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceE-EEecCCCCcEE
Q 040361 296 GRIVLYGDDDLSLHLFSINGKHL----ASSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVV-RRYSGVGKIIT 370 (413)
Q Consensus 296 ~~~l~~~~~d~~i~i~d~~~~~~----~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~-~~~~~~~~~v~ 370 (413)
+..+++|+.|+.|++|.+++..+ ....|.++++++++|||+.|||+|+..+.+.+||..+.+.. ..+.-|...|.
T Consensus 455 ~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~ 534 (603)
T KOG0318|consen 455 GSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKIN 534 (603)
T ss_pred CCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEE
Confidence 99999999999999999996443 33578999999999999999999999999999999987763 33445999999
Q ss_pred EEEEccCCeEEE-EcCCCeEEEEEecCCcccccccccccCCcC
Q 040361 371 SLAVTPEECFLA-GTKDGCLLVYSIENRRTSLPRNVKSKASIT 412 (413)
Q Consensus 371 ~~~~~~~~~~l~-~~~dg~i~vw~~~~~~~~~~~~~~~~~~i~ 412 (413)
+++|+|++.+++ |+.|.+|.||+++.+.......-.|...++
T Consensus 535 ~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn 577 (603)
T KOG0318|consen 535 CVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVN 577 (603)
T ss_pred EEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCce
Confidence 999999987775 999999999999987666555445554443
No 6
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=8.2e-41 Score=258.24 Aligned_cols=243 Identities=17% Similarity=0.252 Sum_probs=214.6
Q ss_pred cceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCc--EEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccc
Q 040361 133 GSQCFTTMQTPSENFLITCGNWENSFQVIALNDGR--VVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARA 210 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~ 210 (413)
.+.+..+...|+++.|+++| ...|++||+++++ ++.++++|...|+++.|..+|++++|||+||+++|||++...
T Consensus 40 dsqVNrLeiTpdk~~LAaa~--~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~- 116 (311)
T KOG0315|consen 40 DSQVNRLEITPDKKDLAAAG--NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLS- 116 (311)
T ss_pred ccceeeEEEcCCcchhhhcc--CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcc-
Confidence 45667777889999988877 6899999998765 589999999999999999999999999999999999998854
Q ss_pred cccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeE
Q 040361 211 PEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKL 290 (413)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~ 290 (413)
......|..+|+++..+|+...|++|.++|.|++||+.+..+.+.+.......+.++
T Consensus 117 -----------------------~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl 173 (311)
T KOG0315|consen 117 -----------------------CQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSL 173 (311)
T ss_pred -----------------------cchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeE
Confidence 444567889999999999999999999999999999999888888776667789999
Q ss_pred EEccCCcEEEEECCCCeEEEEEeCCceee--------eeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCC-ceEEE
Q 040361 291 AASRHGRIVLYGDDDLSLHLFSINGKHLA--------SSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSL-EVVRR 361 (413)
Q Consensus 291 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--------~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~-~~~~~ 361 (413)
.+.|+|.+++++...|..++|++-+.... ...|.+.+..+.+|||+++|++++.|.+++||+..+. +....
T Consensus 174 ~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~ 253 (311)
T KOG0315|consen 174 TVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELV 253 (311)
T ss_pred EEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEE
Confidence 99999999999999999999998632211 2357888999999999999999999999999999987 66678
Q ss_pred ecCCCCcEEEEEEccCCeEE-EEcCCCeEEEEEecCCcccc
Q 040361 362 YSGVGKIITSLAVTPEECFL-AGTKDGCLLVYSIENRRTSL 401 (413)
Q Consensus 362 ~~~~~~~v~~~~~~~~~~~l-~~~~dg~i~vw~~~~~~~~~ 401 (413)
+++|...+..++||.||.|| +|+.|+.+++|+++.++...
T Consensus 254 l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~ 294 (311)
T KOG0315|consen 254 LTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVR 294 (311)
T ss_pred eecCCceEEeeeeccCccEEEecCCCCceeecccccCceee
Confidence 88999999999999998777 69999999999999988554
No 7
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.3e-42 Score=284.75 Aligned_cols=254 Identities=16% Similarity=0.204 Sum_probs=225.0
Q ss_pred ecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCC--CCEEEEccCCCcEEEEEecccc
Q 040361 132 LGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTD--GSILATGSYDTTVMVWEVIRAR 209 (413)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~s~dg~i~iw~~~~~~ 209 (413)
...++..+.|+.+++.++. |+++|.+++|+..+...++++.+|.+.|.++.|+|. +..|+||+.||++++|++++..
T Consensus 174 d~rPis~~~fS~ds~~laT-~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~ 252 (459)
T KOG0272|consen 174 DTRPISGCSFSRDSKHLAT-GSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET 252 (459)
T ss_pred CCCcceeeEeecCCCeEEE-eecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc
Confidence 3556667777777776655 778999999999999999999999999999999996 6789999999999999998876
Q ss_pred ccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceee
Q 040361 210 APEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSK 289 (413)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~ 289 (413)
++..+.+|...|..++|+|+|++|+|++.|.+-++||++++..+...++|. ..|.+
T Consensus 253 -----------------------~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs-~~v~~ 308 (459)
T KOG0272|consen 253 -----------------------PLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHS-KGVFS 308 (459)
T ss_pred -----------------------chhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccc-cccce
Confidence 788999999999999999999999999999999999999999888888774 58999
Q ss_pred EEEccCCcEEEEECCCCeEEEEEeC-Cceeee-eecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCC
Q 040361 290 LAASRHGRIVLYGDDDLSLHLFSIN-GKHLAS-SESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGK 367 (413)
Q Consensus 290 ~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~ 367 (413)
++|.+||.++++|+.|..-++||++ +..+.. .+|..+|..++|+|+|..||+|+.|++++|||++..+.+.++.+|.+
T Consensus 309 iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n 388 (459)
T KOG0272|consen 309 IAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSN 388 (459)
T ss_pred eEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccc
Confidence 9999999999999999999999999 555554 46999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEccC-CeEE-EEcCCCeEEEEEecCCcccccccccccCCc
Q 040361 368 IITSLAVTPE-ECFL-AGTKDGCLLVYSIENRRTSLPRNVKSKASI 411 (413)
Q Consensus 368 ~v~~~~~~~~-~~~l-~~~~dg~i~vw~~~~~~~~~~~~~~~~~~i 411 (413)
-|+.+.|+|+ |++| +++.|+++++|.-.+...... -..|..+|
T Consensus 389 lVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ks-LaGHe~kV 433 (459)
T KOG0272|consen 389 LVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKS-LAGHEGKV 433 (459)
T ss_pred hhhheEecccCCeEEEEcccCcceeeecCCCcccchh-hcCCccce
Confidence 9999999995 7766 599999999999888754422 22444443
No 8
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-40 Score=260.61 Aligned_cols=271 Identities=22% Similarity=0.308 Sum_probs=225.6
Q ss_pred ceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCe
Q 040361 99 NFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDV 178 (413)
Q Consensus 99 ~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~ 178 (413)
..++++++|.++.+|...-+..+.+.+.....+|...+..+..++++++.++ +++|+.+++||+.+++..+.|.+|...
T Consensus 29 ~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS-~swD~~lrlWDl~~g~~t~~f~GH~~d 107 (315)
T KOG0279|consen 29 DILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALS-ASWDGTLRLWDLATGESTRRFVGHTKD 107 (315)
T ss_pred ceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEe-ccccceEEEEEecCCcEEEEEEecCCc
Confidence 5567777777777766444444455555556666777888888999988777 667999999999999999999999999
Q ss_pred EEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecC--CCCeEEEEEecC--CC
Q 040361 179 VSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGH--DDIITCLYVSVE--LD 254 (413)
Q Consensus 179 v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~i~~~~~~~~--~~ 254 (413)
|.+++|++|.+.+++|+.|.+|++|++.... ..+...+ .+.|+|+.|+|+ ..
T Consensus 108 Vlsva~s~dn~qivSGSrDkTiklwnt~g~c------------------------k~t~~~~~~~~WVscvrfsP~~~~p 163 (315)
T KOG0279|consen 108 VLSVAFSTDNRQIVSGSRDKTIKLWNTLGVC------------------------KYTIHEDSHREWVSCVRFSPNESNP 163 (315)
T ss_pred eEEEEecCCCceeecCCCcceeeeeeecccE------------------------EEEEecCCCcCcEEEEEEcCCCCCc
Confidence 9999999999999999999999999987654 3333333 788999999998 56
Q ss_pred EEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeC-CceeeeeecCCceeEEEec
Q 040361 255 IVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSIN-GKHLASSESNGRLNCLELS 333 (413)
Q Consensus 255 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~i~~~~~s 333 (413)
++++++.|++|++||+++.+....+..+. ..++.++++|||.++++|+.||.+.+||++ ++.+....+...|.+++|+
T Consensus 164 ~Ivs~s~DktvKvWnl~~~~l~~~~~gh~-~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fs 242 (315)
T KOG0279|consen 164 IIVSASWDKTVKVWNLRNCQLRTTFIGHS-GYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFS 242 (315)
T ss_pred EEEEccCCceEEEEccCCcchhhcccccc-ccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEec
Confidence 99999999999999999998888887764 589999999999999999999999999998 7777788899999999999
Q ss_pred CCCCEEEEeCCCCeEEEEECCCCceEEEec----CC-----CCcEEEEEEccCCe-EEEEcCCCeEEEEEecC
Q 040361 334 ACGQFLVCGGDQGQIVVRSMNSLEVVRRYS----GV-----GKIITSLAVTPEEC-FLAGTKDGCLLVYSIEN 396 (413)
Q Consensus 334 ~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~----~~-----~~~v~~~~~~~~~~-~l~~~~dg~i~vw~~~~ 396 (413)
|+.-.|+.+.. ..|+|||+.++..+..++ +. .-...+++|++||. +++|-.|+.|++|.+..
T Consensus 243 pnrywL~~at~-~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 243 PNRYWLCAATA-TSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred CCceeEeeccC-CceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEeec
Confidence 98766666644 469999999988876664 22 22457889999985 66899999999999863
No 9
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.1e-39 Score=257.78 Aligned_cols=275 Identities=18% Similarity=0.278 Sum_probs=230.7
Q ss_pred EEEecCCCCCCeEEEEeecCCcEEEEecCceEE-------EEEeeccCCCCCCceeeecCCCCccccCCCcCCCcccCCC
Q 040361 53 SIICSTRHQPSGIVYVGMLDSSIVLVNQGLTLS-------VKMWLTTQLQSGGNFTFSGSQDPFFGVGADILSPRNVGSP 125 (413)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~ 125 (413)
.+.+....+++..+..++.|+++++|+.-.... ..+.++|+|+|+|+++|+|+.|+...++........-...
T Consensus 57 Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~ 136 (343)
T KOG0286|consen 57 KIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVR 136 (343)
T ss_pred ceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccce
Confidence 456667788888999999999999999554433 2355899999999999999999999998644322222223
Q ss_pred Cccccee-cceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECC-CCCEEEEccCCCcEEEE
Q 040361 126 LAESFEL-GSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTT-DGSILATGSYDTTVMVW 203 (413)
Q Consensus 126 ~~~~~~~-~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~dg~i~iw 203 (413)
..+.+.. .+.+.++.|.. +..++. |+.|.+..+||+++|+.+..+.+|.+.|.+++++| +++.+++|+.|+..++|
T Consensus 137 v~r~l~gHtgylScC~f~d-D~~ilT-~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklW 214 (343)
T KOG0286|consen 137 VSRELAGHTGYLSCCRFLD-DNHILT-GSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLW 214 (343)
T ss_pred eeeeecCccceeEEEEEcC-CCceEe-cCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeee
Confidence 3333333 44444555554 555555 44499999999999999999999999999999999 99999999999999999
Q ss_pred EeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCC
Q 040361 204 EVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPS 283 (413)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 283 (413)
|++.+. .++.|.+|+..|++++|.|+|.-+++|+.|+++++||++..+.+..+....
T Consensus 215 D~R~~~-----------------------c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~ 271 (343)
T KOG0286|consen 215 DVRSGQ-----------------------CVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDS 271 (343)
T ss_pred eccCcc-----------------------eeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCc
Confidence 999988 799999999999999999999999999999999999999999988886432
Q ss_pred -CCceeeEEEccCCcEEEEECCCCeEEEEEeC-Cceeee-eecCCceeEEEecCCCCEEEEeCCCCeEEEEE
Q 040361 284 -GSALSKLAASRHGRIVLYGDDDLSLHLFSIN-GKHLAS-SESNGRLNCLELSACGQFLVCGGDQGQIVVRS 352 (413)
Q Consensus 284 -~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d 352 (413)
..+|++++|+..|++|++|..|..+.+||.- ++.+.. .+|+..|.|+..+|||.-+++|+.|..++||.
T Consensus 272 ~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 272 IICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 3689999999999999999999999999975 555444 57999999999999999999999999999994
No 10
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-39 Score=254.36 Aligned_cols=247 Identities=17% Similarity=0.284 Sum_probs=220.4
Q ss_pred eecceeEEEEecCCCCEEEEeecCCCeEEEEEcC-----CCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEe
Q 040361 131 ELGSQCFTTMQTPSENFLITCGNWENSFQVIALN-----DGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEV 205 (413)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~-----~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~ 205 (413)
.|.+.+..++..+.+..+++.++.|..+.+|++. .|..++.++||+..|..+..++||++.++++.|+++++||+
T Consensus 13 gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl 92 (315)
T KOG0279|consen 13 GHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDL 92 (315)
T ss_pred CCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEe
Confidence 3467788888888888888889999999999874 47788999999999999999999999999999999999999
Q ss_pred ccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCC-C
Q 040361 206 IRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPS-G 284 (413)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~ 284 (413)
.+++ +.+.|.+|...|.+++|++|.+.+++|+.|.+|++|+.. +.+..++.... .
T Consensus 93 ~~g~-----------------------~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~-g~ck~t~~~~~~~ 148 (315)
T KOG0279|consen 93 ATGE-----------------------STRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL-GVCKYTIHEDSHR 148 (315)
T ss_pred cCCc-----------------------EEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeec-ccEEEEEecCCCc
Confidence 9987 788899999999999999999999999999999999984 55555554443 6
Q ss_pred CceeeEEEccC--CcEEEEECCCCeEEEEEeCCceeee--eecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEE
Q 040361 285 SALSKLAASRH--GRIVLYGDDDLSLHLFSINGKHLAS--SESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVR 360 (413)
Q Consensus 285 ~~v~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~--~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~ 360 (413)
..|.++.|+|+ ..+|++++.|++|++||+++.++.. .+|.+.++.+++||||..+++|+.||.+.+||++.++.+.
T Consensus 149 ~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~ly 228 (315)
T KOG0279|consen 149 EWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLY 228 (315)
T ss_pred CcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeE
Confidence 78999999998 6899999999999999999777654 5789999999999999999999999999999999999988
Q ss_pred EecCCCCcEEEEEEccCCeEEEEcCCCeEEEEEecCCccccc
Q 040361 361 RYSGVGKIITSLAVTPEECFLAGTKDGCLLVYSIENRRTSLP 402 (413)
Q Consensus 361 ~~~~~~~~v~~~~~~~~~~~l~~~~dg~i~vw~~~~~~~~~~ 402 (413)
.+. |...|.+++|+|+...|+...+..|+|||+++++....
T Consensus 229 sl~-a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~ 269 (315)
T KOG0279|consen 229 SLE-AFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEE 269 (315)
T ss_pred ecc-CCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhh
Confidence 776 78899999999998888877777799999998765544
No 11
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.1e-38 Score=283.88 Aligned_cols=243 Identities=18% Similarity=0.278 Sum_probs=215.7
Q ss_pred cceeEEEEecCCCCEEEEeecCCCeEEEEEcCCC-------------------------------cEEEEeecCCCeEEE
Q 040361 133 GSQCFTTMQTPSENFLITCGNWENSFQVIALNDG-------------------------------RVVQSIRQHRDVVSC 181 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~-------------------------------~~~~~~~~h~~~v~~ 181 (413)
...+.++.+++++. ++|+|..|..|++|.+... ....++.+|.++|..
T Consensus 378 ~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg 456 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYG 456 (707)
T ss_pred CCcceeEeecCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceee
Confidence 34445555555555 8888999999999998631 123456799999999
Q ss_pred EEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeC
Q 040361 182 VAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSK 261 (413)
Q Consensus 182 ~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~ 261 (413)
+.|+|+.++|+++|+|+++++|.+.+.. .+..+++|..+|+.+.|+|.|-++||++.
T Consensus 457 ~sFsPd~rfLlScSED~svRLWsl~t~s-----------------------~~V~y~GH~~PVwdV~F~P~GyYFatas~ 513 (707)
T KOG0263|consen 457 CSFSPDRRFLLSCSEDSSVRLWSLDTWS-----------------------CLVIYKGHLAPVWDVQFAPRGYYFATASH 513 (707)
T ss_pred eeecccccceeeccCCcceeeeecccce-----------------------eEEEecCCCcceeeEEecCCceEEEecCC
Confidence 9999999999999999999999999887 78889999999999999999999999999
Q ss_pred CCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeC-Cceeee-eecCCceeEEEecCCCCEE
Q 040361 262 DGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSIN-GKHLAS-SESNGRLNCLELSACGQFL 339 (413)
Q Consensus 262 dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~-~~~~~~i~~~~~s~~~~~l 339 (413)
|++.++|......+++.+.+|. +.|.++.|+|+..++++|+.|.++++||+. |..+.. .+|.++|.+++|||+|++|
T Consensus 514 D~tArLWs~d~~~PlRifaghl-sDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~L 592 (707)
T KOG0263|consen 514 DQTARLWSTDHNKPLRIFAGHL-SDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYL 592 (707)
T ss_pred CceeeeeecccCCchhhhcccc-cccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceE
Confidence 9999999999999999998874 589999999999999999999999999998 555444 5799999999999999999
Q ss_pred EEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEccCCeEE-EEcCCCeEEEEEecCCccc
Q 040361 340 VCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFL-AGTKDGCLLVYSIENRRTS 400 (413)
Q Consensus 340 ~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~dg~i~vw~~~~~~~~ 400 (413)
++|+.||.|.+||+.+++.+..+.+|.+.|.++.|+.||.++ +|+.|.+|++||+......
T Consensus 593 aSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 593 ASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIEL 654 (707)
T ss_pred eecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccc
Confidence 999999999999999999999999999999999999998766 5999999999999765433
No 12
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1e-36 Score=269.47 Aligned_cols=330 Identities=18% Similarity=0.270 Sum_probs=269.6
Q ss_pred EEEEecCCCCCCeEEEEeecCCcEEEEecCceEEEEEe-------eccCCCCCCceeeecCCC-CccccCCCcCCCcccC
Q 040361 52 TSIICSTRHQPSGIVYVGMLDSSIVLVNQGLTLSVKMW-------LTTQLQSGGNFTFSGSQD-PFFGVGADILSPRNVG 123 (413)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~s~~~~~l~~~~~d-~~~~~~~~~~~~~~~~ 123 (413)
..+.++.+|+...++.++..++...|+....-.-++.. .+..++..|+.++.|+.. |.+.+|. |....
T Consensus 266 ~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVwe--WqsEs-- 341 (893)
T KOG0291|consen 266 SKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWE--WQSES-- 341 (893)
T ss_pred cceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEE--eeccc--
Confidence 45677889999999999999999999987765554433 344688889999877654 7888873 54432
Q ss_pred CCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEE
Q 040361 124 SPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVW 203 (413)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw 203 (413)
.+.+.-.|-..+.++.++|||+++++ |+.||.|+|||..+|-+..++..|+..|+.+.|+..++.+++.+-||+|+.|
T Consensus 342 -YVlKQQgH~~~i~~l~YSpDgq~iaT-G~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAw 419 (893)
T KOG0291|consen 342 -YVLKQQGHSDRITSLAYSPDGQLIAT-GAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAW 419 (893)
T ss_pred -eeeeccccccceeeEEECCCCcEEEe-ccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEee
Confidence 22333345677889999999998887 5559999999999999999999999999999999999999999999999999
Q ss_pred EeccccccccccccceeecCCCceeeecCceeeeecC-CCCeEEEEEecCCCEEEEeeCCC-cEEEEEccCCeEEEEEeC
Q 040361 204 EVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGH-DDIITCLYVSVELDIVISGSKDG-TCVFHTLREGRYVRSLCH 281 (413)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~i~~~~~~~~~~~l~s~~~dg-~i~vwd~~~~~~~~~~~~ 281 (413)
|+...+ ..+++... .-...|++..|.|.++.+|+.|. .|++|++++|+.+-.+.+
T Consensus 420 DlkRYr-----------------------NfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsG 476 (893)
T KOG0291|consen 420 DLKRYR-----------------------NFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSG 476 (893)
T ss_pred eecccc-----------------------eeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcC
Confidence 998876 34444332 23467899999999999999887 599999999999999998
Q ss_pred CCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCc--eeeeeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceE
Q 040361 282 PSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGK--HLASSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVV 359 (413)
Q Consensus 282 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~ 359 (413)
| ..+|.+++|+|.+..|++++-|.+|++||+-.. .+........+..++|+|+|+-|++++-||.|.+||...+..+
T Consensus 477 H-EgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~ 555 (893)
T KOG0291|consen 477 H-EGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQV 555 (893)
T ss_pred C-CCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceee
Confidence 7 469999999999999999999999999999744 6667788889999999999999999999999999999876655
Q ss_pred EEecC--------------------CCCcEEEEEEccCCe-EEEEcCCCeEEEEEecCCcccccccccccCCc
Q 040361 360 RRYSG--------------------VGKIITSLAVTPEEC-FLAGTKDGCLLVYSIENRRTSLPRNVKSKASI 411 (413)
Q Consensus 360 ~~~~~--------------------~~~~v~~~~~~~~~~-~l~~~~dg~i~vw~~~~~~~~~~~~~~~~~~i 411 (413)
..+.+ .....+.+++++||. +++|+....|++|++.++-......+.++..+
T Consensus 556 ~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sL 628 (893)
T KOG0291|consen 556 GSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQISDNRSL 628 (893)
T ss_pred ccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEeccccch
Confidence 43321 135789999999976 55899999999999998755544444444333
No 13
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=5.2e-39 Score=264.75 Aligned_cols=274 Identities=20% Similarity=0.237 Sum_probs=233.4
Q ss_pred cCCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEE
Q 040361 92 TQLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQS 171 (413)
Q Consensus 92 ~~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~ 171 (413)
..+.|+|+.|++|++.|.+.+| +...+. ...-...|...|.++.|++++..++. |+.+|.|++|+.+- ..++.
T Consensus 102 v~WtPeGRRLltgs~SGEFtLW----Ng~~fn-FEtilQaHDs~Vr~m~ws~~g~wmiS-gD~gG~iKyWqpnm-nnVk~ 174 (464)
T KOG0284|consen 102 VRWTPEGRRLLTGSQSGEFTLW----NGTSFN-FETILQAHDSPVRTMKWSHNGTWMIS-GDKGGMIKYWQPNM-NNVKI 174 (464)
T ss_pred EEEcCCCceeEeecccccEEEe----cCceee-HHHHhhhhcccceeEEEccCCCEEEE-cCCCceEEecccch-hhhHH
Confidence 3569999999999999999995 332221 11122346788999999999998887 77799999999754 44455
Q ss_pred eec-CCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEe
Q 040361 172 IRQ-HRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVS 250 (413)
Q Consensus 172 ~~~-h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~ 250 (413)
+++ |...|++++|+|+...++++|.||+|+|||....+ ....+.+|.-.|.+++|+
T Consensus 175 ~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~k-----------------------ee~vL~GHgwdVksvdWH 231 (464)
T KOG0284|consen 175 IQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPK-----------------------EERVLRGHGWDVKSVDWH 231 (464)
T ss_pred hhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCc-----------------------hhheeccCCCCcceeccC
Confidence 555 55999999999999999999999999999998776 566779999999999999
Q ss_pred cCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeC-Cceeee-eecCCcee
Q 040361 251 VELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSIN-GKHLAS-SESNGRLN 328 (413)
Q Consensus 251 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~-~~~~~~i~ 328 (413)
|...++++|+.|..|++||.+++.++.++..| ...|..+.|++++++|++++.|..+++||++ -+.+.. ..|...++
T Consensus 232 P~kgLiasgskDnlVKlWDprSg~cl~tlh~H-KntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~ 310 (464)
T KOG0284|consen 232 PTKGLIASGSKDNLVKLWDPRSGSCLATLHGH-KNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVT 310 (464)
T ss_pred CccceeEEccCCceeEeecCCCcchhhhhhhc-cceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhhe
Confidence 99999999999999999999999999999877 4689999999999999999999999999999 334433 46999999
Q ss_pred EEEecCC-CCEEEEeCCCCeEEEEECCCCceEEEec-CCCCcEEEEEEccCCeEEE-EcCCCeEEEEEecC
Q 040361 329 CLELSAC-GQFLVCGGDQGQIVVRSMNSLEVVRRYS-GVGKIITSLAVTPEECFLA-GTKDGCLLVYSIEN 396 (413)
Q Consensus 329 ~~~~s~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~-~~~dg~i~vw~~~~ 396 (413)
++.|+|- ..+|.+|+.||.|..|.+...+++..+. +|...|++++|+|-|.+++ |+.|.++++|.-..
T Consensus 311 ~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~r 381 (464)
T KOG0284|consen 311 SLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNR 381 (464)
T ss_pred eeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccCC
Confidence 9999996 4688899999999999998667766664 7999999999999999885 99999999997543
No 14
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.4e-36 Score=264.00 Aligned_cols=318 Identities=20% Similarity=0.267 Sum_probs=265.2
Q ss_pred EEEecCCCCCCeEEEEeecCCcEEEEecC------------------------ceE---------EEEEee--------c
Q 040361 53 SIICSTRHQPSGIVYVGMLDSSIVLVNQG------------------------LTL---------SVKMWL--------T 91 (413)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~---------~~~~~~--------~ 91 (413)
.+....+..++.-+++-+.||.+++|... ... .-+.|. +
T Consensus 191 ~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvta 270 (893)
T KOG0291|consen 191 YVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTA 270 (893)
T ss_pred ceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceee
Confidence 44455566666678888999999999866 000 112232 2
Q ss_pred cCCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceec-ceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEE
Q 040361 92 TQLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELG-SQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQ 170 (413)
Q Consensus 92 ~~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~ 170 (413)
+.|.+..+.|++|-..|.+.++. .+.. .+...+... ..+.++.++..|+.+++.++.=|.+-||++++...+-
T Consensus 271 a~fH~~t~~lvvgFssG~f~Lye--lP~f----~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVl 344 (893)
T KOG0291|consen 271 AAFHKGTNLLVVGFSSGEFGLYE--LPDF----NLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVL 344 (893)
T ss_pred eeccCCceEEEEEecCCeeEEEe--cCCc----eEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceee
Confidence 35888888999999999988862 2111 122223333 6678899999999999988777899999999999999
Q ss_pred EeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEe
Q 040361 171 SIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVS 250 (413)
Q Consensus 171 ~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~ 250 (413)
+.++|...+++++++|||++++||++||.|++||...+- +..++..|+..|+.+.|+
T Consensus 345 KQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sgf-----------------------C~vTFteHts~Vt~v~f~ 401 (893)
T KOG0291|consen 345 KQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGF-----------------------CFVTFTEHTSGVTAVQFT 401 (893)
T ss_pred eccccccceeeEEECCCCcEEEeccCCCcEEEEeccCce-----------------------EEEEeccCCCceEEEEEE
Confidence 999999999999999999999999999999999999887 899999999999999999
Q ss_pred cCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCC-eEEEEEeCC-ceeee-eecCCce
Q 040361 251 VELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDL-SLHLFSING-KHLAS-SESNGRL 327 (413)
Q Consensus 251 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~i~d~~~-~~~~~-~~~~~~i 327 (413)
..++.+++++.||+|+.||+...+..+++..+......+++..|.|.++++|+.|. .|++|++++ +.+.. .+|+++|
T Consensus 402 ~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPV 481 (893)
T KOG0291|consen 402 ARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPV 481 (893)
T ss_pred ecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcc
Confidence 99999999999999999999999999999988877889999999999999999886 699999994 44443 5899999
Q ss_pred eEEEecCCCCEEEEeCCCCeEEEEECCCC-ceEEEecCCCCcEEEEEEccCCeEE-EEcCCCeEEEEEecCCccc
Q 040361 328 NCLELSACGQFLVCGGDQGQIVVRSMNSL-EVVRRYSGVGKIITSLAVTPEECFL-AGTKDGCLLVYSIENRRTS 400 (413)
Q Consensus 328 ~~~~~s~~~~~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~dg~i~vw~~~~~~~~ 400 (413)
.+++|+|++..|++|+.|.+|++||+-.. ..+.++. +...+..++|.|||+-+ +++.||.|.+||.+.+...
T Consensus 482 s~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~ 555 (893)
T KOG0291|consen 482 SGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQV 555 (893)
T ss_pred eeeEEccccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceee
Confidence 99999999999999999999999999764 3455565 66789999999998655 5999999999999876544
No 15
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=6e-35 Score=248.30 Aligned_cols=340 Identities=14% Similarity=0.202 Sum_probs=256.2
Q ss_pred EEEecCCCCCCeEEEEeecCCcEEEEecCceEE--------EEEeeccCCCCCCceeeecCCCCccccCCCcCCCcccCC
Q 040361 53 SIICSTRHQPSGIVYVGMLDSSIVLVNQGLTLS--------VKMWLTTQLQSGGNFTFSGSQDPFFGVGADILSPRNVGS 124 (413)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~ 124 (413)
.++...+.|.+|+..+...+++.+..-.+.... .+......|||||.++++.+.|+.+.+++-.... .-.
T Consensus 149 ~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge--~vg 226 (603)
T KOG0318|consen 149 RINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGE--KVG 226 (603)
T ss_pred eEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCcc--EEE
Confidence 466778888899877666665555555444443 3345566799999999999999999997532221 122
Q ss_pred CCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEE---------------------------------
Q 040361 125 PLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQS--------------------------------- 171 (413)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~--------------------------------- 171 (413)
.+.....|.+.++++.|+||+..++.++. |.+++|||+.+.+++++
T Consensus 227 ~l~~~~aHkGsIfalsWsPDs~~~~T~Sa-Dkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~l 305 (603)
T KOG0318|consen 227 ELEDSDAHKGSIFALSWSPDSTQFLTVSA-DKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYL 305 (603)
T ss_pred EecCCCCccccEEEEEECCCCceEEEecC-CceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEe
Confidence 33335677899999999999999998766 99999999876654433
Q ss_pred ----------eecCCCeEEEEEECCCCCEEEEccCCCcEEEEEecccccccc-------cccccee--------------
Q 040361 172 ----------IRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEK-------RVRNMQI-------------- 220 (413)
Q Consensus 172 ----------~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~-------~~~~~~~-------------- 220 (413)
+.+|...|+++..+||+++|++|+.||.|.-|+..++..... .+..+..
T Consensus 306 n~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~ 385 (603)
T KOG0318|consen 306 NPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDT 385 (603)
T ss_pred cccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCe
Confidence 348999999999999999999999999999999987653311 0000000
Q ss_pred -------------------ec--------CCCcee--eecCceeeeecCC--------CCeEEEEEecCCCEEEEeeCCC
Q 040361 221 -------------------EA--------PRKDYV--IVETPFHILCGHD--------DIITCLYVSVELDIVISGSKDG 263 (413)
Q Consensus 221 -------------------~~--------~~~~~~--~~~~~~~~~~~h~--------~~i~~~~~~~~~~~l~s~~~dg 263 (413)
+. +..... .....+..++.+. -...+++++|+++.++.|++||
T Consensus 386 l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dg 465 (603)
T KOG0318|consen 386 LRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDG 465 (603)
T ss_pred EEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccc
Confidence 00 000000 0111233333332 2457899999999999999999
Q ss_pred cEEEEEccCCeEEEE-EeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCceeee---eecCCceeEEEecCCCCEE
Q 040361 264 TCVFHTLREGRYVRS-LCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKHLAS---SESNGRLNCLELSACGQFL 339 (413)
Q Consensus 264 ~i~vwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~---~~~~~~i~~~~~s~~~~~l 339 (413)
.|++|.+..+..... ....+..+++.++++|++.+|+++...+.+.+||...+.... .-|...|.+++|+|+..++
T Consensus 466 kvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~v 545 (603)
T KOG0318|consen 466 KVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLV 545 (603)
T ss_pred eEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEE
Confidence 999999976553322 233446689999999999999999999999999999666543 2488999999999999999
Q ss_pred EEeCCCCeEEEEECCCCce-EEEecCCCCcEEEEEEccCCeEEEEcCCCeEEEEEec
Q 040361 340 VCGGDQGQIVVRSMNSLEV-VRRYSGVGKIITSLAVTPEECFLAGTKDGCLLVYSIE 395 (413)
Q Consensus 340 ~~~~~dg~i~v~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~dg~i~vw~~~ 395 (413)
|+|+-|-.|.||++..... +.....|...|+.+.|-.+..+++.+.|-+|++|++.
T Consensus 546 ATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 546 ATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred EeccccceEEEEEccChhhheEeccccccCceeEEEecCceEEeccCcceeEEeccc
Confidence 9999999999999987543 3444578888999999988899999999999999974
No 16
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.3e-35 Score=232.24 Aligned_cols=279 Identities=18% Similarity=0.256 Sum_probs=223.7
Q ss_pred EEeeccCCCCC-CceeeecCCCCccccCCCcCCCcc--cCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEc
Q 040361 87 KMWLTTQLQSG-GNFTFSGSQDPFFGVGADILSPRN--VGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIAL 163 (413)
Q Consensus 87 ~~~~~~~~s~~-~~~l~~~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~ 163 (413)
|+|.. +++|. |..+|+++.|+.+++|.... ++. ....+.. .|...+.+++|+|.|++|++ |+.|.++.||.-
T Consensus 16 r~W~~-awhp~~g~ilAscg~Dk~vriw~~~~-~~s~~ck~vld~--~hkrsVRsvAwsp~g~~La~-aSFD~t~~Iw~k 90 (312)
T KOG0645|consen 16 RVWSV-AWHPGKGVILASCGTDKAVRIWSTSS-GDSWTCKTVLDD--GHKRSVRSVAWSPHGRYLAS-ASFDATVVIWKK 90 (312)
T ss_pred cEEEE-EeccCCceEEEeecCCceEEEEecCC-CCcEEEEEeccc--cchheeeeeeecCCCcEEEE-eeccceEEEeec
Confidence 34432 34665 78899999999999986442 111 1111221 46788999999999996665 666999999986
Q ss_pred CCC--cEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCC
Q 040361 164 NDG--RVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHD 241 (413)
Q Consensus 164 ~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 241 (413)
..+ +++..++||..+|.|++|+++|++|||+++|++|-+|.+..... ..+...+++|.
T Consensus 91 ~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddE--------------------fec~aVL~~Ht 150 (312)
T KOG0645|consen 91 EDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDE--------------------FECIAVLQEHT 150 (312)
T ss_pred CCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCc--------------------EEEEeeecccc
Confidence 543 67899999999999999999999999999999999999985541 12678899999
Q ss_pred CCeEEEEEecCCCEEEEeeCCCcEEEEEcc---CCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCcee
Q 040361 242 DIITCLYVSVELDIVISGSKDGTCVFHTLR---EGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKHL 318 (413)
Q Consensus 242 ~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 318 (413)
..|..+.|+|...+|++++.|.+|++|+-. .-.+..++..++ ..|.+++|++.|..+++++.|+++++|-... -
T Consensus 151 qDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~-~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~--~ 227 (312)
T KOG0645|consen 151 QDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHE-NTVWSLAFDNIGSRLVSCSDDGTVSIWRLYT--D 227 (312)
T ss_pred ccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCcc-ceEEEEEecCCCceEEEecCCcceEeeeecc--C
Confidence 999999999999999999999999999866 345678888775 4899999999999999999999999998651 1
Q ss_pred eeeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCC------ceE-EEecCCCCcEEEEEEccC--CeEEEEcCCCeE
Q 040361 319 ASSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSL------EVV-RRYSGVGKIITSLAVTPE--ECFLAGTKDGCL 389 (413)
Q Consensus 319 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~------~~~-~~~~~~~~~v~~~~~~~~--~~~l~~~~dg~i 389 (413)
....+...+..++|. ...|++++.|+.|++|.-... +++ ..-..|...|+++.|.|. +++++|+.||.|
T Consensus 228 ~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v 305 (312)
T KOG0645|consen 228 LSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIV 305 (312)
T ss_pred cchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceE
Confidence 123456788899997 568999999999999976542 122 123468889999999994 678889999999
Q ss_pred EEEEec
Q 040361 390 LVYSIE 395 (413)
Q Consensus 390 ~vw~~~ 395 (413)
++|.+.
T Consensus 306 ~~W~l~ 311 (312)
T KOG0645|consen 306 NFWELE 311 (312)
T ss_pred EEEEec
Confidence 999985
No 17
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.6e-36 Score=246.73 Aligned_cols=280 Identities=20% Similarity=0.276 Sum_probs=231.8
Q ss_pred CCCCCceeeecCCCCccccCCCcCCCcccCCCCcccc-eecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEe
Q 040361 94 LQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESF-ELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSI 172 (413)
Q Consensus 94 ~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~ 172 (413)
++..++-++.|.-.+..+.... |-++. ++...+ ++...+..+.+.|+ ..++++++.|++|++||..+++....+
T Consensus 72 l~~~~~el~~g~pt~~~~~~~~-wipRp---~l~~~l~g~r~~vt~v~~hp~-~~~v~~as~d~tikv~D~~tg~~e~~L 146 (406)
T KOG0295|consen 72 LDETGDELIAGDPTGSKRTPAL-WIPRP---NLVQKLAGHRSSVTRVIFHPS-EALVVSASEDATIKVFDTETGELERSL 146 (406)
T ss_pred hcccccccccCCCCcCccChhh-cCCCC---CchhhhhccccceeeeeeccC-ceEEEEecCCceEEEEEccchhhhhhh
Confidence 4444455555544444443322 43331 122222 23445555655554 555666777999999999999999999
Q ss_pred ecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecC
Q 040361 173 RQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVE 252 (413)
Q Consensus 173 ~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~ 252 (413)
++|.+.|..++|+..|++|++++.|-.+++||.++.. .++..+.+|+..|.+++|-|.
T Consensus 147 rGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~----------------------~c~ks~~gh~h~vS~V~f~P~ 204 (406)
T KOG0295|consen 147 RGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFF----------------------RCIKSLIGHEHGVSSVFFLPL 204 (406)
T ss_pred hccccceeEEEEecCccEEEecCCccchhheeHHHHH----------------------HHHHHhcCcccceeeEEEEec
Confidence 9999999999999999999999999999999998754 267788899999999999999
Q ss_pred CCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCce--eeeeecCCceeEE
Q 040361 253 LDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKH--LASSESNGRLNCL 330 (413)
Q Consensus 253 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~i~~~ 330 (413)
+.++++++.|.+|+.|++.++.++.++..+. ..|..+..+.||.++++++.|.+|++|-+..+. .....|+.++.++
T Consensus 205 gd~ilS~srD~tik~We~~tg~cv~t~~~h~-ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci 283 (406)
T KOG0295|consen 205 GDHILSCSRDNTIKAWECDTGYCVKTFPGHS-EWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECI 283 (406)
T ss_pred CCeeeecccccceeEEecccceeEEeccCch-HhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEE
Confidence 9999999999999999999999999999875 489999999999999999999999999998663 3345788999999
Q ss_pred EecCC---------------CCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEccCCeEE-EEcCCCeEEEEEe
Q 040361 331 ELSAC---------------GQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFL-AGTKDGCLLVYSI 394 (413)
Q Consensus 331 ~~s~~---------------~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~dg~i~vw~~ 394 (413)
+|.|. +.++++++.|++|++||+.++.++.++.+|...|.+++|+|.|+|+ ++.+|+++++||+
T Consensus 284 ~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl 363 (406)
T KOG0295|consen 284 AWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDL 363 (406)
T ss_pred EecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEe
Confidence 99873 3699999999999999999999999999999999999999999887 5999999999999
Q ss_pred cCCcccc
Q 040361 395 ENRRTSL 401 (413)
Q Consensus 395 ~~~~~~~ 401 (413)
++++...
T Consensus 364 ~~~~cmk 370 (406)
T KOG0295|consen 364 KNLQCMK 370 (406)
T ss_pred ccceeee
Confidence 9976553
No 18
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.5e-36 Score=253.30 Aligned_cols=283 Identities=16% Similarity=0.228 Sum_probs=238.2
Q ss_pred ccCCCCCCc-eeeecCCCCccccCCCcCCCcc------cCCCC---cccceecceeEEEEecCCCCEEEEeecCCCeEEE
Q 040361 91 TTQLQSGGN-FTFSGSQDPFFGVGADILSPRN------VGSPL---AESFELGSQCFTTMQTPSENFLITCGNWENSFQV 160 (413)
Q Consensus 91 ~~~~s~~~~-~l~~~~~d~~~~~~~~~~~~~~------~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i 160 (413)
.|+++|.-. .+++|+.|.+.++|...++... +..+. .+...-...+.++.|+.+|..|+. |+.||.++|
T Consensus 183 ~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~Lat-G~~~G~~ri 261 (524)
T KOG0273|consen 183 ICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLAT-GSEDGEARI 261 (524)
T ss_pred EEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEE-eecCcEEEE
Confidence 355677776 8899999999999875542111 11111 122233567899999999988776 777999999
Q ss_pred EEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecC
Q 040361 161 IALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGH 240 (413)
Q Consensus 161 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 240 (413)
|+. +|..+.++..|.++|.++.|+.+|++|++++.|+++.+||..++. ..+.+.-|
T Consensus 262 w~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~-----------------------~~q~f~~~ 317 (524)
T KOG0273|consen 262 WNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGT-----------------------VKQQFEFH 317 (524)
T ss_pred Eec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCce-----------------------EEEeeeec
Confidence 997 678888898999999999999999999999999999999998887 56677778
Q ss_pred CCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeC-Cceee
Q 040361 241 DDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSIN-GKHLA 319 (413)
Q Consensus 241 ~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~ 319 (413)
..+-..+.|-.+ ..+++++.|+.|+++.+....++.++.+|+ ..|.++.|+|.+.+|++++.|+++++|+.. +....
T Consensus 318 s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~-g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~ 395 (524)
T KOG0273|consen 318 SAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHH-GEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVH 395 (524)
T ss_pred cCCccceEEecC-ceEeecCCCceEEEEEecCCCcceeeeccc-CceEEEEECCCCceEEEecCCCeeEeeecCCCcchh
Confidence 888677888544 578999999999999999999999999865 589999999999999999999999999986 33333
Q ss_pred e-eecCCceeEEEecCCC---------CEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEccCCeEEE-EcCCCe
Q 040361 320 S-SESNGRLNCLELSACG---------QFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFLA-GTKDGC 388 (413)
Q Consensus 320 ~-~~~~~~i~~~~~s~~~---------~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~dg~ 388 (413)
. ..|...|..+.|+|+| ..+++++.|++|++||+..+.++..|..|..+|.+++|+|+|++++ |+.||.
T Consensus 396 ~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~ 475 (524)
T KOG0273|consen 396 DLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGC 475 (524)
T ss_pred hhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCe
Confidence 3 4688889999999864 5799999999999999999999999999999999999999998885 999999
Q ss_pred EEEEEecCCccc
Q 040361 389 LLVYSIENRRTS 400 (413)
Q Consensus 389 i~vw~~~~~~~~ 400 (413)
|.+|+.++++..
T Consensus 476 V~iws~~~~~l~ 487 (524)
T KOG0273|consen 476 VHIWSTKTGKLV 487 (524)
T ss_pred eEeccccchhee
Confidence 999999988654
No 19
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=7e-36 Score=272.40 Aligned_cols=277 Identities=23% Similarity=0.381 Sum_probs=235.4
Q ss_pred cCCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEc-CCCcEEE
Q 040361 92 TQLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIAL-NDGRVVQ 170 (413)
Q Consensus 92 ~~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~-~~~~~~~ 170 (413)
..|+++|+.+++++.|+.+++|....... .......++...|..++|+|++.+++. ++.|++|+|||+ ..+..++
T Consensus 165 ~~fs~~g~~l~~~~~~~~i~~~~~~~~~~---~~~~~l~~h~~~v~~~~fs~d~~~l~s-~s~D~tiriwd~~~~~~~~~ 240 (456)
T KOG0266|consen 165 VDFSPDGRALAAASSDGLIRIWKLEGIKS---NLLRELSGHTRGVSDVAFSPDGSYLLS-GSDDKTLRIWDLKDDGRNLK 240 (456)
T ss_pred EEEcCCCCeEEEccCCCcEEEeecccccc---hhhccccccccceeeeEECCCCcEEEE-ecCCceEEEeeccCCCeEEE
Confidence 46899999999999999999975311111 122222567888999999999997666 556999999999 6668999
Q ss_pred EeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEe
Q 040361 171 SIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVS 250 (413)
Q Consensus 171 ~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~ 250 (413)
++.+|...|++++|+|+++++++|+.|++|++||+++++ +...+.+|.+.|++++|+
T Consensus 241 ~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~-----------------------~~~~l~~hs~~is~~~f~ 297 (456)
T KOG0266|consen 241 TLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE-----------------------CVRKLKGHSDGISGLAFS 297 (456)
T ss_pred EecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCe-----------------------EEEeeeccCCceEEEEEC
Confidence 999999999999999999999999999999999999977 789999999999999999
Q ss_pred cCCCEEEEeeCCCcEEEEEccCCe--EEEEEeCCCCC-ceeeEEEccCCcEEEEECCCCeEEEEEeC-Cceeeee-ecCC
Q 040361 251 VELDIVISGSKDGTCVFHTLREGR--YVRSLCHPSGS-ALSKLAASRHGRIVLYGDDDLSLHLFSIN-GKHLASS-ESNG 325 (413)
Q Consensus 251 ~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~-~~~~ 325 (413)
++++++++++.|+.|++||+.++. +...+...... .++.+.|+|++.++++++.|+.+++||+. +...... .+..
T Consensus 298 ~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~ 377 (456)
T KOG0266|consen 298 PDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSN 377 (456)
T ss_pred CCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCC
Confidence 999999999999999999999999 45666655544 68999999999999999999999999998 4433332 3333
Q ss_pred ---ceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCC-CCcEEEEEEccCCeEEE-Ec--CCCeEEEEEec
Q 040361 326 ---RLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGV-GKIITSLAVTPEECFLA-GT--KDGCLLVYSIE 395 (413)
Q Consensus 326 ---~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~-~~--~dg~i~vw~~~ 395 (413)
.+.+...++.+.++++|+.|+.|++||+.++..+..+.+| ...+..+.++|...+++ ++ .|+.+++|..+
T Consensus 378 ~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 378 LVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred cceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 3445556788999999999999999999999999999999 88999999999976664 44 79999999864
No 20
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.4e-37 Score=252.51 Aligned_cols=277 Identities=16% Similarity=0.231 Sum_probs=227.2
Q ss_pred cCCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEE
Q 040361 92 TQLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQS 171 (413)
Q Consensus 92 ~~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~ 171 (413)
++||++|++||+++.|.+..+|....+.+ -.......+|...+..+.|+||++++++||. |..+.+||..+|.....
T Consensus 230 l~FS~nGkyLAsaSkD~Taiiw~v~~d~~--~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~-~e~~~lwDv~tgd~~~~ 306 (519)
T KOG0293|consen 230 LQFSHNGKYLASASKDSTAIIWIVVYDVH--FKLKKTLVGHSQPVSYIMWSPDDRYLLACGF-DEVLSLWDVDTGDLRHL 306 (519)
T ss_pred EEEcCCCeeEeeccCCceEEEEEEecCcc--eeeeeeeecccCceEEEEECCCCCeEEecCc-hHheeeccCCcchhhhh
Confidence 46999999999999999999875433332 2334455667888999999999999999998 78899999999998877
Q ss_pred eec-CCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCC-CCeEEEEE
Q 040361 172 IRQ-HRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHD-DIITCLYV 249 (413)
Q Consensus 172 ~~~-h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~i~~~~~ 249 (413)
+.. |...+.+++|.|||..+++|+.|+++..||++... ....++-. ..|.+++.
T Consensus 307 y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~------------------------~~~W~gvr~~~v~dlai 362 (519)
T KOG0293|consen 307 YPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI------------------------LGNWEGVRDPKVHDLAI 362 (519)
T ss_pred cccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch------------------------hhcccccccceeEEEEE
Confidence 753 56899999999999999999999999999997654 22233322 46899999
Q ss_pred ecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCceeee--eecC--C
Q 040361 250 SVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKHLAS--SESN--G 325 (413)
Q Consensus 250 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~--~~~~--~ 325 (413)
.+||+++++.+.|..|++++.++......+..+ .++++++.+.+++++++.-.+..+++||++...+.. .+|. .
T Consensus 363 t~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~--~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~ 440 (519)
T KOG0293|consen 363 TYDGKYVLLVTVDKKIRLYNREARVDRGLISEE--QPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGH 440 (519)
T ss_pred cCCCcEEEEEecccceeeechhhhhhhcccccc--CceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccc
Confidence 999999999999999999999877666555443 479999999999999999999999999998544433 2332 2
Q ss_pred ceeEEEecC-CCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEccCC--eEEEEcCCCeEEEEEecCC
Q 040361 326 RLNCLELSA-CGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEE--CFLAGTKDGCLLVYSIENR 397 (413)
Q Consensus 326 ~i~~~~~s~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~dg~i~vw~~~~~ 397 (413)
.+..-+|-- +..++++|++|+.|+||+..+++++..+.||...|++++|+|.. .++++++||+|+||.....
T Consensus 441 fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 441 FIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred eEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 333344543 45899999999999999999999999999999999999999984 4667999999999998754
No 21
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3.9e-36 Score=267.57 Aligned_cols=202 Identities=22% Similarity=0.377 Sum_probs=188.3
Q ss_pred cceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccc
Q 040361 129 SFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRA 208 (413)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~ 208 (413)
..+|.+.|+.+.|+|+.++|+.++ .|+++|+|.+.+...+-.+++|..+|+++.|+|-|-++||+|.|++.++|..+..
T Consensus 447 L~GH~GPVyg~sFsPd~rfLlScS-ED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~ 525 (707)
T KOG0263|consen 447 LYGHSGPVYGCSFSPDRRFLLSCS-EDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHN 525 (707)
T ss_pred eecCCCceeeeeecccccceeecc-CCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccC
Confidence 566789999999999999998855 5999999999999999999999999999999999999999999999999999887
Q ss_pred cccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCcee
Q 040361 209 RAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALS 288 (413)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~ 288 (413)
. +.+.+.+|-+.|.|+.|+|+.+++++|+.|.+|++||..+|..++.+.+| ..+|.
T Consensus 526 ~-----------------------PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH-~~~V~ 581 (707)
T KOG0263|consen 526 K-----------------------PLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGH-KGPVT 581 (707)
T ss_pred C-----------------------chhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCC-CCceE
Confidence 6 78999999999999999999999999999999999999999999999886 46999
Q ss_pred eEEEccCCcEEEEECCCCeEEEEEeCC-ceeee-eecCCceeEEEecCCCCEEEEeCCCCeEEEEECCC
Q 040361 289 KLAASRHGRIVLYGDDDLSLHLFSING-KHLAS-SESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNS 355 (413)
Q Consensus 289 ~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~ 355 (413)
+++|+|+|++|++|+.|+.|.+||+.+ ..+.. .+|.+.|.++.|+.+|..||+|+.|++|++||+..
T Consensus 582 al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 582 ALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred EEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 999999999999999999999999985 44443 57899999999999999999999999999999864
No 22
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.9e-35 Score=234.65 Aligned_cols=275 Identities=16% Similarity=0.226 Sum_probs=232.1
Q ss_pred eccCCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEE
Q 040361 90 LTTQLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVV 169 (413)
Q Consensus 90 ~~~~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~ 169 (413)
.+..|+|+|.++++|+.|..+-+|..--+.... .....|.+.+..+.|..+++.++.+|. |.+|+.||.++|+.+
T Consensus 51 ~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~----~~lkgHsgAVM~l~~~~d~s~i~S~gt-Dk~v~~wD~~tG~~~ 125 (338)
T KOG0265|consen 51 YTIKFHPDGSCFASGGSDRAIVLWNVYGDCENF----WVLKGHSGAVMELHGMRDGSHILSCGT-DKTVRGWDAETGKRI 125 (338)
T ss_pred EEEEECCCCCeEeecCCcceEEEEeccccccce----eeeccccceeEeeeeccCCCEEEEecC-CceEEEEecccceee
Confidence 446789999999999999999997533333322 222367889999999999999999887 999999999999999
Q ss_pred EEeecCCCeEEEEEECCC-CCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEE
Q 040361 170 QSIRQHRDVVSCVAVTTD-GSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLY 248 (413)
Q Consensus 170 ~~~~~h~~~v~~~~~~~~-~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~ 248 (413)
+.+++|.+-|+.+.-+.- ..++.+|+.|+++++||++... +++++ .....++++.
T Consensus 126 rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~-----------------------~~~t~-~~kyqltAv~ 181 (338)
T KOG0265|consen 126 RKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE-----------------------AIKTF-ENKYQLTAVG 181 (338)
T ss_pred ehhccccceeeecCccccCCeEEEecCCCceEEEEeecccc-----------------------hhhcc-ccceeEEEEE
Confidence 999999999999984443 3567789999999999998776 33333 3456789999
Q ss_pred EecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeC----Cce-eeee--
Q 040361 249 VSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSIN----GKH-LASS-- 321 (413)
Q Consensus 249 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~----~~~-~~~~-- 321 (413)
|..++..+.+|+-|+.|++||++.....+.+.++ ...|+.+..+++|.++.+-+.|.++++||++ +.. +...
T Consensus 182 f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh-~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g 260 (338)
T KOG0265|consen 182 FKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGH-ADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQG 260 (338)
T ss_pred ecccccceeeccccCceeeeccccCcceEEeecc-cCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeec
Confidence 9999999999999999999999999999999987 4689999999999999999999999999997 233 3322
Q ss_pred ---ecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEccCCeEE-EEcCCCeEEEEEe
Q 040361 322 ---ESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFL-AGTKDGCLLVYSI 394 (413)
Q Consensus 322 ---~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~dg~i~vw~~ 394 (413)
..+.....++|+|+++++.+|+.|..+++||..+...+..+++|.+.|.++.|+|...++ +++.|.+|++=++
T Consensus 261 ~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 261 HIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGEI 337 (338)
T ss_pred chhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeecc
Confidence 223456678999999999999999999999999999999999999999999999996555 7999999987443
No 23
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=9.8e-35 Score=243.81 Aligned_cols=270 Identities=19% Similarity=0.233 Sum_probs=235.6
Q ss_pred CCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEe
Q 040361 93 QLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSI 172 (413)
Q Consensus 93 ~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~ 172 (413)
+++.+|.+|++|+.||.+++|...- ......-.|.++++++.|.-.|+++++.| .|+++.+||..+|...+.+
T Consensus 242 ~Wn~~G~~LatG~~~G~~riw~~~G------~l~~tl~~HkgPI~slKWnk~G~yilS~~-vD~ttilwd~~~g~~~q~f 314 (524)
T KOG0273|consen 242 DWNNDGTLLATGSEDGEARIWNKDG------NLISTLGQHKGPIFSLKWNKKGTYILSGG-VDGTTILWDAHTGTVKQQF 314 (524)
T ss_pred EecCCCCeEEEeecCcEEEEEecCc------hhhhhhhccCCceEEEEEcCCCCEEEecc-CCccEEEEeccCceEEEee
Confidence 4789999999999999999963211 11222233578899999999999999855 4999999999999999999
Q ss_pred ecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecC
Q 040361 173 RQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVE 252 (413)
Q Consensus 173 ~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~ 252 (413)
.-|..+-..+.|-. ...+++++.|+.|+++.+.... |+.++.+|.++|.++.|+|.
T Consensus 315 ~~~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~-----------------------P~~t~~GH~g~V~alk~n~t 370 (524)
T KOG0273|consen 315 EFHSAPALDVDWQS-NDEFATSSTDGCIHVCKVGEDR-----------------------PVKTFIGHHGEVNALKWNPT 370 (524)
T ss_pred eeccCCccceEEec-CceEeecCCCceEEEEEecCCC-----------------------cceeeecccCceEEEEECCC
Confidence 99999878889964 4579999999999999998777 89999999999999999999
Q ss_pred CCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCC---------cEEEEECCCCeEEEEEeC-Cceeeee-
Q 040361 253 LDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHG---------RIVLYGDDDLSLHLFSIN-GKHLASS- 321 (413)
Q Consensus 253 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~l~~~~~d~~i~i~d~~-~~~~~~~- 321 (413)
+.+|++++.|+++++|.+........+..|. ..|..+.|+|+| ..+++++.|++|++||+. +..+..+
T Consensus 371 g~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hs-kei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~ 449 (524)
T KOG0273|consen 371 GSLLASCSDDGTLKIWSMGQSNSVHDLQAHS-KEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLM 449 (524)
T ss_pred CceEEEecCCCeeEeeecCCCcchhhhhhhc-cceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeec
Confidence 9999999999999999999988888888774 478889999864 468999999999999998 6666665
Q ss_pred ecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEccCCeEE-EEcCCCeEEEEEec
Q 040361 322 ESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFL-AGTKDGCLLVYSIE 395 (413)
Q Consensus 322 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~dg~i~vw~~~ 395 (413)
.|..+|.+++|+|+|+|+|+|+.||.|.+|+.++++.++.+.+ .+.|..++|+.+|..+ ++-.|+.+++-|++
T Consensus 450 kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 450 KHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred cCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC-CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 7999999999999999999999999999999999999999985 5669999999998666 57799999999875
No 24
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=4.5e-37 Score=253.36 Aligned_cols=252 Identities=18% Similarity=0.238 Sum_probs=218.6
Q ss_pred cceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccc
Q 040361 133 GSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPE 212 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~ 212 (413)
...+..+.|.|+|+.|++ |+..|.+.+|+...-.....++.|..+|+++.|++++.++++|+.+|.|++|+..-..
T Consensus 96 kc~V~~v~WtPeGRRLlt-gs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn--- 171 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLT-GSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN--- 171 (464)
T ss_pred ccceeeEEEcCCCceeEe-ecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh---
Confidence 456788999999999998 5559999999985544445567899999999999999999999999999999986554
Q ss_pred cccccceeecCCCceeeecCceeeeecCC-CCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEE
Q 040361 213 KRVRNMQIEAPRKDYVIVETPFHILCGHD-DIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLA 291 (413)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~ 291 (413)
+..++.|. ..|++++|+|+...|++++.||+|+|||....+..+.+.+| +-.|.++.
T Consensus 172 ---------------------Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GH-gwdVksvd 229 (464)
T KOG0284|consen 172 ---------------------VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGH-GWDVKSVD 229 (464)
T ss_pred ---------------------hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccC-CCCcceec
Confidence 55556665 89999999999999999999999999999999888888766 66899999
Q ss_pred EccCCcEEEEECCCCeEEEEEeC-Cceeee-eecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcE
Q 040361 292 ASRHGRIVLYGDDDLSLHLFSIN-GKHLAS-SESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKII 369 (413)
Q Consensus 292 ~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v 369 (413)
|+|...++++++.|..|++||.+ +..+.+ ..|...|..+.|+|++++|++++.|..+++||+++.+.+.++++|...|
T Consensus 230 WHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv 309 (464)
T KOG0284|consen 230 WHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDV 309 (464)
T ss_pred cCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhh
Confidence 99999999999999999999999 555554 4788999999999999999999999999999999999999999999999
Q ss_pred EEEEEccC--CeEEEEcCCCeEEEEEecCCcccccccccccCC
Q 040361 370 TSLAVTPE--ECFLAGTKDGCLLVYSIENRRTSLPRNVKSKAS 410 (413)
Q Consensus 370 ~~~~~~~~--~~~l~~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 410 (413)
+++.|+|- +.|.+|+.||.|..|.+...++.......|...
T Consensus 310 ~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~ 352 (464)
T KOG0284|consen 310 TSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGE 352 (464)
T ss_pred eeeccccccccceeeccCCCceEEEeccccccccCCCcccccc
Confidence 99999997 445569999999999998555554444455443
No 25
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=7.6e-35 Score=225.28 Aligned_cols=230 Identities=16% Similarity=0.295 Sum_probs=203.4
Q ss_pred CCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecC
Q 040361 144 SENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAP 223 (413)
Q Consensus 144 ~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 223 (413)
+...+++++++|.+|++|...+|.+..+++...+.|+.+...||++.|++++. ..|++||+.+...
T Consensus 8 d~~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np------------- 73 (311)
T KOG0315|consen 8 DDPVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNP------------- 73 (311)
T ss_pred CCceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCC-------------
Confidence 34567777778999999999999999999988889999999999999998876 6799999998872
Q ss_pred CCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEEC
Q 040361 224 RKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGD 303 (413)
Q Consensus 224 ~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 303 (413)
.++.++.+|...|+++.|..+|+++++|++||+++|||++...+.+.+... .+|+++..+|+...|+++.
T Consensus 74 --------~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~--spVn~vvlhpnQteLis~d 143 (311)
T KOG0315|consen 74 --------NPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN--SPVNTVVLHPNQTELISGD 143 (311)
T ss_pred --------CceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCC--CCcceEEecCCcceEEeec
Confidence 268899999999999999999999999999999999999997777777654 6899999999999999999
Q ss_pred CCCeEEEEEeCCceeee---eecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCC------ceEEEecCCCCcEEEEEE
Q 040361 304 DDLSLHLFSINGKHLAS---SESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSL------EVVRRYSGVGKIITSLAV 374 (413)
Q Consensus 304 ~d~~i~i~d~~~~~~~~---~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~------~~~~~~~~~~~~v~~~~~ 374 (413)
.+|.|++||+....... -.....+.++...|||.+++.+...|..++|++-+. +++.+++.|.+.+..+.+
T Consensus 144 qsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~l 223 (311)
T KOG0315|consen 144 QSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLL 223 (311)
T ss_pred CCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEE
Confidence 99999999998553332 234578999999999999999999999999998753 456778899999999999
Q ss_pred ccCCeEEE-EcCCCeEEEEEecCC
Q 040361 375 TPEECFLA-GTKDGCLLVYSIENR 397 (413)
Q Consensus 375 ~~~~~~l~-~~~dg~i~vw~~~~~ 397 (413)
|||+++|+ ++.|.+++||+.++.
T Consensus 224 SPd~k~lat~ssdktv~iwn~~~~ 247 (311)
T KOG0315|consen 224 SPDVKYLATCSSDKTVKIWNTDDF 247 (311)
T ss_pred CCCCcEEEeecCCceEEEEecCCc
Confidence 99998885 999999999999886
No 26
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=2.1e-36 Score=254.62 Aligned_cols=273 Identities=15% Similarity=0.170 Sum_probs=238.0
Q ss_pred cCCCC-CCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEE
Q 040361 92 TQLQS-GGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQ 170 (413)
Q Consensus 92 ~~~s~-~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~ 170 (413)
..|.| .+.++++++.|+.+.+| +...-...+.....|...+.+++|+.+|..++.++. |+.|++||+++|+++.
T Consensus 220 i~~fp~~~hLlLS~gmD~~vklW----~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sf-D~~lKlwDtETG~~~~ 294 (503)
T KOG0282|consen 220 IQWFPKKGHLLLSGGMDGLVKLW----NVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASF-DRFLKLWDTETGQVLS 294 (503)
T ss_pred hhhccceeeEEEecCCCceEEEE----EEecCcceehhhhcchhhhhhhhccccCCeeeeeec-ceeeeeeccccceEEE
Confidence 35667 78999999999999995 444445666777788889999999999999999776 9999999999999999
Q ss_pred EeecCCCeEEEEEECCCC-CEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEE
Q 040361 171 SIRQHRDVVSCVAVTTDG-SILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYV 249 (413)
Q Consensus 171 ~~~~h~~~v~~~~~~~~~-~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~ 249 (413)
.+. -...++|+.|.||+ +.+++|+.|+.|+.||+++++ .++.+..|-+.|..+.|
T Consensus 295 ~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k-----------------------vvqeYd~hLg~i~~i~F 350 (503)
T KOG0282|consen 295 RFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK-----------------------VVQEYDRHLGAILDITF 350 (503)
T ss_pred EEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH-----------------------HHHHHHhhhhheeeeEE
Confidence 886 45678999999988 889999999999999999998 67778889999999999
Q ss_pred ecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCceee-------eee
Q 040361 250 SVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKHLA-------SSE 322 (413)
Q Consensus 250 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-------~~~ 322 (413)
-++++.+++.+.|+.+++|+.+....+..+..+......++..+|+++.+++-+.|+.|.+|.+...... -..
T Consensus 351 ~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~ 430 (503)
T KOG0282|consen 351 VDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHS 430 (503)
T ss_pred ccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhccee
Confidence 9999999999999999999999888777665554556788999999999999999999999997632211 122
Q ss_pred cCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEccC--CeEEEEcCCCeEEEEE
Q 040361 323 SNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPE--ECFLAGTKDGCLLVYS 393 (413)
Q Consensus 323 ~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~dg~i~vw~ 393 (413)
..+.-..+.|||||++|++|+.||.+.+||.++-+++..++.|..++..+.|+|. .++++++.||.|++|+
T Consensus 431 vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 431 VAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred ccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 3456678999999999999999999999999999999999999999999999997 5788899999999996
No 27
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.1e-35 Score=239.70 Aligned_cols=242 Identities=18% Similarity=0.322 Sum_probs=220.4
Q ss_pred ecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEecccccc
Q 040361 132 LGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAP 211 (413)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~ 211 (413)
|.+-+.++++.|.+ ..+++|+.|++++|||+.+|++..++.+|-..|..+++++-..||++++.|+.|+.||++..+
T Consensus 150 HlgWVr~vavdP~n-~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nk-- 226 (460)
T KOG0285|consen 150 HLGWVRSVAVDPGN-EWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNK-- 226 (460)
T ss_pred ccceEEEEeeCCCc-eeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhh--
Confidence 45667777777774 555568889999999999999999999999999999999999999999999999999999887
Q ss_pred ccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEE
Q 040361 212 EKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLA 291 (413)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~ 291 (413)
.++.+.+|-..|.|++.+|.-..|++|+.|.++++||+++...+..+.+| ..+|.++.
T Consensus 227 ---------------------vIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH-~~~V~~V~ 284 (460)
T KOG0285|consen 227 ---------------------VIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGH-TNPVASVM 284 (460)
T ss_pred ---------------------hHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCC-CCcceeEE
Confidence 68889999999999999999999999999999999999999999999987 46899999
Q ss_pred EccCCcEEEEECCCCeEEEEEeC-Cceeee-eecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcE
Q 040361 292 ASRHGRIVLYGDDDLSLHLFSIN-GKHLAS-SESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKII 369 (413)
Q Consensus 292 ~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v 369 (413)
+.|....+++|+.|++|++||+. ++.... ..|...+.+++.+|....+++++.| .|+-|++..+..+..+.+|..-|
T Consensus 285 ~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~ii 363 (460)
T KOG0285|consen 285 CQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAII 363 (460)
T ss_pred eecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhcccccccee
Confidence 99988889999999999999998 555544 5688899999999999999999887 68999999999999999999999
Q ss_pred EEEEEccCCeEEEEcCCCeEEEEEecCCcc
Q 040361 370 TSLAVTPEECFLAGTKDGCLLVYSIENRRT 399 (413)
Q Consensus 370 ~~~~~~~~~~~l~~~~dg~i~vw~~~~~~~ 399 (413)
++++...|+.+++|+++|.+.+||.+++-.
T Consensus 364 ntl~~nsD~v~~~G~dng~~~fwdwksg~n 393 (460)
T KOG0285|consen 364 NTLSVNSDGVLVSGGDNGSIMFWDWKSGHN 393 (460)
T ss_pred eeeeeccCceEEEcCCceEEEEEecCcCcc
Confidence 999999999999999999999999998743
No 28
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.5e-34 Score=235.35 Aligned_cols=314 Identities=15% Similarity=0.206 Sum_probs=255.3
Q ss_pred EEEEecCCCCCCeEEEEeecCCcEEEEecCceEEEE-------EeeccCCCCCCceeeecCCCCccccCCCcCCCcccCC
Q 040361 52 TSIICSTRHQPSGIVYVGMLDSSIVLVNQGLTLSVK-------MWLTTQLQSGGNFTFSGSQDPFFGVGADILSPRNVGS 124 (413)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~ 124 (413)
.++++...+|+.+++++|..|+..++|+.+.....- ....+.||-+|.+||+|+.+|.+.+|....... ..
T Consensus 65 ~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~--~~ 142 (399)
T KOG0296|consen 65 DSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGE--QW 142 (399)
T ss_pred CceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCce--EE
Confidence 356666788899999999999999999976543211 123457999999999999999999974322111 11
Q ss_pred CCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEE
Q 040361 125 PLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWE 204 (413)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~ 204 (413)
.+. .....+.-+.|+|.+..|++ |+.||.+..|.+.++...+.+.+|+.++++=.|.|||++++++..||+|++|+
T Consensus 143 ~~~---~e~~dieWl~WHp~a~illA-G~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn 218 (399)
T KOG0296|consen 143 KLD---QEVEDIEWLKWHPRAHILLA-GSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWN 218 (399)
T ss_pred Eee---cccCceEEEEecccccEEEe-ecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEe
Confidence 111 22456677889997776666 88899999999999889999999999999999999999999999999999999
Q ss_pred eccccccccccccceeecCCCceeeecCceeeeecC-CCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeC--
Q 040361 205 VIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGH-DDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCH-- 281 (413)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-- 281 (413)
..+++ ++..+.+- .....++.++..+..++.|+.++.+++-+..+|+.+.....
T Consensus 219 ~ktg~-----------------------p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~ 275 (399)
T KOG0296|consen 219 PKTGQ-----------------------PLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTV 275 (399)
T ss_pred cCCCc-----------------------eeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCC
Confidence 99997 55555432 34567889999999999999999999999999988877652
Q ss_pred -----CCCCc---eeeEEEccCCcEEEEECCCCeEEEEEeCCceee-eeecCCceeEEEecCCCCEEEEeCCCCeEEEEE
Q 040361 282 -----PSGSA---LSKLAASRHGRIVLYGDDDLSLHLFSINGKHLA-SSESNGRLNCLELSACGQFLVCGGDQGQIVVRS 352 (413)
Q Consensus 282 -----~~~~~---v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d 352 (413)
.+... |.++.++..=.+.++|+-||+|.+||+....+. ...|...|+.+.|-+ ..+|++++.+|.|+.||
T Consensus 276 ~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wD 354 (399)
T KOG0296|consen 276 PELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWD 354 (399)
T ss_pred ccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeee
Confidence 11223 344445555678899999999999999855444 467889999999998 78999999999999999
Q ss_pred CCCCceEEEecCCCCcEEEEEEccCCeEE-EEcCCCeEEEEEec
Q 040361 353 MNSLEVVRRYSGVGKIITSLAVTPEECFL-AGTKDGCLLVYSIE 395 (413)
Q Consensus 353 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~dg~i~vw~~~ 395 (413)
.++|+++.++.+|...|.+++++|+.+++ +++.|++.+||++.
T Consensus 355 aRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 355 ARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred ccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 99999999999999999999999997655 79999999999875
No 29
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=1.2e-35 Score=229.90 Aligned_cols=276 Identities=20% Similarity=0.281 Sum_probs=233.9
Q ss_pred CCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEe
Q 040361 93 QLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSI 172 (413)
Q Consensus 93 ~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~ 172 (413)
...|+|-+|++++.|+.--+... ..+.-+....+|.+.+..+... .+-..+++++.|-+-++||.-+|..+..+
T Consensus 24 ~itp~g~flisa~kd~~pmlr~g-----~tgdwigtfeghkgavw~~~l~-~na~~aasaaadftakvw~a~tgdelhsf 97 (334)
T KOG0278|consen 24 PITPDGYFLISASKDGKPMLRNG-----DTGDWIGTFEGHKGAVWSATLN-KNATRAASAAADFTAKVWDAVTGDELHSF 97 (334)
T ss_pred CCCCCceEEEEeccCCCchhccC-----CCCCcEEeeeccCcceeeeecC-chhhhhhhhcccchhhhhhhhhhhhhhhh
Confidence 35789999999999987655321 1223334444556666665543 34455666777999999999999999988
Q ss_pred ecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecC
Q 040361 173 RQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVE 252 (413)
Q Consensus 173 ~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~ 252 (413)
+ |..-|.+++|+.|.++|+||+.+..+++||++..+. +...+.+|.+.|..+.|...
T Consensus 98 ~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~A----------------------pp~E~~ghtg~Ir~v~wc~e 154 (334)
T KOG0278|consen 98 E-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKA----------------------PPKEISGHTGGIRTVLWCHE 154 (334)
T ss_pred h-hhheeeeEEecccchhhhccchHHHhhhhhccCCCC----------------------CchhhcCCCCcceeEEEecc
Confidence 6 899999999999999999999999999999988773 55667899999999999999
Q ss_pred CCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCC-ceeeeeecCCceeEEE
Q 040361 253 LDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSING-KHLASSESNGRLNCLE 331 (413)
Q Consensus 253 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~i~~~~ 331 (413)
.+.++++..|++|++||.+++..++++...+ .|+++.++++|.+|.++.. +.|.+||.+. ..++.......|.+.+
T Consensus 155 D~~iLSSadd~tVRLWD~rTgt~v~sL~~~s--~VtSlEvs~dG~ilTia~g-ssV~Fwdaksf~~lKs~k~P~nV~SAS 231 (334)
T KOG0278|consen 155 DKCILSSADDKTVRLWDHRTGTEVQSLEFNS--PVTSLEVSQDGRILTIAYG-SSVKFWDAKSFGLLKSYKMPCNVESAS 231 (334)
T ss_pred CceEEeeccCCceEEEEeccCcEEEEEecCC--CCcceeeccCCCEEEEecC-ceeEEeccccccceeeccCcccccccc
Confidence 8999999999999999999999999998754 7999999999998777654 5899999984 5566677888999999
Q ss_pred ecCCCCEEEEeCCCCeEEEEECCCCceEEEe-cCCCCcEEEEEEccCCeEE-EEcCCCeEEEEEecCCccc
Q 040361 332 LSACGQFLVCGGDQGQIVVRSMNSLEVVRRY-SGVGKIITSLAVTPEECFL-AGTKDGCLLVYSIENRRTS 400 (413)
Q Consensus 332 ~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l-~~~~dg~i~vw~~~~~~~~ 400 (413)
++|+...+++|++|+.++.||..+++.+..+ ++|.++|.|+.|+|||.+. +|+.||+|++|....++..
T Consensus 232 L~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 232 LHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred ccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 9999999999999999999999999999886 8999999999999998766 5999999999999877654
No 30
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.7e-35 Score=224.22 Aligned_cols=245 Identities=16% Similarity=0.254 Sum_probs=215.2
Q ss_pred cceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccc
Q 040361 133 GSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPE 212 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~ 212 (413)
.+.+..+.|.-+|++.+++|+ |.+|++|+...|.+++++.+|..+|..++.+.|...+++|+.|..+.+||+.+++
T Consensus 17 qgaV~avryN~dGnY~ltcGs-drtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGk--- 92 (307)
T KOG0316|consen 17 QGAVRAVRYNVDGNYCLTCGS-DRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGK--- 92 (307)
T ss_pred ccceEEEEEccCCCEEEEcCC-CceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCe---
Confidence 577889999999999999998 9999999999999999999999999999999999999999999999999999998
Q ss_pred cccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCC--eEEEEEeCCCCCceeeE
Q 040361 213 KRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREG--RYVRSLCHPSGSALSKL 290 (413)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~~v~~~ 290 (413)
.+..+.+|.+.|+.++|+.+...+++|+.|.++++||.++. ++++.+... ...|.++
T Consensus 93 --------------------v~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea-~D~V~Si 151 (307)
T KOG0316|consen 93 --------------------VDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEA-KDGVSSI 151 (307)
T ss_pred --------------------eeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhh-cCceeEE
Confidence 68899999999999999999999999999999999999864 456666544 3467777
Q ss_pred EEccCCcEEEEECCCCeEEEEEeCCceeeeeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEE
Q 040361 291 AASRHGRIVLYGDDDLSLHLFSINGKHLASSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIIT 370 (413)
Q Consensus 291 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~ 370 (413)
.++ +..|++|+.||+++.||++...+..-....+|+++.|+++++..++++-|+++++.|-.+|+++..+++|...-.
T Consensus 152 ~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~ey 229 (307)
T KOG0316|consen 152 DVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEY 229 (307)
T ss_pred Eec--ccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhccccccee
Confidence 765 567999999999999999977777767788999999999999999999999999999999999999999986543
Q ss_pred EE--EEccC-CeEEEEcCCCeEEEEEecCCccccccc
Q 040361 371 SL--AVTPE-ECFLAGTKDGCLLVYSIENRRTSLPRN 404 (413)
Q Consensus 371 ~~--~~~~~-~~~l~~~~dg~i~vw~~~~~~~~~~~~ 404 (413)
.+ +++.. ...++|++||.|++||+.+.....+..
T Consensus 230 kldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~ 266 (307)
T KOG0316|consen 230 KLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLS 266 (307)
T ss_pred eeeeeecccceeEEeccCCceEEEEEeccceeeeeec
Confidence 33 44443 456679999999999999876554443
No 31
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.4e-36 Score=241.60 Aligned_cols=279 Identities=17% Similarity=0.267 Sum_probs=240.6
Q ss_pred ccCCCCCCceeeecCCCCccccCCCcCCCc--ccC-CCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCc
Q 040361 91 TTQLQSGGNFTFSGSQDPFFGVGADILSPR--NVG-SPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGR 167 (413)
Q Consensus 91 ~~~~s~~~~~l~~~~~d~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~ 167 (413)
+..|||||.++++|+.||.+.+|+.....- .+. ........+...+.++.|+.|...++ +|+.||.|++|.+.+|+
T Consensus 218 cA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlA-sGsqDGkIKvWri~tG~ 296 (508)
T KOG0275|consen 218 CARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLA-SGSQDGKIKVWRIETGQ 296 (508)
T ss_pred heeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhh-ccCcCCcEEEEEEecch
Confidence 346999999999999999999986432211 111 12233455677888888887776655 58889999999999999
Q ss_pred EEEEee-cCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEE
Q 040361 168 VVQSIR-QHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITC 246 (413)
Q Consensus 168 ~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 246 (413)
+++.+. +|+..|+|+.|+.|+..+++++.|.++++.-+..++ ++..+.+|...|+.
T Consensus 297 ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK-----------------------~LKEfrGHsSyvn~ 353 (508)
T KOG0275|consen 297 CLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGK-----------------------CLKEFRGHSSYVNE 353 (508)
T ss_pred HHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccch-----------------------hHHHhcCccccccc
Confidence 999997 799999999999999999999999999999999998 78889999999999
Q ss_pred EEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCC-CCCceeeEEEcc-CCcEEEEECCCCeEEEEEeCCceeeeee--
Q 040361 247 LYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHP-SGSALSKLAASR-HGRIVLYGDDDLSLHLFSINGKHLASSE-- 322 (413)
Q Consensus 247 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~-- 322 (413)
..|.++|+.+++++.||+|++|+..+.+++.+++.. ...+|+++..-| +...++++...+++++.++.|+.+....
T Consensus 354 a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSG 433 (508)
T KOG0275|consen 354 ATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSG 433 (508)
T ss_pred eEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccC
Confidence 999999999999999999999999999999988743 345778877766 5678999999999999999998887642
Q ss_pred --cCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEccCCeEEE-EcCCCeEEEEE
Q 040361 323 --SNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFLA-GTKDGCLLVYS 393 (413)
Q Consensus 323 --~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~dg~i~vw~ 393 (413)
..+...+..++|.|.++.+.++|+.++.|...+|++...+..|...|..++-+|...+++ -++||.+++|.
T Consensus 434 kREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 434 KREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred CccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 456677888999999999999999999999999999999999999999999999977775 89999999995
No 32
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.1e-35 Score=238.48 Aligned_cols=271 Identities=18% Similarity=0.257 Sum_probs=233.1
Q ss_pred CCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCC-CcEEEEe
Q 040361 94 LQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALND-GRVVQSI 172 (413)
Q Consensus 94 ~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~-~~~~~~~ 172 (413)
|.|+-..+++++.|+++++|+... ..+ .....+|.+.+.++.|...|.+++.+.+ |-.+++||.++ .++++.+
T Consensus 116 ~hp~~~~v~~as~d~tikv~D~~t--g~~---e~~LrGHt~sv~di~~~a~Gk~l~tcSs-Dl~~~LWd~~~~~~c~ks~ 189 (406)
T KOG0295|consen 116 FHPSEALVVSASEDATIKVFDTET--GEL---ERSLRGHTDSVFDISFDASGKYLATCSS-DLSAKLWDFDTFFRCIKSL 189 (406)
T ss_pred eccCceEEEEecCCceEEEEEccc--hhh---hhhhhccccceeEEEEecCccEEEecCC-ccchhheeHHHHHHHHHHh
Confidence 577778888999999999875321 111 2233345667899999999988887665 88899999976 5677788
Q ss_pred ecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecC
Q 040361 173 RQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVE 252 (413)
Q Consensus 173 ~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~ 252 (413)
.+|...|.+++|-|.|.++++++.|.+|+.|++.++. ++.++.+|...|..++.+.|
T Consensus 190 ~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~-----------------------cv~t~~~h~ewvr~v~v~~D 246 (406)
T KOG0295|consen 190 IGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGY-----------------------CVKTFPGHSEWVRMVRVNQD 246 (406)
T ss_pred cCcccceeeEEEEecCCeeeecccccceeEEecccce-----------------------eEEeccCchHhEEEEEecCC
Confidence 8999999999999999999999999999999999998 79999999999999999999
Q ss_pred CCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccC---------------CcEEEEECCCCeEEEEEeC-Cc
Q 040361 253 LDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRH---------------GRIVLYGDDDLSLHLFSIN-GK 316 (413)
Q Consensus 253 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~l~~~~~d~~i~i~d~~-~~ 316 (413)
|.++++++.|.++++|-+.++++...+..+ ..+|.+++|.|. +.++.+++.|++|++||+. +.
T Consensus 247 Gti~As~s~dqtl~vW~~~t~~~k~~lR~h-Eh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~ 325 (406)
T KOG0295|consen 247 GTIIASCSNDQTLRVWVVATKQCKAELREH-EHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGM 325 (406)
T ss_pred eeEEEecCCCceEEEEEeccchhhhhhhcc-ccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCe
Confidence 999999999999999999999777766655 347788877652 2589999999999999999 55
Q ss_pred eeee-eecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEccCCeE-EEEcCCCeEEEEEe
Q 040361 317 HLAS-SESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECF-LAGTKDGCLLVYSI 394 (413)
Q Consensus 317 ~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~dg~i~vw~~ 394 (413)
.+.. .+|...|..++|+|.|+||+++.+|+++++||+++++++..++.|..-|+++.|+.+.-+ ++|+-|..+++|..
T Consensus 326 cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 326 CLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 5444 579999999999999999999999999999999999999999999999999999988544 47999999999974
No 33
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.6e-34 Score=250.83 Aligned_cols=250 Identities=15% Similarity=0.245 Sum_probs=206.1
Q ss_pred cceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccc
Q 040361 133 GSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPE 212 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~ 212 (413)
+..+.+++|.-+....++.+++.+.+++|++.+..+. .+.+|.+.|.++....+|-+|+|||.|.++++|.++++....
T Consensus 323 ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~ 401 (775)
T KOG0319|consen 323 NDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKS 401 (775)
T ss_pred chhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchh
Confidence 5566777766555555555666889999988776665 888999999999966678899999999999999995443211
Q ss_pred cccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCC-CEEEEeeCCCcEEEEEccCCeEE---EEE-----eCCC
Q 040361 213 KRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVEL-DIVISGSKDGTCVFHTLREGRYV---RSL-----CHPS 283 (413)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~---~~~-----~~~~ 283 (413)
.++....+|...|.+++++..+ .+|++++.|+++++|++...+.. ..+ ...|
T Consensus 402 -------------------~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aH 462 (775)
T KOG0319|consen 402 -------------------LCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAH 462 (775)
T ss_pred -------------------hhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhh
Confidence 1466678999999999997644 58999999999999999762221 111 2234
Q ss_pred CCceeeEEEccCCcEEEEECCCCeEEEEEeCCceee-e-eecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEE
Q 040361 284 GSALSKLAASRHGRIVLYGDDDLSLHLFSINGKHLA-S-SESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRR 361 (413)
Q Consensus 284 ~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~ 361 (413)
+..|++++++|+.+++++|+.|.+.++|+++...+. . .+|...+.++.|+|..+.+++++.|++|+||.+.+..++++
T Consensus 463 dKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT 542 (775)
T KOG0319|consen 463 DKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKT 542 (775)
T ss_pred cccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeee
Confidence 568999999999999999999999999999943333 2 57999999999999999999999999999999999999999
Q ss_pred ecCCCCcEEEEEEccCC-eEEEEcCCCeEEEEEecCCccccc
Q 040361 362 YSGVGKIITSLAVTPEE-CFLAGTKDGCLLVYSIENRRTSLP 402 (413)
Q Consensus 362 ~~~~~~~v~~~~~~~~~-~~l~~~~dg~i~vw~~~~~~~~~~ 402 (413)
+.||...|..+.|-.+| ++++++.||-|++|++++......
T Consensus 543 ~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~t 584 (775)
T KOG0319|consen 543 FEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMT 584 (775)
T ss_pred ecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhh
Confidence 99999999999999886 577899999999999999876644
No 34
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=5.5e-34 Score=260.00 Aligned_cols=244 Identities=22% Similarity=0.354 Sum_probs=211.5
Q ss_pred cceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCc--EEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccc
Q 040361 133 GSQCFTTMQTPSENFLITCGNWENSFQVIALNDGR--VVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARA 210 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~ 210 (413)
...+.++.++++|+.+++ ++.|+.+++|+..+++ ....+.+|...|.+++|+|+++++++++.|++|++||+....
T Consensus 159 ~~sv~~~~fs~~g~~l~~-~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~- 236 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAA-ASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDG- 236 (456)
T ss_pred cCceEEEEEcCCCCeEEE-ccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCC-
Confidence 456777899999999665 5559999999998877 778888999999999999999999999999999999994442
Q ss_pred cccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeE
Q 040361 211 PEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKL 290 (413)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~ 290 (413)
..+.++.+|...|++++|+|+++++++|+.|++|++||+++++++..+..|. ..|+++
T Consensus 237 ---------------------~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs-~~is~~ 294 (456)
T KOG0266|consen 237 ---------------------RNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHS-DGISGL 294 (456)
T ss_pred ---------------------eEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccC-CceEEE
Confidence 1688999999999999999999999999999999999999999999999885 489999
Q ss_pred EEccCCcEEEEECCCCeEEEEEeCCcee---ee-eecCC--ceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecC
Q 040361 291 AASRHGRIVLYGDDDLSLHLFSINGKHL---AS-SESNG--RLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSG 364 (413)
Q Consensus 291 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~---~~-~~~~~--~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~ 364 (413)
+|++++.+|++++.|+.|++||+.+... .. ..+.. +++++.|+|++++++++..|+.+++||+..+..+..+.+
T Consensus 295 ~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~ 374 (456)
T KOG0266|consen 295 AFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTG 374 (456)
T ss_pred EECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecc
Confidence 9999999999999999999999995552 22 22222 689999999999999999999999999999999999998
Q ss_pred CCCcE---EEEEEccCCeEE-EEcCCCeEEEEEecCCccc
Q 040361 365 VGKII---TSLAVTPEECFL-AGTKDGCLLVYSIENRRTS 400 (413)
Q Consensus 365 ~~~~v---~~~~~~~~~~~l-~~~~dg~i~vw~~~~~~~~ 400 (413)
|...+ .+...++.+.++ +|+.|+.|++|++.++...
T Consensus 375 ~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~ 414 (456)
T KOG0266|consen 375 HSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGIL 414 (456)
T ss_pred cCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchh
Confidence 87753 344455667666 6999999999999985443
No 35
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=2.4e-33 Score=243.87 Aligned_cols=271 Identities=26% Similarity=0.394 Sum_probs=226.4
Q ss_pred CCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEe
Q 040361 93 QLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSI 172 (413)
Q Consensus 93 ~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~ 172 (413)
.++|+++++++++.|+.+.+|+..... .......+...+..+.+.++++.+++++. ||.|++|++.+++....+
T Consensus 16 ~~~~~~~~l~~~~~~g~i~i~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-~~~i~i~~~~~~~~~~~~ 89 (289)
T cd00200 16 AFSPDGKLLATGSGDGTIKVWDLETGE-----LLRTLKGHTGPVRDVAASADGTYLASGSS-DKTIRLWDLETGECVRTL 89 (289)
T ss_pred EEcCCCCEEEEeecCcEEEEEEeeCCC-----cEEEEecCCcceeEEEECCCCCEEEEEcC-CCeEEEEEcCcccceEEE
Confidence 457777888888888888886422111 11112223445568899999877777554 999999999998888899
Q ss_pred ecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecC
Q 040361 173 RQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVE 252 (413)
Q Consensus 173 ~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~ 252 (413)
..|...|.++.|+++++++++++.|+.|.+||+.+.+ ....+..|...+.+++|+|+
T Consensus 90 ~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----------------------~~~~~~~~~~~i~~~~~~~~ 146 (289)
T cd00200 90 TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK-----------------------CLTTLRGHTDWVNSVAFSPD 146 (289)
T ss_pred eccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcE-----------------------EEEEeccCCCcEEEEEEcCc
Confidence 9999999999999998999999889999999998665 46667789999999999999
Q ss_pred CCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeC-Cceeeee-ecCCceeEE
Q 040361 253 LDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSIN-GKHLASS-ESNGRLNCL 330 (413)
Q Consensus 253 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~-~~~~~i~~~ 330 (413)
+.++++++.|+.|++||+++++.+..+..+ ...+.++.|+|+++.+++++.++.+++||++ +..+... .+...+.++
T Consensus 147 ~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~ 225 (289)
T cd00200 147 GTFVASSSQDGTIKLWDLRTGKCVATLTGH-TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSV 225 (289)
T ss_pred CCEEEEEcCCCcEEEEEccccccceeEecC-ccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEE
Confidence 889988888999999999988888888755 4579999999999999999999999999998 4444444 677799999
Q ss_pred EecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEccCCe-EEEEcCCCeEEEEE
Q 040361 331 ELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEEC-FLAGTKDGCLLVYS 393 (413)
Q Consensus 331 ~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~dg~i~vw~ 393 (413)
.|+|++.++++++.+|.|++||+.+++.+..+..|...|.+++|+|++. +++++.||.|++|+
T Consensus 226 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 226 AFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 9999999999998899999999999999999999999999999999965 55799999999996
No 36
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=2e-33 Score=275.10 Aligned_cols=277 Identities=15% Similarity=0.198 Sum_probs=217.8
Q ss_pred cCCCCCCceeeecCCCCccccCCCcCCCcc--cCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEE
Q 040361 92 TQLQSGGNFTFSGSQDPFFGVGADILSPRN--VGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVV 169 (413)
Q Consensus 92 ~~~s~~~~~l~~~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~ 169 (413)
..|+|+|+++++|+.|+.+++|+....... ........+..+..+..+.|.+....++++++.||.|++||+.+++.+
T Consensus 489 i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~ 568 (793)
T PLN00181 489 IGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLV 568 (793)
T ss_pred EEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEE
Confidence 468999999999999999999753211000 000011122335567788888875555666777999999999999999
Q ss_pred EEeecCCCeEEEEEECC-CCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEE
Q 040361 170 QSIRQHRDVVSCVAVTT-DGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLY 248 (413)
Q Consensus 170 ~~~~~h~~~v~~~~~~~-~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~ 248 (413)
..+.+|.+.|++++|+| ++.+|++|+.||.|++||+.++. .+..+..+ ..+.++.
T Consensus 569 ~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~-----------------------~~~~~~~~-~~v~~v~ 624 (793)
T PLN00181 569 TEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV-----------------------SIGTIKTK-ANICCVQ 624 (793)
T ss_pred EEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc-----------------------EEEEEecC-CCeEEEE
Confidence 99999999999999997 78999999999999999998766 45555544 6789999
Q ss_pred Ee-cCCCEEEEeeCCCcEEEEEccCCe-EEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCC-------ceee
Q 040361 249 VS-VELDIVISGSKDGTCVFHTLREGR-YVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSING-------KHLA 319 (413)
Q Consensus 249 ~~-~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~-------~~~~ 319 (413)
|+ +++.++++|+.||.|++||+++.+ .+..+..+ ...|..+.|. ++.++++++.|+.|++||++. ..+.
T Consensus 625 ~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h-~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~ 702 (793)
T PLN00181 625 FPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGH-SKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLH 702 (793)
T ss_pred EeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCC-CCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceE
Confidence 95 468999999999999999998765 45555544 4589999997 678999999999999999962 2233
Q ss_pred e-eecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEe-------------cCCCCcEEEEEEccCCe-EEEEc
Q 040361 320 S-SESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRY-------------SGVGKIITSLAVTPEEC-FLAGT 384 (413)
Q Consensus 320 ~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~-~l~~~ 384 (413)
. ..|...+.+++|+|++.+|++|+.||.|++|+......+..+ ..+...|.+++|+|++. +++|+
T Consensus 703 ~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~ 782 (793)
T PLN00181 703 SFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAAN 782 (793)
T ss_pred EEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEec
Confidence 3 357788899999999999999999999999998765443222 23456799999999975 55799
Q ss_pred CCCeEEEEEe
Q 040361 385 KDGCLLVYSI 394 (413)
Q Consensus 385 ~dg~i~vw~~ 394 (413)
.||.|++|++
T Consensus 783 ~dG~I~i~~~ 792 (793)
T PLN00181 783 STGNIKILEM 792 (793)
T ss_pred CCCcEEEEec
Confidence 9999999996
No 37
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=5e-34 Score=231.78 Aligned_cols=275 Identities=20% Similarity=0.332 Sum_probs=233.8
Q ss_pred ccCCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccc-eecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEE
Q 040361 91 TTQLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESF-ELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVV 169 (413)
Q Consensus 91 ~~~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~ 169 (413)
+.++.|...++++|+.|+++++|+.... .+...+ +|...|..+++++-..+++.+|. |+.|+.||++..+.+
T Consensus 156 ~vavdP~n~wf~tgs~DrtikIwDlatg------~LkltltGhi~~vr~vavS~rHpYlFs~ge-dk~VKCwDLe~nkvI 228 (460)
T KOG0285|consen 156 SVAVDPGNEWFATGSADRTIKIWDLATG------QLKLTLTGHIETVRGVAVSKRHPYLFSAGE-DKQVKCWDLEYNKVI 228 (460)
T ss_pred EEeeCCCceeEEecCCCceeEEEEcccC------eEEEeecchhheeeeeeecccCceEEEecC-CCeeEEEechhhhhH
Confidence 4468999999999999999999864322 222222 35667888999999999998776 999999999999999
Q ss_pred EEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEE
Q 040361 170 QSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYV 249 (413)
Q Consensus 170 ~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~ 249 (413)
+.+.+|-..|.|++.+|.-..|+||+.|.++++||+++.. .+..+.+|..+|..+.+
T Consensus 229 R~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~-----------------------~V~~l~GH~~~V~~V~~ 285 (460)
T KOG0285|consen 229 RHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA-----------------------SVHVLSGHTNPVASVMC 285 (460)
T ss_pred HHhccccceeEEEeccccceeEEecCCcceEEEeeecccc-----------------------eEEEecCCCCcceeEEe
Confidence 9999999999999999999999999999999999999987 78999999999999999
Q ss_pred ecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeC-Cceeee-eecCCce
Q 040361 250 SVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSIN-GKHLAS-SESNGRL 327 (413)
Q Consensus 250 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~-~~~~~~i 327 (413)
.|-...+++|+.|++|++||++.|+....+..+ ...+.+++.+|....+++++.| .++-|++. +..+.. ..+...+
T Consensus 286 ~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~h-kksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~ii 363 (460)
T KOG0285|consen 286 QPTDPQVITGSHDSTVRLWDLRAGKTMITLTHH-KKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAII 363 (460)
T ss_pred ecCCCceEEecCCceEEEeeeccCceeEeeecc-cceeeEEecCCchhhhhccCCc-cceeccCCccchhhcccccccee
Confidence 988888999999999999999999999888876 5689999999999999999887 69999997 444443 4678889
Q ss_pred eEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEec---C-----CCCcEEEEEEccCC-eEEEEcCCCeEEEEEecCCc
Q 040361 328 NCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYS---G-----VGKIITSLAVTPEE-CFLAGTKDGCLLVYSIENRR 398 (413)
Q Consensus 328 ~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~---~-----~~~~v~~~~~~~~~-~~l~~~~dg~i~vw~~~~~~ 398 (413)
++++...|| ++++|+++|.+.+||.+++...+... . .+..|.+.+|...| ++++|..|.+|++|.-+...
T Consensus 364 ntl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe~a 442 (460)
T KOG0285|consen 364 NTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDEHA 442 (460)
T ss_pred eeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEeccccc
Confidence 999988665 78899999999999999876554432 1 24568899999886 68899999999999876543
No 38
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.1e-34 Score=217.61 Aligned_cols=270 Identities=22% Similarity=0.369 Sum_probs=225.6
Q ss_pred CCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEe
Q 040361 93 QLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSI 172 (413)
Q Consensus 93 ~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~ 172 (413)
.|+-+|++.++++.|.++++ |+|.+ ...+...-.|+.+++.+..+.++..++++|. |..+.+||+++|++.+.+
T Consensus 24 ryN~dGnY~ltcGsdrtvrL----WNp~r-g~liktYsghG~EVlD~~~s~Dnskf~s~Gg-Dk~v~vwDV~TGkv~Rr~ 97 (307)
T KOG0316|consen 24 RYNVDGNYCLTCGSDRTVRL----WNPLR-GALIKTYSGHGHEVLDAALSSDNSKFASCGG-DKAVQVWDVNTGKVDRRF 97 (307)
T ss_pred EEccCCCEEEEcCCCceEEe----ecccc-cceeeeecCCCceeeeccccccccccccCCC-CceEEEEEcccCeeeeec
Confidence 46789999999999999999 55543 2334445567889999999999999999887 999999999999999999
Q ss_pred ecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecC
Q 040361 173 RQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVE 252 (413)
Q Consensus 173 ~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~ 252 (413)
++|.+.|+.+.|+.+...+++|+.|.++++||.+.... .|++.+....+.|.++...
T Consensus 98 rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~---------------------ePiQildea~D~V~Si~v~-- 154 (307)
T KOG0316|consen 98 RGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSF---------------------EPIQILDEAKDGVSSIDVA-- 154 (307)
T ss_pred ccccceeeEEEecCcceEEEeccccceeEEEEcccCCC---------------------CccchhhhhcCceeEEEec--
Confidence 99999999999999999999999999999999987652 3788888889999998875
Q ss_pred CCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeC-Cceeeee-ecCC--cee
Q 040361 253 LDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSIN-GKHLASS-ESNG--RLN 328 (413)
Q Consensus 253 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~-~~~~--~i~ 328 (413)
+..+++|+.||+++.||++.|+...... +.+|+++.|+++++..++++.|+++++.|-. |+.+... +|.. .-.
T Consensus 155 ~heIvaGS~DGtvRtydiR~G~l~sDy~---g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykl 231 (307)
T KOG0316|consen 155 EHEIVAGSVDGTVRTYDIRKGTLSSDYF---GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKL 231 (307)
T ss_pred ccEEEeeccCCcEEEEEeecceeehhhc---CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeee
Confidence 4689999999999999999998776554 3489999999999999999999999999988 4444432 3332 234
Q ss_pred EEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCc-EEEEEEccC-CeEEEEcCCCeEEEEEec
Q 040361 329 CLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKI-ITSLAVTPE-ECFLAGTKDGCLLVYSIE 395 (413)
Q Consensus 329 ~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~-v~~~~~~~~-~~~l~~~~dg~i~vw~~~ 395 (413)
..+++.....+++|++||.|++||+.+...+..+..+... |.++.++|. ..|+++.. +.+.+|.-+
T Consensus 232 dc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~-~~~~~~~~~ 299 (307)
T KOG0316|consen 232 DCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATG-HGDLFWYQE 299 (307)
T ss_pred eeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecC-Cceeceeeh
Confidence 4567777889999999999999999999999999988877 899999998 46665443 345566543
No 39
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=8.7e-34 Score=225.23 Aligned_cols=254 Identities=19% Similarity=0.291 Sum_probs=216.4
Q ss_pred cCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEc-CCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcE
Q 040361 122 VGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIAL-NDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTV 200 (413)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i 200 (413)
...+......+.+.+..+.|.|+|..++.+|+ |..|.+|+. ...+-...+++|+++|..+.|.+|++.|++++.|.++
T Consensus 36 l~ap~m~l~gh~geI~~~~F~P~gs~~aSgG~-Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v 114 (338)
T KOG0265|consen 36 LQAPIMLLPGHKGEIYTIKFHPDGSCFASGGS-DRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTV 114 (338)
T ss_pred ccchhhhcCCCcceEEEEEECCCCCeEeecCC-cceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceE
Confidence 44566667778999999999999998888666 999999995 4556667888999999999999999999999999999
Q ss_pred EEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCC-CEEEEeeCCCcEEEEEccCCeEEEEE
Q 040361 201 MVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVEL-DIVISGSKDGTCVFHTLREGRYVRSL 279 (413)
Q Consensus 201 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~ 279 (413)
+.||+++++ .+..+++|..-|+++.-+.-| .++.+++.|+++++||+++...++++
T Consensus 115 ~~wD~~tG~-----------------------~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~ 171 (338)
T KOG0265|consen 115 RGWDAETGK-----------------------RIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF 171 (338)
T ss_pred EEEecccce-----------------------eeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcc
Confidence 999999998 688899999999998855444 36779999999999999999998888
Q ss_pred eCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCce-e-eeeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCC-
Q 040361 280 CHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKH-L-ASSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSL- 356 (413)
Q Consensus 280 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~-~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~- 356 (413)
... .+++++.|..++..+.+|+-|+.|++||++... . ...+|..+|+.+..+|+|.++.+-+.|.++++||++-.
T Consensus 172 ~~k--yqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~ 249 (338)
T KOG0265|consen 172 ENK--YQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFA 249 (338)
T ss_pred ccc--eeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccC
Confidence 653 479999999999999999999999999997333 3 33679999999999999999999999999999999843
Q ss_pred ---ceEEEecCCC----CcEEEEEEccCCeEE-EEcCCCeEEEEEecCCcccc
Q 040361 357 ---EVVRRYSGVG----KIITSLAVTPEECFL-AGTKDGCLLVYSIENRRTSL 401 (413)
Q Consensus 357 ---~~~~~~~~~~----~~v~~~~~~~~~~~l-~~~~dg~i~vw~~~~~~~~~ 401 (413)
.++..+.+|. .....++|+|++.++ +|+.|..+++||....+...
T Consensus 250 p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~ly 302 (338)
T KOG0265|consen 250 PSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILY 302 (338)
T ss_pred CCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEE
Confidence 4466676653 345677999999888 49999999999988755443
No 40
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1e-34 Score=235.09 Aligned_cols=266 Identities=18% Similarity=0.285 Sum_probs=218.4
Q ss_pred CCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCC
Q 040361 97 GGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHR 176 (413)
Q Consensus 97 ~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~ 176 (413)
|...+++|..|+++++|+ .... .......+|.+.++++.| ++.++++|+.|.+|++||+++|+++.++-+|.
T Consensus 206 DD~kiVSGlrDnTikiWD----~n~~-~c~~~L~GHtGSVLCLqy---d~rviisGSSDsTvrvWDv~tge~l~tlihHc 277 (499)
T KOG0281|consen 206 DDEKIVSGLRDNTIKIWD----KNSL-ECLKILTGHTGSVLCLQY---DERVIVSGSSDSTVRVWDVNTGEPLNTLIHHC 277 (499)
T ss_pred cchhhhcccccCceEEec----cccH-HHHHhhhcCCCcEEeeec---cceEEEecCCCceEEEEeccCCchhhHHhhhc
Confidence 346688999999999964 2211 223334556778888765 34577889989999999999999999999999
Q ss_pred CeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEE
Q 040361 177 DVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIV 256 (413)
Q Consensus 177 ~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l 256 (413)
..|..+.|+ ..+++|+|.|.++.+||+..... .+....+.||...|+.+.|+. +++
T Consensus 278 eaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~--------------------it~rrVLvGHrAaVNvVdfd~--kyI 333 (499)
T KOG0281|consen 278 EAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTD--------------------ITLRRVLVGHRAAVNVVDFDD--KYI 333 (499)
T ss_pred ceeEEEEEe--CCEEEEecCCceeEEEeccCchH--------------------HHHHHHHhhhhhheeeecccc--ceE
Confidence 999999996 45999999999999999977651 124567889999999999964 599
Q ss_pred EEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeC-Cceeee-eecCCceeEEEecC
Q 040361 257 ISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSIN-GKHLAS-SESNGRLNCLELSA 334 (413)
Q Consensus 257 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~-~~~~~~i~~~~~s~ 334 (413)
++++.|.+|++|++.++++++++.+|.. .|.++.+ .++++++|+.|.+|++||+. |..+.. .+|+.-|.|+.|
T Consensus 334 VsASgDRTikvW~~st~efvRtl~gHkR-GIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF-- 408 (499)
T KOG0281|consen 334 VSASGDRTIKVWSTSTCEFVRTLNGHKR-GIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF-- 408 (499)
T ss_pred EEecCCceEEEEeccceeeehhhhcccc-cceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee--
Confidence 9999999999999999999999988753 5655554 68999999999999999999 555544 578889999999
Q ss_pred CCCEEEEeCCCCeEEEEECCCCc---------eEEEecCCCCcEEEEEEccCCeEEEEcCCCeEEEEEecCCccc
Q 040361 335 CGQFLVCGGDQGQIVVRSMNSLE---------VVRRYSGVGKIITSLAVTPEECFLAGTKDGCLLVYSIENRRTS 400 (413)
Q Consensus 335 ~~~~l~~~~~dg~i~v~d~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~l~~~~dg~i~vw~~~~~~~~ 400 (413)
|.+.+++|+.||+|+|||+..+. ++..+..|++.|..+.|. +-++++++.|.+|.+||+.++-..
T Consensus 409 d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD-~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 409 DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD-EFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec-ceEEEeccCCCeEEEEEcCCCCcc
Confidence 67889999999999999998653 234455689999999997 457889999999999999876443
No 41
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=4.8e-33 Score=227.71 Aligned_cols=289 Identities=17% Similarity=0.223 Sum_probs=225.0
Q ss_pred CceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCC--EEEEeecCCCeEEEEEcCCCcEE----EE
Q 040361 98 GNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSEN--FLITCGNWENSFQVIALNDGRVV----QS 171 (413)
Q Consensus 98 ~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~g~~d~~i~i~~~~~~~~~----~~ 171 (413)
++++++|+.||..++|+..- .......+|.+.+.++++...+. .++++++.|.++++|.++.++.. ..
T Consensus 115 ~~~IltgsYDg~~riWd~~G------k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~ 188 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDLKG------KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKV 188 (423)
T ss_pred CceEEEeecCCeeEEEecCC------ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhH
Confidence 68999999999999974322 23333445566666666654433 35555777999999998876543 33
Q ss_pred eecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccc--cccccceeecCCCceeeecCceeeeecCCCCeEEEEE
Q 040361 172 IRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPE--KRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYV 249 (413)
Q Consensus 172 ~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~ 249 (413)
..||...|.+++..++|.++++||.|.+|.+|+..+..... ................-...++..+.+|..+|.++.|
T Consensus 189 ~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w 268 (423)
T KOG0313|consen 189 CRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVW 268 (423)
T ss_pred hcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEE
Confidence 45999999999999999999999999999999943322110 0000000000011112234578899999999999999
Q ss_pred ecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeC---Cceee--eeecC
Q 040361 250 SVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSIN---GKHLA--SSESN 324 (413)
Q Consensus 250 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~---~~~~~--~~~~~ 324 (413)
++ ...+.+++.|.+|+.||+.++..+.++... ..+.++..+|..++|++|+.|..+++||.+ +..+. ..+|.
T Consensus 269 ~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~--ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~ 345 (423)
T KOG0313|consen 269 SD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTN--KSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHK 345 (423)
T ss_pred cC-CCceEeecccceEEEEEeecccceeeeecC--cceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecch
Confidence 87 668999999999999999999999888764 479999999999999999999999999998 23332 25789
Q ss_pred CceeEEEecCCCC-EEEEeCCCCeEEEEECCCCc-eEEEecCCCCcEEEEEEccCCeEEEEcCCCeEEEEEec
Q 040361 325 GRLNCLELSACGQ-FLVCGGDQGQIVVRSMNSLE-VVRRYSGVGKIITSLAVTPEECFLAGTKDGCLLVYSIE 395 (413)
Q Consensus 325 ~~i~~~~~s~~~~-~l~~~~~dg~i~v~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~dg~i~vw~~~ 395 (413)
..|.++.|+|... .|++|+.|+++++||+++.+ ++..+.+|.+.|.++.|...+.+++|+.|.+|+++.-.
T Consensus 346 nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 346 NWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred hhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCCceEEeccCcceEEEeccc
Confidence 9999999999765 57789999999999999887 89999999999999999977778889999999998754
No 42
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-32 Score=247.05 Aligned_cols=252 Identities=18% Similarity=0.264 Sum_probs=222.2
Q ss_pred CCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEE
Q 040361 123 GSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMV 202 (413)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~i 202 (413)
...+.+..+|.+++..+.|+|+...+++.|. |-.|++|++.+.+++.++.+|-+.|..+.|++.-.+++++|.|.+|+|
T Consensus 41 ~tli~rFdeHdGpVRgv~FH~~qplFVSGGD-DykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrI 119 (1202)
T KOG0292|consen 41 GTLIDRFDEHDGPVRGVDFHPTQPLFVSGGD-DYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRI 119 (1202)
T ss_pred hhHHhhhhccCCccceeeecCCCCeEEecCC-ccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEE
Confidence 3455566778999999999999988887655 999999999999999999999999999999999999999999999999
Q ss_pred EEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeE-------
Q 040361 203 WEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRY------- 275 (413)
Q Consensus 203 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~------- 275 (413)
|+..++. ++..+.||...|.|..|+|....++|+|-|.+|++||+.-.+.
T Consensus 120 WNwqsr~-----------------------~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~ 176 (1202)
T KOG0292|consen 120 WNWQSRK-----------------------CIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGS 176 (1202)
T ss_pred EeccCCc-----------------------eEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCC
Confidence 9999888 8999999999999999999999999999999999999852110
Q ss_pred ---------------------E-EEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCceeee----eecCCceeE
Q 040361 276 ---------------------V-RSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKHLAS----SESNGRLNC 329 (413)
Q Consensus 276 ---------------------~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~----~~~~~~i~~ 329 (413)
+ ..+++| ...|+-++|+|.-.+|++|+.|..|++|.++..+... .+|.++|.+
T Consensus 177 ~e~~~~~~~~~~dLfg~~DaVVK~VLEGH-DRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVss 255 (1202)
T KOG0292|consen 177 LEDQMRGQQGNSDLFGQTDAVVKHVLEGH-DRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSS 255 (1202)
T ss_pred chhhhhccccchhhcCCcCeeeeeeeccc-ccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcce
Confidence 1 122333 4578999999999999999999999999998544332 478999999
Q ss_pred EEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEccCCeEEEEcCCCeEEEEEecCCcc
Q 040361 330 LELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFLAGTKDGCLLVYSIENRRT 399 (413)
Q Consensus 330 ~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~dg~i~vw~~~~~~~ 399 (413)
+-|+|..+++++.++|++|+|||+...+.+.+++...+..+.++-+|...+++++.|+-+.+|.++..++
T Consensus 256 vlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleRErp 325 (1202)
T KOG0292|consen 256 VLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLERERP 325 (1202)
T ss_pred EEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCceEEEEEcccCc
Confidence 9999999999999999999999999999999998878899999999999999988998899999985443
No 43
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.3e-32 Score=234.54 Aligned_cols=278 Identities=14% Similarity=0.181 Sum_probs=232.7
Q ss_pred EecCCCCCCeEEEEeecCCcEEEEecCceEEEEEeeccCCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecc
Q 040361 55 ICSTRHQPSGIVYVGMLDSSIVLVNQGLTLSVKMWLTTQLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGS 134 (413)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (413)
-+..+||..|.++.+..+|.+.+|+......++-+..+ .-
T Consensus 17 KsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~----------------------------------------~~ 56 (794)
T KOG0276|consen 17 KSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVS----------------------------------------EV 56 (794)
T ss_pred eeeecCCCCceEEEeeecCeeEEEecccceeeeeeeec----------------------------------------cc
Confidence 44568999999999999999999998876666543221 12
Q ss_pred eeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccc
Q 040361 135 QCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKR 214 (413)
Q Consensus 135 ~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~ 214 (413)
++.++.|...-+ .+++|+.|..|+||+.++++.+..+++|.+.|.|++.+|...+++|+|.|-+|++||.+..-
T Consensus 57 PvRa~kfiaRkn-Wiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~w----- 130 (794)
T KOG0276|consen 57 PVRAAKFIARKN-WIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEW----- 130 (794)
T ss_pred chhhheeeeccc-eEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCce-----
Confidence 234444444444 45558889999999999999999999999999999999999999999999999999998765
Q ss_pred cccceeecCCCceeeecCceeeeecCCCCeEEEEEec-CCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEc
Q 040361 215 VRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSV-ELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAAS 293 (413)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~ 293 (413)
.+.+++.+|+..|.+++|+| |.+.+++++-|++|++|.+.+..+..++..| ...|+++.+-
T Consensus 131 -----------------a~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gH-ekGVN~Vdyy 192 (794)
T KOG0276|consen 131 -----------------ACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGH-EKGVNCVDYY 192 (794)
T ss_pred -----------------eeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeecc-ccCcceEEec
Confidence 36788999999999999999 5679999999999999999999999999976 4589999998
Q ss_pred cC--CcEEEEECCCCeEEEEEeCCceeee--eecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcE
Q 040361 294 RH--GRIVLYGDDDLSLHLFSINGKHLAS--SESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKII 369 (413)
Q Consensus 294 ~~--~~~l~~~~~d~~i~i~d~~~~~~~~--~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v 369 (413)
+. ..+|++|+.|..+++||.+++.... .+|...|..+.|+|.-..+++|++||+++||+..+.++..++.-.-+.+
T Consensus 193 ~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRv 272 (794)
T KOG0276|consen 193 TGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERV 272 (794)
T ss_pred cCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceE
Confidence 74 4699999999999999999655443 4689999999999999999999999999999999988888887677889
Q ss_pred EEEEEccCC-eEEEEcCCCeEEEEEecCC
Q 040361 370 TSLAVTPEE-CFLAGTKDGCLLVYSIENR 397 (413)
Q Consensus 370 ~~~~~~~~~-~~l~~~~dg~i~vw~~~~~ 397 (413)
++++-.+.+ +++.|.++|.|. .++...
T Consensus 273 W~I~~~k~~~~i~vG~Deg~i~-v~lgre 300 (794)
T KOG0276|consen 273 WCIAAHKGDGKIAVGFDEGSVT-VKLGRE 300 (794)
T ss_pred EEEeecCCCCeEEEeccCCcEE-EEccCC
Confidence 999988875 444577766654 355443
No 44
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.1e-32 Score=239.91 Aligned_cols=309 Identities=17% Similarity=0.211 Sum_probs=242.7
Q ss_pred EEEEeecCCcEEEEecCceEEEE--------EeeccCCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccce-ecce
Q 040361 65 IVYVGMLDSSIVLVNQGLTLSVK--------MWLTTQLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFE-LGSQ 135 (413)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 135 (413)
.++.-..+-++++++......++ +.+-+-+.|..+++|.++..+.+|++.. .....+.+. |...
T Consensus 295 ~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~-------~~~~c~ii~GH~e~ 367 (775)
T KOG0319|consen 295 QLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTL-------PTSYCQIIPGHTEA 367 (775)
T ss_pred ceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEec-------CCCceEEEeCchhh
Confidence 34444555667777544333332 2233446888899999999999999721 122222333 3455
Q ss_pred eEEEEecCCCCEEEEeecCCCeEEEEEcCCCc----EEEEeecCCCeEEEEEECCC-CCEEEEccCCCcEEEEEeccccc
Q 040361 136 CFTTMQTPSENFLITCGNWENSFQVIALNDGR----VVQSIRQHRDVVSCVAVTTD-GSILATGSYDTTVMVWEVIRARA 210 (413)
Q Consensus 136 ~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~----~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~dg~i~iw~~~~~~~ 210 (413)
+.++....+| .++++|+.|.++++|.++++. ++....+|.+.|.+++++.. ..+|+++|.|+++++|++...+.
T Consensus 368 vlSL~~~~~g-~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~ 446 (775)
T KOG0319|consen 368 VLSLDVWSSG-DLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKE 446 (775)
T ss_pred eeeeeecccC-cEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCccc
Confidence 6666655666 566778889999999885433 34566789999999999774 46899999999999999977331
Q ss_pred cccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeE
Q 040361 211 PEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKL 290 (413)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~ 290 (413)
.... +.-....+...|...|+|++.+|+.++++||++|.+.++|++...+...++.+|. ..+.++
T Consensus 447 ~~~~--------------~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~-RGvw~V 511 (775)
T KOG0319|consen 447 TAFP--------------IVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHT-RGVWCV 511 (775)
T ss_pred cccc--------------ceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCc-cceEEE
Confidence 1110 0111233456799999999999999999999999999999999999999999885 589999
Q ss_pred EEccCCcEEEEECCCCeEEEEEeCC-ceeeee-ecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCc
Q 040361 291 AASRHGRIVLYGDDDLSLHLFSING-KHLASS-ESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKI 368 (413)
Q Consensus 291 ~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~ 368 (413)
.|++..+.+++++.|++|+||.+.. ..+..+ +|...|..++|-.+|+.|++++.||.|++|++.+++++.++..|.+.
T Consensus 512 ~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~Dr 591 (775)
T KOG0319|consen 512 SFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDR 591 (775)
T ss_pred EeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccce
Confidence 9999999999999999999999984 445554 59999999999999999999999999999999999999999999999
Q ss_pred EEEEEEccCC-eEEEEcCCCeEEEEEecC
Q 040361 369 ITSLAVTPEE-CFLAGTKDGCLLVYSIEN 396 (413)
Q Consensus 369 v~~~~~~~~~-~~l~~~~dg~i~vw~~~~ 396 (413)
|++++.++.. .+++|+.||.|.+|.=.+
T Consensus 592 vWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 592 VWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred eEEEeecCccceeEecCCCeEEEEeecCc
Confidence 9999999985 455799999999997554
No 45
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=3.3e-34 Score=232.09 Aligned_cols=231 Identities=17% Similarity=0.336 Sum_probs=197.0
Q ss_pred ceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEecccccccc
Q 040361 134 SQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEK 213 (413)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~ 213 (413)
..+.++.| |++ .+++|..|++|+|||.++-.+...+.||++.|.|+.| +.+.+++||.|.+|++||+++++
T Consensus 198 kgVYClQY--DD~-kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge---- 268 (499)
T KOG0281|consen 198 KGVYCLQY--DDE-KIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGE---- 268 (499)
T ss_pred CceEEEEe--cch-hhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCc----
Confidence 34444443 333 4556889999999999999999999999999999999 46799999999999999999998
Q ss_pred ccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEE---EEEeCCCCCceeeE
Q 040361 214 RVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYV---RSLCHPSGSALSKL 290 (413)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~---~~~~~~~~~~v~~~ 290 (413)
++.++.+|...|..+.|+. .++++++.|.++.+||+.+...+ +.+.+| ...|+.+
T Consensus 269 -------------------~l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGH-rAaVNvV 326 (499)
T KOG0281|consen 269 -------------------PLNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGH-RAAVNVV 326 (499)
T ss_pred -------------------hhhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhh-hhheeee
Confidence 8899999999999999975 58999999999999999765422 233344 4578888
Q ss_pred EEccCCcEEEEECCCCeEEEEEeCCcee-ee-eecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCc
Q 040361 291 AASRHGRIVLYGDDDLSLHLFSINGKHL-AS-SESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKI 368 (413)
Q Consensus 291 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~ 368 (413)
.|+ .+++++++.|.+|++|++.+... .. .+|...|.|+.+ .|+++++|+.|.+|++||+..|.+++.+++|+.-
T Consensus 327 dfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeL 402 (499)
T KOG0281|consen 327 DFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEEL 402 (499)
T ss_pred ccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHh
Confidence 775 46999999999999999985443 33 468888999988 7999999999999999999999999999999999
Q ss_pred EEEEEEccCCeEEEEcCCCeEEEEEecCCccc
Q 040361 369 ITSLAVTPEECFLAGTKDGCLLVYSIENRRTS 400 (413)
Q Consensus 369 v~~~~~~~~~~~l~~~~dg~i~vw~~~~~~~~ 400 (413)
|.++.|. +.++++|+.||+|++||+..+..+
T Consensus 403 vRciRFd-~krIVSGaYDGkikvWdl~aaldp 433 (499)
T KOG0281|consen 403 VRCIRFD-NKRIVSGAYDGKIKVWDLQAALDP 433 (499)
T ss_pred hhheeec-CceeeeccccceEEEEecccccCC
Confidence 9999998 567999999999999999987655
No 46
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=7.2e-31 Score=228.23 Aligned_cols=245 Identities=23% Similarity=0.390 Sum_probs=214.1
Q ss_pred eecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccc
Q 040361 131 ELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARA 210 (413)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~ 210 (413)
.|...+.++.++|+++.+++++ .||.+++|++.+++....+..|...+..+.|+|++++|++++.||.|++|++.+++
T Consensus 7 ~h~~~i~~~~~~~~~~~l~~~~-~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~- 84 (289)
T cd00200 7 GHTGGVTCVAFSPDGKLLATGS-GDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGE- 84 (289)
T ss_pred ccCCCEEEEEEcCCCCEEEEee-cCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCccc-
Confidence 3467788999999988887755 49999999999998888899999999999999999999999999999999998765
Q ss_pred cccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeE
Q 040361 211 PEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKL 290 (413)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~ 290 (413)
....+..|...+.++.|+++++++++++.|+.+.+||+++++....+..+ ...+.++
T Consensus 85 ----------------------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~i~~~ 141 (289)
T cd00200 85 ----------------------CVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGH-TDWVNSV 141 (289)
T ss_pred ----------------------ceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccC-CCcEEEE
Confidence 46677789999999999999888998888999999999988888888754 4579999
Q ss_pred EEccCCcEEEEECCCCeEEEEEeC-Cceeee-eecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCc
Q 040361 291 AASRHGRIVLYGDDDLSLHLFSIN-GKHLAS-SESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKI 368 (413)
Q Consensus 291 ~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~ 368 (413)
.++|++.++++++.++.+++||++ ++.... ..+...+.++.|+|+++.+++++.+|.|++||+.+++.+..+..|...
T Consensus 142 ~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~ 221 (289)
T cd00200 142 AFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENG 221 (289)
T ss_pred EEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCc
Confidence 999999999999889999999998 333333 356668999999999999999999999999999999999888889999
Q ss_pred EEEEEEccCCeEEE-EcCCCeEEEEEecCCccc
Q 040361 369 ITSLAVTPEECFLA-GTKDGCLLVYSIENRRTS 400 (413)
Q Consensus 369 v~~~~~~~~~~~l~-~~~dg~i~vw~~~~~~~~ 400 (413)
+.++.|+|++.+++ ++.||.|++|++.+++..
T Consensus 222 i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~ 254 (289)
T cd00200 222 VNSVAFSPDGYLLASGSEDGTIRVWDLRTGECV 254 (289)
T ss_pred eEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeE
Confidence 99999999987776 556999999999876543
No 47
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.5e-31 Score=217.90 Aligned_cols=281 Identities=15% Similarity=0.204 Sum_probs=233.3
Q ss_pred cCCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEE
Q 040361 92 TQLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQS 171 (413)
Q Consensus 92 ~~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~ 171 (413)
+..+|+.+++++|+.|..--+|..... .......+|...+.++.|+.+|.+|+. |..+|.|+||...++.....
T Consensus 70 vsl~P~~~l~aTGGgDD~AflW~~~~g-----e~~~eltgHKDSVt~~~FshdgtlLAT-GdmsG~v~v~~~stg~~~~~ 143 (399)
T KOG0296|consen 70 VSLHPNNNLVATGGGDDLAFLWDISTG-----EFAGELTGHKDSVTCCSFSHDGTLLAT-GDMSGKVLVFKVSTGGEQWK 143 (399)
T ss_pred EEeCCCCceEEecCCCceEEEEEccCC-----cceeEecCCCCceEEEEEccCceEEEe-cCCCccEEEEEcccCceEEE
Confidence 346888899999999998888632211 244455667889999999999987776 66799999999999999988
Q ss_pred eecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEec
Q 040361 172 IRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSV 251 (413)
Q Consensus 172 ~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~ 251 (413)
+...-+.+.-+.|+|.+..|+.|+.||.+-+|.+..+. ..+.+.+|..++++-.|.|
T Consensus 144 ~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~-----------------------~~kv~~Gh~~~ct~G~f~p 200 (399)
T KOG0296|consen 144 LDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA-----------------------LCKVMSGHNSPCTCGEFIP 200 (399)
T ss_pred eecccCceEEEEecccccEEEeecCCCcEEEEECCCcc-----------------------eeeEecCCCCCcccccccC
Confidence 87777888999999999999999999999999998754 5788999999999999999
Q ss_pred CCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeC-Cceeeee---------
Q 040361 252 ELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSIN-GKHLASS--------- 321 (413)
Q Consensus 252 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~--------- 321 (413)
+|+.++++..||+|++||+.+++++..+.........++.++..+..++.|+.++.+++-+.. ++.+...
T Consensus 201 dGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~ 280 (399)
T KOG0296|consen 201 DGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKP 280 (399)
T ss_pred CCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccc
Confidence 999999999999999999999999999886556677888999999999999999988887765 3333221
Q ss_pred ecCCceeEEEe---cCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEccCCeEEEEcCCCeEEEEEecCCc
Q 040361 322 ESNGRLNCLEL---SACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFLAGTKDGCLLVYSIENRR 398 (413)
Q Consensus 322 ~~~~~i~~~~~---s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~dg~i~vw~~~~~~ 398 (413)
.+...+.++.+ +..=.+.|+|+-||+|.|||+...++.+.+. |..+|+.+.|.++..+++++.+|.|+.||.++|+
T Consensus 281 ~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~ 359 (399)
T KOG0296|consen 281 SQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQ 359 (399)
T ss_pred cchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcCcchheeeccCceEEeeeccccc
Confidence 23334445544 4455788999999999999999887777665 8889999999997778899999999999999997
Q ss_pred cccc
Q 040361 399 TSLP 402 (413)
Q Consensus 399 ~~~~ 402 (413)
....
T Consensus 360 l~~~ 363 (399)
T KOG0296|consen 360 LKFT 363 (399)
T ss_pred eEEE
Confidence 6643
No 48
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.9e-31 Score=229.43 Aligned_cols=240 Identities=19% Similarity=0.268 Sum_probs=211.4
Q ss_pred cceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeec-CCCeEEEEEECCCCCEEEEccCCCcEEEEEecccccc
Q 040361 133 GSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQ-HRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAP 211 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~ 211 (413)
...+.++.|+++|.+|++ |..+|.|.|||..+.+.+..+.+ |...|-+++|. +..+.+|+.|+.|..+|++..+.
T Consensus 217 ~~~vtSv~ws~~G~~Lav-G~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~- 292 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAV-GTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQH- 292 (484)
T ss_pred CCceEEEEECCCCCEEEE-eecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchh-
Confidence 466889999999999988 66699999999999999999999 99999999997 67899999999999999988772
Q ss_pred ccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEE
Q 040361 212 EKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLA 291 (413)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~ 291 (413)
....+.+|...|..+.|++++.++++|+.|+.+.|||....++...+..| ...|..++
T Consensus 293 ---------------------~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H-~aAVKA~a 350 (484)
T KOG0305|consen 293 ---------------------VVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEH-TAAVKALA 350 (484)
T ss_pred ---------------------hhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEecc-ceeeeEee
Confidence 22347899999999999999999999999999999999888888888776 46899999
Q ss_pred Ecc-CCcEEEEEC--CCCeEEEEEeC-CceeeeeecCCceeEEEecCCCCEEEE--eCCCCeEEEEECCCCceEEEecCC
Q 040361 292 ASR-HGRIVLYGD--DDLSLHLFSIN-GKHLASSESNGRLNCLELSACGQFLVC--GGDQGQIVVRSMNSLEVVRRYSGV 365 (413)
Q Consensus 292 ~~~-~~~~l~~~~--~d~~i~i~d~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~--~~~dg~i~v~d~~~~~~~~~~~~~ 365 (413)
|+| ...+||+|+ .|+.|++||.. +..+........|..+.|++..+-|++ |..++.|.||+..+.+.+..+.+|
T Consensus 351 wcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH 430 (484)
T KOG0305|consen 351 WCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGH 430 (484)
T ss_pred eCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCC
Confidence 999 567788865 58999999998 666666778899999999999876665 456779999999999999999999
Q ss_pred CCcEEEEEEccCCeEE-EEcCCCeEEEEEecCCc
Q 040361 366 GKIITSLAVTPEECFL-AGTKDGCLLVYSIENRR 398 (413)
Q Consensus 366 ~~~v~~~~~~~~~~~l-~~~~dg~i~vw~~~~~~ 398 (413)
...|..++++|||..+ +|+.|.++++|++-+..
T Consensus 431 ~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~~ 464 (484)
T KOG0305|consen 431 TSRVLYLALSPDGETIVTGAADETLRFWNLFDER 464 (484)
T ss_pred cceeEEEEECCCCCEEEEecccCcEEeccccCCC
Confidence 9999999999997655 69999999999998753
No 49
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-30 Score=206.19 Aligned_cols=242 Identities=19% Similarity=0.231 Sum_probs=207.7
Q ss_pred cceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccC--CCcEEEEEeccccc
Q 040361 133 GSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSY--DTTVMVWEVIRARA 210 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~--dg~i~iw~~~~~~~ 210 (413)
...+.++.|+++|..++++. .|.+++|||..+++.++++..+.-.+..++|....+.++.++. |.+|+..++.+.+
T Consensus 14 ~~~i~sl~fs~~G~~litss-~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNk- 91 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSS-EDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNK- 91 (311)
T ss_pred CCceeEEEecCCCCEEEEec-CCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCc-
Confidence 66788999999999999955 4889999999999999999988889999999887777777776 8999999999988
Q ss_pred cccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeE
Q 040361 211 PEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKL 290 (413)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~ 290 (413)
.++.+.||...|+.++.+|-+..+++++.|++|++||++..++...+.... -...
T Consensus 92 ----------------------ylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~---~pi~ 146 (311)
T KOG1446|consen 92 ----------------------YLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG---RPIA 146 (311)
T ss_pred ----------------------eEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC---Ccce
Confidence 789999999999999999999999999999999999999888777665432 3457
Q ss_pred EEccCCcEEEEECCCCeEEEEEeCC---ceeeee----ecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEec
Q 040361 291 AASRHGRIVLYGDDDLSLHLFSING---KHLASS----ESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYS 363 (413)
Q Consensus 291 ~~~~~~~~l~~~~~d~~i~i~d~~~---~~~~~~----~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~ 363 (413)
+++|+|-++|++.....|++||++. ...... ......+.+.|||||++|+.++..+.+++.|.-+|.....+.
T Consensus 147 AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs 226 (311)
T KOG1446|consen 147 AFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFS 226 (311)
T ss_pred eECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEe
Confidence 9999999999999888999999982 222222 345678999999999999999999999999999999998887
Q ss_pred CCCCc---EEEEEEccCCeEE-EEcCCCeEEEEEecCCcccc
Q 040361 364 GVGKI---ITSLAVTPEECFL-AGTKDGCLLVYSIENRRTSL 401 (413)
Q Consensus 364 ~~~~~---v~~~~~~~~~~~l-~~~~dg~i~vw~~~~~~~~~ 401 (413)
.+... ..+..|+||++++ +|+.||+|.+|++++++...
T Consensus 227 ~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~ 268 (311)
T KOG1446|consen 227 GYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVA 268 (311)
T ss_pred eccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEee
Confidence 66433 2577899999877 68899999999999886554
No 50
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.9e-32 Score=241.93 Aligned_cols=245 Identities=17% Similarity=0.260 Sum_probs=215.7
Q ss_pred ceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEecccccccc
Q 040361 134 SQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEK 213 (413)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~ 213 (413)
..+-.+.|+|....+++ +-..|.|++||..-+.++..+..|.++|..++|+|+..++++|+.|..|++|+..+.+
T Consensus 10 sRvKglsFHP~rPwILt-slHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr---- 84 (1202)
T KOG0292|consen 10 SRVKGLSFHPKRPWILT-SLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR---- 84 (1202)
T ss_pred ccccceecCCCCCEEEE-eecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccce----
Confidence 34556778888777776 4459999999999999999999999999999999999999999999999999999888
Q ss_pred ccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEc
Q 040361 214 RVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAAS 293 (413)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~ 293 (413)
++.++.+|-+.|..+.|++...+++|+|.|.+|+||+..+++++..+.+| +..|.+..|+
T Consensus 85 -------------------clftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGH-nHYVMcAqFh 144 (1202)
T KOG0292|consen 85 -------------------CLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGH-NHYVMCAQFH 144 (1202)
T ss_pred -------------------ehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecC-ceEEEeeccC
Confidence 78999999999999999999999999999999999999999999999987 5689999999
Q ss_pred cCCcEEEEECCCCeEEEEEeCCcee-------------------------------eeeecCCceeEEEecCCCCEEEEe
Q 040361 294 RHGRIVLYGDDDLSLHLFSINGKHL-------------------------------ASSESNGRLNCLELSACGQFLVCG 342 (413)
Q Consensus 294 ~~~~~l~~~~~d~~i~i~d~~~~~~-------------------------------~~~~~~~~i~~~~~s~~~~~l~~~ 342 (413)
|....+++++-|.+|++||+.|-+. ...+|+..|+-++|+|.-.++++|
T Consensus 145 ptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG 224 (1202)
T KOG0292|consen 145 PTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSG 224 (1202)
T ss_pred CccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEec
Confidence 9999999999999999999963210 012577789999999999999999
Q ss_pred CCCCeEEEEECCCCc--eEEEecCCCCcEEEEEEccCC-eEEEEcCCCeEEEEEecCCcccccc
Q 040361 343 GDQGQIVVRSMNSLE--VVRRYSGVGKIITSLAVTPEE-CFLAGTKDGCLLVYSIENRRTSLPR 403 (413)
Q Consensus 343 ~~dg~i~v~d~~~~~--~~~~~~~~~~~v~~~~~~~~~-~~l~~~~dg~i~vw~~~~~~~~~~~ 403 (413)
++|..|++|.+...+ .+.+..+|.+.|.++-|+|.. .+++.++|++|+|||+...+....+
T Consensus 225 ~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tf 288 (1202)
T KOG0292|consen 225 ADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTF 288 (1202)
T ss_pred CCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeee
Confidence 999999999987654 345678999999999999984 5668999999999999887655443
No 51
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=5.7e-32 Score=223.72 Aligned_cols=268 Identities=18% Similarity=0.236 Sum_probs=218.4
Q ss_pred CCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEee
Q 040361 94 LQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIR 173 (413)
Q Consensus 94 ~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~ 173 (413)
|-++...+++|+.|..+.+|............+. +-.+.+.++.|.+++.++++++. |+.+++|+++..+...++.
T Consensus 183 ~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLa---Gs~g~it~~d~d~~~~~~iAas~-d~~~r~Wnvd~~r~~~TLs 258 (459)
T KOG0288|consen 183 FLRNSDTLATGGSDRIIKLWNVLGEKSELISTLA---GSLGNITSIDFDSDNKHVIAASN-DKNLRLWNVDSLRLRHTLS 258 (459)
T ss_pred EccCcchhhhcchhhhhhhhhcccchhhhhhhhh---ccCCCcceeeecCCCceEEeecC-CCceeeeeccchhhhhhhc
Confidence 3455688999999999999754333321222222 22567889999999999999776 9999999999999999999
Q ss_pred cCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCC
Q 040361 174 QHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVEL 253 (413)
Q Consensus 174 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~ 253 (413)
+|++.|+++.|......+++|+.|.+|++||+.... +..++. ....+..|..+ .
T Consensus 259 GHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~-----------------------C~kt~l-~~S~cnDI~~~--~ 312 (459)
T KOG0288|consen 259 GHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAY-----------------------CSKTVL-PGSQCNDIVCS--I 312 (459)
T ss_pred ccccceeeehhhccccceeeccccchhhhhhhhhhh-----------------------eecccc-ccccccceEec--c
Confidence 999999999998877779999999999999998865 222221 22334445554 4
Q ss_pred CEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCceeeee------ecCCce
Q 040361 254 DIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKHLASS------ESNGRL 327 (413)
Q Consensus 254 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~------~~~~~i 327 (413)
..+++|-.|++|++||.++..+.++...+ +.|+++..++++..+++++.|.++.+.|+++..+... ......
T Consensus 313 ~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g--g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDw 390 (459)
T KOG0288|consen 313 SDVISGHFDKKVRFWDIRSADKTRSVPLG--GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDW 390 (459)
T ss_pred eeeeecccccceEEEeccCCceeeEeecC--cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecccccccccc
Confidence 57889999999999999999999988775 4899999999999999999999999999997666542 233458
Q ss_pred eEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCC--cEEEEEEccCCeEE-EEcCCCeEEEEE
Q 040361 328 NCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGK--IITSLAVTPEECFL-AGTKDGCLLVYS 393 (413)
Q Consensus 328 ~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l-~~~~dg~i~vw~ 393 (413)
+.+.|||++.|+++|+.||.|+||++.++++...+..... .|++++|+|.|..+ +++.++.+.+|.
T Consensus 391 trvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 391 TRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred ceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 8999999999999999999999999999999988875444 59999999998655 799999999994
No 52
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=6.5e-30 Score=200.44 Aligned_cols=237 Identities=14% Similarity=0.242 Sum_probs=194.8
Q ss_pred cceeEEEEecCCCCEEEEeecCCCeEEEEEcCCC---cEEEEe-ecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccc
Q 040361 133 GSQCFTTMQTPSENFLITCGNWENSFQVIALNDG---RVVQSI-RQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRA 208 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~---~~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~ 208 (413)
...+-.++|+|....++++++.|..|++|+...+ .+...+ .+|...|..++|+|.|++|++||.|.++.||.-..+
T Consensus 14 ~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~ 93 (312)
T KOG0645|consen 14 KDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDG 93 (312)
T ss_pred CCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCC
Confidence 4457888888883345555666999999998743 333344 359999999999999999999999999999987655
Q ss_pred cccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCe---EEEEEeCCCCC
Q 040361 209 RAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGR---YVRSLCHPSGS 285 (413)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~~~~~ 285 (413)
.. .++.++.||+..|.|++|+++|++||++++|+.|-+|.+..+. +...+..| ..
T Consensus 94 ef---------------------ecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~H-tq 151 (312)
T KOG0645|consen 94 EF---------------------ECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEH-TQ 151 (312)
T ss_pred ce---------------------eEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccc-cc
Confidence 41 2688899999999999999999999999999999999987543 45556655 45
Q ss_pred ceeeEEEccCCcEEEEECCCCeEEEEEeC-Cc----eeeeeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEE
Q 040361 286 ALSKLAASRHGRIVLYGDDDLSLHLFSIN-GK----HLASSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVR 360 (413)
Q Consensus 286 ~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~----~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~ 360 (413)
.|..+.|+|...+|++++.|.+|++|.-. +. ......+...|.+++|++.|..|++++.|++|+||...+.-.
T Consensus 152 DVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~-- 229 (312)
T KOG0645|consen 152 DVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLS-- 229 (312)
T ss_pred cccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcc--
Confidence 79999999999999999999999999876 33 222346777999999999999999999999999998663211
Q ss_pred EecCCCCcEEEEEEccCCeEEEEcCCCeEEEEEecC
Q 040361 361 RYSGVGKIITSLAVTPEECFLAGTKDGCLLVYSIEN 396 (413)
Q Consensus 361 ~~~~~~~~v~~~~~~~~~~~l~~~~dg~i~vw~~~~ 396 (413)
..|+..+..+.|. ++.+.+++.|+.|++|.-..
T Consensus 230 --~~~sr~~Y~v~W~-~~~IaS~ggD~~i~lf~~s~ 262 (312)
T KOG0645|consen 230 --GMHSRALYDVPWD-NGVIASGGGDDAIRLFKESD 262 (312)
T ss_pred --hhcccceEeeeec-ccceEeccCCCEEEEEEecC
Confidence 1377889999999 88888899999999998774
No 53
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.3e-31 Score=230.07 Aligned_cols=243 Identities=16% Similarity=0.264 Sum_probs=216.2
Q ss_pred cceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccc
Q 040361 133 GSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPE 212 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~ 212 (413)
...+-++.++|....+++ +-.+|.|.|||.++...++.++-..-+|.+..|-+.-+++++|+.|..|++|+..+.+
T Consensus 13 SdRVKsVd~HPtePw~la-~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~e--- 88 (794)
T KOG0276|consen 13 SDRVKSVDFHPTEPWILA-ALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGE--- 88 (794)
T ss_pred CCceeeeecCCCCceEEE-eeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccce---
Confidence 456777888888887777 4459999999999999999999999999999999999999999999999999999988
Q ss_pred cccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCC-eEEEEEeCCCCCceeeEE
Q 040361 213 KRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREG-RYVRSLCHPSGSALSKLA 291 (413)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~~v~~~~ 291 (413)
.+..+..|.+.|.+++.+|...++++++.|-+|++||-+.. .+.+++++| ..-|..++
T Consensus 89 --------------------kV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH-~HyVMqv~ 147 (794)
T KOG0276|consen 89 --------------------KVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGH-EHYVMQVA 147 (794)
T ss_pred --------------------eeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCc-ceEEEEEE
Confidence 78999999999999999999999999999999999998765 456667766 46899999
Q ss_pred Ecc-CCcEEEEECCCCeEEEEEeCCce--eeeeecCCceeEEEecCCC--CEEEEeCCCCeEEEEECCCCceEEEecCCC
Q 040361 292 ASR-HGRIVLYGDDDLSLHLFSINGKH--LASSESNGRLNCLELSACG--QFLVCGGDQGQIVVRSMNSLEVVRRYSGVG 366 (413)
Q Consensus 292 ~~~-~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~--~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~ 366 (413)
|+| |.+.+++++-|++|++|.+.... ....+|...|+|+.+-+.| .+|++|++|..|+|||.++..++.++.+|.
T Consensus 148 fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt 227 (794)
T KOG0276|consen 148 FNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHT 227 (794)
T ss_pred ecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhccc
Confidence 999 67899999999999999997432 2335799999999998765 599999999999999999999999999999
Q ss_pred CcEEEEEEccC-CeEEEEcCCCeEEEEEecCCccc
Q 040361 367 KIITSLAVTPE-ECFLAGTKDGCLLVYSIENRRTS 400 (413)
Q Consensus 367 ~~v~~~~~~~~-~~~l~~~~dg~i~vw~~~~~~~~ 400 (413)
..|..+.|+|. ..+++|++||++++|+-.+-+..
T Consensus 228 ~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE 262 (794)
T KOG0276|consen 228 NNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLE 262 (794)
T ss_pred ccceEEEecCCCcEEEEecCCccEEEecCcceehh
Confidence 99999999999 55668999999999998886554
No 54
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-31 Score=208.22 Aligned_cols=242 Identities=15% Similarity=0.174 Sum_probs=203.0
Q ss_pred cceecceeEEEEecCCCCEEEEeecCCCeEEEEEcC-CCcEEEEeecCCCeEEEEEECC-CCCEEEEccCCCcEEEEEec
Q 040361 129 SFELGSQCFTTMQTPSENFLITCGNWENSFQVIALN-DGRVVQSIRQHRDVVSCVAVTT-DGSILATGSYDTTVMVWEVI 206 (413)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~-~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~dg~i~iw~~~ 206 (413)
++......+.++|++.....+++++.||+++|||+. ..++++.++.|..+|.++.|++ +++.++++|.|++|++|+..
T Consensus 56 s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~ 135 (311)
T KOG0277|consen 56 SYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPN 135 (311)
T ss_pred eeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCC
Confidence 444466778899999877776666669999999964 3567889999999999999998 56678889999999999998
Q ss_pred cccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEec-CCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCC
Q 040361 207 RARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSV-ELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGS 285 (413)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 285 (413)
.++ .+.++.+|..-|...+|+| ..+++++++.|+.+++||++.......+..| ..
T Consensus 136 r~~-----------------------Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah-~~ 191 (311)
T KOG0277|consen 136 RPN-----------------------SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAH-NS 191 (311)
T ss_pred CCc-----------------------ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEec-cc
Confidence 877 6889999999999999999 5679999999999999999865544457766 46
Q ss_pred ceeeEEEcc-CCcEEEEECCCCeEEEEEeCCcee---eeeecCCceeEEEecCCC-CEEEEeCCCCeEEEEECCCC-ceE
Q 040361 286 ALSKLAASR-HGRIVLYGDDDLSLHLFSINGKHL---ASSESNGRLNCLELSACG-QFLVCGGDQGQIVVRSMNSL-EVV 359 (413)
Q Consensus 286 ~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~---~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~v~d~~~~-~~~ 359 (413)
.+.++.|+. +.+.+++|+.|+.|+.||++.-+. ...+|...|..+.|||.. ..|++++.|-+++|||.... ..+
T Consensus 192 Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~ 271 (311)
T KOG0277|consen 192 EILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAI 271 (311)
T ss_pred eeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhh
Confidence 899999988 677899999999999999984322 235788899999999975 68999999999999998854 455
Q ss_pred EEecCCCCcEEEEEEccC--CeEEEEcCCCeEEEEEe
Q 040361 360 RRYSGVGKIITSLAVTPE--ECFLAGTKDGCLLVYSI 394 (413)
Q Consensus 360 ~~~~~~~~~v~~~~~~~~--~~~l~~~~dg~i~vw~~ 394 (413)
.+...|+.-+..+.|++- +++++++.|+.++||+.
T Consensus 272 e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 272 ETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 667789999999999986 45666999999999984
No 55
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=2.8e-30 Score=202.09 Aligned_cols=264 Identities=19% Similarity=0.250 Sum_probs=213.3
Q ss_pred ecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEecccccc
Q 040361 132 LGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAP 211 (413)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~ 211 (413)
|..++..+.|..+|+.|+.|+- |....+|-..+|+.+.++.+|.+.|+|+..+.+.++|+||+.|.++++||+++++..
T Consensus 9 HERplTqiKyN~eGDLlFscaK-D~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~l 87 (327)
T KOG0643|consen 9 HERPLTQIKYNREGDLLFSCAK-DSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQL 87 (327)
T ss_pred CccccceEEecCCCcEEEEecC-CCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEE
Confidence 5667788999999999988765 999999998899999999999999999999999999999999999999999999843
Q ss_pred cc-----ccccceeecCCCc-------------------------eeeecCceeeeecCCCCeEEEEEecCCCEEEEeeC
Q 040361 212 EK-----RVRNMQIEAPRKD-------------------------YVIVETPFHILCGHDDIITCLYVSVELDIVISGSK 261 (413)
Q Consensus 212 ~~-----~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~ 261 (413)
.. .++...+....+. ....+.|...+..+...++.+-|.|-++.+++|.+
T Consensus 88 a~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe 167 (327)
T KOG0643|consen 88 ATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHE 167 (327)
T ss_pred EEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecC
Confidence 21 2222222221111 11235567788888999999999999999999999
Q ss_pred CCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCc-eeeeeecCCceeEEEecCCCCEEE
Q 040361 262 DGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGK-HLASSESNGRLNCLELSACGQFLV 340 (413)
Q Consensus 262 dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~i~~~~~s~~~~~l~ 340 (413)
||.|..||+++|+....-...+...|+.+.++++..++++++.|.+-++||...- .++......++++.+++|..+.++
T Consensus 168 ~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~Vi 247 (327)
T KOG0643|consen 168 DGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVI 247 (327)
T ss_pred CCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecccccceEE
Confidence 9999999999987655554444669999999999999999999999999999854 445577889999999999988887
Q ss_pred EeCCCCeE--------------EEEECCCCceEEEecCCCCcEEEEEEccCCeEE-EEcCCCeEEEEEecC
Q 040361 341 CGGDQGQI--------------VVRSMNSLEVVRRYSGVGKIITSLAVTPEECFL-AGTKDGCLLVYSIEN 396 (413)
Q Consensus 341 ~~~~dg~i--------------~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~dg~i~vw~~~~ 396 (413)
.|+..... ++|++-..+.+..+++|-++|++++|+|+|+.. +|++||.|++..++.
T Consensus 248 lgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 248 LGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred ecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 77643322 222322335567788999999999999999755 699999999987754
No 56
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=6.4e-30 Score=250.53 Aligned_cols=240 Identities=14% Similarity=0.262 Sum_probs=200.5
Q ss_pred eecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCC----c----EEEEeecCCCeEEEEEECC-CCCEEEEccCCCcEE
Q 040361 131 ELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDG----R----VVQSIRQHRDVVSCVAVTT-DGSILATGSYDTTVM 201 (413)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~----~----~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~dg~i~ 201 (413)
.+...+.++.|+|++++++++| .|+.|+||+.... . ....+. +...|.+++|++ ++.+|++++.||+|+
T Consensus 481 ~~~~~V~~i~fs~dg~~latgg-~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~ 558 (793)
T PLN00181 481 NSSNLVCAIGFDRDGEFFATAG-VNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQ 558 (793)
T ss_pred CCCCcEEEEEECCCCCEEEEEe-CCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEE
Confidence 3567788899999999877755 4999999997532 1 122333 456799999987 478999999999999
Q ss_pred EEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEec-CCCEEEEeeCCCcEEEEEccCCeEEEEEe
Q 040361 202 VWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSV-ELDIVISGSKDGTCVFHTLREGRYVRSLC 280 (413)
Q Consensus 202 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 280 (413)
+||+.+++ .+..+.+|.+.|++++|+| ++.+|++|+.||.|++||++++..+..+.
T Consensus 559 lWd~~~~~-----------------------~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~ 615 (793)
T PLN00181 559 VWDVARSQ-----------------------LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK 615 (793)
T ss_pred EEECCCCe-----------------------EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe
Confidence 99998776 5677889999999999997 78899999999999999999999888887
Q ss_pred CCCCCceeeEEEc-cCCcEEEEECCCCeEEEEEeCCce--e-eeeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCC-
Q 040361 281 HPSGSALSKLAAS-RHGRIVLYGDDDLSLHLFSINGKH--L-ASSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNS- 355 (413)
Q Consensus 281 ~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~i~d~~~~~--~-~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~- 355 (413)
.+ ..+.++.|+ +++.++++|+.|+.|++||++... + ....|...|.++.|. ++.+|++++.|+.|++||+..
T Consensus 616 ~~--~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~ 692 (793)
T PLN00181 616 TK--ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMS 692 (793)
T ss_pred cC--CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCC
Confidence 54 368889985 579999999999999999997432 2 234688899999997 788999999999999999974
Q ss_pred -----CceEEEecCCCCcEEEEEEccCCeEE-EEcCCCeEEEEEecCCc
Q 040361 356 -----LEVVRRYSGVGKIITSLAVTPEECFL-AGTKDGCLLVYSIENRR 398 (413)
Q Consensus 356 -----~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~dg~i~vw~~~~~~ 398 (413)
.+.+..+.+|...+..++|+|++.++ +|+.|+.|++|+.....
T Consensus 693 ~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~ 741 (793)
T PLN00181 693 ISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPM 741 (793)
T ss_pred ccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCC
Confidence 35678899999999999999997666 59999999999987654
No 57
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=7.3e-31 Score=223.05 Aligned_cols=290 Identities=16% Similarity=0.143 Sum_probs=217.0
Q ss_pred EEEeeccCCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCC
Q 040361 86 VKMWLTTQLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALND 165 (413)
Q Consensus 86 ~~~~~~~~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~ 165 (413)
.++..+..+-|.|-.+++|+.|..+++|+..--...+.....-.-.....+.++.|++.++.+++... ....+|+|-..
T Consensus 167 tk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg-~aqakl~DRdG 245 (641)
T KOG0772|consen 167 TKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSG-SAQAKLLDRDG 245 (641)
T ss_pred ceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEec-CcceeEEccCC
Confidence 44556667899999999999999999986322221111110000011345778889999988777655 77899999654
Q ss_pred CcEEEE------------eecCCCeEEEEEECCC-CCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecC
Q 040361 166 GRVVQS------------IRQHRDVVSCVAVTTD-GSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVET 232 (413)
Q Consensus 166 ~~~~~~------------~~~h~~~v~~~~~~~~-~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (413)
.+.... -+||...++|.+|+|+ ...++|++.||++++||+...+...+.++
T Consensus 246 ~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik---------------- 309 (641)
T KOG0772|consen 246 FEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIK---------------- 309 (641)
T ss_pred ceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEe----------------
Confidence 333322 2589999999999995 56789999999999999987763211111
Q ss_pred ceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCe--EEEEEeCCC--CCceeeEEEccCCcEEEEECCCCeE
Q 040361 233 PFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGR--YVRSLCHPS--GSALSKLAASRHGRIVLYGDDDLSL 308 (413)
Q Consensus 233 ~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i 308 (413)
.....+..-+++.++|+++++++|+|+.||.|.+|+..+.. ....+...| +..|+++.|+++|++|++-+.|+++
T Consensus 310 -~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tL 388 (641)
T KOG0772|consen 310 -TKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTL 388 (641)
T ss_pred -eccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCce
Confidence 01112344578999999999999999999999999985432 222333222 3489999999999999999999999
Q ss_pred EEEEeCC--ceeee---eecCCceeEEEecCCCCEEEEeC------CCCeEEEEECCCCceEEEecCCCCcEEEEEEccC
Q 040361 309 HLFSING--KHLAS---SESNGRLNCLELSACGQFLVCGG------DQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPE 377 (413)
Q Consensus 309 ~i~d~~~--~~~~~---~~~~~~i~~~~~s~~~~~l~~~~------~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~ 377 (413)
++||++. +.+.. .....+-+.++|||+.++|++|. ..|.+.+||..+.+.+.++.-....|..+.|+|.
T Consensus 389 KvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~Whpk 468 (641)
T KOG0772|consen 389 KVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPK 468 (641)
T ss_pred eeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecch
Confidence 9999983 33332 23445678899999999999985 3578999999999999998877888999999998
Q ss_pred -CeEEEEcCCCeEEEEE
Q 040361 378 -ECFLAGTKDGCLLVYS 393 (413)
Q Consensus 378 -~~~l~~~~dg~i~vw~ 393 (413)
+++++|+.||++++|=
T Consensus 469 LNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 469 LNQIFAGSGDGTAHVYY 485 (641)
T ss_pred hhheeeecCCCceEEEE
Confidence 8899999999999864
No 58
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.98 E-value=1.7e-30 Score=230.22 Aligned_cols=283 Identities=16% Similarity=0.277 Sum_probs=228.9
Q ss_pred CCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEe
Q 040361 93 QLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSI 172 (413)
Q Consensus 93 ~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~ 172 (413)
.+|.+...+++|+.+ .+++| +........ .+. ...+.+..|.|.+++++. |...|.+.+||+.+...+.++
T Consensus 380 ~vS~d~~~~~Sga~~-SikiW----n~~t~kciR--Ti~-~~y~l~~~Fvpgd~~Iv~-G~k~Gel~vfdlaS~~l~Eti 450 (888)
T KOG0306|consen 380 CVSSDSILLASGAGE-SIKIW----NRDTLKCIR--TIT-CGYILASKFVPGDRYIVL-GTKNGELQVFDLASASLVETI 450 (888)
T ss_pred EeecCceeeeecCCC-cEEEE----EccCcceeE--Eec-cccEEEEEecCCCceEEE-eccCCceEEEEeehhhhhhhh
Confidence 467777777776554 55664 333221111 111 225677777887777766 777999999999999999999
Q ss_pred ecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecC
Q 040361 173 RQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVE 252 (413)
Q Consensus 173 ~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~ 252 (413)
++|.+.|..++.+||++.++|||.|.+|++||+.-....... ...+..-....++ .-+..|.|+.+|||
T Consensus 451 ~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt----------~~k~lsl~~~rtL-el~ddvL~v~~Spd 519 (888)
T KOG0306|consen 451 RAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGT----------QKKVLSLKHTRTL-ELEDDVLCVSVSPD 519 (888)
T ss_pred hccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcc----------cceeeeeccceEE-eccccEEEEEEcCC
Confidence 999999999999999999999999999999998644321000 0000000011222 35678999999999
Q ss_pred CCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeC-Cceeee-eecCCceeEE
Q 040361 253 LDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSIN-GKHLAS-SESNGRLNCL 330 (413)
Q Consensus 253 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~-~~~~~~i~~~ 330 (413)
+++|+.+--|.++++|-+.+.+...++.+| .-+|.++.++||++.+++|+.|..|++|-++ |....+ ..|+..|.++
T Consensus 520 gk~LaVsLLdnTVkVyflDtlKFflsLYGH-kLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V 598 (888)
T KOG0306|consen 520 GKLLAVSLLDNTVKVYFLDTLKFFLSLYGH-KLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSV 598 (888)
T ss_pred CcEEEEEeccCeEEEEEecceeeeeeeccc-ccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEE
Confidence 999999999999999999999999888877 5799999999999999999999999999998 666555 6799999999
Q ss_pred EecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEccCCeEE-EEcCCCeEEEEEecC
Q 040361 331 ELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFL-AGTKDGCLLVYSIEN 396 (413)
Q Consensus 331 ~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~dg~i~vw~~~~ 396 (413)
.|.|...++++++.|+.|+-||-...+.+..+.+|...|++++.+|+|.++ +++.|.+|++|.-..
T Consensus 599 ~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 599 QFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred EEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 999999999999999999999999999999999999999999999998666 699999999999765
No 59
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=1.3e-30 Score=220.23 Aligned_cols=240 Identities=21% Similarity=0.356 Sum_probs=202.4
Q ss_pred ceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCC-CCEEEEccCCCcEEEEEeccc
Q 040361 130 FELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTD-GSILATGSYDTTVMVWEVIRA 208 (413)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~dg~i~iw~~~~~ 208 (413)
..+...+.++.|-+||..+++ |...|.|+|||+.+...+..+.+|+.+|..+.|+|+ +..|++|+.|+.+++||+.+.
T Consensus 65 srFk~~v~s~~fR~DG~Llaa-GD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a 143 (487)
T KOG0310|consen 65 SRFKDVVYSVDFRSDGRLLAA-GDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA 143 (487)
T ss_pred HhhccceeEEEeecCCeEEEc-cCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc
Confidence 344667778888888876665 767999999997776677889999999999999995 667889999999999999887
Q ss_pred cccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecC-CCEEEEeeCCCcEEEEEccCC-eEEEEEeCCCCCc
Q 040361 209 RAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVE-LDIVISGSKDGTCVFHTLREG-RYVRSLCHPSGSA 286 (413)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~~ 286 (413)
. ....+.+|++.|.|.+|+|. ..+++||+.||.|++||++.. ..+.++.+ +.+
T Consensus 144 ~-----------------------v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnh--g~p 198 (487)
T KOG0310|consen 144 Y-----------------------VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNH--GCP 198 (487)
T ss_pred E-----------------------EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecC--CCc
Confidence 6 34578899999999999995 458999999999999999987 56666654 569
Q ss_pred eeeEEEccCCcEEEEECCCCeEEEEEeC-Cceeee--eecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEec
Q 040361 287 LSKLAASRHGRIVLYGDDDLSLHLFSIN-GKHLAS--SESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYS 363 (413)
Q Consensus 287 v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~--~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~ 363 (413)
|.++.+-|.|..|++++.+ .+++||+- |.+... ..|...|+|+.+..++..|++|+-|+.|++||+.+.+.+..+.
T Consensus 199 Ve~vl~lpsgs~iasAgGn-~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~ 277 (487)
T KOG0310|consen 199 VESVLALPSGSLIASAGGN-SVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK 277 (487)
T ss_pred eeeEEEcCCCCEEEEcCCC-eEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee
Confidence 9999999999999988864 89999998 544433 3489999999999999999999999999999999999998887
Q ss_pred CCCCcEEEEEEccCCe-EEEEcCCCeEEEEEecCC
Q 040361 364 GVGKIITSLAVTPEEC-FLAGTKDGCLLVYSIENR 397 (413)
Q Consensus 364 ~~~~~v~~~~~~~~~~-~l~~~~dg~i~vw~~~~~ 397 (413)
..++|.+++.+|+++ +++|..||.+.+=+...+
T Consensus 278 -~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k 311 (487)
T KOG0310|consen 278 -YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVK 311 (487)
T ss_pred -cccceeeEEecCCCceEEEecccceeeeehhhcc
Confidence 678999999999965 556889998877654443
No 60
>PTZ00421 coronin; Provisional
Probab=99.98 E-value=1.2e-29 Score=230.61 Aligned_cols=224 Identities=15% Similarity=0.191 Sum_probs=182.1
Q ss_pred ceecceeEEEEecC-CCCEEEEeecCCCeEEEEEcCCC-------cEEEEeecCCCeEEEEEECCCC-CEEEEccCCCcE
Q 040361 130 FELGSQCFTTMQTP-SENFLITCGNWENSFQVIALNDG-------RVVQSIRQHRDVVSCVAVTTDG-SILATGSYDTTV 200 (413)
Q Consensus 130 ~~~~~~~~~~~~~~-~~~~l~~~g~~d~~i~i~~~~~~-------~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~dg~i 200 (413)
..|.+.+.++.|+| +++.| ++|+.|+.|++||+.++ +.+..+.+|...|.+++|+|++ ++|++|+.|++|
T Consensus 72 ~GH~~~V~~v~fsP~d~~~L-aSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtV 150 (493)
T PTZ00421 72 LGQEGPIIDVAFNPFDPQKL-FTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVV 150 (493)
T ss_pred eCCCCCEEEEEEcCCCCCEE-EEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEE
Confidence 34577899999999 55554 55667999999999765 3567888999999999999975 699999999999
Q ss_pred EEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEe
Q 040361 201 MVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLC 280 (413)
Q Consensus 201 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 280 (413)
++||+.++. ....+.+|...|.+++|+|++++|++++.|+.|++||+++++.+..+.
T Consensus 151 rIWDl~tg~-----------------------~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~ 207 (493)
T PTZ00421 151 NVWDVERGK-----------------------AVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVE 207 (493)
T ss_pred EEEECCCCe-----------------------EEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEe
Confidence 999998876 567788999999999999999999999999999999999999988887
Q ss_pred CCCCCceeeEEEccCCcEEEEEC----CCCeEEEEEeCC--ceeeee--ecCCceeEEEecCCCCEEEEeC-CCCeEEEE
Q 040361 281 HPSGSALSKLAASRHGRIVLYGD----DDLSLHLFSING--KHLASS--ESNGRLNCLELSACGQFLVCGG-DQGQIVVR 351 (413)
Q Consensus 281 ~~~~~~v~~~~~~~~~~~l~~~~----~d~~i~i~d~~~--~~~~~~--~~~~~i~~~~~s~~~~~l~~~~-~dg~i~v~ 351 (413)
.+.+.....+.|.+++..+++++ .|+.|++||++. ..+... .....+....|++++++|++|+ .|+.|++|
T Consensus 208 ~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriw 287 (493)
T PTZ00421 208 AHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCF 287 (493)
T ss_pred cCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEE
Confidence 76554556778888877777653 478999999973 222222 2334556677999999998887 59999999
Q ss_pred ECCCCceEEEecC-CCCcEEEEEEccC
Q 040361 352 SMNSLEVVRRYSG-VGKIITSLAVTPE 377 (413)
Q Consensus 352 d~~~~~~~~~~~~-~~~~v~~~~~~~~ 377 (413)
|+.+++.+..... +..++..++|.|.
T Consensus 288 dl~~~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 288 ELMNERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred EeeCCceEEEeeccCCCCCcceEeccc
Confidence 9999887766543 4567888999986
No 61
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.98 E-value=2.7e-30 Score=234.91 Aligned_cols=267 Identities=22% Similarity=0.323 Sum_probs=223.2
Q ss_pred CceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCC
Q 040361 98 GNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRD 177 (413)
Q Consensus 98 ~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~ 177 (413)
..++++++.|+++.+| +............+|.+.+.++.+.. +..++++|+.|.++++||..+|++...+.+|.+
T Consensus 218 ~~~~~~~s~~~tl~~~----~~~~~~~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~s 292 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLW----DLNNGYLILTRLVGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCSTGECTHSLQGHTS 292 (537)
T ss_pred cCeEEecCCCceeEEe----ecccceEEEeeccCCCCCceeEEEec-CCCEEEEEecCCcEEeEecCCCcEEEEecCCCc
Confidence 5788899999999885 33332233333455566777776665 555666688899999999999999999999999
Q ss_pred eEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEE
Q 040361 178 VVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVI 257 (413)
Q Consensus 178 ~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~ 257 (413)
.|.++... ...+++|+.|.+|++|++.++. .+..+.+|.++|.++..+ +.+++
T Consensus 293 tv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~-----------------------~l~l~~~h~~~V~~v~~~--~~~lv 345 (537)
T KOG0274|consen 293 SVRCLTID--PFLLVSGSRDNTVKVWDVTNGA-----------------------CLNLLRGHTGPVNCVQLD--EPLLV 345 (537)
T ss_pred eEEEEEcc--CceEeeccCCceEEEEeccCcc-----------------------eEEEeccccccEEEEEec--CCEEE
Confidence 99999885 4578899999999999999887 678888899999999987 77999
Q ss_pred EeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCc--eeeee-ecCCceeEEEecC
Q 040361 258 SGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGK--HLASS-ESNGRLNCLELSA 334 (413)
Q Consensus 258 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~-~~~~~i~~~~~s~ 334 (413)
+|+.|++|++||+.+++++.++..| ...|.++.+... ..+++|+.|+.|++||+++. .+... .|..-+..+.+
T Consensus 346 sgs~d~~v~VW~~~~~~cl~sl~gH-~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~-- 421 (537)
T KOG0274|consen 346 SGSYDGTVKVWDPRTGKCLKSLSGH-TGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL-- 421 (537)
T ss_pred EEecCceEEEEEhhhceeeeeecCC-cceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--
Confidence 9999999999999999999999986 458999988766 89999999999999999966 33333 45555544444
Q ss_pred CCCEEEEeCCCCeEEEEECCCCceEEEecC-CCCcEEEEEEccCCeEEEEcCCCeEEEEEecCCcccc
Q 040361 335 CGQFLVCGGDQGQIVVRSMNSLEVVRRYSG-VGKIITSLAVTPEECFLAGTKDGCLLVYSIENRRTSL 401 (413)
Q Consensus 335 ~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~dg~i~vw~~~~~~~~~ 401 (413)
.+++|++++.|+.|++||..++++++.+.+ |...|..+++. +..+++++.||.+++||+++++...
T Consensus 422 ~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~-~~~il~s~~~~~~~l~dl~~~~~~~ 488 (537)
T KOG0274|consen 422 RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG-KEEILCSSDDGSVKLWDLRSGTLIR 488 (537)
T ss_pred ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC-cceEEEEecCCeeEEEecccCchhh
Confidence 688999999999999999999999999998 67889999887 5678899999999999999987654
No 62
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.98 E-value=2.6e-30 Score=205.68 Aligned_cols=238 Identities=15% Similarity=0.285 Sum_probs=197.7
Q ss_pred cceeEEEEecCCCCEEEEeecCCCeEEEEEcCC-CcEE-EEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccc
Q 040361 133 GSQCFTTMQTPSENFLITCGNWENSFQVIALND-GRVV-QSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARA 210 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~-~~~~-~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~ 210 (413)
...+-.+.|+|....++++|++||+||+|+++. |..+ +....|.++|.+++|+.||..+++|+.|+.+++||+.+++
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q- 105 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ- 105 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-
Confidence 355678899998889998999999999999976 4444 3345699999999999999999999999999999999987
Q ss_pred cccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCC--EEEEeeCCCcEEEEEccCCeEEEEEeCCCCCcee
Q 040361 211 PEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELD--IVISGSKDGTCVFHTLREGRYVRSLCHPSGSALS 288 (413)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~ 288 (413)
...+..|.++|.++.|-+... .|++|+.|.+|+.||++...++.++..+. .+.
T Consensus 106 -----------------------~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe--RvY 160 (347)
T KOG0647|consen 106 -----------------------VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE--RVY 160 (347)
T ss_pred -----------------------eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc--eee
Confidence 677889999999999987655 89999999999999999999999998875 454
Q ss_pred eEEEccCCcEEEEECCCCeEEEEEeCCceee----eeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCC--ceEEEe
Q 040361 289 KLAASRHGRIVLYGDDDLSLHLFSINGKHLA----SSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSL--EVVRRY 362 (413)
Q Consensus 289 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~----~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~--~~~~~~ 362 (413)
++.. ...+++++..++.|.+|++++.... .......+.|++..+|.+..+.|+-+|.+-|..+..+ +.-..|
T Consensus 161 a~Dv--~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtF 238 (347)
T KOG0647|consen 161 AADV--LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTF 238 (347)
T ss_pred ehhc--cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeE
Confidence 4433 3567888999999999999743322 2345667899999999988899999999999988876 333455
Q ss_pred cCCCC---------cEEEEEEccC-CeEEEEcCCCeEEEEEecCCc
Q 040361 363 SGVGK---------IITSLAVTPE-ECFLAGTKDGCLLVYSIENRR 398 (413)
Q Consensus 363 ~~~~~---------~v~~~~~~~~-~~~l~~~~dg~i~vw~~~~~~ 398 (413)
+.|.. .|++++|+|. |.+++++.||++.+||-+...
T Consensus 239 kCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~ 284 (347)
T KOG0647|consen 239 KCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDART 284 (347)
T ss_pred EEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhh
Confidence 55542 5889999998 788899999999999977643
No 63
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=8.8e-31 Score=235.50 Aligned_cols=240 Identities=15% Similarity=0.273 Sum_probs=198.2
Q ss_pred eecceeEEEEecCCCCEEEEeecCCCeEEEEEcCC--------------------------------C------------
Q 040361 131 ELGSQCFTTMQTPSENFLITCGNWENSFQVIALND--------------------------------G------------ 166 (413)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~--------------------------------~------------ 166 (413)
.|.+.|.++.|+++|++|+.+|- |+.|+||.+.. .
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGe-D~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGE-DGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCC-CceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence 46788999999999999998665 99999998644 0
Q ss_pred ----------------cEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeee
Q 040361 167 ----------------RVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIV 230 (413)
Q Consensus 167 ----------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (413)
++++.+.||.+.|..+.|+.+ ++|+++|.|.+|++|++....
T Consensus 344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~--------------------- 401 (712)
T KOG0283|consen 344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKE--------------------- 401 (712)
T ss_pred CCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcc---------------------
Confidence 133455699999999999976 589999999999999998776
Q ss_pred cCceeeeecCCCCeEEEEEec-CCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEE
Q 040361 231 ETPFHILCGHDDIITCLYVSV-ELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLH 309 (413)
Q Consensus 231 ~~~~~~~~~h~~~i~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 309 (413)
++..| .|.+-|+|++|+| |.++|++|+-||.|+||++...+.+.-...+ .-|+++++.|+|+..++|+.+|.++
T Consensus 402 --CL~~F-~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~--~lITAvcy~PdGk~avIGt~~G~C~ 476 (712)
T KOG0283|consen 402 --CLKVF-SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR--DLITAVCYSPDGKGAVIGTFNGYCR 476 (712)
T ss_pred --eeeEE-ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhh--hhheeEEeccCCceEEEEEeccEEE
Confidence 55555 5999999999999 7789999999999999999877766554443 4799999999999999999999999
Q ss_pred EEEeCCceeeee----------ecCCceeEEEecCCC-CEEEEeCCCCeEEEEECCCCceEEEecCCCC--cEEEEEEcc
Q 040361 310 LFSINGKHLASS----------ESNGRLNCLELSACG-QFLVCGGDQGQIVVRSMNSLEVVRRYSGVGK--IITSLAVTP 376 (413)
Q Consensus 310 i~d~~~~~~~~~----------~~~~~i~~~~~s~~~-~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~--~v~~~~~~~ 376 (413)
+|+..+.++... .....|+.+.|.|.. ..+++.+.|..|+|||.++.+++..|+++.. .-....|+.
T Consensus 477 fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~ 556 (712)
T KOG0283|consen 477 FYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSS 556 (712)
T ss_pred EEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEcc
Confidence 999997665432 112379999999754 4577788899999999999899988987543 345668999
Q ss_pred CCeEE-EEcCCCeEEEEEecCCc
Q 040361 377 EECFL-AGTKDGCLLVYSIENRR 398 (413)
Q Consensus 377 ~~~~l-~~~~dg~i~vw~~~~~~ 398 (413)
||++| ++++|..|++|+.....
T Consensus 557 Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 557 DGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred CCCEEEEeecCceEEEEeCCCCc
Confidence 98766 58999999999986543
No 64
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.98 E-value=6.4e-32 Score=227.76 Aligned_cols=245 Identities=16% Similarity=0.280 Sum_probs=206.8
Q ss_pred eecceeEEEEecCCCCEEEEeecCCCeEEEEEcCC-CcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEecccc
Q 040361 131 ELGSQCFTTMQTPSENFLITCGNWENSFQVIALND-GRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRAR 209 (413)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~ 209 (413)
+|...+.++.|+|-...|+++++.|+.|+||++-. +++++++.+|..+|..++|+++|..++++|.|+.|++||+++++
T Consensus 212 gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~ 291 (503)
T KOG0282|consen 212 GHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQ 291 (503)
T ss_pred CCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccce
Confidence 44667788889997777777788899999999865 89999999999999999999999999999999999999999998
Q ss_pred ccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCC-CEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCcee
Q 040361 210 APEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVEL-DIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALS 288 (413)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~ 288 (413)
+...+. -...++|+.|+|++ +.+++|+.|+.|+.||+++++.++.+..+- ..|.
T Consensus 292 -----------------------~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hL-g~i~ 346 (503)
T KOG0282|consen 292 -----------------------VLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHL-GAIL 346 (503)
T ss_pred -----------------------EEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhh-hhee
Confidence 333332 44567899999988 899999999999999999999888887664 4899
Q ss_pred eEEEccCCcEEEEECCCCeEEEEEeCCceeee---eecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCC---ceEEEe
Q 040361 289 KLAASRHGRIVLYGDDDLSLHLFSINGKHLAS---SESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSL---EVVRRY 362 (413)
Q Consensus 289 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~---~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~---~~~~~~ 362 (413)
.+.|-++++.+++.+.|+.+++|+.+...... ........++..+|++.++++=+.|+.|.+|.+... ..-+.+
T Consensus 347 ~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~f 426 (503)
T KOG0282|consen 347 DITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRF 426 (503)
T ss_pred eeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhh
Confidence 99999999999999999999999998443332 234556778999999999999999999999987643 233556
Q ss_pred cCCC--CcEEEEEEccCCeEE-EEcCCCeEEEEEecCCccc
Q 040361 363 SGVG--KIITSLAVTPEECFL-AGTKDGCLLVYSIENRRTS 400 (413)
Q Consensus 363 ~~~~--~~v~~~~~~~~~~~l-~~~~dg~i~vw~~~~~~~~ 400 (413)
++|. +.-..+.|||||.+| +|..||.+.+||.++-+..
T Consensus 427 eGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~ 467 (503)
T KOG0282|consen 427 EGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLV 467 (503)
T ss_pred cceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhh
Confidence 7775 446778999998777 5999999999999886544
No 65
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.98 E-value=3.2e-30 Score=227.35 Aligned_cols=319 Identities=19% Similarity=0.263 Sum_probs=246.4
Q ss_pred EEecCCCCCCeEEEEeecCCcEEEEecCceE-----------EEEEeeccCCC-----------CCCceeeecCCCCccc
Q 040361 54 IICSTRHQPSGIVYVGMLDSSIVLVNQGLTL-----------SVKMWLTTQLQ-----------SGGNFTFSGSQDPFFG 111 (413)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~s-----------~~~~~l~~~~~d~~~~ 111 (413)
.+...+.+....+..-..|..+++|+..... ...+|....+. |- ..+.+++.|+++|
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~-~cF~TCSsD~TIR 405 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPR-GCFTTCSSDGTIR 405 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCc-cceeEecCCCcEE
Confidence 3455666666667777888999999955432 24477544322 21 2367999999999
Q ss_pred cCCCcCCCcc-------cCC-------------------------CCcccceecceeEEEEecCCCCEEEEeecCCCeEE
Q 040361 112 VGADILSPRN-------VGS-------------------------PLAESFELGSQCFTTMQTPSENFLITCGNWENSFQ 159 (413)
Q Consensus 112 ~~~~~~~~~~-------~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~ 159 (413)
+|+.+.-... ... .....+.....+.+++.+|++++|++ |..-|+++
T Consensus 406 lW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAs-GDr~Gnlr 484 (1080)
T KOG1408|consen 406 LWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLAS-GDRGGNLR 484 (1080)
T ss_pred EeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecc-cCccCceE
Confidence 9975441100 000 00011111345678889999999887 77789999
Q ss_pred EEEcCCCcEEEEeecCCCeEEEEEECC---CCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceee
Q 040361 160 VIALNDGRVVQSIRQHRDVVSCVAVTT---DGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHI 236 (413)
Q Consensus 160 i~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (413)
||++..-+....++.|..+|.|+.|+. ..++|++++.|..|.+||+.... .++++
T Consensus 485 Vy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny----------------------~l~qt 542 (1080)
T KOG1408|consen 485 VYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY----------------------DLVQT 542 (1080)
T ss_pred EEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccccc----------------------chhhh
Confidence 999999999999999999999999986 35789999999999999997665 26788
Q ss_pred eecCCCCeEEEEEecCC--CEEEEeeCCCcEEEEEccC---CeEE-EEEeCCCCCceeeEEEccCCcEEEEECCCCeEEE
Q 040361 237 LCGHDDIITCLYVSVEL--DIVISGSKDGTCVFHTLRE---GRYV-RSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHL 310 (413)
Q Consensus 237 ~~~h~~~i~~~~~~~~~--~~l~s~~~dg~i~vwd~~~---~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 310 (413)
+.+|...|+++.|--++ ..+++++.|..|.+=-.+. +... +....-....+..+++.|+.+++++++.|..|++
T Consensus 543 ld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrniri 622 (1080)
T KOG1408|consen 543 LDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRI 622 (1080)
T ss_pred hcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEE
Confidence 99999999999998776 6789999999876532221 2211 1111112346889999999999999999999999
Q ss_pred EEeC-Cceeeee----ecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEccCC-eEEEEc
Q 040361 311 FSIN-GKHLASS----ESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEE-CFLAGT 384 (413)
Q Consensus 311 ~d~~-~~~~~~~----~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~ 384 (413)
||++ ++....+ .+++....+...|.|.|+++...|.++.++|..+++++.++.+|...|+.+.|++|- .+++.+
T Consensus 623 f~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvs 702 (1080)
T KOG1408|consen 623 FDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVS 702 (1080)
T ss_pred EeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeec
Confidence 9998 5555543 466888999999999999999999999999999999999999999999999999995 577899
Q ss_pred CCCeEEEEEecC
Q 040361 385 KDGCLLVYSIEN 396 (413)
Q Consensus 385 ~dg~i~vw~~~~ 396 (413)
.||+|.||.+..
T Consensus 703 gDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 703 GDGCIFVWKLPL 714 (1080)
T ss_pred CCceEEEEECch
Confidence 999999999865
No 66
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.98 E-value=4.3e-30 Score=210.46 Aligned_cols=243 Identities=16% Similarity=0.275 Sum_probs=198.8
Q ss_pred CEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCC---CCEEEEccCCCcEEEEEeccccccccccccceeec
Q 040361 146 NFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTD---GSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEA 222 (413)
Q Consensus 146 ~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~ 222 (413)
...+.+|++||.+++||. .|+....+.+|.++|..++|... ...|++++.|.++++|.++.+.....
T Consensus 115 ~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~--------- 184 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVK--------- 184 (423)
T ss_pred CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhh---------
Confidence 345556888999999997 78999999999999998888543 33699999999999999988763222
Q ss_pred CCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccC-------------------------CeEEE
Q 040361 223 PRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLRE-------------------------GRYVR 277 (413)
Q Consensus 223 ~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~-------------------------~~~~~ 277 (413)
.+..-.||...|.+++..+++..+++|+.|.+|++|+..+ +.++.
T Consensus 185 ----------~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~v 254 (423)
T KOG0313|consen 185 ----------ALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLV 254 (423)
T ss_pred ----------HHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceE
Confidence 2333459999999999999999999999999999999321 12234
Q ss_pred EEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeC-CceeeeeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCC
Q 040361 278 SLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSIN-GKHLASSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSL 356 (413)
Q Consensus 278 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~ 356 (413)
.+.+| ..+|.++.|++ ...+++++.|.+|+.||+. +...........++++.++|..++|++|+.|..+++||.+++
T Consensus 255 tl~GH-t~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~ 332 (423)
T KOG0313|consen 255 TLEGH-TEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTG 332 (423)
T ss_pred Eeccc-ccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCC
Confidence 45555 46899999998 6789999999999999998 555556677889999999999999999999999999999875
Q ss_pred c---eEEEecCCCCcEEEEEEccCC--eEEEEcCCCeEEEEEecCCcccccccccccCC
Q 040361 357 E---VVRRYSGVGKIITSLAVTPEE--CFLAGTKDGCLLVYSIENRRTSLPRNVKSKAS 410 (413)
Q Consensus 357 ~---~~~~~~~~~~~v~~~~~~~~~--~~l~~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 410 (413)
. ...++.+|.+.|.++.|+|.. +|++|+.|+++++||+++.+.++.--..|..+
T Consensus 333 ~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DK 391 (423)
T KOG0313|consen 333 DGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDK 391 (423)
T ss_pred CCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCce
Confidence 3 447788999999999999984 56679999999999999988665444444443
No 67
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=1.6e-29 Score=197.19 Aligned_cols=274 Identities=14% Similarity=0.120 Sum_probs=223.7
Q ss_pred cCCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEE
Q 040361 92 TQLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQS 171 (413)
Q Consensus 92 ~~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~ 171 (413)
.+++.+|..+++|+.|+++++|..+-.... ......+|++.+-.++|.|...-++++++.|..|++||...+++...
T Consensus 26 v~wn~~g~~lasgs~dktv~v~n~e~~r~~---~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~ 102 (313)
T KOG1407|consen 26 VAWNCDGTKLASGSFDKTVSVWNLERDRFR---KELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTAR 102 (313)
T ss_pred EEEcccCceeeecccCCceEEEEecchhhh---hhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEE
Confidence 456889999999999999999754333111 11123345678888999999888888788799999999999999998
Q ss_pred eecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEec
Q 040361 172 IRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSV 251 (413)
Q Consensus 172 ~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~ 251 (413)
+....+.+ -+.|+|+|.+++.++.|..|...|.++.+ +..-......+..++|+.
T Consensus 103 i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~------------------------~~~~~~~~~e~ne~~w~~ 157 (313)
T KOG1407|consen 103 IETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYK------------------------IVNEEQFKFEVNEISWNN 157 (313)
T ss_pred eeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccc------------------------eeehhcccceeeeeeecC
Confidence 87655555 47899999999999999999999998776 222233455677888998
Q ss_pred CCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCceeee--eecCCceeE
Q 040361 252 ELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKHLAS--SESNGRLNC 329 (413)
Q Consensus 252 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~--~~~~~~i~~ 329 (413)
++++++.-...|+|.|......+++.+++.|. ....++.|+|+|+++++|+.|..+-+||++.-.... ..++-+|..
T Consensus 158 ~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~-snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRT 236 (313)
T KOG1407|consen 158 SNDLFFLTNGLGCVEILSYPSLKPVQSIKAHP-SNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRT 236 (313)
T ss_pred CCCEEEEecCCceEEEEeccccccccccccCC-cceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEE
Confidence 88888777778999999999999999998874 578889999999999999999999999998543322 467889999
Q ss_pred EEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEccCCeEEE-EcCC---------CeEEEEEec
Q 040361 330 LELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFLA-GTKD---------GCLLVYSIE 395 (413)
Q Consensus 330 ~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d---------g~i~vw~~~ 395 (413)
++|+.||++||+|++|..|-|=+.++|..+.+++ +.++...++|+|...+|+ ++.| |.+++|-+.
T Consensus 237 lSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 237 LSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred EEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCC
Confidence 9999999999999999999999999999999997 788999999999988886 4432 456666543
No 68
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=6.9e-29 Score=225.59 Aligned_cols=214 Identities=15% Similarity=0.203 Sum_probs=168.3
Q ss_pred EeecCCCeEEEEEECC-CCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEE
Q 040361 171 SIRQHRDVVSCVAVTT-DGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYV 249 (413)
Q Consensus 171 ~~~~h~~~v~~~~~~~-~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~ 249 (413)
.+.+|.+.|.+++|+| ++++|++|+.|++|++||+.+...... ...++..+.+|...|.+++|
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~----------------~~~~l~~L~gH~~~V~~l~f 133 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQN----------------ISDPIVHLQGHTKKVGIVSF 133 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccc----------------cCcceEEecCCCCcEEEEEe
Confidence 4678999999999999 889999999999999999976531100 01246778999999999999
Q ss_pred ecCC-CEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCC-ceeeee-ecCC-
Q 040361 250 SVEL-DIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSING-KHLASS-ESNG- 325 (413)
Q Consensus 250 ~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~-~~~~- 325 (413)
+|++ ++|++++.|+.|++||+++++.+..+..+ ...|.+++|+|++.+|++++.|+.|++||++. +.+... .|.+
T Consensus 134 ~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h-~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~ 212 (493)
T PTZ00421 134 HPSAMNVLASAGADMVVNVWDVERGKAVEVIKCH-SDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASA 212 (493)
T ss_pred CcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCC-CCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCC
Confidence 9975 69999999999999999999988888765 45799999999999999999999999999984 443332 3443
Q ss_pred ceeEEEecCCCCEEEEeC----CCCeEEEEECCCCc-eEEEecCC-CCcEEEEEEccCCeEE-EEc-CCCeEEEEEecCC
Q 040361 326 RLNCLELSACGQFLVCGG----DQGQIVVRSMNSLE-VVRRYSGV-GKIITSLAVTPEECFL-AGT-KDGCLLVYSIENR 397 (413)
Q Consensus 326 ~i~~~~~s~~~~~l~~~~----~dg~i~v~d~~~~~-~~~~~~~~-~~~v~~~~~~~~~~~l-~~~-~dg~i~vw~~~~~ 397 (413)
....+.|.+++..+++++ .|+.|++||+++.. .+.....+ ...+....|++++.++ +++ .|+.|++||+.++
T Consensus 213 ~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 213 KSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred cceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 345678888887777653 47899999998754 33333323 3456667789997654 455 6999999999987
Q ss_pred cccc
Q 040361 398 RTSL 401 (413)
Q Consensus 398 ~~~~ 401 (413)
+...
T Consensus 293 ~~~~ 296 (493)
T PTZ00421 293 RLTF 296 (493)
T ss_pred ceEE
Confidence 6544
No 69
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=7e-30 Score=235.56 Aligned_cols=282 Identities=15% Similarity=0.170 Sum_probs=229.4
Q ss_pred CCCCCCceeeecC--CCCccccCCCcCCC------c-ccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEc
Q 040361 93 QLQSGGNFTFSGS--QDPFFGVGADILSP------R-NVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIAL 163 (413)
Q Consensus 93 ~~s~~~~~l~~~~--~d~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~ 163 (413)
+.+|+|..+++|+ .|+..++|..+.-- . .+...+.....|.+.+.++.|++||++|++ |+.|+.|.||..
T Consensus 20 dv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAs-GSDD~~v~iW~~ 98 (942)
T KOG0973|consen 20 DVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLAS-GSDDRLVMIWER 98 (942)
T ss_pred EecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEee-ccCcceEEEeee
Confidence 3488999999999 88888887531110 1 134556666777888888899999999888 666999999987
Q ss_pred CC------------------CcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCC
Q 040361 164 ND------------------GRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRK 225 (413)
Q Consensus 164 ~~------------------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 225 (413)
.. .+....+.+|...|..++|+|++.+|++++.|++|.+|+..+..
T Consensus 99 ~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~---------------- 162 (942)
T KOG0973|consen 99 AEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFE---------------- 162 (942)
T ss_pred cccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccce----------------
Confidence 62 13667889999999999999999999999999999999998886
Q ss_pred ceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCC-----CceeeEEEccCCcEEE
Q 040361 226 DYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSG-----SALSKLAASRHGRIVL 300 (413)
Q Consensus 226 ~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~ 300 (413)
.+..+.+|.+.|..+.|.|-|++|++-+.|++|++|++.+....+.+..+.+ .....+.|+|||++|+
T Consensus 163 -------~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~la 235 (942)
T KOG0973|consen 163 -------LLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLA 235 (942)
T ss_pred -------eeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeec
Confidence 6889999999999999999999999999999999999888777777754432 3578899999999999
Q ss_pred EECC----CCeEEEEEeCCcee--eeeecCCceeEEEecCC-------------CC----EEEEeCCCCeEEEEECCCCc
Q 040361 301 YGDD----DLSLHLFSINGKHL--ASSESNGRLNCLELSAC-------------GQ----FLVCGGDQGQIVVRSMNSLE 357 (413)
Q Consensus 301 ~~~~----d~~i~i~d~~~~~~--~~~~~~~~i~~~~~s~~-------------~~----~l~~~~~dg~i~v~d~~~~~ 357 (413)
+... ...+.|.+-.+-.. ...+|..++.++.|+|. .+ .+|+|+.|++|.||.....+
T Consensus 236 s~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~R 315 (942)
T KOG0973|consen 236 SPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPR 315 (942)
T ss_pred chhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCC
Confidence 8643 34677777664443 34689999999999982 11 67899999999999998777
Q ss_pred eEEEec-CCCCcEEEEEEccCCe-EEEEcCCCeEEEEEecCCc
Q 040361 358 VVRRYS-GVGKIITSLAVTPEEC-FLAGTKDGCLLVYSIENRR 398 (413)
Q Consensus 358 ~~~~~~-~~~~~v~~~~~~~~~~-~l~~~~dg~i~vw~~~~~~ 398 (413)
++..+. -...+|..++|+|||. +++++.||+|.+..++..+
T Consensus 316 Pl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 316 PLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred chhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 765443 3467899999999986 5589999999999998754
No 70
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.4e-29 Score=202.72 Aligned_cols=240 Identities=17% Similarity=0.264 Sum_probs=198.4
Q ss_pred cceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCC--EEEEccCCCcEEEEEeccccc
Q 040361 133 GSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGS--ILATGSYDTTVMVWEVIRARA 210 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~s~dg~i~iw~~~~~~~ 210 (413)
...+.+++. ++ .++++|+.|.+|+|||+.+...+..+-.|.+.|+++.|.++.. .|++|+.||.|.+|+...-.
T Consensus 43 ~~sitavAV--s~-~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~- 118 (362)
T KOG0294|consen 43 AGSITALAV--SG-PYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWE- 118 (362)
T ss_pred ccceeEEEe--cc-eeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeE-
Confidence 344444443 34 4555677799999999999999999999999999999998754 89999999999999997766
Q ss_pred cccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeE
Q 040361 211 PEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKL 290 (413)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~ 290 (413)
.+..+++|.+.|+.++.+|.+++.++.+.|+.++.||+-+|+.-..+...+ ....+
T Consensus 119 ----------------------~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~--~at~v 174 (362)
T KOG0294|consen 119 ----------------------LLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN--KATLV 174 (362)
T ss_pred ----------------------EeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC--cceee
Confidence 788999999999999999999999999999999999999998877766543 34559
Q ss_pred EEccCCcEEEEECCCCeEEEEEeCCceee-eeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcE
Q 040361 291 AASRHGRIVLYGDDDLSLHLFSINGKHLA-SSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKII 369 (413)
Q Consensus 291 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v 369 (413)
.|+|.|.+++.+..+ .|-+|.++...+. .......+.|+.|- ++.+|++|.+|+.|.+||..+..+...+.+|...|
T Consensus 175 ~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RV 252 (362)
T KOG0294|consen 175 SWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRV 252 (362)
T ss_pred EEcCCCCEEEEEecc-EEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhhe
Confidence 999999998888876 6889998854433 34444667777775 67789999999999999999999999999999999
Q ss_pred EEEEEc--cCCeEE-EEcCCCeEEEEEecCCccccc
Q 040361 370 TSLAVT--PEECFL-AGTKDGCLLVYSIENRRTSLP 402 (413)
Q Consensus 370 ~~~~~~--~~~~~l-~~~~dg~i~vw~~~~~~~~~~ 402 (413)
.++.+- |++.++ +++.||.|++||++......+
T Consensus 253 K~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~ 288 (362)
T KOG0294|consen 253 KDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRP 288 (362)
T ss_pred eeeEEEecCCceEEEEeccCceEEEEEccccccCCc
Confidence 999854 335555 699999999999988644433
No 71
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=1.3e-28 Score=224.77 Aligned_cols=230 Identities=16% Similarity=0.168 Sum_probs=177.4
Q ss_pred ecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCC-CCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeee
Q 040361 152 GNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTD-GSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIV 230 (413)
Q Consensus 152 g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (413)
|+.++.+++|+......+..+.+|.+.|.+++|+|+ +++|++|+.|++|++||+.++...... .
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~---------------i 114 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKE---------------I 114 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccc---------------c
Confidence 556889999999888888899999999999999996 789999999999999999764311000 0
Q ss_pred cCceeeeecCCCCeEEEEEecCCCE-EEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEE
Q 040361 231 ETPFHILCGHDDIITCLYVSVELDI-VISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLH 309 (413)
Q Consensus 231 ~~~~~~~~~h~~~i~~~~~~~~~~~-l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 309 (413)
..++..+.+|...|.+++|+|++.. +++++.|+.|++||+++++.+..+.. ...|.+++|+++|.+|++++.|+.|+
T Consensus 115 ~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~--~~~V~SlswspdG~lLat~s~D~~Ir 192 (568)
T PTZ00420 115 KDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINM--PKKLSSLKWNIKGNLLSGTCVGKHMH 192 (568)
T ss_pred ccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEec--CCcEEEEEECCCCCEEEEEecCCEEE
Confidence 0145567899999999999998875 57899999999999999988777754 34799999999999999999999999
Q ss_pred EEEeCCce-eee-eecCCceeE-----EEecCCCCEEEEeCCCC----eEEEEECCC-CceEEEec--CCCCcEEEEEEc
Q 040361 310 LFSINGKH-LAS-SESNGRLNC-----LELSACGQFLVCGGDQG----QIVVRSMNS-LEVVRRYS--GVGKIITSLAVT 375 (413)
Q Consensus 310 i~d~~~~~-~~~-~~~~~~i~~-----~~~s~~~~~l~~~~~dg----~i~v~d~~~-~~~~~~~~--~~~~~v~~~~~~ 375 (413)
+||++... +.. ..|.+.+.+ ..|++++.+|++++.++ .|+|||+++ .+++..+. .+.+.+......
T Consensus 193 IwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~ 272 (568)
T PTZ00420 193 IIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDE 272 (568)
T ss_pred EEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeC
Confidence 99999443 333 245554332 34568989999877664 799999995 55565543 233333343334
Q ss_pred cCCeEE-EEcCCCeEEEEEecCCc
Q 040361 376 PEECFL-AGTKDGCLLVYSIENRR 398 (413)
Q Consensus 376 ~~~~~l-~~~~dg~i~vw~~~~~~ 398 (413)
+++.++ +|+.|++|++|++..+.
T Consensus 273 ~tg~l~lsGkGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 273 STGLIYLIGKGDGNCRYYQHSLGS 296 (568)
T ss_pred CCCCEEEEEECCCeEEEEEccCCc
Confidence 447644 69999999999998764
No 72
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.7e-28 Score=195.85 Aligned_cols=275 Identities=15% Similarity=0.187 Sum_probs=203.9
Q ss_pred CCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEee-cCCCeEEEEEcCCCcEEEE
Q 040361 93 QLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCG-NWENSFQVIALNDGRVVQS 171 (413)
Q Consensus 93 ~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~d~~i~i~~~~~~~~~~~ 171 (413)
.|+++|.++++++.|.++++++.. +.......... +-.+-.++|.+....++.+. -.|.+|+..++.+.+.++.
T Consensus 21 ~fs~~G~~litss~dDsl~LYd~~-~g~~~~ti~sk----kyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRY 95 (311)
T KOG1446|consen 21 DFSDDGLLLITSSEDDSLRLYDSL-SGKQVKTINSK----KYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRY 95 (311)
T ss_pred EecCCCCEEEEecCCCeEEEEEcC-CCceeeEeecc----cccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEE
Confidence 467778888887778787776432 11111111111 11233344555555555433 3488999999999999999
Q ss_pred eecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEec
Q 040361 172 IRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSV 251 (413)
Q Consensus 172 ~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~ 251 (413)
+.||...|+.++.+|-+..+++++.|++|++||++..+ +...+..... ..++|.|
T Consensus 96 F~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~-----------------------cqg~l~~~~~--pi~AfDp 150 (311)
T KOG1446|consen 96 FPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKK-----------------------CQGLLNLSGR--PIAAFDP 150 (311)
T ss_pred cCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCC-----------------------CceEEecCCC--cceeECC
Confidence 99999999999999999999999999999999998766 3333332223 3478999
Q ss_pred CCCEEEEeeCCCcEEEEEccCC--eEEEEEe--CCCCCceeeEEEccCCcEEEEECCCCeEEEEEeC-Cceeeeee-c--
Q 040361 252 ELDIVISGSKDGTCVFHTLREG--RYVRSLC--HPSGSALSKLAASRHGRIVLYGDDDLSLHLFSIN-GKHLASSE-S-- 323 (413)
Q Consensus 252 ~~~~l~s~~~dg~i~vwd~~~~--~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~-~-- 323 (413)
+|-++|++.....|++||++.. .+..++. .+.....+.+.|+|+|++++.++..+.+++.|-- |....... +
T Consensus 151 ~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~ 230 (311)
T KOG1446|consen 151 EGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPN 230 (311)
T ss_pred CCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccC
Confidence 9999999998889999999864 2333333 2334678999999999999999999999999975 55443332 1
Q ss_pred C-CceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecC-CCCcEEEEEEccCCeEEEEcCCCeEEEEEecCCc
Q 040361 324 N-GRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSG-VGKIITSLAVTPEECFLAGTKDGCLLVYSIENRR 398 (413)
Q Consensus 324 ~-~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~dg~i~vw~~~~~~ 398 (413)
. .-.....|+||++++++|+.||+|.+|++++++.+..+.+ +..++.++.|.|.-..+ .+.+..+.+|=....+
T Consensus 231 ~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf-~sa~s~l~fw~p~~~~ 306 (311)
T KOG1446|consen 231 AGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMF-VSASSNLVFWLPDEDA 306 (311)
T ss_pred CCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeee-eecCceEEEEeccccc
Confidence 1 1225778999999999999999999999999999999998 68899999999974333 3344678888766443
No 73
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=2.5e-30 Score=207.99 Aligned_cols=248 Identities=19% Similarity=0.338 Sum_probs=210.9
Q ss_pred cceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEe--------ecCCCeEEEEEECCCCCEEEEccCCCcEEEEE
Q 040361 133 GSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSI--------RQHRDVVSCVAVTTDGSILATGSYDTTVMVWE 204 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~--------~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~ 204 (413)
.+.+-+..|+|||++|+. |+.||-|.+||..+|+..+.+ -.+.++|.|++|+.|..+|++|+.||.|++|.
T Consensus 213 KSh~EcA~FSPDgqyLvs-gSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWr 291 (508)
T KOG0275|consen 213 KSHVECARFSPDGQYLVS-GSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWR 291 (508)
T ss_pred ccchhheeeCCCCceEee-ccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEE
Confidence 455677889999999887 777999999999999876544 34789999999999999999999999999999
Q ss_pred eccccccccccccceeecCCCceeeecCceeeee-cCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCC
Q 040361 205 VIRARAPEKRVRNMQIEAPRKDYVIVETPFHILC-GHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPS 283 (413)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 283 (413)
+.++. ++..+. .|...|+|+.|+.|+..+++++.|.++++.-+.+|+++..+.+|.
T Consensus 292 i~tG~-----------------------ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHs 348 (508)
T KOG0275|consen 292 IETGQ-----------------------CLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHS 348 (508)
T ss_pred Eecch-----------------------HHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCcc
Confidence 99998 566665 899999999999999999999999999999999999999999874
Q ss_pred CCceeeEEEccCCcEEEEECCCCeEEEEEeCC-ceeee---eecCCceeEEEecCCC-CEEEEeCCCCeEEEEECCCCce
Q 040361 284 GSALSKLAASRHGRIVLYGDDDLSLHLFSING-KHLAS---SESNGRLNCLELSACG-QFLVCGGDQGQIVVRSMNSLEV 358 (413)
Q Consensus 284 ~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~---~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~v~d~~~~~~ 358 (413)
+.|+...|.++|..+++++.||+|++|+.+. ..+.. ...+.+|+++..-|.+ ..++++...++|+|.++. |+.
T Consensus 349 -Syvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQv 426 (508)
T KOG0275|consen 349 -SYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQV 426 (508)
T ss_pred -ccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceE
Confidence 6899999999999999999999999999983 44333 3456788888887764 678888889999999986 678
Q ss_pred EEEecC---CCCcEEEEEEccCCeEE-EEcCCCeEEEEEecCCccccccccc
Q 040361 359 VRRYSG---VGKIITSLAVTPEECFL-AGTKDGCLLVYSIENRRTSLPRNVK 406 (413)
Q Consensus 359 ~~~~~~---~~~~v~~~~~~~~~~~l-~~~~dg~i~vw~~~~~~~~~~~~~~ 406 (413)
++.+.. ..+...+.+.+|.|.++ +.++|+.++.|.+.+|+......+.
T Consensus 427 VrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~Vh 478 (508)
T KOG0275|consen 427 VRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVH 478 (508)
T ss_pred EeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecc
Confidence 888753 23456677899998777 6899999999999999876554443
No 74
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=7.5e-30 Score=211.24 Aligned_cols=247 Identities=14% Similarity=0.218 Sum_probs=205.5
Q ss_pred eecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCC---cEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEecc
Q 040361 131 ELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDG---RVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIR 207 (413)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~ 207 (413)
.|..++..+.|+++|++|+.+ +.|.+..+|.+... +..+++.+|..+|..+.|+||.++|++|+.|..+.+||+.+
T Consensus 222 ~htdEVWfl~FS~nGkyLAsa-SkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~t 300 (519)
T KOG0293|consen 222 DHTDEVWFLQFSHNGKYLASA-SKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDT 300 (519)
T ss_pred hCCCcEEEEEEcCCCeeEeec-cCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCc
Confidence 457889999999999999885 45999999987543 44688899999999999999999999999999999999999
Q ss_pred ccccccccccceeecCCCceeeecCceeee-ecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCc
Q 040361 208 ARAPEKRVRNMQIEAPRKDYVIVETPFHIL-CGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSA 286 (413)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 286 (413)
+. ....+ .+|...+.+++|.||+..+++|+.|+.+..||+ .|......+.-....
T Consensus 301 gd-----------------------~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdl-Dgn~~~~W~gvr~~~ 356 (519)
T KOG0293|consen 301 GD-----------------------LRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDL-DGNILGNWEGVRDPK 356 (519)
T ss_pred ch-----------------------hhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecC-Ccchhhcccccccce
Confidence 87 22222 234578999999999999999999999999998 455555555444456
Q ss_pred eeeEEEccCCcEEEEECCCCeEEEEEeCCceee-eeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCC
Q 040361 287 LSKLAASRHGRIVLYGDDDLSLHLFSINGKHLA-SSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGV 365 (413)
Q Consensus 287 v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~ 365 (413)
|.++++.+||+++++.+.|..|++|+.+...-. ......++++.++|.+++++++.-.+..+++||+...+.+..+.||
T Consensus 357 v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Gh 436 (519)
T KOG0293|consen 357 VHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGH 436 (519)
T ss_pred eEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcc
Confidence 999999999999999999999999999854433 4567789999999999999999999999999999999999999998
Q ss_pred CCc--EEEEEEccC-CeEE-EEcCCCeEEEEEecCCccccc
Q 040361 366 GKI--ITSLAVTPE-ECFL-AGTKDGCLLVYSIENRRTSLP 402 (413)
Q Consensus 366 ~~~--v~~~~~~~~-~~~l-~~~~dg~i~vw~~~~~~~~~~ 402 (413)
... +..-+|--- ..|+ +|++|+.|+||+..+++....
T Consensus 437 kq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~ 477 (519)
T KOG0293|consen 437 KQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAV 477 (519)
T ss_pred cccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEe
Confidence 754 333345543 3566 599999999999999876643
No 75
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.5e-29 Score=196.65 Aligned_cols=226 Identities=16% Similarity=0.259 Sum_probs=191.3
Q ss_pred CCeEEEEEcCCCcEEEEeec--CCCeEEEEEECCC-CCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeec
Q 040361 155 ENSFQVIALNDGRVVQSIRQ--HRDVVSCVAVTTD-GSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVE 231 (413)
Q Consensus 155 d~~i~i~~~~~~~~~~~~~~--h~~~v~~~~~~~~-~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (413)
.|.+.|.++..++-+..+.. -.+.+..++|+++ .+.+++++.||++++||.....
T Consensus 37 ~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s---------------------- 94 (311)
T KOG0277|consen 37 NGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPS---------------------- 94 (311)
T ss_pred CceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCC----------------------
Confidence 68999999975555544432 5688999999985 6788999999999999964443
Q ss_pred CceeeeecCCCCeEEEEEec-CCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEcc-CCcEEEEECCCCeEE
Q 040361 232 TPFHILCGHDDIITCLYVSV-ELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASR-HGRIVLYGDDDLSLH 309 (413)
Q Consensus 232 ~~~~~~~~h~~~i~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~ 309 (413)
.|+..++.|...|.++.|++ +...+++++-|++|++|+....+.+.++.++ +..|....|+| .++.+++++.|+.++
T Consensus 95 ~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh-~~~Iy~a~~sp~~~nlfas~Sgd~~l~ 173 (311)
T KOG0277|consen 95 KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGH-NSCIYQAAFSPHIPNLFASASGDGTLR 173 (311)
T ss_pred cchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCC-ccEEEEEecCCCCCCeEEEccCCceEE
Confidence 37889999999999999998 4557888899999999999999999999886 56899999999 578999999999999
Q ss_pred EEEeC--CceeeeeecCCceeEEEecCC-CCEEEEeCCCCeEEEEECCCC-ceEEEecCCCCcEEEEEEccCC-eEE-EE
Q 040361 310 LFSIN--GKHLASSESNGRLNCLELSAC-GQFLVCGGDQGQIVVRSMNSL-EVVRRYSGVGKIITSLAVTPEE-CFL-AG 383 (413)
Q Consensus 310 i~d~~--~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~v~~~~~~~~~-~~l-~~ 383 (413)
+||++ |+.+....|...+.++.|+.- .+.+++|+.|+.|++||+++. .++.++.+|.-.|..+.|+|.. .+| ++
T Consensus 174 lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSa 253 (311)
T KOG0277|consen 174 LWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASA 253 (311)
T ss_pred EEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhc
Confidence 99998 777776778889999999974 578899999999999999975 4678889999999999999983 344 69
Q ss_pred cCCCeEEEEEecCCcccccc
Q 040361 384 TKDGCLLVYSIENRRTSLPR 403 (413)
Q Consensus 384 ~~dg~i~vw~~~~~~~~~~~ 403 (413)
+.|-++++||...+.....+
T Consensus 254 sYDmT~riw~~~~~ds~~e~ 273 (311)
T KOG0277|consen 254 SYDMTVRIWDPERQDSAIET 273 (311)
T ss_pred cccceEEecccccchhhhhh
Confidence 99999999999866544433
No 76
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=3.3e-30 Score=205.94 Aligned_cols=284 Identities=16% Similarity=0.252 Sum_probs=220.7
Q ss_pred ccCCCCCCceeeecCCCCccccCCCcC-----CC-------cccCCCCcc-cceecceeEEEEecCCCCEEEEeecCCCe
Q 040361 91 TTQLQSGGNFTFSGSQDPFFGVGADIL-----SP-------RNVGSPLAE-SFELGSQCFTTMQTPSENFLITCGNWENS 157 (413)
Q Consensus 91 ~~~~s~~~~~l~~~~~d~~~~~~~~~~-----~~-------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~g~~d~~ 157 (413)
...|||||.++++|+.|..+++.+.+- .+ .....++.+ ...|...+..+.|.|....|+. |+.|++
T Consensus 117 ~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS-~srD~t 195 (430)
T KOG0640|consen 117 AAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILIS-GSRDNT 195 (430)
T ss_pred eeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEe-ccCCCe
Confidence 347999999999999999999876430 11 111223222 3345667777888877766655 778999
Q ss_pred EEEEEcCCCcEEEEee--cCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCcee
Q 040361 158 FQVIALNDGRVVQSIR--QHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFH 235 (413)
Q Consensus 158 i~i~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (413)
|+++|+......+.++ ....+|.++.|+|.|.+|+.|....++++||+.+.++... ..
T Consensus 196 vKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvs--------------------an 255 (430)
T KOG0640|consen 196 VKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVS--------------------AN 255 (430)
T ss_pred EEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeee--------------------cC
Confidence 9999997543332222 2457899999999999999999999999999998773211 11
Q ss_pred eeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeC-CCCCceeeEEEccCCcEEEEECCCCeEEEEEeC
Q 040361 236 ILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCH-PSGSALSKLAASRHGRIVLYGDDDLSLHLFSIN 314 (413)
Q Consensus 236 ~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~ 314 (413)
.-.+|.+.|+++.+++.+++.++|+.||.|++||--+++++.++.. |.+..|.+..|..+++++++.+.|..+++|.+.
T Consensus 256 Pd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~ 335 (430)
T KOG0640|consen 256 PDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEIS 335 (430)
T ss_pred cccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeec
Confidence 2357999999999999999999999999999999999999999864 445789999999999999999999999999998
Q ss_pred -Cceeeeeec------CCceeEEEecCCCCEEEEeCC-CCeEEEEECCCCceEEEec-CCCCcEEEEEEccCC-eEEEEc
Q 040361 315 -GKHLASSES------NGRLNCLELSACGQFLVCGGD-QGQIVVRSMNSLEVVRRYS-GVGKIITSLAVTPEE-CFLAGT 384 (413)
Q Consensus 315 -~~~~~~~~~------~~~i~~~~~s~~~~~l~~~~~-dg~i~v~d~~~~~~~~~~~-~~~~~v~~~~~~~~~-~~l~~~ 384 (413)
++.+..... ...-+...|+....|++.-++ .+.+.-||.++...+..+. +|.+.+..+.-+|.+ -|++|+
T Consensus 336 t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcs 415 (430)
T KOG0640|consen 336 TGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCS 415 (430)
T ss_pred CCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeec
Confidence 555544321 122345668878888877654 5689999999987665554 799999999999995 588999
Q ss_pred CCCeEEEEEec
Q 040361 385 KDGCLLVYSIE 395 (413)
Q Consensus 385 ~dg~i~vw~~~ 395 (413)
.|-.+++|--+
T Consensus 416 dD~raRFWyrr 426 (430)
T KOG0640|consen 416 DDFRARFWYRR 426 (430)
T ss_pred ccceeeeeeec
Confidence 99999999643
No 77
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.97 E-value=3.5e-29 Score=220.05 Aligned_cols=263 Identities=20% Similarity=0.278 Sum_probs=215.5
Q ss_pred CceeeecCCCCccccCCCcCCCcccCCCCcccce-ecceeEE-EEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecC
Q 040361 98 GNFTFSGSQDPFFGVGADILSPRNVGSPLAESFE-LGSQCFT-TMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQH 175 (413)
Q Consensus 98 ~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h 175 (413)
+-.++++++|+++++|. ++.-.......+. +.+.+.. ++|.+.++-.++.|+.|..+.+|...+..++..+.+|
T Consensus 25 ~~~i~s~sRd~t~~vw~----~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH 100 (745)
T KOG0301|consen 25 GVCIISGSRDGTVKVWA----KKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGH 100 (745)
T ss_pred CeEEeecCCCCceeeee----ccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhcc
Confidence 34688999999999963 3221111111222 2333333 5666544444555778999999999999999999999
Q ss_pred CCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCE
Q 040361 176 RDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDI 255 (413)
Q Consensus 176 ~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~ 255 (413)
...|+|++...++. +++||.|.++++|.... +...+.+|...|++++.-|++ .
T Consensus 101 ~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~-------------------------l~~~l~gH~asVWAv~~l~e~-~ 153 (745)
T KOG0301|consen 101 KSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE-------------------------LVYSLQGHTASVWAVASLPEN-T 153 (745)
T ss_pred ccceeeeecCCcCc-eEecccccceEEecchh-------------------------hhcccCCcchheeeeeecCCC-c
Confidence 99999999887776 99999999999998754 345589999999999999987 8
Q ss_pred EEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCceeee-eecCCceeEEEecC
Q 040361 256 VISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKHLAS-SESNGRLNCLELSA 334 (413)
Q Consensus 256 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~i~~~~~s~ 334 (413)
++||+.|.+|++|.- ++.++++.+| ...|+.+++-+++ .+++++.||.|++|++.+..+.. .+|..-+.+++..+
T Consensus 154 ~vTgsaDKtIklWk~--~~~l~tf~gH-tD~VRgL~vl~~~-~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~ 229 (745)
T KOG0301|consen 154 YVTGSADKTIKLWKG--GTLLKTFSGH-TDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMAL 229 (745)
T ss_pred EEeccCcceeeeccC--Cchhhhhccc-hhheeeeEEecCC-CeEeecCCceEEEEeccCceeeeeeccceEEEEEEecC
Confidence 999999999999985 7888889886 5689999999864 47889999999999998777665 67999999999888
Q ss_pred CCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEccCCeEEEEcCCCeEEEEEecCC
Q 040361 335 CGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFLAGTKDGCLLVYSIENR 397 (413)
Q Consensus 335 ~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~dg~i~vw~~~~~ 397 (413)
++..++++++|+++++|+.. ++.+.+.-+...|+++.+-++|.+++|+.||.|+||.....
T Consensus 230 ~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 230 SDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred CCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEeccc
Confidence 99999999999999999976 77777876667899999999999999999999999998754
No 78
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.7e-29 Score=225.97 Aligned_cols=232 Identities=24% Similarity=0.320 Sum_probs=188.8
Q ss_pred EEEEee-cCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccc---------------------------c------
Q 040361 168 VVQSIR-QHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPE---------------------------K------ 213 (413)
Q Consensus 168 ~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~---------------------------~------ 213 (413)
..+.+. .|.+.|.++.|++||+|||+|+.|+.|+||.+....... +
T Consensus 258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence 345566 799999999999999999999999999999987611000 0
Q ss_pred ----ccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceee
Q 040361 214 ----RVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSK 289 (413)
Q Consensus 214 ----~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~ 289 (413)
.........+.....+.++|+..+.||.+.|..+.|+.+ ++|++++.|.+|++|++....++..|.+ ...|++
T Consensus 338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~H--ndfVTc 414 (712)
T KOG0283|consen 338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFSH--NDFVTC 414 (712)
T ss_pred ccccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEec--CCeeEE
Confidence 000000122334445568899999999999999999876 5899999999999999999999999976 458999
Q ss_pred EEEcc-CCcEEEEECCCCeEEEEEeCCceeee-eecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecC--C
Q 040361 290 LAASR-HGRIVLYGDDDLSLHLFSINGKHLAS-SESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSG--V 365 (413)
Q Consensus 290 ~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~--~ 365 (413)
++|+| |.+++++|+-|+.+++|++...++.. .....-|++++|+|||++.++|+.+|.+++|+....+....+.- |
T Consensus 415 VaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~ 494 (712)
T KOG0283|consen 415 VAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLH 494 (712)
T ss_pred EEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeec
Confidence 99999 78999999999999999999777766 45668899999999999999999999999999998777654431 1
Q ss_pred ------CCcEEEEEEccC--CeEEEEcCCCeEEEEEecCCccccc
Q 040361 366 ------GKIITSLAVTPE--ECFLAGTKDGCLLVYSIENRRTSLP 402 (413)
Q Consensus 366 ------~~~v~~~~~~~~--~~~l~~~~dg~i~vw~~~~~~~~~~ 402 (413)
...|+++.|.|. .++|+.+.|..|+|+|..+.+...+
T Consensus 495 ~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~K 539 (712)
T KOG0283|consen 495 NKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHK 539 (712)
T ss_pred cCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhh
Confidence 237999999986 4689999999999999976555444
No 79
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=8e-29 Score=209.44 Aligned_cols=243 Identities=16% Similarity=0.229 Sum_probs=206.5
Q ss_pred ecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEecccccc
Q 040361 132 LGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAP 211 (413)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~ 211 (413)
.++.+.+++|+|...+=+++.+ .-.+.||+..+....+++....+.|.++.|..||++|+.|...|.|+++|+.+..
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~-- 101 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRV-- 101 (487)
T ss_pred ccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHH--
Confidence 3678899999997766555454 6789999998888888887788999999999999999999999999999965543
Q ss_pred ccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCC-EEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeE
Q 040361 212 EKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELD-IVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKL 290 (413)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~ 290 (413)
.+..+++|+.++..+.|+|+++ .+++|+.|+.+++||+.+......+..+ ...|.+.
T Consensus 102 ---------------------iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~h-tDYVR~g 159 (487)
T KOG0310|consen 102 ---------------------ILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGH-TDYVRCG 159 (487)
T ss_pred ---------------------HHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCC-cceeEee
Confidence 5778899999999999999654 7788999999999999998875566666 4689999
Q ss_pred EEccC-CcEEEEECCCCeEEEEEeC--CceeeeeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCC-ceEEEecCCC
Q 040361 291 AASRH-GRIVLYGDDDLSLHLFSIN--GKHLASSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSL-EVVRRYSGVG 366 (413)
Q Consensus 291 ~~~~~-~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~ 366 (413)
+++|. +.++++|+.||.|++||++ +..+....|..+|..+.+-|.|..+++++.+ .|+|||+.+| +.+..+..|.
T Consensus 160 ~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~qll~~~~~H~ 238 (487)
T KOG0310|consen 160 DISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGN-SVKVWDLTTGGQLLTSMFNHN 238 (487)
T ss_pred ccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCceehhhhhccc
Confidence 99995 5689999999999999998 4567778999999999999999999998765 8999999955 4555555699
Q ss_pred CcEEEEEEccCC-eEEEEcCCCeEEEEEecCCccc
Q 040361 367 KIITSLAVTPEE-CFLAGTKDGCLLVYSIENRRTS 400 (413)
Q Consensus 367 ~~v~~~~~~~~~-~~l~~~~dg~i~vw~~~~~~~~ 400 (413)
..|+|+.+..++ ++++++-|+.+++|++.+-+..
T Consensus 239 KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv 273 (487)
T KOG0310|consen 239 KTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVV 273 (487)
T ss_pred ceEEEEEeecCCceEeecccccceEEEEccceEEE
Confidence 999999999985 6889999999999997765543
No 80
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=7e-28 Score=219.96 Aligned_cols=246 Identities=10% Similarity=0.119 Sum_probs=181.5
Q ss_pred ecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCc--------EEEEeec
Q 040361 103 SGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGR--------VVQSIRQ 174 (413)
Q Consensus 103 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~--------~~~~~~~ 174 (413)
.|+.++.+++|.. .+. .++.....|...+.++.|+|++..++++|+.|+.|+|||+.++. .+..+.+
T Consensus 49 gGG~~gvI~L~~~----~r~-~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~g 123 (568)
T PTZ00420 49 GGGLIGAIRLENQ----MRK-PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKG 123 (568)
T ss_pred CCCceeEEEeeec----CCC-ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeec
Confidence 3667788888532 111 12223334567899999999855556667779999999997542 3456788
Q ss_pred CCCeEEEEEECCCCCE-EEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCC
Q 040361 175 HRDVVSCVAVTTDGSI-LATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVEL 253 (413)
Q Consensus 175 h~~~v~~~~~~~~~~~-l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~ 253 (413)
|...|.+++|+|++.. |++++.|++|++||+++++ ....+. |...|.+++|+++|
T Consensus 124 H~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~-----------------------~~~~i~-~~~~V~SlswspdG 179 (568)
T PTZ00420 124 HKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEK-----------------------RAFQIN-MPKKLSSLKWNIKG 179 (568)
T ss_pred CCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCc-----------------------EEEEEe-cCCcEEEEEECCCC
Confidence 9999999999998876 5789999999999998876 334443 56789999999999
Q ss_pred CEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCc----eeeEEEccCCcEEEEECCCC----eEEEEEeC--Cceeeeeec
Q 040361 254 DIVISGSKDGTCVFHTLREGRYVRSLCHPSGSA----LSKLAASRHGRIVLYGDDDL----SLHLFSIN--GKHLASSES 323 (413)
Q Consensus 254 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~~~d~----~i~i~d~~--~~~~~~~~~ 323 (413)
++|++++.|+.|++||+++++.+.++..|.+.. +....+++++.++++++.++ +|++||++ +..+....+
T Consensus 180 ~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~l 259 (568)
T PTZ00420 180 NLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSI 259 (568)
T ss_pred CEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEe
Confidence 999999999999999999999998888765421 12223458888888877664 79999998 344443333
Q ss_pred CC---ceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEec--CCCCcEEEEEEccCC
Q 040361 324 NG---RLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYS--GVGKIITSLAVTPEE 378 (413)
Q Consensus 324 ~~---~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~--~~~~~v~~~~~~~~~ 378 (413)
+. .+......++|.++++|..|+.|++|++..+. +..+. .+..++.+++|.|+.
T Consensus 260 d~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 260 DNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred cCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeecccccCCCccceEEcccc
Confidence 32 23333345568899999999999999998764 22232 256788999999973
No 81
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=7.5e-30 Score=211.23 Aligned_cols=247 Identities=19% Similarity=0.297 Sum_probs=211.3
Q ss_pred cceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCc--EEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccc
Q 040361 133 GSQCFTTMQTPSENFLITCGNWENSFQVIALNDGR--VVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARA 210 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~ 210 (413)
.+.+..+.|.++...|+..|. |..|++|+...++ .+.++.+..+.|+.+.|.++++++++++.|+.+++|++...+
T Consensus 175 ~gev~~v~~l~~sdtlatgg~-Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r- 252 (459)
T KOG0288|consen 175 EGEVHDVEFLRNSDTLATGGS-DRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLR- 252 (459)
T ss_pred ccccceeEEccCcchhhhcch-hhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchh-
Confidence 566777888888788877665 9999999987666 677888888999999999999999999999999999999887
Q ss_pred cccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeE
Q 040361 211 PEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKL 290 (413)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~ 290 (413)
...++.+|.+.|+++.|......+++|+.|.+|++||+.+..+.++.... +.+..+
T Consensus 253 ----------------------~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~--S~cnDI 308 (459)
T KOG0288|consen 253 ----------------------LRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPG--SQCNDI 308 (459)
T ss_pred ----------------------hhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccccc--ccccce
Confidence 67889999999999999887777999999999999999999888877653 356777
Q ss_pred EEccCCcEEEEECCCCeEEEEEeC-CceeeeeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCC----
Q 040361 291 AASRHGRIVLYGDDDLSLHLFSIN-GKHLASSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGV---- 365 (413)
Q Consensus 291 ~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~---- 365 (413)
+.+ ...+++|..|++|++||.+ +.........+.|+++..+++|..|++++.|..+.+.|+++.+....+...
T Consensus 309 ~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~ 386 (459)
T KOG0288|consen 309 VCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKC 386 (459)
T ss_pred Eec--ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecccccc
Confidence 776 5678899999999999988 555566777889999999999999999999999999999998888777532
Q ss_pred CCcEEEEEEccCCeEE-EEcCCCeEEEEEecCCcccccccccc
Q 040361 366 GKIITSLAVTPEECFL-AGTKDGCLLVYSIENRRTSLPRNVKS 407 (413)
Q Consensus 366 ~~~v~~~~~~~~~~~l-~~~~dg~i~vw~~~~~~~~~~~~~~~ 407 (413)
....+.+.|||++.|+ +|+.||.|+||++.+++....-...+
T Consensus 387 asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~ 429 (459)
T KOG0288|consen 387 ASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLST 429 (459)
T ss_pred ccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCC
Confidence 2348899999998877 59999999999999998765544333
No 82
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=1.1e-28 Score=206.94 Aligned_cols=252 Identities=16% Similarity=0.243 Sum_probs=203.6
Q ss_pred ccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCc----------EEEEeecCCCeEEEEEECCC-CCEEEEccC
Q 040361 128 ESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGR----------VVQSIRQHRDVVSCVAVTTD-GSILATGSY 196 (413)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~----------~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~ 196 (413)
..+.+.+.|..+.+.|.+..++++++..+.++|||..+.. +-..+.+|.+.-..++|++. .-.|++++.
T Consensus 119 ~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~ 198 (422)
T KOG0264|consen 119 QKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSD 198 (422)
T ss_pred EeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccC
Confidence 4466788999999999999999999989999999985421 12377899998899999984 457999999
Q ss_pred CCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEec-CCCEEEEeeCCCcEEEEEccC--C
Q 040361 197 DTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSV-ELDIVISGSKDGTCVFHTLRE--G 273 (413)
Q Consensus 197 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~-~~~~l~s~~~dg~i~vwd~~~--~ 273 (413)
|+.|++||+.......+.+ .+...+.+|...|..++|++ +..+|++++.|+.+.|||+|+ .
T Consensus 199 d~~i~lwdi~~~~~~~~~~----------------~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~ 262 (422)
T KOG0264|consen 199 DHTICLWDINAESKEDKVV----------------DPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTS 262 (422)
T ss_pred CCcEEEEeccccccCCccc----------------cceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCC
Confidence 9999999997765321111 25778899999999999998 456899999999999999995 4
Q ss_pred eEEEEEeCCCCCceeeEEEcc-CCcEEEEECCCCeEEEEEeC--Cceeee-eecCCceeEEEecCCC-CEEEEeCCCCeE
Q 040361 274 RYVRSLCHPSGSALSKLAASR-HGRIVLYGDDDLSLHLFSIN--GKHLAS-SESNGRLNCLELSACG-QFLVCGGDQGQI 348 (413)
Q Consensus 274 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~--~~~~~~-~~~~~~i~~~~~s~~~-~~l~~~~~dg~i 348 (413)
+.......+ ...+.+++|+| ++.+||+|+.|++|.+||++ ...+.. ..|...|.++.|+|.. ..|++++.|+.+
T Consensus 263 ~~~~~~~ah-~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl 341 (422)
T KOG0264|consen 263 KPSHSVKAH-SAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRL 341 (422)
T ss_pred CCccccccc-CCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcE
Confidence 444444444 56899999999 56788899999999999998 333333 5789999999999985 688899999999
Q ss_pred EEEECCCC--------------ceEEEecCCCCcEEEEEEccCC-e-EEEEcCCCeEEEEEecC
Q 040361 349 VVRSMNSL--------------EVVRRYSGVGKIITSLAVTPEE-C-FLAGTKDGCLLVYSIEN 396 (413)
Q Consensus 349 ~v~d~~~~--------------~~~~~~~~~~~~v~~~~~~~~~-~-~l~~~~dg~i~vw~~~~ 396 (413)
.|||+..- +++..-.||...|..+.|+|+. . +++.+.|+.+.||++..
T Consensus 342 ~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 342 NVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred EEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 99998642 2334556899999999999995 3 44589999999999874
No 83
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=7.3e-27 Score=178.88 Aligned_cols=279 Identities=21% Similarity=0.319 Sum_probs=212.2
Q ss_pred cCCCCCCceeeecCCCCccccCCCc--CCCcc-------cCCC-CcccceecceeEEEEecCCCCEEEEeecCCCeEEEE
Q 040361 92 TQLQSGGNFTFSGSQDPFFGVGADI--LSPRN-------VGSP-LAESFELGSQCFTTMQTPSENFLITCGNWENSFQVI 161 (413)
Q Consensus 92 ~~~s~~~~~l~~~~~d~~~~~~~~~--~~~~~-------~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~ 161 (413)
.+|.|.|.+-+.|+...++++-... .+++. .... ......|.+.+.+.+|+|+|+.++. |++|..|++.
T Consensus 38 v~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliat-gsndk~ik~l 116 (350)
T KOG0641|consen 38 VAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIAT-GSNDKTIKVL 116 (350)
T ss_pred EEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEe-cCCCceEEEE
Confidence 4567777777777777776654311 11100 0011 1223345678899999999986654 8889999997
Q ss_pred EcCCCcE-----EEEeecCCCeEEEEEECCC----CCEEEEccC-CCcEEEEEeccccccccccccceeecCCCceeeec
Q 040361 162 ALNDGRV-----VQSIRQHRDVVSCVAVTTD----GSILATGSY-DTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVE 231 (413)
Q Consensus 162 ~~~~~~~-----~~~~~~h~~~v~~~~~~~~----~~~l~s~s~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (413)
-.+...+ --++..|.+.|..++|-.+ +..|++++. |..|++-|..+++
T Consensus 117 ~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~---------------------- 174 (350)
T KOG0641|consen 117 PFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ---------------------- 174 (350)
T ss_pred ecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC----------------------
Confidence 6543222 2356679999999999653 567777664 6777777777776
Q ss_pred CceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCC------CCCceeeEEEccCCcEEEEECCC
Q 040361 232 TPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHP------SGSALSKLAASRHGRIVLYGDDD 305 (413)
Q Consensus 232 ~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~d 305 (413)
..+.+.+|.+-|.++ ++-++-++++|++|.+|++||++-..++.++... ..+.|.++++.|.|+++++|..|
T Consensus 175 -~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~d 252 (350)
T KOG0641|consen 175 -GFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHAD 252 (350)
T ss_pred -cceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCC
Confidence 788899999999877 4557789999999999999999988888877421 12578999999999999999999
Q ss_pred CeEEEEEeCCceeee--eecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCC----ceEEEecCCCCcEEEEEEccCC-
Q 040361 306 LSLHLFSINGKHLAS--SESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSL----EVVRRYSGVGKIITSLAVTPEE- 378 (413)
Q Consensus 306 ~~i~i~d~~~~~~~~--~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~----~~~~~~~~~~~~v~~~~~~~~~- 378 (413)
....+||+++..... ..|...|.|+.|+|.-.|+++++.|..|++-|++.. -.+.....|.+.+..+.|+|..
T Consensus 253 ssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~ 332 (350)
T KOG0641|consen 253 SSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDF 332 (350)
T ss_pred CceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccc
Confidence 999999999655543 468889999999999999999999999999998731 1223344688899999999985
Q ss_pred eEEEEcCCCeEEEEEec
Q 040361 379 CFLAGTKDGCLLVYSIE 395 (413)
Q Consensus 379 ~~l~~~~dg~i~vw~~~ 395 (413)
.|++.+.|.++.+|-+.
T Consensus 333 sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 333 SFISSSADKTATLWALN 349 (350)
T ss_pred eeeeccCcceEEEeccC
Confidence 58889999999999764
No 84
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=1.1e-27 Score=212.46 Aligned_cols=243 Identities=14% Similarity=0.202 Sum_probs=208.4
Q ss_pred ceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEecccc
Q 040361 130 FELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRAR 209 (413)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~ 209 (413)
.+|...+.+++++.+...++. |. .+.+++|+..+.++++++.. +.+.+..|.|.++++++|...|.+.+||+....
T Consensus 370 ~GHR~dVRsl~vS~d~~~~~S-ga-~~SikiWn~~t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~ 445 (888)
T KOG0306|consen 370 GGHRSDVRSLCVSSDSILLAS-GA-GESIKIWNRDTLKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLASAS 445 (888)
T ss_pred ccchhheeEEEeecCceeeee-cC-CCcEEEEEccCcceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeehhh
Confidence 345677888888776655554 54 78999999999999999974 488999999999999999999999999998876
Q ss_pred ccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccC-----CeE--E------
Q 040361 210 APEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLRE-----GRY--V------ 276 (413)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~-----~~~--~------ 276 (413)
.+.....|++.|++++.+||+..+++|+.|.+|++||..- +.. .
T Consensus 446 -----------------------l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~ 502 (888)
T KOG0306|consen 446 -----------------------LVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHT 502 (888)
T ss_pred -----------------------hhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccc
Confidence 5677789999999999999999999999999999999741 111 1
Q ss_pred EEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCcee--eeeecCCceeEEEecCCCCEEEEeCCCCeEEEEECC
Q 040361 277 RSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKHL--ASSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMN 354 (413)
Q Consensus 277 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~ 354 (413)
++++. ...|.++.+|||+++++++--|.++++|-++.-.. ...+|.-||.|+.+|||++++++|+.|.+|++|-+.
T Consensus 503 rtLel--~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLd 580 (888)
T KOG0306|consen 503 RTLEL--EDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLD 580 (888)
T ss_pred eEEec--cccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccc
Confidence 22333 34799999999999999999999999999985443 347899999999999999999999999999999999
Q ss_pred CCceEEEecCCCCcEEEEEEccCCe-EEEEcCCCeEEEEEecCCcccc
Q 040361 355 SLEVVRRYSGVGKIITSLAVTPEEC-FLAGTKDGCLLVYSIENRRTSL 401 (413)
Q Consensus 355 ~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~dg~i~vw~~~~~~~~~ 401 (413)
-|.+-+.+-+|.+.|.++.|-|+.. |++++.|+.|+-||-++-+...
T Consensus 581 FGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq 628 (888)
T KOG0306|consen 581 FGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQ 628 (888)
T ss_pred cchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhhe
Confidence 9999999999999999999999864 6689999999999987755443
No 85
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=4.8e-28 Score=189.03 Aligned_cols=245 Identities=16% Similarity=0.224 Sum_probs=208.3
Q ss_pred ceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEE--eecCCCeEEEEEECC-CCCEEEEccCCCcEEEEEec
Q 040361 130 FELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQS--IRQHRDVVSCVAVTT-DGSILATGSYDTTVMVWEVI 206 (413)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~--~~~h~~~v~~~~~~~-~~~~l~s~s~dg~i~iw~~~ 206 (413)
..+...+.+++|..+|..|+. |+.|+++.+|+++..+.... .++|.+.|-.++|+| ....|++++.|.+|++||++
T Consensus 17 ~~~~~~v~Sv~wn~~g~~las-gs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r 95 (313)
T KOG1407|consen 17 QGHVQKVHSVAWNCDGTKLAS-GSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIR 95 (313)
T ss_pred hhhhhcceEEEEcccCceeee-cccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEec
Confidence 345677899999999999887 55599999999987765543 467999999999988 57789999999999999999
Q ss_pred cccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCc
Q 040361 207 RARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSA 286 (413)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 286 (413)
.++ +........+.+ -+.|+|++++++.++.|..|...|.++.+.....+.. ..
T Consensus 96 ~~k-----------------------~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~--~e 149 (313)
T KOG1407|consen 96 SGK-----------------------CTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFK--FE 149 (313)
T ss_pred cCc-----------------------EEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhccc--ce
Confidence 988 555555555554 4679999999999999999999999999888777654 36
Q ss_pred eeeEEEccCCcEEEEECCCCeEEEEEeCC-ceeee-eecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecC
Q 040361 287 LSKLAASRHGRIVLYGDDDLSLHLFSING-KHLAS-SESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSG 364 (413)
Q Consensus 287 v~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~ 364 (413)
+..++|+.++.+++.....|+|.|..... +.+.. ..|.....|+.|+|+|+|+|+|+.|-.+.+||+...-+++.+..
T Consensus 150 ~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isR 229 (313)
T KOG1407|consen 150 VNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISR 229 (313)
T ss_pred eeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeecc
Confidence 78899998888888888889999998873 33333 46888999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEEccCCeEEE-EcCCCeEEEEEecCCcccc
Q 040361 365 VGKIITSLAVTPEECFLA-GTKDGCLLVYSIENRRTSL 401 (413)
Q Consensus 365 ~~~~v~~~~~~~~~~~l~-~~~dg~i~vw~~~~~~~~~ 401 (413)
+.-+|..+.|+.||++|+ +++|..|-|=++++|....
T Consensus 230 ldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~ 267 (313)
T KOG1407|consen 230 LDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVW 267 (313)
T ss_pred ccCceEEEEeccCcceeeccCccceEEeEecccCCeEE
Confidence 999999999999999886 9999999888888876553
No 86
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=9.3e-28 Score=200.10 Aligned_cols=270 Identities=16% Similarity=0.187 Sum_probs=219.6
Q ss_pred CCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeec
Q 040361 95 QSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQ 174 (413)
Q Consensus 95 s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~ 174 (413)
.|..+.+.+|+.|....+++... ...+....++...|..+.++++....+. ++.|..|+||.............
T Consensus 228 ~~s~~~ilTGG~d~~av~~d~~s-----~q~l~~~~Gh~kki~~v~~~~~~~~v~~-aSad~~i~vws~~~~s~~~~~~~ 301 (506)
T KOG0289|consen 228 IPSSSKILTGGEDKTAVLFDKPS-----NQILATLKGHTKKITSVKFHKDLDTVIT-ASADEIIRVWSVPLSSEPTSSRP 301 (506)
T ss_pred cCCCCcceecCCCCceEEEecch-----hhhhhhccCcceEEEEEEeccchhheee-cCCcceEEeeccccccCcccccc
Confidence 44467889999998877753221 1233334455677888888888776666 55599999999988888888889
Q ss_pred CCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeec--CCCCeEEEEEecC
Q 040361 175 HRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCG--HDDIITCLYVSVE 252 (413)
Q Consensus 175 h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~i~~~~~~~~ 252 (413)
|..+|+.+..+|.|.||++++.||+....|++++. .+..... ..-.+++.+|+||
T Consensus 302 h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~-----------------------~lt~vs~~~s~v~~ts~~fHpD 358 (506)
T KOG0289|consen 302 HEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGS-----------------------QLTVVSDETSDVEYTSAAFHPD 358 (506)
T ss_pred ccccceeeeeccCCcEEEEecCCceEEEEEccCCc-----------------------EEEEEeeccccceeEEeeEcCC
Confidence 99999999999999999999999999999999887 2322222 2345899999999
Q ss_pred CCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCC-ceeeee--ecCCceeE
Q 040361 253 LDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSING-KHLASS--ESNGRLNC 329 (413)
Q Consensus 253 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~--~~~~~i~~ 329 (413)
|.+|.+|..||.+++||+.++..+..|..| ..+|..++|+.+|-++++++.|+.|++||++. +.+... .....+.+
T Consensus 359 gLifgtgt~d~~vkiwdlks~~~~a~Fpgh-t~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s 437 (506)
T KOG0289|consen 359 GLIFGTGTPDGVVKIWDLKSQTNVAKFPGH-TGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNS 437 (506)
T ss_pred ceEEeccCCCceEEEEEcCCccccccCCCC-CCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeecccccccee
Confidence 999999999999999999999988889886 56999999999999999999999999999983 333333 33346999
Q ss_pred EEecCCCCEEEEeCCCCeEEEEECC--CCceEEEecCCCCcEEEEEEccCCeEEE-EcCCCeEEEEEe
Q 040361 330 LELSACGQFLVCGGDQGQIVVRSMN--SLEVVRRYSGVGKIITSLAVTPEECFLA-GTKDGCLLVYSI 394 (413)
Q Consensus 330 ~~~s~~~~~l~~~~~dg~i~v~d~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~dg~i~vw~~ 394 (413)
+.|.+.|.+|+.++.+=.|++++-. ++.++..+..|.+..+.+.|....++++ ++.|..++++.+
T Consensus 438 ~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 438 LSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred EEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 9999999999999887666666633 5677888888998999999998887775 999999888865
No 87
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=7.2e-29 Score=198.33 Aligned_cols=226 Identities=22% Similarity=0.321 Sum_probs=181.6
Q ss_pred EEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEE
Q 040361 170 QSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYV 249 (413)
Q Consensus 170 ~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~ 249 (413)
..+..|..++.+.+|++||.+++||+.|.+|+|.|++..-... ...++..+.+... ...++++..|.++|+++.|
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks-~~~em~~~~~qa~----hPvIRTlYDH~devn~l~F 180 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKS-KPKEMISGDTQAR----HPVIRTLYDHVDEVNDLDF 180 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhc-chhhhccCCcccC----CceEeehhhccCcccceee
Confidence 4456799999999999999999999999999999997432211 1111111111111 1147889999999999999
Q ss_pred ecCCCEEEEeeCCCcEEEEEccCCeEEEEEeC-CCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCceeee-----eec
Q 040361 250 SVELDIVISGSKDGTCVFHTLREGRYVRSLCH-PSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKHLAS-----SES 323 (413)
Q Consensus 250 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-----~~~ 323 (413)
+|...+|++|+.|++|+++|.......+.++. ....+|.++.|+|.|.++++|.....+++||+++.+... ..|
T Consensus 181 HPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qh 260 (430)
T KOG0640|consen 181 HPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQH 260 (430)
T ss_pred cchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccc
Confidence 99999999999999999999975443332221 113479999999999999999999999999999654432 357
Q ss_pred CCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEec-CCC-CcEEEEEEccCCeEE-EEcCCCeEEEEEecCCccc
Q 040361 324 NGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYS-GVG-KIITSLAVTPEECFL-AGTKDGCLLVYSIENRRTS 400 (413)
Q Consensus 324 ~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~-~~v~~~~~~~~~~~l-~~~~dg~i~vw~~~~~~~~ 400 (413)
.+.|+++.+++.|++.++|+.||.|++||--+++++.++. .|. ..|.+..|+.+|+|+ +.+.|..+++|++.+++..
T Consensus 261 t~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l 340 (430)
T KOG0640|consen 261 TGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRML 340 (430)
T ss_pred ccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceE
Confidence 7899999999999999999999999999999999998886 454 469999999999876 6899999999999998765
No 88
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=3.4e-28 Score=204.53 Aligned_cols=251 Identities=21% Similarity=0.339 Sum_probs=203.0
Q ss_pred ccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEecc
Q 040361 128 ESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIR 207 (413)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~ 207 (413)
+.+...+.+.++..+|.|.++++ |...|.|++|.+.+|.++..+.+|-..|+|+.|+.||.+|+|||.||.|.+|.+..
T Consensus 76 q~~v~Pg~v~al~s~n~G~~l~a-g~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~ 154 (476)
T KOG0646|consen 76 QYIVLPGPVHALASSNLGYFLLA-GTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTD 154 (476)
T ss_pred hhcccccceeeeecCCCceEEEe-ecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEe
Confidence 44455777888888888888776 54589999999999999999999999999999999999999999999999999865
Q ss_pred ccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecC--CCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCC
Q 040361 208 ARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVE--LDIVISGSKDGTCVFHTLREGRYVRSLCHPSGS 285 (413)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 285 (413)
--...... ...+...+..|.-+|+.+...+. ..+++|++.|.++++||+..+..+.++..+.
T Consensus 155 lv~a~~~~--------------~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~-- 218 (476)
T KOG0646|consen 155 LVSADNDH--------------SVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPS-- 218 (476)
T ss_pred ecccccCC--------------CccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCC--
Confidence 43211110 12378899999999999998765 3589999999999999999999999988764
Q ss_pred ceeeEEEccCCcEEEEECCCCeEEEEEeCCce---e---------------eeeecCC--ceeEEEecCCCCEEEEeCCC
Q 040361 286 ALSKLAASRHGRIVLYGDDDLSLHLFSINGKH---L---------------ASSESNG--RLNCLELSACGQFLVCGGDQ 345 (413)
Q Consensus 286 ~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~---~---------------~~~~~~~--~i~~~~~s~~~~~l~~~~~d 345 (413)
.+.+++++|.+..+++|+.+|.|.+.++.+.. . ...+|.+ .|+|++++-||..|++|+.|
T Consensus 219 si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~d 298 (476)
T KOG0646|consen 219 SIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDED 298 (476)
T ss_pred cceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCC
Confidence 79999999999999999999999998874211 1 1124555 89999999999999999999
Q ss_pred CeEEEEECCCCceEEEecCCCCcEEEEEEccCC--eEEEEcCCCeEEEEEec
Q 040361 346 GQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEE--CFLAGTKDGCLLVYSIE 395 (413)
Q Consensus 346 g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~dg~i~vw~~~ 395 (413)
|.|+|||+.+.++++++....++|+.+.+.|-. .++.-.....+..|++.
T Consensus 299 g~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~lk 350 (476)
T KOG0646|consen 299 GKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERGIILFEHKQPSLPNPHLK 350 (476)
T ss_pred CCEEEEecchHHHHHHHhhhccccceeEeeccccceecccccCccCCchHhh
Confidence 999999999999999887678899999986642 23332333334444443
No 89
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=9.3e-29 Score=215.89 Aligned_cols=233 Identities=21% Similarity=0.357 Sum_probs=198.4
Q ss_pred CCCCEEEEeecCCCeEEEEEcCCCc------EEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccc
Q 040361 143 PSENFLITCGNWENSFQVIALNDGR------VVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVR 216 (413)
Q Consensus 143 ~~~~~l~~~g~~d~~i~i~~~~~~~------~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~ 216 (413)
|.+++|+. |+.||.|++|+..... .+..++.|.+.|+.+....+++.|+++|.|-+|++|+......
T Consensus 35 ~~~ryLfT-gGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~------ 107 (735)
T KOG0308|consen 35 PNGRYLFT-GGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNT------ 107 (735)
T ss_pred CCCceEEe-cCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcc------
Confidence 34454554 6669999999985422 3677889999999999999999999999999999999876630
Q ss_pred cceeecCCCceeeecCceeeeecCCCCeEEEEE-ecCCCEEEEeeCCCcEEEEEccCC--eEEEEE--------eCCCCC
Q 040361 217 NMQIEAPRKDYVIVETPFHILCGHDDIITCLYV-SVELDIVISGSKDGTCVFHTLREG--RYVRSL--------CHPSGS 285 (413)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~-~~~~~~l~s~~~dg~i~vwd~~~~--~~~~~~--------~~~~~~ 285 (413)
-+..++..|.+.|.|+++ -++...+|+|+-|+.|++||+.++ +.+.++ ......
T Consensus 108 ---------------~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~ 172 (735)
T KOG0308|consen 108 ---------------FCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKD 172 (735)
T ss_pred ---------------hhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCcc
Confidence 157788899999999999 778889999999999999999987 333332 212346
Q ss_pred ceeeEEEccCCcEEEEECCCCeEEEEEeCC--ceeeeeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEec
Q 040361 286 ALSKLAASRHGRIVLYGDDDLSLHLFSING--KHLASSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYS 363 (413)
Q Consensus 286 ~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~ 363 (413)
.|++++.++.|..+++|+.++.+++||.+. +.....+|...|.++..++||..+++++.||+|++||+...+++.++.
T Consensus 173 siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~ 252 (735)
T KOG0308|consen 173 SIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYI 252 (735)
T ss_pred ceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEE
Confidence 799999999999999999999999999983 333446899999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEEccC-CeEEEEcCCCeEEEEEecCC
Q 040361 364 GVGKIITSLAVTPE-ECFLAGTKDGCLLVYSIENR 397 (413)
Q Consensus 364 ~~~~~v~~~~~~~~-~~~l~~~~dg~i~vw~~~~~ 397 (413)
.|...|+++..+|+ ..+.+|+.||.|+.=|+.+.
T Consensus 253 vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 253 VHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred eccCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 99999999999998 56778999999999999885
No 90
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.1e-27 Score=201.19 Aligned_cols=236 Identities=20% Similarity=0.203 Sum_probs=192.3
Q ss_pred eecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccc
Q 040361 131 ELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARA 210 (413)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~ 210 (413)
.|...+++++.++++++++..|. |..|.||+.++.+.++.+.+|.+.|.+++|-.....|++++.|++|++|+++...
T Consensus 200 ~h~keil~~avS~Dgkylatgg~-d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s- 277 (479)
T KOG0299|consen 200 GHVKEILTLAVSSDGKYLATGGR-DRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLS- 277 (479)
T ss_pred cccceeEEEEEcCCCcEEEecCC-CceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhH-
Confidence 56788999999999999998555 9999999999999999999999999999999888899999999999999998876
Q ss_pred cccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeE
Q 040361 211 PEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKL 290 (413)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~ 290 (413)
.+.++.+|.+.|..+.....++.+-.|+.|+++++|++.... ...+..+ ...+.++
T Consensus 278 ----------------------~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees-qlifrg~-~~sidcv 333 (479)
T KOG0299|consen 278 ----------------------YVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES-QLIFRGG-EGSIDCV 333 (479)
T ss_pred ----------------------HHHHHhCCccceeeechhcccceEEeccccceeEEEeccccc-eeeeeCC-CCCeeeE
Confidence 678899999999999998888888888899999999994332 2223333 4567888
Q ss_pred EEccCCcEEEEECCCCeEEEEEeCCceeee-e-------------ecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCC
Q 040361 291 AASRHGRIVLYGDDDLSLHLFSINGKHLAS-S-------------ESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSL 356 (413)
Q Consensus 291 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~-------------~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~ 356 (413)
+|-. ...+++|+.+|.|.+|++..+.... . .++..|++++..|..+++++|+.+|.|++|-+..+
T Consensus 334 ~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 334 AFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred EEec-ccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 8764 4679999999999999997443322 1 11237899999999999999999999999998876
Q ss_pred ----ceEEEecCCCCcEEEEEEccCCe-EEE-EcCCCeEEEEEe
Q 040361 357 ----EVVRRYSGVGKIITSLAVTPEEC-FLA-GTKDGCLLVYSI 394 (413)
Q Consensus 357 ----~~~~~~~~~~~~v~~~~~~~~~~-~l~-~~~dg~i~vw~~ 394 (413)
+++..+. -.+-|++++|+++|+ +++ .+....+-=|-.
T Consensus 413 ~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~ 455 (479)
T KOG0299|consen 413 LRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWC 455 (479)
T ss_pred ccccceeeecc-cccEEEEEEEccCCCEEEEecccccccceeeE
Confidence 4455555 567899999999987 445 445555544543
No 91
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.5e-28 Score=214.60 Aligned_cols=287 Identities=18% Similarity=0.285 Sum_probs=224.9
Q ss_pred CCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecc-eeEEEEecCCCCEEEEeecCCCeEEEEEcCCC--cEEEE
Q 040361 95 QSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGS-QCFTTMQTPSENFLITCGNWENSFQVIALNDG--RVVQS 171 (413)
Q Consensus 95 s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~--~~~~~ 171 (413)
.|.+++|++||+||.+++|+..........+....+++|. -+..++...+++.++.+.+ |.+|++|+...+ -+..+
T Consensus 34 a~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~Ss-DtTVK~W~~~~~~~~c~st 112 (735)
T KOG0308|consen 34 APNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASS-DTTVKVWNAHKDNTFCMST 112 (735)
T ss_pred CCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecC-CceEEEeecccCcchhHhh
Confidence 4566789999999999998765554444444344444443 3445555667778887666 999999999876 57788
Q ss_pred eecCCCeEEEEEE-CCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeee-cCCCCeEEEEE
Q 040361 172 IRQHRDVVSCVAV-TTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILC-GHDDIITCLYV 249 (413)
Q Consensus 172 ~~~h~~~v~~~~~-~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~i~~~~~ 249 (413)
+..|.+.|.|+++ .++...+|+||-|+.|.+||+.++... .+..... .....+. ++...|++++.
T Consensus 113 ir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~--l~~s~n~-----------~t~~sl~sG~k~siYSLA~ 179 (735)
T KOG0308|consen 113 IRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTAT--LVASFNN-----------VTVNSLGSGPKDSIYSLAM 179 (735)
T ss_pred hhcccchheeeeecccCceeEEecCCCccEEEEEccCcchh--hhhhccc-----------cccccCCCCCccceeeeec
Confidence 8899999999999 778899999999999999999977420 0000000 0222333 89999999999
Q ss_pred ecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCce-eee-eecCCce
Q 040361 250 SVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKH-LAS-SESNGRL 327 (413)
Q Consensus 250 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~-~~~~~~i 327 (413)
++.+..+++|+..+.+++||.++++.+..+.+|. ..|..+..+++|..+++++.||+|++||+..+. +.. ..|...+
T Consensus 180 N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHT-dNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~V 258 (735)
T KOG0308|consen 180 NQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHT-DNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGV 258 (735)
T ss_pred CCcceEEEecCcccceEEeccccccceeeeeccc-cceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCce
Confidence 9999999999999999999999999999999774 579999999999999999999999999998544 333 4577789
Q ss_pred eEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEccC-CeEEEEcCCCeEEEEEecC
Q 040361 328 NCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPE-ECFLAGTKDGCLLVYSIEN 396 (413)
Q Consensus 328 ~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~dg~i~vw~~~~ 396 (413)
.++..+|+-.++++|+.||.|+.=|+++......+-....+|..+..+.+ ..+-+++.|+.|+-|...-
T Consensus 259 WaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~ 328 (735)
T KOG0308|consen 259 WALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEP 328 (735)
T ss_pred EEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCcc
Confidence 99999999999999999999999999985443333335667777777754 3445788889999998754
No 92
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=1.8e-27 Score=198.46 Aligned_cols=234 Identities=18% Similarity=0.266 Sum_probs=199.2
Q ss_pred eEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEecccccccccc
Q 040361 136 CFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRV 215 (413)
Q Consensus 136 ~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~ 215 (413)
+.++...|. ...+.+|..|..+.++|...++.+..++||...|+.+.|+|+...+++++.|..|++|......
T Consensus 222 i~ald~~~s-~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s------ 294 (506)
T KOG0289|consen 222 ITALDIIPS-SSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS------ 294 (506)
T ss_pred eeEEeecCC-CCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc------
Confidence 444444555 4556667779999999999999999999999999999999999999999999999999987665
Q ss_pred ccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCC-CCCceeeEEEcc
Q 040361 216 RNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHP-SGSALSKLAASR 294 (413)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~~v~~~~~~~ 294 (413)
.......|+++|+.+..+|.|.||++++.||+..+.|++++..+...... .+..+++.+|+|
T Consensus 295 -----------------~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp 357 (506)
T KOG0289|consen 295 -----------------EPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP 357 (506)
T ss_pred -----------------CccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC
Confidence 45567789999999999999999999999999999999999988776553 345789999999
Q ss_pred CCcEEEEECCCCeEEEEEeCCc-eeee-eecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCC-CCcEEE
Q 040361 295 HGRIVLYGDDDLSLHLFSINGK-HLAS-SESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGV-GKIITS 371 (413)
Q Consensus 295 ~~~~l~~~~~d~~i~i~d~~~~-~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-~~~v~~ 371 (413)
||.++.+|..|+.|++||+... .+.. -.|.++|..++|+.+|-||+++++|+.|++||++..+...++... ...+.+
T Consensus 358 DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s 437 (506)
T KOG0289|consen 358 DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNS 437 (506)
T ss_pred CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeecccccccee
Confidence 9999999999999999999843 3333 469999999999999999999999999999999998887777633 246999
Q ss_pred EEEccCCeEEE-EcCCCeEEEEE
Q 040361 372 LAVTPEECFLA-GTKDGCLLVYS 393 (413)
Q Consensus 372 ~~~~~~~~~l~-~~~dg~i~vw~ 393 (413)
+.|.+.|.++. ++.|=.|++++
T Consensus 438 ~~fD~SGt~L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 438 LSFDQSGTYLGIAGSDLQVYICK 460 (506)
T ss_pred EEEcCCCCeEEeecceeEEEEEe
Confidence 99999998885 65554455444
No 93
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1e-28 Score=201.36 Aligned_cols=261 Identities=14% Similarity=0.208 Sum_probs=199.1
Q ss_pred ceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEecccccccc
Q 040361 134 SQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEK 213 (413)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~ 213 (413)
..+.+++-.|..-..+++|+.||.|+|||+.+..+...++.|.+.|..+++.. ..+++++.|.+|+.|.++.......
T Consensus 67 dGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p~~ti 144 (433)
T KOG0268|consen 67 DGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPPLHTI 144 (433)
T ss_pred cccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCCcceee
Confidence 33444444555546677788899999999999999999999999999999976 6789999999999999765311000
Q ss_pred cc----------ccceeecCCCceeee-----cCceeeeecCCCCeEEEEEecCC-CEEEEeeCCCcEEEEEccCCeEEE
Q 040361 214 RV----------RNMQIEAPRKDYVIV-----ETPFHILCGHDDIITCLYVSVEL-DIVISGSKDGTCVFHTLREGRYVR 277 (413)
Q Consensus 214 ~~----------~~~~~~~~~~~~~~~-----~~~~~~~~~h~~~i~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~ 277 (413)
.. ........+++.+.+ ..|+..+.--...|.++.|+|-. ..|++|..|+.|.+||++++.++.
T Consensus 145 lg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~ 224 (433)
T KOG0268|consen 145 LGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLK 224 (433)
T ss_pred eccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccc
Confidence 00 000111122222222 23566666667788999999954 477788899999999999999988
Q ss_pred EEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCC--ceee-eeecCCceeEEEecCCCCEEEEeCCCCeEEEEECC
Q 040361 278 SLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSING--KHLA-SSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMN 354 (413)
Q Consensus 278 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~--~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~ 354 (413)
.+.... .-+.++|+|+.-.+++++.|..++.||++. ..+. ...|...|.++.|||.|+-+++|+.|.+|+||..+
T Consensus 225 KVi~~m--RTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~ 302 (433)
T KOG0268|consen 225 KVILTM--RTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVN 302 (433)
T ss_pred eeeeec--cccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecC
Confidence 776533 567899999888899999999999999983 2222 35688899999999999999999999999999998
Q ss_pred CCceEEEec-CCCCcEEEEEEccCCeEE-EEcCCCeEEEEEecCCc
Q 040361 355 SLEVVRRYS-GVGKIITSLAVTPEECFL-AGTKDGCLLVYSIENRR 398 (413)
Q Consensus 355 ~~~~~~~~~-~~~~~v~~~~~~~~~~~l-~~~~dg~i~vw~~~~~~ 398 (413)
.+.....+. .--..|.++.|+.|.+|+ +|++|++|++|.....+
T Consensus 303 ~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 303 HGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred CCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhh
Confidence 876554442 123469999999998766 69999999999986543
No 94
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=1e-27 Score=186.05 Aligned_cols=279 Identities=18% Similarity=0.220 Sum_probs=220.1
Q ss_pred cCCCccEEEEEecCCCCCCeEEEEeecCCcEEEEecCceEE--------EEEeeccCCCCCCceeeecCCCCccccCCCc
Q 040361 45 APGSINLTSIICSTRHQPSGIVYVGMLDSSIVLVNQGLTLS--------VKMWLTTQLQSGGNFTFSGSQDPFFGVGADI 116 (413)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~s~~~~~l~~~~~d~~~~~~~~~ 116 (413)
.-..++..-+..+...|.+-.+..++.|++-+|-+.....= -.+|. +.+..+....++++.|-+-++|+..
T Consensus 11 ~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~-~~l~~na~~aasaaadftakvw~a~ 89 (334)
T KOG0278|consen 11 HGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWS-ATLNKNATRAASAAADFTAKVWDAV 89 (334)
T ss_pred cCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceee-eecCchhhhhhhhcccchhhhhhhh
Confidence 33445555556666777777777778887777765433211 12453 3456666778899999999997532
Q ss_pred CCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCc-EEEEeecCCCeEEEEEECCCCCEEEEcc
Q 040361 117 LSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGR-VVQSIRQHRDVVSCVAVTTDGSILATGS 195 (413)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~l~s~s 195 (413)
. ......++|..-+.+++|+.|.++|+. |+.+..++|||++..+ +...+.+|.+.|..+-|....+.+++++
T Consensus 90 t------gdelhsf~hkhivk~~af~~ds~~llt-gg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSa 162 (334)
T KOG0278|consen 90 T------GDELHSFEHKHIVKAVAFSQDSNYLLT-GGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSA 162 (334)
T ss_pred h------hhhhhhhhhhheeeeEEecccchhhhc-cchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeec
Confidence 1 222335566667788888888888887 5559999999998654 5678889999999999999889999999
Q ss_pred CCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeE
Q 040361 196 YDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRY 275 (413)
Q Consensus 196 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 275 (413)
.|++|++||.+++. .++.+. ...+|+++.++++|+++.++ ..+.|+.||..+...
T Consensus 163 dd~tVRLWD~rTgt-----------------------~v~sL~-~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~ 217 (334)
T KOG0278|consen 163 DDKTVRLWDHRTGT-----------------------EVQSLE-FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGL 217 (334)
T ss_pred cCCceEEEEeccCc-----------------------EEEEEe-cCCCCcceeeccCCCEEEEe-cCceeEEeccccccc
Confidence 99999999999987 455554 56789999999999877665 467899999999999
Q ss_pred EEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeC-Cceeee--eecCCceeEEEecCCCCEEEEeCCCCeEEEEE
Q 040361 276 VRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSIN-GKHLAS--SESNGRLNCLELSACGQFLVCGGDQGQIVVRS 352 (413)
Q Consensus 276 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~--~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d 352 (413)
++.++.+. .|.+..++|+...+++|+.|..++.||.. +..+.. .+|.++|.|+.|+|+|...++|++||+|++|.
T Consensus 218 lKs~k~P~--nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 218 LKSYKMPC--NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQ 295 (334)
T ss_pred eeeccCcc--ccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEE
Confidence 99998875 68999999999999999999999999998 555544 47889999999999999999999999999999
Q ss_pred CCCCce
Q 040361 353 MNSLEV 358 (413)
Q Consensus 353 ~~~~~~ 358 (413)
+..++.
T Consensus 296 t~~~~~ 301 (334)
T KOG0278|consen 296 TTPGKT 301 (334)
T ss_pred ecCCCc
Confidence 876554
No 95
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=4.8e-27 Score=187.84 Aligned_cols=239 Identities=19% Similarity=0.285 Sum_probs=194.3
Q ss_pred cceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccc
Q 040361 133 GSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPE 212 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~ 212 (413)
...+.++.|+|..+.|++ +++||++++|+.........++ |..++.+++|.+ ...+++|+.||.|+.+|+.++.
T Consensus 13 ~d~IS~v~f~~~~~~LLv-ssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~--- 86 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLV-SSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGN--- 86 (323)
T ss_pred hhceeeEEEcCcCCcEEE-EeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCc---
Confidence 345778889988888887 5589999999998876666665 999999999976 5689999999999999999886
Q ss_pred cccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEE
Q 040361 213 KRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAA 292 (413)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~ 292 (413)
...+..|..+|.|+..++....+++|+.|++|++||.+.......+... ..|.++..
T Consensus 87 ---------------------~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~--kkVy~~~v 143 (323)
T KOG1036|consen 87 ---------------------EDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQG--KKVYCMDV 143 (323)
T ss_pred ---------------------ceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccC--ceEEEEec
Confidence 5667789999999999998889999999999999999886655555543 35665554
Q ss_pred ccCCcEEEEECCCCeEEEEEeCCceee----eeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCC----ceEEEecC
Q 040361 293 SRHGRIVLYGDDDLSLHLFSINGKHLA----SSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSL----EVVRRYSG 364 (413)
Q Consensus 293 ~~~~~~l~~~~~d~~i~i~d~~~~~~~----~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~----~~~~~~~~ 364 (413)
.++.|++|+.+..+.+||++..... ....+..+.|+++-|++.=.++++-||.|.+=.+... +.-..|+.
T Consensus 144 --~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkC 221 (323)
T KOG1036|consen 144 --SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKC 221 (323)
T ss_pred --cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEe
Confidence 5788999999999999999843222 2356678999999999888999999999988655544 22334555
Q ss_pred CC---------CcEEEEEEccC-CeEEEEcCCCeEEEEEecCCccccc
Q 040361 365 VG---------KIITSLAVTPE-ECFLAGTKDGCLLVYSIENRRTSLP 402 (413)
Q Consensus 365 ~~---------~~v~~~~~~~~-~~~l~~~~dg~i~vw~~~~~~~~~~ 402 (413)
|. -+|++|+|+|- +.|++|+.||.|.+||+.++|+...
T Consensus 222 Hr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q 269 (323)
T KOG1036|consen 222 HRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQ 269 (323)
T ss_pred eecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhh
Confidence 53 37999999998 6788899999999999999876644
No 96
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=2.2e-27 Score=199.37 Aligned_cols=248 Identities=21% Similarity=0.327 Sum_probs=209.5
Q ss_pred cccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEE----E-------------e-ecCCCeEEEEEECCCC
Q 040361 127 AESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQ----S-------------I-RQHRDVVSCVAVTTDG 188 (413)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~----~-------------~-~~h~~~v~~~~~~~~~ 188 (413)
.....|.-.+++++.+|++.+.+.++. +++|.=|++.+++... . - ++|...+.+++.++|+
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask-~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASK-DGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCC-CcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 344456778899999999999888554 9999999998876331 1 1 2688999999999999
Q ss_pred CEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEE
Q 040361 189 SILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFH 268 (413)
Q Consensus 189 ~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vw 268 (413)
++|++|+.|..|.||+.++.+ +++.+.+|.+.|.+++|-...+.+++++.|+.+++|
T Consensus 215 kylatgg~d~~v~Iw~~~t~e-----------------------hv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw 271 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLE-----------------------HVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVW 271 (479)
T ss_pred cEEEecCCCceEEEecCcccc-----------------------hhhcccccccceeeeeeecCccceeeeecCCceEEE
Confidence 999999999999999999988 788899999999999999888899999999999999
Q ss_pred EccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeC-CceeeeeecCCceeEEEecCCCCEEEEeCCCCe
Q 040361 269 TLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSIN-GKHLASSESNGRLNCLELSACGQFLVCGGDQGQ 347 (413)
Q Consensus 269 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~ 347 (413)
++.....+.++..|+ ..|..+....-++.+.+|+.|+++++|++. ..++....+.+.+.|++|- +...+++|+.+|.
T Consensus 272 ~~~~~s~vetlyGHq-d~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~I-n~~HfvsGSdnG~ 349 (479)
T KOG0299|consen 272 SIDQLSYVETLYGHQ-DGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFI-NDEHFVSGSDNGS 349 (479)
T ss_pred ehhHhHHHHHHhCCc-cceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEe-cccceeeccCCce
Confidence 999888888887774 578888888888888899999999999997 4455556778899999998 4567899999999
Q ss_pred EEEEECCCCceEEEec-CC-----------CCcEEEEEEccCCeEE-EEcCCCeEEEEEecCCccc
Q 040361 348 IVVRSMNSLEVVRRYS-GV-----------GKIITSLAVTPEECFL-AGTKDGCLLVYSIENRRTS 400 (413)
Q Consensus 348 i~v~d~~~~~~~~~~~-~~-----------~~~v~~~~~~~~~~~l-~~~~dg~i~vw~~~~~~~~ 400 (413)
|.+|++...+++.... .| ...|++++..|...++ +|+.+|+|++|.+.++-+.
T Consensus 350 IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~ 415 (479)
T KOG0299|consen 350 IALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRA 415 (479)
T ss_pred EEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccc
Confidence 9999999888876654 22 1278999999986666 5999999999999988443
No 97
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=2e-27 Score=216.31 Aligned_cols=226 Identities=21% Similarity=0.356 Sum_probs=197.8
Q ss_pred EEEeecCCCeEEEEEcCCCcEEEE-eecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCc
Q 040361 148 LITCGNWENSFQVIALNDGRVVQS-IRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKD 226 (413)
Q Consensus 148 l~~~g~~d~~i~i~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 226 (413)
.+.+|+.|+.|++|+..++..+.. +.+|.+.|.++++..-+..|++|+.|.++++||..++.
T Consensus 220 ~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~----------------- 282 (537)
T KOG0274|consen 220 FFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGE----------------- 282 (537)
T ss_pred eEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCc-----------------
Confidence 344477799999999999999988 99999999999998778899999999999999999988
Q ss_pred eeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCC
Q 040361 227 YVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDL 306 (413)
Q Consensus 227 ~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 306 (413)
+...+.+|.+.|.++...+ ..+++|+.|.+|++|++.++..+..+..+ ..+|+++..+ +.++++|+.|+
T Consensus 283 ------C~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~~l~l~~~h-~~~V~~v~~~--~~~lvsgs~d~ 351 (537)
T KOG0274|consen 283 ------CTHSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGACLNLLRGH-TGPVNCVQLD--EPLLVSGSYDG 351 (537)
T ss_pred ------EEEEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcceEEEeccc-cccEEEEEec--CCEEEEEecCc
Confidence 8999999999999988654 47888999999999999999999999874 6699999988 88999999999
Q ss_pred eEEEEEeC-Cceeee-eecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCC-ceEEEecCCCCcEEEEEEccCCeEEEE
Q 040361 307 SLHLFSIN-GKHLAS-SESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSL-EVVRRYSGVGKIITSLAVTPEECFLAG 383 (413)
Q Consensus 307 ~i~i~d~~-~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~ 383 (413)
+|++||+. ++.+.. .+|.+.|.++.+.+. ..+++|+.|+.|++||+.+. +++..+.+|..-+.++.+. +..++++
T Consensus 352 ~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~-~~~Lvs~ 429 (537)
T KOG0274|consen 352 TVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLR-DNFLVSS 429 (537)
T ss_pred eEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccc-cceeEec
Confidence 99999998 455544 469999999988655 89999999999999999999 9999999999988777665 3456679
Q ss_pred cCCCeEEEEEecCCcccccc
Q 040361 384 TKDGCLLVYSIENRRTSLPR 403 (413)
Q Consensus 384 ~~dg~i~vw~~~~~~~~~~~ 403 (413)
+.|+.|++||..+++.....
T Consensus 430 ~aD~~Ik~WD~~~~~~~~~~ 449 (537)
T KOG0274|consen 430 SADGTIKLWDAEEGECLRTL 449 (537)
T ss_pred cccccEEEeecccCceeeee
Confidence 99999999999988765443
No 98
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=6.3e-27 Score=216.22 Aligned_cols=262 Identities=20% Similarity=0.268 Sum_probs=208.1
Q ss_pred ceeEEEEecCCCCEEEEeec-CCCeEEEEEcCC------------CcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcE
Q 040361 134 SQCFTTMQTPSENFLITCGN-WENSFQVIALND------------GRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTV 200 (413)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~g~-~d~~i~i~~~~~------------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i 200 (413)
..++++..+|++..+++.|. .|+.++||+.+. .+.+.....|.+.|+|+.|+|||++||+||+|+.|
T Consensus 14 ~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v 93 (942)
T KOG0973|consen 14 KSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLV 93 (942)
T ss_pred eeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceE
Confidence 44788999999999988661 488888998642 23456667899999999999999999999999999
Q ss_pred EEEEeccccccccccccceeec-CCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEE
Q 040361 201 MVWEVIRARAPEKRVRNMQIEA-PRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSL 279 (413)
Q Consensus 201 ~iw~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 279 (413)
.+|+..... ... .++. .....+...+.+..+.+|.+.|..++|+|++.++++++.|++|.+||.++.+.+..+
T Consensus 94 ~iW~~~~~~-~~~-----~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl 167 (942)
T KOG0973|consen 94 MIWERAEIG-SGT-----VFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVL 167 (942)
T ss_pred EEeeecccC-Ccc-----cccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeee
Confidence 999987410 000 0000 001112233467889999999999999999999999999999999999999999999
Q ss_pred eCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCceeee--------eecCCceeEEEecCCCCEEEEeC----CCCe
Q 040361 280 CHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKHLAS--------SESNGRLNCLELSACGQFLVCGG----DQGQ 347 (413)
Q Consensus 280 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~--------~~~~~~i~~~~~s~~~~~l~~~~----~dg~ 347 (413)
..|. ..|-.+.|+|-|+++++-+.|++|++|.+..-.+.. .........+.|||||++|++.. ....
T Consensus 168 ~~H~-s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~ 246 (942)
T KOG0973|consen 168 RGHQ-SLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKST 246 (942)
T ss_pred eccc-ccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcce
Confidence 8875 589999999999999999999999999976422221 12334578899999999999863 2347
Q ss_pred EEEEECCCCceEEEecCCCCcEEEEEEccC------C-----------eEEE-EcCCCeEEEEEecCCccccc
Q 040361 348 IVVRSMNSLEVVRRYSGVGKIITSLAVTPE------E-----------CFLA-GTKDGCLLVYSIENRRTSLP 402 (413)
Q Consensus 348 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~------~-----------~~l~-~~~dg~i~vw~~~~~~~~~~ 402 (413)
+.|.+..+.+.-..+-+|.+++.++.|+|. . .++| |+.|++|.||.....++.+-
T Consensus 247 ~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~v 319 (942)
T KOG0973|consen 247 IAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFV 319 (942)
T ss_pred eEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhh
Confidence 889999888888899999999999999982 1 1344 99999999999977766543
No 99
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=5.6e-27 Score=186.83 Aligned_cols=260 Identities=13% Similarity=0.128 Sum_probs=201.2
Q ss_pred cCCCC-CCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEE
Q 040361 92 TQLQS-GGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQ 170 (413)
Q Consensus 92 ~~~s~-~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~ 170 (413)
..||| ...+++.++.|+++|+|..+-...... .....+.+.+++++|+.+|..++++++ |+.+++||+.+++ ..
T Consensus 33 l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~---ka~~~~~~PvL~v~WsddgskVf~g~~-Dk~~k~wDL~S~Q-~~ 107 (347)
T KOG0647|consen 33 LAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP---KAQQSHDGPVLDVCWSDDGSKVFSGGC-DKQAKLWDLASGQ-VS 107 (347)
T ss_pred eEeccccCceEEecccCCceEEEEEecCCcccc---hhhhccCCCeEEEEEccCCceEEeecc-CCceEEEEccCCC-ee
Confidence 35677 446667889999999964322211111 334556889999999999988777555 9999999999995 45
Q ss_pred EeecCCCeEEEEEECCCCC--EEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEE
Q 040361 171 SIRQHRDVVSCVAVTTDGS--ILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLY 248 (413)
Q Consensus 171 ~~~~h~~~v~~~~~~~~~~--~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~ 248 (413)
.+-.|.++|.++.|-+... .|+|||.|++|+.||.+... ++.++. ..+.++++.
T Consensus 108 ~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~-----------------------pv~t~~-LPeRvYa~D 163 (347)
T KOG0647|consen 108 QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN-----------------------PVATLQ-LPERVYAAD 163 (347)
T ss_pred eeeecccceeEEEEecCCCcceeEecccccceeecccCCCC-----------------------eeeeee-ccceeeehh
Confidence 5667999999999987544 89999999999999998766 444443 445666665
Q ss_pred EecCCCEEEEeeCCCcEEEEEccCCeEE-EEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCc-e---eeeeec
Q 040361 249 VSVELDIVISGSKDGTCVFHTLREGRYV-RSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGK-H---LASSES 323 (413)
Q Consensus 249 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~---~~~~~~ 323 (413)
.- ..+++.+..+..|.+|+|+++... +.+..+..-.+++++...+....+.|+-+|.+.+..++.. . ....-|
T Consensus 164 v~--~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCH 241 (347)
T KOG0647|consen 164 VL--YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCH 241 (347)
T ss_pred cc--CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEe
Confidence 53 347888888999999999776433 3344444567899999999888899999999999988732 1 111111
Q ss_pred ---------CCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEccCCeEEE
Q 040361 324 ---------NGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFLA 382 (413)
Q Consensus 324 ---------~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 382 (413)
-..|++++|+|....|++++.||+..+||-.....+.+.+.|..+|++..|+.+|.+++
T Consensus 242 R~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifa 309 (347)
T KOG0647|consen 242 RSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFA 309 (347)
T ss_pred ccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEE
Confidence 23578899999999999999999999999998888888899999999999999997665
No 100
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.96 E-value=1.3e-27 Score=202.93 Aligned_cols=274 Identities=14% Similarity=0.223 Sum_probs=227.7
Q ss_pred CCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCc--EEE
Q 040361 93 QLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGR--VVQ 170 (413)
Q Consensus 93 ~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~--~~~ 170 (413)
.+|...+.+++|+. |-+++|+..-...+........+.-...+.++..+|+|+.|++.|. -.++.|||+.... ...
T Consensus 426 tIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGe-astlsiWDLAapTprika 503 (705)
T KOG0639|consen 426 TISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGE-ASTLSIWDLAAPTPRIKA 503 (705)
T ss_pred EecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccc-cceeeeeeccCCCcchhh
Confidence 45677788888876 4577876544444333333344555778899999999999999665 7899999997543 334
Q ss_pred EeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEe
Q 040361 171 SIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVS 250 (413)
Q Consensus 171 ~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~ 250 (413)
.+....-...+++.+||.+..+++..||.|.|||+.+.. .+..|++|.+.+.||.++
T Consensus 504 eltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~-----------------------~VrqfqGhtDGascIdis 560 (705)
T KOG0639|consen 504 ELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT-----------------------LVRQFQGHTDGASCIDIS 560 (705)
T ss_pred hcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce-----------------------eeecccCCCCCceeEEec
Confidence 444445667889999999999999999999999998876 789999999999999999
Q ss_pred cCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCcee-eeeecCCceeE
Q 040361 251 VELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKHL-ASSESNGRLNC 329 (413)
Q Consensus 251 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~i~~ 329 (413)
++|..|-+|+-|.+|+.||+++++.+..... .+.|.++..+|++..+++|-.++.+.+....+... ....|+..|.+
T Consensus 561 ~dGtklWTGGlDntvRcWDlregrqlqqhdF--~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLS 638 (705)
T KOG0639|consen 561 KDGTKLWTGGLDNTVRCWDLREGRQLQQHDF--SSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLS 638 (705)
T ss_pred CCCceeecCCCccceeehhhhhhhhhhhhhh--hhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEE
Confidence 9999999999999999999999988776654 35899999999999999999999999988875443 33568899999
Q ss_pred EEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEccCCeEE-EEcCCCeEEEEEe
Q 040361 330 LELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFL-AGTKDGCLLVYSI 394 (413)
Q Consensus 330 ~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~dg~i~vw~~ 394 (413)
+.|++.|+++++.+.|+.+..|...-|..+.+.+ ..++|.++..+.|.+++ +|+.|..-.+|.+
T Consensus 639 lKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 639 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred EEecccCceeeecCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 9999999999999999999999999998887776 46789999999998777 5999988888876
No 101
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.95 E-value=1.8e-25 Score=200.79 Aligned_cols=332 Identities=17% Similarity=0.212 Sum_probs=260.4
Q ss_pred CeEEEEeecCCcEEEEecCceEEEEEee-------ccCCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceec-c
Q 040361 63 SGIVYVGMLDSSIVLVNQGLTLSVKMWL-------TTQLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELG-S 134 (413)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 134 (413)
-+.+.+|+..|.+.+|+......+..+. ++.-+|.-+.++.|..+|.+.+++...+ .....+++. +
T Consensus 172 LNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~d------kil~sFk~d~g 245 (910)
T KOG1539|consen 172 LNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFD------KILMSFKQDWG 245 (910)
T ss_pred eeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccC------cEEEEEEcccc
Confidence 4568889999999999977665554432 2345888899999999999998643332 222344554 8
Q ss_pred eeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEee-cCCCeEEEEEECCCCCEEEEccCCCcEEEEEecccccccc
Q 040361 135 QCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIR-QHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEK 213 (413)
Q Consensus 135 ~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~ 213 (413)
.+.++.|.-||..++++|...|.+.+||++..+.+..++ .|.+.|....|.|....+++++.|+++++|-.+++....+
T Consensus 246 ~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR 325 (910)
T KOG1539|consen 246 RVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPR 325 (910)
T ss_pred ceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcch
Confidence 899999999999999999988999999999888887776 6999999999999999999999999999998774432111
Q ss_pred cccc----------ceee---------------------------------------------------cCC--------
Q 040361 214 RVRN----------MQIE---------------------------------------------------APR-------- 224 (413)
Q Consensus 214 ~~~~----------~~~~---------------------------------------------------~~~-------- 224 (413)
..+. ..+. .|.
T Consensus 326 ~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~ 405 (910)
T KOG1539|consen 326 LLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFEN 405 (910)
T ss_pred heeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeeccc
Confidence 1000 0000 000
Q ss_pred ------Cceeee-------------c-Cc-eeeee-----cCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEE
Q 040361 225 ------KDYVIV-------------E-TP-FHILC-----GHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRS 278 (413)
Q Consensus 225 ------~~~~~~-------------~-~~-~~~~~-----~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 278 (413)
.+.... . +. ...+. .....+++++.++-|++.+.|+..|.|-+|++.+|-...+
T Consensus 406 ~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~s 485 (910)
T KOG1539|consen 406 AREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKS 485 (910)
T ss_pred chhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecc
Confidence 000000 0 00 11111 1225788999999999999999999999999999988888
Q ss_pred Ee--CCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCceee-eeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCC
Q 040361 279 LC--HPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKHLA-SSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNS 355 (413)
Q Consensus 279 ~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~ 355 (413)
+. ..+..+|+.++.+..++.+++++.+|.+++||.+++.+. .......+.++..+.....++.+.+|-.|+++|..+
T Consensus 486 f~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t 565 (910)
T KOG1539|consen 486 FGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVT 565 (910)
T ss_pred cccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchh
Confidence 83 344679999999999999999999999999999966644 356778899999999999999999999999999999
Q ss_pred CceEEEecCCCCcEEEEEEccCCeEE-EEcCCCeEEEEEecCCccc
Q 040361 356 LEVVRRYSGVGKIITSLAVTPEECFL-AGTKDGCLLVYSIENRRTS 400 (413)
Q Consensus 356 ~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~dg~i~vw~~~~~~~~ 400 (413)
.+.++.+.+|.+.|++++|||||+.+ +++.|++|++||+.++...
T Consensus 566 ~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lI 611 (910)
T KOG1539|consen 566 RKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLI 611 (910)
T ss_pred hhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCccee
Confidence 99999999999999999999999876 6999999999999987543
No 102
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.6e-26 Score=185.56 Aligned_cols=265 Identities=14% Similarity=0.228 Sum_probs=208.4
Q ss_pred ecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEecccc--
Q 040361 132 LGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRAR-- 209 (413)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~-- 209 (413)
|...+..++... ++.++.+++.|.+.+||.+++|+++..+.+|.+.|+++.|++.+.++++++.|++..||...-.-
T Consensus 147 HkDGiW~Vaa~~-tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~v 225 (481)
T KOG0300|consen 147 HKDGIWHVAADS-TQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEV 225 (481)
T ss_pred cccceeeehhhc-CCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcC
Confidence 344555554443 34466677789999999999999999999999999999999999999999999999999732111
Q ss_pred ----cccc-----cccccee------ecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCe
Q 040361 210 ----APEK-----RVRNMQI------EAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGR 274 (413)
Q Consensus 210 ----~~~~-----~~~~~~~------~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 274 (413)
.+.. ....... .....+..-+..++..+.+|.+.|.+..|...++.+++++.|.+..+||++++.
T Consensus 226 P~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge 305 (481)
T KOG0300|consen 226 PSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGE 305 (481)
T ss_pred CCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCc
Confidence 0000 0000000 001122223455788899999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCcee---eeeecCCceeEEEecCCCCEEEEeCCCCeEEEE
Q 040361 275 YVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKHL---ASSESNGRLNCLELSACGQFLVCGGDQGQIVVR 351 (413)
Q Consensus 275 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~ 351 (413)
.+..+.+| ....+.++-+|..+++++++.|.+.++||.+.... ...+|...|+++.|..+ ..+++|++|.+|+||
T Consensus 306 ~v~~LtGH-d~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvW 383 (481)
T KOG0300|consen 306 VVNILTGH-DSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVW 383 (481)
T ss_pred eeccccCc-chhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecC-CceeecCCCceEEEe
Confidence 99999877 46889999999999999999999999999983322 23578899999999865 467899999999999
Q ss_pred ECCCCc-eEEEecCCCCcEEEEEEccCCeEEE-EcCCCeEEEEEecCCccc
Q 040361 352 SMNSLE-VVRRYSGVGKIITSLAVTPEECFLA-GTKDGCLLVYSIENRRTS 400 (413)
Q Consensus 352 d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~-~~~dg~i~vw~~~~~~~~ 400 (413)
|+++.+ ++.++. ..++++.++.+..+.+++ --++..|++||+...+..
T Consensus 384 dLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~Rla 433 (481)
T KOG0300|consen 384 DLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLA 433 (481)
T ss_pred eeccccCcceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccc
Confidence 998754 567776 567899999998777887 566778999999875543
No 103
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=4.1e-26 Score=183.25 Aligned_cols=277 Identities=14% Similarity=0.087 Sum_probs=211.1
Q ss_pred cCCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCC---CcE
Q 040361 92 TQLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALND---GRV 168 (413)
Q Consensus 92 ~~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~---~~~ 168 (413)
.+||.||+.|++++.|+++++|+..--..+....+...++.+ ....+.|.||-+.++++......+++|.+.. |..
T Consensus 92 ~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~d-hpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~ 170 (420)
T KOG2096|consen 92 VAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYD-HPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSG 170 (420)
T ss_pred eEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCC-CceEEEECCCcceEEEEEccCCEEEEEEeeecccCCC
Confidence 368999999999999999999753221222223344444444 6678899999998888777778999998742 221
Q ss_pred EE---------EeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeec
Q 040361 169 VQ---------SIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCG 239 (413)
Q Consensus 169 ~~---------~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (413)
.. .-+.|.-.|..+....++.+|++++.|..|.+|++. ++ .+..+..
T Consensus 171 ~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq-----------------------~L~~idt 226 (420)
T KOG2096|consen 171 SHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQ-----------------------LLQSIDT 226 (420)
T ss_pred CcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cc-----------------------eeeeecc
Confidence 11 112366777778888889999999999999999998 54 3555555
Q ss_pred CCCCeEEEEEecCCCEEEEeeCCCcEEEEEcc---CCe-----EEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEE
Q 040361 240 HDDIITCLYVSVELDIVISGSKDGTCVFHTLR---EGR-----YVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLF 311 (413)
Q Consensus 240 h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~---~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~ 311 (413)
....-+..+.+|+|+++++++----|++|..- .|. .+.++++| .+.|..++|+++...+++.+.||++++|
T Consensus 227 nq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH-~saV~~~aFsn~S~r~vtvSkDG~wriw 305 (420)
T KOG2096|consen 227 NQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGH-QSAVLAAAFSNSSTRAVTVSKDGKWRIW 305 (420)
T ss_pred ccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccc-hhheeeeeeCCCcceeEEEecCCcEEEe
Confidence 55566778899999999999999999999863 222 24456665 5689999999999999999999999999
Q ss_pred EeCCce--------eee-----eecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEec-CCCCcEEEEEEccC
Q 040361 312 SINGKH--------LAS-----SESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYS-GVGKIITSLAVTPE 377 (413)
Q Consensus 312 d~~~~~--------~~~-----~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~v~~~~~~~~ 377 (413)
|++-+. +.. ....+....++++|+|+.|+.+.. ..+++|..++++...+++ .|+..|.+++|+++
T Consensus 306 dtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-s~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~ 384 (420)
T KOG2096|consen 306 DTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG-SDLKVFASEDGKDYPELEDIHSTTISSISYSSD 384 (420)
T ss_pred eccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-CceEEEEcccCccchhHHHhhcCceeeEEecCC
Confidence 986211 111 122344558999999999988754 479999999998887775 58999999999999
Q ss_pred CeEEEEcCCCeEEEEEec
Q 040361 378 ECFLAGTKDGCLLVYSIE 395 (413)
Q Consensus 378 ~~~l~~~~dg~i~vw~~~ 395 (413)
|++++.+.|..+++..-.
T Consensus 385 g~~~atcGdr~vrv~~nt 402 (420)
T KOG2096|consen 385 GKYIATCGDRYVRVIRNT 402 (420)
T ss_pred CcEEeeecceeeeeecCC
Confidence 999998889999998743
No 104
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=5.4e-26 Score=199.51 Aligned_cols=262 Identities=16% Similarity=0.208 Sum_probs=211.3
Q ss_pred CCeEEEEeecCCcEEEEecCceEEEEEeec-------cCCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecc
Q 040361 62 PSGIVYVGMLDSSIVLVNQGLTLSVKMWLT-------TQLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGS 134 (413)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (413)
..++++++.. ..+++|+........+... ..++++|.+|+.|..+|.+.+|+. ........-...|..
T Consensus 187 s~n~laValg-~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~----~~~k~~~~~~~~h~~ 261 (484)
T KOG0305|consen 187 SANVLAVALG-QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDV----KEQKKTRTLRGSHAS 261 (484)
T ss_pred cCCeEEEEec-ceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEeh----hhccccccccCCcCc
Confidence 3456666665 5899999877665555443 357999999999999999999653 211111111111466
Q ss_pred eeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEE-eecCCCeEEEEEECCCCCEEEEccCCCcEEEEEecccccccc
Q 040361 135 QCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQS-IRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEK 213 (413)
Q Consensus 135 ~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~ 213 (413)
.+-+++|. ..++.+|+.|+.|..+|+...+.... +.+|...|..++|++|+++|++|+.|+.+.|||.....
T Consensus 262 rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~---- 334 (484)
T KOG0305|consen 262 RVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPE---- 334 (484)
T ss_pred eeEEEecc---CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcc----
Confidence 67777776 66778899999999999987765544 88899999999999999999999999999999996555
Q ss_pred ccccceeecCCCceeeecCceeeeecCCCCeEEEEEec-CCCEEEEee--CCCcEEEEEccCCeEEEEEeCCCCCceeeE
Q 040361 214 RVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSV-ELDIVISGS--KDGTCVFHTLREGRYVRSLCHPSGSALSKL 290 (413)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~-~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~ 290 (413)
+...+..|.++|.+++|+| ...+||+|+ .|++|++||..++..+..+.. +..|.++
T Consensus 335 -------------------p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt--gsQVcsL 393 (484)
T KOG0305|consen 335 -------------------PKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT--GSQVCSL 393 (484)
T ss_pred -------------------ccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc--CCceeeE
Confidence 7888999999999999999 556888765 699999999999999988875 5689999
Q ss_pred EEccCCcEEEEE--CCCCeEEEEEeCCcee--eeeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCC
Q 040361 291 AASRHGRIVLYG--DDDLSLHLFSINGKHL--ASSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSL 356 (413)
Q Consensus 291 ~~~~~~~~l~~~--~~d~~i~i~d~~~~~~--~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~ 356 (413)
.|++..+.|+++ ..++.|.+|+...... ...+|...|..++++|||..+++|+.|.++++|++...
T Consensus 394 ~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 394 IWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred EEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 999988777664 4577899999984332 33679999999999999999999999999999998874
No 105
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=6.8e-26 Score=181.31 Aligned_cols=255 Identities=15% Similarity=0.185 Sum_probs=196.3
Q ss_pred CCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEe
Q 040361 93 QLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSI 172 (413)
Q Consensus 93 ~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~ 172 (413)
.|+|.+..|+.++.||.+++++.... .+...+.+..++++++|.++ ...+ +|+.||.|+.+|++++.... +
T Consensus 20 ~f~~~~~~LLvssWDgslrlYdv~~~------~l~~~~~~~~plL~c~F~d~-~~~~-~G~~dg~vr~~Dln~~~~~~-i 90 (323)
T KOG1036|consen 20 KFSPSSSDLLVSSWDGSLRLYDVPAN------SLKLKFKHGAPLLDCAFADE-STIV-TGGLDGQVRRYDLNTGNEDQ-I 90 (323)
T ss_pred EEcCcCCcEEEEeccCcEEEEeccch------hhhhheecCCceeeeeccCC-ceEE-EeccCceEEEEEecCCccee-e
Confidence 35677777777788888888754332 34456677888899988763 3333 46669999999998877654 4
Q ss_pred ecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecC
Q 040361 173 RQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVE 252 (413)
Q Consensus 173 ~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~ 252 (413)
-.|..+|.|+.+++....+++||.|++|++||.+... ....+. ....|.++.. .
T Consensus 91 gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~-----------------------~~~~~d-~~kkVy~~~v--~ 144 (323)
T KOG1036|consen 91 GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV-----------------------VVGTFD-QGKKVYCMDV--S 144 (323)
T ss_pred ccCCCceEEEEeeccCCeEEEcccCccEEEEeccccc-----------------------cccccc-cCceEEEEec--c
Confidence 4599999999999988899999999999999998643 222232 3347888776 4
Q ss_pred CCEEEEeeCCCcEEEEEccCCeEEEEE-eCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCc------eeeee----
Q 040361 253 LDIVISGSKDGTCVFHTLREGRYVRSL-CHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGK------HLASS---- 321 (413)
Q Consensus 253 ~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~------~~~~~---- 321 (413)
++.|+.|+.|..+.+||+++.....+. ...-...++++++-|++.-+++++-||.|.+=.++.. +....
T Consensus 145 g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~ 224 (323)
T KOG1036|consen 145 GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRL 224 (323)
T ss_pred CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeec
Confidence 668999999999999999987654422 2222457899999998888999999998877554422 11111
Q ss_pred -----ecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEccCCeEEE
Q 040361 322 -----ESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFLA 382 (413)
Q Consensus 322 -----~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 382 (413)
..-.+|++++|+|-...+++|+.||.|.+||+.+.+.+.++......|.+++|+.+|..||
T Consensus 225 ~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LA 290 (323)
T KOG1036|consen 225 SEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLA 290 (323)
T ss_pred ccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEE
Confidence 1124799999999999999999999999999999999999988888899999999987775
No 106
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.95 E-value=5.6e-26 Score=178.12 Aligned_cols=205 Identities=17% Similarity=0.309 Sum_probs=180.5
Q ss_pred EeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEe
Q 040361 171 SIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVS 250 (413)
Q Consensus 171 ~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~ 250 (413)
.+++|..+++.+.++.+|.+|++++.|.++.+|-..+++ .+.++.+|.+.|+|+..+
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGe-----------------------rlGty~GHtGavW~~Did 61 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGE-----------------------RLGTYDGHTGAVWCCDID 61 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCc-----------------------eeeeecCCCceEEEEEec
Confidence 357899999999999999999999999999999988887 688999999999999999
Q ss_pred cCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCC-----CeEEEEEeCC-------c--
Q 040361 251 VELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDD-----LSLHLFSING-------K-- 316 (413)
Q Consensus 251 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~-------~-- 316 (413)
.+.+.+++|+.|.++++||..+|+.+..++.+ .+|..+.|+++|++++....+ +.|.++|++. +
T Consensus 62 ~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~--~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep 139 (327)
T KOG0643|consen 62 WDSKHLITGSADQTAKLWDVETGKQLATWKTN--SPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEP 139 (327)
T ss_pred CCcceeeeccccceeEEEEcCCCcEEEEeecC--CeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCc
Confidence 99999999999999999999999999999874 589999999999998887653 5799999972 1
Q ss_pred eeeeeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCce-EEEecCCCCcEEEEEEccCC-eEEEEcCCCeEEEEEe
Q 040361 317 HLASSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEV-VRRYSGVGKIITSLAVTPEE-CFLAGTKDGCLLVYSI 394 (413)
Q Consensus 317 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~-~~~~~~~~~~v~~~~~~~~~-~~l~~~~dg~i~vw~~ 394 (413)
.+....++..++.+.|.|-+++|++|.+||.|.+||+++++. +...+.|...|+.+.+++|. .|++++.|.+-++||+
T Consensus 140 ~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~ 219 (327)
T KOG0643|consen 140 YLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDV 219 (327)
T ss_pred eEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeec
Confidence 122345678899999999999999999999999999999854 45557899999999999996 5668999999999999
Q ss_pred cCCccc
Q 040361 395 ENRRTS 400 (413)
Q Consensus 395 ~~~~~~ 400 (413)
.+-+.+
T Consensus 220 ~tl~v~ 225 (327)
T KOG0643|consen 220 RTLEVL 225 (327)
T ss_pred cceeeE
Confidence 886433
No 107
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=3.8e-25 Score=169.51 Aligned_cols=277 Identities=15% Similarity=0.191 Sum_probs=214.4
Q ss_pred EEEecCCCCCCeEEEEeecCCcEEEEecCceEEE---------------E-------EeeccCCCCCCceeeecCCCCcc
Q 040361 53 SIICSTRHQPSGIVYVGMLDSSIVLVNQGLTLSV---------------K-------MWLTTQLQSGGNFTFSGSQDPFF 110 (413)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~-------~~~~~~~s~~~~~l~~~~~d~~~ 110 (413)
.+....++|++.+..+|+....+.+-........ + .....++||+|.++++|+.|.++
T Consensus 34 airav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~i 113 (350)
T KOG0641|consen 34 AIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTI 113 (350)
T ss_pred heeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCceE
Confidence 4555679999999999988776655432111000 0 01123589999999999999999
Q ss_pred ccCCCcCCCcccCCCCcccceecceeEEEEecCC----CCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECC
Q 040361 111 GVGADILSPRNVGSPLAESFELGSQCFTTMQTPS----ENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTT 186 (413)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~ 186 (413)
++-...-+.-....+..+.-.|.+.+..++|..+ +..|+.+|..|..|++-|..+|+..+.+.+|.+.|.++ ++=
T Consensus 114 k~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal-ysw 192 (350)
T KOG0641|consen 114 KVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL-YSW 192 (350)
T ss_pred EEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE-EEe
Confidence 8753222333333444444455677888887643 45566666668889999999999999999999999887 344
Q ss_pred CCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeec-------CCCCeEEEEEecCCCEEEEe
Q 040361 187 DGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCG-------HDDIITCLYVSVELDIVISG 259 (413)
Q Consensus 187 ~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------h~~~i~~~~~~~~~~~l~s~ 259 (413)
++-++++|+.|.+|+.||++-.. ++.++.. ....|.+++..|.|++|++|
T Consensus 193 n~~m~~sgsqdktirfwdlrv~~-----------------------~v~~l~~~~~~~glessavaav~vdpsgrll~sg 249 (350)
T KOG0641|consen 193 NGAMFASGSQDKTIRFWDLRVNS-----------------------CVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASG 249 (350)
T ss_pred cCcEEEccCCCceEEEEeeeccc-----------------------eeeeccCcccCCCcccceeEEEEECCCcceeeec
Confidence 68899999999999999997665 2332211 23578999999999999999
Q ss_pred eCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCcee------eeeecCCceeEEEec
Q 040361 260 SKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKHL------ASSESNGRLNCLELS 333 (413)
Q Consensus 260 ~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~------~~~~~~~~i~~~~~s 333 (413)
-.|....+||++-+++++.+..+ ...|.++.|+|...++++++.|..|++-|+++... ....|...+..+.|+
T Consensus 250 ~~dssc~lydirg~r~iq~f~ph-sadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh 328 (350)
T KOG0641|consen 250 HADSSCMLYDIRGGRMIQRFHPH-SADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWH 328 (350)
T ss_pred cCCCceEEEEeeCCceeeeeCCC-ccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEec
Confidence 99999999999999999999766 56899999999999999999999999999986432 234688889999999
Q ss_pred CCCCEEEEeCCCCeEEEEECC
Q 040361 334 ACGQFLVCGGDQGQIVVRSMN 354 (413)
Q Consensus 334 ~~~~~l~~~~~dg~i~v~d~~ 354 (413)
|..--+++.+.|.++.+|-+.
T Consensus 329 ~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 329 PQDFSFISSSADKTATLWALN 349 (350)
T ss_pred CccceeeeccCcceEEEeccC
Confidence 999999999999999999764
No 108
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=7.3e-26 Score=190.64 Aligned_cols=231 Identities=19% Similarity=0.323 Sum_probs=193.8
Q ss_pred CCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCC
Q 040361 145 ENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPR 224 (413)
Q Consensus 145 ~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 224 (413)
+.+++++......+.+|.+..........--.+.|.|++-+|+|.+|+.|+..|.|++|.+.++.
T Consensus 50 ~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~--------------- 114 (476)
T KOG0646|consen 50 NEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGI--------------- 114 (476)
T ss_pred hhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEecccc---------------
Confidence 46677766666789999987655444333467889999999999999999999999999999998
Q ss_pred CceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEcc---------CCeEEEEEeCCCCCceeeEEEccC
Q 040361 225 KDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLR---------EGRYVRSLCHPSGSALSKLAASRH 295 (413)
Q Consensus 225 ~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~---------~~~~~~~~~~~~~~~v~~~~~~~~ 295 (413)
.+..+.+|-..|+|+.|+.|+.+|+||+.||.|.+|++. +-.+.+.+..| .-+|+++...+.
T Consensus 115 --------LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~H-tlsITDl~ig~G 185 (476)
T KOG0646|consen 115 --------LLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDH-TLSITDLQIGSG 185 (476)
T ss_pred --------HHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccC-cceeEEEEecCC
Confidence 677889999999999999999999999999999999864 23455666655 568999888765
Q ss_pred --CcEEEEECCCCeEEEEEeC-CceeeeeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCC----------------
Q 040361 296 --GRIVLYGDDDLSLHLFSIN-GKHLASSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSL---------------- 356 (413)
Q Consensus 296 --~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~---------------- 356 (413)
..++++++.|.++++||+. +..+.....+..+.+++++|-++.+++|+.+|.|.+.++...
T Consensus 186 g~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~ 265 (476)
T KOG0646|consen 186 GTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEEN 265 (476)
T ss_pred CccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCccccccccccccccc
Confidence 4689999999999999998 666677888999999999999999999999999999877542
Q ss_pred ceEEEecCCCC--cEEEEEEccCCeEE-EEcCCCeEEEEEecCCcc
Q 040361 357 EVVRRYSGVGK--IITSLAVTPEECFL-AGTKDGCLLVYSIENRRT 399 (413)
Q Consensus 357 ~~~~~~~~~~~--~v~~~~~~~~~~~l-~~~~dg~i~vw~~~~~~~ 399 (413)
..+..+.+|.+ .|+|++.+-||.+| +|+.||.++|||+.+.+.
T Consensus 266 t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~ 311 (476)
T KOG0646|consen 266 TQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQC 311 (476)
T ss_pred ceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHH
Confidence 23456678887 99999999998766 699999999999987643
No 109
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.95 E-value=1e-25 Score=196.61 Aligned_cols=297 Identities=14% Similarity=0.129 Sum_probs=207.8
Q ss_pred eeeecCCCCccccCCCcCCCcc-cCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEE--eecCC
Q 040361 100 FTFSGSQDPFFGVGADILSPRN-VGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQS--IRQHR 176 (413)
Q Consensus 100 ~l~~~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~--~~~h~ 176 (413)
.||.+..||.+.+++..-.... ....+...+.|...++.+.|.| ++.++++.+.|.++++||+.++++... +.+|.
T Consensus 66 iLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~ 144 (720)
T KOG0321|consen 66 ILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHT 144 (720)
T ss_pred eEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-CceeEEEccCCceeeeeeeccceeecceeecccc
Confidence 4556666666666432111111 1122445566788999999999 666666566699999999999988876 88999
Q ss_pred CeEEEEEECC-CCCEEEEccCCCcEEEEEeccccccc--c---ccccceeecCCCceeeecCceeeeecCCCCeEE---E
Q 040361 177 DVVSCVAVTT-DGSILATGSYDTTVMVWEVIRARAPE--K---RVRNMQIEAPRKDYVIVETPFHILCGHDDIITC---L 247 (413)
Q Consensus 177 ~~v~~~~~~~-~~~~l~s~s~dg~i~iw~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~---~ 247 (413)
..|.+++|.| |...|++|+.||.|.|||++...... . .+.......+ ...-.....+..-..+...|.+ +
T Consensus 145 ~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~p-tpskp~~kr~~k~kA~s~ti~ssvTv 223 (720)
T KOG0321|consen 145 GSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAP-TPSKPLKKRIRKWKAASNTIFSSVTV 223 (720)
T ss_pred cccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCC-CCCchhhccccccccccCceeeeeEE
Confidence 9999999999 46678999999999999997654111 0 0111111111 1111111223344456666655 5
Q ss_pred EEecCCCEEEEeeC-CCcEEEEEccCCeEEEEEe------CCC----CCceeeEEEccCCcEEEEECCCCeEEEEEeCCc
Q 040361 248 YVSVELDIVISGSK-DGTCVFHTLREGRYVRSLC------HPS----GSALSKLAASRHGRIVLYGDDDLSLHLFSINGK 316 (413)
Q Consensus 248 ~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~------~~~----~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 316 (413)
.+..|...||+++. |+.|++||+++........ .+. ...+.++..+..|.++++.+.|+.|++||+.+.
T Consensus 224 v~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~ 303 (720)
T KOG0321|consen 224 VLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSL 303 (720)
T ss_pred EEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEecccc
Confidence 56688899999888 9999999999765443321 111 235777888888999999999999999999843
Q ss_pred eeeee-ecC-----CceeEEEecCCCCEEEEeCCCCeEEEEECCCCc-eEEEecCCCCcEEEEEEccC--CeEEEEcCCC
Q 040361 317 HLASS-ESN-----GRLNCLELSACGQFLVCGGDQGQIVVRSMNSLE-VVRRYSGVGKIITSLAVTPE--ECFLAGTKDG 387 (413)
Q Consensus 317 ~~~~~-~~~-----~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~-~~~~~~~~~~~v~~~~~~~~--~~~l~~~~dg 387 (413)
.+... .+. ..-..-..+|++.++++|+.|...++|.+.+.+ ....+.+|.-.|++++|.|. ..++++++|.
T Consensus 304 s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~ 383 (720)
T KOG0321|consen 304 SISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDF 383 (720)
T ss_pred CcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCc
Confidence 33221 111 112233578999999999999999999998765 34566789999999999986 6789999999
Q ss_pred eEEEEEecCCc
Q 040361 388 CLLVYSIENRR 398 (413)
Q Consensus 388 ~i~vw~~~~~~ 398 (413)
.+++|++..+-
T Consensus 384 ~~kiW~l~~~l 394 (720)
T KOG0321|consen 384 RVKIWRLSNGL 394 (720)
T ss_pred ceEEEeccCch
Confidence 99999997653
No 110
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.94 E-value=6.4e-24 Score=186.27 Aligned_cols=270 Identities=16% Similarity=0.182 Sum_probs=193.2
Q ss_pred ceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCe
Q 040361 99 NFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDV 178 (413)
Q Consensus 99 ~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~ 178 (413)
+.+++++.|+.+.+|+.... .....+..+..+..+.++|+++.+++++..++.|++||..+++....+..+..
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~------~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~- 74 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATL------EVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD- 74 (300)
T ss_pred cEEEEecCCCEEEEEECCCC------ceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-
Confidence 34566677777777532111 11112222344567888999998877777789999999999988877765544
Q ss_pred EEEEEECCCCCEEEE-ccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEE
Q 040361 179 VSCVAVTTDGSILAT-GSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVI 257 (413)
Q Consensus 179 v~~~~~~~~~~~l~s-~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~ 257 (413)
+..++|+|+++.+++ ++.|+.+++||+.+.+ .+..+. +...+.+++|+|++++++
T Consensus 75 ~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~-----------------------~~~~~~-~~~~~~~~~~~~dg~~l~ 130 (300)
T TIGR03866 75 PELFALHPNGKILYIANEDDNLVTVIDIETRK-----------------------VLAEIP-VGVEPEGMAVSPDGKIVV 130 (300)
T ss_pred ccEEEECCCCCEEEEEcCCCCeEEEEECCCCe-----------------------EEeEee-CCCCcceEEECCCCCEEE
Confidence 567899999987755 4568999999998755 233333 233467899999999999
Q ss_pred EeeCCC-cEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEE-CCCCeEEEEEeCCcee-eeeec--------CCc
Q 040361 258 SGSKDG-TCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYG-DDDLSLHLFSINGKHL-ASSES--------NGR 326 (413)
Q Consensus 258 s~~~dg-~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~-~~~~~--------~~~ 326 (413)
+++.++ .+.+||.++++....+... ..+..++|+++++.++++ ..++.|++||++.... ..... ...
T Consensus 131 ~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~ 208 (300)
T TIGR03866 131 NTSETTNMAHFIDTKTYEIVDNVLVD--QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQ 208 (300)
T ss_pred EEecCCCeEEEEeCCCCeEEEEEEcC--CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCC
Confidence 888775 4677899888776655433 245779999999988655 4689999999984432 22211 112
Q ss_pred eeEEEecCCCCEEEEe-CCCCeEEEEECCCCceEEEecCCCCcEEEEEEccCCeEE-EE-cCCCeEEEEEecCCccccc
Q 040361 327 LNCLELSACGQFLVCG-GDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFL-AG-TKDGCLLVYSIENRRTSLP 402 (413)
Q Consensus 327 i~~~~~s~~~~~l~~~-~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~-~~dg~i~vw~~~~~~~~~~ 402 (413)
...++|+|++++++++ ..++.+.+||+.+++.+..+. +...+.+++|+|+|.++ ++ +.+|.|++||+++++....
T Consensus 209 ~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~ 286 (300)
T TIGR03866 209 PVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKS 286 (300)
T ss_pred ccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEE
Confidence 3568899999986554 556789999999988776654 44578999999998655 44 5689999999999775433
No 111
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=4.4e-25 Score=200.38 Aligned_cols=254 Identities=19% Similarity=0.226 Sum_probs=201.0
Q ss_pred CCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccce-ecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEE
Q 040361 93 QLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFE-LGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQS 171 (413)
Q Consensus 93 ~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~ 171 (413)
.|.|+|.++++++.|+.++.|...-.. .. ...+. ++..+.+++. ...++++ |+.+++|.+|...+++.-..
T Consensus 20 ~~d~~gefi~tcgsdg~ir~~~~~sd~---e~--P~ti~~~g~~v~~ia~--~s~~f~~-~s~~~tv~~y~fps~~~~~i 91 (933)
T KOG1274|consen 20 CYDPDGEFICTCGSDGDIRKWKTNSDE---EE--PETIDISGELVSSIAC--YSNHFLT-GSEQNTVLRYKFPSGEEDTI 91 (933)
T ss_pred EEcCCCCEEEEecCCCceEEeecCCcc---cC--CchhhccCceeEEEee--cccceEE-eeccceEEEeeCCCCCccce
Confidence 357889999999999999997532221 11 11222 3444555433 3345554 66799999999998887767
Q ss_pred eecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEec
Q 040361 172 IRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSV 251 (413)
Q Consensus 172 ~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~ 251 (413)
+....-++++++|+.+|++++.||.|-.|++-++.+.. ....+.+|+++|.++.|+|
T Consensus 92 L~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s-----------------------~~~~lrgh~apVl~l~~~p 148 (933)
T KOG1274|consen 92 LARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSS-----------------------QEKVLRGHDAPVLQLSYDP 148 (933)
T ss_pred eeeeeccceEEEEecCCcEEEeecCceeEEEEeccccc-----------------------hheeecccCCceeeeeEcC
Confidence 76677899999999999999999999999999998877 6788999999999999999
Q ss_pred CCCEEEEeeCCCcEEEEEccCCeEEEEEeC-------CCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCceeee----
Q 040361 252 ELDIVISGSKDGTCVFHTLREGRYVRSLCH-------PSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKHLAS---- 320 (413)
Q Consensus 252 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~---- 320 (413)
++++||+.+.||.|++||+.++.....+.. .....+..++|+|++..+++...|+.|++|+..+-....
T Consensus 149 ~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~ 228 (933)
T KOG1274|consen 149 KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRD 228 (933)
T ss_pred CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecc
Confidence 999999999999999999999887766542 112356778999999999999999999999998644432
Q ss_pred eecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEccCCeEE
Q 040361 321 SESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFL 381 (413)
Q Consensus 321 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 381 (413)
..+...+.+++|+|+|+|||+++.||.|.|||..+-+. ......|.+++|.|+..-+
T Consensus 229 ~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~i 285 (933)
T KOG1274|consen 229 KLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAI 285 (933)
T ss_pred cccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCee
Confidence 22344599999999999999999999999999988222 2235689999999996444
No 112
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.4e-26 Score=206.18 Aligned_cols=243 Identities=14% Similarity=0.135 Sum_probs=199.6
Q ss_pred cceeEEEEecCCCCEEEEeecCCCeEEEEEcCC---CcEEEEeecCCCeEEEEEECC-CCCEEEEccCCCcEEEEEeccc
Q 040361 133 GSQCFTTMQTPSENFLITCGNWENSFQVIALND---GRVVQSIRQHRDVVSCVAVTT-DGSILATGSYDTTVMVWEVIRA 208 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~---~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~dg~i~iw~~~~~ 208 (413)
.-.+-.+.|..-...++++++..|.|.+||+.. .+.+..+..|...++++.|++ ...+|++||.||.|++||++..
T Consensus 87 ~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~ 166 (839)
T KOG0269|consen 87 FYSAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSK 166 (839)
T ss_pred eeehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecc
Confidence 445666778877777888888899999999987 667778889999999999998 4678999999999999999988
Q ss_pred cccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEec-CCCEEEEeeCCCcEEEEEccCCe-EEEEEeCCCCCc
Q 040361 209 RAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSV-ELDIVISGSKDGTCVFHTLREGR-YVRSLCHPSGSA 286 (413)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~~ 286 (413)
. ...++.+....|..+.|+| .+..|+++...|.+.+||++... +...+..| .++
T Consensus 167 ~-----------------------S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH-~Gp 222 (839)
T KOG0269|consen 167 K-----------------------SKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAH-NGP 222 (839)
T ss_pred c-----------------------ccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcc-cCc
Confidence 7 5667778888999999998 56789999999999999998654 44455555 669
Q ss_pred eeeEEEccCCcEEEEECCCCeEEEEEeCC---ceeeeeecCCceeEEEecCCCCE-EEEeC--CCCeEEEEECCCCc-eE
Q 040361 287 LSKLAASRHGRIVLYGDDDLSLHLFSING---KHLASSESNGRLNCLELSACGQF-LVCGG--DQGQIVVRSMNSLE-VV 359 (413)
Q Consensus 287 v~~~~~~~~~~~l~~~~~d~~i~i~d~~~---~~~~~~~~~~~i~~~~~s~~~~~-l~~~~--~dg~i~v~d~~~~~-~~ 359 (413)
|.++.|+|++.+||+|+.|++|++||+.+ +.........++.++.|-|...+ |++++ .|-.|+|||++..- +.
T Consensus 223 V~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~ 302 (839)
T KOG0269|consen 223 VLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPY 302 (839)
T ss_pred eEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccc
Confidence 99999999999999999999999999974 33444567789999999998765 55543 47789999998643 45
Q ss_pred EEecCCCCcEEEEEEccC--CeEEEEcCCCeEEEEEecCCcc
Q 040361 360 RRYSGVGKIITSLAVTPE--ECFLAGTKDGCLLVYSIENRRT 399 (413)
Q Consensus 360 ~~~~~~~~~v~~~~~~~~--~~~l~~~~dg~i~vw~~~~~~~ 399 (413)
.++..|...++.++|... ..+++++.||.|..-.+++...
T Consensus 303 ~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat~ 344 (839)
T KOG0269|consen 303 ATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNATT 344 (839)
T ss_pred eeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcccC
Confidence 778889999999999873 3466899999988766665443
No 113
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=3.1e-25 Score=178.30 Aligned_cols=279 Identities=19% Similarity=0.229 Sum_probs=225.3
Q ss_pred EEeeccCCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEc---
Q 040361 87 KMWLTTQLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIAL--- 163 (413)
Q Consensus 87 ~~~~~~~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~--- 163 (413)
-+|....-+-. +.+.+++.|.+-++|..+ .+..+.+..+|.+.+.++.|++.+..++. ++.|++-.||..
T Consensus 150 GiW~Vaa~~tq-pi~gtASADhTA~iWs~E-----sg~CL~~Y~GH~GSVNsikfh~s~~L~lT-aSGD~taHIW~~av~ 222 (481)
T KOG0300|consen 150 GIWHVAADSTQ-PICGTASADHTARIWSLE-----SGACLATYTGHTGSVNSIKFHNSGLLLLT-ASGDETAHIWKAAVN 222 (481)
T ss_pred ceeeehhhcCC-cceeecccccceeEEeec-----cccceeeecccccceeeEEeccccceEEE-ccCCcchHHHHHhhc
Confidence 35654433222 377889999999997432 23455666677888999999987776665 555999999972
Q ss_pred ---CC--------C--------------------------cEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEec
Q 040361 164 ---ND--------G--------------------------RVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVI 206 (413)
Q Consensus 164 ---~~--------~--------------------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~ 206 (413)
.. + -++..+.+|.+.|.+..|-..|+.+++++.|.+..+||++
T Consensus 223 ~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVE 302 (481)
T KOG0300|consen 223 WEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVE 302 (481)
T ss_pred CcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeec
Confidence 11 0 1345677899999999999999999999999999999999
Q ss_pred cccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCC-eEEEEEeCCCCC
Q 040361 207 RARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREG-RYVRSLCHPSGS 285 (413)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~ 285 (413)
++. ++..+.+|+...+.++-+|..+++++++.|.+.++||.+.. ..+..|.+| ..
T Consensus 303 tge-----------------------~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGH-td 358 (481)
T KOG0300|consen 303 TGE-----------------------VVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGH-TD 358 (481)
T ss_pred cCc-----------------------eeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeeccc-cc
Confidence 998 78899999999999999999999999999999999999844 345556666 45
Q ss_pred ceeeEEEccCCcEEEEECCCCeEEEEEeCC--ceeeeeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEe-
Q 040361 286 ALSKLAASRHGRIVLYGDDDLSLHLFSING--KHLASSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRY- 362 (413)
Q Consensus 286 ~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~- 362 (413)
.|++..|..+. .+++|+.|.+|++||++. ..+.....+.+++.++.+..+..++.-.++..|++||+...+ +..+
T Consensus 359 tVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~R-laRlP 436 (481)
T KOG0300|consen 359 TVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNR-LARLP 436 (481)
T ss_pred ceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCc-cccCC
Confidence 89999998764 588999999999999984 455667788999999999888899999999999999997543 3333
Q ss_pred ----cCCCCcEEEEEEccC---CeEEEEcCCCeEEEEEecCCc
Q 040361 363 ----SGVGKIITSLAVTPE---ECFLAGTKDGCLLVYSIENRR 398 (413)
Q Consensus 363 ----~~~~~~v~~~~~~~~---~~~l~~~~dg~i~vw~~~~~~ 398 (413)
.+|...|+|++|..+ ..+++++-|..+.-|++...+
T Consensus 437 rtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 437 RTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred cccccccceeeeeeeccccCcccccccccccceeeeeEecccC
Confidence 478999999999976 468899999999999997654
No 114
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.6e-25 Score=173.34 Aligned_cols=236 Identities=13% Similarity=0.184 Sum_probs=185.5
Q ss_pred EEecCCCCEEEEeecCCCeEEEEEcCCC---cEEEEeecCCCeEEEEEECC--CCCEEEEccCCCcEEEEEecccccccc
Q 040361 139 TMQTPSENFLITCGNWENSFQVIALNDG---RVVQSIRQHRDVVSCVAVTT--DGSILATGSYDTTVMVWEVIRARAPEK 213 (413)
Q Consensus 139 ~~~~~~~~~l~~~g~~d~~i~i~~~~~~---~~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~dg~i~iw~~~~~~~~~~ 213 (413)
+...--|.+|+.+++ |++|+|+..... +.+.++.+|.++|..++|.. -|..|++++.||.|.||.-.+++.
T Consensus 17 a~lDyygkrlATcsS-D~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w--- 92 (299)
T KOG1332|consen 17 AQLDYYGKRLATCSS-DGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRW--- 92 (299)
T ss_pred hhhhhhcceeeeecC-CccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCch---
Confidence 333345788888777 999999998653 56789999999999999965 699999999999999999887752
Q ss_pred ccccceeecCCCceeeecCceeeeecCCCCeEEEEEecC--CCEEEEeeCCCcEEEEEccCC--eEEEEEeCCCCCceee
Q 040361 214 RVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVE--LDIVISGSKDGTCVFHTLREG--RYVRSLCHPSGSALSK 289 (413)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~--~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~~v~~ 289 (413)
+.......|...|++++|-|. |-.|++++.||.|.+.+.++. -....+...+...|++
T Consensus 93 ------------------~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~Gvns 154 (299)
T KOG1332|consen 93 ------------------TKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNS 154 (299)
T ss_pred ------------------hhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccce
Confidence 234556789999999999885 457899999999999988754 2233344444668999
Q ss_pred EEEccC---C-----------cEEEEECCCCeEEEEEeCCce---ee-eeecCCceeEEEecCCC----CEEEEeCCCCe
Q 040361 290 LAASRH---G-----------RIVLYGDDDLSLHLFSINGKH---LA-SSESNGRLNCLELSACG----QFLVCGGDQGQ 347 (413)
Q Consensus 290 ~~~~~~---~-----------~~l~~~~~d~~i~i~d~~~~~---~~-~~~~~~~i~~~~~s~~~----~~l~~~~~dg~ 347 (413)
++|.|. | +.|++|+.|..|++|+..... -. ...|...|+.++|.|.- .+|++++.||+
T Consensus 155 Vswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~ 234 (299)
T KOG1332|consen 155 VSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGT 234 (299)
T ss_pred eeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCc
Confidence 999985 4 569999999999999998521 11 24688999999999973 58999999999
Q ss_pred EEEEECCCC-c--eEEEecCCCCcEEEEEEccCCeEEE-EcCCCeEEEEEecC
Q 040361 348 IVVRSMNSL-E--VVRRYSGVGKIITSLAVTPEECFLA-GTKDGCLLVYSIEN 396 (413)
Q Consensus 348 i~v~d~~~~-~--~~~~~~~~~~~v~~~~~~~~~~~l~-~~~dg~i~vw~~~~ 396 (413)
|.||..... + ....++.....+..+.|+..|.+|+ ++.|+.|.+|.-..
T Consensus 235 viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 235 VIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred EEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 999977621 1 1122333567899999999999886 88999999998543
No 115
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.94 E-value=1.7e-25 Score=190.18 Aligned_cols=233 Identities=18% Similarity=0.281 Sum_probs=196.3
Q ss_pred ccCCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEE
Q 040361 91 TTQLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQ 170 (413)
Q Consensus 91 ~~~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~ 170 (413)
.|.+.|||+.|++|+.-.++.+|+.......+...+... .-.|.+++.+||.+..++|.+ ||.|.|||+.+..+++
T Consensus 470 SckL~pdgrtLivGGeastlsiWDLAapTprikaeltss---apaCyALa~spDakvcFsccs-dGnI~vwDLhnq~~Vr 545 (705)
T KOG0639|consen 470 SCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSS---APACYALAISPDAKVCFSCCS-DGNIAVWDLHNQTLVR 545 (705)
T ss_pred eeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCc---chhhhhhhcCCccceeeeecc-CCcEEEEEcccceeee
Confidence 456899999999999999999987655555444443333 457888899999998888776 9999999999999999
Q ss_pred EeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEe
Q 040361 171 SIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVS 250 (413)
Q Consensus 171 ~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~ 250 (413)
.+++|.+.+.||..++||..|.||+-|.+|+.||+++++.. .. ......|.++..+
T Consensus 546 qfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrql-----------------------qq-hdF~SQIfSLg~c 601 (705)
T KOG0639|consen 546 QFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQL-----------------------QQ-HDFSSQIFSLGYC 601 (705)
T ss_pred cccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhh-----------------------hh-hhhhhhheecccC
Confidence 99999999999999999999999999999999999988721 11 1234678999999
Q ss_pred cCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeC-CceeeeeecCCceeE
Q 040361 251 VELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSIN-GKHLASSESNGRLNC 329 (413)
Q Consensus 251 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~i~~ 329 (413)
|++.+++.|-+++.+.+-.... ...+.+..+ .+.|.++.|.+.|+++++.+.|..+..|.+. |..+........|.+
T Consensus 602 P~~dWlavGMens~vevlh~sk-p~kyqlhlh-eScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVls 679 (705)
T KOG0639|consen 602 PTGDWLAVGMENSNVEVLHTSK-PEKYQLHLH-ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLS 679 (705)
T ss_pred CCccceeeecccCcEEEEecCC-ccceeeccc-ccEEEEEEecccCceeeecCchhhhhhccCccccceeeccccCccee
Confidence 9999999999999988876533 333344333 5689999999999999999999999999987 777777788899999
Q ss_pred EEecCCCCEEEEeCCCCeEEEEEC
Q 040361 330 LELSACGQFLVCGGDQGQIVVRSM 353 (413)
Q Consensus 330 ~~~s~~~~~l~~~~~dg~i~v~d~ 353 (413)
+.+|.|.+|+++|+.|..-.||.+
T Consensus 680 CDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 680 CDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred eeeccCceEEEecCCCcceEEEEE
Confidence 999999999999999998888864
No 116
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=9.9e-27 Score=205.64 Aligned_cols=222 Identities=20% Similarity=0.281 Sum_probs=197.3
Q ss_pred CCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCC
Q 040361 145 ENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPR 224 (413)
Q Consensus 145 ~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 224 (413)
...++++|.+|..+.+|.+..-..+..+.+|..+|.++.|+++..+|++|+.+|+|++||++...
T Consensus 39 s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk--------------- 103 (825)
T KOG0267|consen 39 SSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK--------------- 103 (825)
T ss_pred cceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhh---------------
Confidence 34566667779999999998777777899999999999999999999999999999999999887
Q ss_pred CceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECC
Q 040361 225 KDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDD 304 (413)
Q Consensus 225 ~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 304 (413)
.++++.+|...+..+.|+|-+.++++|+.|+.+++||++...+.+.+..+ ...+..+.|+|+|++++.++.
T Consensus 104 --------~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~-~~vv~~l~lsP~Gr~v~~g~e 174 (825)
T KOG0267|consen 104 --------IVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSH-TRVVDVLRLSPDGRWVASGGE 174 (825)
T ss_pred --------hhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCC-cceeEEEeecCCCceeeccCC
Confidence 67889999999999999999999999999999999999988889888875 457899999999999999999
Q ss_pred CCeEEEEEeC-Cceeeee-ecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEccCCeEEE
Q 040361 305 DLSLHLFSIN-GKHLASS-ESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFLA 382 (413)
Q Consensus 305 d~~i~i~d~~-~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 382 (413)
|..+++||.. |+....+ .|.+.+..+.|+|..-+++.|+.|++|++||+++.+.+.........|.+.+|.|+++.+.
T Consensus 175 d~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~ 254 (825)
T KOG0267|consen 175 DNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVL 254 (825)
T ss_pred cceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeee
Confidence 9999999997 5555555 4889999999999999999999999999999999999988887788999999999998776
Q ss_pred EcCCCeEE
Q 040361 383 GTKDGCLL 390 (413)
Q Consensus 383 ~~~dg~i~ 390 (413)
++..-.+.
T Consensus 255 ~G~q~sl~ 262 (825)
T KOG0267|consen 255 SGEQISLS 262 (825)
T ss_pred cCchhhhh
Confidence 55444444
No 117
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.94 E-value=3.4e-23 Score=181.65 Aligned_cols=281 Identities=13% Similarity=0.124 Sum_probs=200.4
Q ss_pred eEEEEeecCCcEEEEecCceEEEEEee------ccCCCCCCcee-eecCCCCccccCCCcCCCcccCCCCcccceeccee
Q 040361 64 GIVYVGMLDSSIVLVNQGLTLSVKMWL------TTQLQSGGNFT-FSGSQDPFFGVGADILSPRNVGSPLAESFELGSQC 136 (413)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~s~~~~~l-~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (413)
.++.++..++.+.+|+.......+.+. ...++|+|..+ ++++.++.+.+|+.... .. ...+..+..+
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~--~~----~~~~~~~~~~ 75 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATG--EV----IGTLPSGPDP 75 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCC--cE----EEeccCCCCc
Confidence 355666778888888865444334332 23579999876 56778899988643211 11 1111122334
Q ss_pred EEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCC-cEEEEEecccccccccc
Q 040361 137 FTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDT-TVMVWEVIRARAPEKRV 215 (413)
Q Consensus 137 ~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg-~i~iw~~~~~~~~~~~~ 215 (413)
..+.++|+++.+++++..++.+++||+.+++.+..+.. ...+.+++|+|+++++++++.++ .+.+||..+..
T Consensus 76 ~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~------ 148 (300)
T TIGR03866 76 ELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYE------ 148 (300)
T ss_pred cEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCe------
Confidence 56788999998888777689999999998888777763 33468899999999999988775 46677876654
Q ss_pred ccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEE-EeeCCCcEEEEEccCCeEEEEEeCCC------CCcee
Q 040361 216 RNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVI-SGSKDGTCVFHTLREGRYVRSLCHPS------GSALS 288 (413)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~------~~~v~ 288 (413)
....+. ......+++|+++++.++ ++..++.|++||+++++.+..+.... .....
T Consensus 149 -----------------~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (300)
T TIGR03866 149 -----------------IVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPV 210 (300)
T ss_pred -----------------EEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCcc
Confidence 122222 223457789999999875 44569999999999998777664221 11235
Q ss_pred eEEEccCCcEEEEE-CCCCeEEEEEeCCcee-eeeecCCceeEEEecCCCCEEEEe-CCCCeEEEEECCCCceEEEecCC
Q 040361 289 KLAASRHGRIVLYG-DDDLSLHLFSINGKHL-ASSESNGRLNCLELSACGQFLVCG-GDQGQIVVRSMNSLEVVRRYSGV 365 (413)
Q Consensus 289 ~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~v~d~~~~~~~~~~~~~ 365 (413)
.++++|++++++++ ..++.+.+||++...+ ........+.+++|+|+|++|+++ ..+|.|++||+.+++.+.+++..
T Consensus 211 ~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~ 290 (300)
T TIGR03866 211 GIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG 290 (300)
T ss_pred ceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc
Confidence 68899999986554 5567899999984443 334456678999999999999886 46899999999999999999754
Q ss_pred CCcEEEEEEcc
Q 040361 366 GKIITSLAVTP 376 (413)
Q Consensus 366 ~~~v~~~~~~~ 376 (413)
...+.++++|
T Consensus 291 -~~~~~~~~~~ 300 (300)
T TIGR03866 291 -RLPWGVVVRP 300 (300)
T ss_pred -cccceeEeCC
Confidence 5568888875
No 118
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.8e-24 Score=173.62 Aligned_cols=268 Identities=14% Similarity=0.234 Sum_probs=200.6
Q ss_pred ccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEecc
Q 040361 128 ESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIR 207 (413)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~ 207 (413)
.++.+.. ..++.|++.|.++++ |+.||.|.|||+.+...-+.+.+|..+|++++|++||+.|+|+|.|..|.+||+..
T Consensus 19 ~tld~~~-a~~~~Fs~~G~~lAv-Gc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~ 96 (405)
T KOG1273|consen 19 HTLDNPL-AECCQFSRWGDYLAV-GCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLK 96 (405)
T ss_pred eeccCCc-cceEEeccCcceeee-eccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccC
Confidence 3344333 677889999988877 77799999999999998889999999999999999999999999999999999998
Q ss_pred ccccccc-cc----cceeecC-CCceee-----------ecCceeeeecCC------CCeEEEEEecCCCEEEEeeCCCc
Q 040361 208 ARAPEKR-VR----NMQIEAP-RKDYVI-----------VETPFHILCGHD------DIITCLYVSVELDIVISGSKDGT 264 (413)
Q Consensus 208 ~~~~~~~-~~----~~~~~~~-~~~~~~-----------~~~~~~~~~~h~------~~i~~~~~~~~~~~l~s~~~dg~ 264 (413)
+....+. +. ..+..+. .+..++ ...+.+.+-... ..-.+..|.+.|+++++|...|.
T Consensus 97 gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGk 176 (405)
T KOG1273|consen 97 GSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGK 176 (405)
T ss_pred CCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcce
Confidence 8732210 00 0000000 111111 011111111110 11123347888999999999999
Q ss_pred EEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCC-----c--eeee------eecCCceeEEE
Q 040361 265 CVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSING-----K--HLAS------SESNGRLNCLE 331 (413)
Q Consensus 265 i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~-----~--~~~~------~~~~~~i~~~~ 331 (413)
+.++|..+.+++..++...-..|..+.++..|..++.-+.|..|+.|+++. + .+.. .-...+-.+++
T Consensus 177 llv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~cc 256 (405)
T KOG1273|consen 177 LLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCC 256 (405)
T ss_pred EEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhhee
Confidence 999999999999988765546789999999999999999999999999861 1 1110 01233567889
Q ss_pred ecCCCCEEEEeCC-CCeEEEEECCCCceEEEecCCC-CcEEEEEEccCCeEEEEcCCCeEEEEEecCC
Q 040361 332 LSACGQFLVCGGD-QGQIVVRSMNSLEVVRRYSGVG-KIITSLAVTPEECFLAGTKDGCLLVYSIENR 397 (413)
Q Consensus 332 ~s~~~~~l~~~~~-dg~i~v~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~dg~i~vw~~~~~ 397 (413)
|+.+|.|++.|+. -..++||.-..|.+++.+.|.. .....+.|+|-..+++.-..|.+++|.....
T Consensus 257 fs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 257 FSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASIASGVVYIWAVVQV 324 (405)
T ss_pred ecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeeccCCceEEEEeecc
Confidence 9999999988874 4579999999999999998877 5678899999987777668899999998654
No 119
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.94 E-value=2.8e-24 Score=171.00 Aligned_cols=279 Identities=18% Similarity=0.211 Sum_probs=205.4
Q ss_pred CceeeecCCCCccccCCCcCCCc-ccCCCC---------cccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCc
Q 040361 98 GNFTFSGSQDPFFGVGADILSPR-NVGSPL---------AESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGR 167 (413)
Q Consensus 98 ~~~l~~~~~d~~~~~~~~~~~~~-~~~~~~---------~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~ 167 (413)
|+++++|+.||.+.+|+.+-... ...... ...-.|.-.+.++.|.|-+.-++.+++.|.++++||.++-+
T Consensus 56 grymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ 135 (397)
T KOG4283|consen 56 GRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQ 135 (397)
T ss_pred ceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccce
Confidence 56666777777766654211110 000111 11122344577889999999999999999999999999988
Q ss_pred EEEEeecCCCeEEEEEECCC---CCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCe
Q 040361 168 VVQSIRQHRDVVSCVAVTTD---GSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDII 244 (413)
Q Consensus 168 ~~~~~~~h~~~v~~~~~~~~---~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i 244 (413)
....++ -.+.|..-+++|- ..++++|..|-.|++-|+..+. ..+++.+|.+.|
T Consensus 136 ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs-----------------------~sH~LsGHr~~v 191 (397)
T KOG4283|consen 136 EAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS-----------------------FSHTLSGHRDGV 191 (397)
T ss_pred eeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCc-----------------------ceeeeccccCce
Confidence 887776 5678888889883 4578888899999999999988 688999999999
Q ss_pred EEEEEecCCCE-EEEeeCCCcEEEEEccCC-eEEEEEeCC-------------CCCceeeEEEccCCcEEEEECCCCeEE
Q 040361 245 TCLYVSVELDI-VISGSKDGTCVFHTLREG-RYVRSLCHP-------------SGSALSKLAASRHGRIVLYGDDDLSLH 309 (413)
Q Consensus 245 ~~~~~~~~~~~-l~s~~~dg~i~vwd~~~~-~~~~~~~~~-------------~~~~v~~~~~~~~~~~l~~~~~d~~i~ 309 (413)
.++.|+|...+ |++|+.||.|++||++.. .+.+.+..+ +...+..++|..++.++++.+.|..++
T Consensus 192 laV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r 271 (397)
T KOG4283|consen 192 LAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIR 271 (397)
T ss_pred EEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceE
Confidence 99999998774 679999999999999864 344444322 235688999999999999999999999
Q ss_pred EEEeC-Ccee-eee---ecC---CceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEccC-CeE
Q 040361 310 LFSIN-GKHL-ASS---ESN---GRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPE-ECF 380 (413)
Q Consensus 310 i~d~~-~~~~-~~~---~~~---~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~-~~~ 380 (413)
+|+.. |... ... .++ +.-..+. +-+...++.--.++.+.++++-++..+..+..|...|.+.++.|+ ...
T Consensus 272 ~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~ 350 (397)
T KOG4283|consen 272 VWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQC 350 (397)
T ss_pred EeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhh
Confidence 99987 3211 111 111 1111122 223333443344589999999999999999999999999999999 677
Q ss_pred EEEcCCCeEEEEEecCCccccc
Q 040361 381 LAGTKDGCLLVYSIENRRTSLP 402 (413)
Q Consensus 381 l~~~~dg~i~vw~~~~~~~~~~ 402 (413)
.+|..|+.|..|-. ..+.+.+
T Consensus 351 ~tg~~d~ni~~w~p-~l~~pt~ 371 (397)
T KOG4283|consen 351 FTGDMNGNIYMWSP-ALKSPTK 371 (397)
T ss_pred hccccCCccccccc-cccCCcc
Confidence 89999999999988 4444433
No 120
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.94 E-value=6.7e-23 Score=174.49 Aligned_cols=264 Identities=19% Similarity=0.310 Sum_probs=204.0
Q ss_pred CCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEE---EeecC-CCeEE
Q 040361 105 SQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQ---SIRQH-RDVVS 180 (413)
Q Consensus 105 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~---~~~~h-~~~v~ 180 (413)
+.+..+.+|+ |.......+.... ...++.+.|.|.+..++++.. .+.+..|+...+...+ .++.+ ...|.
T Consensus 177 s~~h~lSVWd--Wqk~~~~~~vk~s---ne~v~~a~FHPtd~nliit~G-k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl 250 (626)
T KOG2106|consen 177 SNPHMLSVWD--WQKKAKLGPVKTS---NEVVFLATFHPTDPNLIITCG-KGHLYFWTLRGGSLVKRQGIFEKREKKFVL 250 (626)
T ss_pred CCccccchhh--chhhhccCcceec---cceEEEEEeccCCCcEEEEeC-CceEEEEEccCCceEEEeeccccccceEEE
Confidence 4556688875 5544333333333 566788999999988877665 8999999998876654 33432 37899
Q ss_pred EEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEee
Q 040361 181 CVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGS 260 (413)
Q Consensus 181 ~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~ 260 (413)
|++|.++|. ++||..+|.|.||+..+.+ ..+....|.+.|.+++...+|. |++|+
T Consensus 251 ~v~F~engd-viTgDS~G~i~Iw~~~~~~-----------------------~~k~~~aH~ggv~~L~~lr~Gt-llSGg 305 (626)
T KOG2106|consen 251 CVTFLENGD-VITGDSGGNILIWSKGTNR-----------------------ISKQVHAHDGGVFSLCMLRDGT-LLSGG 305 (626)
T ss_pred EEEEcCCCC-EEeecCCceEEEEeCCCce-----------------------EEeEeeecCCceEEEEEecCcc-EeecC
Confidence 999999886 7799999999999997665 3444459999999999998886 45599
Q ss_pred CCCcEEEEEccCCeEEEEEe----------------------------------------CCCCCceeeEEEccCCcEEE
Q 040361 261 KDGTCVFHTLREGRYVRSLC----------------------------------------HPSGSALSKLAASRHGRIVL 300 (413)
Q Consensus 261 ~dg~i~vwd~~~~~~~~~~~----------------------------------------~~~~~~v~~~~~~~~~~~l~ 300 (413)
.|..|..||- .-+.++..+ ..++.....++.+|+.+.++
T Consensus 306 KDRki~~Wd~-~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~ 384 (626)
T KOG2106|consen 306 KDRKIILWDD-NYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLL 384 (626)
T ss_pred ccceEEeccc-cccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhhee
Confidence 9999999983 211111110 01233567788999999999
Q ss_pred EECCCCeEEEEEeCCceeeeeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEccCCeE
Q 040361 301 YGDDDLSLHLFSINGKHLASSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECF 380 (413)
Q Consensus 301 ~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 380 (413)
+++.|+.+++|+ +.+.........+..|+.|+|.| .++.|...|...+.|.++...+..-. ...+++.++|+|+|.+
T Consensus 385 T~gqdk~v~lW~-~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~-d~~~ls~v~ysp~G~~ 461 (626)
T KOG2106|consen 385 TCGQDKHVRLWN-DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT-DNEQLSVVRYSPDGAF 461 (626)
T ss_pred eccCcceEEEcc-CCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEe-cCCceEEEEEcCCCCE
Confidence 999999999999 54555556678899999999999 99999999999999999965555444 4889999999999988
Q ss_pred EE-EcCCCeEEEEEecCCcccccc
Q 040361 381 LA-GTKDGCLLVYSIENRRTSLPR 403 (413)
Q Consensus 381 l~-~~~dg~i~vw~~~~~~~~~~~ 403 (413)
+| |+.|+.|++|.+........+
T Consensus 462 lAvgs~d~~iyiy~Vs~~g~~y~r 485 (626)
T KOG2106|consen 462 LAVGSHDNHIYIYRVSANGRKYSR 485 (626)
T ss_pred EEEecCCCeEEEEEECCCCcEEEE
Confidence 86 999999999999887766654
No 121
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=7.4e-25 Score=184.12 Aligned_cols=240 Identities=13% Similarity=0.179 Sum_probs=186.0
Q ss_pred CCCCC-ceeeecCCCCccccCCCcCCCcccC-----CCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCc
Q 040361 94 LQSGG-NFTFSGSQDPFFGVGADILSPRNVG-----SPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGR 167 (413)
Q Consensus 94 ~s~~~-~~l~~~~~d~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~ 167 (413)
+-|+. ..+++++..+.+-+|+.+-.+.... .+.....+|..+...++|++.....+++|+.|+.|.+||++...
T Consensus 132 ymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~ 211 (422)
T KOG0264|consen 132 YMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAES 211 (422)
T ss_pred hCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccc
Confidence 44555 4456777778888876443332221 22234445566688899999988888888889999999996432
Q ss_pred -------EEEEeecCCCeEEEEEECC-CCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeec
Q 040361 168 -------VVQSIRQHRDVVSCVAVTT-DGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCG 239 (413)
Q Consensus 168 -------~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (413)
....+.+|.+.|..++|++ +...+++++.|+.+.|||+++... .+.....+
T Consensus 212 ~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~---------------------~~~~~~~a 270 (422)
T KOG0264|consen 212 KEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTS---------------------KPSHSVKA 270 (422)
T ss_pred cCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCC---------------------CCcccccc
Confidence 3467789999999999999 567889999999999999996311 15667789
Q ss_pred CCCCeEEEEEec-CCCEEEEeeCCCcEEEEEccCCe-EEEEEeCCCCCceeeEEEccC-CcEEEEECCCCeEEEEEeC--
Q 040361 240 HDDIITCLYVSV-ELDIVISGSKDGTCVFHTLREGR-YVRSLCHPSGSALSKLAASRH-GRIVLYGDDDLSLHLFSIN-- 314 (413)
Q Consensus 240 h~~~i~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~-- 314 (413)
|.+.|.|++|+| ++..||+|+.|++|.+||+|+.. ++.++..| ...|..+.|+|. ...|++++.|+.+.+||+.
T Consensus 271 h~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H-~dev~~V~WSPh~etvLASSg~D~rl~vWDls~i 349 (422)
T KOG0264|consen 271 HSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGH-EDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRI 349 (422)
T ss_pred cCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCC-CcceEEEEeCCCCCceeEecccCCcEEEEecccc
Confidence 999999999999 55688999999999999999765 46666665 568999999996 5678888999999999996
Q ss_pred Cce--------------eeeeecCCceeEEEecCCCCE-EEEeCCCCeEEEEECCC
Q 040361 315 GKH--------------LASSESNGRLNCLELSACGQF-LVCGGDQGQIVVRSMNS 355 (413)
Q Consensus 315 ~~~--------------~~~~~~~~~i~~~~~s~~~~~-l~~~~~dg~i~v~d~~~ 355 (413)
+.. ....+|...|..+.|+|+..+ |++.++|+.+.||++..
T Consensus 350 g~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 350 GEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred ccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 322 223468889999999999865 66778999999998763
No 122
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.5e-24 Score=172.77 Aligned_cols=234 Identities=19% Similarity=0.314 Sum_probs=190.3
Q ss_pred EEeecCCCeEEEEEcCCC------------cEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccc
Q 040361 149 ITCGNWENSFQVIALNDG------------RVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVR 216 (413)
Q Consensus 149 ~~~g~~d~~i~i~~~~~~------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~ 216 (413)
+++|++...|.-+++.-. .++..+..|.+.|++++. ++.++++||.|-+|+|||+....
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~------- 74 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRK------- 74 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchh-------
Confidence 344766777776665321 124456789999999999 58999999999999999998877
Q ss_pred cceeecCCCceeeecCceeeeecCCCCeEEEEEecCCC--EEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEcc
Q 040361 217 NMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELD--IVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASR 294 (413)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~ 294 (413)
.+..+-.|.+.|+++.|.++.. .|++|+.||.|.+|+......+.+++.|.+ .|+.++++|
T Consensus 75 ----------------qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~-~Vt~lsiHP 137 (362)
T KOG0294|consen 75 ----------------QLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKG-QVTDLSIHP 137 (362)
T ss_pred ----------------hhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeeccccc-ccceeEecC
Confidence 5777888999999999998765 899999999999999999999999998865 599999999
Q ss_pred CCcEEEEECCCCeEEEEEeC-CceeeeeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEE
Q 040361 295 HGRIVLYGDDDLSLHLFSIN-GKHLASSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLA 373 (413)
Q Consensus 295 ~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~ 373 (413)
.+++.++.+.|+.++.||+- |+.-.........+.+.|+|.|.+++.+..+ .|-+|.+.+......+.. ...+.++.
T Consensus 138 S~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~-~~r~l~~~ 215 (362)
T KOG0294|consen 138 SGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIEN-PKRILCAT 215 (362)
T ss_pred CCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhc-cccceeee
Confidence 99999999999999999985 5444444445555669999999988888766 689999998877776653 35688888
Q ss_pred EccCCeEEEEcCCCeEEEEEecCCcccccccccccCCc
Q 040361 374 VTPEECFLAGTKDGCLLVYSIENRRTSLPRNVKSKASI 411 (413)
Q Consensus 374 ~~~~~~~l~~~~dg~i~vw~~~~~~~~~~~~~~~~~~i 411 (413)
|...+.+++|++|+.|.+||.++.... ..-+.|..+|
T Consensus 216 ~l~~~~L~vG~d~~~i~~~D~ds~~~~-~~~~AH~~RV 252 (362)
T KOG0294|consen 216 FLDGSELLVGGDNEWISLKDTDSDTPL-TEFLAHENRV 252 (362)
T ss_pred ecCCceEEEecCCceEEEeccCCCccc-eeeecchhhe
Confidence 987788889999999999999885443 3344565554
No 123
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=5.8e-26 Score=185.37 Aligned_cols=277 Identities=16% Similarity=0.191 Sum_probs=204.2
Q ss_pred ccEEEEEecCCCCCC-eEEEEeecCCcEEEEecCceEEEEEeeccC-----CCCCCceeeecCCCCccccCCCcCCCccc
Q 040361 49 INLTSIICSTRHQPS-GIVYVGMLDSSIVLVNQGLTLSVKMWLTTQ-----LQSGGNFTFSGSQDPFFGVGADILSPRNV 122 (413)
Q Consensus 49 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~s~~~~~l~~~~~d~~~~~~~~~~~~~~~ 122 (413)
-..+.+.+.+-+|+. ..++.|+.||.+.+|+...-...+.+.+.. +.-+...++++++|.+++.|..+.+
T Consensus 64 gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~~---- 139 (433)
T KOG0268|consen 64 GHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKIDGP---- 139 (433)
T ss_pred ccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeeccCC----
Confidence 344567777778876 668888999999999976543333332211 1222267899999999999753332
Q ss_pred CCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCC-CCEEEEccCCCcEE
Q 040361 123 GSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTD-GSILATGSYDTTVM 201 (413)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~dg~i~ 201 (413)
....+-.......+.....++.++.+| ..|.|||.+...++..+.--.+.|.++.|+|. ...|++|+.|++|.
T Consensus 140 ---p~~tilg~s~~~gIdh~~~~~~FaTcG---e~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIv 213 (433)
T KOG0268|consen 140 ---PLHTILGKSVYLGIDHHRKNSVFATCG---EQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIV 213 (433)
T ss_pred ---cceeeeccccccccccccccccccccC---ceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceE
Confidence 222333334444444444455555544 47999999999999999988899999999995 45677888999999
Q ss_pred EEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeC
Q 040361 202 VWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCH 281 (413)
Q Consensus 202 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 281 (413)
+||+++.. ++..+. -...-+.++|+|++-.+++|++|..++.+|++..........
T Consensus 214 LyD~R~~~-----------------------Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~ 269 (433)
T KOG0268|consen 214 LYDLRQAS-----------------------PLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHK 269 (433)
T ss_pred EEecccCC-----------------------ccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhc
Confidence 99999887 333222 223346789999888899999999999999987654433333
Q ss_pred CCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCceeee---eecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCce
Q 040361 282 PSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKHLAS---SESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEV 358 (413)
Q Consensus 282 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~---~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~ 358 (413)
.+.+.|.++.|+|.|+-+++|+.|.+|+||..+...-.. ......|.|+.||.|.+|+++|++|+.|++|.....+.
T Consensus 270 dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asek 349 (433)
T KOG0268|consen 270 DHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEK 349 (433)
T ss_pred ccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhh
Confidence 446799999999999999999999999999998433222 23446799999999999999999999999998765443
Q ss_pred E
Q 040361 359 V 359 (413)
Q Consensus 359 ~ 359 (413)
+
T Consensus 350 l 350 (433)
T KOG0268|consen 350 L 350 (433)
T ss_pred c
Confidence 3
No 124
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.8e-25 Score=199.15 Aligned_cols=254 Identities=17% Similarity=0.233 Sum_probs=189.8
Q ss_pred eEEEEecCCCCEEEEeecCCCeEEEEEcCCCc----EEEEeecC---CCeEEEEEECC-CCCEEEEccCCCcEEEEEecc
Q 040361 136 CFTTMQTPSENFLITCGNWENSFQVIALNDGR----VVQSIRQH---RDVVSCVAVTT-DGSILATGSYDTTVMVWEVIR 207 (413)
Q Consensus 136 ~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~----~~~~~~~h---~~~v~~~~~~~-~~~~l~s~s~dg~i~iw~~~~ 207 (413)
..++...++-..++.+| ...+.||.++... +...+... .-.+..|.|.. +.++|+|++..|.|.+||+..
T Consensus 42 ~nAIs~nr~~~qiv~AG--rs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk 119 (839)
T KOG0269|consen 42 ANAISVNRDINQIVVAG--RSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNK 119 (839)
T ss_pred cceEeecCCcceeEEec--ccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCc
Confidence 33444467777788777 5678888775432 11111111 12455677764 578999999999999999976
Q ss_pred ccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecC-CCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCc
Q 040361 208 ARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVE-LDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSA 286 (413)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 286 (413)
... +..+..+..|+..++++.|++- .++|++|++||+|++||++..+...++... ...
T Consensus 120 ~~r--------------------nk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~n-SES 178 (839)
T KOG0269|consen 120 SIR--------------------NKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSN-SES 178 (839)
T ss_pred ccc--------------------chhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccccccc-chh
Confidence 310 0146678999999999999984 468999999999999999998888877764 457
Q ss_pred eeeEEEcc-CCcEEEEECCCCeEEEEEeCCce---eeeeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCce--EE
Q 040361 287 LSKLAASR-HGRIVLYGDDDLSLHLFSINGKH---LASSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEV--VR 360 (413)
Q Consensus 287 v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~--~~ 360 (413)
|+.+.|+| .+..++++...|.+.+||++... .....|.++|.|+.|+|++.+||+|+.|+.|+|||+.+.+. +.
T Consensus 179 iRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~ 258 (839)
T KOG0269|consen 179 IRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKH 258 (839)
T ss_pred hhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCcccee
Confidence 99999999 57889999999999999998322 23357999999999999999999999999999999986543 34
Q ss_pred EecCCCCcEEEEEEccCC-eEE-EEc--CCCeEEEEEecCCcccccccccccCCcCC
Q 040361 361 RYSGVGKIITSLAVTPEE-CFL-AGT--KDGCLLVYSIENRRTSLPRNVKSKASITG 413 (413)
Q Consensus 361 ~~~~~~~~v~~~~~~~~~-~~l-~~~--~dg~i~vw~~~~~~~~~~~~~~~~~~i~g 413 (413)
++. ...+|.++.|-|+. ..| +++ .|-.|+|||++.+=-+...-..|...++|
T Consensus 259 tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~ 314 (839)
T KOG0269|consen 259 TIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTG 314 (839)
T ss_pred EEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccc
Confidence 443 35789999999994 344 333 68899999998654443333455555543
No 125
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.5e-24 Score=181.15 Aligned_cols=277 Identities=12% Similarity=0.171 Sum_probs=216.1
Q ss_pred ccCCCCCCceeeecCCCCccccCCCcCCCcccCCCCccccee-cceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEE
Q 040361 91 TTQLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFEL-GSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVV 169 (413)
Q Consensus 91 ~~~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~ 169 (413)
..+|.|....+.+++.|+.++++...-.. .+..+.+.+ ..++.++.|.|+|...+++++....++.||+.+.+..
T Consensus 218 sv~FHp~~plllvaG~d~~lrifqvDGk~----N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~ 293 (514)
T KOG2055|consen 218 SVQFHPTAPLLLVAGLDGTLRIFQVDGKV----NPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVT 293 (514)
T ss_pred EEEecCCCceEEEecCCCcEEEEEecCcc----ChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccc
Confidence 34689999999999999999997532222 223333333 4567788899999956655666889999999987765
Q ss_pred E--EeecCC-CeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEE
Q 040361 170 Q--SIRQHR-DVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITC 246 (413)
Q Consensus 170 ~--~~~~h~-~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 246 (413)
+ ...++. ..+.....++++++|+..+..|.|.+....+++ .+..++ -.+.|..
T Consensus 294 k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~e-----------------------li~s~K-ieG~v~~ 349 (514)
T KOG2055|consen 294 KLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKE-----------------------LITSFK-IEGVVSD 349 (514)
T ss_pred cccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhh-----------------------hhheee-eccEEee
Confidence 3 333443 456778889999999999999999999988876 344443 5678999
Q ss_pred EEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCcee-------e
Q 040361 247 LYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKHL-------A 319 (413)
Q Consensus 247 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-------~ 319 (413)
++|+.+++.|++++.+|.|.+||++...+++.+.......-++++.++++.++++|+..|.|.|||.+.... .
T Consensus 350 ~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik 429 (514)
T KOG2055|consen 350 FTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIK 429 (514)
T ss_pred EEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchh
Confidence 999999999999999999999999999999998765444557788889999999999999999999763221 1
Q ss_pred e-eecCCceeEEEecCCCCEEEEeCC--CCeEEEEECCCCceEEEecCC---CCcEEEEEEccCCeEE-EEcCCCeEEEE
Q 040361 320 S-SESNGRLNCLELSACGQFLVCGGD--QGQIVVRSMNSLEVVRRYSGV---GKIITSLAVTPEECFL-AGTKDGCLLVY 392 (413)
Q Consensus 320 ~-~~~~~~i~~~~~s~~~~~l~~~~~--dg~i~v~d~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l-~~~~dg~i~vw 392 (413)
. ......|+.++|++|.+.|+.++. +..+++-.+.+......++.. -+.|+|++|+|.+-++ .|..+|.+.+|
T Consensus 430 ~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~ 509 (514)
T KOG2055|consen 430 TVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLF 509 (514)
T ss_pred hhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeE
Confidence 1 134567999999999999988874 568999888887766666533 3569999999985555 59999999999
Q ss_pred Eec
Q 040361 393 SIE 395 (413)
Q Consensus 393 ~~~ 395 (413)
.+.
T Consensus 510 kL~ 512 (514)
T KOG2055|consen 510 KLH 512 (514)
T ss_pred eec
Confidence 975
No 126
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.94 E-value=1.1e-24 Score=185.06 Aligned_cols=289 Identities=13% Similarity=0.169 Sum_probs=212.3
Q ss_pred EEeecCCcEEEEecCceEEEEEeeccC---------CCCCC-ceeeecCCCCccccCCCcCCCcccCCCCcccceeccee
Q 040361 67 YVGMLDSSIVLVNQGLTLSVKMWLTTQ---------LQSGG-NFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQC 136 (413)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~s~~~-~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (413)
.+.+....+.+|+.+.......+.... ++... -.+++.+.|..+++|...-. .-..+...... ....
T Consensus 6 ~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~--~~~Vp~~~k~~-gd~~ 82 (673)
T KOG4378|consen 6 HVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGK--TPEVPRVRKLT-GDNA 82 (673)
T ss_pred eeeccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCC--CCccceeeccc-cchH
Confidence 334555677888877665544443332 22222 22455667888888632111 11112222222 1233
Q ss_pred EEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccc
Q 040361 137 FTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVR 216 (413)
Q Consensus 137 ~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~ 216 (413)
.++.......++++ |...+.|+|||+....+.+.+++|...|+++.+.-...+|++++..|.|.+..+.++.
T Consensus 83 ~Cv~~~s~S~y~~s-gG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~------- 154 (673)
T KOG4378|consen 83 FCVACASQSLYEIS-GGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQ------- 154 (673)
T ss_pred HHHhhhhcceeeec-cCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCc-------
Confidence 33333444566666 5559999999999777888999999999999999999999999999999999998876
Q ss_pred cceeecCCCceeeecCceeeeecC-CCCeEEEEEecCCC-EEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEcc
Q 040361 217 NMQIEAPRKDYVIVETPFHILCGH-DDIITCLYVSVELD-IVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASR 294 (413)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~h-~~~i~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~ 294 (413)
....+... ...|.-+.|++..+ +|.+++.+|.|.+||.....++..+...+..+...++|+|
T Consensus 155 ----------------~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfsp 218 (673)
T KOG4378|consen 155 ----------------KTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSP 218 (673)
T ss_pred ----------------cccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecC
Confidence 22233322 23456889998665 5678999999999999888888887766677899999999
Q ss_pred C-CcEEEEECCCCeEEEEEeCCceee-eeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCC-CceEEEecCCCCcEEE
Q 040361 295 H-GRIVLYGDDDLSLHLFSINGKHLA-SSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNS-LEVVRRYSGVGKIITS 371 (413)
Q Consensus 295 ~-~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~v~~ 371 (413)
. ..+|++.+.|..|.+||...+... ......+...++|+++|.+|+.|...|.|..||++. ..++..+..|...|++
T Consensus 219 sne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~ 298 (673)
T KOG4378|consen 219 SNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTR 298 (673)
T ss_pred CccceEEEecccceEEEeecccccccceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeE
Confidence 4 567888999999999999855443 456788999999999999999999999999999996 4578888899999999
Q ss_pred EEEccCCeEEE
Q 040361 372 LAVTPEECFLA 382 (413)
Q Consensus 372 ~~~~~~~~~l~ 382 (413)
++|-|.-.+++
T Consensus 299 vafq~s~tvlt 309 (673)
T KOG4378|consen 299 VAFQPSPTVLT 309 (673)
T ss_pred EEeeecceeee
Confidence 99988754443
No 127
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.93 E-value=1.4e-24 Score=185.01 Aligned_cols=268 Identities=15% Similarity=0.147 Sum_probs=191.3
Q ss_pred EEEEeecCCcEEEEecCceEEEEEeec-----------------------cCCCCCCceeeecCCCCccccCCCc---C-
Q 040361 65 IVYVGMLDSSIVLVNQGLTLSVKMWLT-----------------------TQLQSGGNFTFSGSQDPFFGVGADI---L- 117 (413)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~s~~~~~l~~~~~d~~~~~~~~~---~- 117 (413)
+...+.......+++.+.+-.+++|+. .+||+.|..++..+.....++.+.. |
T Consensus 170 Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~ 249 (641)
T KOG0772|consen 170 VSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIV 249 (641)
T ss_pred EEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceee
Confidence 333444445555555555555555532 2589999877766666666665421 1
Q ss_pred ---CCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCc-EEEEee-----cCCCeEEEEEECCCC
Q 040361 118 ---SPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGR-VVQSIR-----QHRDVVSCVAVTTDG 188 (413)
Q Consensus 118 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~-~~~~~~-----~h~~~v~~~~~~~~~ 188 (413)
.......-+....+|...+.+.+|.|..+..+.+++.||+++|||+++.+ ..+.+. +..-.++.++|++|+
T Consensus 250 e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg 329 (641)
T KOG0772|consen 250 EFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDG 329 (641)
T ss_pred eeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCc
Confidence 11112223444556777888999999998888878889999999997644 233332 234578999999999
Q ss_pred CEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCC--CeEEEEEecCCCEEEEeeCCCcEE
Q 040361 189 SILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDD--IITCLYVSVELDIVISGSKDGTCV 266 (413)
Q Consensus 189 ~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~i~~~~~~~~~~~l~s~~~dg~i~ 266 (413)
+.||+|..||+|.+|+...... ......-..|.. .|+|+.|+++|++|++-+.|++++
T Consensus 330 ~~iAagc~DGSIQ~W~~~~~~v--------------------~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLK 389 (641)
T KOG0772|consen 330 KLIAAGCLDGSIQIWDKGSRTV--------------------RPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLK 389 (641)
T ss_pred chhhhcccCCceeeeecCCccc--------------------ccceEeeeccCCCCceeEEEeccccchhhhccCCCcee
Confidence 9999999999999999743321 012344567877 899999999999999999999999
Q ss_pred EEEccCCeE-EEEEe-CCCCCceeeEEEccCCcEEEEECC------CCeEEEEEeCCceee-e-eecCCceeEEEecCCC
Q 040361 267 FHTLREGRY-VRSLC-HPSGSALSKLAASRHGRIVLYGDD------DLSLHLFSINGKHLA-S-SESNGRLNCLELSACG 336 (413)
Q Consensus 267 vwd~~~~~~-~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~i~d~~~~~~~-~-~~~~~~i~~~~~s~~~ 336 (413)
+||+++.+. +.... .+...+-+.++|+|+.++|++|.. .|.+.+||...-... . .-....|..+.|+|.=
T Consensus 390 vWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkL 469 (641)
T KOG0772|consen 390 VWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKL 469 (641)
T ss_pred eeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchh
Confidence 999987653 33322 223345678899999999999864 568999998743332 2 2346778889999999
Q ss_pred CEEEEeCCCCeEEEEE
Q 040361 337 QFLVCGGDQGQIVVRS 352 (413)
Q Consensus 337 ~~l~~~~~dg~i~v~d 352 (413)
+.|++|+.||.++||-
T Consensus 470 NQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 470 NQIFAGSGDGTAHVYY 485 (641)
T ss_pred hheeeecCCCceEEEE
Confidence 9999999999999873
No 128
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=1.2e-26 Score=205.24 Aligned_cols=216 Identities=20% Similarity=0.367 Sum_probs=190.1
Q ss_pred ecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeec
Q 040361 152 GNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVE 231 (413)
Q Consensus 152 g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (413)
+..+-.+++|+.. .+..|...|.++..-..++.+++|+.|..+-+|.+....
T Consensus 10 ~~~~t~Lr~~~~~------~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~---------------------- 61 (825)
T KOG0267|consen 10 TKRATKLRVWDTR------EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPN---------------------- 61 (825)
T ss_pred eeeeeccccccch------hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCc----------------------
Confidence 3335567778753 344688999999887788999999999999999987665
Q ss_pred CceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEE
Q 040361 232 TPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLF 311 (413)
Q Consensus 232 ~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~ 311 (413)
.+..+.+|+.+|.++.|+++..+|++|+.+|+|++||++.++.++++.++. ..+.++.|+|-+.+.+.|+.|..+++|
T Consensus 62 -~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~-~~~~sv~f~P~~~~~a~gStdtd~~iw 139 (825)
T KOG0267|consen 62 -AITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHL-LNITSVDFHPYGEFFASGSTDTDLKIW 139 (825)
T ss_pred -hhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccc-cCcceeeeccceEEeccccccccceeh
Confidence 566789999999999999999999999999999999999999999998774 578899999999999999999999999
Q ss_pred EeC-Cceeee-eecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEccCCeEEE-EcCCCe
Q 040361 312 SIN-GKHLAS-SESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFLA-GTKDGC 388 (413)
Q Consensus 312 d~~-~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~dg~ 388 (413)
|.+ ...... ..|...+.++.|+|+|++++.|++|..++|||+..|+.+.+|+.|++.+.++.|+|...+++ |+.|++
T Consensus 140 D~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~t 219 (825)
T KOG0267|consen 140 DIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRT 219 (825)
T ss_pred hhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCce
Confidence 998 333333 45778899999999999999999999999999999999999999999999999999987776 999999
Q ss_pred EEEEEecCC
Q 040361 389 LLVYSIENR 397 (413)
Q Consensus 389 i~vw~~~~~ 397 (413)
+++||+++-
T Consensus 220 v~f~dletf 228 (825)
T KOG0267|consen 220 VRFWDLETF 228 (825)
T ss_pred eeeecccee
Confidence 999999963
No 129
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=5.5e-24 Score=193.31 Aligned_cols=238 Identities=18% Similarity=0.227 Sum_probs=199.4
Q ss_pred cceeEEEEecCCCCEEEEeecCCCeEEEEEcCCC-cEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEecccccc
Q 040361 133 GSQCFTTMQTPSENFLITCGNWENSFQVIALNDG-RVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAP 211 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~ 211 (413)
...-..++|.|+|+++++||+ ||.|++|+.... +....+..+...|.+++. ++.+|++|+.+++|.+|.+..+.
T Consensus 13 t~G~t~i~~d~~gefi~tcgs-dg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~-- 87 (933)
T KOG1274|consen 13 TGGLTLICYDPDGEFICTCGS-DGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGE-- 87 (933)
T ss_pred cCceEEEEEcCCCCEEEEecC-CCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCCC--
Confidence 344567889999999888887 999999998665 444555558888888877 45699999999999999998887
Q ss_pred ccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEE
Q 040361 212 EKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLA 291 (413)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~ 291 (413)
.-..+...+-++.+++|+.+|++++.|+.|-.|++-++........+..+ ..+|.++.
T Consensus 88 ---------------------~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh-~apVl~l~ 145 (933)
T KOG1274|consen 88 ---------------------EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGH-DAPVLQLS 145 (933)
T ss_pred ---------------------ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeeccc-CCceeeee
Confidence 33455566788999999999999999999999999999998888888877 46999999
Q ss_pred EccCCcEEEEECCCCeEEEEEeCCceeee-e---------ecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEE
Q 040361 292 ASRHGRIVLYGDDDLSLHLFSINGKHLAS-S---------ESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRR 361 (413)
Q Consensus 292 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~---------~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~ 361 (413)
++|++++|++.+.||.|++||+....+.. . .....+..++|+|+|..+++...|+.|++|+..+++....
T Consensus 146 ~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~ 225 (933)
T KOG1274|consen 146 YDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFK 225 (933)
T ss_pred EcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceehee
Confidence 99999999999999999999998544332 1 1234567899999988888888999999999999988877
Q ss_pred ecC--CCCcEEEEEEccCCeEEE-EcCCCeEEEEEecCC
Q 040361 362 YSG--VGKIITSLAVTPEECFLA-GTKDGCLLVYSIENR 397 (413)
Q Consensus 362 ~~~--~~~~v~~~~~~~~~~~l~-~~~dg~i~vw~~~~~ 397 (413)
+.. +...+..+.|+|+|+|+| ++.||.|.|||+++.
T Consensus 226 Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~ 264 (933)
T KOG1274|consen 226 LRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTH 264 (933)
T ss_pred ecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccc
Confidence 753 445599999999999886 889999999999963
No 130
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.93 E-value=3e-22 Score=170.58 Aligned_cols=254 Identities=16% Similarity=0.231 Sum_probs=193.1
Q ss_pred ceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEecccccccc
Q 040361 134 SQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEK 213 (413)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~ 213 (413)
+.+.++.|.++|+.+ +|..+|.|.||+..+.+..+....|.+.|.+++.-.+|. |++|+.|..|..||-.-.+....
T Consensus 247 k~Vl~v~F~engdvi--TgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~~y~k~r~~ 323 (626)
T KOG2106|consen 247 KFVLCVTFLENGDVI--TGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWDDNYRKLRET 323 (626)
T ss_pred eEEEEEEEcCCCCEE--eecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc-EeecCccceEEeccccccccccc
Confidence 668899999998854 477799999999988888877779999999999999986 55599999999999322211110
Q ss_pred cc----ccceeecCCCceeee-------------cCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEE
Q 040361 214 RV----RNMQIEAPRKDYVIV-------------ETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYV 276 (413)
Q Consensus 214 ~~----~~~~~~~~~~~~~~~-------------~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 276 (413)
.+ .......+.+.-++. ........+|......++.+|+.+.+++++.|+.+++|+ ..+.+
T Consensus 324 elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~ 401 (626)
T KOG2106|consen 324 ELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLE 401 (626)
T ss_pred cCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCcee
Confidence 00 001111111111111 122345578999999999999999999999999999999 55555
Q ss_pred EEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCceeee-eecCCceeEEEecCCCCEEEEeCCCCeEEEEECCC
Q 040361 277 RSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKHLAS-SESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNS 355 (413)
Q Consensus 277 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~ 355 (413)
.+... ..++.++.|+|.| .++.|...|...+.|.+.+.+.. .....+++++.|+|+|.+||+|+.|+.|+||.+..
T Consensus 402 wt~~~--~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~ 478 (626)
T KOG2106|consen 402 WTKII--EDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSA 478 (626)
T ss_pred EEEEe--cCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECC
Confidence 55544 3478899999999 99999999999999999765544 33478999999999999999999999999998864
Q ss_pred -CceEEEec-CCCCcEEEEEEccCCeEE-EEcCCCeEEEEEec
Q 040361 356 -LEVVRRYS-GVGKIITSLAVTPEECFL-AGTKDGCLLVYSIE 395 (413)
Q Consensus 356 -~~~~~~~~-~~~~~v~~~~~~~~~~~l-~~~~dg~i~vw~~~ 395 (413)
+....... .+..+|+.+.|++|++++ +-+.|-.|..|...
T Consensus 479 ~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~ 521 (626)
T KOG2106|consen 479 NGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPS 521 (626)
T ss_pred CCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccc
Confidence 33333332 344899999999998877 57889999999443
No 131
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.93 E-value=2.7e-23 Score=186.91 Aligned_cols=307 Identities=14% Similarity=0.154 Sum_probs=226.5
Q ss_pred CCeEEEEeecCCcEEEEecCceEEEEEeecc--------CCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceec
Q 040361 62 PSGIVYVGMLDSSIVLVNQGLTLSVKMWLTT--------QLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELG 133 (413)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (413)
-.|++.++...|.+.+|+-....-+...... .|-|....+++++.|+.+++|-.+. .......+...-+|.
T Consensus 256 G~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~-~dg~pR~LR~R~GHs 334 (910)
T KOG1539|consen 256 GNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDS-GDGVPRLLRSRGGHS 334 (910)
T ss_pred CCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeC-CCCcchheeeccCCC
Confidence 3566777777788888886655444433322 3567778899999999999985331 111112222233333
Q ss_pred ceeEEEEec-CCCCEEEEeecCCCeEE-----------------------------------------------------
Q 040361 134 SQCFTTMQT-PSENFLITCGNWENSFQ----------------------------------------------------- 159 (413)
Q Consensus 134 ~~~~~~~~~-~~~~~l~~~g~~d~~i~----------------------------------------------------- 159 (413)
.+..++.|. .++..++. ...|++++
T Consensus 335 ~Pp~~irfy~~~g~~ils-a~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~N 413 (910)
T KOG1539|consen 335 APPSCIRFYGSQGHFILS-AKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDN 413 (910)
T ss_pred CCchheeeeccCcEEEEe-cccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcc
Confidence 444444444 22333332 22244444
Q ss_pred ------------EEEcCCCcEEEEeecCC------CeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceee
Q 040361 160 ------------VIALNDGRVVQSIRQHR------DVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIE 221 (413)
Q Consensus 160 ------------i~~~~~~~~~~~~~~h~------~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~ 221 (413)
.|++.+...-+..-.+. ..+++++.++-|++.+.|+..|.|-+|++..+-
T Consensus 414 v~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi------------ 481 (910)
T KOG1539|consen 414 VITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGI------------ 481 (910)
T ss_pred eeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCe------------
Confidence 44443322211111123 678999999999999999999999999998886
Q ss_pred cCCCceeeecCceeee---ecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcE
Q 040361 222 APRKDYVIVETPFHIL---CGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRI 298 (413)
Q Consensus 222 ~~~~~~~~~~~~~~~~---~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 298 (413)
....+ ..|.++|+.++...-++.+++++.+|.+++||..+...+..+... ..+..+..+.....
T Consensus 482 -----------~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~--~~~~~iv~hr~s~l 548 (910)
T KOG1539|consen 482 -----------HRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLG--SSITGIVYHRVSDL 548 (910)
T ss_pred -----------eecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccC--CCcceeeeeehhhh
Confidence 33444 589999999999988899999999999999999999888888764 46888888888889
Q ss_pred EEEECCCCeEEEEEeCCceeee--eecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEcc
Q 040361 299 VLYGDDDLSLHLFSINGKHLAS--SESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTP 376 (413)
Q Consensus 299 l~~~~~d~~i~i~d~~~~~~~~--~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~ 376 (413)
++.+..|-.|+++|....++.. .+|...|++++|||||++|++++.|++|++||+.++.++-.+. -..+++++.|+|
T Consensus 549 ~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SP 627 (910)
T KOG1539|consen 549 LAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSP 627 (910)
T ss_pred hhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECC
Confidence 9999999999999998766654 4699999999999999999999999999999999999998775 567899999999
Q ss_pred CCeEEE-EcCC-CeEEEEEecC
Q 040361 377 EECFLA-GTKD-GCLLVYSIEN 396 (413)
Q Consensus 377 ~~~~l~-~~~d-g~i~vw~~~~ 396 (413)
+|.+|+ ...| .-|++|.-.+
T Consensus 628 ngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 628 NGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred CCCEEEEEEecCceEEEEEchh
Confidence 998885 5555 5699997543
No 132
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.93 E-value=1.4e-23 Score=172.34 Aligned_cols=244 Identities=15% Similarity=0.159 Sum_probs=182.4
Q ss_pred cceecceeEEEEecCC-CCEEEEeecCCCeEEEEEcCC----------------CcEEEEeecCCCeEEEEEECCC-CCE
Q 040361 129 SFELGSQCFTTMQTPS-ENFLITCGNWENSFQVIALND----------------GRVVQSIRQHRDVVSCVAVTTD-GSI 190 (413)
Q Consensus 129 ~~~~~~~~~~~~~~~~-~~~l~~~g~~d~~i~i~~~~~----------------~~~~~~~~~h~~~v~~~~~~~~-~~~ 190 (413)
.+.+.+.+..+...+- ...++++=+..|.|+||++.. .+++.++.+|...=++++|||- .-.
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~ 226 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR 226 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence 4445556666666665 345566666789999999742 3567788899999999999993 235
Q ss_pred EEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCC-CEEEEeeCCCcEEEEE
Q 040361 191 LATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVEL-DIVISGSKDGTCVFHT 269 (413)
Q Consensus 191 l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~-~~l~s~~~dg~i~vwd 269 (413)
|+||..-+.|++|...++.... -...+.+|+..|..++|+|.. ..|++|+.||+|+|||
T Consensus 227 LlsGDc~~~I~lw~~~~g~W~v--------------------d~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWD 286 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPSTGSWKV--------------------DQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWD 286 (440)
T ss_pred cccCccccceEeeeeccCceee--------------------cCccccccccchhhhccCCccCceEEeeecCceEEEEE
Confidence 8899888999999998865211 123356799999999999954 5899999999999999
Q ss_pred ccCCeEE-EEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeC----Cceeee-eecCCceeEEEecCCC-CEEEEe
Q 040361 270 LREGRYV-RSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSIN----GKHLAS-SESNGRLNCLELSACG-QFLVCG 342 (413)
Q Consensus 270 ~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~----~~~~~~-~~~~~~i~~~~~s~~~-~~l~~~ 342 (413)
+|.+... ..+...++..|+.+.|+....+|++|+.||++++||++ +..+.. ..|..+|+++.|+|.. ..|+++
T Consensus 287 iRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaas 366 (440)
T KOG0302|consen 287 IRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAAS 366 (440)
T ss_pred ecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEec
Confidence 9988322 12223346689999999988899999999999999998 333444 4689999999999974 578888
Q ss_pred CCCCeEEEEECCCCce-----------EE-----EecCC--CCcEEEEEEccC--CeEEEEcCCCeEEEEE
Q 040361 343 GDQGQIVVRSMNSLEV-----------VR-----RYSGV--GKIITSLAVTPE--ECFLAGTKDGCLLVYS 393 (413)
Q Consensus 343 ~~dg~i~v~d~~~~~~-----------~~-----~~~~~--~~~v~~~~~~~~--~~~l~~~~dg~i~vw~ 393 (413)
+.|..|.+||+.--.- +. -+-.| ...+..+.|++. |.+++.+.|| +.||.
T Consensus 367 g~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 367 GEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred cCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 9999999999853110 00 11123 346888999998 7888888888 44553
No 133
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=2.5e-23 Score=184.23 Aligned_cols=325 Identities=16% Similarity=0.168 Sum_probs=231.5
Q ss_pred CCCCCeEEEEeecCCcEEEEecCceEEEEEe-------------------------------eccCCCCCCceeeecCCC
Q 040361 59 RHQPSGIVYVGMLDSSIVLVNQGLTLSVKMW-------------------------------LTTQLQSGGNFTFSGSQD 107 (413)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~s~~~~~l~~~~~d 107 (413)
+.-...+++.|+.++.+.+.+.+.-.-.... ..+.|.+....+.+.-.|
T Consensus 266 IcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYnd 345 (1080)
T KOG1408|consen 266 ICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYND 345 (1080)
T ss_pred eeeecceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcC
Confidence 3346788999999999999884432111000 112366666666666677
Q ss_pred CccccCCCcCCCcccCCCC--cccceecceeEEEEecC-----------CCCEEEEeecCCCeEEEEEcCCC---cEEE-
Q 040361 108 PFFGVGADILSPRNVGSPL--AESFELGSQCFTTMQTP-----------SENFLITCGNWENSFQVIALNDG---RVVQ- 170 (413)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-----------~~~~l~~~g~~d~~i~i~~~~~~---~~~~- 170 (413)
..+-+|+ .+....+- ...+.|...+..+.-.| ....++. ++.|++|++|++..+ +..+
T Consensus 346 hSlYvWD----vrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~T-CSsD~TIRlW~l~~ctnn~vyrR 420 (1080)
T KOG1408|consen 346 HSLYVWD----VRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTT-CSSDGTIRLWDLAFCTNNQVYRR 420 (1080)
T ss_pred ceEEEEe----ccccccccceeeeeeccceeeeeccccccccCcccccCCccceeE-ecCCCcEEEeecccccccceeec
Confidence 7777753 33322221 11222333333332222 1223444 455999999998652 1110
Q ss_pred ---------Ee------------------------ecCCCeEEEEEECCCCCEEEEccCCCcEEEEEecccccccccccc
Q 040361 171 ---------SI------------------------RQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRN 217 (413)
Q Consensus 171 ---------~~------------------------~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~ 217 (413)
.. .+....+.+++.+|+|++|++|..-|.+++|++...+
T Consensus 421 Nils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~-------- 492 (1080)
T KOG1408|consen 421 NILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELE-------- 492 (1080)
T ss_pred ccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhh--------
Confidence 00 0223479999999999999999999999999998776
Q ss_pred ceeecCCCceeeecCceeeeecCCCCeEEEEEec---CCCEEEEeeCCCcEEEEEccC-CeEEEEEeCCCCCceeeEEEc
Q 040361 218 MQIEAPRKDYVIVETPFHILCGHDDIITCLYVSV---ELDIVISGSKDGTCVFHTLRE-GRYVRSLCHPSGSALSKLAAS 293 (413)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~---~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~~v~~~~~~ 293 (413)
....+..|+..|.|+.++. ..++|++++.|..|.++|... ..++.++..| ...|+++.|.
T Consensus 493 ---------------~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~H-SssITsvKFa 556 (1080)
T KOG1408|consen 493 ---------------YTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGH-SSSITSVKFA 556 (1080)
T ss_pred ---------------hhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhccc-ccceeEEEEe
Confidence 4667789999999999985 346899999999999999864 4455666665 5689999998
Q ss_pred cCC--cEEEEECCCCeEEEEEeC----Cceeee---eecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecC
Q 040361 294 RHG--RIVLYGDDDLSLHLFSIN----GKHLAS---SESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSG 364 (413)
Q Consensus 294 ~~~--~~l~~~~~d~~i~i~d~~----~~~~~~---~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~ 364 (413)
-+| ..+++++.|..|.+-..+ +..... ......+..|+..|..+++++++.|..|+|||+.+++..+.|++
T Consensus 557 ~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKg 636 (1080)
T KOG1408|consen 557 CNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKG 636 (1080)
T ss_pred ecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecc
Confidence 877 678888888776544333 222211 12346789999999999999999999999999999999999974
Q ss_pred ---CCCcEEEEEEccCCeEEE-EcCCCeEEEEEecCCcccccccccccCCcCC
Q 040361 365 ---VGKIITSLAVTPEECFLA-GTKDGCLLVYSIENRRTSLPRNVKSKASITG 413 (413)
Q Consensus 365 ---~~~~v~~~~~~~~~~~l~-~~~dg~i~vw~~~~~~~~~~~~~~~~~~i~g 413 (413)
|.+....+...|.|.|++ .+.|.++.++|+.+++.. .+...|...|||
T Consensus 637 s~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcv-A~m~GHsE~VTG 688 (1080)
T KOG1408|consen 637 SRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECV-AQMTGHSEAVTG 688 (1080)
T ss_pred cccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhh-hhhcCcchheee
Confidence 667888999999998886 789999999999998654 567788887776
No 134
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.6e-22 Score=162.06 Aligned_cols=247 Identities=14% Similarity=0.172 Sum_probs=185.2
Q ss_pred cceeEEEEecCCCCEEEEeecCCCeEEEEEcCC----CcEEEEeecCCCeEEEEEECC--CCCEEEEccCCCcEEEEEec
Q 040361 133 GSQCFTTMQTPSENFLITCGNWENSFQVIALND----GRVVQSIRQHRDVVSCVAVTT--DGSILATGSYDTTVMVWEVI 206 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~----~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~dg~i~iw~~~ 206 (413)
..-+.++.|...|+++++|++ |++++|||..+ ..+....+.|.+.|..+.|.+ -|+.+++++.|+++.||.-.
T Consensus 13 ~DlihdVs~D~~GRRmAtCSs-Dq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~ 91 (361)
T KOG2445|consen 13 KDLIHDVSFDFYGRRMATCSS-DQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQ 91 (361)
T ss_pred cceeeeeeecccCceeeeccC-CCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeec
Confidence 455778889999999999776 99999999643 356677889999999999965 48999999999999999864
Q ss_pred cccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecC--CCEEEEeeCCCcEEEEEccCCeEEE------E
Q 040361 207 RARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVE--LDIVISGSKDGTCVFHTLREGRYVR------S 278 (413)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~------~ 278 (413)
....... -+. .....++......|+.+.|.|. |-.+++++.||.++||+.-.-..+. .
T Consensus 92 ~~~~~~~-~~~-------------Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~E 157 (361)
T KOG2445|consen 92 EKSEEAH-GRR-------------WVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHE 157 (361)
T ss_pred ccccccc-cce-------------eEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhh
Confidence 2221000 000 0135667778889999999994 5589999999999999865433222 2
Q ss_pred Ee------CCCCCceeeEEEccC---CcEEEEECCC-----CeEEEEEeC--Cceeee----eecCCceeEEEecCC---
Q 040361 279 LC------HPSGSALSKLAASRH---GRIVLYGDDD-----LSLHLFSIN--GKHLAS----SESNGRLNCLELSAC--- 335 (413)
Q Consensus 279 ~~------~~~~~~v~~~~~~~~---~~~l~~~~~d-----~~i~i~d~~--~~~~~~----~~~~~~i~~~~~s~~--- 335 (413)
+. ........++.|+|. ..+|++|+.+ +.++||... +++... ..+..+|+.++|.|+
T Consensus 158 i~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr 237 (361)
T KOG2445|consen 158 IQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGR 237 (361)
T ss_pred hhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCC
Confidence 22 112245678889874 4678888876 478888775 323222 368899999999997
Q ss_pred -CCEEEEeCCCCeEEEEECCC--------------------CceEEEecCCCCcEEEEEEccCCeEEE-EcCCCeEEEEE
Q 040361 336 -GQFLVCGGDQGQIVVRSMNS--------------------LEVVRRYSGVGKIITSLAVTPEECFLA-GTKDGCLLVYS 393 (413)
Q Consensus 336 -~~~l~~~~~dg~i~v~d~~~--------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~dg~i~vw~ 393 (413)
...||+++.|| |+||.+.. -+.+..+..|.+.|..+.|.-.|.+|+ .+.||+|++|.
T Consensus 238 ~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 238 SYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWK 316 (361)
T ss_pred ceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehh
Confidence 35799999999 99999863 123456778999999999999998885 89999999997
Q ss_pred ec
Q 040361 394 IE 395 (413)
Q Consensus 394 ~~ 395 (413)
..
T Consensus 317 an 318 (361)
T KOG2445|consen 317 AN 318 (361)
T ss_pred hh
Confidence 64
No 135
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.92 E-value=9.5e-24 Score=186.13 Aligned_cols=219 Identities=19% Similarity=0.281 Sum_probs=182.8
Q ss_pred EEEeecCCCeEEEEEcCCCcEE--EEeecCCCeEEE-EEECC-CCCEEEEccCCCcEEEEEeccccccccccccceeecC
Q 040361 148 LITCGNWENSFQVIALNDGRVV--QSIRQHRDVVSC-VAVTT-DGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAP 223 (413)
Q Consensus 148 l~~~g~~d~~i~i~~~~~~~~~--~~~~~h~~~v~~-~~~~~-~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 223 (413)
.+++++.||++++|+-..++.+ ..+.+|.+-|.+ +++.+ ++-.|++|+.|+.|.+|......
T Consensus 27 ~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~-------------- 92 (745)
T KOG0301|consen 27 CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAE-------------- 92 (745)
T ss_pred EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCC--------------
Confidence 4555777999999997655544 456778888877 88875 55569999999999999998887
Q ss_pred CCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEEC
Q 040361 224 RKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGD 303 (413)
Q Consensus 224 ~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 303 (413)
+...+.+|...|.+++...++. +++|+.|.++++|-. +++...+..| ...|.+++.-|++ .+++|+
T Consensus 93 ---------P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH-~asVWAv~~l~e~-~~vTgs 158 (745)
T KOG0301|consen 93 ---------PLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGH-TASVWAVASLPEN-TYVTGS 158 (745)
T ss_pred ---------chhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCc-chheeeeeecCCC-cEEecc
Confidence 8999999999999999877776 999999999999975 5556667766 5689999988887 899999
Q ss_pred CCCeEEEEEeCCceeeeeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEcc-CCeEEE
Q 040361 304 DDLSLHLFSINGKHLASSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTP-EECFLA 382 (413)
Q Consensus 304 ~d~~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~ 382 (413)
.|..|++|.-........+|...|+.+++-+++. +++++.||.|++|++ +++.+.++.+|..-|.++...+ ++.+++
T Consensus 159 aDKtIklWk~~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs 236 (745)
T KOG0301|consen 159 ADKTIKLWKGGTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVS 236 (745)
T ss_pred CcceeeeccCCchhhhhccchhheeeeEEecCCC-eEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEE
Confidence 9999999987433333457999999999987754 678889999999999 7899999999999999999544 566778
Q ss_pred EcCCCeEEEEEecC
Q 040361 383 GTKDGCLLVYSIEN 396 (413)
Q Consensus 383 ~~~dg~i~vw~~~~ 396 (413)
+++|+++++|+...
T Consensus 237 ~gEDrtlriW~~~e 250 (745)
T KOG0301|consen 237 TGEDRTLRIWKKDE 250 (745)
T ss_pred ecCCceEEEeecCc
Confidence 99999999999873
No 136
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.92 E-value=1.6e-23 Score=178.01 Aligned_cols=251 Identities=16% Similarity=0.249 Sum_probs=202.1
Q ss_pred eEEEEecCCCCEEEEeecCCCeEEEEEcCC--CcE--EEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEecccccc
Q 040361 136 CFTTMQTPSENFLITCGNWENSFQVIALND--GRV--VQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAP 211 (413)
Q Consensus 136 ~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~--~~~--~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~ 211 (413)
+.++.|.......++....|..+++|.-.. +++ +....+ +.-.|++......++++|+..+.|+|||++...
T Consensus 37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~g--d~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl-- 112 (673)
T KOG4378|consen 37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTG--DNAFCVACASQSLYEISGGQSGCVKIWDLRAKL-- 112 (673)
T ss_pred ceeeeccccceEEEeecCCceeEEEecccCCCCccceeecccc--chHHHHhhhhcceeeeccCcCceeeehhhHHHH--
Confidence 677888777765555555588899996432 222 222333 244566655666899999999999999998665
Q ss_pred ccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEE
Q 040361 212 EKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLA 291 (413)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~ 291 (413)
..+.+++|...|+++.++....++++++..|-|.+..+.++.....+..+.+..|+-+.
T Consensus 113 ---------------------~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ 171 (673)
T KOG4378|consen 113 ---------------------IHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLR 171 (673)
T ss_pred ---------------------HhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEee
Confidence 57778999999999999999999999999999999999999988888888777888999
Q ss_pred EccCCcE-EEEECCCCeEEEEEeCCceeee---eecCCceeEEEecCCC-CEEEEeCCCCeEEEEECCCCceEEEecCCC
Q 040361 292 ASRHGRI-VLYGDDDLSLHLFSINGKHLAS---SESNGRLNCLELSACG-QFLVCGGDQGQIVVRSMNSLEVVRRYSGVG 366 (413)
Q Consensus 292 ~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~---~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~ 366 (413)
+++..+. |.+++.+|.|.+||+.+..... ..|..+...++|+|.. .+|++.+.|..|.+||..+.+...++. ..
T Consensus 172 ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~ 250 (673)
T KOG4378|consen 172 YSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YS 250 (673)
T ss_pred cccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee-ec
Confidence 9997655 5678899999999999765443 4688899999999976 567788999999999999877777775 56
Q ss_pred CcEEEEEEccCCeEEE-EcCCCeEEEEEecCCcccccccccccCCcC
Q 040361 367 KIITSLAVTPEECFLA-GTKDGCLLVYSIENRRTSLPRNVKSKASIT 412 (413)
Q Consensus 367 ~~v~~~~~~~~~~~l~-~~~dg~i~vw~~~~~~~~~~~~~~~~~~i~ 412 (413)
.+...++|.++|.+|+ |...|.|..||++..+.+....-.|...|+
T Consensus 251 ~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt 297 (673)
T KOG4378|consen 251 HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVT 297 (673)
T ss_pred CCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeeccccee
Confidence 7899999999998885 889999999999998888776656655543
No 137
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.92 E-value=2.3e-23 Score=165.82 Aligned_cols=219 Identities=19% Similarity=0.244 Sum_probs=170.9
Q ss_pred eecCCCeEEEEEECC-CCCEEEEccCCCcEEEEEecccccccc--ccccceeecCCCceeeecCceeeeecCCCCeEEEE
Q 040361 172 IRQHRDVVSCVAVTT-DGSILATGSYDTTVMVWEVIRARAPEK--RVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLY 248 (413)
Q Consensus 172 ~~~h~~~v~~~~~~~-~~~~l~s~s~dg~i~iw~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~ 248 (413)
.+.|.+.|+.+...+ .|+++++|+.||.|.+||+++....+. .+.... .+. ....-.+|...|..+.
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~--------c~v--~~~h~~~Hky~iss~~ 108 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHK--------CIV--AKQHENGHKYAISSAI 108 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceehee--------eec--cccCCccceeeeeeeE
Confidence 345889999999988 699999999999999999987652211 110000 000 1122356888999999
Q ss_pred Eec-CCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccC---CcEEEEECCCCeEEEEEeC-Cceeee-ee
Q 040361 249 VSV-ELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRH---GRIVLYGDDDLSLHLFSIN-GKHLAS-SE 322 (413)
Q Consensus 249 ~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~i~d~~-~~~~~~-~~ 322 (413)
|-| |..++.+++-|.++++||..+.+....++.+. .|.+-+++|- ..++++|..+-.|++.|+. |..-.. .+
T Consensus 109 WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~--~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsG 186 (397)
T KOG4283|consen 109 WYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEG--KVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSG 186 (397)
T ss_pred EeeecCceeecccccceEEEeecccceeeEEeecCc--eeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeecc
Confidence 998 66789999999999999999999998888753 6888888883 4578889999999999998 444333 57
Q ss_pred cCCceeEEEecCCCCE-EEEeCCCCeEEEEECCCC-ceEEE--------------ecCCCCcEEEEEEccCCeEE-EEcC
Q 040361 323 SNGRLNCLELSACGQF-LVCGGDQGQIVVRSMNSL-EVVRR--------------YSGVGKIITSLAVTPEECFL-AGTK 385 (413)
Q Consensus 323 ~~~~i~~~~~s~~~~~-l~~~~~dg~i~v~d~~~~-~~~~~--------------~~~~~~~v~~~~~~~~~~~l-~~~~ 385 (413)
|...|.++.|+|...+ |++|+.||.|++||++.. -+... -..|.+.|.+++|+.++.++ +++.
T Consensus 187 Hr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt 266 (397)
T KOG4283|consen 187 HRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT 266 (397)
T ss_pred ccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC
Confidence 9999999999998875 678999999999999753 12222 23577899999999998766 5899
Q ss_pred CCeEEEEEecCCccccc
Q 040361 386 DGCLLVYSIENRRTSLP 402 (413)
Q Consensus 386 dg~i~vw~~~~~~~~~~ 402 (413)
|..+++|+..+|+..+.
T Consensus 267 d~r~r~wn~~~G~ntl~ 283 (397)
T KOG4283|consen 267 DDRIRVWNMESGRNTLR 283 (397)
T ss_pred ccceEEeecccCccccc
Confidence 99999999999877654
No 138
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=9.7e-24 Score=163.57 Aligned_cols=236 Identities=15% Similarity=0.105 Sum_probs=181.8
Q ss_pred CCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecC--CCCEEEEeecCCCeEEEEEcCCCcEE--E
Q 040361 95 QSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTP--SENFLITCGNWENSFQVIALNDGRVV--Q 170 (413)
Q Consensus 95 s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~g~~d~~i~i~~~~~~~~~--~ 170 (413)
.--|+.|++++.|++++++...-+.. ...+....+|.+++..+.|.+ .|..|+. +++||.|.||.-++|+-. .
T Consensus 20 DyygkrlATcsSD~tVkIf~v~~n~~--s~ll~~L~Gh~GPVwqv~wahPk~G~iLAS-csYDgkVIiWke~~g~w~k~~ 96 (299)
T KOG1332|consen 20 DYYGKRLATCSSDGTVKIFEVRNNGQ--SKLLAELTGHSGPVWKVAWAHPKFGTILAS-CSYDGKVIIWKEENGRWTKAY 96 (299)
T ss_pred hhhcceeeeecCCccEEEEEEcCCCC--ceeeeEecCCCCCeeEEeecccccCcEeeE-eecCceEEEEecCCCchhhhh
Confidence 34578999999999999964322211 244555566788899998877 4555555 566999999999887543 4
Q ss_pred EeecCCCeEEEEEECCC--CCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEE
Q 040361 171 SIRQHRDVVSCVAVTTD--GSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLY 248 (413)
Q Consensus 171 ~~~~h~~~v~~~~~~~~--~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~ 248 (413)
....|...|++++|.|. |-.|+.++.||.|.+.+.+.... .........|.-.|++++
T Consensus 97 e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~--------------------w~t~ki~~aH~~GvnsVs 156 (299)
T KOG1332|consen 97 EHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGG--------------------WTTSKIVFAHEIGVNSVS 156 (299)
T ss_pred hhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCC--------------------ccchhhhhccccccceee
Confidence 45679999999999995 67899999999999999977621 012345678999999999
Q ss_pred EecC---C-----------CEEEEeeCCCcEEEEEccCCeE--EEEEeCCCCCceeeEEEccCC----cEEEEECCCCeE
Q 040361 249 VSVE---L-----------DIVISGSKDGTCVFHTLREGRY--VRSLCHPSGSALSKLAASRHG----RIVLYGDDDLSL 308 (413)
Q Consensus 249 ~~~~---~-----------~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~d~~i 308 (413)
|.|. | +.|++|+.|..|+||+..+++- .+.+..| ...|+.++|.|.- .+|++++.||++
T Consensus 157 wapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H-~dwVRDVAwaP~~gl~~s~iAS~SqDg~v 235 (299)
T KOG1332|consen 157 WAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGH-KDWVRDVAWAPSVGLPKSTIASCSQDGTV 235 (299)
T ss_pred ecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhc-chhhhhhhhccccCCCceeeEEecCCCcE
Confidence 9985 4 5699999999999999987643 2335555 4689999999953 579999999999
Q ss_pred EEEEeCCce--e---eeeecCCceeEEEecCCCCEEEEeCCCCeEEEEECC
Q 040361 309 HLFSINGKH--L---ASSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMN 354 (413)
Q Consensus 309 ~i~d~~~~~--~---~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~ 354 (413)
.||..+... - ........+..++||..|+.|++++.|+.|.+|.-.
T Consensus 236 iIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 236 IIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred EEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 999887221 1 112356779999999999999999999999999654
No 139
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.3e-21 Score=172.41 Aligned_cols=241 Identities=13% Similarity=0.163 Sum_probs=200.0
Q ss_pred cceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCc-EEEEeecC-CCeEEEEEECCCCCEEEEccCCCcEEEEEeccccc
Q 040361 133 GSQCFTTMQTPSENFLITCGNWENSFQVIALNDGR-VVQSIRQH-RDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARA 210 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~-~~~~~~~h-~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~ 210 (413)
++.+.+++++...+.|++ +..+|.|.||++..+= +...+.++ ...|.+++|+ ++..|++.+.+|.|.-||+.+.+
T Consensus 25 Ps~I~slA~s~kS~~lAv-sRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk- 101 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAV-SRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLK- 101 (691)
T ss_pred ccceEEEEEeccCCceee-eccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCc-
Confidence 567899999999999777 5559999999997643 34556664 4679999999 55678899999999999999988
Q ss_pred cccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCC-CCCceee
Q 040361 211 PEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHP-SGSALSK 289 (413)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~~v~~ 289 (413)
+...+....+.|++++.+|.+..++.|+.||.++..+...++........ ..+.+.+
T Consensus 102 ----------------------~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLs 159 (691)
T KOG2048|consen 102 ----------------------QKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLS 159 (691)
T ss_pred ----------------------eeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEE
Confidence 67778888899999999999999999999998888888777766544322 2468999
Q ss_pred EEEccCCcEEEEECCCCeEEEEEeC-Cceeeee---------ecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceE
Q 040361 290 LAASRHGRIVLYGDDDLSLHLFSIN-GKHLASS---------ESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVV 359 (413)
Q Consensus 290 ~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~---------~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~ 359 (413)
+.|+|++..++.|+.||.|++||.. +..+... ....-|.++.|-.+ ..|++|+.-|+|.+||...+.++
T Consensus 160 lsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLi 238 (691)
T KOG2048|consen 160 LSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLI 238 (691)
T ss_pred EEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchh
Confidence 9999999999999999999999998 4444311 12334677777744 47899999999999999999999
Q ss_pred EEecCCCCcEEEEEEccC-CeEEEEcCCCeEEEEEecCCcc
Q 040361 360 RRYSGVGKIITSLAVTPE-ECFLAGTKDGCLLVYSIENRRT 399 (413)
Q Consensus 360 ~~~~~~~~~v~~~~~~~~-~~~l~~~~dg~i~vw~~~~~~~ 399 (413)
..+..|...|.+++..++ .++++++.|+.|..|...+.+.
T Consensus 239 qS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~ 279 (691)
T KOG2048|consen 239 QSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS 279 (691)
T ss_pred hhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcc
Confidence 999999999999999998 5677899999999999888755
No 140
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.91 E-value=2.1e-22 Score=162.37 Aligned_cols=286 Identities=16% Similarity=0.199 Sum_probs=205.7
Q ss_pred EEeeccCCCCCCceeeecCCCCccccCCCcCCCcc--------cCCCCcccceecceeEEEEecC------CCCEEEEee
Q 040361 87 KMWLTTQLQSGGNFTFSGSQDPFFGVGADILSPRN--------VGSPLAESFELGSQCFTTMQTP------SENFLITCG 152 (413)
Q Consensus 87 ~~~~~~~~s~~~~~l~~~~~d~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~g 152 (413)
....-|.+||||..+.+-+.|..+.+|....+... ......-....+..+...+|.+ ....++++.
T Consensus 50 nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~s 129 (406)
T KOG2919|consen 50 NFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVS 129 (406)
T ss_pred hhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeec
Confidence 33445678999999999999999999863322111 1112222233356677777763 345566667
Q ss_pred cCCCeEEEEEcCCCcEEEEeec--CCC---eEEEEEECCCCCEEEEccCCCcEEEEEec-cccccccccccceeecCCCc
Q 040361 153 NWENSFQVIALNDGRVVQSIRQ--HRD---VVSCVAVTTDGSILATGSYDTTVMVWEVI-RARAPEKRVRNMQIEAPRKD 226 (413)
Q Consensus 153 ~~d~~i~i~~~~~~~~~~~~~~--h~~---~v~~~~~~~~~~~l~s~s~dg~i~iw~~~-~~~~~~~~~~~~~~~~~~~~ 226 (413)
+.+.-|++||.-+|+....+++ |.+ ...+++|+|||.+|+.|- ...|+++|+. .++......
T Consensus 130 sr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~----------- 197 (406)
T KOG2919|consen 130 SRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYT----------- 197 (406)
T ss_pred cccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchh-----------
Confidence 7799999999999999887765 444 346899999999998875 5789999994 443211100
Q ss_pred eeeecCceeeeecCCCCeEEEEEecCC-CEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECC-
Q 040361 227 YVIVETPFHILCGHDDIITCLYVSVEL-DIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDD- 304 (413)
Q Consensus 227 ~~~~~~~~~~~~~h~~~i~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~- 304 (413)
+....-.+..+-|.|++|+|-. ..++.|+...++-||.-..+.++..+..+ +..|+.+.|.++|+.|++|..
T Consensus 198 -----t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh-~gGvThL~~~edGn~lfsGaRk 271 (406)
T KOG2919|consen 198 -----TVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGH-GGGVTHLQWCEDGNKLFSGARK 271 (406)
T ss_pred -----hhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeeccc-CCCeeeEEeccCcCeecccccC
Confidence 0011123456788999999954 48999999999888888788888877755 668999999999999999875
Q ss_pred CCeEEEEEeCCc--eeee-eecCC-ceeE--EEecCCCCEEEEeCCCCeEEEEECCC-CceEEEecCCCCcEEEEEEccC
Q 040361 305 DLSLHLFSINGK--HLAS-SESNG-RLNC--LELSACGQFLVCGGDQGQIVVRSMNS-LEVVRRYSGVGKIITSLAVTPE 377 (413)
Q Consensus 305 d~~i~i~d~~~~--~~~~-~~~~~-~i~~--~~~s~~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~v~~~~~~~~ 377 (413)
+-.|..||++.. .+.. ..|.+ .-.. ....|++++|++|+.||.|++||+++ +..+..+..++..++.++++|-
T Consensus 272 ~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~ 351 (406)
T KOG2919|consen 272 DDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPI 351 (406)
T ss_pred CCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcc
Confidence 668999999832 2222 12222 2223 34568899999999999999999998 7778888889999999999998
Q ss_pred CeEEEEcCCCeEE
Q 040361 378 ECFLAGTKDGCLL 390 (413)
Q Consensus 378 ~~~l~~~~dg~i~ 390 (413)
-.+++.+....+.
T Consensus 352 mpilatssGqr~f 364 (406)
T KOG2919|consen 352 MPILATSSGQRIF 364 (406)
T ss_pred cceeeeccCceee
Confidence 6666655444443
No 141
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=8e-24 Score=196.86 Aligned_cols=245 Identities=19% Similarity=0.278 Sum_probs=194.6
Q ss_pred cceeEEEEecCCCCE---EEEeecCCCeEEEEEcCC---C---cEEEEeecCCCeEEEEEECCC-CCEEEEccCCCcEEE
Q 040361 133 GSQCFTTMQTPSENF---LITCGNWENSFQVIALND---G---RVVQSIRQHRDVVSCVAVTTD-GSILATGSYDTTVMV 202 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~---l~~~g~~d~~i~i~~~~~---~---~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~dg~i~i 202 (413)
...-..++|.+.+.. ++++|..||.|.+||... + ..+.....|.+.|..+.|++. ++.|++|+.||.|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 444566788888777 788899999999999754 2 344566779999999999996 459999999999999
Q ss_pred EEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecC-CCEEEEeeCCCcEEEEEccCCeEEEEEeC
Q 040361 203 WEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVE-LDIVISGSKDGTCVFHTLREGRYVRSLCH 281 (413)
Q Consensus 203 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 281 (413)
||+...+.+... .-....+.|.+++|+.. .+.|++++.+|++.|||++..+.+..+..
T Consensus 144 WDlnn~~tP~~~---------------------~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~ 202 (1049)
T KOG0307|consen 144 WDLNKPETPFTP---------------------GSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSD 202 (1049)
T ss_pred eccCCcCCCCCC---------------------CCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccccccc
Confidence 999876521110 01224578999999874 45788999999999999999888777765
Q ss_pred CCC-CceeeEEEccCC-cEEEEECCC---CeEEEEEeC--Cceeee-eecCCceeEEEecCCC-CEEEEeCCCCeEEEEE
Q 040361 282 PSG-SALSKLAASRHG-RIVLYGDDD---LSLHLFSIN--GKHLAS-SESNGRLNCLELSACG-QFLVCGGDQGQIVVRS 352 (413)
Q Consensus 282 ~~~-~~v~~~~~~~~~-~~l~~~~~d---~~i~i~d~~--~~~~~~-~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~v~d 352 (413)
+.+ ..+..++|+|+. ..+++++.| -.|.+||++ ...+.. ..|...|.++.|++.+ ++|++++.|+.|.+|+
T Consensus 203 ~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN 282 (1049)
T KOG0307|consen 203 TPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWN 282 (1049)
T ss_pred CCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEec
Confidence 433 357889999975 345555443 379999998 333333 4788999999999977 8999999999999999
Q ss_pred CCCCceEEEecCCCCcEEEEEEccCC--eEEEEcCCCeEEEEEecCCc
Q 040361 353 MNSLEVVRRYSGVGKIITSLAVTPEE--CFLAGTKDGCLLVYSIENRR 398 (413)
Q Consensus 353 ~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~dg~i~vw~~~~~~ 398 (413)
.++++.+..+....+.+..+.|.|.. .+.+++-||.|-||.+.+..
T Consensus 283 ~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 283 PNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 99999999999888899999999984 45569999999999998765
No 142
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.1e-22 Score=170.58 Aligned_cols=229 Identities=19% Similarity=0.259 Sum_probs=174.5
Q ss_pred EEEEeecCCCeEEEEEcCCCcE---E------------------EEeecCCCeEEEEEECCC-CCEEEEccCCCcEEEEE
Q 040361 147 FLITCGNWENSFQVIALNDGRV---V------------------QSIRQHRDVVSCVAVTTD-GSILATGSYDTTVMVWE 204 (413)
Q Consensus 147 ~l~~~g~~d~~i~i~~~~~~~~---~------------------~~~~~h~~~v~~~~~~~~-~~~l~s~s~dg~i~iw~ 204 (413)
.++|.|+.|..|.|||+.-... . ..-.+|++.|..++|+.. .+.|++||.|.+|++||
T Consensus 193 NyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD 272 (463)
T KOG0270|consen 193 NYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWD 272 (463)
T ss_pred ceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEE
Confidence 3566688899999999742110 0 012369999999999875 56799999999999999
Q ss_pred eccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecC-CCEEEEeeCCCcEEEEEccCC-eEEEEEeCC
Q 040361 205 VIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVE-LDIVISGSKDGTCVFHTLREG-RYVRSLCHP 282 (413)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~ 282 (413)
+.+++ +..++..|.+.|.++.|+|. ...|++|+.|+++.+.|.|.. ..-..+..
T Consensus 273 ~~~g~-----------------------p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~- 328 (463)
T KOG0270|consen 273 VDTGK-----------------------PKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKF- 328 (463)
T ss_pred cCCCC-----------------------cceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEe-
Confidence 99998 78888889999999999985 468999999999999999842 22222322
Q ss_pred CCCceeeEEEccC-CcEEEEECCCCeEEEEEeC--Cceeee-eecCCceeEEEecCCC-CEEEEeCCCCeEEEEECCCCc
Q 040361 283 SGSALSKLAASRH-GRIVLYGDDDLSLHLFSIN--GKHLAS-SESNGRLNCLELSACG-QFLVCGGDQGQIVVRSMNSLE 357 (413)
Q Consensus 283 ~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~--~~~~~~-~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~v~d~~~~~ 357 (413)
...|-.++|.|. ...++++..||+|+-+|++ ++.+.. ..|.++|.++++++.- .++++++.|+.|++|++..-.
T Consensus 329 -~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~ 407 (463)
T KOG0270|consen 329 -DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDS 407 (463)
T ss_pred -ccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCC
Confidence 346889999995 5678888999999999998 455554 5799999999998764 578899999999999987543
Q ss_pred e--EEEecCCCCcEEEEEEccC--CeEEEEcCCCeEEEEEecCCccc
Q 040361 358 V--VRRYSGVGKIITSLAVTPE--ECFLAGTKDGCLLVYSIENRRTS 400 (413)
Q Consensus 358 ~--~~~~~~~~~~v~~~~~~~~--~~~l~~~~dg~i~vw~~~~~~~~ 400 (413)
. +..-.---+...|+++.|+ +.++.|+..+.+++||+.+....
T Consensus 408 ~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 408 PKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred CcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 3 2111111234677778887 34445888889999999887544
No 143
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=8.3e-22 Score=158.70 Aligned_cols=258 Identities=14% Similarity=0.131 Sum_probs=186.7
Q ss_pred ceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcE--EEEeec--CCCeEEEEEECCCCCEE-EEccCCCcEEEEE
Q 040361 130 FELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRV--VQSIRQ--HRDVVSCVAVTTDGSIL-ATGSYDTTVMVWE 204 (413)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~--~~~~~~--h~~~v~~~~~~~~~~~l-~s~s~dg~i~iw~ 204 (413)
.+|...+.+++|+++|++|+.++. |+.|++|++.+-.. .+.++. .-+..+.+.|.||-+-+ +++-...++++|.
T Consensus 83 KgH~~~vt~~~FsSdGK~lat~~~-Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk 161 (420)
T KOG2096|consen 83 KGHKKEVTDVAFSSDGKKLATISG-DRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYK 161 (420)
T ss_pred hccCCceeeeEEcCCCceeEEEeC-CceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEE
Confidence 356788999999999999998776 99999999875321 111111 12356788999996654 4555667899998
Q ss_pred eccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCC
Q 040361 205 VIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSG 284 (413)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 284 (413)
+.....-....... .......-..|...+..+-.-.++.++++++.|..|.+|+++ |+.+.++....
T Consensus 162 ~~K~~dG~~~~~~v-----------~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq- 228 (420)
T KOG2096|consen 162 LVKKTDGSGSHHFV-----------HIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQ- 228 (420)
T ss_pred eeecccCCCCcccc-----------cccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccc-
Confidence 86554211111000 000112234466677777777788899999999999999997 99888886542
Q ss_pred CceeeEEEccCCcEEEEECCCCeEEEEEeC----Cc------eeeeeecCCceeEEEecCCCCEEEEeCCCCeEEEEECC
Q 040361 285 SALSKLAASRHGRIVLYGDDDLSLHLFSIN----GK------HLASSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMN 354 (413)
Q Consensus 285 ~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~----~~------~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~ 354 (413)
..-...+++|+|+++++++-.--|++|.+- |. .....+|...|..++|+++.+.+++.+.||+++|||..
T Consensus 229 ~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 229 SSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred ccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence 345678999999999999988889999873 21 12234788999999999999999999999999999975
Q ss_pred C-------CceEEEec----CCCCcEEEEEEccCCeEEEEcCCCeEEEEEecCCcccc
Q 040361 355 S-------LEVVRRYS----GVGKIITSLAVTPEECFLAGTKDGCLLVYSIENRRTSL 401 (413)
Q Consensus 355 ~-------~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~dg~i~vw~~~~~~~~~ 401 (413)
- .+.+++.. ...+....++++|+|..++.+....|.++..++++..-
T Consensus 309 VrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~ 366 (420)
T KOG2096|consen 309 VRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYP 366 (420)
T ss_pred ceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccch
Confidence 2 22333321 22334458999999999998888899999998876543
No 144
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.91 E-value=7.5e-22 Score=174.27 Aligned_cols=335 Identities=13% Similarity=0.148 Sum_probs=244.1
Q ss_pred EecCCCCCCeEEEEeecCCcEEEEecCceEEEEEee----------------ccCCCCCCceeeecCCCCccccCCCcCC
Q 040361 55 ICSTRHQPSGIVYVGMLDSSIVLVNQGLTLSVKMWL----------------TTQLQSGGNFTFSGSQDPFFGVGADILS 118 (413)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~s~~~~~l~~~~~d~~~~~~~~~~~ 118 (413)
....-+|..-.++.++.|..+++|..... .-+|. .+.++|+++.+++-+..|-+++|.. .
T Consensus 271 ~sv~W~p~~~~LLSASaDksmiiW~pd~~--tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt--~ 346 (764)
T KOG1063|consen 271 YSVWWHPEGLDLLSASADKSMIIWKPDEN--TGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKT--K 346 (764)
T ss_pred EEEEEccchhhheecccCcceEEEecCCc--cceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEec--c
Confidence 33456666667888899999999986543 22342 2357999999999999999999751 1
Q ss_pred CcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCC-Cc---EEEEeecCCCeEEEEEECCCCCEEEEc
Q 040361 119 PRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALND-GR---VVQSIRQHRDVVSCVAVTTDGSILATG 194 (413)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~-~~---~~~~~~~h~~~v~~~~~~~~~~~l~s~ 194 (413)
.........-.-+|-..+..+.|.|.|++|+++|. |.+-|++---. .+ .+..-+-|.-.++|++|-+....+++|
T Consensus 347 d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~-DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSg 425 (764)
T KOG1063|consen 347 DKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSL-DQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSG 425 (764)
T ss_pred CccceeeccccccccccceeeeecCCCCEEEEecc-ccceeeecccccccceeeecccccccccceeeehccCCceeeec
Confidence 22222333334456788999999999999999887 99999986541 11 122224588899999998866789999
Q ss_pred cCCCcEEEEEecccc-----------cccc-------cc-------cccee-ecCCCce-------ee------------
Q 040361 195 SYDTTVMVWEVIRAR-----------APEK-------RV-------RNMQI-EAPRKDY-------VI------------ 229 (413)
Q Consensus 195 s~dg~i~iw~~~~~~-----------~~~~-------~~-------~~~~~-~~~~~~~-------~~------------ 229 (413)
.....+++|+....- .... .+ +.... ....+.. ..
T Consensus 426 AdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~ 505 (764)
T KOG1063|consen 426 ADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPT 505 (764)
T ss_pred ccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCCh
Confidence 999999999864221 0000 00 00000 0000000 00
Q ss_pred --------ecCceeeeecCCCCeEEEEEecCCCEEEEeeCCC-----cEEEEEccCCeEEEEEeCCCCCceeeEEEccCC
Q 040361 230 --------VETPFHILCGHDDIITCLYVSVELDIVISGSKDG-----TCVFHTLREGRYVRSLCHPSGSALSKLAASRHG 296 (413)
Q Consensus 230 --------~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 296 (413)
....+..++||...|++++.+|+++++++++... .|++|+..+-..+..+..| .-.|+.++|+||+
T Consensus 506 EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~H-sLTVT~l~FSpdg 584 (764)
T KOG1063|consen 506 EDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGH-SLTVTRLAFSPDG 584 (764)
T ss_pred HHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheeccc-ceEEEEEEECCCC
Confidence 0122667899999999999999999999998654 5899999888888878776 4689999999999
Q ss_pred cEEEEECCCCeEEEEEeCCceee------eeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCC--ceEEE--ecCCC
Q 040361 297 RIVLYGDDDLSLHLFSINGKHLA------SSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSL--EVVRR--YSGVG 366 (413)
Q Consensus 297 ~~l~~~~~d~~i~i~d~~~~~~~------~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~--~~~~~--~~~~~ 366 (413)
++|++.+.|.++.+|........ ...|..-|.++.|+|++.++++++.|.+|++|..... +.+.. ...+.
T Consensus 585 ~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~ 664 (764)
T KOG1063|consen 585 RYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFS 664 (764)
T ss_pred cEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccC
Confidence 99999999999999998522111 2357778999999999999999999999999998877 44433 23578
Q ss_pred CcEEEEEEccC-----CeEE-EEcCCCeEEEEEec
Q 040361 367 KIITSLAVTPE-----ECFL-AGTKDGCLLVYSIE 395 (413)
Q Consensus 367 ~~v~~~~~~~~-----~~~l-~~~~dg~i~vw~~~ 395 (413)
..|+.+++.|- +.++ +|-..|.|.+|...
T Consensus 665 ~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 665 LAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred CceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence 89999999874 2245 48899999999976
No 145
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.91 E-value=9e-22 Score=159.10 Aligned_cols=234 Identities=14% Similarity=0.222 Sum_probs=171.6
Q ss_pred EEEEecCC---CCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCC-CCEEEEccCCCcEEEEEeccccccc
Q 040361 137 FTTMQTPS---ENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTD-GSILATGSYDTTVMVWEVIRARAPE 212 (413)
Q Consensus 137 ~~~~~~~~---~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~dg~i~iw~~~~~~~~~ 212 (413)
+.+.|+-+ ++-++++|+.-|.|+|.|+.+++....+.+|...|+.+.+.|+ .++++++|.|.+|++|++++..
T Consensus 93 ytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~--- 169 (385)
T KOG1034|consen 93 YTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDV--- 169 (385)
T ss_pred EEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCe---
Confidence 44444432 4445555556999999999999999999999999999999996 5789999999999999999887
Q ss_pred cccccceeecCCCceeeecCceee---eecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCC-------
Q 040361 213 KRVRNMQIEAPRKDYVIVETPFHI---LCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHP------- 282 (413)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~------- 282 (413)
++.. +.+|.+.|.++.|++++.++++++.|..+++|++...+....++..
T Consensus 170 --------------------Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~ 229 (385)
T KOG1034|consen 170 --------------------CVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNK 229 (385)
T ss_pred --------------------EEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCC
Confidence 4444 4679999999999999999999999999999999843322111100
Q ss_pred --------------------CCCceeeEEEccCCcEEEEECCCCeEEEEEeC--Cceee-------------eee-cCCc
Q 040361 283 --------------------SGSALSKLAASRHGRIVLYGDDDLSLHLFSIN--GKHLA-------------SSE-SNGR 326 (413)
Q Consensus 283 --------------------~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~-------------~~~-~~~~ 326 (413)
+...|.++.|- |+++++-+-++.|..|... ++.+. ... ....
T Consensus 230 t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~ 307 (385)
T KOG1034|consen 230 TTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCD 307 (385)
T ss_pred ccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccc
Confidence 01112222221 5788888888999999882 11100 011 1122
Q ss_pred ee--EEEecCCCCEEEEeCCCCeEEEEECCCCceE--EEec--CCCCcEEEEEEccCCeEE-EEcCCCeEEEEEec
Q 040361 327 LN--CLELSACGQFLVCGGDQGQIVVRSMNSLEVV--RRYS--GVGKIITSLAVTPEECFL-AGTKDGCLLVYSIE 395 (413)
Q Consensus 327 i~--~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~--~~~~--~~~~~v~~~~~~~~~~~l-~~~~dg~i~vw~~~ 395 (413)
+. ..+|.|-+++||.|...|.|++||++..++. .++. .....|...+|+.|+.+| ..++|++|.-||.-
T Consensus 308 iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 308 IWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred eEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 33 3456677899999999999999999976653 2222 224579999999998766 58999999999853
No 146
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.91 E-value=4.9e-22 Score=175.41 Aligned_cols=279 Identities=17% Similarity=0.169 Sum_probs=208.3
Q ss_pred CCCCCceeeecCCCCccccCCCcCCCcccCCCCccccee------cceeEEEEecCCCCEEEEeecCCCeEEEEEcCCC-
Q 040361 94 LQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFEL------GSQCFTTMQTPSENFLITCGNWENSFQVIALNDG- 166 (413)
Q Consensus 94 ~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~- 166 (413)
++|.+..|.+++.|+++.+| .|............. ...-..+.|+|+++.+++-|. .|..++|...+.
T Consensus 275 W~p~~~~LLSASaDksmiiW----~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~-~Gg~hlWkt~d~~ 349 (764)
T KOG1063|consen 275 WHPEGLDLLSASADKSMIIW----KPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGR-TGGFHLWKTKDKT 349 (764)
T ss_pred EccchhhheecccCcceEEE----ecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecc-cCcEEEEeccCcc
Confidence 68999999999999999995 443332211111111 122467889999988888776 899999983321
Q ss_pred --cEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCe
Q 040361 167 --RVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDII 244 (413)
Q Consensus 167 --~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i 244 (413)
.....+.||.+.|..++|+|.|.+|++.|.|.+-+++-.-..+...- .+..-+-|...+
T Consensus 350 ~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wH-------------------EiaRPQiHGyDl 410 (764)
T KOG1063|consen 350 FWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWH-------------------EIARPQIHGYDL 410 (764)
T ss_pred ceeeccccccccccceeeeecCCCCEEEEeccccceeeeccccccccee-------------------eecccccccccc
Confidence 33455678999999999999999999999999999986542221100 233345688889
Q ss_pred EEEEEecCCCEEEEeeCCCcEEEEEccC-------------------------------------------CeE----E-
Q 040361 245 TCLYVSVELDIVISGSKDGTCVFHTLRE-------------------------------------------GRY----V- 276 (413)
Q Consensus 245 ~~~~~~~~~~~l~s~~~dg~i~vwd~~~-------------------------------------------~~~----~- 276 (413)
+|+++-+....+++|.+...+++++... |.. .
T Consensus 411 ~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~e 490 (764)
T KOG1063|consen 411 TCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAE 490 (764)
T ss_pred eeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeee
Confidence 9999988666888998888889985421 000 0
Q ss_pred ----------------------------EEEeCCCCCceeeEEEccCCcEEEEECCC-----CeEEEEEeCCce--eeee
Q 040361 277 ----------------------------RSLCHPSGSALSKLAASRHGRIVLYGDDD-----LSLHLFSINGKH--LASS 321 (413)
Q Consensus 277 ----------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~--~~~~ 321 (413)
..+ ..|+..|.+++.+|+++++++++.. ..|++|+...-. ....
T Consensus 491 t~~~~~p~~L~ePP~EdqLq~~tLwPEv~KL-YGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~ 569 (764)
T KOG1063|consen 491 TPLAAAPCELTEPPTEDQLQQNTLWPEVHKL-YGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELE 569 (764)
T ss_pred cccccCchhccCCChHHHHHHhccchhhHHh-ccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheec
Confidence 000 1135678999999999999999864 369999997432 2345
Q ss_pred ecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCce----EEEecCCCCcEEEEEEccCCe-EEEEcCCCeEEEEEecC
Q 040361 322 ESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEV----VRRYSGVGKIITSLAVTPEEC-FLAGTKDGCLLVYSIEN 396 (413)
Q Consensus 322 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~----~~~~~~~~~~v~~~~~~~~~~-~l~~~~dg~i~vw~~~~ 396 (413)
.|.-.|+.++|||||++|++.+.|.++.+|....... ....+.|+.-|.++.|+|+++ |++++.|..|++|....
T Consensus 570 ~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~ 649 (764)
T KOG1063|consen 570 GHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPD 649 (764)
T ss_pred ccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccC
Confidence 7889999999999999999999999999998754321 233678999999999999987 66799999999999988
Q ss_pred C
Q 040361 397 R 397 (413)
Q Consensus 397 ~ 397 (413)
.
T Consensus 650 ~ 650 (764)
T KOG1063|consen 650 L 650 (764)
T ss_pred c
Confidence 7
No 147
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.90 E-value=2.4e-22 Score=165.23 Aligned_cols=217 Identities=17% Similarity=0.198 Sum_probs=168.0
Q ss_pred cCCCeEEEEEECC--CCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEec
Q 040361 174 QHRDVVSCVAVTT--DGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSV 251 (413)
Q Consensus 174 ~h~~~v~~~~~~~--~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~ 251 (413)
.|.+.++.+.-.+ +..+.++=+..|.|+||++...-... ......... ....++.++.+|...=++++|||
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l---~~~~~~~~~----s~~~Pl~t~~ghk~EGy~LdWSp 221 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNAL---SEPGLEVKD----SEFRPLFTFNGHKGEGYGLDWSP 221 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhh---cCccccccc----cccCceEEecccCccceeeeccc
Confidence 4677777776665 45566777889999999986543111 000000000 12347899999999999999999
Q ss_pred C-CCEEEEeeCCCcEEEEEccCCeEEE---EEeCCCCCceeeEEEccC-CcEEEEECCCCeEEEEEeCCc----eeeeee
Q 040361 252 E-LDIVISGSKDGTCVFHTLREGRYVR---SLCHPSGSALSKLAASRH-GRIVLYGDDDLSLHLFSINGK----HLASSE 322 (413)
Q Consensus 252 ~-~~~l~s~~~dg~i~vwd~~~~~~~~---~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~----~~~~~~ 322 (413)
- ...+++|..-+.|++|...++.-.. .+.. +...|-.++|+|. ...|++++.||+|+|||++.. .+....
T Consensus 222 ~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~g-H~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kA 300 (440)
T KOG0302|consen 222 IKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTG-HTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKA 300 (440)
T ss_pred ccccccccCccccceEeeeeccCceeecCccccc-cccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeec
Confidence 3 3358899889999999998876432 2334 3567999999995 567899999999999999843 344467
Q ss_pred cCCceeEEEecCCCCEEEEeCCCCeEEEEECCC---CceEEEecCCCCcEEEEEEccC--CeEEEEcCCCeEEEEEecCC
Q 040361 323 SNGRLNCLELSACGQFLVCGGDQGQIVVRSMNS---LEVVRRYSGVGKIITSLAVTPE--ECFLAGTKDGCLLVYSIENR 397 (413)
Q Consensus 323 ~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~---~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~dg~i~vw~~~~~ 397 (413)
|.+.|+.+.|+.+..+||+|++||.++|||++. ++++..|+.|..+|+++.|+|. +.+++++.|..|.+||+.-.
T Consensus 301 h~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 301 HNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVE 380 (440)
T ss_pred cCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeecc
Confidence 899999999999888999999999999999985 5788999999999999999997 45678999999999999754
Q ss_pred c
Q 040361 398 R 398 (413)
Q Consensus 398 ~ 398 (413)
+
T Consensus 381 ~ 381 (440)
T KOG0302|consen 381 A 381 (440)
T ss_pred C
Confidence 3
No 148
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.9e-22 Score=169.15 Aligned_cols=240 Identities=18% Similarity=0.236 Sum_probs=183.4
Q ss_pred CCCceeeecCCCCccccCCCcCC----C-cccCCCCc-----------ccceecceeEEEEecCCCCEEEEeecCCCeEE
Q 040361 96 SGGNFTFSGSQDPFFGVGADILS----P-RNVGSPLA-----------ESFELGSQCFTTMQTPSENFLITCGNWENSFQ 159 (413)
Q Consensus 96 ~~~~~l~~~~~d~~~~~~~~~~~----~-~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~ 159 (413)
..|+++|.|..|..+-+|+.... | -.++.... ..-.|...+..+.|.-.-+.++++|+.|.+|+
T Consensus 190 ~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~ 269 (463)
T KOG0270|consen 190 GAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVK 269 (463)
T ss_pred CCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEE
Confidence 34589999999999999863211 1 11110000 01134556677888888889999999999999
Q ss_pred EEEcCCCcEEEEeecCCCeEEEEEECC-CCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeee
Q 040361 160 VIALNDGRVVQSIRQHRDVVSCVAVTT-DGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILC 238 (413)
Q Consensus 160 i~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (413)
+||+.+|++...+..|.+.|.++.|+| ....|++|+.|++|.+.|.+.... ....-
T Consensus 270 lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~-----------------------s~~~w 326 (463)
T KOG0270|consen 270 LWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSN-----------------------SGKEW 326 (463)
T ss_pred EEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccc-----------------------cCceE
Confidence 999999999999999999999999999 478899999999999999985431 11112
Q ss_pred cCCCCeEEEEEecCC-CEEEEeeCCCcEEEEEccCC-eEEEEEeCCCCCceeeEEEccC-CcEEEEECCCCeEEEEEeCC
Q 040361 239 GHDDIITCLYVSVEL-DIVISGSKDGTCVFHTLREG-RYVRSLCHPSGSALSKLAASRH-GRIVLYGDDDLSLHLFSING 315 (413)
Q Consensus 239 ~h~~~i~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~~ 315 (413)
...+.|-.++|.+.. ..++++..||+|+-+|+|+. ++++++..| ..+|.++++++. ..++++++.|+.+++|++..
T Consensus 327 k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AH-d~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~ 405 (463)
T KOG0270|consen 327 KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAH-DDEISGLSVNIQTPGLLSTASTDKVVKLWKFDV 405 (463)
T ss_pred EeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEec-cCCcceEEecCCCCcceeeccccceEEEEeecC
Confidence 245678889998844 57788899999999999975 889999887 459999999984 57788999999999999974
Q ss_pred ceeee---e-ecCCceeEEEecCCC-CEEEEeCCCCeEEEEECCCCceE
Q 040361 316 KHLAS---S-ESNGRLNCLELSACG-QFLVCGGDQGQIVVRSMNSLEVV 359 (413)
Q Consensus 316 ~~~~~---~-~~~~~i~~~~~s~~~-~~l~~~~~dg~i~v~d~~~~~~~ 359 (413)
..... . ..-+...|.++.|+- -.++.|+..+.++|||+.+...+
T Consensus 406 ~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 406 DSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred CCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 33221 1 122447778888875 46778888889999999887654
No 149
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.90 E-value=2.5e-21 Score=170.52 Aligned_cols=257 Identities=19% Similarity=0.298 Sum_probs=198.7
Q ss_pred eeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEecccccccc-
Q 040361 135 QCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEK- 213 (413)
Q Consensus 135 ~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~- 213 (413)
.+..++|-|||..|++++ +..+.+||.++|..++++++|.+.|.|++|+.||+.+++|+.|..|.+|+-.-......
T Consensus 14 ci~d~afkPDGsqL~lAA--g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYS 91 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA--GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYS 91 (1081)
T ss_pred chheeEECCCCceEEEec--CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeec
Confidence 567899999999999877 78999999999999999999999999999999999999999999999998653321111
Q ss_pred ---ccccceeecCCCceeee---------cCceeeeecC--CCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEE
Q 040361 214 ---RVRNMQIEAPRKDYVIV---------ETPFHILCGH--DDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSL 279 (413)
Q Consensus 214 ---~~~~~~~~~~~~~~~~~---------~~~~~~~~~h--~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 279 (413)
.+..+.+.+ ....+.. .........| ...+.+++|..||.+++.|-.+|+|.+-+- +++....+
T Consensus 92 H~D~IQCMsFNP-~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I 169 (1081)
T KOG1538|consen 92 HNDAIQCMSFNP-ITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKI 169 (1081)
T ss_pred cCCeeeEeecCc-hHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEE
Confidence 111111111 1111100 0011111223 346788999999999999999999998754 45544444
Q ss_pred eC--CCCCceeeEEEccCC-----cEEEEECCCCeEEEEEeCCceeee-eecCCceeEEEecCCCCEEEEeCCCCeEEEE
Q 040361 280 CH--PSGSALSKLAASRHG-----RIVLYGDDDLSLHLFSINGKHLAS-SESNGRLNCLELSACGQFLVCGGDQGQIVVR 351 (413)
Q Consensus 280 ~~--~~~~~v~~~~~~~~~-----~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~ 351 (413)
.. ..+++|.+++|+|.. ..+++..-..++.+|.+.|+.+.. ........|+++.++|.|++.|+.|+.+++|
T Consensus 170 ~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~f 249 (1081)
T KOG1538|consen 170 ERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLF 249 (1081)
T ss_pred eCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCceEEE
Confidence 43 345789999999953 578888888999999999888764 4566678899999999999999999999999
Q ss_pred ECCCCceEEEecCCCCcEEEEEEccCCeEEE-EcCCCeEEEEEecC
Q 040361 352 SMNSLEVVRRYSGVGKIITSLAVTPEECFLA-GTKDGCLLVYSIEN 396 (413)
Q Consensus 352 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~dg~i~vw~~~~ 396 (413)
. +.|-.+.++......|+.++..|+++.++ |+.||+|..|++..
T Consensus 250 T-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 250 T-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred e-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 6 45677777777788999999999988775 99999999999864
No 150
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=7.4e-22 Score=166.41 Aligned_cols=241 Identities=15% Similarity=0.245 Sum_probs=197.6
Q ss_pred cceeEEEEecCCCCEEEEeecCCCeEEEEEcC--CCcEEEEeecCCCeEEEEEECCCCC-EEEEccCCCcEEEEEecccc
Q 040361 133 GSQCFTTMQTPSENFLITCGNWENSFQVIALN--DGRVVQSIRQHRDVVSCVAVTTDGS-ILATGSYDTTVMVWEVIRAR 209 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~dg~i~iw~~~~~~ 209 (413)
++.+.++.|+|....++++|. |+.++||.++ ....++.+.-...+|.+.+|.|+|. .+++++.....+.||+.+.+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~-d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGL-DGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred cCCceEEEecCCCceEEEecC-CCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 677889999999888888776 9999999884 3445666666788999999999999 89999999999999998876
Q ss_pred ccccccccceeecCCCceeeecCceeeeecCC-CCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCcee
Q 040361 210 APEKRVRNMQIEAPRKDYVIVETPFHILCGHD-DIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALS 288 (413)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~ 288 (413)
. ..+..+.++. ..+.....++++++++..+..|.|.+.-..+++.+.+++.. ..|.
T Consensus 292 ~---------------------~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Kie--G~v~ 348 (514)
T KOG2055|consen 292 V---------------------TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIE--GVVS 348 (514)
T ss_pred c---------------------ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeec--cEEe
Confidence 2 1334445554 35667888999999999999999999999999999998874 4799
Q ss_pred eEEEccCCcEEEEECCCCeEEEEEeCCce-eeeeecCCce--eEEEecCCCCEEEEeCCCCeEEEEECCC------CceE
Q 040361 289 KLAASRHGRIVLYGDDDLSLHLFSINGKH-LASSESNGRL--NCLELSACGQFLVCGGDQGQIVVRSMNS------LEVV 359 (413)
Q Consensus 289 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~i--~~~~~s~~~~~l~~~~~dg~i~v~d~~~------~~~~ 359 (413)
.++|+.+++.|++++.+|.|++||++... +.....++.+ ++++.++++.|||+|+..|.|.|||.++ .+++
T Consensus 349 ~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPi 428 (514)
T KOG2055|consen 349 DFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPI 428 (514)
T ss_pred eEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCch
Confidence 99999999999999999999999999544 3344444544 5567779999999999999999999764 4566
Q ss_pred EEecCCCCcEEEEEEccCCeEEE-Ec--CCCeEEEEEecCC
Q 040361 360 RRYSGVGKIITSLAVTPEECFLA-GT--KDGCLLVYSIENR 397 (413)
Q Consensus 360 ~~~~~~~~~v~~~~~~~~~~~l~-~~--~dg~i~vw~~~~~ 397 (413)
..+..-...|+++.|++|+++++ ++ .+..+++-.+.+-
T Consensus 429 k~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~ 469 (514)
T KOG2055|consen 429 KTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSC 469 (514)
T ss_pred hhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccce
Confidence 66766778899999999998886 44 5677998888764
No 151
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.90 E-value=8.7e-22 Score=165.83 Aligned_cols=246 Identities=16% Similarity=0.144 Sum_probs=191.7
Q ss_pred cceeEEEEecCCCC-EEEEeecCCCeEEEEEcCCC----cEEEEeecCCCeEEEEEECC-CCCEEEEccCCCcEEEEEec
Q 040361 133 GSQCFTTMQTPSEN-FLITCGNWENSFQVIALNDG----RVVQSIRQHRDVVSCVAVTT-DGSILATGSYDTTVMVWEVI 206 (413)
Q Consensus 133 ~~~~~~~~~~~~~~-~l~~~g~~d~~i~i~~~~~~----~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~dg~i~iw~~~ 206 (413)
...++++.|.|..+ .++++|...|.|-+||+.+. .-+..+..|..+|.++.|+| +...+++.|.||+|++-|++
T Consensus 186 ~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~ 265 (498)
T KOG4328|consen 186 DRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFE 265 (498)
T ss_pred ccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeec
Confidence 56788999999987 89999999999999999522 23456677999999999999 56789999999999999998
Q ss_pred cccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeE-EEEEeCCCCC
Q 040361 207 RARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRY-VRSLCHPSGS 285 (413)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~ 285 (413)
..... .+..+..-...+..+.|+.+...++.++.=|...+||+++... ...+..+. .
T Consensus 266 ~~i~e---------------------~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~-k 323 (498)
T KOG4328|consen 266 GNISE---------------------EVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHK-K 323 (498)
T ss_pred chhhH---------------------HHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhh-c
Confidence 77521 2223333445667888888888888888888999999998765 44444443 4
Q ss_pred ceeeEEEccC-CcEEEEECCCCeEEEEEeC---Cce---eeeeecCCceeEEEecCCCCEEEEeCCCCeEEEEECC----
Q 040361 286 ALSKLAASRH-GRIVLYGDDDLSLHLFSIN---GKH---LASSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMN---- 354 (413)
Q Consensus 286 ~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~---~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~---- 354 (413)
.|.+++++|. ..++++++.|++.+|||++ ++. +....|...|.++.|||.+-.|++.+.|..|+|||..
T Consensus 324 KI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa 403 (498)
T KOG4328|consen 324 KITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISA 403 (498)
T ss_pred ccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccc
Confidence 8999999994 6789999999999999997 232 4456899999999999998889999999999999983
Q ss_pred CCceEEEecCCCC------cEEEEEEccCCeEE-EEcCCCeEEEEEecCCcccc
Q 040361 355 SLEVVRRYSGVGK------IITSLAVTPEECFL-AGTKDGCLLVYSIENRRTSL 401 (413)
Q Consensus 355 ~~~~~~~~~~~~~------~v~~~~~~~~~~~l-~~~~dg~i~vw~~~~~~~~~ 401 (413)
...+..++. |.. .....+|.|+..++ +|-.-..|-|+|-..++...
T Consensus 404 ~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~ 456 (498)
T KOG4328|consen 404 KDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVC 456 (498)
T ss_pred cCCccceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEee
Confidence 334444443 221 23445799996655 58888889999988877443
No 152
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.4e-21 Score=157.19 Aligned_cols=193 Identities=18% Similarity=0.255 Sum_probs=156.3
Q ss_pred EEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEE
Q 040361 179 VSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVIS 258 (413)
Q Consensus 179 v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s 258 (413)
..|+.|++.|.+|++|..||.|.|||+.+.. ....+.+|..+|++++|+++|+.|++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~-----------------------iar~lsaH~~pi~sl~WS~dgr~Llt 82 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR-----------------------IARMLSAHVRPITSLCWSRDGRKLLT 82 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc-----------------------hhhhhhccccceeEEEecCCCCEeee
Confidence 6899999999999999999999999999887 56778999999999999999999999
Q ss_pred eeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCC-cEEEEECCCCeEEEEEeCCce--eeeee----cCCceeEEE
Q 040361 259 GSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHG-RIVLYGDDDLSLHLFSINGKH--LASSE----SNGRLNCLE 331 (413)
Q Consensus 259 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~--~~~~~----~~~~i~~~~ 331 (413)
++.|..|.+||+..|.+++.+... ++|....|+|.. +..++.-.+..-.+-++.... +.... .+....+..
T Consensus 83 sS~D~si~lwDl~~gs~l~rirf~--spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~ 160 (405)
T KOG1273|consen 83 SSRDWSIKLWDLLKGSPLKRIRFD--SPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGV 160 (405)
T ss_pred ecCCceeEEEeccCCCceeEEEcc--CccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcccccccccccc
Confidence 999999999999999999999875 489999999943 333333333334444444211 11111 122233446
Q ss_pred ecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCC-CcEEEEEEccCCeEE-EEcCCCeEEEEEecC
Q 040361 332 LSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVG-KIITSLAVTPEECFL-AGTKDGCLLVYSIEN 396 (413)
Q Consensus 332 ~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l-~~~~dg~i~vw~~~~ 396 (413)
|.+.|+++++|...|.+.+||..+.+++..++... ..|..+.++..|+++ .-+.|..|+.|+++.
T Consensus 161 fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~d 227 (405)
T KOG1273|consen 161 FDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISD 227 (405)
T ss_pred ccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhh
Confidence 89999999999999999999999999998887655 789999999998766 589999999999873
No 153
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.3e-20 Score=166.09 Aligned_cols=239 Identities=15% Similarity=0.167 Sum_probs=190.6
Q ss_pred cceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccc
Q 040361 133 GSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPE 212 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~ 212 (413)
.+.+-.++|. ++.+|+.+|. +|.|.-||+.+++....+..-.+.|++++.+|.+..++.|+.||.+..++...+...
T Consensus 69 drsIE~L~W~-e~~RLFS~g~-sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~- 145 (691)
T KOG2048|consen 69 DRSIESLAWA-EGGRLFSSGL-SGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKIT- 145 (691)
T ss_pred CCceeeEEEc-cCCeEEeecC-CceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEE-
Confidence 4556677777 6667777676 999999999999999999999999999999999999999999997777766555410
Q ss_pred cccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEe-------CCCCC
Q 040361 213 KRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLC-------HPSGS 285 (413)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-------~~~~~ 285 (413)
-...+...++.|.+++|++++..+++|+.||.|++||..++..++... .....
T Consensus 146 --------------------~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~ 205 (691)
T KOG2048|consen 146 --------------------YKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPT 205 (691)
T ss_pred --------------------EEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCce
Confidence 123345567899999999999999999999999999999988776221 11223
Q ss_pred ceeeEEEccCCcEEEEECCCCeEEEEEeC-Cceeee-eecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCce----E
Q 040361 286 ALSKLAASRHGRIVLYGDDDLSLHLFSIN-GKHLAS-SESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEV----V 359 (413)
Q Consensus 286 ~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~----~ 359 (413)
-|.++.+-. ...|++|...|+|.+||.. +..+.. ..|...|.+++.+++++++++++.|+.|.-|...+.+. .
T Consensus 206 iVWSv~~Lr-d~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~ 284 (691)
T KOG2048|consen 206 IVWSVLFLR-DSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVIN 284 (691)
T ss_pred EEEEEEEee-cCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeee
Confidence 466676664 4579999999999999998 433333 46889999999999999999999999999998776533 2
Q ss_pred EEecCCCCcEEEEEEccCCeEEEEcCCCeEEEEEecC
Q 040361 360 RRYSGVGKIITSLAVTPEECFLAGTKDGCLLVYSIEN 396 (413)
Q Consensus 360 ~~~~~~~~~v~~~~~~~~~~~l~~~~dg~i~vw~~~~ 396 (413)
.....|...|.+++..++ .+++|+.|..+.+-....
T Consensus 285 ~~r~~h~hdvrs~av~~~-~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 285 SRRDLHAHDVRSMAVIEN-ALISGGRDFTLAICSSRE 320 (691)
T ss_pred ccccCCcccceeeeeecc-eEEecceeeEEEEccccc
Confidence 233468888999999977 677899999998877665
No 154
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.7e-21 Score=158.38 Aligned_cols=188 Identities=13% Similarity=0.232 Sum_probs=148.6
Q ss_pred EEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECC--CCCEEEEccCCCcEEEEEeccccccccccccceeecCC
Q 040361 147 FLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTT--DGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPR 224 (413)
Q Consensus 147 ~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 224 (413)
..++++...|.|++||..+++.+..++++...++.+.|.. ....+.+|+.||+|++||++.....
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~------------- 107 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES------------- 107 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhh-------------
Confidence 4555677799999999999999999999999999999976 4678999999999999999887621
Q ss_pred CceeeecCceeeeecCC-CCeEEEEEecCCCEEEEeeC----CCcEEEEEccCCeE-EEEEeCCCCCceeeEEEcc-CCc
Q 040361 225 KDYVIVETPFHILCGHD-DIITCLYVSVELDIVISGSK----DGTCVFHTLREGRY-VRSLCHPSGSALSKLAASR-HGR 297 (413)
Q Consensus 225 ~~~~~~~~~~~~~~~h~-~~i~~~~~~~~~~~l~s~~~----dg~i~vwd~~~~~~-~~~~~~~~~~~v~~~~~~~-~~~ 297 (413)
......++. .+..|++.+-+++.+++|.+ +..|.+||.|..+. ++.+...+...|+++.|+| +.+
T Consensus 108 --------a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pn 179 (376)
T KOG1188|consen 108 --------ARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPN 179 (376)
T ss_pred --------hheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCC
Confidence 233444555 46777877767788888764 67899999998776 7777766677899999999 578
Q ss_pred EEEEECCCCeEEEEEeCCce-----eeeeecCCceeEEEecCCC-CEEEEeCCCCeEEEEECCC
Q 040361 298 IVLYGDDDLSLHLFSINGKH-----LASSESNGRLNCLELSACG-QFLVCGGDQGQIVVRSMNS 355 (413)
Q Consensus 298 ~l~~~~~d~~i~i~d~~~~~-----~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~v~d~~~ 355 (413)
+|++|+.||.|.+||++... +....+...|.++.|..++ +.|.+-+..+...+|+++.
T Consensus 180 lLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~ 243 (376)
T KOG1188|consen 180 LLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELED 243 (376)
T ss_pred eEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccC
Confidence 99999999999999997431 2234566778888887765 4566767777778887754
No 155
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.88 E-value=4e-21 Score=168.25 Aligned_cols=245 Identities=15% Similarity=0.241 Sum_probs=178.0
Q ss_pred cCCCCEEEEeecCCCeEEEEEcCCCcE------EEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEecccccccccc
Q 040361 142 TPSENFLITCGNWENSFQVIALNDGRV------VQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRV 215 (413)
Q Consensus 142 ~~~~~~l~~~g~~d~~i~i~~~~~~~~------~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~ 215 (413)
.+..+.+++.+..||.|.++|...... +.....|...|..+.|.|....|++++.|.++++||+.+....
T Consensus 60 ~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~---- 135 (720)
T KOG0321|consen 60 APNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLV---- 135 (720)
T ss_pred CCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceee----
Confidence 356678888899999999999754322 3455679999999999997788999999999999999988721
Q ss_pred ccceeecCCCceeeecCceeeeecCCCCeEEEEEecCC-CEEEEeeCCCcEEEEEccCCeEE------------------
Q 040361 216 RNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVEL-DIVISGSKDGTCVFHTLREGRYV------------------ 276 (413)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~------------------ 276 (413)
-...+.+|.+.|.+++|.+.. ..|++|+.||.|.|||++-...-
T Consensus 136 -----------------G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~pt 198 (720)
T KOG0321|consen 136 -----------------GGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPT 198 (720)
T ss_pred -----------------cceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCC
Confidence 122478999999999999954 57899999999999999743210
Q ss_pred ---------EEEeCCCCCceee---EEEccCCcEEEEECC-CCeEEEEEeCCceeee-------e---ec---CCceeEE
Q 040361 277 ---------RSLCHPSGSALSK---LAASRHGRIVLYGDD-DLSLHLFSINGKHLAS-------S---ES---NGRLNCL 330 (413)
Q Consensus 277 ---------~~~~~~~~~~v~~---~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~-------~---~~---~~~i~~~ 330 (413)
+....+ ...+.+ +.+..|...|++++. |+.|++||++...... . .+ ...+.++
T Consensus 199 pskp~~kr~~k~kA~-s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL 277 (720)
T KOG0321|consen 199 PSKPLKKRIRKWKAA-SNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNL 277 (720)
T ss_pred CCchhhccccccccc-cCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEE
Confidence 000011 123344 455567788888777 9999999997432211 0 11 2457788
Q ss_pred EecCCCCEEEEeCCCCeEEEEECCCCc--eEEEecCCCC---cEEEEEEccCCeEE-EEcCCCeEEEEEecCCccccccc
Q 040361 331 ELSACGQFLVCGGDQGQIVVRSMNSLE--VVRRYSGVGK---IITSLAVTPEECFL-AGTKDGCLLVYSIENRRTSLPRN 404 (413)
Q Consensus 331 ~~s~~~~~l~~~~~dg~i~v~d~~~~~--~~~~~~~~~~---~v~~~~~~~~~~~l-~~~~dg~i~vw~~~~~~~~~~~~ 404 (413)
.....|.+|++.+.|+.|+.|++.+.. ++..+.++.. .+.+ ..+||++++ +|+.|...++|.+.+.+......
T Consensus 278 ~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks-~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l 356 (720)
T KOG0321|consen 278 ILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKS-ELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL 356 (720)
T ss_pred EecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeee-ecCCCCceEeccCCCcceeeeeecCccCChhhh
Confidence 888889999999999999999998643 3444444322 2222 478888766 59999999999999987665544
Q ss_pred ccccC
Q 040361 405 VKSKA 409 (413)
Q Consensus 405 ~~~~~ 409 (413)
+.|..
T Consensus 357 ~Ght~ 361 (720)
T KOG0321|consen 357 LGHTR 361 (720)
T ss_pred hCcce
Confidence 44443
No 156
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.88 E-value=7e-21 Score=160.42 Aligned_cols=281 Identities=14% Similarity=0.099 Sum_probs=206.2
Q ss_pred CCCCCC--ceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEE
Q 040361 93 QLQSGG--NFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQ 170 (413)
Q Consensus 93 ~~s~~~--~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~ 170 (413)
+|.|.. +.+++|..-|.+.+|+...+.... ........|...|..+.|+|.+...+.+.++||+|++-|++.+....
T Consensus 193 ~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~-d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~ 271 (498)
T KOG4328|consen 193 AFHPTENRKLVAVGDKGGQVGLWNFGTQEKDK-DGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEE 271 (498)
T ss_pred EecccCcceEEEEccCCCcEEEEecCCCCCcc-CceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHH
Confidence 455544 578899999999997643222111 11222334466788999999988777778889999999998765433
Q ss_pred Eee--cCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEE
Q 040361 171 SIR--QHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLY 248 (413)
Q Consensus 171 ~~~--~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~ 248 (413)
.+. .-...+..+.|+.+...++.+..=|...+||.++... ....+.-|...|+.++
T Consensus 272 v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s----------------------~~~~~~lh~kKI~sv~ 329 (498)
T KOG4328|consen 272 VLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGS----------------------EYENLRLHKKKITSVA 329 (498)
T ss_pred HhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCc----------------------cchhhhhhhcccceee
Confidence 333 3556778888988888888888888999999998872 3455667888999999
Q ss_pred EecCC-CEEEEeeCCCcEEEEEccCCeEEEE---EeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeC-----Cceee
Q 040361 249 VSVEL-DIVISGSKDGTCVFHTLREGRYVRS---LCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSIN-----GKHLA 319 (413)
Q Consensus 249 ~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-----~~~~~ 319 (413)
++|-. .+++|++.|++.+|||++..+...+ ...++...|.+..|+|.+..|++.+.|..|++||.. .....
T Consensus 330 ~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~ 409 (498)
T KOG4328|consen 330 LNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLG 409 (498)
T ss_pred cCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccc
Confidence 99954 4789999999999999986543332 122345689999999998889999999999999984 11122
Q ss_pred eeecCC------ceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCC-cEEE-EEEccCCe-EEE-EcCCCeE
Q 040361 320 SSESNG------RLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGK-IITS-LAVTPEEC-FLA-GTKDGCL 389 (413)
Q Consensus 320 ~~~~~~------~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~-~v~~-~~~~~~~~-~l~-~~~dg~i 389 (413)
...|.. ......|.|+..++++|..-..|-|+|-..++.+.++..... .|.+ ..|+|-+. +++ ++..|.|
T Consensus 410 ~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki 489 (498)
T KOG4328|consen 410 TIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKI 489 (498)
T ss_pred eeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceE
Confidence 222322 234568999999999999999999999999988888755433 4544 46999876 666 5577888
Q ss_pred EEEEecC
Q 040361 390 LVYSIEN 396 (413)
Q Consensus 390 ~vw~~~~ 396 (413)
+||.-+.
T Consensus 490 ~vft~k~ 496 (498)
T KOG4328|consen 490 YVFTNKK 496 (498)
T ss_pred EEEecCC
Confidence 8886543
No 157
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=9.8e-20 Score=146.16 Aligned_cols=205 Identities=20% Similarity=0.253 Sum_probs=157.8
Q ss_pred ecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEec-
Q 040361 173 RQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSV- 251 (413)
Q Consensus 173 ~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~- 251 (413)
.+|.+-|.++.|.+-|+++++|+.|++++|||......... +....+.|.+.|..+.|-+
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~-------------------~Ts~Wrah~~Si~rV~WAhP 70 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWS-------------------CTSSWRAHDGSIWRVVWAHP 70 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceE-------------------EeeeEEecCCcEEEEEecCc
Confidence 36899999999999999999999999999999865553322 3456788999999999965
Q ss_pred -CCCEEEEeeCCCcEEEEEccCC-------e--EEEEEeCCCCCceeeEEEccC--CcEEEEECCCCeEEEEEeCCc-ee
Q 040361 252 -ELDIVISGSKDGTCVFHTLREG-------R--YVRSLCHPSGSALSKLAASRH--GRIVLYGDDDLSLHLFSINGK-HL 318 (413)
Q Consensus 252 -~~~~l~s~~~dg~i~vwd~~~~-------~--~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~-~~ 318 (413)
-|+.+++++.|+++.||.-... + ...++. .....|+.+.|.|. |-.+++++.||.++||+.-.- .+
T Consensus 71 EfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~-DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nL 149 (361)
T KOG2445|consen 71 EFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLV-DSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNL 149 (361)
T ss_pred cccceEEEEecCCceeeeeecccccccccceeEEEEEee-cCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcccc
Confidence 4789999999999999975211 1 122333 33568999999994 788999999999999987421 11
Q ss_pred ee--------------eecCCceeEEEecCC---CCEEEEeCCC-----CeEEEEECCCC----ceEEEecCCCCcEEEE
Q 040361 319 AS--------------SESNGRLNCLELSAC---GQFLVCGGDQ-----GQIVVRSMNSL----EVVRRYSGVGKIITSL 372 (413)
Q Consensus 319 ~~--------------~~~~~~i~~~~~s~~---~~~l~~~~~d-----g~i~v~d~~~~----~~~~~~~~~~~~v~~~ 372 (413)
.. ..+..+..|+.|+|. ..+|++|+.+ +.++||..... ..+.++.+|.++|+++
T Consensus 150 s~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di 229 (361)
T KOG2445|consen 150 SQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDI 229 (361)
T ss_pred ccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceee
Confidence 10 124567789999975 4688888876 57889976543 3556788999999999
Q ss_pred EEccC-C---eEE-EEcCCCeEEEEEecCCc
Q 040361 373 AVTPE-E---CFL-AGTKDGCLLVYSIENRR 398 (413)
Q Consensus 373 ~~~~~-~---~~l-~~~~dg~i~vw~~~~~~ 398 (413)
+|.|+ | .++ +++.|| |+||+++..+
T Consensus 230 ~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~ 259 (361)
T KOG2445|consen 230 SWAPNIGRSYHLLAVATKDG-VRIFKVKVAR 259 (361)
T ss_pred eeccccCCceeeEEEeecCc-EEEEEEeecc
Confidence 99998 5 355 499999 9999998643
No 158
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.87 E-value=2.3e-20 Score=155.13 Aligned_cols=259 Identities=18% Similarity=0.191 Sum_probs=179.1
Q ss_pred cceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCc---------EEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEE
Q 040361 133 GSQCFTTMQTPSENFLITCGNWENSFQVIALNDGR---------VVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVW 203 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~---------~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw 203 (413)
+..+..+.+..++...+++|..|..|+||-++.+. .+..+..|..+|+++.|+|+|+.|++|+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 56677777777776455555559999999875421 235667899999999999999999999999999999
Q ss_pred EeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCC
Q 040361 204 EVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPS 283 (413)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 283 (413)
....-...... .+.............+.+|...|..++|+|+++++++++.|..+++||+..|+....+..+
T Consensus 93 k~~~~~~~~~d-------~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh- 164 (434)
T KOG1009|consen 93 KQGDVRIFDAD-------TEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDH- 164 (434)
T ss_pred EecCcCCcccc-------chhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccc-
Confidence 87642110000 0000000011135667889999999999999999999999999999999999999888765
Q ss_pred CCceeeEEEccCCcEEEEECCCCeEEEEEeCCceeee---------------------eecC----CceeEEEecCCCCE
Q 040361 284 GSALSKLAASRHGRIVLYGDDDLSLHLFSINGKHLAS---------------------SESN----GRLNCLELSACGQF 338 (413)
Q Consensus 284 ~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~---------------------~~~~----~~i~~~~~s~~~~~ 338 (413)
...+..++|.|-++++++-+.|...+.++++-+.+.. ..|+ .-...++|+|+|.+
T Consensus 165 ~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~l 244 (434)
T KOG1009|consen 165 EHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSL 244 (434)
T ss_pred ccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcE
Confidence 5588999999999999988888766666554211110 0010 11233455555554
Q ss_pred EEEeC---------------------------------------------------------------------CCCeEE
Q 040361 339 LVCGG---------------------------------------------------------------------DQGQIV 349 (413)
Q Consensus 339 l~~~~---------------------------------------------------------------------~dg~i~ 349 (413)
+++.+ ..+.|+
T Consensus 245 lvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svy 324 (434)
T KOG1009|consen 245 LVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVY 324 (434)
T ss_pred EEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEE
Confidence 44322 123455
Q ss_pred EEECCCCceEEEec-CCCCcEEEEEEccCCeEE-EEcCCCeEEEEEecCCcc
Q 040361 350 VRSMNSLEVVRRYS-GVGKIITSLAVTPEECFL-AGTKDGCLLVYSIENRRT 399 (413)
Q Consensus 350 v~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l-~~~~dg~i~vw~~~~~~~ 399 (413)
+||.++.+++.... -|-..++.++|++||.++ ..+.||...+-.++..+.
T Consensus 325 vydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 325 VYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred EeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhc
Confidence 66655555544332 366789999999998766 589999988877776543
No 159
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.87 E-value=1e-19 Score=150.73 Aligned_cols=210 Identities=15% Similarity=0.197 Sum_probs=171.6
Q ss_pred CCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCC-------cEEEEeecCCCeEEEEEECCC-CCEEEEcc
Q 040361 124 SPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDG-------RVVQSIRQHRDVVSCVAVTTD-GSILATGS 195 (413)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~-------~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s 195 (413)
.......+|...|+.+.|.|-++..+++|+.|.+|.||.+..+ +.+..+.+|...|--++|+|. .+.|++++
T Consensus 72 ~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag 151 (472)
T KOG0303|consen 72 ASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAG 151 (472)
T ss_pred CCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhcc
Confidence 3344455678899999999999999999999999999998653 456788999999999999995 56789999
Q ss_pred CCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeE
Q 040361 196 YDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRY 275 (413)
Q Consensus 196 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 275 (413)
.|.+|.+|++.++. .+..+. |.+.|+++.|+.+|.++++.+.|..|++||.++++.
T Consensus 152 ~Dn~v~iWnv~tge-----------------------ali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~ 207 (472)
T KOG0303|consen 152 SDNTVSIWNVGTGE-----------------------ALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTV 207 (472)
T ss_pred CCceEEEEeccCCc-----------------------eeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcE
Confidence 99999999999998 455555 999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCceeeEEEccCCcEEEEEC---CCCeEEEEEeCC--ceee--eeecCCceeEEEecCCCCEEE-EeCCCCe
Q 040361 276 VRSLCHPSGSALSKLAASRHGRIVLYGD---DDLSLHLFSING--KHLA--SSESNGRLNCLELSACGQFLV-CGGDQGQ 347 (413)
Q Consensus 276 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~i~d~~~--~~~~--~~~~~~~i~~~~~s~~~~~l~-~~~~dg~ 347 (413)
+..-..|.+.......|-.++.++.+|. .+.++-+||... ..+. .......|.---|.+|.+.+. +|-.|+.
T Consensus 208 v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~ 287 (472)
T KOG0303|consen 208 VSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSS 287 (472)
T ss_pred eeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcc
Confidence 9888777777777788888998555553 467899999862 2222 234445566666788877654 5667999
Q ss_pred EEEEECCCCc
Q 040361 348 IVVRSMNSLE 357 (413)
Q Consensus 348 i~v~d~~~~~ 357 (413)
|+.|.+.+..
T Consensus 288 IRYyEit~d~ 297 (472)
T KOG0303|consen 288 IRYFEITNEP 297 (472)
T ss_pred eEEEEecCCC
Confidence 9999987654
No 160
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=4.8e-21 Score=165.53 Aligned_cols=254 Identities=16% Similarity=0.200 Sum_probs=180.5
Q ss_pred cceeEEEEecCCCCEEEEeecCCCeEEEEEcCC--------CcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEE
Q 040361 133 GSQCFTTMQTPSENFLITCGNWENSFQVIALND--------GRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWE 204 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~--------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~ 204 (413)
+..|+.....|...-.+++++.||.+.+|+++. -+.+.++++|.++|.|+++.+++..+++|+.||+|+.|+
T Consensus 293 ~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~ 372 (577)
T KOG0642|consen 293 HDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWN 372 (577)
T ss_pred chhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeec
Confidence 334444444444444455577799999999932 256788999999999999999999999999999999998
Q ss_pred eccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCC
Q 040361 205 VIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSG 284 (413)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 284 (413)
+..... ..... -.......+.||.+.|+.+++++....|++++.||+++.|+...... ..+..+..
T Consensus 373 ~p~n~d-p~ds~------------dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e 438 (577)
T KOG0642|consen 373 LPPNQD-PDDSY------------DPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKE 438 (577)
T ss_pred cCCCCC-ccccc------------CcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccc
Confidence 763221 10000 00113567889999999999999988999999999999999876655 34432221
Q ss_pred -CceeeEEEccCC-cEEEEECCCCeEEEEEeC-Cceeeee--------ecCCceeEEEecCCCCEEEEeCCCCeEEEEEC
Q 040361 285 -SALSKLAASRHG-RIVLYGDDDLSLHLFSIN-GKHLASS--------ESNGRLNCLELSACGQFLVCGGDQGQIVVRSM 353 (413)
Q Consensus 285 -~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~-~~~~~~~--------~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~ 353 (413)
....++.+-... .+.++...-+.--++++. ...+... .....+..+...|.+.+.+++..|+.|+++|.
T Consensus 439 ~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn 518 (577)
T KOG0642|consen 439 HGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDN 518 (577)
T ss_pred cCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccc
Confidence 123444443322 223333222222233333 1222211 11245777889999999999999999999999
Q ss_pred CCCceEEEecCCCCcEEEEEEccCCeEE-EEcCCCeEEEEEecCCccc
Q 040361 354 NSLEVVRRYSGVGKIITSLAVTPEECFL-AGTKDGCLLVYSIENRRTS 400 (413)
Q Consensus 354 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~dg~i~vw~~~~~~~~ 400 (413)
.+++++.....|...++++++.|+|-++ +++.|+.+++|++......
T Consensus 519 ~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~ 566 (577)
T KOG0642|consen 519 KTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCV 566 (577)
T ss_pred cccccchheeeccceecceeecCCCceEEeecCCceeehhhccchhee
Confidence 9999999999999999999999997555 7999999999999765443
No 161
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=8.2e-19 Score=136.40 Aligned_cols=268 Identities=12% Similarity=0.122 Sum_probs=187.0
Q ss_pred CCCCCCceeeecCCCCccccCCCcCC-----CcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCc
Q 040361 93 QLQSGGNFTFSGSQDPFFGVGADILS-----PRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGR 167 (413)
Q Consensus 93 ~~s~~~~~l~~~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~ 167 (413)
++||.+++++.|..+|.+.+.....- ..+-..++...-.|...+..++|. +..|+++| ||.|+-|..+...
T Consensus 17 a~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g--dG~V~gw~W~E~~ 92 (325)
T KOG0649|consen 17 AISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG--DGLVYGWEWNEEE 92 (325)
T ss_pred hhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc--CceEEEeeehhhh
Confidence 56778888888888887766532110 011112222334567778888776 56677666 8999999875432
Q ss_pred E------EE--EeecCC-----CeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCce
Q 040361 168 V------VQ--SIRQHR-----DVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPF 234 (413)
Q Consensus 168 ~------~~--~~~~h~-----~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (413)
. +. ....|. ..|+++...|..+-+++++.|+.++.||+++++ ..
T Consensus 93 es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~-----------------------i~ 149 (325)
T KOG0649|consen 93 ESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGR-----------------------IQ 149 (325)
T ss_pred hhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCE-----------------------EE
Confidence 2 11 111232 468999999988888888899999999999998 67
Q ss_pred eeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCC---------CCceeeEEEccCCcEEEEECCC
Q 040361 235 HILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPS---------GSALSKLAASRHGRIVLYGDDD 305 (413)
Q Consensus 235 ~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~l~~~~~d 305 (413)
..+++|++.|.++.--.....+++|++||++++||+++++.+..+.... +..|.+++ -+...+++|+.
T Consensus 150 r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGgG- 226 (325)
T KOG0649|consen 150 REYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGGG- 226 (325)
T ss_pred EEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEecCC-
Confidence 8899999999999986666679999999999999999999988775322 22333343 44566777664
Q ss_pred CeEEEEEeCC-ceeeeeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEccC-CeEEE-
Q 040361 306 LSLHLFSING-KHLASSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPE-ECFLA- 382 (413)
Q Consensus 306 ~~i~i~d~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~- 382 (413)
..+.+|.++. .....+....++..+.| +.+.+++++..+.|.-|.+. |.+-...+......++..|+.. -++++
T Consensus 227 p~lslwhLrsse~t~vfpipa~v~~v~F--~~d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ 303 (325)
T KOG0649|consen 227 PKLSLWHLRSSESTCVFPIPARVHLVDF--VDDCVLIGGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPIKFISI 303 (325)
T ss_pred CceeEEeccCCCceEEEecccceeEeee--ecceEEEeccccceeeeeec-cEEEEeccCCccceeeecccCCceEEEEe
Confidence 4799999994 44445677888889988 45678888888889999875 4555555544455666666655 36775
Q ss_pred EcCCCeEEEEE
Q 040361 383 GTKDGCLLVYS 393 (413)
Q Consensus 383 ~~~dg~i~vw~ 393 (413)
++....+.++.
T Consensus 304 ag~s~~~~i~~ 314 (325)
T KOG0649|consen 304 AGFSNKLHILK 314 (325)
T ss_pred cccceeeeeee
Confidence 67777777653
No 162
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.86 E-value=2.8e-20 Score=146.13 Aligned_cols=260 Identities=17% Similarity=0.196 Sum_probs=183.1
Q ss_pred ecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEee-cCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccc
Q 040361 132 LGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIR-QHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARA 210 (413)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~ 210 (413)
+++.+.++.|-.++. +.+|...|.|++|++++.+....++ .|...|+.+.-.|+ ..|.+-+.|+.+.+|++..+..
T Consensus 13 ~~~~v~s~~fqa~~r--L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~ 89 (323)
T KOG0322|consen 13 HSSSVTSVLFQANER--LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAF 89 (323)
T ss_pred ccchheehhhccchh--hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcce
Confidence 455666666655554 4447779999999999999988888 57889999999887 5788999999999999976331
Q ss_pred cc--------------cc-----cccceeecCCCceee-----e--cCceeee----ecCCCCeEEEEEec-CCC--EEE
Q 040361 211 PE--------------KR-----VRNMQIEAPRKDYVI-----V--ETPFHIL----CGHDDIITCLYVSV-ELD--IVI 257 (413)
Q Consensus 211 ~~--------------~~-----~~~~~~~~~~~~~~~-----~--~~~~~~~----~~h~~~i~~~~~~~-~~~--~l~ 257 (413)
.. .. ..+.....+...... . ...+... .+..+.+.|..+.. .+. +++
T Consensus 90 i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lll 169 (323)
T KOG0322|consen 90 ISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLL 169 (323)
T ss_pred EEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEE
Confidence 10 00 000001111000000 0 0011111 12334566666433 222 567
Q ss_pred EeeCCCcEEEEEccCCeEEEEEe---------CCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCc--ee-e---eee
Q 040361 258 SGSKDGTCVFHTLREGRYVRSLC---------HPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGK--HL-A---SSE 322 (413)
Q Consensus 258 s~~~dg~i~vwd~~~~~~~~~~~---------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~~-~---~~~ 322 (413)
+|.++|.+.+||+.++..+..+. ..+..+|.++.+.+.-..=++|+.+..+..|+++-. .+ . ..-
T Consensus 170 aGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~l 249 (323)
T KOG0322|consen 170 AGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITL 249 (323)
T ss_pred EeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEe
Confidence 88899999999999885443332 123457889999876666677888888999998722 11 1 112
Q ss_pred cCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEccCCeEE-EEcCCCeEEEEEe
Q 040361 323 SNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFL-AGTKDGCLLVYSI 394 (413)
Q Consensus 323 ~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~dg~i~vw~~ 394 (413)
.+-.+..+.+-||++.+|+++.||.||||..++.+++..++-|++.|++++|+|+..++ +++.|++|.+|++
T Consensus 250 knpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 250 KNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred cCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 34457889999999999999999999999999999999999999999999999995555 6999999999987
No 163
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.86 E-value=4.3e-18 Score=156.89 Aligned_cols=278 Identities=22% Similarity=0.429 Sum_probs=211.4
Q ss_pred cCCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceec-ceeEEEEe-cCCCC-EEEEeecCCCeEEEEEcCC-Cc
Q 040361 92 TQLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELG-SQCFTTMQ-TPSEN-FLITCGNWENSFQVIALND-GR 167 (413)
Q Consensus 92 ~~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~-~l~~~g~~d~~i~i~~~~~-~~ 167 (413)
..+.+.+..++.++.|+.+.+|...-...... ...... ..+..... .+++. .++..+..|+.+.+|+... ..
T Consensus 71 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 146 (466)
T COG2319 71 IAFSPDGELLLSGSSDGTIKLWDLDNGEKLIK----SLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGK 146 (466)
T ss_pred EEECCCCcEEEEecCCCcEEEEEcCCCceeEE----EEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCe
Confidence 34677788888888888888864322220111 011101 13344444 67777 4444455599999999988 78
Q ss_pred EEEEeecCCCeEEEEEECCCCCEEEEccC-CCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEE
Q 040361 168 VVQSIRQHRDVVSCVAVTTDGSILATGSY-DTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITC 246 (413)
Q Consensus 168 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 246 (413)
....+..|...|..++|+|++..+++++. |+.+++|++.... .+..+.+|...|.+
T Consensus 147 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~v~~ 203 (466)
T COG2319 147 LIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK-----------------------PLSTLAGHTDPVSS 203 (466)
T ss_pred EEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc-----------------------eEEeeccCCCceEE
Confidence 88899999999999999999999999986 9999999998754 56777889999999
Q ss_pred EEEecCCC-EEEEeeCCCcEEEEEccCCeEEE-EEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCce--eee-e
Q 040361 247 LYVSVELD-IVISGSKDGTCVFHTLREGRYVR-SLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKH--LAS-S 321 (413)
Q Consensus 247 ~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~-~ 321 (413)
++|+|++. .+++++.|+.+++||...+.... .+..+.. .. ...|++++..+++++.|+.+++|++.... +.. .
T Consensus 204 ~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 281 (466)
T COG2319 204 LAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSD-SV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLS 281 (466)
T ss_pred EEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCc-ce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEe
Confidence 99999987 55666999999999998787777 4555433 32 22899999889999999999999998332 222 3
Q ss_pred ecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEec--CCCCcEEEEEEccC-CeEEEE-cCCCeEEEEEecCC
Q 040361 322 ESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYS--GVGKIITSLAVTPE-ECFLAG-TKDGCLLVYSIENR 397 (413)
Q Consensus 322 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~--~~~~~v~~~~~~~~-~~~l~~-~~dg~i~vw~~~~~ 397 (413)
.+...+.++.|.|++..+++++.|+.+.+||........... .|...+..+.|.++ ..++.+ ..|+.+.+|++...
T Consensus 282 ~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 361 (466)
T COG2319 282 GHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTG 361 (466)
T ss_pred cCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCC
Confidence 567899999999988888888888999999999887776665 78778999999433 244444 68899999999887
Q ss_pred c
Q 040361 398 R 398 (413)
Q Consensus 398 ~ 398 (413)
.
T Consensus 362 ~ 362 (466)
T COG2319 362 K 362 (466)
T ss_pred c
Confidence 6
No 164
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.85 E-value=1.2e-19 Score=144.49 Aligned_cols=245 Identities=14% Similarity=0.215 Sum_probs=184.8
Q ss_pred ecceeEEEEecCCCCEEEEeecCC-------CeEEEEEcCCC---------cEEEEee-cCCCeEEEEEECCCCCEEEEc
Q 040361 132 LGSQCFTTMQTPSENFLITCGNWE-------NSFQVIALNDG---------RVVQSIR-QHRDVVSCVAVTTDGSILATG 194 (413)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~g~~d-------~~i~i~~~~~~---------~~~~~~~-~h~~~v~~~~~~~~~~~l~s~ 194 (413)
+.+++..++.+|.+..++++...+ ..+.||.+... +++..+. .+-+.|.|+.|.|++..|++-
T Consensus 62 ~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm 141 (370)
T KOG1007|consen 62 HAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASM 141 (370)
T ss_pred CCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEe
Confidence 457788888899988888876642 25678987532 2334443 456799999999999999887
Q ss_pred cCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEec--CCCEEEEeeCCCcEEEEEccC
Q 040361 195 SYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSV--ELDIVISGSKDGTCVFHTLRE 272 (413)
Q Consensus 195 s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~--~~~~l~s~~~dg~i~vwd~~~ 272 (413)
. |..|.+|+++.+......+ +...-.+|....++-+|+| +++.+++. .|+++..||+++
T Consensus 142 ~-dn~i~l~~l~ess~~vaev-----------------~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT 202 (370)
T KOG1007|consen 142 D-DNNIVLWSLDESSKIVAEV-----------------LSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRT 202 (370)
T ss_pred c-cCceEEEEcccCcchheee-----------------cccccccccceecccccCCCCccceEEEe-CCCcEEEEEccc
Confidence 6 7899999998776211100 1111123666788889998 77777766 489999999999
Q ss_pred CeEEEEEeCCCCCceeeEEEccCCc-EEEEECCCCeEEEEEeCCce--eee-eecCCceeEEEecCC-CCEEEEeCCCCe
Q 040361 273 GRYVRSLCHPSGSALSKLAASRHGR-IVLYGDDDLSLHLFSINGKH--LAS-SESNGRLNCLELSAC-GQFLVCGGDQGQ 347 (413)
Q Consensus 273 ~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~--~~~-~~~~~~i~~~~~s~~-~~~l~~~~~dg~ 347 (413)
......+...++..+..+.|+|+.+ +|++++.||.|++||.+... +.. ..|...+.++.|+|. .+++++|+.|..
T Consensus 203 ~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~ 282 (370)
T KOG1007|consen 203 MKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSA 282 (370)
T ss_pred hhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCce
Confidence 9999999888888999999999865 57788999999999998332 222 468899999999997 468889999999
Q ss_pred EEEEECCCC-----------------------------ceEEEecCCCCcEEEEEEccCC--eEEEEcCCCeEEEEEec
Q 040361 348 IVVRSMNSL-----------------------------EVVRRYSGVGKIITSLAVTPEE--CFLAGTKDGCLLVYSIE 395 (413)
Q Consensus 348 i~v~d~~~~-----------------------------~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~dg~i~vw~~~ 395 (413)
|.+|...+- ..+.++..|.+.|.+++|+.-. .|++-+.||.+.|=++.
T Consensus 283 V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 283 VNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred eEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 999965320 1234667799999999999764 34458999999886654
No 165
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.85 E-value=8.9e-20 Score=151.12 Aligned_cols=210 Identities=19% Similarity=0.280 Sum_probs=166.1
Q ss_pred EeecCCCeEEEEEECC-CCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEE
Q 040361 171 SIRQHRDVVSCVAVTT-DGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYV 249 (413)
Q Consensus 171 ~~~~h~~~v~~~~~~~-~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~ 249 (413)
.+.+|.++|..++|+| +...|++||+|.+|.||++-.+...... ..++..|.+|...|--++|
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~l----------------tepvv~L~gH~rrVg~V~w 139 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDL----------------TEPVVELYGHQRRVGLVQW 139 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCc----------------ccceEEEeecceeEEEEee
Confidence 4568999999999999 6778999999999999999765421111 1368889999999999999
Q ss_pred ecC-CCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCceeee-e-ecC-C
Q 040361 250 SVE-LDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKHLAS-S-ESN-G 325 (413)
Q Consensus 250 ~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~-~~~-~ 325 (413)
+|. .+.|++++.|..|.+||+.+|+.+.++.+ ...|.++.|+.+|.++++.+.|..|++||.+...+.. . .|. .
T Consensus 140 HPtA~NVLlsag~Dn~v~iWnv~tgeali~l~h--pd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~ 217 (472)
T KOG0303|consen 140 HPTAPNVLLSAGSDNTVSIWNVGTGEALITLDH--PDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGA 217 (472)
T ss_pred cccchhhHhhccCCceEEEEeccCCceeeecCC--CCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCC
Confidence 995 46889999999999999999999988873 4589999999999999999999999999999554443 2 333 3
Q ss_pred ceeEEEecCCCCEEEEeC---CCCeEEEEECCCCce---EEEecCCCCcEEEEEEccCCe--EEEEcCCCeEEEEEecCC
Q 040361 326 RLNCLELSACGQFLVCGG---DQGQIVVRSMNSLEV---VRRYSGVGKIITSLAVTPEEC--FLAGTKDGCLLVYSIENR 397 (413)
Q Consensus 326 ~i~~~~~s~~~~~l~~~~---~dg~i~v~d~~~~~~---~~~~~~~~~~v~~~~~~~~~~--~l~~~~dg~i~vw~~~~~ 397 (413)
....+.|-.+|.++.+|- .+..+-+||..+.+. +.++. .++.|.---|.+|.. ||+|-.|+.|+.|.+.+.
T Consensus 218 k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 218 KPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred CcceeEEeccCceeeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence 455677888888665553 467899999876543 23443 355677777888854 557889999999999886
Q ss_pred cc
Q 040361 398 RT 399 (413)
Q Consensus 398 ~~ 399 (413)
.+
T Consensus 297 ~P 298 (472)
T KOG0303|consen 297 PP 298 (472)
T ss_pred Cc
Confidence 53
No 166
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=7.1e-20 Score=159.38 Aligned_cols=268 Identities=13% Similarity=0.203 Sum_probs=201.1
Q ss_pred CCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCc------
Q 040361 94 LQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGR------ 167 (413)
Q Consensus 94 ~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~------ 167 (413)
..|.|.+|++|+.||++++|- ... .--.....+.+.+.+++|.|.++.-+++...+..+.|.+..-|.
T Consensus 408 vdp~G~wlasGsdDGtvriWE----i~T--gRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~ 481 (733)
T KOG0650|consen 408 VDPSGEWLASGSDDGTVRIWE----IAT--GRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGP 481 (733)
T ss_pred ecCCcceeeecCCCCcEEEEE----eec--ceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcc
Confidence 367899999999999999963 211 11123445577899999999877544433335555555432110
Q ss_pred -------------------------------EEEEeecCCCeEEEEEECCCCCEEEEccC---CCcEEEEEecccccccc
Q 040361 168 -------------------------------VVQSIRQHRDVVSCVAVTTDGSILATGSY---DTTVMVWEVIRARAPEK 213 (413)
Q Consensus 168 -------------------------------~~~~~~~h~~~v~~~~~~~~~~~l~s~s~---dg~i~iw~~~~~~~~~~ 213 (413)
-++..-.|...|..+.|+..|.||++... ...|.|+++....
T Consensus 482 t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~---- 557 (733)
T KOG0650|consen 482 TKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRK---- 557 (733)
T ss_pred hhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccccc----
Confidence 01122247889999999999999998755 4578999987765
Q ss_pred ccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEc
Q 040361 214 RVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAAS 293 (413)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~ 293 (413)
...-|....+.|.++.|+|...+|+.++ ...|++||+..+..+..+... ...|..++++
T Consensus 558 -------------------sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg-~kwiS~msih 616 (733)
T KOG0650|consen 558 -------------------SQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTG-SKWISSMSIH 616 (733)
T ss_pred -------------------ccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcC-Ceeeeeeeec
Confidence 2334555667899999999988888877 467999999887777766544 3478999999
Q ss_pred cCCcEEEEECCCCeEEEEEeC--Cceeee-eecCCceeEEEecCCCCEEEEeCCCCeEEEEECC-------C--CceEEE
Q 040361 294 RHGRIVLYGDDDLSLHLFSIN--GKHLAS-SESNGRLNCLELSACGQFLVCGGDQGQIVVRSMN-------S--LEVVRR 361 (413)
Q Consensus 294 ~~~~~l~~~~~d~~i~i~d~~--~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~-------~--~~~~~~ 361 (413)
|.|..|++++.|+.+..||+. .+.... ..|...+++++|++.-.++++|+.||.+.||.-. + --+++.
T Consensus 617 p~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~ 696 (733)
T KOG0650|consen 617 PNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKR 696 (733)
T ss_pred CCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeee
Confidence 999999999999999999998 333333 3578889999999999999999999999988432 1 124577
Q ss_pred ecCCCCc----EEEEEEccCCe-EEEEcCCCeEEEE
Q 040361 362 YSGVGKI----ITSLAVTPEEC-FLAGTKDGCLLVY 392 (413)
Q Consensus 362 ~~~~~~~----v~~~~~~~~~~-~l~~~~dg~i~vw 392 (413)
+.+|... |..+.|+|..- +++++.||+|++|
T Consensus 697 L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 697 LRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 7888765 89999999964 5689999999998
No 167
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.85 E-value=4.4e-19 Score=143.43 Aligned_cols=228 Identities=20% Similarity=0.287 Sum_probs=171.9
Q ss_pred CCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEc-CCCcEEEE
Q 040361 93 QLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIAL-NDGRVVQS 171 (413)
Q Consensus 93 ~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~-~~~~~~~~ 171 (413)
...|+..+.++.++|..+.+|+......+.......+...-...+++.|+|||.+|++ |. ...|+++|+ ..|+....
T Consensus 118 s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfa-Gy-krcirvFdt~RpGr~c~v 195 (406)
T KOG2919|consen 118 SDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFA-GY-KRCIRVFDTSRPGRDCPV 195 (406)
T ss_pred cCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEee-cc-cceEEEeeccCCCCCCcc
Confidence 3578889999999999999986433222222222222222345678999999999987 66 889999998 44432211
Q ss_pred ---e----ecCCCeEEEEEECC-CCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCC
Q 040361 172 ---I----RQHRDVVSCVAVTT-DGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDI 243 (413)
Q Consensus 172 ---~----~~h~~~v~~~~~~~-~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 243 (413)
+ .+..+.|.|++|+| +...++.|+...++-||.-.... ++..+.+|.+.
T Consensus 196 y~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~-----------------------pl~llggh~gG 252 (406)
T KOG2919|consen 196 YTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRR-----------------------PLQLLGGHGGG 252 (406)
T ss_pred hhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCC-----------------------ceeeecccCCC
Confidence 1 23478899999999 56689999999999999887776 78899999999
Q ss_pred eEEEEEecCCCEEEEeeC-CCcEEEEEccCC-eEEEEEeCCCCCceee--EEEccCCcEEEEECCCCeEEEEEeC--Cce
Q 040361 244 ITCLYVSVELDIVISGSK-DGTCVFHTLREG-RYVRSLCHPSGSALSK--LAASRHGRIVLYGDDDLSLHLFSIN--GKH 317 (413)
Q Consensus 244 i~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~-~~~~~~~~~~~~~v~~--~~~~~~~~~l~~~~~d~~i~i~d~~--~~~ 317 (413)
|+.+.|.++|+.|.+|.+ |-.|..||++.. .++..+..+.+..-.. ....|++++|++|+.||.|++||++ +..
T Consensus 253 vThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~ 332 (406)
T KOG2919|consen 253 VTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNE 332 (406)
T ss_pred eeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCc
Confidence 999999999999999886 678999999854 4555665543322233 4556889999999999999999998 443
Q ss_pred ee-eeecCCceeEEEecCCCCEEEEeCCC
Q 040361 318 LA-SSESNGRLNCLELSACGQFLVCGGDQ 345 (413)
Q Consensus 318 ~~-~~~~~~~i~~~~~s~~~~~l~~~~~d 345 (413)
+. ...+...++.++++|--.++++++..
T Consensus 333 ~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 333 VSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred ccccccccccccceecCcccceeeeccCc
Confidence 33 34677889999999998888887654
No 168
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.85 E-value=3.7e-18 Score=151.20 Aligned_cols=242 Identities=13% Similarity=0.151 Sum_probs=163.2
Q ss_pred cceeEEEEecCCCCEEEEeecCCCeEEEEEcC-CCcE--EEEeecCCCeEEEEEECCCCCEEEEccC-CCcEEEEEeccc
Q 040361 133 GSQCFTTMQTPSENFLITCGNWENSFQVIALN-DGRV--VQSIRQHRDVVSCVAVTTDGSILATGSY-DTTVMVWEVIRA 208 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~-~~~~--~~~~~~h~~~v~~~~~~~~~~~l~s~s~-dg~i~iw~~~~~ 208 (413)
......+.++|++++|++++..++.|.+|+++ +++. ..... ..+....++|+|++++|++++. ++.|.+|++++.
T Consensus 34 ~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~ 112 (330)
T PRK11028 34 PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKD 112 (330)
T ss_pred CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCC
Confidence 34456678899999988876668899999996 3443 22222 3345678999999999988764 889999999643
Q ss_pred cccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEE-eeCCCcEEEEEccCCeEEE-----EEeCC
Q 040361 209 RAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVIS-GSKDGTCVFHTLREGRYVR-----SLCHP 282 (413)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s-~~~dg~i~vwd~~~~~~~~-----~~~~~ 282 (413)
..... .+..+. +.....+++++|+++++++ ...++.|.+||+.+...+. ....+
T Consensus 113 g~~~~-------------------~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~ 172 (330)
T PRK11028 113 GIPVA-------------------PIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV 172 (330)
T ss_pred CCCCC-------------------ceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC
Confidence 21100 112222 2234567889999988754 4456999999997643221 11222
Q ss_pred CCCceeeEEEccCCcEEEEECC-CCeEEEEEeCC--ceeee---ee-------cCCceeEEEecCCCCEEEEeCC-CCeE
Q 040361 283 SGSALSKLAASRHGRIVLYGDD-DLSLHLFSING--KHLAS---SE-------SNGRLNCLELSACGQFLVCGGD-QGQI 348 (413)
Q Consensus 283 ~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~d~~~--~~~~~---~~-------~~~~i~~~~~s~~~~~l~~~~~-dg~i 348 (413)
.+.....++|+|++++++++.. ++.|.+|+++. ..+.. .. .......+.++|+|++++++.. ++.|
T Consensus 173 ~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I 252 (330)
T PRK11028 173 EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLI 252 (330)
T ss_pred CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeE
Confidence 3456788999999999988765 89999999972 22211 11 1112346889999999999864 7899
Q ss_pred EEEECCCCc----eEEEecCCCCcEEEEEEccCCeEE-E-EcCCCeEEEEEecC
Q 040361 349 VVRSMNSLE----VVRRYSGVGKIITSLAVTPEECFL-A-GTKDGCLLVYSIEN 396 (413)
Q Consensus 349 ~v~d~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l-~-~~~dg~i~vw~~~~ 396 (413)
.+|++.... .+..... ......+.++|||++| + ...+++|.+|+++.
T Consensus 253 ~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 253 SVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred EEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 999986432 2232222 2345678999998655 4 44589999999864
No 169
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=3.9e-19 Score=154.82 Aligned_cols=259 Identities=14% Similarity=0.214 Sum_probs=188.1
Q ss_pred eecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCC--EEEEccCCCcEEEEEeccc
Q 040361 131 ELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGS--ILATGSYDTTVMVWEVIRA 208 (413)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~s~dg~i~iw~~~~~ 208 (413)
+|.+.+.++...|.|..|+. |+.||+|+||.+.+|.++.++. -.+.|.|++|+|.+. .|+++-. ..+.+-+..-+
T Consensus 398 GHtg~Vr~iSvdp~G~wlas-GsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~-~~~~ivnp~~G 474 (733)
T KOG0650|consen 398 GHTGLVRSISVDPSGEWLAS-GSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVG-ECVLIVNPIFG 474 (733)
T ss_pred ccCCeEEEEEecCCcceeee-cCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEec-CceEEeCcccc
Confidence 44677888888887776665 7779999999999999999887 567999999999654 3444433 34656554433
Q ss_pred ccc-ccccccceeecCCC----ceeee---------cCceeeeecCCCCeEEEEEecCCCEEEEeeCC---CcEEEEEcc
Q 040361 209 RAP-EKRVRNMQIEAPRK----DYVIV---------ETPFHILCGHDDIITCLYVSVELDIVISGSKD---GTCVFHTLR 271 (413)
Q Consensus 209 ~~~-~~~~~~~~~~~~~~----~~~~~---------~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~d---g~i~vwd~~ 271 (413)
... ......+....+.. ..++. +..+...-.|...|..+.|+..|.+|++...+ ..|.|+++.
T Consensus 475 ~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLS 554 (733)
T KOG0650|consen 475 DRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLS 554 (733)
T ss_pred chhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecc
Confidence 211 11111111111100 01110 11244556789999999999999999987764 468899997
Q ss_pred CCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCceeee--eecCCceeEEEecCCCCEEEEeCCCCeEE
Q 040361 272 EGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKHLAS--SESNGRLNCLELSACGQFLVCGGDQGQIV 349 (413)
Q Consensus 272 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~--~~~~~~i~~~~~s~~~~~l~~~~~dg~i~ 349 (413)
......-+... ...+..+.|+|...++++++.. .|++||+..+.+.. ......|..++++|.|..|++|+.|+.+.
T Consensus 555 K~~sQ~PF~ks-kG~vq~v~FHPs~p~lfVaTq~-~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~ 632 (733)
T KOG0650|consen 555 KRKSQSPFRKS-KGLVQRVKFHPSKPYLFVATQR-SVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMC 632 (733)
T ss_pred cccccCchhhc-CCceeEEEecCCCceEEEEecc-ceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeE
Confidence 77665555443 4578999999999888888764 79999997544332 34456789999999999999999999999
Q ss_pred EEECCCC-ceEEEecCCCCcEEEEEEccCCe-EEEEcCCCeEEEEEe
Q 040361 350 VRSMNSL-EVVRRYSGVGKIITSLAVTPEEC-FLAGTKDGCLLVYSI 394 (413)
Q Consensus 350 v~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~dg~i~vw~~ 394 (413)
.||+.-. ++.+++..|...+++++|++.-- |.+|+.||++.|+.-
T Consensus 633 WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 633 WFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHG 679 (733)
T ss_pred EEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEee
Confidence 9999854 67788888999999999999854 446999999998853
No 170
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.84 E-value=4.6e-20 Score=149.32 Aligned_cols=284 Identities=14% Similarity=0.143 Sum_probs=197.3
Q ss_pred CeEEEEeecCCcEEEEecCceEEEEEeecc------------C----CCCCCceeeecCCCCccccCCCcCCCcccCCCC
Q 040361 63 SGIVYVGMLDSSIVLVNQGLTLSVKMWLTT------------Q----LQSGGNFTFSGSQDPFFGVGADILSPRNVGSPL 126 (413)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~----~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~ 126 (413)
.+.+++-...+.+.+++...+..+++.... + ......+++.|+.-|.+++.+. ... ...
T Consensus 54 e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~--~~~---~~~ 128 (385)
T KOG1034|consen 54 EPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDV--VSG---QCS 128 (385)
T ss_pred CCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEec--chh---hhc
Confidence 344444455567788887777765554322 1 1223578899999999998531 111 223
Q ss_pred cccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEe---ecCCCeEEEEEECCCCCEEEEccCCCcEEEE
Q 040361 127 AESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSI---RQHRDVVSCVAVTTDGSILATGSYDTTVMVW 203 (413)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw 203 (413)
.....|+..+..+.+.|....|+++++.|.+|++|+++++.++..+ .+|.+.|.++.|+++|.+|++++.|.++++|
T Consensus 129 ~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W 208 (385)
T KOG1034|consen 129 KNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLW 208 (385)
T ss_pred cceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEE
Confidence 3445668888899999999999999999999999999999999887 5699999999999999999999999999999
Q ss_pred EeccccccccccccceeecCCCceee--ecC--ce-eeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEcc-CCeE--
Q 040361 204 EVIRARAPEKRVRNMQIEAPRKDYVI--VET--PF-HILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLR-EGRY-- 275 (413)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~-~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~-~~~~-- 275 (413)
++...+.....-.............+ ... +. .+-.-|...|.|+.|-- +++++-+.++.|..|... -.+.
T Consensus 209 ~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g--d~ilSkscenaI~~w~pgkl~e~~~ 286 (385)
T KOG1034|consen 209 RLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG--DFILSKSCENAIVCWKPGKLEESIH 286 (385)
T ss_pred ecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHh--hheeecccCceEEEEecchhhhhhh
Confidence 99865432211111000000000000 000 11 13345888898988864 689999999999999872 1111
Q ss_pred -----------EEEEeCCCCCceeeE--EEccCCcEEEEECCCCeEEEEEeCCcee------eeeecCCceeEEEecCCC
Q 040361 276 -----------VRSLCHPSGSALSKL--AASRHGRIVLYGDDDLSLHLFSINGKHL------ASSESNGRLNCLELSACG 336 (413)
Q Consensus 276 -----------~~~~~~~~~~~v~~~--~~~~~~~~l~~~~~d~~i~i~d~~~~~~------~~~~~~~~i~~~~~s~~~ 336 (413)
+..+..+. ..+.-+ ++++-++.|+.|...|.+++||++.... ........|...+|+.||
T Consensus 287 ~vkp~es~~Ti~~~~~~~~-c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dg 365 (385)
T KOG1034|consen 287 NVKPPESATTILGEFDYPM-CDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDG 365 (385)
T ss_pred ccCCCccceeeeeEeccCc-cceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccC
Confidence 22233321 234444 5566788999999999999999983222 112345679999999999
Q ss_pred CEEEEeCCCCeEEEEECC
Q 040361 337 QFLVCGGDQGQIVVRSMN 354 (413)
Q Consensus 337 ~~l~~~~~dg~i~v~d~~ 354 (413)
.+|+...+|+.|.-||..
T Consensus 366 s~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 366 SILVLVCDDGTVWRWDRV 383 (385)
T ss_pred cEEEEEeCCCcEEEEEee
Confidence 999999999999999854
No 171
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=2.6e-19 Score=149.91 Aligned_cols=193 Identities=22% Similarity=0.241 Sum_probs=152.8
Q ss_pred EEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEe
Q 040361 180 SCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISG 259 (413)
Q Consensus 180 ~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~ 259 (413)
.+++|+.+|..|++|+.||++|+|+..... .+.....|...|.++.|+||++.|++-
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~-----------------------t~l~e~~~~~eV~DL~FS~dgk~lasi 204 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSML-----------------------TILEEIAHHAEVKDLDFSPDGKFLASI 204 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcch-----------------------hhhhhHhhcCccccceeCCCCcEEEEe
Confidence 789999999999999999999999976655 456667899999999999999999999
Q ss_pred eCCCcEEEEEccCCeEEEEEe-CCCCCceeeEEEccCC-----cEEEEECCCCeEEEEEeC---C-ceeee---eecCCc
Q 040361 260 SKDGTCVFHTLREGRYVRSLC-HPSGSALSKLAASRHG-----RIVLYGDDDLSLHLFSIN---G-KHLAS---SESNGR 326 (413)
Q Consensus 260 ~~dg~i~vwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~-----~~l~~~~~d~~i~i~d~~---~-~~~~~---~~~~~~ 326 (413)
+.| ..+||+.+++..+.... ...+.....+.|+.++ .+++.....+.|+.|++. + ..+.. ......
T Consensus 205 g~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~s 283 (398)
T KOG0771|consen 205 GAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKS 283 (398)
T ss_pred cCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCc
Confidence 999 89999999997776665 2223345666777766 233333445677777764 1 11111 233457
Q ss_pred eeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEec-CCCCcEEEEEEccCCeEE-EEcCCCeEEEEEecC
Q 040361 327 LNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYS-GVGKIITSLAVTPEECFL-AGTKDGCLLVYSIEN 396 (413)
Q Consensus 327 i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l-~~~~dg~i~vw~~~~ 396 (413)
|.+++.+++|++++.|+.||.|.|++..+.+.+.-.+ .|...|+.+.|+||.+.+ +.+.|....+..+.-
T Consensus 284 iSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 284 ISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred ceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 9999999999999999999999999999888776554 799999999999997666 588888888888765
No 172
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=6.9e-18 Score=131.30 Aligned_cols=244 Identities=18% Similarity=0.330 Sum_probs=173.8
Q ss_pred cceeEEEEecCCCCEEEEeecCCCeEEEEEcCC---------C-cEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEE
Q 040361 133 GSQCFTTMQTPSENFLITCGNWENSFQVIALND---------G-RVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMV 202 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~---------~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~i 202 (413)
...+++-+++|.++++++ |..+|.|.+..+.+ + ..+-..++|.++|+.++|. ..+|++|+. |.|+-
T Consensus 10 ~~tvf~qa~sp~~~~l~a-gn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~g 85 (325)
T KOG0649|consen 10 YNTVFAQAISPSKQYLFA-GNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYG 85 (325)
T ss_pred HHHHHHHhhCCcceEEEE-ecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEE
Confidence 345666778899988776 66699999998753 2 2344557899999999997 347777764 99999
Q ss_pred EEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCC
Q 040361 203 WEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHP 282 (413)
Q Consensus 203 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 282 (413)
|...........-..+... .+.+.-.-.--.|+++...|..+-++.++.|+.++.||+++|+..+.+.+|
T Consensus 86 w~W~E~~es~~~K~lwe~~----------~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGH 155 (325)
T KOG0649|consen 86 WEWNEEEESLATKRLWEVK----------IPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGH 155 (325)
T ss_pred eeehhhhhhccchhhhhhc----------CccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCC
Confidence 9886544211000000000 011111112236889999998888888889999999999999999999988
Q ss_pred CCCceeeEEEccCCcEEEEECCCCeEEEEEeCC-ceeeeee---c--------CCceeEEEecCCCCEEEEeCCCCeEEE
Q 040361 283 SGSALSKLAASRHGRIVLYGDDDLSLHLFSING-KHLASSE---S--------NGRLNCLELSACGQFLVCGGDQGQIVV 350 (413)
Q Consensus 283 ~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~---~--------~~~i~~~~~s~~~~~l~~~~~dg~i~v 350 (413)
. ..+.+++--.....+++|+.||++++||.++ +.+.... + ...|.+++. +..+|++|+.. .+.+
T Consensus 156 t-DYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgGp-~lsl 231 (325)
T KOG0649|consen 156 T-DYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGGP-KLSL 231 (325)
T ss_pred c-ceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCCC-ceeE
Confidence 5 4788888755566799999999999999984 3333321 1 123444544 67788888654 7899
Q ss_pred EECCCCceEEEecCCCCcEEEEEEccCCeEEEEcCCCeEEEEEecC
Q 040361 351 RSMNSLEVVRRYSGVGKIITSLAVTPEECFLAGTKDGCLLVYSIEN 396 (413)
Q Consensus 351 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~dg~i~vw~~~~ 396 (413)
|.+++.++...++ -..++..+.|..| .+++++..+.+.-|.+..
T Consensus 232 whLrsse~t~vfp-ipa~v~~v~F~~d-~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 232 WHLRSSESTCVFP-IPARVHLVDFVDD-CVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred EeccCCCceEEEe-cccceeEeeeecc-eEEEeccccceeeeeecc
Confidence 9999999888876 4567888888844 677888888888888754
No 173
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.82 E-value=5.2e-16 Score=142.98 Aligned_cols=317 Identities=22% Similarity=0.353 Sum_probs=225.8
Q ss_pred EEEecCCCCCCeEEEEeecCCcEEEEecCceE-EEEEeec--------cCC-CCCCc-eeeec-CCCCccccCCCcCCCc
Q 040361 53 SIICSTRHQPSGIVYVGMLDSSIVLVNQGLTL-SVKMWLT--------TQL-QSGGN-FTFSG-SQDPFFGVGADILSPR 120 (413)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--------~~~-s~~~~-~l~~~-~~d~~~~~~~~~~~~~ 120 (413)
.+....+......+..+..++.+.+|+..... ....+.. ... ++++. .++.. ..|+.+.+|+...
T Consensus 67 ~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--- 143 (466)
T COG2319 67 SITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLST--- 143 (466)
T ss_pred eEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecC---
Confidence 34555566777777777788899999866553 3332222 112 66776 44443 4488888864322
Q ss_pred ccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCC-EEEEccCCCc
Q 040361 121 NVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGS-ILATGSYDTT 199 (413)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~dg~ 199 (413)
..........+...+..+.++|++..+++.+..|+.+++|+...+..+..+.+|...|.+++|+|++. .+++++.|+.
T Consensus 144 -~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~ 222 (466)
T COG2319 144 -PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGT 222 (466)
T ss_pred -CCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCc
Confidence 11122223334556668999999996666543499999999999899999999999999999999998 5566699999
Q ss_pred EEEEEeccccccccccccceeecCCCceeeecCcee-eeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeE-EE
Q 040361 200 VMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFH-ILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRY-VR 277 (413)
Q Consensus 200 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~ 277 (413)
|++||...+. ... .+.+|.... ...|++++..+++++.|+.+++||++.... ..
T Consensus 223 i~~wd~~~~~-----------------------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 278 (466)
T COG2319 223 IRLWDLSTGK-----------------------LLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLR 278 (466)
T ss_pred EEEEECCCCc-----------------------EEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEE
Confidence 9999876444 334 577787775 448999998899999999999999987665 44
Q ss_pred EEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCceee-e-e--ecCCceeEEEecCCCCEEEEe-CCCCeEEEEE
Q 040361 278 SLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKHLA-S-S--ESNGRLNCLELSACGQFLVCG-GDQGQIVVRS 352 (413)
Q Consensus 278 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~-~--~~~~~i~~~~~s~~~~~l~~~-~~dg~i~v~d 352 (413)
.+..+ ...+.++.+.|++..+++++.|+.+.+||....... . . .+...+..+.+.+++..++.+ ..|+.+.+|+
T Consensus 279 ~~~~~-~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 357 (466)
T COG2319 279 TLSGH-SSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD 357 (466)
T ss_pred EEecC-CccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeee
Confidence 44333 568999999998888888888888999988744322 2 2 455568889884333556655 6789999999
Q ss_pred CCCCceEEEecCCCCcEEEEEEccCCe-EEE-EcCCCeEEEEEecCCccc
Q 040361 353 MNSLEVVRRYSGVGKIITSLAVTPEEC-FLA-GTKDGCLLVYSIENRRTS 400 (413)
Q Consensus 353 ~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~-~~~dg~i~vw~~~~~~~~ 400 (413)
.............. .+..+.+.+ .. +.. +..++.+.+|+.......
T Consensus 358 ~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (466)
T COG2319 358 LRTGKPLKTLEGHS-NVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLL 405 (466)
T ss_pred cCCCceeEEecCCc-eEEEEEECC-CCCEEEEecCCCceEEEecccCeee
Confidence 98877333333222 288889988 53 333 688999999999876544
No 174
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=4e-18 Score=157.82 Aligned_cols=277 Identities=18% Similarity=0.246 Sum_probs=203.0
Q ss_pred CCCCCCeEEEEeecCCcEEEEecCceEEEEEeeccCC------------CCCCceeeecCCCCccccCCCcCC---Cccc
Q 040361 58 TRHQPSGIVYVGMLDSSIVLVNQGLTLSVKMWLTTQL------------QSGGNFTFSGSQDPFFGVGADILS---PRNV 122 (413)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------s~~~~~l~~~~~d~~~~~~~~~~~---~~~~ 122 (413)
.+++-.+.++++.....+++|+........-+....+ .-|-.++.+|+.||++++|.+-.. +.++
T Consensus 1071 ~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eL 1150 (1387)
T KOG1517|consen 1071 KFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPEL 1150 (1387)
T ss_pred eecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCcee
Confidence 4677788889888889999999887777666655443 223456889999999999864222 2111
Q ss_pred ---CCCCccccee-cceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeec-CCCeEEEEEECC-CCCEEEEccC
Q 040361 123 ---GSPLAESFEL-GSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQ-HRDVVSCVAVTT-DGSILATGSY 196 (413)
Q Consensus 123 ---~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~-h~~~v~~~~~~~-~~~~l~s~s~ 196 (413)
...+...+.. .+.-.-+.|-....+|+++|. -..|+|||....++.+.+.. ....|+++.-+- .|+.++.|-.
T Consensus 1151 VTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd-~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfa 1229 (1387)
T KOG1517|consen 1151 VTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGD-VRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFA 1229 (1387)
T ss_pred EEeeccccccCccCCCCCeeeehhhhCCeEEecCC-eeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeec
Confidence 1111111111 111234556677788888786 67999999998888877754 455677776543 4799999999
Q ss_pred CCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCC--eEEEEEecCCC-EEEEeeCCCcEEEEEccCC
Q 040361 197 DTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDI--ITCLYVSVELD-IVISGSKDGTCVFHTLREG 273 (413)
Q Consensus 197 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--i~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~ 273 (413)
||+|++||.+.... ...+...+.|... |..+.+.+.|- .+++|+.||.|++||++..
T Consensus 1230 DGsvRvyD~R~a~~--------------------ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1230 DGSVRVYDRRMAPP--------------------DSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred CCceEEeecccCCc--------------------cccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccC
Confidence 99999999876541 1256777889887 99999988664 5999999999999999874
Q ss_pred eEE--EEEeCCC--CCceeeEEEccCCcEEEEECCCCeEEEEEeCCceeeee--------ecCCceeEEEecCCCCEEEE
Q 040361 274 RYV--RSLCHPS--GSALSKLAASRHGRIVLYGDDDLSLHLFSINGKHLASS--------ESNGRLNCLELSACGQFLVC 341 (413)
Q Consensus 274 ~~~--~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~--------~~~~~i~~~~~s~~~~~l~~ 341 (413)
... .++..+. ++..+++..++...++++|+. +.|+||++.|+.+... ...+.+.|++|+|..-++|+
T Consensus 1290 ~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAa 1368 (1387)
T KOG1517|consen 1290 SKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAA 1368 (1387)
T ss_pred cccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhh
Confidence 222 1222222 345899999999999999998 8999999998766542 23356899999999999999
Q ss_pred eCCCCeEEEEECCCC
Q 040361 342 GGDQGQIVVRSMNSL 356 (413)
Q Consensus 342 ~~~dg~i~v~d~~~~ 356 (413)
|+.|..|.||.....
T Consensus 1369 G~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1369 GSADSTVSIYSCEKP 1383 (1387)
T ss_pred ccCCceEEEeecCCc
Confidence 999999999987654
No 175
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=3.1e-19 Score=166.70 Aligned_cols=234 Identities=14% Similarity=0.157 Sum_probs=179.2
Q ss_pred eeeecCCCCccccCCCcCC-CcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEee--cCC
Q 040361 100 FTFSGSQDPFFGVGADILS-PRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIR--QHR 176 (413)
Q Consensus 100 ~l~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~--~h~ 176 (413)
+++.|..||.+.+|+-.-- .......+...-.|++.|..+.|.+....++++|..||.|.|||++.-+.-.... .-.
T Consensus 82 lIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~ 161 (1049)
T KOG0307|consen 82 LIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPP 161 (1049)
T ss_pred eeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCc
Confidence 4889999999999642211 1122234555667889999999999999899989999999999998755443332 246
Q ss_pred CeEEEEEECCC-CCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCC--CeEEEEEecCC
Q 040361 177 DVVSCVAVTTD-GSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDD--IITCLYVSVEL 253 (413)
Q Consensus 177 ~~v~~~~~~~~-~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~i~~~~~~~~~ 253 (413)
+.|.+++|+.. .+.|++++.+|.+.|||++..+ ++..+..|.. .+..++|+|+.
T Consensus 162 ~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~-----------------------pii~ls~~~~~~~~S~l~WhP~~ 218 (1049)
T KOG0307|consen 162 SEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKK-----------------------PIIKLSDTPGRMHCSVLAWHPDH 218 (1049)
T ss_pred ccceEeccchhhhHHhhccCCCCCceeccccCCC-----------------------cccccccCCCccceeeeeeCCCC
Confidence 78999999874 6678999999999999998876 4555555544 46789999976
Q ss_pred C-EEEEeeCCC---cEEEEEccCCe-EEEEEeCCCCCceeeEEEccCC-cEEEEECCCCeEEEEEeCC-ceeeeee-cCC
Q 040361 254 D-IVISGSKDG---TCVFHTLREGR-YVRSLCHPSGSALSKLAASRHG-RIVLYGDDDLSLHLFSING-KHLASSE-SNG 325 (413)
Q Consensus 254 ~-~l~s~~~dg---~i~vwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~-~~~~~~~-~~~ 325 (413)
. .+++++.|. .|.+||+|.-. .++.+..| ...|.++.|++.+ .++++++.|+.|.+|+.+. +.+.... ...
T Consensus 219 aTql~~As~dd~~PviqlWDlR~assP~k~~~~H-~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~n 297 (1049)
T KOG0307|consen 219 ATQLLVASGDDSAPVIQLWDLRFASSPLKILEGH-QRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGN 297 (1049)
T ss_pred ceeeeeecCCCCCceeEeecccccCCchhhhccc-ccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCc
Confidence 4 566666544 69999998544 45566555 5689999999965 8899999999999999995 4444443 457
Q ss_pred ceeEEEecCCCC-EEEEeCCCCeEEEEECCCCc
Q 040361 326 RLNCLELSACGQ-FLVCGGDQGQIVVRSMNSLE 357 (413)
Q Consensus 326 ~i~~~~~s~~~~-~l~~~~~dg~i~v~d~~~~~ 357 (413)
.+..+.|+|..- .+++++-||.|.||.+....
T Consensus 298 W~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 298 WCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred ceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 789999999875 88889999999999987643
No 176
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.81 E-value=1.5e-17 Score=134.57 Aligned_cols=239 Identities=14% Similarity=0.149 Sum_probs=186.8
Q ss_pred cceeEEEEecCCCCEEEEeecCCCeEEEEEcCCC---cEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEecccc
Q 040361 133 GSQCFTTMQTPSENFLITCGNWENSFQVIALNDG---RVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRAR 209 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~ 209 (413)
...+.+.+|+++...++++. +...|.||..... +..+++..|...|++++|+|..+.|++|+.|..-++|....+.
T Consensus 10 ~~pitchAwn~drt~iAv~~-~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSP-NNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred cCceeeeeecCCCceEEecc-CCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 45678888999998888855 4789999987654 4678889999999999999999999999999999999984332
Q ss_pred ccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEE---EEEeCCCCCc
Q 040361 210 APEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYV---RSLCHPSGSA 286 (413)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~---~~~~~~~~~~ 286 (413)
...+...+..+....+++.|+|.++.|++|+....|.+|-++...-- +.++.+..+.
T Consensus 89 --------------------~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirSt 148 (361)
T KOG1523|consen 89 --------------------TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRST 148 (361)
T ss_pred --------------------eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccc
Confidence 11255667789999999999999999999999999999987644332 2345555678
Q ss_pred eeeEEEccCCcEEEEECCCCeEEEEEeCCc-------------------eeeee-ecCCceeEEEecCCCCEEEEeCCCC
Q 040361 287 LSKLAASRHGRIVLYGDDDLSLHLFSINGK-------------------HLASS-ESNGRLNCLELSACGQFLVCGGDQG 346 (413)
Q Consensus 287 v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-------------------~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg 346 (413)
|.++.|+|++-++++|+.|+..++|..--+ .+... ...+.+..+.|+|+|..|+-.+.|.
T Consensus 149 v~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds 228 (361)
T KOG1523|consen 149 VTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDS 228 (361)
T ss_pred eeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCC
Confidence 999999999999999999999999975211 11111 3457899999999999999999999
Q ss_pred eEEEEECCCCc-eEEEecCCCCcEEEEEEccCCeEEEEcCCCeEEEE
Q 040361 347 QIVVRSMNSLE-VVRRYSGVGKIITSLAVTPEECFLAGTKDGCLLVY 392 (413)
Q Consensus 347 ~i~v~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~dg~i~vw 392 (413)
.+.+-|..... .+.......-+..++.|-.+..+++++.|..=.++
T Consensus 229 ~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~~vv~ag~~c~P~lf 275 (361)
T KOG1523|consen 229 TVSFVDAAGPSERVQSVATAQLPLLSVSWISENSVVAAGYDCGPVLF 275 (361)
T ss_pred ceEEeecCCCchhccchhhccCCceeeEeecCCceeecCCCCCceEE
Confidence 99999987654 34444434467888888877777777766443333
No 177
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.81 E-value=1.1e-17 Score=133.49 Aligned_cols=247 Identities=15% Similarity=0.222 Sum_probs=173.1
Q ss_pred eeEEEEec--CCCCEEEEeecC----CCeEEEEEc--CCCcEEEEe-ecCCCeEEEEEECCCC-----CEEEEccCCCcE
Q 040361 135 QCFTTMQT--PSENFLITCGNW----ENSFQVIAL--NDGRVVQSI-RQHRDVVSCVAVTTDG-----SILATGSYDTTV 200 (413)
Q Consensus 135 ~~~~~~~~--~~~~~l~~~g~~----d~~i~i~~~--~~~~~~~~~-~~h~~~v~~~~~~~~~-----~~l~s~s~dg~i 200 (413)
..+++.|+ ++.++.++.|+. .+.|.|..+ ++++.+..- ..|.-+++.+.|.|+. .+|+|++ -.+
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~L 123 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFL 123 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--CeE
Confidence 34455555 445555555652 456666654 344444322 2488999999999975 3466554 479
Q ss_pred EEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEec-CCCEEEEeeCCCcEEEEEccCCeE--EE
Q 040361 201 MVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSV-ELDIVISGSKDGTCVFHTLREGRY--VR 277 (413)
Q Consensus 201 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~--~~ 277 (413)
++|.+............+ ....-..+..++++..|+. +-+++.+++-|-++.+||++++.. ++
T Consensus 124 RlWri~~ee~~~~~~~~L--------------~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vk 189 (364)
T KOG0290|consen 124 RLWRIGDEESRVELQSVL--------------NNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVK 189 (364)
T ss_pred EEEeccCcCCceehhhhh--------------ccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeecccccee
Confidence 999997533111100000 0111234667899999986 667999999999999999998743 33
Q ss_pred EEeCCCCCceeeEEEccCC-cEEEEECCCCeEEEEEeCCceeeee----e-cCCceeEEEecCCC-CEEEEeCC-CCeEE
Q 040361 278 SLCHPSGSALSKLAASRHG-RIVLYGDDDLSLHLFSINGKHLASS----E-SNGRLNCLELSACG-QFLVCGGD-QGQIV 349 (413)
Q Consensus 278 ~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~----~-~~~~i~~~~~s~~~-~~l~~~~~-dg~i~ 349 (413)
+....+..+|..++|...+ +.+++.+.||.+++||++.....+. . ...+...++|++.. +++|+-.. ...|.
T Consensus 190 TQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~ 269 (364)
T KOG0290|consen 190 TQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVV 269 (364)
T ss_pred eEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEE
Confidence 3333346689999999854 5788999999999999985443331 2 25678889998764 67776544 45799
Q ss_pred EEECCC-CceEEEecCCCCcEEEEEEccCC--eEEEEcCCCeEEEEEecCC
Q 040361 350 VRSMNS-LEVVRRYSGVGKIITSLAVTPEE--CFLAGTKDGCLLVYSIENR 397 (413)
Q Consensus 350 v~d~~~-~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~dg~i~vw~~~~~ 397 (413)
|.|++. ..++.++++|.+.|+.++|.|.. .+.++++|..+.+||+...
T Consensus 270 iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 270 ILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQM 320 (364)
T ss_pred EEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccc
Confidence 999986 46788999999999999999983 4667999999999999874
No 178
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.80 E-value=1e-19 Score=164.15 Aligned_cols=247 Identities=17% Similarity=0.263 Sum_probs=190.9
Q ss_pred cceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccc
Q 040361 129 SFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRA 208 (413)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~ 208 (413)
.+.|-+.+.++.+.-.|.+++. |+.|..++||..+++.++...+||.+.|+.++.+.+..+++++|.|..|++|.+.++
T Consensus 186 LlgH~naVyca~fDrtg~~Iit-gsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~ 264 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYIIT-GSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG 264 (1113)
T ss_pred HHhhhhheeeeeeccccceEee-cCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCC
Confidence 4455667888888888877776 887999999999999999999999999999999999999999999999999999988
Q ss_pred cccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEE---EeCCCCC
Q 040361 209 RAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRS---LCHPSGS 285 (413)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~---~~~~~~~ 285 (413)
. ++..+.+|++.|++++|+|-. +.+.||++++||.+-.-.+.. .....+.
T Consensus 265 ~-----------------------pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~ 317 (1113)
T KOG0644|consen 265 A-----------------------PVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKD 317 (1113)
T ss_pred c-----------------------hHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCccccc
Confidence 7 889999999999999999954 778899999999871111111 1122234
Q ss_pred ceeeEEEccCCcEEEEECCCCeEEEEEeCCceeeeeecCCceeEEEecCC-CCEEEEeCCCCeEEEEECCCCceEEEecC
Q 040361 286 ALSKLAASRHGRIVLYGDDDLSLHLFSINGKHLASSESNGRLNCLELSAC-GQFLVCGGDQGQIVVRSMNSLEVVRRYSG 364 (413)
Q Consensus 286 ~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~ 364 (413)
.+.++.+..++..+++++.|+.-..|......- +...+.-+.++.+ ..+.+++-.+..+.+|++.+|.+++.+.+
T Consensus 318 ~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~----~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~g 393 (1113)
T KOG0644|consen 318 LVDSILFENNGDRFLTGSRDGEARNHEFEQLAW----RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMG 393 (1113)
T ss_pred ceeeeeccccccccccccCCcccccchhhHhhh----hccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcc
Confidence 567778888888899999998888776641110 0011111111112 24566677788899999999999999999
Q ss_pred CCCcEEEEEEccCCeEE--EEcCCCeEEEEEecCCcccccccccc
Q 040361 365 VGKIITSLAVTPEECFL--AGTKDGCLLVYSIENRRTSLPRNVKS 407 (413)
Q Consensus 365 ~~~~v~~~~~~~~~~~l--~~~~dg~i~vw~~~~~~~~~~~~~~~ 407 (413)
|...+..+.++|-+..+ +++.||...|||+..+.+.......|
T Consensus 394 hsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh 438 (1113)
T KOG0644|consen 394 HSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGH 438 (1113)
T ss_pred cccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeeccc
Confidence 99999999999986433 59999999999999886655444444
No 179
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=1.1e-17 Score=138.88 Aligned_cols=286 Identities=12% Similarity=0.069 Sum_probs=204.0
Q ss_pred EeeccCCCCCCceeeecCCCCccccCCCc-CCCcccCCCCcccceec-ceeEEEEecCCCCEEEEeecCCCeEEEEEcCC
Q 040361 88 MWLTTQLQSGGNFTFSGSQDPFFGVGADI-LSPRNVGSPLAESFELG-SQCFTTMQTPSENFLITCGNWENSFQVIALND 165 (413)
Q Consensus 88 ~~~~~~~s~~~~~l~~~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~ 165 (413)
+....+||.++.+|++|+.|...++|..+ .-.++..+++.-.-.+| +.++++.|...+..+. +|..+++|.+-|+++
T Consensus 58 CiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~-SG~~~~~VI~HDiEt 136 (609)
T KOG4227|consen 58 CINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLY-SGERWGTVIKHDIET 136 (609)
T ss_pred ccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEe-cCCCcceeEeeeccc
Confidence 44556789999999999999999997532 12233334444333344 7888888876655555 577799999999999
Q ss_pred CcEEEEeec--CCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCC
Q 040361 166 GRVVQSIRQ--HRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDI 243 (413)
Q Consensus 166 ~~~~~~~~~--h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 243 (413)
.+.+..+.. ..+.|+.+..+|..+.|++.+.++.|.+||.+....+.. ...+......
T Consensus 137 ~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~--------------------~~~~AN~~~~ 196 (609)
T KOG4227|consen 137 KQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPIS--------------------LVLPANSGKN 196 (609)
T ss_pred ceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCc--------------------eeeecCCCcc
Confidence 988877753 335899999999999999999999999999987763222 1223334556
Q ss_pred eEEEEEecCC-CEEEEeeCCCcEEEEEccCCeE-EEEEe----CCC-CCceeeEEEccCCcEEEEECCCCeEEEEEeCCc
Q 040361 244 ITCLYVSVEL-DIVISGSKDGTCVFHTLREGRY-VRSLC----HPS-GSALSKLAASRHGRIVLYGDDDLSLHLFSINGK 316 (413)
Q Consensus 244 i~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~-~~~~~----~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 316 (413)
...+.|+|.. .+|++.+..+-+.+||.+.... +.... .+. .....++.|+|+|..+++--....-.+||+-.+
T Consensus 197 F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~ 276 (609)
T KOG4227|consen 197 FYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQ 276 (609)
T ss_pred ceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecc
Confidence 7788899854 5788889999999999875432 11111 111 223467889999999888776666678888754
Q ss_pred eeeee--ecC-------CceeEEEecCCCCEEEEeCCCCeEEEEECCC----------C-------------ceEEEecC
Q 040361 317 HLASS--ESN-------GRLNCLELSACGQFLVCGGDQGQIVVRSMNS----------L-------------EVVRRYSG 364 (413)
Q Consensus 317 ~~~~~--~~~-------~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~----------~-------------~~~~~~~~ 364 (413)
.+... .|. ..+.+++|.-|.. +++|+.+-.|++|.+.. | +.+..+++
T Consensus 277 R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrG 355 (609)
T KOG4227|consen 277 RCFVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRG 355 (609)
T ss_pred cceeEeccCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEec
Confidence 33332 221 2456677775544 89999999999998742 1 12345789
Q ss_pred CCCcEEEEEEccCCeEE-EEcCCCeEEEEEec
Q 040361 365 VGKIITSLAVTPEECFL-AGTKDGCLLVYSIE 395 (413)
Q Consensus 365 ~~~~v~~~~~~~~~~~l-~~~~dg~i~vw~~~ 395 (413)
|.+-++.+.|+|...++ +.+-...+++|.-.
T Consensus 356 HRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 356 HRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred ccccccceeecCCcceEeccchhhheeccccc
Confidence 99999999999997766 47788999999754
No 180
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.80 E-value=1.2e-17 Score=143.91 Aligned_cols=205 Identities=17% Similarity=0.254 Sum_probs=160.7
Q ss_pred CEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCC
Q 040361 146 NFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRK 225 (413)
Q Consensus 146 ~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 225 (413)
+.++++.+ ||.+.|.+- .+++...+..|.+.+.+-.|+|||.-|+|+++||.|++|.-...
T Consensus 76 d~~~i~s~-DGkf~il~k-~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM----------------- 136 (737)
T KOG1524|consen 76 DTLLICSN-DGRFVILNK-SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM----------------- 136 (737)
T ss_pred ceEEEEcC-CceEEEecc-cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccch-----------------
Confidence 44555444 999999874 68888889999999999999999999999999999999985332
Q ss_pred ceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCC
Q 040361 226 DYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDD 305 (413)
Q Consensus 226 ~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 305 (413)
...++.....+|.|++|.|+.+.++-+. .+.+.+=.+.....+...+.| ..-|.++.|++..+++++|+.|
T Consensus 137 -------LRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAH-DGiiL~~~W~~~s~lI~sgGED 207 (737)
T KOG1524|consen 137 -------LRSTVVQNEESIRCARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWRAH-DGLVLSLSWSTQSNIIASGGED 207 (737)
T ss_pred -------HHHHHhhcCceeEEEEECCCCCceEEec-CCeEEEeecccccceeEEecc-CcEEEEeecCccccceeecCCc
Confidence 2344556778999999999887665543 456666666666666667766 4589999999999999999999
Q ss_pred CeEEEEEeCCceeee-eecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEec-CCCCcEEEEEEccCCeEEE-
Q 040361 306 LSLHLFSINGKHLAS-SESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYS-GVGKIITSLAVTPEECFLA- 382 (413)
Q Consensus 306 ~~i~i~d~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~- 382 (413)
-..++||-.|..+.. ..|+.+|++++|.|+ +.++.++.+ +.+ +. ...+.|..++|++||.-++
T Consensus 208 ~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t~R------------~~~p~~GSifnlsWS~DGTQ~a~ 273 (737)
T KOG1524|consen 208 FRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYLLWSYN-TAR------------FSSPRVGSIFNLSWSADGTQATC 273 (737)
T ss_pred eeEEeecccCcccccCChhccceeeeeeccc-cceeeeeee-eee------------ecCCCccceEEEEEcCCCceeec
Confidence 999999999877765 568999999999999 566666543 333 22 2457899999999997665
Q ss_pred EcCCCeEEEE
Q 040361 383 GTKDGCLLVY 392 (413)
Q Consensus 383 ~~~dg~i~vw 392 (413)
|+..|.+.+=
T Consensus 274 gt~~G~v~~A 283 (737)
T KOG1524|consen 274 GTSTGQLIVA 283 (737)
T ss_pred cccCceEEEe
Confidence 6677776553
No 181
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.80 E-value=1.1e-17 Score=151.80 Aligned_cols=257 Identities=13% Similarity=0.106 Sum_probs=179.8
Q ss_pred cceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcE--EEE----eecCCCeEEEEEECCCCC--EEEEccCCCcE
Q 040361 129 SFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRV--VQS----IRQHRDVVSCVAVTTDGS--ILATGSYDTTV 200 (413)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~--~~~----~~~h~~~v~~~~~~~~~~--~l~s~s~dg~i 200 (413)
.+.-...+.++.|.|....++++|..+|.|.+||+..+.. ... .-.|..+++.+.|..+.. -+++++.||.|
T Consensus 238 ~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i 317 (555)
T KOG1587|consen 238 VLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSI 317 (555)
T ss_pred EEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcE
Confidence 3445778999999999999999999999999999976654 222 234899999999977544 49999999999
Q ss_pred EEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEec-CCCEEEEeeCCCcEEEEE---ccCCe-E
Q 040361 201 MVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSV-ELDIVISGSKDGTCVFHT---LREGR-Y 275 (413)
Q Consensus 201 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~-~~~~l~s~~~dg~i~vwd---~~~~~-~ 275 (413)
..|+++.-..+......... .....-..-...+++++|.+ +-..++.|+++|.|..-+ .+... .
T Consensus 318 ~~W~~~~l~~P~e~~~~~~~-----------~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~ 386 (555)
T KOG1587|consen 318 CSWDTDMLSLPVEGLLLESK-----------KHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEV 386 (555)
T ss_pred eeeeccccccchhhcccccc-----------cccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccc
Confidence 99987655432211100000 00000011234578899987 445799999999987633 22222 0
Q ss_pred ----EEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeC-Cc-eeee-eecCCceeEEEecCCC-CEEEEeCCCCe
Q 040361 276 ----VRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSIN-GK-HLAS-SESNGRLNCLELSACG-QFLVCGGDQGQ 347 (413)
Q Consensus 276 ----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~-~~~~-~~~~~~i~~~~~s~~~-~~l~~~~~dg~ 347 (413)
...+.. +..+|..+.++|=+..++..+.|.++++|... .. .+.. ..+...+++++|||.. ..++++..||.
T Consensus 387 ~~~~~~~~~~-h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~ 465 (555)
T KOG1587|consen 387 SYKGHSTFIT-HIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGN 465 (555)
T ss_pred cccccccccc-cCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCc
Confidence 112222 34689999999966555555559999999987 22 2222 3455669999999986 57788888999
Q ss_pred EEEEECCCC--ceEEEecCCCCcEEEEEEccCCeEEE-EcCCCeEEEEEecCC
Q 040361 348 IVVRSMNSL--EVVRRYSGVGKIITSLAVTPEECFLA-GTKDGCLLVYSIENR 397 (413)
Q Consensus 348 i~v~d~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~dg~i~vw~~~~~ 397 (413)
+.+||+... .++.....+....+.+.|+++|++++ |...|++.+|++...
T Consensus 466 l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 466 LDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred eehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 999999753 45555555566678888898898886 889999999999653
No 182
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.80 E-value=2.9e-18 Score=150.62 Aligned_cols=229 Identities=19% Similarity=0.225 Sum_probs=170.0
Q ss_pred CCeEEEEEcCC-CcEE-EEeec--CCCeEEEEEECC-CCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceee
Q 040361 155 ENSFQVIALND-GRVV-QSIRQ--HRDVVSCVAVTT-DGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVI 229 (413)
Q Consensus 155 d~~i~i~~~~~-~~~~-~~~~~--h~~~v~~~~~~~-~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (413)
.|.|-||+++. |++- ..+.+ ....|+.+.|.| |...|++++.||.|++|.+..+...+..
T Consensus 602 gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~--------------- 666 (1012)
T KOG1445|consen 602 GGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENE--------------- 666 (1012)
T ss_pred CceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCccc---------------
Confidence 78999999864 3322 11111 456899999999 7889999999999999999877533221
Q ss_pred ecCceeeeecCCCCeEEEEEec-CCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeE
Q 040361 230 VETPFHILCGHDDIITCLYVSV-ELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSL 308 (413)
Q Consensus 230 ~~~~~~~~~~h~~~i~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 308 (413)
.++...+..|...|+++.|+| ..+.|++++.|-+|++||++++.....+..|. ..|..++|+|+|+.+++.+.||+|
T Consensus 667 -~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHt-dqIf~~AWSpdGr~~AtVcKDg~~ 744 (1012)
T KOG1445|consen 667 -MTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHT-DQIFGIAWSPDGRRIATVCKDGTL 744 (1012)
T ss_pred -CCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCc-CceeEEEECCCCcceeeeecCceE
Confidence 236778899999999999999 45689999999999999999999888888875 589999999999999999999999
Q ss_pred EEEEeCCceeeeee----cCCceeEEEecCCCCEEEEeCCCC----eEEEEECCCCc--eEEEecC-CCCcEEEEEEccC
Q 040361 309 HLFSINGKHLASSE----SNGRLNCLELSACGQFLVCGGDQG----QIVVRSMNSLE--VVRRYSG-VGKIITSLAVTPE 377 (413)
Q Consensus 309 ~i~d~~~~~~~~~~----~~~~i~~~~~s~~~~~l~~~~~dg----~i~v~d~~~~~--~~~~~~~-~~~~v~~~~~~~~ 377 (413)
++|+.+........ ....-..+.|.-+|+++++.+.|. .|.+||.++.. .+.+..- -.-.+.--.+.+|
T Consensus 745 rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~D 824 (1012)
T KOG1445|consen 745 RVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYD 824 (1012)
T ss_pred EEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCC
Confidence 99999843333222 223445678888999998877654 58889877533 3322211 1111222235556
Q ss_pred C--eEEEEcCCCeEEEEEecCCccc
Q 040361 378 E--CFLAGTKDGCLLVYSIENRRTS 400 (413)
Q Consensus 378 ~--~~l~~~~dg~i~vw~~~~~~~~ 400 (413)
. .|++|-.|..|++|.+-..++.
T Consensus 825 s~~lfltGKGD~~v~~yEv~~esPy 849 (1012)
T KOG1445|consen 825 SNVLFLTGKGDRFVNMYEVIYESPY 849 (1012)
T ss_pred CceEEEecCCCceEEEEEecCCCce
Confidence 3 3557989999999999776544
No 183
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.79 E-value=7.1e-17 Score=128.91 Aligned_cols=240 Identities=16% Similarity=0.223 Sum_probs=174.9
Q ss_pred ceecceeEEEEecCCCC----EEEEeecCCCeEEEEEcCC--CcEE--EEe-----ecCCCeEEEEEECC-CCCEEEEcc
Q 040361 130 FELGSQCFTTMQTPSEN----FLITCGNWENSFQVIALND--GRVV--QSI-----RQHRDVVSCVAVTT-DGSILATGS 195 (413)
Q Consensus 130 ~~~~~~~~~~~~~~~~~----~l~~~g~~d~~i~i~~~~~--~~~~--~~~-----~~h~~~v~~~~~~~-~~~~l~s~s 195 (413)
+.+.-.+..+.|.|+.. .++++. +..+|+|.+.. .+.. ..+ ..+..++++..|+. |.+++.++|
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhcc--cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence 55566677888888763 355434 56899999863 2221 111 23668899999987 778999999
Q ss_pred CCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCC-CEEEEeeCCCcEEEEEccCCe
Q 040361 196 YDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVEL-DIVISGSKDGTCVFHTLREGR 274 (413)
Q Consensus 196 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~ 274 (413)
-|.+..|||++++.. ......+-.|..+|..++|...+ +.+++.+.||.++++|++..+
T Consensus 171 iDTTCTiWdie~~~~--------------------~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~le 230 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVS--------------------GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLE 230 (364)
T ss_pred ccCeEEEEEEeeccc--------------------cceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccc
Confidence 999999999998741 11245677899999999999854 489999999999999998766
Q ss_pred EEEEE-eCCC-CCceeeEEEcc-CCcEEEEECCC-CeEEEEEeC--Cceeee-eecCCceeEEEecCC-CCEEEEeCCCC
Q 040361 275 YVRSL-CHPS-GSALSKLAASR-HGRIVLYGDDD-LSLHLFSIN--GKHLAS-SESNGRLNCLELSAC-GQFLVCGGDQG 346 (413)
Q Consensus 275 ~~~~~-~~~~-~~~v~~~~~~~-~~~~l~~~~~d-~~i~i~d~~--~~~~~~-~~~~~~i~~~~~s~~-~~~l~~~~~dg 346 (413)
....+ +.+. ..+...++|++ +.+++++-..| ..|.+.|++ ...+.. ..|.+.|+.++|.|. ...|.++++|.
T Consensus 231 HSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~ 310 (364)
T KOG0290|consen 231 HSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDC 310 (364)
T ss_pred cceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcc
Confidence 44333 2332 35778889988 45677765544 579999998 333333 579999999999997 46899999999
Q ss_pred eEEEEECCCCc------eEEEecCCCCcEEEEEEccC-CeEEEEcCCCeEEEE
Q 040361 347 QIVVRSMNSLE------VVRRYSGVGKIITSLAVTPE-ECFLAGTKDGCLLVY 392 (413)
Q Consensus 347 ~i~v~d~~~~~------~~~~~~~~~~~v~~~~~~~~-~~~l~~~~dg~i~vw 392 (413)
.+.+||+...- ++..+. ..+.|+.+.|++. ...++...++.+.+.
T Consensus 311 qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~kkleiL 362 (364)
T KOG0290|consen 311 QALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFGKKLEIL 362 (364)
T ss_pred eEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEecCeeeEE
Confidence 99999997531 222233 4678999999976 567766555665543
No 184
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.79 E-value=4.2e-17 Score=130.10 Aligned_cols=229 Identities=20% Similarity=0.235 Sum_probs=165.4
Q ss_pred CCCeEEEEEcCCCc--EE-EEeecCCCeEEEEEECC-CCCEEEEccCC-------CcEEEEEeccccccccccccceeec
Q 040361 154 WENSFQVIALNDGR--VV-QSIRQHRDVVSCVAVTT-DGSILATGSYD-------TTVMVWEVIRARAPEKRVRNMQIEA 222 (413)
Q Consensus 154 ~d~~i~i~~~~~~~--~~-~~~~~h~~~v~~~~~~~-~~~~l~s~s~d-------g~i~iw~~~~~~~~~~~~~~~~~~~ 222 (413)
.|+.|.+..++.+. +. ..+..|.+.|..++-+| +.+.|+|+..+ ..+.||.+...........
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~t------ 111 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSST------ 111 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccch------
Confidence 36788888776532 22 45667889999999999 45566665442 2478999866543210000
Q ss_pred CCCceeeecCceeeee-cCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeE-EEEEeCC----CCCceeeEEEcc--
Q 040361 223 PRKDYVIVETPFHILC-GHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRY-VRSLCHP----SGSALSKLAASR-- 294 (413)
Q Consensus 223 ~~~~~~~~~~~~~~~~-~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~----~~~~v~~~~~~~-- 294 (413)
-.++..+. .+-+.|.|+.|.|++..+++-. |..|.+|++.++.. +..+... .....++-+|+|
T Consensus 112 --------lE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHH 182 (370)
T KOG1007|consen 112 --------LECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHH 182 (370)
T ss_pred --------hhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCC
Confidence 01233333 4556899999999999888776 88999999987766 3333211 123466778988
Q ss_pred CCcEEEEECCCCeEEEEEeCCceee-e--eecCCceeEEEecCCCC-EEEEeCCCCeEEEEECCC-CceEEEecCCCCcE
Q 040361 295 HGRIVLYGDDDLSLHLFSINGKHLA-S--SESNGRLNCLELSACGQ-FLVCGGDQGQIVVRSMNS-LEVVRRYSGVGKII 369 (413)
Q Consensus 295 ~~~~l~~~~~d~~i~i~d~~~~~~~-~--~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~v 369 (413)
+++.+++.+ |+++..||+++.... . ..|...+..+.|+|+.+ +|+++++||.|++||.+. ..++.++.+|...|
T Consensus 183 dgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWv 261 (370)
T KOG1007|consen 183 DGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWV 261 (370)
T ss_pred ccceEEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEE
Confidence 566666554 689999999943322 2 35778899999999975 678899999999999985 45788999999999
Q ss_pred EEEEEccC--CeEEEEcCCCeEEEEEecCCc
Q 040361 370 TSLAVTPE--ECFLAGTKDGCLLVYSIENRR 398 (413)
Q Consensus 370 ~~~~~~~~--~~~l~~~~dg~i~vw~~~~~~ 398 (413)
+++.|+|. ..+|+|+.|..|.+|...+-.
T Consensus 262 W~VRfn~~hdqLiLs~~SDs~V~Lsca~svS 292 (370)
T KOG1007|consen 262 WAVRFNPEHDQLILSGGSDSAVNLSCASSVS 292 (370)
T ss_pred EEEEecCccceEEEecCCCceeEEEeccccc
Confidence 99999997 345589999999999876543
No 185
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.78 E-value=5e-17 Score=132.05 Aligned_cols=287 Identities=14% Similarity=0.119 Sum_probs=184.0
Q ss_pred ccCCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEE
Q 040361 91 TTQLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQ 170 (413)
Q Consensus 91 ~~~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~ 170 (413)
.|.|||+|+++|++++...+.--.... .+.+.+..-..+..+.|..+..+++.+.+.|+.|.+|++...+-..
T Consensus 13 ~c~fSp~g~yiAs~~~yrlviRd~~tl-------q~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~c 85 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRYRLVIRDSETL-------QLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYC 85 (447)
T ss_pred ceeECCCCCeeeeeeeeEEEEeccchh-------hHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEE
Confidence 578999999999998885443211111 1112222245567788888888888888889999999999999999
Q ss_pred EeecCCCeEEEEEECCCCCE-EEEccCCCcEEEEEecccccccc-----ccccceeecCCCceeee--------------
Q 040361 171 SIRQHRDVVSCVAVTTDGSI-LATGSYDTTVMVWEVIRARAPEK-----RVRNMQIEAPRKDYVIV-------------- 230 (413)
Q Consensus 171 ~~~~h~~~v~~~~~~~~~~~-l~s~s~dg~i~iw~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-------------- 230 (413)
.+....+++..++|+|||+. |.+...|-.|.+|.+.+.....- .++...+ .+++.+...
T Consensus 86 kIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f-~~dg~f~ai~sRrDCkdyv~i~~ 164 (447)
T KOG4497|consen 86 KIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAF-HPDGQFCAILSRRDCKDYVQISS 164 (447)
T ss_pred EeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEE-CCCCceeeeeecccHHHHHHHHh
Confidence 99988999999999999955 55666799999999988752110 0000000 111111110
Q ss_pred ---cCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCe
Q 040361 231 ---ETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLS 307 (413)
Q Consensus 231 ---~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 307 (413)
...+..+.-.+-..+.+.|+|||+.+ .+||---.-.+..+ +.+-.+..++|+|.++++++|+.|+.
T Consensus 165 c~~W~ll~~f~~dT~DltgieWsPdg~~l---------aVwd~~Leykv~aY--e~~lG~k~v~wsP~~qflavGsyD~~ 233 (447)
T KOG4497|consen 165 CKAWILLKEFKLDTIDLTGIEWSPDGNWL---------AVWDNVLEYKVYAY--ERGLGLKFVEWSPCNQFLAVGSYDQM 233 (447)
T ss_pred hHHHHHHHhcCCCcccccCceECCCCcEE---------EEecchhhheeeee--eeccceeEEEeccccceEEeeccchh
Confidence 00011112222334455555555444 34553222222222 22457889999999999999999998
Q ss_pred EEEEEe-----CCceee--------------------------------------------------------ee-----
Q 040361 308 LHLFSI-----NGKHLA--------------------------------------------------------SS----- 321 (413)
Q Consensus 308 i~i~d~-----~~~~~~--------------------------------------------------------~~----- 321 (413)
+++.+- -++.+. ..
T Consensus 234 lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD 313 (447)
T KOG4497|consen 234 LRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTD 313 (447)
T ss_pred hhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCC
Confidence 887432 111000 00
Q ss_pred --ecCCceeEEEecCCCCEEEEeCC--CCeEEEEECCCCceEEEecCCCCcEEEEEEccCC-eEEEEcCCCeEEEEEecC
Q 040361 322 --ESNGRLNCLELSACGQFLVCGGD--QGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEE-CFLAGTKDGCLLVYSIEN 396 (413)
Q Consensus 322 --~~~~~i~~~~~s~~~~~l~~~~~--dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~dg~i~vw~~~~ 396 (413)
.....+.-++|++|..|+++-.+ -+.+.+||++..+....+. ...+|....|+|.. +++.+.....+++|....
T Consensus 314 ~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg 392 (447)
T KOG4497|consen 314 FPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSG 392 (447)
T ss_pred CCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCC
Confidence 00113556899999999998754 3689999999877665554 46689999999984 566666667799998865
Q ss_pred C
Q 040361 397 R 397 (413)
Q Consensus 397 ~ 397 (413)
.
T Consensus 393 ~ 393 (447)
T KOG4497|consen 393 P 393 (447)
T ss_pred c
Confidence 3
No 186
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.78 E-value=8.4e-18 Score=140.04 Aligned_cols=236 Identities=17% Similarity=0.156 Sum_probs=163.5
Q ss_pred eeeecCCCCccccCCCcCCCcccC----CCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcC--------C--
Q 040361 100 FTFSGSQDPFFGVGADILSPRNVG----SPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALN--------D-- 165 (413)
Q Consensus 100 ~l~~~~~d~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~--------~-- 165 (413)
++++|+.|..+++|...-....-. ..+...-.|+..+..+.|+|+|+.|+.+|. +|.|.+|... +
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D-~g~v~lWk~~~~~~~~~d~e~ 106 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGD-GGEVFLWKQGDVRIFDADTEA 106 (434)
T ss_pred ceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCC-CceEEEEEecCcCCccccchh
Confidence 777788888877765322221111 112223345778888999999998888665 8999999765 2
Q ss_pred ------CcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeec
Q 040361 166 ------GRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCG 239 (413)
Q Consensus 166 ------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (413)
......+.+|...|..++|+||+.++++++-|.++++||+..++ ....+.+
T Consensus 107 ~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~-----------------------l~~~~~d 163 (434)
T KOG1009|consen 107 DLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQ-----------------------LLAILDD 163 (434)
T ss_pred hhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccce-----------------------eEeeccc
Confidence 23446677899999999999999999999999999999999998 6788899
Q ss_pred CCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEe---------CCC-------------CCceeeEEEccCCc
Q 040361 240 HDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLC---------HPS-------------GSALSKLAASRHGR 297 (413)
Q Consensus 240 h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~---------~~~-------------~~~v~~~~~~~~~~ 297 (413)
|...+..++|.|-++++++-+.|...+.+++...+.+.... .+. ..-...++|+|+|.
T Consensus 164 h~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~ 243 (434)
T KOG1009|consen 164 HEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGS 243 (434)
T ss_pred cccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCc
Confidence 99999999999999999988888866666654433222111 000 01234466777777
Q ss_pred EEEEECC----C-----------------------------------------------------------------CeE
Q 040361 298 IVLYGDD----D-----------------------------------------------------------------LSL 308 (413)
Q Consensus 298 ~l~~~~~----d-----------------------------------------------------------------~~i 308 (413)
++++... . ..|
T Consensus 244 llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~sv 323 (434)
T KOG1009|consen 244 LLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSV 323 (434)
T ss_pred EEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceE
Confidence 6665432 1 122
Q ss_pred EEEEeCCc-eeee--eecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceE
Q 040361 309 HLFSINGK-HLAS--SESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVV 359 (413)
Q Consensus 309 ~i~d~~~~-~~~~--~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~ 359 (413)
++||.+.. .+.. .-|-..++.++|++||.+++..+.||...+-.+...++-
T Consensus 324 yvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 324 YVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred EEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 33333211 1111 124457899999999999999999999888877765543
No 187
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.78 E-value=5.4e-16 Score=137.43 Aligned_cols=264 Identities=12% Similarity=0.102 Sum_probs=165.1
Q ss_pred ecCCcEEEEecCceE---EEEEee------ccCCCCCCceeeecC-CCCccccCCCcCCCcccCCCCcccceecceeEEE
Q 040361 70 MLDSSIVLVNQGLTL---SVKMWL------TTQLQSGGNFTFSGS-QDPFFGVGADILSPRNVGSPLAESFELGSQCFTT 139 (413)
Q Consensus 70 ~~~~~~~~~~~~~~~---~~~~~~------~~~~s~~~~~l~~~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (413)
..++.+.+|+..... .++... ...++|++++|+.++ .++.+.+|... ....+. .............+
T Consensus 9 ~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~-~~g~l~--~~~~~~~~~~p~~i 85 (330)
T PRK11028 9 PESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIA-DDGALT--FAAESPLPGSPTHI 85 (330)
T ss_pred CCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEEC-CCCceE--EeeeecCCCCceEE
Confidence 556677777753221 222221 124699999987664 45556554321 111110 11111223345678
Q ss_pred EecCCCCEEEEeecCCCeEEEEEcCC-Cc---EEEEeecCCCeEEEEEECCCCCEEEEc-cCCCcEEEEEeccccccccc
Q 040361 140 MQTPSENFLITCGNWENSFQVIALND-GR---VVQSIRQHRDVVSCVAVTTDGSILATG-SYDTTVMVWEVIRARAPEKR 214 (413)
Q Consensus 140 ~~~~~~~~l~~~g~~d~~i~i~~~~~-~~---~~~~~~~h~~~v~~~~~~~~~~~l~s~-s~dg~i~iw~~~~~~~~~~~ 214 (413)
.++|+++.++++...++.|.+|++++ +. .+..+. +.....+++++|++++++++ ..++.|.+||+.+.......
T Consensus 86 ~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~ 164 (330)
T PRK11028 86 STDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQ 164 (330)
T ss_pred EECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccccc
Confidence 89999999999887799999999964 32 233333 33446778899999988655 45699999999763311000
Q ss_pred cccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeC-CCcEEEEEccC--Ce--EEEEEeCC-C----C
Q 040361 215 VRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSK-DGTCVFHTLRE--GR--YVRSLCHP-S----G 284 (413)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~-dg~i~vwd~~~--~~--~~~~~~~~-~----~ 284 (413)
.. ...... .......++|+|++++++++.+ ++.|.+||+.. +. .+..+... . .
T Consensus 165 ~~----------------~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~ 227 (330)
T PRK11028 165 EP----------------AEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDT 227 (330)
T ss_pred CC----------------CceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCC
Confidence 00 000111 1234567899999999988876 89999999973 32 23333211 1 1
Q ss_pred CceeeEEEccCCcEEEEECC-CCeEEEEEeC--Cceeee---eecCCceeEEEecCCCCEEEEeCC-CCeEEEEECC
Q 040361 285 SALSKLAASRHGRIVLYGDD-DLSLHLFSIN--GKHLAS---SESNGRLNCLELSACGQFLVCGGD-QGQIVVRSMN 354 (413)
Q Consensus 285 ~~v~~~~~~~~~~~l~~~~~-d~~i~i~d~~--~~~~~~---~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~v~d~~ 354 (413)
.....+.++|++++++++.. ++.|.+|+++ +..+.. .........+.++|+|++|+++.. ++.|.+|++.
T Consensus 228 ~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 228 RWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred ccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 12335889999999998864 6899999995 322222 222335678999999999998775 8899999874
No 188
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=1.3e-15 Score=138.97 Aligned_cols=240 Identities=13% Similarity=0.171 Sum_probs=166.4
Q ss_pred cceeEEEEecCCCCEEEEeecCCCeEEEEEcCC----CcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccc
Q 040361 133 GSQCFTTMQTPSENFLITCGNWENSFQVIALND----GRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRA 208 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~----~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~ 208 (413)
.-...+.+++|.++++++ |..||.|.+|.-.. ......+.-|.+.|.+++|+++|.+|++|+..|.+.+|.+.++
T Consensus 205 tf~~t~~~~spn~~~~Aa-~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~ 283 (792)
T KOG1963|consen 205 TFNITCVALSPNERYLAA-GDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETG 283 (792)
T ss_pred cccceeEEeccccceEEE-eccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCC
Confidence 333566777888888777 55599999996322 2234566779999999999999999999999999999999988
Q ss_pred cccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeC---C---
Q 040361 209 RAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCH---P--- 282 (413)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~---~--- 282 (413)
+ .+-+..-.++|..+.++||+.+.+...+|..|.+-.+.+.....++.+ .
T Consensus 284 ~------------------------kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~ 339 (792)
T KOG1963|consen 284 K------------------------KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPS 339 (792)
T ss_pred C------------------------cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCcc
Confidence 6 344566778999999999999999999999999987755443333321 1
Q ss_pred ----CCCceeeEEEccCCcEEEEECCCCeEEEEEeCCc------------------------------------------
Q 040361 283 ----SGSALSKLAASRHGRIVLYGDDDLSLHLFSINGK------------------------------------------ 316 (413)
Q Consensus 283 ----~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~------------------------------------------ 316 (413)
...-.+.++++|..+.++..+..+.|.+||+-..
T Consensus 340 ~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~ 419 (792)
T KOG1963|consen 340 TKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEAR 419 (792)
T ss_pred ccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeee
Confidence 1123445566665555555555566666655210
Q ss_pred ---------------------e----eee---eecCCceeEEEec-CCC-CEEEEeCCCCeEEEEECCCCc---------
Q 040361 317 ---------------------H----LAS---SESNGRLNCLELS-ACG-QFLVCGGDQGQIVVRSMNSLE--------- 357 (413)
Q Consensus 317 ---------------------~----~~~---~~~~~~i~~~~~s-~~~-~~l~~~~~dg~i~v~d~~~~~--------- 357 (413)
. +.. ..|+..+...++. +.. ...++++.||.+++|-+.+.+
T Consensus 420 ~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W 499 (792)
T KOG1963|consen 420 IDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNW 499 (792)
T ss_pred ehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccce
Confidence 0 000 1222222233332 322 378899999999999884321
Q ss_pred -eEEEecCCCCcEEEEEEccCCeEEEEcCCCeEEEEEecCC
Q 040361 358 -VVRRYSGVGKIITSLAVTPEECFLAGTKDGCLLVYSIENR 397 (413)
Q Consensus 358 -~~~~~~~~~~~v~~~~~~~~~~~l~~~~dg~i~vw~~~~~ 397 (413)
+...-.-|..++++++|+.||.+++.+.|++|.+||..+.
T Consensus 500 ~c~~i~sy~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 500 TCKAIGSYHKTPITALCFSQDGSLLAVSFDDTITIWDYDTK 540 (792)
T ss_pred EEeeeeccccCcccchhhcCCCcEEEEecCCEEEEecCCCh
Confidence 1111112678999999999999999999999999999883
No 189
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=2e-17 Score=134.94 Aligned_cols=189 Identities=15% Similarity=0.208 Sum_probs=151.8
Q ss_pred CEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEec--CCCEEEEeeCCCcEE
Q 040361 189 SILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSV--ELDIVISGSKDGTCV 266 (413)
Q Consensus 189 ~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~--~~~~l~s~~~dg~i~ 266 (413)
..++++-..|+|++||..+++ .+..++++...++.+.|.. ....+.+|+.||+|+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~-----------------------~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr 97 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQ-----------------------LLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVR 97 (376)
T ss_pred eeEEEEecCCeEEEEeccchh-----------------------hhheecCCCCcccceEEecCCCCCeeEEeccCCeEE
Confidence 568888889999999999987 6788899999999999987 467899999999999
Q ss_pred EEEccCCeEEEEEeC--CCCCceeeEEEccCCcEEEEECC----CCeEEEEEeCCcee--ee--eecCCceeEEEecCCC
Q 040361 267 FHTLREGRYVRSLCH--PSGSALSKLAASRHGRIVLYGDD----DLSLHLFSINGKHL--AS--SESNGRLNCLELSACG 336 (413)
Q Consensus 267 vwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~--~~--~~~~~~i~~~~~s~~~ 336 (413)
+||+|.......+.. +.+.+..+++.+-.++++++|.. +-.|.+||++.... .. ..|...|+++.|+|..
T Consensus 98 ~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~ 177 (376)
T KOG1188|consen 98 LWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSD 177 (376)
T ss_pred EEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCC
Confidence 999998776655543 32345666776667888888753 56899999994333 22 4688999999999975
Q ss_pred -CEEEEeCCCCeEEEEECCCCc----eEEEecCCCCcEEEEEEccCC--eEEEEcCCCeEEEEEecCCcccc
Q 040361 337 -QFLVCGGDQGQIVVRSMNSLE----VVRRYSGVGKIITSLAVTPEE--CFLAGTKDGCLLVYSIENRRTSL 401 (413)
Q Consensus 337 -~~l~~~~~dg~i~v~d~~~~~----~~~~~~~~~~~v~~~~~~~~~--~~l~~~~dg~i~vw~~~~~~~~~ 401 (413)
++|++|+.||.|.|||+.... ++..+ .|...|.++.|..++ ++.+-+......+|+++.+....
T Consensus 178 pnlLlSGSvDGLvnlfD~~~d~EeDaL~~vi-N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~ 248 (376)
T KOG1188|consen 178 PNLLLSGSVDGLVNLFDTKKDNEEDALLHVI-NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEET 248 (376)
T ss_pred CCeEEeecccceEEeeecCCCcchhhHHHhh-cccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhh
Confidence 799999999999999997542 22333 477889999999997 77788899999999999887443
No 190
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.78 E-value=4.7e-17 Score=148.59 Aligned_cols=213 Identities=16% Similarity=0.087 Sum_probs=152.2
Q ss_pred cceeEEEEecCCCCEEEEeecCC--CeEEEEEcCCCcE--EEEeecCCCeEEEEEECCCCCEEEEcc-CCCcEEEEEec-
Q 040361 133 GSQCFTTMQTPSENFLITCGNWE--NSFQVIALNDGRV--VQSIRQHRDVVSCVAVTTDGSILATGS-YDTTVMVWEVI- 206 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~g~~d--~~i~i~~~~~~~~--~~~~~~h~~~v~~~~~~~~~~~l~s~s-~dg~i~iw~~~- 206 (413)
...+....|+|+|+.++.++..+ ..|++||+.+++. +..+.+| ...++|+|||+.|+.++ .+|.+.+|.++
T Consensus 203 ~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~ 279 (429)
T PRK01742 203 SQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVLNIYVMGA 279 (429)
T ss_pred CCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCcEEEEEEEC
Confidence 45678899999999998876533 3799999988754 3333343 34689999999888764 68877776553
Q ss_pred -cccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEe-eCCCcEEEEEccCC-eEEEEEeCCC
Q 040361 207 -RARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISG-SKDGTCVFHTLREG-RYVRSLCHPS 283 (413)
Q Consensus 207 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~-~~dg~i~vwd~~~~-~~~~~~~~~~ 283 (413)
++. ...+..+...+....|+||++.++.+ ..+|...+|++... .....+ .+.
T Consensus 280 ~~~~------------------------~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~ 334 (429)
T PRK01742 280 NGGT------------------------PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGR 334 (429)
T ss_pred CCCC------------------------eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCC
Confidence 332 34455667778899999999976654 46788888887532 222223 222
Q ss_pred CCceeeEEEccCCcEEEEECCCCeEEEEEeCCceeeeeecCCceeEEEecCCCCEEEEeCCCCeEEEEEC--CCCceEEE
Q 040361 284 GSALSKLAASRHGRIVLYGDDDLSLHLFSINGKHLASSESNGRLNCLELSACGQFLVCGGDQGQIVVRSM--NSLEVVRR 361 (413)
Q Consensus 284 ~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~--~~~~~~~~ 361 (413)
. ....|+|+|+.++..+.++ +.+||+.+..............+.|+|+|++|+.++.+|.+.+|++ .+++...+
T Consensus 335 --~-~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~ 410 (429)
T PRK01742 335 --G-YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTFLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKAR 410 (429)
T ss_pred --C-CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEE
Confidence 2 4578999999998887764 5669987443332221223456789999999999999998888875 35788888
Q ss_pred ecCCCCcEEEEEEccC
Q 040361 362 YSGVGKIITSLAVTPE 377 (413)
Q Consensus 362 ~~~~~~~v~~~~~~~~ 377 (413)
+..|.+.+...+|+|-
T Consensus 411 l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 411 LPGSDGQVKFPAWSPY 426 (429)
T ss_pred ccCCCCCCCCcccCCC
Confidence 8888888999999984
No 191
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.78 E-value=1.2e-16 Score=145.97 Aligned_cols=210 Identities=18% Similarity=0.172 Sum_probs=144.9
Q ss_pred CCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCC---CcEEEEEeccccccccccccceeecCCCceeeec
Q 040361 155 ENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYD---TTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVE 231 (413)
Q Consensus 155 d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (413)
+..|.+||..... ...+..|...+...+|+|||+.|+.++.+ ..|.+||+.++..
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~--------------------- 240 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR--------------------- 240 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce---------------------
Confidence 4689999985544 56677788899999999999999987654 3699999977641
Q ss_pred CceeeeecCCCCeEEEEEecCCCEEEEee-CCCcEEEE--EccCCeEEEEEeCCCCCceeeEEEccCCcEEEEE-CCCCe
Q 040361 232 TPFHILCGHDDIITCLYVSVELDIVISGS-KDGTCVFH--TLREGRYVRSLCHPSGSALSKLAASRHGRIVLYG-DDDLS 307 (413)
Q Consensus 232 ~~~~~~~~h~~~i~~~~~~~~~~~l~s~~-~dg~i~vw--d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~ 307 (413)
..+..+.+| ...++|+||++.|+.++ .+|.+.+| |+.++.. ..+..+ ...+....|+|+|+.|+.. ..++.
T Consensus 241 ~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~-~~~~~~~~wSpDG~~i~f~s~~~g~ 315 (429)
T PRK01742 241 KVVASFRGH---NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSG-AGNNTEPSWSPDGQSILFTSDRSGS 315 (429)
T ss_pred EEEecCCCc---cCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccC-CCCcCCEEECCCCCEEEEEECCCCC
Confidence 012223333 34689999999887654 67866555 6655554 344433 3357789999999977655 45677
Q ss_pred EEEEEeC--CceeeeeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEccCCeEE-EEc
Q 040361 308 LHLFSIN--GKHLASSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFL-AGT 384 (413)
Q Consensus 308 i~i~d~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~ 384 (413)
..+|+++ +.......+.. ....|+|+|++|+..+.++ +.+||+.+++.......+ ...++.|+|||+++ .++
T Consensus 316 ~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s 390 (429)
T PRK01742 316 PQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSS 390 (429)
T ss_pred ceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEE
Confidence 8888765 33332223332 4578999999998887765 566999988754322222 23567899998766 477
Q ss_pred CCCeEEEEEecC
Q 040361 385 KDGCLLVYSIEN 396 (413)
Q Consensus 385 ~dg~i~vw~~~~ 396 (413)
.++.+.+|.+.+
T Consensus 391 ~~g~~~~l~~~~ 402 (429)
T PRK01742 391 TQGLGKVLQLVS 402 (429)
T ss_pred cCCCceEEEEEE
Confidence 788888888743
No 192
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=1e-16 Score=148.69 Aligned_cols=250 Identities=18% Similarity=0.191 Sum_probs=176.6
Q ss_pred eEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecC---CCeEEEEEECC--CCCEEEEccCCCcEEEEEecccc-
Q 040361 136 CFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQH---RDVVSCVAVTT--DGSILATGSYDTTVMVWEVIRAR- 209 (413)
Q Consensus 136 ~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h---~~~v~~~~~~~--~~~~l~s~s~dg~i~iw~~~~~~- 209 (413)
...+.++|-...++++.. ...|++||.+.++.+..+..+ ...|+.+.+-. |..++++|+.||.|+||+-....
T Consensus 1067 pk~~~~hpf~p~i~~ad~-r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1067 PKTLKFHPFEPQIAAADD-RERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred CceeeecCCCceeEEcCC-cceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence 445667777777777553 568999999999998777643 46788888865 56789999999999999864433
Q ss_pred ccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceee
Q 040361 210 APEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSK 289 (413)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~ 289 (413)
...+.+..+.. ....+.+-.+.=.-+.|.....+|++++.-..|+|||....+.+..+....+..+++
T Consensus 1146 ~~~eLVTaw~~------------Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTa 1213 (1387)
T KOG1517|consen 1146 KKPELVTAWSS------------LSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTA 1213 (1387)
T ss_pred CCceeEEeecc------------ccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCcccee
Confidence 11221111100 001111222222446677766677777778899999999988888887766667777
Q ss_pred EEEcc-CCcEEEEECCCCeEEEEEeCCcee-----eeeecCCc--eeEEEecCCCC-EEEEeCCCCeEEEEECCCCceE-
Q 040361 290 LAASR-HGRIVLYGDDDLSLHLFSINGKHL-----ASSESNGR--LNCLELSACGQ-FLVCGGDQGQIVVRSMNSLEVV- 359 (413)
Q Consensus 290 ~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~-----~~~~~~~~--i~~~~~s~~~~-~l~~~~~dg~i~v~d~~~~~~~- 359 (413)
+.-+- .|+.+++|..||.|++||.+.... ....|... |..+.+.+.|- .|++|+.+|.|++||++.....
T Consensus 1214 LS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~ 1293 (1387)
T KOG1517|consen 1214 LSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKET 1293 (1387)
T ss_pred ecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccc
Confidence 76554 579999999999999999983221 12345555 99999998775 4999999999999999974222
Q ss_pred -EEecCC---CCcEEEEEEccCCeEEEEcCCCeEEEEEecCCc
Q 040361 360 -RRYSGV---GKIITSLAVTPEECFLAGTKDGCLLVYSIENRR 398 (413)
Q Consensus 360 -~~~~~~---~~~v~~~~~~~~~~~l~~~~dg~i~vw~~~~~~ 398 (413)
..+..| .+..+++..+++..+++++.-+.|+||++...+
T Consensus 1294 ~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~~ 1336 (1387)
T KOG1517|consen 1294 FLTIVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSGEQ 1336 (1387)
T ss_pred cceeeeccccCccceeeeeccCCCeeeecCcceEEEEecChhh
Confidence 222223 235999999999888875444999999997654
No 193
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.76 E-value=1.5e-15 Score=125.44 Aligned_cols=162 Identities=14% Similarity=0.268 Sum_probs=132.5
Q ss_pred cceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeec---CCCeEEEEEECCCCCEEEEcc--CCCcEEEE
Q 040361 129 SFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQ---HRDVVSCVAVTTDGSILATGS--YDTTVMVW 203 (413)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~l~s~s--~dg~i~iw 203 (413)
.+.+...++++.. +-++|+++- ...|+|||+.+.++++++.. +...+.++++++.+.+|+.=+ ..|.|.+|
T Consensus 83 e~~fpt~IL~Vrm--Nr~RLvV~L--ee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~ 158 (391)
T KOG2110|consen 83 EIFFPTSILAVRM--NRKRLVVCL--EESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLF 158 (391)
T ss_pred EEecCCceEEEEE--ccceEEEEE--cccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEE
Confidence 3444566666665 355666655 55699999999999988864 555677777777777887533 46899999
Q ss_pred EeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCc-EEEEEccCCeEEEEEeCC
Q 040361 204 EVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGT-CVFHTLREGRYVRSLCHP 282 (413)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~-i~vwd~~~~~~~~~~~~~ 282 (413)
|..+-+ ++..+..|++++.+++|+++|.++|++++.|+ |+|+.+.+|+.+.++...
T Consensus 159 d~~nl~-----------------------~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG 215 (391)
T KOG2110|consen 159 DTINLQ-----------------------PVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRG 215 (391)
T ss_pred Ecccce-----------------------eeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCC
Confidence 998887 78889999999999999999999999999997 589999999999998753
Q ss_pred C-CCceeeEEEccCCcEEEEECCCCeEEEEEeCCce
Q 040361 283 S-GSALSKLAASRHGRIVLYGDDDLSLHLFSINGKH 317 (413)
Q Consensus 283 ~-~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 317 (413)
. ...|.+++|++++.+|++.+..++|++|.++...
T Consensus 216 ~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 216 TYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred ceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 2 2468999999999999999999999999997443
No 194
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.76 E-value=1.2e-16 Score=129.31 Aligned_cols=203 Identities=16% Similarity=0.183 Sum_probs=166.3
Q ss_pred CCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCC
Q 040361 175 HRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELD 254 (413)
Q Consensus 175 h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~ 254 (413)
-..+|+|.+|++|...++.+-....|.||.....+. ..+..++..|...|+.++|+|..+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~--------------------w~~~htls~Hd~~vtgvdWap~sn 68 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADL--------------------WEPAHTLSEHDKIVTGVDWAPKSN 68 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCC--------------------ceeceehhhhCcceeEEeecCCCC
Confidence 457899999999999999999999999999876651 125788999999999999999999
Q ss_pred EEEEeeCCCcEEEEEccC-CeE--EEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCceee------eeecCC
Q 040361 255 IVISGSKDGTCVFHTLRE-GRY--VRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKHLA------SSESNG 325 (413)
Q Consensus 255 ~l~s~~~dg~i~vwd~~~-~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~------~~~~~~ 325 (413)
.|++++.|..-++|.... ++- ...+... +...+++.|+|.++.+++|+....|.+|-++++.-- ......
T Consensus 69 rIvtcs~drnayVw~~~~~~~WkptlvLlRi-NrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirS 147 (361)
T KOG1523|consen 69 RIVTCSHDRNAYVWTQPSGGTWKPTLVLLRI-NRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRS 147 (361)
T ss_pred ceeEccCCCCccccccCCCCeeccceeEEEe-ccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCcccc
Confidence 999999999999999843 332 2233332 457899999999999999999999999988754322 235667
Q ss_pred ceeEEEecCCCCEEEEeCCCCeEEEEECCC------------------CceEEEecCCCCcEEEEEEccCCeEEE-EcCC
Q 040361 326 RLNCLELSACGQFLVCGGDQGQIVVRSMNS------------------LEVVRRYSGVGKIITSLAVTPEECFLA-GTKD 386 (413)
Q Consensus 326 ~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d 386 (413)
.|+++.|+|++-+|++|+.|+..+||...= |+++.++....+.+..+.|+|+|..|+ .+.|
T Consensus 148 tv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hd 227 (361)
T KOG1523|consen 148 TVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHD 227 (361)
T ss_pred ceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCC
Confidence 899999999999999999999999986421 334445544567899999999998887 8999
Q ss_pred CeEEEEEecCCc
Q 040361 387 GCLLVYSIENRR 398 (413)
Q Consensus 387 g~i~vw~~~~~~ 398 (413)
..+.+=|...++
T Consensus 228 s~v~~~da~~p~ 239 (361)
T KOG1523|consen 228 STVSFVDAAGPS 239 (361)
T ss_pred CceEEeecCCCc
Confidence 999999987765
No 195
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.76 E-value=1.4e-17 Score=146.45 Aligned_cols=239 Identities=14% Similarity=0.156 Sum_probs=172.4
Q ss_pred CCCCCceee--ecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCC-----
Q 040361 94 LQSGGNFTF--SGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDG----- 166 (413)
Q Consensus 94 ~s~~~~~l~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~----- 166 (413)
|..+..+++ -.+..|.+.++.. -.+.++..-....+..+..+..+.|.|-+..-+++++.||.|++|.+..+
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el-~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~ 665 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYEL-NEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN 665 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEc-CCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcc
Confidence 334444443 2344566666532 23444555555566668889999999977665666667999999998643
Q ss_pred --cEEEEeecCCCeEEEEEECC-CCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCC
Q 040361 167 --RVVQSIRQHRDVVSCVAVTT-DGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDI 243 (413)
Q Consensus 167 --~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 243 (413)
.....+.+|...|+.+.|+| -.+.|++++.|-+|++||+.+.. ....+.+|.+.
T Consensus 666 ~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~-----------------------~~~~l~gHtdq 722 (1012)
T KOG1445|consen 666 EMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAK-----------------------LYSRLVGHTDQ 722 (1012)
T ss_pred cCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhh-----------------------hhheeccCcCc
Confidence 45577889999999999999 46789999999999999999887 56778999999
Q ss_pred eEEEEEecCCCEEEEeeCCCcEEEEEccCCe-EEEEEeCCCCCceeeEEEccCCcEEEEECCC----CeEEEEEeCC---
Q 040361 244 ITCLYVSVELDIVISGSKDGTCVFHTLREGR-YVRSLCHPSGSALSKLAASRHGRIVLYGDDD----LSLHLFSING--- 315 (413)
Q Consensus 244 i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~i~d~~~--- 315 (413)
|..++|+|+|+.+++.+.||+|++|+-+++. .++.-..+.+..-..+.|.-+|+++++.+.| .+|.+||.+.
T Consensus 723 If~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~ 802 (1012)
T KOG1445|consen 723 IFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDL 802 (1012)
T ss_pred eeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccC
Confidence 9999999999999999999999999988765 3444444444445567888899999888765 4688888752
Q ss_pred ceeeeeecC--CceeEEEecCCC-CEEEEeCCCCeEEEEECCCC
Q 040361 316 KHLASSESN--GRLNCLELSACG-QFLVCGGDQGQIVVRSMNSL 356 (413)
Q Consensus 316 ~~~~~~~~~--~~i~~~~~s~~~-~~l~~~~~dg~i~v~d~~~~ 356 (413)
..+.....+ -.+.--.+.+|. -++++|-.|..|.+|.+-..
T Consensus 803 ~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~e 846 (1012)
T KOG1445|consen 803 RPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYE 846 (1012)
T ss_pred CcceeeeecccCccccccccCCCceEEEecCCCceEEEEEecCC
Confidence 223222111 111122344454 46778888999999987643
No 196
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.76 E-value=2e-15 Score=124.69 Aligned_cols=226 Identities=14% Similarity=0.193 Sum_probs=162.3
Q ss_pred CCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCC--CcEEEEEecccccccccccccee
Q 040361 143 PSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYD--TTVMVWEVIRARAPEKRVRNMQI 220 (413)
Q Consensus 143 ~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d--g~i~iw~~~~~~~~~~~~~~~~~ 220 (413)
.++..+++.|+.|| .++|+.+..............|.-+-|+. .+++..+.+ ..++++++....
T Consensus 14 Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~----------- 79 (391)
T KOG2110|consen 14 NQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKT----------- 79 (391)
T ss_pred ccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCc-----------
Confidence 34555677788666 56777765433222222334566666764 355555444 348888876554
Q ss_pred ecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCC--CCCceeeEEEccCCcE
Q 040361 221 EAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHP--SGSALSKLAASRHGRI 298 (413)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~ 298 (413)
.+..+ .....|.++.++.+ .|+.+-++. |+|||+++.+.+.++..- +...+.++++++.+.+
T Consensus 80 ------------~ICe~-~fpt~IL~VrmNr~--RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~y 143 (391)
T KOG2110|consen 80 ------------TICEI-FFPTSILAVRMNRK--RLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCY 143 (391)
T ss_pred ------------eEEEE-ecCCceEEEEEccc--eEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCce
Confidence 23322 24567888888654 566655444 999999999999988643 3345666677777778
Q ss_pred EEEEC--CCCeEEEEEeCCceee--eeecCCceeEEEecCCCCEEEEeCCCCe-EEEEECCCCceEEEecCCC--CcEEE
Q 040361 299 VLYGD--DDLSLHLFSINGKHLA--SSESNGRLNCLELSACGQFLVCGGDQGQ-IVVRSMNSLEVVRRYSGVG--KIITS 371 (413)
Q Consensus 299 l~~~~--~d~~i~i~d~~~~~~~--~~~~~~~i~~~~~s~~~~~l~~~~~dg~-i~v~d~~~~~~~~~~~~~~--~~v~~ 371 (413)
++.-+ ..|.|.+||...-... ...|++.+.+++|+++|.+||++++.|+ ||||.+.+|+.+.+|+... ..|.+
T Consensus 144 lAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IyS 223 (391)
T KOG2110|consen 144 LAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYS 223 (391)
T ss_pred EEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEE
Confidence 88743 4689999999743332 2479999999999999999999999996 7999999999999997433 46899
Q ss_pred EEEccCCeEEE-EcCCCeEEEEEecCCc
Q 040361 372 LAVTPEECFLA-GTKDGCLLVYSIENRR 398 (413)
Q Consensus 372 ~~~~~~~~~l~-~~~dg~i~vw~~~~~~ 398 (413)
++|+|++++|+ .+..++|.+|+++...
T Consensus 224 L~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 224 LSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEECCCCCeEEEecCCCeEEEEEecccc
Confidence 99999998885 7788999999998754
No 197
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=4.3e-17 Score=141.40 Aligned_cols=251 Identities=14% Similarity=0.154 Sum_probs=176.7
Q ss_pred CCCCCCceeeecCCCCccccCCCcCCC---cccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCC---
Q 040361 93 QLQSGGNFTFSGSQDPFFGVGADILSP---RNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDG--- 166 (413)
Q Consensus 93 ~~s~~~~~l~~~~~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~--- 166 (413)
.|.|....+++++.|+++.+|..+-.. .....++-....|.++|+++++.+++..++..|- ||+|+.|++...
T Consensus 301 ~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~-Dg~I~~w~~p~n~dp 379 (577)
T KOG0642|consen 301 AFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGI-DGTIRCWNLPPNQDP 379 (577)
T ss_pred hcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeecc-CceeeeeccCCCCCc
Confidence 578888999999999999997641111 1122334445566788999999999998888555 999999976421
Q ss_pred -------cEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeec
Q 040361 167 -------RVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCG 239 (413)
Q Consensus 167 -------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (413)
.....+.||.+.|+.+++++....|++++.||+++.|+....... ....-..
T Consensus 380 ~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~---------------------~f~~~~e 438 (577)
T KOG0642|consen 380 DDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPC---------------------TFGEPKE 438 (577)
T ss_pred ccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCcc---------------------ccCCccc
Confidence 234677899999999999999999999999999999998665510 0111112
Q ss_pred CCCCeEEEEEecCC-CEEEEeeCCCcEEEEEccCCeEEEEEeCC------CCCceeeEEEccCCcEEEEECCCCeEEEEE
Q 040361 240 HDDIITCLYVSVEL-DIVISGSKDGTCVFHTLREGRYVRSLCHP------SGSALSKLAASRHGRIVLYGDDDLSLHLFS 312 (413)
Q Consensus 240 h~~~i~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d 312 (413)
|.. -.++.+-... ...++...-+.-.+.++.....+..+... ....+..+...|+..+.+++..|+.|+++|
T Consensus 439 ~g~-Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~d 517 (577)
T KOG0642|consen 439 HGY-PLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFD 517 (577)
T ss_pred cCC-cceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccc
Confidence 222 2344443222 22233333333344455544444444311 113567788899999999999999999999
Q ss_pred eC-Cceeee-eecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCC
Q 040361 313 IN-GKHLAS-SESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVG 366 (413)
Q Consensus 313 ~~-~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~ 366 (413)
.. +..+.. ..|...++++++.|+|-+|++|+.||.+++|.+....++.....|.
T Consensus 518 n~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 518 NKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred ccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeecccccc
Confidence 88 444443 5688899999999999999999999999999998777776666554
No 198
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=4.2e-17 Score=136.76 Aligned_cols=193 Identities=18% Similarity=0.185 Sum_probs=145.9
Q ss_pred EEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccc
Q 040361 137 FTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVR 216 (413)
Q Consensus 137 ~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~ 216 (413)
..++++.+|..+++.|. ||.+|||+..+...+.....|.+.|.++.|+|||+.|++-+.| ..+||+.+++..
T Consensus 148 k~vaf~~~gs~latgg~-dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~------ 219 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGT-DGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAA------ 219 (398)
T ss_pred eEEEEcCCCCEeeeccc-cceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCch------
Confidence 66788888888887555 9999999998888888888899999999999999999999999 899999998852
Q ss_pred cceeecCCCceeeecCceeee--ecCCCCeEEEEEecCC---C--EEEEeeCCCcEEEEEccCCeE---EEEEe-CCCCC
Q 040361 217 NMQIEAPRKDYVIVETPFHIL--CGHDDIITCLYVSVEL---D--IVISGSKDGTCVFHTLREGRY---VRSLC-HPSGS 285 (413)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~--~~h~~~i~~~~~~~~~---~--~l~s~~~dg~i~vwd~~~~~~---~~~~~-~~~~~ 285 (413)
+... ..-...+..+.|+.++ . +++....-+.|+.||+..... .+..+ .....
T Consensus 220 -----------------~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~ 282 (398)
T KOG0771|consen 220 -----------------LARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFK 282 (398)
T ss_pred -----------------hhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccC
Confidence 2111 2233445667777766 2 333344456677776643221 11111 11123
Q ss_pred ceeeEEEccCCcEEEEECCCCeEEEEEeCCceeee---eecCCceeEEEecCCCCEEEEeCCCCeEEEEECC
Q 040361 286 ALSKLAASRHGRIVLYGDDDLSLHLFSINGKHLAS---SESNGRLNCLELSACGQFLVCGGDQGQIVVRSMN 354 (413)
Q Consensus 286 ~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~---~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~ 354 (413)
.|++++++++|++++.|+.||.|-+++...-+... ..|...|+.+.|+|+.++++.-+.+....|..+.
T Consensus 283 siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 283 SISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred cceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 79999999999999999999999999987433322 4688899999999999999999888888887664
No 199
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.75 E-value=3.4e-16 Score=135.10 Aligned_cols=242 Identities=17% Similarity=0.194 Sum_probs=168.6
Q ss_pred ccccccCCCCCCCCCCCCCCccccCCCccEEEEEecCCCCCCeEEEEeecCCcEEEEecCceEE------EEEeeccCCC
Q 040361 22 SQIFRKKHPRRGPPIPIAHPLYFAPGSINLTSIICSTRHQPSGIVYVGMLDSSIVLVNQGLTLS------VKMWLTTQLQ 95 (413)
Q Consensus 22 ~qlf~~php~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~s 95 (413)
.|.|..-...|.+......|..|-|....+..... ........+++.+.||++.+.+...... ........++
T Consensus 35 h~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~-~~g~~~d~~~i~s~DGkf~il~k~~rVE~sv~AH~~A~~~gRW~ 113 (737)
T KOG1524|consen 35 HQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSS-GGGKGSDTLLICSNDGRFVILNKSARVERSISAHAAAISSGRWS 113 (737)
T ss_pred ceEEEeecccchhhhhhhCCcccCCcccccccccc-CCCCCcceEEEEcCCceEEEecccchhhhhhhhhhhhhhhcccC
Confidence 34444444445444443344444444444333221 2222345566677888887776433211 1122344689
Q ss_pred CCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecC
Q 040361 96 SGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQH 175 (413)
Q Consensus 96 ~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h 175 (413)
|||.-|++++.||.+++|+..-. +... .......+.+++|.|+.+.++.|. .+.+.|=.+.-...+-..+.|
T Consensus 114 ~dGtgLlt~GEDG~iKiWSrsGM---LRSt---l~Q~~~~v~c~~W~p~S~~vl~c~--g~h~~IKpL~~n~k~i~WkAH 185 (737)
T KOG1524|consen 114 PDGAGLLTAGEDGVIKIWSRSGM---LRST---VVQNEESIRCARWAPNSNSIVFCQ--GGHISIKPLAANSKIIRWRAH 185 (737)
T ss_pred CCCceeeeecCCceEEEEeccch---HHHH---HhhcCceeEEEEECCCCCceEEec--CCeEEEeecccccceeEEecc
Confidence 99999999999999999642211 1112 222367789999999999999876 577888777766677778899
Q ss_pred CCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCE
Q 040361 176 RDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDI 255 (413)
Q Consensus 176 ~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~ 255 (413)
.+-|.++.|++..+.+++|++|-..++||-... ++..-..|+.+|++++|+|+ ..
T Consensus 186 DGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~------------------------~Lf~S~~~ey~ITSva~npd-~~ 240 (737)
T KOG1524|consen 186 DGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGA------------------------NLFTSAAEEYAITSVAFNPE-KD 240 (737)
T ss_pred CcEEEEeecCccccceeecCCceeEEeecccCc------------------------ccccCChhccceeeeeeccc-cc
Confidence 999999999999999999999999999997543 46666789999999999999 55
Q ss_pred EEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEE
Q 040361 256 VISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHL 310 (413)
Q Consensus 256 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 310 (413)
++.++.. +++ +..+....|..++|++||..+++|+..|.+.+
T Consensus 241 ~~v~S~n-t~R------------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 241 YLLWSYN-TAR------------FSSPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred eeeeeee-eee------------ecCCCccceEEEEEcCCCceeeccccCceEEE
Confidence 6555432 222 44454567999999999999999999987654
No 200
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=4.8e-16 Score=141.80 Aligned_cols=263 Identities=18% Similarity=0.244 Sum_probs=190.3
Q ss_pred EEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCC---CEEEEccCCCcEEEEEecccccccccc
Q 040361 139 TMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDG---SILATGSYDTTVMVWEVIRARAPEKRV 215 (413)
Q Consensus 139 ~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~---~~l~s~s~dg~i~iw~~~~~~~~~~~~ 215 (413)
..|++|+++++.+. +..|.||...++.++..+.+|..++..+.+.|.. .++++++.||.|++||...+.......
T Consensus 22 avfSnD~k~l~~~~--~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~ 99 (792)
T KOG1963|consen 22 AVFSNDAKFLFLCT--GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFD 99 (792)
T ss_pred cccccCCcEEEEee--CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEe
Confidence 34677888888654 7899999999999999999999999999998853 467899999999999987664211000
Q ss_pred ---------c-cceee--------c---------------------------------------------CCCceeee--
Q 040361 216 ---------R-NMQIE--------A---------------------------------------------PRKDYVIV-- 230 (413)
Q Consensus 216 ---------~-~~~~~--------~---------------------------------------------~~~~~~~~-- 230 (413)
. ..+.. . +.+.+..+
T Consensus 100 ~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~ 179 (792)
T KOG1963|consen 100 NNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVH 179 (792)
T ss_pred cCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEE
Confidence 0 00000 0 00000000
Q ss_pred cCcee---------------eeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccC--C--eEEEEEeCCCCCceeeEE
Q 040361 231 ETPFH---------------ILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLRE--G--RYVRSLCHPSGSALSKLA 291 (413)
Q Consensus 231 ~~~~~---------------~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~--~--~~~~~~~~~~~~~v~~~~ 291 (413)
...+. .-..|.-.+++.+++|+++++++|..||.|.+|.--. + .....+.-|+ ..|.+++
T Consensus 180 ~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~-~~V~~L~ 258 (792)
T KOG1963|consen 180 MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHH-DEVNSLS 258 (792)
T ss_pred eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecc-cccceeE
Confidence 00000 0112556689999999999999999999999996422 1 1223344443 4899999
Q ss_pred EccCCcEEEEECCCCeEEEEEeCCceeee-eecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCC-----
Q 040361 292 ASRHGRIVLYGDDDLSLHLFSINGKHLAS-SESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGV----- 365 (413)
Q Consensus 292 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~----- 365 (413)
|+++|.+|++|+.++.+.+|.+....... -...++|..+.++||+.+.+....|+.|.+..+.+.+....+.+.
T Consensus 259 fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~ 338 (792)
T KOG1963|consen 259 FSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTP 338 (792)
T ss_pred EecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCc
Confidence 99999999999999999999998544333 356789999999999999999999999999988776554444322
Q ss_pred ------CCcEEEEEEccC-CeEEEEcCCCeEEEEEecCCccccccc
Q 040361 366 ------GKIITSLAVTPE-ECFLAGTKDGCLLVYSIENRRTSLPRN 404 (413)
Q Consensus 366 ------~~~v~~~~~~~~-~~~l~~~~dg~i~vw~~~~~~~~~~~~ 404 (413)
.+-.+.++++|. +..+-.+..|.|.+||+.+.+......
T Consensus 339 ~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~ 384 (792)
T KOG1963|consen 339 STKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQ 384 (792)
T ss_pred cccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEE
Confidence 334677889995 555568999999999999887665433
No 201
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.74 E-value=7.1e-18 Score=142.81 Aligned_cols=229 Identities=13% Similarity=0.193 Sum_probs=189.1
Q ss_pred eeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccc
Q 040361 135 QCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKR 214 (413)
Q Consensus 135 ~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~ 214 (413)
....+.|+-+|.++++.|. .|.|-.+|+.++++...+. -...|..+.|-.+.++++++- ...+.+||-...+
T Consensus 131 GPY~~~ytrnGrhlllgGr-KGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~GtE----- 202 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGR-KGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVAQ-KKYVYVYDNNGTE----- 202 (545)
T ss_pred CCeeeeecCCccEEEecCC-ccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhhh-hceEEEecCCCcE-----
Confidence 3467788899999999665 9999999999999988886 356788999988888887764 4678999965433
Q ss_pred cccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEcc
Q 040361 215 VRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASR 294 (413)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~ 294 (413)
++.+..| ..|..+.|.|..-+|++++..|.++.-|+.+|+.+..+.... ..+..+.-+|
T Consensus 203 -------------------lHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~-G~~~vm~qNP 261 (545)
T KOG1272|consen 203 -------------------LHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGA-GRTDVMKQNP 261 (545)
T ss_pred -------------------Eeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccC-CccchhhcCC
Confidence 5566655 457889999988889999999999999999999999887653 4788889999
Q ss_pred CCcEEEEECCCCeEEEEEeCCcee--eeeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEE
Q 040361 295 HGRIVLYGDDDLSLHLFSINGKHL--ASSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSL 372 (413)
Q Consensus 295 ~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~ 372 (413)
-+..+-.|..+|+|.+|..+.+.. ....|.++|.++++.++|+|+++.+.|..++|||++....+.++.. .-+...+
T Consensus 262 ~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~l 340 (545)
T KOG1272|consen 262 YNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNL 340 (545)
T ss_pred ccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccc
Confidence 999999999999999999984433 3467999999999999999999999999999999999887777654 4567788
Q ss_pred EEccCCeEEEEcCCCeEEEEEe
Q 040361 373 AVTPEECFLAGTKDGCLLVYSI 394 (413)
Q Consensus 373 ~~~~~~~~l~~~~dg~i~vw~~ 394 (413)
++|..| +|+.+....+.+|.=
T Consensus 341 s~Sqkg-lLA~~~G~~v~iw~d 361 (545)
T KOG1272|consen 341 SLSQKG-LLALSYGDHVQIWKD 361 (545)
T ss_pred cccccc-ceeeecCCeeeeehh
Confidence 899666 556666677999953
No 202
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=5.1e-16 Score=129.09 Aligned_cols=241 Identities=11% Similarity=0.086 Sum_probs=177.2
Q ss_pred ceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCC------CcEEEEeec-CCCeEEEEEECCCCCEEEEccCCCcEEE
Q 040361 130 FELGSQCFTTMQTPSENFLITCGNWENSFQVIALND------GRVVQSIRQ-HRDVVSCVAVTTDGSILATGSYDTTVMV 202 (413)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~------~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~s~dg~i~i 202 (413)
++|.+.+.++.|+.+++.|+. |..|..+++|+++. .+++..... |...|.|++|....+.|++|..+++|..
T Consensus 53 ~~H~GCiNAlqFS~N~~~L~S-GGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~ 131 (609)
T KOG4227|consen 53 REHTGCINALQFSHNDRFLAS-GGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIK 131 (609)
T ss_pred hhhccccceeeeccCCeEEee-cCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEe
Confidence 445566667778877666655 55599999999853 355555544 6689999999998999999999999999
Q ss_pred EEeccccccccccccceeecCCCceeeecCceeeeecCC---CCeEEEEEecCCCEEEEeeCCCcEEEEEccCCe-EEEE
Q 040361 203 WEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHD---DIITCLYVSVELDIVISGSKDGTCVFHTLREGR-YVRS 278 (413)
Q Consensus 203 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~ 278 (413)
.|+++.+ .+..+ .|. +.|+.+..+|-.+.|++.+.++.|.+||.+... ....
T Consensus 132 HDiEt~q-----------------------si~V~-~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~ 187 (609)
T KOG4227|consen 132 HDIETKQ-----------------------SIYVA-NENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISL 187 (609)
T ss_pred eecccce-----------------------eeeee-cccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCce
Confidence 9999887 33333 343 489999999999999999999999999998765 2222
Q ss_pred E-eCCCCCceeeEEEccC-CcEEEEECCCCeEEEEEeCCceee--ee----e---cCCceeEEEecCCCCEEEEeCCCCe
Q 040361 279 L-CHPSGSALSKLAASRH-GRIVLYGDDDLSLHLFSINGKHLA--SS----E---SNGRLNCLELSACGQFLVCGGDQGQ 347 (413)
Q Consensus 279 ~-~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~--~~----~---~~~~i~~~~~s~~~~~l~~~~~dg~ 347 (413)
+ ....+.....+.|+|. ..+|++.+..+-+.+||.+..... .. . .......+.|+|+|..+++--....
T Consensus 188 ~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~ 267 (609)
T KOG4227|consen 188 VLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKC 267 (609)
T ss_pred eeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCC
Confidence 2 1222446778889984 678888898999999999843221 11 1 1223467889999998887665555
Q ss_pred EEEEECCCCce-EEEecCC-------CCcEEEEEEccCCeEEEEcCCCeEEEEEecC
Q 040361 348 IVVRSMNSLEV-VRRYSGV-------GKIITSLAVTPEECFLAGTKDGCLLVYSIEN 396 (413)
Q Consensus 348 i~v~d~~~~~~-~~~~~~~-------~~~v~~~~~~~~~~~l~~~~dg~i~vw~~~~ 396 (413)
-.+||+.+.++ +.++. | ...+.+++|..|-.+++|+.+-.|++|.+..
T Consensus 268 P~~~D~~S~R~~V~k~D-~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~ 323 (609)
T KOG4227|consen 268 PLYFDFISQRCFVLKSD-HNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPR 323 (609)
T ss_pred CEEeeeecccceeEecc-CCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCC
Confidence 66788877443 33332 2 2357889999887788899999999999865
No 203
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.74 E-value=5.3e-16 Score=140.92 Aligned_cols=226 Identities=13% Similarity=0.122 Sum_probs=167.0
Q ss_pred CeEEEEEcCCCcEEEEeecCCCeEEEEEECC-CCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCce
Q 040361 156 NSFQVIALNDGRVVQSIRQHRDVVSCVAVTT-DGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPF 234 (413)
Q Consensus 156 ~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (413)
+.+.+|++.+.......-.....|+|+.|+| +..+++.|..+|.|.+||++.+...... ..-
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s-----------------~ls 284 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPS-----------------GLS 284 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCc-----------------ccc
Confidence 4799999977633333334678999999999 5778888999999999999887632100 012
Q ss_pred eeeecCCCCeEEEEEecCCCE--EEEeeCCCcEEEEEccCCeEEE-E-----Ee-----CCCCCceeeEEEcc-CCcEEE
Q 040361 235 HILCGHDDIITCLYVSVELDI--VISGSKDGTCVFHTLREGRYVR-S-----LC-----HPSGSALSKLAASR-HGRIVL 300 (413)
Q Consensus 235 ~~~~~h~~~i~~~~~~~~~~~--l~s~~~dg~i~vwd~~~~~~~~-~-----~~-----~~~~~~v~~~~~~~-~~~~l~ 300 (413)
.....|..+++.+.|..+..- +++++.||.|..|+++.-.... . .. ......++++.|.+ +...++
T Consensus 285 ~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~Fi 364 (555)
T KOG1587|consen 285 ALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFI 364 (555)
T ss_pred cccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEE
Confidence 234568999999999875544 9999999999999887543311 1 11 01124678889988 567899
Q ss_pred EECCCCeEEEEEeCCc---e------e-eeeecCCceeEEEecCCCCEEEEeCCCCeEEEEECC-CCceEEEecCCCCcE
Q 040361 301 YGDDDLSLHLFSINGK---H------L-ASSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMN-SLEVVRRYSGVGKII 369 (413)
Q Consensus 301 ~~~~d~~i~i~d~~~~---~------~-~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~-~~~~~~~~~~~~~~v 369 (413)
+|+.+|.|.-=+-.+. . + ....|.++|.++.++|-+..++..+.|..++||... ...++..+..+...|
T Consensus 365 VGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v 444 (555)
T KOG1587|consen 365 VGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYV 444 (555)
T ss_pred EEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhcccee
Confidence 9999999887444321 1 1 123578999999999998766655559999999988 667777788788889
Q ss_pred EEEEEccCC--eEEEEcCCCeEEEEEecCCc
Q 040361 370 TSLAVTPEE--CFLAGTKDGCLLVYSIENRR 398 (413)
Q Consensus 370 ~~~~~~~~~--~~l~~~~dg~i~vw~~~~~~ 398 (413)
++++|||.. .|+++..||.|.+||+....
T Consensus 445 ~~vaWSptrpavF~~~d~~G~l~iWDLl~~~ 475 (555)
T KOG1587|consen 445 TDVAWSPTRPAVFATVDGDGNLDIWDLLQDD 475 (555)
T ss_pred eeeEEcCcCceEEEEEcCCCceehhhhhccc
Confidence 999999983 56679999999999997643
No 204
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.74 E-value=1.5e-15 Score=138.33 Aligned_cols=216 Identities=13% Similarity=0.092 Sum_probs=149.1
Q ss_pred cceeEEEEecCCCCEEEEeecC--CCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEc-cCCC--cEEEEEecc
Q 040361 133 GSQCFTTMQTPSENFLITCGNW--ENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATG-SYDT--TVMVWEVIR 207 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~g~~--d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-s~dg--~i~iw~~~~ 207 (413)
...+....|+|+|+.++.+... +..|++|++.+++.... ....+.+..+.|+|||+.|+.. +.+| .|.+||+.+
T Consensus 198 ~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~t 276 (429)
T PRK03629 198 PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS 276 (429)
T ss_pred CCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCC
Confidence 4467889999999999876532 34799999988764332 2233344568999999988754 4455 488888876
Q ss_pred ccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCC-Cc--EEEEEccCCeEEEEEeCCCC
Q 040361 208 ARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKD-GT--CVFHTLREGRYVRSLCHPSG 284 (413)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~d-g~--i~vwd~~~~~~~~~~~~~~~ 284 (413)
+. ...+..+...+....|+|+++.|+..+.+ +. |.++|+.+++.. .+... .
T Consensus 277 g~------------------------~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~-~ 330 (429)
T PRK03629 277 GQ------------------------IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWE-G 330 (429)
T ss_pred CC------------------------EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecC-C
Confidence 65 23333445567889999999988766653 44 445566665443 33322 2
Q ss_pred CceeeEEEccCCcEEEEECCC---CeEEEEEeCCceeeeeecCCceeEEEecCCCCEEEEeCCCCe---EEEEECCCCce
Q 040361 285 SALSKLAASRHGRIVLYGDDD---LSLHLFSINGKHLASSESNGRLNCLELSACGQFLVCGGDQGQ---IVVRSMNSLEV 358 (413)
Q Consensus 285 ~~v~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~---i~v~d~~~~~~ 358 (413)
.......|+|+|+.++..+.+ ..|++||+.+................|+|||++|+.++.++. +.++++ ++..
T Consensus 331 ~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~ 409 (429)
T PRK03629 331 SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRF 409 (429)
T ss_pred CCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCCCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCC
Confidence 345678999999998776543 368889988554444333333456789999999998887664 677777 4566
Q ss_pred EEEecCCCCcEEEEEEcc
Q 040361 359 VRRYSGVGKIITSLAVTP 376 (413)
Q Consensus 359 ~~~~~~~~~~v~~~~~~~ 376 (413)
...+.+|.+.+...+|+|
T Consensus 410 ~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 410 KARLPATDGQVKFPAWSP 427 (429)
T ss_pred eEECccCCCCcCCcccCC
Confidence 677878888899999987
No 205
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.73 E-value=3.5e-16 Score=138.52 Aligned_cols=267 Identities=16% Similarity=0.190 Sum_probs=197.0
Q ss_pred EEEecCCCCCCeEEEEeecCCcEEEEecCceEEEE-------EeeccCCCCCCceeeecCCCCccccCCCcCCCcccCCC
Q 040361 53 SIICSTRHQPSGIVYVGMLDSSIVLVNQGLTLSVK-------MWLTTQLQSGGNFTFSGSQDPFFGVGADILSPRNVGSP 125 (413)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~ 125 (413)
.+...++.|++.-+.++.. +.+++++.+...... ...+.++|.||+..++|+.|..+.+| +++..+ .
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W----~~klEG-~ 87 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIW----TSKLEG-I 87 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEe----cccccc-e
Confidence 4455567777766655544 578888766543322 44566899999999999999999995 433211 1
Q ss_pred CcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEe
Q 040361 126 LAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEV 205 (413)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~ 205 (413)
-...|...+-++.|.|-...|+.++- ...-+|+.+...+.+ . .....|.+++|..||++|+-|-.||+|.+-+-
T Consensus 88 --LkYSH~D~IQCMsFNP~~h~LasCsL--sdFglWS~~qK~V~K-~-kss~R~~~CsWtnDGqylalG~~nGTIsiRNk 161 (1081)
T KOG1538|consen 88 --LKYSHNDAIQCMSFNPITHQLASCSL--SDFGLWSPEQKSVSK-H-KSSSRIICCSWTNDGQYLALGMFNGTISIRNK 161 (1081)
T ss_pred --eeeccCCeeeEeecCchHHHhhhcch--hhccccChhhhhHHh-h-hhheeEEEeeecCCCcEEEEeccCceEEeecC
Confidence 13456778888999999998888774 346678765433321 1 13567899999999999999999999998854
Q ss_pred ccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCC-----CEEEEeeCCCcEEEEEccCCeEEEEEe
Q 040361 206 IRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVEL-----DIVISGSKDGTCVFHTLREGRYVRSLC 280 (413)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~-----~~l~s~~~dg~i~vwd~~~~~~~~~~~ 280 (413)
..... -.+..-.+..++|.+++|+|.. ..++......++..|.+ +|+.+..-.
T Consensus 162 ~gEek---------------------~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-sG~~Igk~r 219 (1081)
T KOG1538|consen 162 NGEEK---------------------VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-SGKQIGKDR 219 (1081)
T ss_pred CCCcc---------------------eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe-cceeecccc
Confidence 32220 0123334577899999999854 46778888888888887 565554222
Q ss_pred CCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCceeeee-ecCCceeEEEecCCCCEEEEeCCCCeEEEEECC
Q 040361 281 HPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKHLASS-ESNGRLNCLELSACGQFLVCGGDQGQIVVRSMN 354 (413)
Q Consensus 281 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~ 354 (413)
.- +....++.+-++|.+++.|+.|+.+++|.-+|-.+.+. ..+..|..++..|++++++.|+.||+|-.|++.
T Consensus 220 ~L-~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 220 AL-NFDPCCISYFTNGEYILLGGSDKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred cC-CCCchhheeccCCcEEEEccCCCceEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 11 33567899999999999999999999999988877764 467899999999999999999999999999874
No 206
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=2.1e-16 Score=136.75 Aligned_cols=214 Identities=21% Similarity=0.350 Sum_probs=156.2
Q ss_pred EEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEE
Q 040361 168 VVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCL 247 (413)
Q Consensus 168 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~ 247 (413)
..+.+.||++.|+|+.|+.||.+|++||.|-.+.|||.-..+. ....-.+|...|.++
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kl----------------------lhsI~TgHtaNIFsv 99 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKL----------------------LHSISTGHTANIFSV 99 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcce----------------------eeeeecccccceeEE
Confidence 3467889999999999999999999999999999999875551 223346899999999
Q ss_pred EEec--CCCEEEEeeCCCcEEEEEccCCe----------EEEEEeCCCCCceeeEEEccCC-cEEEEECCCCeEEEEEeC
Q 040361 248 YVSV--ELDIVISGSKDGTCVFHTLREGR----------YVRSLCHPSGSALSKLAASRHG-RIVLYGDDDLSLHLFSIN 314 (413)
Q Consensus 248 ~~~~--~~~~l~s~~~dg~i~vwd~~~~~----------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~ 314 (413)
.|-| +.+++++|..|..|+++|+...+ ..+.+..+ ...|..++..|++ +.+.+++.||+++-||++
T Consensus 100 KFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~ch-t~rVKria~~p~~PhtfwsasEDGtirQyDiR 178 (758)
T KOG1310|consen 100 KFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCH-TDRVKRIATAPNGPHTFWSASEDGTIRQYDIR 178 (758)
T ss_pred eeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhh-hhhhhheecCCCCCceEEEecCCcceeeeccc
Confidence 9998 45689999999999999997421 12223333 3467888999987 889999999999999998
Q ss_pred Cceeee------------eecCCceeEEEecCCC-CEEEEeCCCCeEEEEECCC--------Cc----------eEEEec
Q 040361 315 GKHLAS------------SESNGRLNCLELSACG-QFLVCGGDQGQIVVRSMNS--------LE----------VVRRYS 363 (413)
Q Consensus 315 ~~~~~~------------~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~v~d~~~--------~~----------~~~~~~ 363 (413)
....-. ...--...|+.++|.. .+|++|+.|-..++||.+. +. ++..+.
T Consensus 179 Eph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~ 258 (758)
T KOG1310|consen 179 EPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFS 258 (758)
T ss_pred CCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheec
Confidence 421110 0112346788999975 6899999999999999431 11 122221
Q ss_pred -CCC-----------CcEEEEEEccCCe-EEEEcCCCeEEEEEecCCccccccc
Q 040361 364 -GVG-----------KIITSLAVTPEEC-FLAGTKDGCLLVYSIENRRTSLPRN 404 (413)
Q Consensus 364 -~~~-----------~~v~~~~~~~~~~-~l~~~~dg~i~vw~~~~~~~~~~~~ 404 (413)
+|. ..++-+.|+|+|. +|+.-..-.|+++|+..++...+..
T Consensus 259 p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y~ 312 (758)
T KOG1310|consen 259 PGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPYF 312 (758)
T ss_pred CccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceeec
Confidence 221 1256788999974 5543334579999999988776543
No 207
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=3.1e-15 Score=136.43 Aligned_cols=220 Identities=17% Similarity=0.139 Sum_probs=149.1
Q ss_pred ecceeEEEEecCCCCEEEEeecCC--CeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEE-EccCCCcEEEEEeccc
Q 040361 132 LGSQCFTTMQTPSENFLITCGNWE--NSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILA-TGSYDTTVMVWEVIRA 208 (413)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~g~~d--~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~s~dg~i~iw~~~~~ 208 (413)
....+.+..|+|+|+.++++...+ ..|++||+.+++... +....+.+...+|+|||+.|+ +.+.+|...+|.++..
T Consensus 194 ~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~ 272 (427)
T PRK02889 194 SPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNAD 272 (427)
T ss_pred CCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECC
Confidence 345677889999999998876533 369999998887643 333445667899999999886 5677888888876532
Q ss_pred cccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeC-CCcEEEEEc--cCCeEEEEEeCCCCC
Q 040361 209 RAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSK-DGTCVFHTL--REGRYVRSLCHPSGS 285 (413)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~-dg~i~vwd~--~~~~~~~~~~~~~~~ 285 (413)
.. ....+..+........|+||++.++..+. +|...+|.+ ..+.. ..+... +.
T Consensus 273 ~~----------------------~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~-g~ 328 (427)
T PRK02889 273 GS----------------------GLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFT-GS 328 (427)
T ss_pred CC----------------------CcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEecC-CC
Confidence 21 13334445555667889999998775553 566666655 34433 222222 22
Q ss_pred ceeeEEEccCCcEEEEECCCC---eEEEEEeCCceeeeeecCCceeEEEecCCCCEEEEeCCCC---eEEEEECCCCceE
Q 040361 286 ALSKLAASRHGRIVLYGDDDL---SLHLFSINGKHLASSESNGRLNCLELSACGQFLVCGGDQG---QIVVRSMNSLEVV 359 (413)
Q Consensus 286 ~v~~~~~~~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~i~v~d~~~~~~~ 359 (413)
......|+|+|+.|+..+.++ .|++||+.+................|+|||++|+.++.++ .+++.++ ++...
T Consensus 329 ~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~ 407 (427)
T PRK02889 329 YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIK 407 (427)
T ss_pred CcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCCCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCce
Confidence 344678999999998776544 6999999854444433333456789999999988876543 4666666 46666
Q ss_pred EEecCCCCcEEEEEEccC
Q 040361 360 RRYSGVGKIITSLAVTPE 377 (413)
Q Consensus 360 ~~~~~~~~~v~~~~~~~~ 377 (413)
..+..+.+.+...+|+|-
T Consensus 408 ~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 408 QRLSVQGGDVREPSWGPF 425 (427)
T ss_pred EEeecCCCCCCCCccCCC
Confidence 666666677788888873
No 208
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.72 E-value=1.1e-15 Score=132.09 Aligned_cols=218 Identities=18% Similarity=0.192 Sum_probs=151.1
Q ss_pred eEEEEecCCCCEEEEeecCCCeEEEEEcCCCcE----EEEeecCCCeEEEEEE-----CCCCCEEEEccCCCcEEEEEec
Q 040361 136 CFTTMQTPSENFLITCGNWENSFQVIALNDGRV----VQSIRQHRDVVSCVAV-----TTDGSILATGSYDTTVMVWEVI 206 (413)
Q Consensus 136 ~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~----~~~~~~h~~~v~~~~~-----~~~~~~l~s~s~dg~i~iw~~~ 206 (413)
.+....+-.|++|++.- ...+++|+...+.. +....-.....+|-+| .|++--|+.|-.-|.|.+.|..
T Consensus 126 ~~~~~~~~~gd~lcFnv--g~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~ 203 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNV--GRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI 203 (636)
T ss_pred eeeccccCCCCEEEEec--CCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecch
Confidence 34455556677777643 45788888764322 1111111222334444 3456668888888999988876
Q ss_pred cccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCC-CEEEEeeCCCcEEEEEccC-------------
Q 040361 207 RARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVEL-DIVISGSKDGTCVFHTLRE------------- 272 (413)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~-~~l~s~~~dg~i~vwd~~~------------- 272 (413)
.... .+.+ -....-....++|+.|-|.. ..++.+-.+|.+++||...
T Consensus 204 ~~~~-sklf------------------ne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k 264 (636)
T KOG2394|consen 204 NFEV-SKLF------------------NEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALK 264 (636)
T ss_pred hhHH-HHhh------------------hhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccC
Confidence 5220 0000 00001123689999999844 4677778899999997631
Q ss_pred -CeE--------------EEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCceeeee--ecCCceeEEEecCC
Q 040361 273 -GRY--------------VRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKHLASS--ESNGRLNCLELSAC 335 (413)
Q Consensus 273 -~~~--------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~--~~~~~i~~~~~s~~ 335 (413)
+.. +..+... ...|+..+|+|||++||+.+.||.++|||.....+.-. ..-+...|++||||
T Consensus 265 ~~~~f~i~t~ksk~~rNPv~~w~~~-~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPD 343 (636)
T KOG2394|consen 265 DGDQFAILTSKSKKTRNPVARWHIG-EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPD 343 (636)
T ss_pred CCCeeEEeeeeccccCCccceeEec-cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCC
Confidence 110 1111111 23688899999999999999999999999986665442 34578999999999
Q ss_pred CCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEc
Q 040361 336 GQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVT 375 (413)
Q Consensus 336 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~ 375 (413)
|+||++|++|.-|.||.+...+.+..-++|.+.|+.++|.
T Consensus 344 GKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 344 GKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred ccEEEecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence 9999999999999999999999999999999999999998
No 209
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=9.2e-15 Score=134.06 Aligned_cols=213 Identities=15% Similarity=0.170 Sum_probs=149.0
Q ss_pred eEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccC---CCcEEEEEeccccccccccccceeecCCCceeeecCc
Q 040361 157 SFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSY---DTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETP 233 (413)
Q Consensus 157 ~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (413)
.|.++|.. +...+.+..|...+...+|+|||+.|+..+. +..|.+||+.++.
T Consensus 183 ~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~------------------------ 237 (435)
T PRK05137 183 RLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQ------------------------ 237 (435)
T ss_pred EEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCc------------------------
Confidence 78888874 4555667778889999999999999888753 4689999998775
Q ss_pred eeeeecCCCCeEEEEEecCCCEEE-EeeCCCc--EEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECC-C--Ce
Q 040361 234 FHILCGHDDIITCLYVSVELDIVI-SGSKDGT--CVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDD-D--LS 307 (413)
Q Consensus 234 ~~~~~~h~~~i~~~~~~~~~~~l~-s~~~dg~--i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--~~ 307 (413)
...+..+.+.+...+|+||++.++ +.+.++. |++||+.++.... +... ........|+|+|+.|+..+. + ..
T Consensus 238 ~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-Lt~~-~~~~~~~~~spDG~~i~f~s~~~g~~~ 315 (435)
T PRK05137 238 RELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTR-LTDS-PAIDTSPSYSPDGSQIVFESDRSGSPQ 315 (435)
T ss_pred EEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEE-ccCC-CCccCceeEcCCCCEEEEEECCCCCCe
Confidence 234445666777899999998765 5556655 7778988776543 4332 234567899999998877653 3 36
Q ss_pred EEEEEeCCceeeee-ecCCceeEEEecCCCCEEEEeCCC---CeEEEEECCCCceEEEecCCCCcEEEEEEccCCeEEE-
Q 040361 308 LHLFSINGKHLASS-ESNGRLNCLELSACGQFLVCGGDQ---GQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFLA- 382 (413)
Q Consensus 308 i~i~d~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~d---g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~- 382 (413)
|+++|+.+...... ...+.+....|+|+|++|+....+ ..|.+||+..+.. ..+. ....+..+.|+|||+.++
T Consensus 316 Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~ 393 (435)
T PRK05137 316 LYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMF 393 (435)
T ss_pred EEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEE
Confidence 88888886544443 234556778999999999876543 3688899865443 3343 233467889999987653
Q ss_pred -EcCC-----CeEEEEEecCCc
Q 040361 383 -GTKD-----GCLLVYSIENRR 398 (413)
Q Consensus 383 -~~~d-----g~i~vw~~~~~~ 398 (413)
.... ..|+++++..++
T Consensus 394 ~~~~~~~~~~~~L~~~dl~g~~ 415 (435)
T PRK05137 394 FRQTPGSGGAPKLYTVDLTGRN 415 (435)
T ss_pred EEccCCCCCcceEEEEECCCCc
Confidence 3222 357888886653
No 210
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=2.1e-15 Score=131.34 Aligned_cols=246 Identities=15% Similarity=0.218 Sum_probs=178.6
Q ss_pred CCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCC--CeEEEEEECCCCCE------------
Q 040361 125 PLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHR--DVVSCVAVTTDGSI------------ 190 (413)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~------------ 190 (413)
.+.+.+++...+..+..+|||++++++|.+.-.|++||+.+-.+. ++.|. ..|.-.-++.|-..
T Consensus 43 eLiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiLsDD~SK~v~L~~DR~Ief 120 (703)
T KOG2321|consen 43 ELIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEILSDDYSKSVFLQNDRTIEF 120 (703)
T ss_pred HHHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceee--eeecccccceeEEEeccchhhheEeecCceeee
Confidence 355677888899999999999999999999999999998654322 22221 22222222222222
Q ss_pred ---------------------------EEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCC
Q 040361 191 ---------------------------LATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDI 243 (413)
Q Consensus 191 ---------------------------l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 243 (413)
|+.++....|+-++++.++ -+..+....+.
T Consensus 121 Hak~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGr-----------------------fL~P~~~~~~~ 177 (703)
T KOG2321|consen 121 HAKYGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGR-----------------------FLNPFETDSGE 177 (703)
T ss_pred hhhcCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccc-----------------------ccccccccccc
Confidence 3333333345555555554 34445556688
Q ss_pred eEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCC----------CceeeEEEccCCcEEEEECCCCeEEEEEe
Q 040361 244 ITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSG----------SALSKLAASRHGRIVLYGDDDLSLHLFSI 313 (413)
Q Consensus 244 i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~----------~~v~~~~~~~~~~~l~~~~~d~~i~i~d~ 313 (413)
++++..++-..+|++|+.+|.|-.||.+....+..+..... ..|+++.|+.+|-.+++|+.+|.+.+||+
T Consensus 178 lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDL 257 (703)
T KOG2321|consen 178 LNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDL 257 (703)
T ss_pred ceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEc
Confidence 99999999999999999999999999998877766653221 24899999999999999999999999999
Q ss_pred CCce-eeee--ecCCceeEEEecCC--CCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEccC-CeEEEEcCCC
Q 040361 314 NGKH-LASS--ESNGRLNCLELSAC--GQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPE-ECFLAGTKDG 387 (413)
Q Consensus 314 ~~~~-~~~~--~~~~~i~~~~~s~~--~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~dg 387 (413)
+... +... ...-+|..+.|.+. +..+++. ....++|||-.+|+....+. ....++.+++-|+ |.++++-.++
T Consensus 258 Ra~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiE-pt~~lND~C~~p~sGm~f~Ane~~ 335 (703)
T KOG2321|consen 258 RASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIE-PTSDLNDFCFVPGSGMFFTANESS 335 (703)
T ss_pred ccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeecc-ccCCcCceeeecCCceEEEecCCC
Confidence 9543 3333 34567888888765 3444444 55689999999999998887 4556999999999 7888888888
Q ss_pred eEEEEEecCC
Q 040361 388 CLLVYSIENR 397 (413)
Q Consensus 388 ~i~vw~~~~~ 397 (413)
.+..|=+..-
T Consensus 336 ~m~~yyiP~L 345 (703)
T KOG2321|consen 336 KMHTYYIPSL 345 (703)
T ss_pred cceeEEcccc
Confidence 8887776653
No 211
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.71 E-value=5.6e-15 Score=139.36 Aligned_cols=256 Identities=13% Similarity=0.091 Sum_probs=173.0
Q ss_pred cceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCC-------cEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEE
Q 040361 129 SFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDG-------RVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVM 201 (413)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~-------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~ 201 (413)
..+|...+...+.+++..-++++|+.||+|++|++..- +...++.-....+.++...+.++.+|.++.||.|+
T Consensus 1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~ 1123 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVR 1123 (1431)
T ss_pred hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEE
Confidence 34455667778888887677777888999999997531 22233333567899999999999999999999999
Q ss_pred EEEeccccccccccccceeecCCCceeeecCceeeeecCC-CC-eEEEEEec-CCC-EEEEeeCCCcEEEEEccCCeEEE
Q 040361 202 VWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHD-DI-ITCLYVSV-ELD-IVISGSKDGTCVFHTLREGRYVR 277 (413)
Q Consensus 202 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~-i~~~~~~~-~~~-~l~s~~~dg~i~vwd~~~~~~~~ 277 (413)
+.+++....... . .........+. +. |..-++.. ... .++.+..-+.|..||+++.....
T Consensus 1124 ~~~id~~~~~~~-~---------------~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w 1187 (1431)
T KOG1240|consen 1124 VLRIDHYNVSKR-V---------------ATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAW 1187 (1431)
T ss_pred EEEccccccccc-e---------------eeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHH
Confidence 999976321100 0 00111122222 22 23333332 223 67888889999999999887776
Q ss_pred EEeCC-CCCceeeEEEccCCcEEEEECCCCeEEEEEeC-Cceeeee--ecCCceeEEEecCCC---CEEEEe-C-CCCeE
Q 040361 278 SLCHP-SGSALSKLAASRHGRIVLYGDDDLSLHLFSIN-GKHLASS--ESNGRLNCLELSACG---QFLVCG-G-DQGQI 348 (413)
Q Consensus 278 ~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~--~~~~~i~~~~~s~~~---~~l~~~-~-~dg~i 348 (413)
+++.. ..+.|++++.+|.++.++.|+..|.+.+||++ +..+... .+..+++.+..+|-. ...+++ . ..+.|
T Consensus 1188 ~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nev 1267 (1431)
T KOG1240|consen 1188 RLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEV 1267 (1431)
T ss_pred hhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCce
Confidence 66532 23479999999999999999999999999999 4444443 455678888777643 344444 3 57789
Q ss_pred EEEECCCCceEEEecCC-----------C---------CcEEEEEEccCCeEEEEcCCCeEEEEEecCCccc
Q 040361 349 VVRSMNSLEVVRRYSGV-----------G---------KIITSLAVTPEECFLAGTKDGCLLVYSIENRRTS 400 (413)
Q Consensus 349 ~v~d~~~~~~~~~~~~~-----------~---------~~v~~~~~~~~~~~l~~~~dg~i~vw~~~~~~~~ 400 (413)
.+|++.+|.....+-.. . ..+.+..-.+.+.+++|+.|..|+.||....+..
T Consensus 1268 s~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1268 STWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred eeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence 99999987654444221 0 1122332333456778999999999999876554
No 212
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.70 E-value=6.4e-17 Score=137.12 Aligned_cols=250 Identities=12% Similarity=0.122 Sum_probs=194.9
Q ss_pred CCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEe
Q 040361 93 QLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSI 172 (413)
Q Consensus 93 ~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~ 172 (413)
.++.+|..++.|+.-|.+..++ |....+ ...+.....|.++.|.++.++++++- ...++|||- .|..++.+
T Consensus 136 ~ytrnGrhlllgGrKGHlAa~D--w~t~~L----~~Ei~v~Etv~Dv~~LHneq~~AVAQ--K~y~yvYD~-~GtElHCl 206 (545)
T KOG1272|consen 136 DYTRNGRHLLLGGRKGHLAAFD--WVTKKL----HFEINVMETVRDVTFLHNEQFFAVAQ--KKYVYVYDN-NGTELHCL 206 (545)
T ss_pred eecCCccEEEecCCccceeeee--ccccee----eeeeehhhhhhhhhhhcchHHHHhhh--hceEEEecC-CCcEEeeh
Confidence 4789999999999999988753 544332 33344456788889999988888754 789999995 67888888
Q ss_pred ecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecC
Q 040361 173 RQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVE 252 (413)
Q Consensus 173 ~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~ 252 (413)
+.| ..|..+.|-|-.=+|++++..|.++.-|+.+++ .+..+..-.+.+..++-+|-
T Consensus 207 k~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gk-----------------------lVa~~~t~~G~~~vm~qNP~ 262 (545)
T KOG1272|consen 207 KRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGK-----------------------LVASIRTGAGRTDVMKQNPY 262 (545)
T ss_pred hhc-CchhhhcccchhheeeecccCCceEEEeechhh-----------------------hhHHHHccCCccchhhcCCc
Confidence 865 568899999988889999999999999999998 56667777788888999998
Q ss_pred CCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCC-ceeeeeecCCceeEEE
Q 040361 253 LDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSING-KHLASSESNGRLNCLE 331 (413)
Q Consensus 253 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~i~~~~ 331 (413)
+..+-+|...|+|.+|.....+++..+..| .++|.++++.++|.++++.+.|..++|||++. ..+.......+...++
T Consensus 263 NaVih~GhsnGtVSlWSP~skePLvKiLcH-~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls 341 (545)
T KOG1272|consen 263 NAVIHLGHSNGTVSLWSPNSKEPLVKILCH-RGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLS 341 (545)
T ss_pred cceEEEcCCCceEEecCCCCcchHHHHHhc-CCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCccccc
Confidence 889999999999999999998888887776 45899999999999999999999999999994 3444444467788889
Q ss_pred ecCCCCEEEEeCCCCeEEEEE-CCCC--ceEEEecCC--CCcEEEEEEccCC
Q 040361 332 LSACGQFLVCGGDQGQIVVRS-MNSL--EVVRRYSGV--GKIITSLAVTPEE 378 (413)
Q Consensus 332 ~s~~~~~l~~~~~dg~i~v~d-~~~~--~~~~~~~~~--~~~v~~~~~~~~~ 378 (413)
+|..| +||.+ ....|.||. .-.+ ..-..+..| .++|..+.|.|-.
T Consensus 342 ~Sqkg-lLA~~-~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~E 391 (545)
T KOG1272|consen 342 LSQKG-LLALS-YGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYE 391 (545)
T ss_pred ccccc-ceeee-cCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHH
Confidence 98555 44444 444789994 2221 111222223 3589999999853
No 213
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=6.9e-15 Score=134.67 Aligned_cols=217 Identities=15% Similarity=0.140 Sum_probs=149.5
Q ss_pred ecceeEEEEecCCCCEEEEeecCC--CeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEE-EccCCC--cEEEEEec
Q 040361 132 LGSQCFTTMQTPSENFLITCGNWE--NSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILA-TGSYDT--TVMVWEVI 206 (413)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~g~~d--~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~s~dg--~i~iw~~~ 206 (413)
+...+....|+|+++.++.+...+ ..|++||+.+++... +..+.+...+.+|+|||+.|+ +.+.+| .|.+||+.
T Consensus 202 ~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~ 280 (433)
T PRK04922 202 SAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLG 280 (433)
T ss_pred CCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECC
Confidence 345678889999999999876433 479999998876543 333445556889999999775 445555 58888887
Q ss_pred cccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEee-CCCc--EEEEEccCCeEEEEEeCCC
Q 040361 207 RARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGS-KDGT--CVFHTLREGRYVRSLCHPS 283 (413)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~-~dg~--i~vwd~~~~~~~~~~~~~~ 283 (413)
++. ...+..+.......+|+|+++.++..+ .+|. |+++|+.+++..+ +...
T Consensus 281 ~g~------------------------~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~- 334 (433)
T PRK04922 281 SRQ------------------------LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQ- 334 (433)
T ss_pred CCC------------------------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecC-
Confidence 765 334445555556789999999887665 4454 6667776665433 2222
Q ss_pred CCceeeEEEccCCcEEEEECCCC---eEEEEEeCCceeeeeecCCceeEEEecCCCCEEEEeCCC---CeEEEEECCCCc
Q 040361 284 GSALSKLAASRHGRIVLYGDDDL---SLHLFSINGKHLASSESNGRLNCLELSACGQFLVCGGDQ---GQIVVRSMNSLE 357 (413)
Q Consensus 284 ~~~v~~~~~~~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~v~d~~~~~ 357 (413)
+......+|+|+|+.|+..+.++ .|.+||+.+................|+|||++++..+.+ +.|+++++. +.
T Consensus 335 g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~ 413 (433)
T PRK04922 335 GNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GR 413 (433)
T ss_pred CCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CC
Confidence 22345689999999988765432 699999985554444333345567999999988776543 468888885 44
Q ss_pred eEEEecCCCCcEEEEEEcc
Q 040361 358 VVRRYSGVGKIITSLAVTP 376 (413)
Q Consensus 358 ~~~~~~~~~~~v~~~~~~~ 376 (413)
....+..+.+.+...+|+|
T Consensus 414 ~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 414 VRQRLVSADGEVREPAWSP 432 (433)
T ss_pred ceEEcccCCCCCCCCccCC
Confidence 5566665666777788886
No 214
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=2.9e-14 Score=129.96 Aligned_cols=212 Identities=14% Similarity=0.116 Sum_probs=140.7
Q ss_pred eEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEcc---CCCcEEEEEeccccccccccccceeecCCCceeeecCc
Q 040361 157 SFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGS---YDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETP 233 (413)
Q Consensus 157 ~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s---~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (413)
.|.++|.+.... +.+..+...+...+|+|||+.|+..+ .+..|.+|++.+++
T Consensus 180 ~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~------------------------ 234 (429)
T PRK03629 180 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA------------------------ 234 (429)
T ss_pred eEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCC------------------------
Confidence 788888865443 44455677899999999999998654 24578999987765
Q ss_pred eeeeecCCCCeEEEEEecCCCEEEEe-eCCC--cEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCC-C--e
Q 040361 234 FHILCGHDDIITCLYVSVELDIVISG-SKDG--TCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDD-L--S 307 (413)
Q Consensus 234 ~~~~~~h~~~i~~~~~~~~~~~l~s~-~~dg--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~--~ 307 (413)
...+....+.+..++|+||++.|+.. +.+| .|++||+.+++..+.... ...+....|+|+|+.|+..+.+ + .
T Consensus 235 ~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~--~~~~~~~~wSPDG~~I~f~s~~~g~~~ 312 (429)
T PRK03629 235 VRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDG--RSNNTEPTWFPDSQNLAYTSDQAGRPQ 312 (429)
T ss_pred eEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCC--CCCcCceEECCCCCEEEEEeCCCCCce
Confidence 12222223334568999999987754 4455 588999988765543332 2356789999999988776653 4 4
Q ss_pred EEEEEeCCceeeee-ecCCceeEEEecCCCCEEEEeCCC---CeEEEEECCCCceEEEecCCCCcEEEEEEccCCeEEE-
Q 040361 308 LHLFSINGKHLASS-ESNGRLNCLELSACGQFLVCGGDQ---GQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFLA- 382 (413)
Q Consensus 308 i~i~d~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~d---g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~- 382 (413)
|+.+|+.+...... ..........|+|||++|+..+.+ ..|++||+.+++.. .+... .......|+|||++++
T Consensus 313 Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~ 390 (429)
T PRK03629 313 VYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIY 390 (429)
T ss_pred EEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEE
Confidence 55556665433332 233445678999999998876443 36889999887643 34321 2234678999987664
Q ss_pred EcCCCe---EEEEEecCC
Q 040361 383 GTKDGC---LLVYSIENR 397 (413)
Q Consensus 383 ~~~dg~---i~vw~~~~~ 397 (413)
++.++. +.+++++.+
T Consensus 391 ~s~~~~~~~l~~~~~~G~ 408 (429)
T PRK03629 391 SSSQGMGSVLNLVSTDGR 408 (429)
T ss_pred EEcCCCceEEEEEECCCC
Confidence 554543 677777543
No 215
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=3.5e-16 Score=133.50 Aligned_cols=290 Identities=17% Similarity=0.186 Sum_probs=206.5
Q ss_pred EeeccCCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCC-CCEEEEeecCCCeEEEEEcC-C
Q 040361 88 MWLTTQLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPS-ENFLITCGNWENSFQVIALN-D 165 (413)
Q Consensus 88 ~~~~~~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~g~~d~~i~i~~~~-~ 165 (413)
+..+..|...|..+++|+.|..+.+|+ |.... ..+.-.-+|...++...|.|. +..-+++.+.||.+++=.+. +
T Consensus 144 cVntV~FN~~Gd~l~SgSDD~~vv~Wd--W~~~~--~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t 219 (559)
T KOG1334|consen 144 CVNTVHFNQRGDVLASGSDDLQVVVWD--WVSGS--PKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILET 219 (559)
T ss_pred ccceeeecccCceeeccCccceEEeeh--hhccC--cccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccc
Confidence 345567899999999999999999975 44322 223333345667777777775 33334445569999987664 3
Q ss_pred CcEE--EEeecCCCeEEEEEECCC-CCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCC
Q 040361 166 GRVV--QSIRQHRDVVSCVAVTTD-GSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDD 242 (413)
Q Consensus 166 ~~~~--~~~~~h~~~v~~~~~~~~-~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 242 (413)
+.+. ..+..|.+.|..++.-|+ ...|.+++.|+.+.-.|++....... ...-..+..
T Consensus 220 ~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~--------------------~~cr~~~~~ 279 (559)
T KOG1334|consen 220 GYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEK--------------------FVCREADEK 279 (559)
T ss_pred cceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccce--------------------eeeeccCCc
Confidence 4333 334459999999999996 45689999999999999987762211 111222333
Q ss_pred ---CeEEEEEecCCC-EEEEeeCCCcEEEEEccCCeEE------EEEeC-----CCCCceeeEEEccCCcEEEEECCCCe
Q 040361 243 ---IITCLYVSVELD-IVISGSKDGTCVFHTLREGRYV------RSLCH-----PSGSALSKLAASRHGRIVLYGDDDLS 307 (413)
Q Consensus 243 ---~i~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~------~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~d~~ 307 (413)
....++..|... .+++++.|..+++||.+.-... ..+.. .....|++++++.++.-++++..|-.
T Consensus 280 ~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~ 359 (559)
T KOG1334|consen 280 ERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDED 359 (559)
T ss_pred cceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccc
Confidence 467888888554 8999999999999998753322 22221 22356899999998888888888889
Q ss_pred EEEEEeC---Cc----------eeee--eec--CCceeEEEe-cCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcE
Q 040361 308 LHLFSIN---GK----------HLAS--SES--NGRLNCLEL-SACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKII 369 (413)
Q Consensus 308 i~i~d~~---~~----------~~~~--~~~--~~~i~~~~~-s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v 369 (413)
|++|.-+ +. .+.. .+| ...|..+-| -|...|+++|++-|.|.||+-.+++.+.-+++....|
T Consensus 360 IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VV 439 (559)
T KOG1334|consen 360 IYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVV 439 (559)
T ss_pred eEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceE
Confidence 9999654 21 1111 122 234666664 5788999999999999999999999998888877789
Q ss_pred EEEEEccCCeEE-EEcCCCeEEEEEecCCcccc
Q 040361 370 TSLAVTPEECFL-AGTKDGCLLVYSIENRRTSL 401 (413)
Q Consensus 370 ~~~~~~~~~~~l-~~~~dg~i~vw~~~~~~~~~ 401 (413)
+|+.=+|---+| +++-|..|+||...+.+..+
T Consensus 440 NCLEpHP~~PvLAsSGid~DVKIWTP~~~er~~ 472 (559)
T KOG1334|consen 440 NCLEPHPHLPVLASSGIDHDVKIWTPLTAERAT 472 (559)
T ss_pred eccCCCCCCchhhccCCccceeeecCCcccccc
Confidence 999999986666 48899999999986555443
No 216
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=1.6e-14 Score=132.45 Aligned_cols=216 Identities=12% Similarity=0.078 Sum_probs=149.9
Q ss_pred ecceeEEEEecCCCCEEEEeecC--CCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEE-EccCCCc--EEEEEec
Q 040361 132 LGSQCFTTMQTPSENFLITCGNW--ENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILA-TGSYDTT--VMVWEVI 206 (413)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~g~~--d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~s~dg~--i~iw~~~ 206 (413)
+...+....|+|+|+.++.+... +..|++||+.+++.. .+..+.+.+...+|+|||+.|+ +.+.++. |.+||+.
T Consensus 200 ~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~ 278 (435)
T PRK05137 200 GSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLR 278 (435)
T ss_pred CCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECC
Confidence 35578889999999998887643 458999999887653 4455667788899999998875 5556665 6666776
Q ss_pred cccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeC-CC--cEEEEEccCCeEEEEEeCCC
Q 040361 207 RARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSK-DG--TCVFHTLREGRYVRSLCHPS 283 (413)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~-dg--~i~vwd~~~~~~~~~~~~~~ 283 (413)
++. ...+..+........|+||++.++..+. +| .|++||+..+... .+...
T Consensus 279 ~~~------------------------~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~- 332 (435)
T PRK05137 279 SGT------------------------TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFG- 332 (435)
T ss_pred CCc------------------------eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecC-
Confidence 554 3344555566677899999998876653 33 6888888665543 33322
Q ss_pred CCceeeEEEccCCcEEEEECCC---CeEEEEEeCCceeeeeecCCceeEEEecCCCCEEEEeCCC------CeEEEEECC
Q 040361 284 GSALSKLAASRHGRIVLYGDDD---LSLHLFSINGKHLASSESNGRLNCLELSACGQFLVCGGDQ------GQIVVRSMN 354 (413)
Q Consensus 284 ~~~v~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d------g~i~v~d~~ 354 (413)
...+....|+|+|+.|+....+ ..|.+||+.+...........+....|+|||++|+..+.+ ..++++|+.
T Consensus 333 ~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~ 412 (435)
T PRK05137 333 GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLT 412 (435)
T ss_pred CCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECC
Confidence 2345678899999998876543 3688889875544443333456788999999988765432 368888887
Q ss_pred CCceEEEecCCCCcEEEEEEcc
Q 040361 355 SLEVVRRYSGVGKIITSLAVTP 376 (413)
Q Consensus 355 ~~~~~~~~~~~~~~v~~~~~~~ 376 (413)
.+.. ..+. ..+.+...+|+|
T Consensus 413 g~~~-~~l~-~~~~~~~p~Wsp 432 (435)
T PRK05137 413 GRNE-REVP-TPGDASDPAWSP 432 (435)
T ss_pred CCce-EEcc-CCCCccCcccCC
Confidence 6544 4454 244566777876
No 217
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.69 E-value=8.1e-15 Score=121.98 Aligned_cols=243 Identities=12% Similarity=0.108 Sum_probs=173.1
Q ss_pred EEEecCCCCEEEEeec-CCCeEEEEEcCCCcEEEEe------ecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccc
Q 040361 138 TTMQTPSENFLITCGN-WENSFQVIALNDGRVVQSI------RQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARA 210 (413)
Q Consensus 138 ~~~~~~~~~~l~~~g~-~d~~i~i~~~~~~~~~~~~------~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~ 210 (413)
.++|.-+++.-+..+. .|..+..+.++.......+ ....+.|..++.. | ..|++|-.+|.+.+|....+..
T Consensus 60 ~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-d-g~Litc~~sG~l~~~~~k~~d~ 137 (412)
T KOG3881|consen 60 SLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-D-GTLITCVSSGNLQVRHDKSGDL 137 (412)
T ss_pred hheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-C-CEEEEEecCCcEEEEeccCCcc
Confidence 3344444443333233 4666777766655544332 2345666666653 3 3788889999999999986542
Q ss_pred cccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecC-CCEEEEeeCC--CcEEEEEccCCeEEEEEeCCCC---
Q 040361 211 PEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVE-LDIVISGSKD--GTCVFHTLREGRYVRSLCHPSG--- 284 (413)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~-~~~l~s~~~d--g~i~vwd~~~~~~~~~~~~~~~--- 284 (413)
... +...+..+ ..+..+.-++. ..++++|+.. ..+.+||+...+.+.+-+...+
T Consensus 138 hss-------------------~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L 197 (412)
T KOG3881|consen 138 HSS-------------------KLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRL 197 (412)
T ss_pred ccc-------------------cceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccc
Confidence 111 22233333 33444554443 3466679988 8899999998877765443221
Q ss_pred -----CceeeEEEccC--CcEEEEECCCCeEEEEEeCC--ceeeee-ecCCceeEEEecCCCCEEEEeCCCCeEEEEECC
Q 040361 285 -----SALSKLAASRH--GRIVLYGDDDLSLHLFSING--KHLASS-ESNGRLNCLELSACGQFLVCGGDQGQIVVRSMN 354 (413)
Q Consensus 285 -----~~v~~~~~~~~--~~~l~~~~~d~~i~i~d~~~--~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~ 354 (413)
..++++.|-+. ...+++++.-+++++||++. +.+..+ ....+++++...|+++++++|...|.+..||++
T Consensus 198 ~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r 277 (412)
T KOG3881|consen 198 GLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLR 277 (412)
T ss_pred cceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheeccc
Confidence 24577888887 78999999999999999983 233333 357889999999999999999999999999999
Q ss_pred CCceEEE-ecCCCCcEEEEEEccCCeEEE-EcCCCeEEEEEecCCccccc
Q 040361 355 SLEVVRR-YSGVGKIITSLAVTPEECFLA-GTKDGCLLVYSIENRRTSLP 402 (413)
Q Consensus 355 ~~~~~~~-~~~~~~~v~~~~~~~~~~~l~-~~~dg~i~vw~~~~~~~~~~ 402 (413)
.++.... +.+..+.|+++..+|...+++ ++-|..|+|+|+++.+....
T Consensus 278 ~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~k 327 (412)
T KOG3881|consen 278 GGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHK 327 (412)
T ss_pred CceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhh
Confidence 9998876 888999999999999988775 99999999999999655543
No 218
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.68 E-value=8e-14 Score=113.15 Aligned_cols=231 Identities=12% Similarity=0.241 Sum_probs=156.6
Q ss_pred EEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCe--EEEEEECCCCCEEE-EccCC------CcEEEEEecc
Q 040361 137 FTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDV--VSCVAVTTDGSILA-TGSYD------TTVMVWEVIR 207 (413)
Q Consensus 137 ~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~--v~~~~~~~~~~~l~-s~s~d------g~i~iw~~~~ 207 (413)
.++.|..|...+++ |. |.-.+||+.+--+.....+-+.+. +.-+-| -.++|+ +|+.+ ..|.|||=..
T Consensus 9 lsvs~NQD~ScFav-a~-~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWDD~k 84 (346)
T KOG2111|consen 9 LSVSFNQDHSCFAV-AT-DTGFRIYNCDPFKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWDDLK 84 (346)
T ss_pred eEEEEccCCceEEE-Ee-cCceEEEecCchhhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEeccc
Confidence 44666666666665 54 677999998753332222222222 222222 223443 34332 4699999322
Q ss_pred ccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEcc-CCeEEEEEeCCC-CC
Q 040361 208 ARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLR-EGRYVRSLCHPS-GS 285 (413)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~-~~ 285 (413)
.+ ++..+ ....+|.++.+.++ .+++. ..+.|++|... +-+.++.+.... ..
T Consensus 85 ~~-----------------------~i~el-~f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPk 137 (346)
T KOG2111|consen 85 ER-----------------------CIIEL-SFNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPK 137 (346)
T ss_pred Cc-----------------------EEEEE-EeccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCC
Confidence 22 34444 35678999999876 44444 36789999987 556666665322 22
Q ss_pred ceeeEEEccCCcEEEE-ECCCCeEEEEEeCCce----eeeeecCCceeEEEecCCCCEEEEeCCCCe-EEEEECCCCceE
Q 040361 286 ALSKLAASRHGRIVLY-GDDDLSLHLFSINGKH----LASSESNGRLNCLELSACGQFLVCGGDQGQ-IVVRSMNSLEVV 359 (413)
Q Consensus 286 ~v~~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~----~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-i~v~d~~~~~~~ 359 (413)
.+.+++-..+..+|+. |-.-|.|.+-|+.... .....|+..|.|++++-+|..+|+++..|+ |||||..+|+.+
T Consensus 138 GlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l 217 (346)
T KOG2111|consen 138 GLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLL 217 (346)
T ss_pred ceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEe
Confidence 3544444445556665 4456899999997333 344679999999999999999999999996 899999999999
Q ss_pred EEecCC--CCcEEEEEEccCCeEEE-EcCCCeEEEEEecCCc
Q 040361 360 RRYSGV--GKIITSLAVTPEECFLA-GTKDGCLLVYSIENRR 398 (413)
Q Consensus 360 ~~~~~~--~~~v~~~~~~~~~~~l~-~~~dg~i~vw~~~~~~ 398 (413)
.+++.. ...|.+++|+|++.+++ +++.|+|.++.++...
T Consensus 218 ~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 218 QELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred eeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 998742 35699999999988775 7888999999998743
No 219
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.68 E-value=7.8e-14 Score=123.38 Aligned_cols=303 Identities=10% Similarity=0.099 Sum_probs=181.9
Q ss_pred ecCCcEEEEecCceEEEEEeec-------cCCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEec
Q 040361 70 MLDSSIVLVNQGLTLSVKMWLT-------TQLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQT 142 (413)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~-------~~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (413)
..++.+.+++......+..+.. ..++|||++++.+++|+.+.+.+... ......+..+.....++++
T Consensus 13 ~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~------~~~v~~i~~G~~~~~i~~s 86 (369)
T PF02239_consen 13 RGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLAT------GKVVATIKVGGNPRGIAVS 86 (369)
T ss_dssp GGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTS------SSEEEEEE-SSEEEEEEE-
T ss_pred cCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCc------ccEEEEEecCCCcceEEEc
Confidence 4457777777655443333321 24799999999999999988854211 1244456667888999999
Q ss_pred CCCCEEEEeecCCCeEEEEEcCCCcEEEEeecC-------CCeEEEEEECCCCCEEEEccC-CCcEEEEEeccccccccc
Q 040361 143 PSENFLITCGNWENSFQVIALNDGRVVQSIRQH-------RDVVSCVAVTTDGSILATGSY-DTTVMVWEVIRARAPEKR 214 (413)
Q Consensus 143 ~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h-------~~~v~~~~~~~~~~~l~s~s~-dg~i~iw~~~~~~~~~~~ 214 (413)
++|++++++...++.+.++|.++.++++.+... ...+.++..+|....++..-. .+.|.+-|......
T Consensus 87 ~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~---- 162 (369)
T PF02239_consen 87 PDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN---- 162 (369)
T ss_dssp -TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC----
T ss_pred CCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc----
Confidence 999999998888999999999999999888642 346788888888875555544 47676666555431
Q ss_pred cccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEE-eeCCCcEEEEEccCCeEEEEEeCCCC---CceeeE
Q 040361 215 VRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVIS-GSKDGTCVFHTLREGRYVRSLCHPSG---SALSKL 290 (413)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s-~~~dg~i~vwd~~~~~~~~~~~~~~~---~~v~~~ 290 (413)
................|+|++++++. ...+..|-++|..+++.+..+..... .+...+
T Consensus 163 ------------------~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~ 224 (369)
T PF02239_consen 163 ------------------LKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF 224 (369)
T ss_dssp ------------------EEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE
T ss_pred ------------------cceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc
Confidence 12222334455677899999998765 45677899999999988776643211 122211
Q ss_pred EEccC----------CcEEEEECCCCeEEEEEeC-CceeeeeecCCceeEEEecCCCCEEEEe----CCCCeEEEEECCC
Q 040361 291 AASRH----------GRIVLYGDDDLSLHLFSIN-GKHLASSESNGRLNCLELSACGQFLVCG----GDQGQIVVRSMNS 355 (413)
Q Consensus 291 ~~~~~----------~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~----~~dg~i~v~d~~~ 355 (413)
.+|. +...++.-....+.+||.. -+.+......+.-.-+..+|+++++.+. ...+.|.++|.++
T Consensus 225 -php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~t 303 (369)
T PF02239_consen 225 -PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKT 303 (369)
T ss_dssp -EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCG
T ss_pred -cCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcC
Confidence 1222 1222111112234456655 3444444444444778889999999988 4568999999999
Q ss_pred CceEEEecC-CCCcEEEEEEccCCe--EEE-EcCCCeEEEEEecCCcccc
Q 040361 356 LEVVRRYSG-VGKIITSLAVTPEEC--FLA-GTKDGCLLVYSIENRRTSL 401 (413)
Q Consensus 356 ~~~~~~~~~-~~~~v~~~~~~~~~~--~l~-~~~dg~i~vw~~~~~~~~~ 401 (413)
.+.+.++.. ....+..+.|++||. +++ ...++.|.+||..+.+...
T Consensus 304 l~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~ 353 (369)
T PF02239_consen 304 LKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKK 353 (369)
T ss_dssp TEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEE
T ss_pred cceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEE
Confidence 988887752 233589999999986 445 4445589999999876553
No 220
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=2.7e-14 Score=130.80 Aligned_cols=213 Identities=17% Similarity=0.190 Sum_probs=144.0
Q ss_pred CeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCC---CcEEEEEeccccccccccccceeecCCCceeeecC
Q 040361 156 NSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYD---TTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVET 232 (413)
Q Consensus 156 ~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (413)
..|.+||.. +...+.+..+...+...+|+|||+.|+..+.+ ..|.+||+.++.
T Consensus 184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~----------------------- 239 (433)
T PRK04922 184 YALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQ----------------------- 239 (433)
T ss_pred EEEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCC-----------------------
Confidence 368899985 44445566677889999999999999887643 469999997765
Q ss_pred ceeeeecCCCCeEEEEEecCCCEEE-EeeCCC--cEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECC-CC--
Q 040361 233 PFHILCGHDDIITCLYVSVELDIVI-SGSKDG--TCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDD-DL-- 306 (413)
Q Consensus 233 ~~~~~~~h~~~i~~~~~~~~~~~l~-s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~-- 306 (413)
...+..+.+...+.+|+|+++.++ +.+.+| .|++||+.+++... +..+ .......+|+|+|+.|+..+. ++
T Consensus 240 -~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt~~-~~~~~~~~~spDG~~l~f~sd~~g~~ 316 (433)
T PRK04922 240 -RELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR-LTNH-FGIDTEPTWAPDGKSIYFTSDRGGRP 316 (433)
T ss_pred -EEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEE-CccC-CCCccceEECCCCCEEEEEECCCCCc
Confidence 222333444455789999998765 555555 59999998876543 3332 224467899999998877653 44
Q ss_pred eEEEEEeCCceeeee-ecCCceeEEEecCCCCEEEEeCCCC---eEEEEECCCCceEEEecCCCCcEEEEEEccCCeEEE
Q 040361 307 SLHLFSINGKHLASS-ESNGRLNCLELSACGQFLVCGGDQG---QIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFLA 382 (413)
Q Consensus 307 ~i~i~d~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg---~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 382 (413)
.|+++|+.+...... .........+|+|+|++++..+.++ .|.+||+.+++.. .+. +........|+|||++++
T Consensus 317 ~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~ 394 (433)
T PRK04922 317 QIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVL 394 (433)
T ss_pred eEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEE
Confidence 466777764433332 2233445789999999988765433 6999999887755 343 223455679999987554
Q ss_pred -EcC---CCeEEEEEecCC
Q 040361 383 -GTK---DGCLLVYSIENR 397 (413)
Q Consensus 383 -~~~---dg~i~vw~~~~~ 397 (413)
.+. .+.|.++++..+
T Consensus 395 ~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 395 YATREGGRGVLAAVSTDGR 413 (433)
T ss_pred EEEecCCceEEEEEECCCC
Confidence 332 345778887543
No 221
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.66 E-value=1.8e-14 Score=115.84 Aligned_cols=155 Identities=19% Similarity=0.222 Sum_probs=112.1
Q ss_pred EEEEEecCCCEEEEeeC----------CCcEEEEEcc-CCeEEEEEeCCCCCceeeEEEccCCcEEEEE--CCCCeEEEE
Q 040361 245 TCLYVSVELDIVISGSK----------DGTCVFHTLR-EGRYVRSLCHPSGSALSKLAASRHGRIVLYG--DDDLSLHLF 311 (413)
Q Consensus 245 ~~~~~~~~~~~l~s~~~----------dg~i~vwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~d~~i~i~ 311 (413)
..+.|+++|++|+.-.. -+...+|.++ .......+......+|.+++|+|+++.+++. ..+..+.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 35778999887664332 1234555553 2334455544444579999999999887554 456799999
Q ss_pred EeCCceeeeeecCCceeEEEecCCCCEEEEeCC---CCeEEEEECCCCceEEEecCCCCcEEEEEEccCCeEEE-E-c--
Q 040361 312 SINGKHLASSESNGRLNCLELSACGQFLVCGGD---QGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFLA-G-T-- 384 (413)
Q Consensus 312 d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~-~-- 384 (413)
|++++.+.... ...++.+.|+|+|++|++++. .|.|.+||.++.+.+.... |. .++.++|+|||++++ + +
T Consensus 89 d~~~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~ 165 (194)
T PF08662_consen 89 DVKGKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDGRYLATATTSP 165 (194)
T ss_pred cCcccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCCCEEEEEEecc
Confidence 99977766654 467789999999999999864 4679999999988887775 33 478999999998774 3 3
Q ss_pred ---CCCeEEEEEecCCcccccc
Q 040361 385 ---KDGCLLVYSIENRRTSLPR 403 (413)
Q Consensus 385 ---~dg~i~vw~~~~~~~~~~~ 403 (413)
.|+.++||++. |+.....
T Consensus 166 r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 166 RLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred ceeccccEEEEEec-CeEeEec
Confidence 38889999996 4444433
No 222
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.66 E-value=3.9e-14 Score=113.87 Aligned_cols=157 Identities=18% Similarity=0.259 Sum_probs=116.8
Q ss_pred eEEEEecCCCCEEEEeecC---------CCeEEEEEcC-CCcEEEEeec-CCCeEEEEEECCCCCEEEE--ccCCCcEEE
Q 040361 136 CFTTMQTPSENFLITCGNW---------ENSFQVIALN-DGRVVQSIRQ-HRDVVSCVAVTTDGSILAT--GSYDTTVMV 202 (413)
Q Consensus 136 ~~~~~~~~~~~~l~~~g~~---------d~~i~i~~~~-~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s--~s~dg~i~i 202 (413)
-..+.|++.|++|++.... -+...+|-++ .+.....+.. ..++|.+++|+|+|+.|++ |..++.|.+
T Consensus 8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 3567889999988876551 1345555552 2334445543 3457999999999998754 456789999
Q ss_pred EEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeC---CCcEEEEEccCCeEEEEE
Q 040361 203 WEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSK---DGTCVFHTLREGRYVRSL 279 (413)
Q Consensus 203 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~ 279 (413)
||++ .+ .+..+ +...+..+.|+|+|+++++++. .|.|.+||.++.+.+...
T Consensus 88 yd~~-~~-----------------------~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~ 141 (194)
T PF08662_consen 88 YDVK-GK-----------------------KIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTF 141 (194)
T ss_pred EcCc-cc-----------------------EeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecc
Confidence 9996 22 34444 3567789999999999998874 467999999988888777
Q ss_pred eCCCCCceeeEEEccCCcEEEEECC------CCeEEEEEeCCceeeee
Q 040361 280 CHPSGSALSKLAASRHGRIVLYGDD------DLSLHLFSINGKHLASS 321 (413)
Q Consensus 280 ~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~i~d~~~~~~~~~ 321 (413)
... .+..++|+|+|++++++.. |..++||+..|+.+...
T Consensus 142 ~~~---~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~~~ 186 (194)
T PF08662_consen 142 EHS---DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLLYKK 186 (194)
T ss_pred ccC---cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEeEec
Confidence 643 4789999999999998764 67899999998877653
No 223
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.65 E-value=3.5e-14 Score=134.11 Aligned_cols=227 Identities=15% Similarity=0.202 Sum_probs=165.3
Q ss_pred EEcCCCcEEEEeecCCCeEEEEEECCCC-CEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeec
Q 040361 161 IALNDGRVVQSIRQHRDVVSCVAVTTDG-SILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCG 239 (413)
Q Consensus 161 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (413)
|+. .|..+..+..|...|..++.++.. .+++|||.||+|++|+...-...... .....++..
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s----------------~rS~ltys~ 1096 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGS----------------ARSELTYSP 1096 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcce----------------eeeeEEEec
Confidence 443 578888999999999999988754 99999999999999998765422110 112334444
Q ss_pred CCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCC--e-----EEEEEeCCCCCceeeE-EEcc-CCc-EEEEECCCCeEE
Q 040361 240 HDDIITCLYVSVELDIVISGSKDGTCVFHTLREG--R-----YVRSLCHPSGSALSKL-AASR-HGR-IVLYGDDDLSLH 309 (413)
Q Consensus 240 h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~--~-----~~~~~~~~~~~~v~~~-~~~~-~~~-~l~~~~~d~~i~ 309 (413)
-...+.++...+.++.+|.++.||.|.+.++... . ..+.........+.++ ++.. .+. .++.+...+.|.
T Consensus 1097 ~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv 1176 (1431)
T KOG1240|consen 1097 EGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIV 1176 (1431)
T ss_pred cCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceE
Confidence 5678899999999999999999999999998752 1 1111222222233333 3332 233 788888889999
Q ss_pred EEEeCCcee----eeeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEec-CCCCcEEEEEEccC-C---eE
Q 040361 310 LFSINGKHL----ASSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYS-GVGKIITSLAVTPE-E---CF 380 (413)
Q Consensus 310 i~d~~~~~~----~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~v~~~~~~~~-~---~~ 380 (413)
.||++.... ......+.|++++.+|.+.+++.|+..|.+.+||++-+.++..+. .+..++..+..+|- + ..
T Consensus 1177 ~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~ 1256 (1431)
T KOG1240|consen 1177 SWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVS 1256 (1431)
T ss_pred EecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceE
Confidence 999984332 223456889999999999999999999999999999988887775 34577888887775 2 24
Q ss_pred EE-Ec-CCCeEEEEEecCCccccccc
Q 040361 381 LA-GT-KDGCLLVYSIENRRTSLPRN 404 (413)
Q Consensus 381 l~-~~-~dg~i~vw~~~~~~~~~~~~ 404 (413)
++ +. ..+.|.+|++.++......+
T Consensus 1257 vs~~~~~~nevs~wn~~~g~~~~vl~ 1282 (1431)
T KOG1240|consen 1257 VSAGSSSNNEVSTWNMETGLRQTVLW 1282 (1431)
T ss_pred EEecccCCCceeeeecccCcceEEEE
Confidence 43 44 67889999999986665444
No 224
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=2e-13 Score=112.68 Aligned_cols=272 Identities=15% Similarity=0.162 Sum_probs=178.9
Q ss_pred CCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCC----CcE-
Q 040361 94 LQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALND----GRV- 168 (413)
Q Consensus 94 ~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~----~~~- 168 (413)
+.+.-..++.+..|-++++++..... ...+.. ....++.+++|-|.+..-++.|+ .+-|.+|.... +..
T Consensus 106 WhqH~~~fava~nddvVriy~ksst~---pt~Lks--~sQrnvtclawRPlsaselavgC-r~gIciW~~s~tln~~r~~ 179 (445)
T KOG2139|consen 106 WHQHIIAFAVATNDDVVRIYDKSSTC---PTKLKS--VSQRNVTCLAWRPLSASELAVGC-RAGICIWSDSRTLNANRNI 179 (445)
T ss_pred echhhhhhhhhccCcEEEEeccCCCC---Cceecc--hhhcceeEEEeccCCcceeeeee-cceeEEEEcCccccccccc
Confidence 35544567888999999998543311 111111 12567889999999887888788 67799998642 111
Q ss_pred -------EE--EeecCCCeEEEEEECCCCCEEEEccC-CCcEEEEEeccccccccccccceeecCCCceeeecCceeeee
Q 040361 169 -------VQ--SIRQHRDVVSCVAVTTDGSILATGSY-DTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILC 238 (413)
Q Consensus 169 -------~~--~~~~h~~~v~~~~~~~~~~~l~s~s~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (413)
.+ ...+| ..|+.+.|.+||..+++++. |..|.|||.+++.. +....
T Consensus 180 ~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~-----------------------~pL~~ 235 (445)
T KOG2139|consen 180 RMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQK-----------------------IPLIP 235 (445)
T ss_pred ccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCc-----------------------ccccc
Confidence 11 12345 78999999999999999985 67899999998872 22222
Q ss_pred cCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeC--Cc
Q 040361 239 GHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSIN--GK 316 (413)
Q Consensus 239 ~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~ 316 (413)
.-.+.++-+.|+||+.++..++-|+..++|+....--........+ .|...+|+|+|.+|+..... .-++|.+. ++
T Consensus 236 ~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsg-rvqtacWspcGsfLLf~~sg-sp~lysl~f~~~ 313 (445)
T KOG2139|consen 236 KGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSG-RVQTACWSPCGSFLLFACSG-SPRLYSLTFDGE 313 (445)
T ss_pred cCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCC-ceeeeeecCCCCEEEEEEcC-CceEEEEeecCC
Confidence 3456788999999999999999999999996543322222222323 79999999999887655432 23344432 11
Q ss_pred ee-----------ee---------e----ecCCceeEEEecCCCCEEEEeCCCC--------eEEEEECCCCceEEEec-
Q 040361 317 HL-----------AS---------S----ESNGRLNCLELSACGQFLVCGGDQG--------QIVVRSMNSLEVVRRYS- 363 (413)
Q Consensus 317 ~~-----------~~---------~----~~~~~i~~~~~s~~~~~l~~~~~dg--------~i~v~d~~~~~~~~~~~- 363 (413)
.. .. . -..+.+.+++|.|.|.+|++.-..+ .|.+||.+..-.+.-..
T Consensus 314 ~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~c 393 (445)
T KOG2139|consen 314 DSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYC 393 (445)
T ss_pred CccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEec
Confidence 10 00 0 1246789999999999999875443 46778877543332221
Q ss_pred C--CCCcEEEEEEccC---CeEEE-EcCCCeEEEEEecCC
Q 040361 364 G--VGKIITSLAVTPE---ECFLA-GTKDGCLLVYSIENR 397 (413)
Q Consensus 364 ~--~~~~v~~~~~~~~---~~~l~-~~~dg~i~vw~~~~~ 397 (413)
+ .......+.|+|- +.+++ +-..|.+.-|.+.-.
T Consensus 394 g~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~f~ 433 (445)
T KOG2139|consen 394 GMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLTFQ 433 (445)
T ss_pred ccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeEEE
Confidence 1 1122455667663 67886 777888988887643
No 225
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=1.7e-13 Score=125.11 Aligned_cols=211 Identities=18% Similarity=0.225 Sum_probs=137.6
Q ss_pred CeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCC---CcEEEEEeccccccccccccceeecCCCceeeecC
Q 040361 156 NSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYD---TTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVET 232 (413)
Q Consensus 156 ~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (413)
..|.++|. ++.....+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++
T Consensus 176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~----------------------- 231 (427)
T PRK02889 176 YQLQISDA-DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGR----------------------- 231 (427)
T ss_pred cEEEEECC-CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCC-----------------------
Confidence 36777776 455555566678889999999999999877643 359999998775
Q ss_pred ceeeeecCCCCeEEEEEecCCCEEE-EeeCCCcEEEEEc--cCCeEEEEEeCCCCCceeeEEEccCCcEEEEECC-CCeE
Q 040361 233 PFHILCGHDDIITCLYVSVELDIVI-SGSKDGTCVFHTL--REGRYVRSLCHPSGSALSKLAASRHGRIVLYGDD-DLSL 308 (413)
Q Consensus 233 ~~~~~~~h~~~i~~~~~~~~~~~l~-s~~~dg~i~vwd~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i 308 (413)
...+....+.+.+.+|+||++.++ +.+.+|...+|.+ ..+. ...+..+ ........|+|||+.|+..+. ++..
T Consensus 232 -~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~-~~~~~~~~wSpDG~~l~f~s~~~g~~ 308 (427)
T PRK02889 232 -RRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQS-SGIDTEPFFSPDGRSIYFTSDRGGAP 308 (427)
T ss_pred -EEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCC-CCCCcCeEEcCCCCEEEEEecCCCCc
Confidence 222333445566889999998776 5677887666654 4443 4444332 234567889999998876553 4555
Q ss_pred EEEEe--CCceeeee-ecCCceeEEEecCCCCEEEEeCCCC---eEEEEECCCCceEEEecCCCCcEEEEEEccCCeEEE
Q 040361 309 HLFSI--NGKHLASS-ESNGRLNCLELSACGQFLVCGGDQG---QIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFLA 382 (413)
Q Consensus 309 ~i~d~--~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg---~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 382 (413)
.+|.+ .+...... .........+|+|||++|+..+.++ .|++||+.+++... +.. ........|+|||+.+.
T Consensus 309 ~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~-~~~~~~p~~spdg~~l~ 386 (427)
T PRK02889 309 QIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTD-TTRDESPSFAPNGRYIL 386 (427)
T ss_pred EEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccC-CCCccCceECCCCCEEE
Confidence 56654 44333222 2223344678999999998776554 69999998876543 332 23346789999987553
Q ss_pred -Ec-CCC--eEEEEEec
Q 040361 383 -GT-KDG--CLLVYSIE 395 (413)
Q Consensus 383 -~~-~dg--~i~vw~~~ 395 (413)
++ ..| .+.+.++.
T Consensus 387 ~~~~~~g~~~l~~~~~~ 403 (427)
T PRK02889 387 YATQQGGRSVLAAVSSD 403 (427)
T ss_pred EEEecCCCEEEEEEECC
Confidence 33 333 35555553
No 226
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=4.2e-15 Score=128.88 Aligned_cols=217 Identities=14% Similarity=0.110 Sum_probs=156.6
Q ss_pred eecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEe-ecCCCeEEEEEECC--CCCEEEEccCCCcEEEEEecc
Q 040361 131 ELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSI-RQHRDVVSCVAVTT--DGSILATGSYDTTVMVWEVIR 207 (413)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~-~~h~~~v~~~~~~~--~~~~l~s~s~dg~i~iw~~~~ 207 (413)
+|.+.|.++.|..+|..|+. |+.|-.+.|||....+++..+ .+|...|.++.|-| +.+.+++|..|..|+++|+..
T Consensus 48 GH~GCVN~LeWn~dG~lL~S-GSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~ 126 (758)
T KOG1310|consen 48 GHTGCVNCLEWNADGELLAS-GSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDS 126 (758)
T ss_pred cccceecceeecCCCCEEee-cCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEeccc
Confidence 34556667788888887666 777999999999888888777 57999999999998 567899999999999999986
Q ss_pred ccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCC-CEEEEeeCCCcEEEEEccCCeEEEE-------E
Q 040361 208 ARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVEL-DIVISGSKDGTCVFHTLREGRYVRS-------L 279 (413)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~-------~ 279 (413)
.+..... . -...+...+..|...|..++..|++ +.+.++++||+|+-+|++....... +
T Consensus 127 ~~~~~~d-----~--------~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l 193 (758)
T KOG1310|consen 127 SKEGGMD-----H--------GMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSIL 193 (758)
T ss_pred ccccccc-----c--------CccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHH
Confidence 4311000 0 0112456678899999999999988 7899999999999999986321110 0
Q ss_pred e--CCCCCceeeEEEccC-CcEEEEECCCCeEEEEEeCCce-------------------eeee--ec----C----C--
Q 040361 280 C--HPSGSALSKLAASRH-GRIVLYGDDDLSLHLFSINGKH-------------------LASS--ES----N----G-- 325 (413)
Q Consensus 280 ~--~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~-------------------~~~~--~~----~----~-- 325 (413)
. .+.-....++.++|. ..+|++|+.|-..++||.+... +..+ .| . .
T Consensus 194 ~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~ 273 (758)
T KOG1310|consen 194 VNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYI 273 (758)
T ss_pred HHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccce
Confidence 0 111134677889984 6789999999999999953100 0000 00 0 1
Q ss_pred -ceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEE
Q 040361 326 -RLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRR 361 (413)
Q Consensus 326 -~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~ 361 (413)
.++-++|+|+|.-|++.-..-.|+++|+..++....
T Consensus 274 ~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~ 310 (758)
T KOG1310|consen 274 TCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTP 310 (758)
T ss_pred eeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCcee
Confidence 245678999998888776667899999988765543
No 227
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.63 E-value=2.3e-14 Score=113.24 Aligned_cols=150 Identities=13% Similarity=0.144 Sum_probs=121.4
Q ss_pred CCCEEEEeecCCCeEEEEEcCCCc----------EEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEecccccccc
Q 040361 144 SENFLITCGNWENSFQVIALNDGR----------VVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEK 213 (413)
Q Consensus 144 ~~~~l~~~g~~d~~i~i~~~~~~~----------~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~ 213 (413)
....++++|+.+|.+.+||+.++. .......|..+|.++.|.+.-..=++|+.+..+..|++........
T Consensus 163 ~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq 242 (323)
T KOG0322|consen 163 GSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQ 242 (323)
T ss_pred cceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCccc
Confidence 345678889999999999999873 3334456999999999988766678889999999999876531100
Q ss_pred ccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEc
Q 040361 214 RVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAAS 293 (413)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~ 293 (413)
......-..-.|..+..-||++.+++++.|++|++|..++.+++..++.|. ..|++++|+
T Consensus 243 -------------------~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHs-agvn~vAfs 302 (323)
T KOG0322|consen 243 -------------------IRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHS-AGVNAVAFS 302 (323)
T ss_pred -------------------ccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhh-cceeEEEeC
Confidence 011112223457788899999999999999999999999999999999885 689999999
Q ss_pred cCCcEEEEECCCCeEEEEEe
Q 040361 294 RHGRIVLYGDDDLSLHLFSI 313 (413)
Q Consensus 294 ~~~~~l~~~~~d~~i~i~d~ 313 (413)
|+..++++++.|++|-+|++
T Consensus 303 pd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 303 PDCELMAAASKDARISLWKL 322 (323)
T ss_pred CCCchhhhccCCceEEeeec
Confidence 99999999999999999986
No 228
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=6.4e-14 Score=122.29 Aligned_cols=210 Identities=16% Similarity=0.181 Sum_probs=164.2
Q ss_pred ceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEecccc
Q 040361 130 FELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRAR 209 (413)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~ 209 (413)
+..+..+..++++...--|+++|+ ...|+-++++.|+.+..+....+.++++..++-..+|++|+.+|.|..||.+...
T Consensus 130 ~RIP~~GRDm~y~~~scDly~~gs-g~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ks 208 (703)
T KOG2321|consen 130 TRIPKFGRDMKYHKPSCDLYLVGS-GSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKS 208 (703)
T ss_pred eecCcCCccccccCCCccEEEeec-CcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhh
Confidence 344566777777766666666565 6789999999999999998888999999999998999999999999999998776
Q ss_pred ccccccccceeecCCCceeeecCceeeeecCC-----CCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCC
Q 040361 210 APEKRVRNMQIEAPRKDYVIVETPFHILCGHD-----DIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSG 284 (413)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-----~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 284 (413)
.. ..+.. ...+..|. ..|+++.|+.+|-.++.|+.+|.+.+||+++.+++..-.+...
T Consensus 209 rv----~~l~~-------------~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e 271 (703)
T KOG2321|consen 209 RV----GTLDA-------------ASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYE 271 (703)
T ss_pred hh----eeeec-------------ccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCc
Confidence 21 11111 11112233 3499999999999999999999999999999999887776666
Q ss_pred CceeeEEEccCC-cEEEEECCCCeEEEEEeC-CceeeeeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCc
Q 040361 285 SALSKLAASRHG-RIVLYGDDDLSLHLFSIN-GKHLASSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLE 357 (413)
Q Consensus 285 ~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~ 357 (413)
.+|..+.|.+.+ .--++......+++||-. |+..........++.+++-|++.+++++.+++.+..|=+...-
T Consensus 272 ~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LG 346 (703)
T KOG2321|consen 272 LPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTYYIPSLG 346 (703)
T ss_pred cceeeecccccCCCceEEecchHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeEEccccC
Confidence 789999997752 223344445689999988 6777777777779999999999999999999888877665543
No 229
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.63 E-value=8.9e-15 Score=126.53 Aligned_cols=137 Identities=16% Similarity=0.135 Sum_probs=113.0
Q ss_pred cceeEEEEecCCCCEEEEeecCCCeEEEEEcCC--------------CcEE--------------EEeecCCCeEEEEEE
Q 040361 133 GSQCFTTMQTPSENFLITCGNWENSFQVIALND--------------GRVV--------------QSIRQHRDVVSCVAV 184 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~--------------~~~~--------------~~~~~h~~~v~~~~~ 184 (413)
...|.++.|.|.++.++++...+|.+++||.+- +... ..+.--.+.|...+|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 477899999999998888888999999997521 1111 111123457889999
Q ss_pred CCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCc
Q 040361 185 TTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGT 264 (413)
Q Consensus 185 ~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~ 264 (413)
+|||++||+.|.||.++|+|+.+.+ .+..++..-+...|++|+|||+++++|++|-.
T Consensus 299 S~DG~~LA~VSqDGfLRvF~fdt~e-----------------------Llg~mkSYFGGLLCvcWSPDGKyIvtGGEDDL 355 (636)
T KOG2394|consen 299 SPDGKYLATVSQDGFLRIFDFDTQE-----------------------LLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDL 355 (636)
T ss_pred cCCCceEEEEecCceEEEeeccHHH-----------------------HHHHHHhhccceEEEEEcCCccEEEecCCcce
Confidence 9999999999999999999998876 45555667788999999999999999999999
Q ss_pred EEEEEccCCeEEEEEeCCCCCceeeEEEc
Q 040361 265 CVFHTLREGRYVRSLCHPSGSALSKLAAS 293 (413)
Q Consensus 265 i~vwd~~~~~~~~~~~~~~~~~v~~~~~~ 293 (413)
|.||.+..++.+..-..| .+.|..++|+
T Consensus 356 VtVwSf~erRVVARGqGH-kSWVs~VaFD 383 (636)
T KOG2394|consen 356 VTVWSFEERRVVARGQGH-KSWVSVVAFD 383 (636)
T ss_pred EEEEEeccceEEEecccc-ccceeeEeec
Confidence 999999999888877665 5788888888
No 230
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.62 E-value=2.5e-15 Score=136.32 Aligned_cols=271 Identities=17% Similarity=0.253 Sum_probs=187.7
Q ss_pred CCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEe
Q 040361 93 QLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSI 172 (413)
Q Consensus 93 ~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~ 172 (413)
.|-..|.++++|+.|..+++|+. .....+...-+|...+...+.+ ..+.+++++++|..|++|-+.++.++..+
T Consensus 197 ~fDrtg~~Iitgsdd~lvKiwS~-----et~~~lAs~rGhs~ditdlavs-~~n~~iaaaS~D~vIrvWrl~~~~pvsvL 270 (1113)
T KOG0644|consen 197 IFDRTGRYIITGSDDRLVKIWSM-----ETARCLASCRGHSGDITDLAVS-SNNTMIAAASNDKVIRVWRLPDGAPVSVL 270 (1113)
T ss_pred eeccccceEeecCccceeeeeec-----cchhhhccCCCCccccchhccc-hhhhhhhhcccCceEEEEecCCCchHHHH
Confidence 46788999999999999999751 1223344444555666666554 44556666888999999999999999999
Q ss_pred ecCCCeEEEEEECCCCCEEEEccCCCcEEEEEec-cccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEec
Q 040361 173 RQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVI-RARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSV 251 (413)
Q Consensus 173 ~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~ 251 (413)
.+|++.|++++|+|-. +.+.||++++||.+ ....... .+.. ......+.++.|..
T Consensus 271 rghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~p------------------rp~~--~~~~~~~~s~~~~~ 326 (1113)
T KOG0644|consen 271 RGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVP------------------RPLK--FTEKDLVDSILFEN 326 (1113)
T ss_pred hccccceeeeccCccc----cCCCCCceEeccccccccccCC------------------CCCC--cccccceeeeeccc
Confidence 9999999999999954 77899999999987 1110000 0000 11224566777888
Q ss_pred CCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccC-CcEEEEECCCCeEEEEEeCCc-eeee-eecCCcee
Q 040361 252 ELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRH-GRIVLYGDDDLSLHLFSINGK-HLAS-SESNGRLN 328 (413)
Q Consensus 252 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~-~~~~-~~~~~~i~ 328 (413)
.+..++|++.|+.-..|.+...... ...+.-+..+.+ ..+.+++-.+..+++|++... .... ..|...+.
T Consensus 327 ~~~~f~Tgs~d~ea~n~e~~~l~~~-------~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~y 399 (1113)
T KOG0644|consen 327 NGDRFLTGSRDGEARNHEFEQLAWR-------SNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVY 399 (1113)
T ss_pred cccccccccCCcccccchhhHhhhh-------ccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhccccccee
Confidence 8889999999998888875421110 000111111111 244555566778899998744 3332 46788899
Q ss_pred EEEecCCCC-EEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEccCCeEEEE-cCCCeEEEEEecCCccc
Q 040361 329 CLELSACGQ-FLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFLAG-TKDGCLLVYSIENRRTS 400 (413)
Q Consensus 329 ~~~~s~~~~-~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~dg~i~vw~~~~~~~~ 400 (413)
.+.++|-+. ...+++.||...|||+..|.+++.+......+..-+|++||.-++. ..-|.++|.....++.+
T Consensus 400 vLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~ 473 (1113)
T KOG0644|consen 400 VLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKSQ 473 (1113)
T ss_pred eeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCccc
Confidence 999999765 4567889999999999999888766533455666799999987764 45588888887665544
No 231
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.61 E-value=1.6e-13 Score=112.57 Aligned_cols=263 Identities=13% Similarity=0.133 Sum_probs=168.3
Q ss_pred cceeEEEEecCCCCEEEEeecCCCeEEEEEcC----CCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccc
Q 040361 133 GSQCFTTMQTPSENFLITCGNWENSFQVIALN----DGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRA 208 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~----~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~ 208 (413)
...|..+.+.+....|+ +|...|++.=+.+. .....+....|...|..+-|+....++++.+.|..+.---.+.+
T Consensus 68 P~~~~~~~y~~e~~~L~-vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~ 146 (404)
T KOG1409|consen 68 PSPCSAMEYVSESRRLY-VGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESG 146 (404)
T ss_pred CCCceEeeeeccceEEE-EEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccC
Confidence 55667676666655555 47778888888653 44556677789999999999998999999999988765444444
Q ss_pred cccccccc-----cceeec------CC-Cce------eeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEc
Q 040361 209 RAPEKRVR-----NMQIEA------PR-KDY------VIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTL 270 (413)
Q Consensus 209 ~~~~~~~~-----~~~~~~------~~-~~~------~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~ 270 (413)
........ .++... .. +.. ...-.++..+.+|.+.+++++|.+....+.+|..|..+.+||+
T Consensus 147 ~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdi 226 (404)
T KOG1409|consen 147 NRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDI 226 (404)
T ss_pred CcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEec
Confidence 32211000 000000 00 000 0013457788999999999999999999999999999999999
Q ss_pred cCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCceeeeee-----------c----------------
Q 040361 271 REGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKHLASSE-----------S---------------- 323 (413)
Q Consensus 271 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-----------~---------------- 323 (413)
.-++.+.-....+...|..+...+.-+.+.+++.||.|.+|+++.+....-. +
T Consensus 227 gg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~g 306 (404)
T KOG1409|consen 227 GGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLG 306 (404)
T ss_pred cCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhh
Confidence 7555443333233457888888888889999999999999999854433210 0
Q ss_pred --------CCceeEEEecCCCCEEEEeCCCCeEEEEECCC-------CceEEEecCCCCcEEEEEEccC-CeEEEEcCCC
Q 040361 324 --------NGRLNCLELSACGQFLVCGGDQGQIVVRSMNS-------LEVVRRYSGVGKIITSLAVTPE-ECFLAGTKDG 387 (413)
Q Consensus 324 --------~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~-------~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~dg 387 (413)
-+...+...+.+.....+-+..-.+|+.|.-. ..++..+..-...|+.+.+..+ |.+++++.|.
T Consensus 307 lr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlglLvTsG~~R 386 (404)
T KOG1409|consen 307 LRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDR 386 (404)
T ss_pred hhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhhhccceeecCCce
Confidence 01111111111211222222233455544321 1223333333346899988877 7888999999
Q ss_pred eEEEEEecC
Q 040361 388 CLLVYSIEN 396 (413)
Q Consensus 388 ~i~vw~~~~ 396 (413)
.|++||++.
T Consensus 387 vi~iwd~~~ 395 (404)
T KOG1409|consen 387 VIKIWDVRS 395 (404)
T ss_pred EEEEEechh
Confidence 999999975
No 232
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.61 E-value=4.9e-14 Score=114.85 Aligned_cols=187 Identities=15% Similarity=0.155 Sum_probs=133.5
Q ss_pred EEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEE-ccCCCcEEEEEeccccccccccc
Q 040361 138 TTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILAT-GSYDTTVMVWEVIRARAPEKRVR 216 (413)
Q Consensus 138 ~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s-~s~dg~i~iw~~~~~~~~~~~~~ 216 (413)
-+.|+|+|++++++. +-.+.|-|.++-+..+.+.. -+.|.-+.|..|..+++. ...|+.|.+|++...+
T Consensus 13 ~c~fSp~g~yiAs~~--~yrlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe------- 82 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLS--RYRLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE------- 82 (447)
T ss_pred ceeECCCCCeeeeee--eeEEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecce-------
Confidence 467899999998866 55888888877665544432 356777889888776654 4678899999998766
Q ss_pred cceeecCCCceeeecCceeeeecCCCCeEEEEEecCCC-EEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccC
Q 040361 217 NMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELD-IVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRH 295 (413)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 295 (413)
-...+.....++.+++|+|+|+ ++.+..-|-+|.+|.+.+...... ..+ ...+..++|+|+
T Consensus 83 ----------------w~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~p-K~~~kg~~f~~d 144 (447)
T KOG4497|consen 83 ----------------WYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHP-KTNVKGYAFHPD 144 (447)
T ss_pred ----------------eEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-ccc-ccCceeEEECCC
Confidence 3455666778899999999996 555667789999999987665432 222 235678899999
Q ss_pred CcEEEEECCC------------------------------------CeEEEEEeC-CceeeeeecCCceeEEEecCCCCE
Q 040361 296 GRIVLYGDDD------------------------------------LSLHLFSIN-GKHLASSESNGRLNCLELSACGQF 338 (413)
Q Consensus 296 ~~~l~~~~~d------------------------------------~~i~i~d~~-~~~~~~~~~~~~i~~~~~s~~~~~ 338 (413)
|++.+..+.. ..+.+||.- ..++......-.+..++|+|.+++
T Consensus 145 g~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qf 224 (447)
T KOG4497|consen 145 GQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQF 224 (447)
T ss_pred CceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccce
Confidence 9887766532 123344432 111112233356888999999999
Q ss_pred EEEeCCCCeEEEEE
Q 040361 339 LVCGGDQGQIVVRS 352 (413)
Q Consensus 339 l~~~~~dg~i~v~d 352 (413)
|++|+.|+.+||.+
T Consensus 225 lavGsyD~~lrvln 238 (447)
T KOG4497|consen 225 LAVGSYDQMLRVLN 238 (447)
T ss_pred EEeeccchhhhhhc
Confidence 99999999998854
No 233
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=9.4e-14 Score=114.65 Aligned_cols=234 Identities=16% Similarity=0.191 Sum_probs=153.9
Q ss_pred eeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeec-CCCeEEEEEECCC-CCEEEEccCCCcEEEEEeccccccc
Q 040361 135 QCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQ-HRDVVSCVAVTTD-GSILATGSYDTTVMVWEVIRARAPE 212 (413)
Q Consensus 135 ~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~-h~~~v~~~~~~~~-~~~l~s~s~dg~i~iw~~~~~~~~~ 212 (413)
...-++|++.-..+++ +..|..|++|+-.. +....++. ....|+|++|-|. +..|+.|.. +-|.+|..+......
T Consensus 100 dlr~~aWhqH~~~fav-a~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~ 176 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAV-ATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNAN 176 (445)
T ss_pred ceeeEeechhhhhhhh-hccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccc
Confidence 3445666664444444 55699999999766 55555543 5678999999995 455666666 459999886544322
Q ss_pred cccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeC-CCcEEEEEccCCeEEEEEeCCCCCceeeEE
Q 040361 213 KRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSK-DGTCVFHTLREGRYVRSLCHPSGSALSKLA 291 (413)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~ 291 (413)
+....+... ...+....+| .+|+++.|.+||..+++++. |..|.+||..++..+.-.... ...+.-+.
T Consensus 177 r~~~~~s~~---------~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~g-lgg~slLk 245 (445)
T KOG2139|consen 177 RNIRMMSTH---------HLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKG-LGGFSLLK 245 (445)
T ss_pred ccccccccc---------chhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccC-CCceeeEE
Confidence 221111110 0023333455 68999999999999998875 668999999998876655322 34688899
Q ss_pred EccCCcEEEEECCCCeEEEEEeCCcee-e-eeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCC----Cc--------
Q 040361 292 ASRHGRIVLYGDDDLSLHLFSINGKHL-A-SSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNS----LE-------- 357 (413)
Q Consensus 292 ~~~~~~~l~~~~~d~~i~i~d~~~~~~-~-~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~----~~-------- 357 (413)
|+||+.+++++.-|+..++|+....-- . -.-..+.|....|+|+|++|+.... |.-++|.+.. ..
T Consensus 246 wSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k 324 (445)
T KOG2139|consen 246 WSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIK 324 (445)
T ss_pred EcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccce
Confidence 999999999999999999997652211 1 1223458999999999987765533 2233443321 00
Q ss_pred ---eEEEec-----C----CCCcEEEEEEccCCeEEEE
Q 040361 358 ---VVRRYS-----G----VGKIITSLAVTPEECFLAG 383 (413)
Q Consensus 358 ---~~~~~~-----~----~~~~v~~~~~~~~~~~l~~ 383 (413)
++..+. . ..+.+.+++|.|.|.+++.
T Consensus 325 ~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav 362 (445)
T KOG2139|consen 325 RVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAV 362 (445)
T ss_pred eeeeeccchhhhhhcCcccccCccceeeECCCCCEEEE
Confidence 111111 1 1467899999999987763
No 234
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.61 E-value=6.7e-14 Score=116.62 Aligned_cols=213 Identities=13% Similarity=0.145 Sum_probs=162.4
Q ss_pred ceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCC--CeEEEEEcCCCcEEEEeec--
Q 040361 99 NFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWE--NSFQVIALNDGRVVQSIRQ-- 174 (413)
Q Consensus 99 ~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d--~~i~i~~~~~~~~~~~~~~-- 174 (413)
..|.+|-.+|.+.+|........ ......+..+.....+.-.+...+++++|+.. ..+.|||++..+.+..-+.
T Consensus 116 g~Litc~~sG~l~~~~~k~~d~h--ss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvp 193 (412)
T KOG3881|consen 116 GTLITCVSSGNLQVRHDKSGDLH--SSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVP 193 (412)
T ss_pred CEEEEEecCCcEEEEeccCCccc--cccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCC
Confidence 45677778888888654322110 11112233355666677778888999989878 7899999988755443321
Q ss_pred -------CCCeEEEEEECCC--CCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeE
Q 040361 175 -------HRDVVSCVAVTTD--GSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIIT 245 (413)
Q Consensus 175 -------h~~~v~~~~~~~~--~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 245 (413)
-.-.++.+.|-+. ...|++++.-+.+++||.+.++ .|+..+.-.+.+++
T Consensus 194 nD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qR----------------------RPV~~fd~~E~~is 251 (412)
T KOG3881|consen 194 NDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQR----------------------RPVAQFDFLENPIS 251 (412)
T ss_pred CccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccC----------------------cceeEeccccCcce
Confidence 1135678889886 7899999999999999999777 37777887889999
Q ss_pred EEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCcee-eeeecC
Q 040361 246 CLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKHL-ASSESN 324 (413)
Q Consensus 246 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~ 324 (413)
++...|+++.+++|..-|.+..+|++.++............++++..+|...++++++-|..|+|+|++...+ ......
T Consensus 252 ~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvK 331 (412)
T KOG3881|consen 252 STGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVK 331 (412)
T ss_pred eeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhh
Confidence 9999999999999999999999999999988874333356899999999999999999999999999997443 334456
Q ss_pred CceeEEEecCC
Q 040361 325 GRLNCLELSAC 335 (413)
Q Consensus 325 ~~i~~~~~s~~ 335 (413)
..++++.+.++
T Consensus 332 s~lt~il~~~~ 342 (412)
T KOG3881|consen 332 SRLTFILLRDD 342 (412)
T ss_pred ccccEEEecCC
Confidence 67777777654
No 235
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=5.5e-13 Score=122.58 Aligned_cols=217 Identities=16% Similarity=0.137 Sum_probs=143.9
Q ss_pred ecceeEEEEecCCCCEEEEeecCCC--eEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEE-EccCCC--cEEEEEec
Q 040361 132 LGSQCFTTMQTPSENFLITCGNWEN--SFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILA-TGSYDT--TVMVWEVI 206 (413)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~g~~d~--~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~s~dg--~i~iw~~~ 206 (413)
....+....|+|+|+.++.+...++ .|.+|++.+++... +....+.+...+|+|||+.|+ +.+.+| .|.+||+.
T Consensus 197 ~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~ 275 (430)
T PRK00178 197 SREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLA 275 (430)
T ss_pred CCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECC
Confidence 3456788899999999988765443 69999998886543 333344556789999999887 444555 57777887
Q ss_pred cccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeC-CC--cEEEEEccCCeEEEEEeCCC
Q 040361 207 RARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSK-DG--TCVFHTLREGRYVRSLCHPS 283 (413)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~-dg--~i~vwd~~~~~~~~~~~~~~ 283 (413)
++. ...+..+........|+|+++.++..+. +| .|+++|+.+++..+.. ..
T Consensus 276 ~~~------------------------~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt-~~- 329 (430)
T PRK00178 276 SRQ------------------------LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT-FV- 329 (430)
T ss_pred CCC------------------------eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cC-
Confidence 664 2334445555667889999997765543 33 5777788777643322 21
Q ss_pred CCceeeEEEccCCcEEEEECCC-C--eEEEEEeCCceeeeeecCCceeEEEecCCCCEEEEeCCC---CeEEEEECCCCc
Q 040361 284 GSALSKLAASRHGRIVLYGDDD-L--SLHLFSINGKHLASSESNGRLNCLELSACGQFLVCGGDQ---GQIVVRSMNSLE 357 (413)
Q Consensus 284 ~~~v~~~~~~~~~~~l~~~~~d-~--~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~v~d~~~~~ 357 (413)
+.......|+|+++.++....+ + .|.+||+.+................|+|||++++..+.+ ..++++++. +.
T Consensus 330 ~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~ 408 (430)
T PRK00178 330 GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GR 408 (430)
T ss_pred CCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CC
Confidence 2233457899999998876543 2 588889885544433322233456899999998876543 357777775 44
Q ss_pred eEEEecCCCCcEEEEEEcc
Q 040361 358 VVRRYSGVGKIITSLAVTP 376 (413)
Q Consensus 358 ~~~~~~~~~~~v~~~~~~~ 376 (413)
....+..+.+.+...+|+|
T Consensus 409 ~~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 409 VRLPLPTAQGEVREPSWSP 427 (430)
T ss_pred ceEECcCCCCCcCCCccCC
Confidence 4445655556677777876
No 236
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.60 E-value=7.1e-12 Score=111.02 Aligned_cols=191 Identities=16% Similarity=0.121 Sum_probs=131.6
Q ss_pred CCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCC
Q 040361 145 ENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPR 224 (413)
Q Consensus 145 ~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 224 (413)
++.++++-..++.|.+.|..+.+.+..+......-..+.|+|||+++++++.||.|.++|+.+.+
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~--------------- 69 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGK--------------- 69 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSS---------------
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCccc---------------
Confidence 34555556668999999999999999998765555567899999999999999999999999887
Q ss_pred CceeeecCceeeeecCCCCeEEEEEecCCCEEEEee-CCCcEEEEEccCCeEEEEEeCC------CCCceeeEEEccCCc
Q 040361 225 KDYVIVETPFHILCGHDDIITCLYVSVELDIVISGS-KDGTCVFHTLREGRYVRSLCHP------SGSALSKLAASRHGR 297 (413)
Q Consensus 225 ~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~------~~~~v~~~~~~~~~~ 297 (413)
.+..+..- .....+++++||++++++. .++.+.++|.++.+.++.+... ....+..+..++...
T Consensus 70 --------~v~~i~~G-~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~ 140 (369)
T PF02239_consen 70 --------VVATIKVG-GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRP 140 (369)
T ss_dssp --------EEEEEE-S-SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSS
T ss_pred --------EEEEEecC-CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCC
Confidence 45555543 3457899999999888665 6899999999999999887532 124567788888777
Q ss_pred EEE-EECCCCeEEEEEeCC-cee--eeeecCCceeEEEecCCCCEEEEe-CCCCeEEEEECCCCceE
Q 040361 298 IVL-YGDDDLSLHLFSING-KHL--ASSESNGRLNCLELSACGQFLVCG-GDQGQIVVRSMNSLEVV 359 (413)
Q Consensus 298 ~l~-~~~~d~~i~i~d~~~-~~~--~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~v~d~~~~~~~ 359 (413)
.++ +.-..+.|.+.|... +.+ .............|+|+++|++++ ..++.|-++|..+++.+
T Consensus 141 ~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v 207 (369)
T PF02239_consen 141 EFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLV 207 (369)
T ss_dssp EEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEE
T ss_pred EEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEE
Confidence 554 445558888888763 222 234556677889999999987664 45667778887765444
No 237
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.59 E-value=6.7e-13 Score=121.90 Aligned_cols=214 Identities=15% Similarity=0.107 Sum_probs=143.1
Q ss_pred cceeEEEEecCCCCEEEEeecCC--CeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEE-ccCCC--cEEEEEecc
Q 040361 133 GSQCFTTMQTPSENFLITCGNWE--NSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILAT-GSYDT--TVMVWEVIR 207 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~g~~d--~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s-~s~dg--~i~iw~~~~ 207 (413)
...+....|+|+|+.++.+...+ ..|++||+.+++... +..+.+.+.+++|+||++.|+. .+.++ .|.+|++.+
T Consensus 189 ~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~ 267 (417)
T TIGR02800 189 REPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDG 267 (417)
T ss_pred CCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCC
Confidence 44577888999999998876533 479999998886543 3345566778999999987764 44444 578888776
Q ss_pred ccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeC-CC--cEEEEEccCCeEEEEEeCCCC
Q 040361 208 ARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSK-DG--TCVFHTLREGRYVRSLCHPSG 284 (413)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~-dg--~i~vwd~~~~~~~~~~~~~~~ 284 (413)
+. ...+..+........|+|+++.|+..+. ++ .|.++|+.+++.. .+... .
T Consensus 268 ~~------------------------~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~-~ 321 (417)
T TIGR02800 268 KQ------------------------LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFR-G 321 (417)
T ss_pred CC------------------------EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecC-C
Confidence 54 2333344444556789999998876554 33 5788888776643 33322 3
Q ss_pred CceeeEEEccCCcEEEEECCCC---eEEEEEeCCceeeeeecCCceeEEEecCCCCEEEEeCCCC---eEEEEECCCCce
Q 040361 285 SALSKLAASRHGRIVLYGDDDL---SLHLFSINGKHLASSESNGRLNCLELSACGQFLVCGGDQG---QIVVRSMNSLEV 358 (413)
Q Consensus 285 ~~v~~~~~~~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~i~v~d~~~~~~ 358 (413)
.......|+|++++++.++.++ .|.+||+.+................|+|+|++|+..+.++ .+++.+. +++.
T Consensus 322 ~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g~~ 400 (417)
T TIGR02800 322 GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTGLDESPSFAPNGRMILYATTRGGRGVLGLVST-DGRF 400 (417)
T ss_pred CCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCCCCCCceECCCCCEEEEEEeCCCcEEEEEEEC-CCce
Confidence 3567789999999998887765 7889998864444333233345668999999888776654 4555554 3455
Q ss_pred EEEecCCCCcEEEEEE
Q 040361 359 VRRYSGVGKIITSLAV 374 (413)
Q Consensus 359 ~~~~~~~~~~v~~~~~ 374 (413)
...+..+.+.+..+.|
T Consensus 401 ~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 401 RARLPLGNGDVREPAW 416 (417)
T ss_pred eeECCCCCCCcCCCCC
Confidence 5555544445555444
No 238
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.59 E-value=2.3e-11 Score=107.95 Aligned_cols=254 Identities=15% Similarity=0.167 Sum_probs=163.2
Q ss_pred ceeEEEEecCCCCEEEEeec---CCCeEEEEEcCCC--cE--EEEeecCCCeEEEEEECCCCCEEEEcc-CCCcEEEEEe
Q 040361 134 SQCFTTMQTPSENFLITCGN---WENSFQVIALNDG--RV--VQSIRQHRDVVSCVAVTTDGSILATGS-YDTTVMVWEV 205 (413)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~g~---~d~~i~i~~~~~~--~~--~~~~~~h~~~v~~~~~~~~~~~l~s~s-~dg~i~iw~~ 205 (413)
.....+.++|++++|.++.. .++.|..|.+... ++ +............++++|++++|+++. .+|.|.++++
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l 116 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL 116 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence 33445667899998888766 4679999988653 33 333333445567899999999999886 4899999999
Q ss_pred ccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeC-CCcEEEEEccCCe--E--EEEEe
Q 040361 206 IRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSK-DGTCVFHTLREGR--Y--VRSLC 280 (413)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~--~--~~~~~ 280 (413)
................. ..............++.++|+++++++... ...|.+|++.... . ...+.
T Consensus 117 ~~~g~l~~~~~~~~~~g---------~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~ 187 (345)
T PF10282_consen 117 DDDGSLGEVVQTVRHEG---------SGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIK 187 (345)
T ss_dssp CTTSEEEEEEEEEESEE---------EESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEE
T ss_pred cCCcccceeeeecccCC---------CCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccc
Confidence 87431111100000000 000000012244678999999998877643 4479999987654 3 33455
Q ss_pred CCCCCceeeEEEccCCcEEEEE-CCCCeEEEEEeC--Cceeee------ee----cCCceeEEEecCCCCEEEEeC-CCC
Q 040361 281 HPSGSALSKLAASRHGRIVLYG-DDDLSLHLFSIN--GKHLAS------SE----SNGRLNCLELSACGQFLVCGG-DQG 346 (413)
Q Consensus 281 ~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~i~d~~--~~~~~~------~~----~~~~i~~~~~s~~~~~l~~~~-~dg 346 (413)
.+.+...+.++|+|+++++++. ..++.|.+|++. ...+.. .. .......++++|||++|+++. ..+
T Consensus 188 ~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~ 267 (345)
T PF10282_consen 188 VPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSN 267 (345)
T ss_dssp CSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTT
T ss_pred cccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCC
Confidence 5667789999999999887655 557889999987 322221 11 112578899999999988765 567
Q ss_pred eEEEEECC--CC--ceEEEecCCCCcEEEEEEccCCeEE-E-EcCCCeEEEEEecC
Q 040361 347 QIVVRSMN--SL--EVVRRYSGVGKIITSLAVTPEECFL-A-GTKDGCLLVYSIEN 396 (413)
Q Consensus 347 ~i~v~d~~--~~--~~~~~~~~~~~~v~~~~~~~~~~~l-~-~~~dg~i~vw~~~~ 396 (413)
.|.+|++. ++ +.+..+.......+.++++|+|++| + .-.++.|.+|+++.
T Consensus 268 sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 268 SISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp EEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred EEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence 89999993 23 3344454445568999999998755 3 55788999998854
No 239
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=7.9e-13 Score=121.11 Aligned_cols=216 Identities=14% Similarity=0.088 Sum_probs=140.2
Q ss_pred cceeEEEEecCCCCEEEEeecCCC--eEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEE-ccCCCc--EEEEEecc
Q 040361 133 GSQCFTTMQTPSENFLITCGNWEN--SFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILAT-GSYDTT--VMVWEVIR 207 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~g~~d~--~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s-~s~dg~--i~iw~~~~ 207 (413)
...+....|+|+|+.++.+...++ .|++||+.+++... +....+.....+|+|||+.|+. .+.+|. |.++|+.+
T Consensus 217 ~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~t 295 (448)
T PRK04792 217 PEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIAT 295 (448)
T ss_pred CCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCC
Confidence 445667899999999998765444 68889998876533 2222333457899999998865 456665 66667665
Q ss_pred ccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeC-CC--cEEEEEccCCeEEEEEeCCCC
Q 040361 208 ARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSK-DG--TCVFHTLREGRYVRSLCHPSG 284 (413)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~-dg--~i~vwd~~~~~~~~~~~~~~~ 284 (413)
++ ...+..+.......+|+||++.++..+. ++ .|.++|+.+++..+.. .. +
T Consensus 296 g~------------------------~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~-g 349 (448)
T PRK04792 296 KA------------------------LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT-FE-G 349 (448)
T ss_pred CC------------------------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe-cC-C
Confidence 54 3334445555677899999997765543 44 4666777777654322 11 2
Q ss_pred CceeeEEEccCCcEEEEECC-CC--eEEEEEeCCceeeeeecCCceeEEEecCCCCEEEEeCCC-C--eEEEEECCCCce
Q 040361 285 SALSKLAASRHGRIVLYGDD-DL--SLHLFSINGKHLASSESNGRLNCLELSACGQFLVCGGDQ-G--QIVVRSMNSLEV 358 (413)
Q Consensus 285 ~~v~~~~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g--~i~v~d~~~~~~ 358 (413)
......+|+|+|+.++..+. ++ .|.++|+.+................|+|+|++|+..+.+ | .+++++. ++..
T Consensus 350 ~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~ 428 (448)
T PRK04792 350 EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRF 428 (448)
T ss_pred CCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCCCCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCc
Confidence 23345789999998877654 33 466677775444332222222345899999988775543 3 4777786 5666
Q ss_pred EEEecCCCCcEEEEEEcc
Q 040361 359 VRRYSGVGKIITSLAVTP 376 (413)
Q Consensus 359 ~~~~~~~~~~v~~~~~~~ 376 (413)
...+..+.+.+...+|+|
T Consensus 429 ~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 429 KARLPAGQGEVKSPAWSP 446 (448)
T ss_pred eEECcCCCCCcCCCccCC
Confidence 666766666778888887
No 240
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.57 E-value=2.1e-12 Score=118.65 Aligned_cols=211 Identities=18% Similarity=0.188 Sum_probs=140.7
Q ss_pred CeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCC---CcEEEEEeccccccccccccceeecCCCceeeecC
Q 040361 156 NSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYD---TTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVET 232 (413)
Q Consensus 156 ~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (413)
..|.++|... ...+.+..+...+...+|+|||++|+.++.+ ..|.+||+.++.
T Consensus 170 ~~l~~~d~~g-~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~----------------------- 225 (417)
T TIGR02800 170 YELQVADYDG-ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQ----------------------- 225 (417)
T ss_pred ceEEEEcCCC-CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCC-----------------------
Confidence 3688888753 3345555677788899999999999887643 479999998765
Q ss_pred ceeeeecCCCCeEEEEEecCCCEEE-EeeCCC--cEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECC-CC--
Q 040361 233 PFHILCGHDDIITCLYVSVELDIVI-SGSKDG--TCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDD-DL-- 306 (413)
Q Consensus 233 ~~~~~~~h~~~i~~~~~~~~~~~l~-s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~-- 306 (413)
...+..+.+.+.+++|+|+++.|+ +.+.++ .|++||+.++.... +... ........|+|+++.|+..+. ++
T Consensus 226 -~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~-l~~~-~~~~~~~~~s~dg~~l~~~s~~~g~~ 302 (417)
T TIGR02800 226 -REKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTR-LTNG-PGIDTEPSWSPDGKSIAFTSDRGGSP 302 (417)
T ss_pred -EEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEE-CCCC-CCCCCCEEECCCCCEEEEEECCCCCc
Confidence 223334555667789999998765 445444 58889998775443 3222 223456789999998876543 33
Q ss_pred eEEEEEeCCceeee-eecCCceeEEEecCCCCEEEEeCCCC---eEEEEECCCCceEEEecCCCCcEEEEEEccCCeEE-
Q 040361 307 SLHLFSINGKHLAS-SESNGRLNCLELSACGQFLVCGGDQG---QIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFL- 381 (413)
Q Consensus 307 ~i~i~d~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg---~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l- 381 (413)
.|+++|+.+..... ...........|+|+|++++.++.++ .|.+||+.++... .+... .......|+||++.+
T Consensus 303 ~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~ 380 (417)
T TIGR02800 303 QIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMIL 380 (417)
T ss_pred eEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEE
Confidence 67888887544333 23445667889999999999887765 7899999875543 33322 234556899998655
Q ss_pred EEcCCC---eEEEEEec
Q 040361 382 AGTKDG---CLLVYSIE 395 (413)
Q Consensus 382 ~~~~dg---~i~vw~~~ 395 (413)
..+.++ .+++.+..
T Consensus 381 ~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 381 YATTRGGRGVLGLVSTD 397 (417)
T ss_pred EEEeCCCcEEEEEEECC
Confidence 333332 35555543
No 241
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=7.1e-14 Score=119.66 Aligned_cols=247 Identities=16% Similarity=0.171 Sum_probs=180.7
Q ss_pred cceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEee-cCCCeEEEEEECC--CCCEEEEccCCCcEEEEEecccc
Q 040361 133 GSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIR-QHRDVVSCVAVTT--DGSILATGSYDTTVMVWEVIRAR 209 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~-~h~~~v~~~~~~~--~~~~l~s~s~dg~i~iw~~~~~~ 209 (413)
.+.+-.+.|...|..++. |+.|..|.+||+..++....+. +|...|..-.|-| +.+.+++++.||.+++=.+....
T Consensus 142 ~GcVntV~FN~~Gd~l~S-gSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~ 220 (559)
T KOG1334|consen 142 KGCVNTVHFNQRGDVLAS-GSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETG 220 (559)
T ss_pred CCccceeeecccCceeec-cCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeecccc
Confidence 555666777777777666 6669999999999888776664 6999998888988 45779999999999998775544
Q ss_pred ccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCC-CEEEEeeCCCcEEEEEccCCeEEEEEe---CCCC-
Q 040361 210 APEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVEL-DIVISGSKDGTCVFHTLREGRYVRSLC---HPSG- 284 (413)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~---~~~~- 284 (413)
... ....+..|.++|..++.-|+. ..|.+++.|+.+.-.|++.+.....+. ....
T Consensus 221 ~~e--------------------~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~ 280 (559)
T KOG1334|consen 221 YVE--------------------NTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKE 280 (559)
T ss_pred cee--------------------cceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCcc
Confidence 211 244567899999999998855 468899999999999999876544432 1111
Q ss_pred -CceeeEEEccC-CcEEEEECCCCeEEEEEeCCce-------eee-------eecCCceeEEEecCCCCEEEEeCCCCeE
Q 040361 285 -SALSKLAASRH-GRIVLYGDDDLSLHLFSINGKH-------LAS-------SESNGRLNCLELSACGQFLVCGGDQGQI 348 (413)
Q Consensus 285 -~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~-------~~~-------~~~~~~i~~~~~s~~~~~l~~~~~dg~i 348 (413)
.....++..|. ...+++++.|..+++||.+.-. +.. ....-.|++++|+.++.-|+++-.|-.|
T Consensus 281 ~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~I 360 (559)
T KOG1334|consen 281 RVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDI 360 (559)
T ss_pred ceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccce
Confidence 35678888885 4589999999999999986211 111 1234569999999888877788788889
Q ss_pred EEEECC--CC----------ceEEE-ecCCCC--cEEEEEEc-cCCeEE-EEcCCCeEEEEEecCCccc
Q 040361 349 VVRSMN--SL----------EVVRR-YSGVGK--IITSLAVT-PEECFL-AGTKDGCLLVYSIENRRTS 400 (413)
Q Consensus 349 ~v~d~~--~~----------~~~~~-~~~~~~--~v~~~~~~-~~~~~l-~~~~dg~i~vw~~~~~~~~ 400 (413)
+++.-. .| ..+.. +++|.. .|..+-|- |...|+ +|+.-|.|.||+-.+++..
T Consensus 361 YLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii 429 (559)
T KOG1334|consen 361 YLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEII 429 (559)
T ss_pred EEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHH
Confidence 999543 22 23333 778854 47777654 555555 6889999999998876543
No 242
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.57 E-value=2.8e-13 Score=126.30 Aligned_cols=198 Identities=17% Similarity=0.176 Sum_probs=146.8
Q ss_pred CCCCCCceeeecCCCCccccCCCcCCCcccCCC-CcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEE
Q 040361 93 QLQSGGNFTFSGSQDPFFGVGADILSPRNVGSP-LAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQS 171 (413)
Q Consensus 93 ~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~ 171 (413)
.+....++++.+..++.+.+++ +....+... .......-..+ .+.-.......+++|+.-+.|.+|+....+....
T Consensus 94 ~l~~e~k~i~l~~~~ns~~i~d--~~~~~~~~~i~~~er~~l~~~-~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~ 170 (967)
T KOG0974|consen 94 KLFEENKKIALVTSRNSLLIRD--SKNSSVLSKIQSDERCTLYSS-LIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIR 170 (967)
T ss_pred chhhhcceEEEEEcCceEEEEe--cccCceehhcCCCceEEEEeE-EEEeccCcEEEEEeccccccEEEEeccccCCcce
Confidence 4555666777777777766653 221111111 11110001111 1222344566677788899999999864333336
Q ss_pred eecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEec
Q 040361 172 IRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSV 251 (413)
Q Consensus 172 ~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~ 251 (413)
+.+|.+.|..+.|+-||+++++.|.|.++++|++++.+. ......+|...|..++|.|
T Consensus 171 l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~----------------------~~~~~fgHsaRvw~~~~~~ 228 (967)
T KOG0974|consen 171 LKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREV----------------------LGCTGFGHSARVWACCFLP 228 (967)
T ss_pred ecccCCceEEEEEccCCcEEEEEecCcceeeeecccccc----------------------cCcccccccceeEEEEecc
Confidence 889999999999999999999999999999999999872 2235679999999999999
Q ss_pred CCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCcee
Q 040361 252 ELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKHL 318 (413)
Q Consensus 252 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 318 (413)
+ .++++++|.+.++|+. ++..+..+..|.+..+..++..++...+++++.|+.+++|++.+...
T Consensus 229 n--~i~t~gedctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~ 292 (967)
T KOG0974|consen 229 N--RIITVGEDCTCRVWGV-NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGL 292 (967)
T ss_pred c--eeEEeccceEEEEEec-ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcccc
Confidence 8 8999999999999976 45555577777788899999999999999999999999999975443
No 243
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.57 E-value=9.3e-12 Score=101.35 Aligned_cols=224 Identities=15% Similarity=0.230 Sum_probs=149.8
Q ss_pred CCEEEEeecCC------CeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccc
Q 040361 145 ENFLITCGNWE------NSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNM 218 (413)
Q Consensus 145 ~~~l~~~g~~d------~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~ 218 (413)
.++++.+|+.+ +.|.|||=...+++.++. ...+|.++.+.++ .|++.- .+.|.+|.+.+.-.
T Consensus 58 ~N~laLVGGg~~pky~pNkviIWDD~k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k-------- 125 (346)
T KOG2111|consen 58 SNYLALVGGGSRPKYPPNKVIIWDDLKERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPK-------- 125 (346)
T ss_pred hceEEEecCCCCCCCCCceEEEEecccCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChh--------
Confidence 45666666534 479999966677777775 6789999999865 565554 47899999874321
Q ss_pred eeecCCCceeeecCceeeeecC--CCCeEEEEEecCCCEEEE-eeCCCcEEEEEccCCeE--EEEEeCCCCCceeeEEEc
Q 040361 219 QIEAPRKDYVIVETPFHILCGH--DDIITCLYVSVELDIVIS-GSKDGTCVFHTLREGRY--VRSLCHPSGSALSKLAAS 293 (413)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~h--~~~i~~~~~~~~~~~l~s-~~~dg~i~vwd~~~~~~--~~~~~~~~~~~v~~~~~~ 293 (413)
.+..+..- ...+.+++-..+..+|+. |-.-|.|.+-|+...+. ...+..| .+.|.+++.+
T Consensus 126 --------------~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH-~s~Iacv~Ln 190 (346)
T KOG2111|consen 126 --------------LLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAH-DSDIACVALN 190 (346)
T ss_pred --------------heeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcc-cCceeEEEEc
Confidence 12222211 122333332233334443 44568999999976655 2444544 6789999999
Q ss_pred cCCcEEEEECCCCe-EEEEEeC-Cceeeee---ecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceE---------
Q 040361 294 RHGRIVLYGDDDLS-LHLFSIN-GKHLASS---ESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVV--------- 359 (413)
Q Consensus 294 ~~~~~l~~~~~d~~-i~i~d~~-~~~~~~~---~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~--------- 359 (413)
-+|..+|+++..|+ |++||.. +..+... .....|.+++|||+..+|+++++.|+++||.++....-
T Consensus 191 ~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~ 270 (346)
T KOG2111|consen 191 LQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTENTEDESSSLSF 270 (346)
T ss_pred CCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCCCCccccccccc
Confidence 99999999999986 8999998 4444433 34568999999999999999999999999988652211
Q ss_pred ---------------EEecCCCCcEEEEEEccC-CeEEEEcCCCeEEEEEec
Q 040361 360 ---------------RRYSGVGKIITSLAVTPE-ECFLAGTKDGCLLVYSIE 395 (413)
Q Consensus 360 ---------------~~~~~~~~~v~~~~~~~~-~~~l~~~~dg~i~vw~~~ 395 (413)
..+.-..++..-++|-.+ ..+++.+.||.-+-+.+.
T Consensus 271 ~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~f~ 322 (346)
T KOG2111|consen 271 KRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYYKFKFD 322 (346)
T ss_pred cccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEEEEEec
Confidence 111122344555667666 556677777776554443
No 244
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.56 E-value=2e-12 Score=106.25 Aligned_cols=262 Identities=12% Similarity=0.195 Sum_probs=173.6
Q ss_pred ceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCc-----EEEEeecCC------------CeEEEEEECCCC--CEEEEc
Q 040361 134 SQCFTTMQTPSENFLITCGNWENSFQVIALNDGR-----VVQSIRQHR------------DVVSCVAVTTDG--SILATG 194 (413)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~-----~~~~~~~h~------------~~v~~~~~~~~~--~~l~s~ 194 (413)
..+.++.|...|++|++ |..+|.|-++.-+... ....++.|. ..|..+.|.+++ ..++..
T Consensus 26 diis~vef~~~Ge~Lat-GdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 26 DIISAVEFDHYGERLAT-GDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred cceeeEEeecccceEee-cCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 34556777888888776 8889999998653322 233444453 468889998864 456777
Q ss_pred cCCCcEEEEEeccccccccc-----------cccceee-cCCCceeeecCceeee-ecCCCCeEEEEEecCCCEEEEeeC
Q 040361 195 SYDTTVMVWEVIRARAPEKR-----------VRNMQIE-APRKDYVIVETPFHIL-CGHDDIITCLYVSVELDIVISGSK 261 (413)
Q Consensus 195 s~dg~i~iw~~~~~~~~~~~-----------~~~~~~~-~~~~~~~~~~~~~~~~-~~h~~~i~~~~~~~~~~~l~s~~~ 261 (413)
+.|.+|++|.+......... +..+... ....+..+...+.+.+ .+|..-|.++.++.|...++++.
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD- 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD- 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-
Confidence 88999999999765532210 0000000 0111222223333333 46888999999999999998875
Q ss_pred CCcEEEEEccCCeE---EEEEeCCC----CCceeeEEEccC-CcEEEEECCCCeEEEEEeCCcee-----eee-------
Q 040361 262 DGTCVFHTLREGRY---VRSLCHPS----GSALSKLAASRH-GRIVLYGDDDLSLHLFSINGKHL-----ASS------- 321 (413)
Q Consensus 262 dg~i~vwd~~~~~~---~~~~~~~~----~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~-----~~~------- 321 (413)
|=.|.+|+++--.. +..++.+. ...|++..|+|. .+.++.++..|+|++-|++...+ ...
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~ 263 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS 263 (433)
T ss_pred ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence 78899999863322 22222221 135788889994 67888899999999999983221 111
Q ss_pred ------ecCCceeEEEecCCCCEEEEeCCCCeEEEEECC-CCceEEEecCCC------------CcE---EEEEEccCCe
Q 040361 322 ------ESNGRLNCLELSACGQFLVCGGDQGQIVVRSMN-SLEVVRRYSGVG------------KII---TSLAVTPEEC 379 (413)
Q Consensus 322 ------~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~-~~~~~~~~~~~~------------~~v---~~~~~~~~~~ 379 (413)
..-..|..+.|+++|+|+++-+. -+|++||+. ..+++.+++.|. +.| ..++|+.++.
T Consensus 264 ~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~ 342 (433)
T KOG1354|consen 264 SRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDS 342 (433)
T ss_pred chhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcc
Confidence 11135788999999999998754 489999994 567777776653 122 3467887754
Q ss_pred -EEEEcCCCeEEEEEecCCc
Q 040361 380 -FLAGTKDGCLLVYSIENRR 398 (413)
Q Consensus 380 -~l~~~~dg~i~vw~~~~~~ 398 (413)
.++|+....++++++..+.
T Consensus 343 ~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 343 YVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred eEecccccceEEEecCCCCc
Confidence 5579999999999976553
No 245
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=1.3e-11 Score=113.53 Aligned_cols=212 Identities=19% Similarity=0.212 Sum_probs=136.8
Q ss_pred eEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCC---CcEEEEEeccccccccccccceeecCCCceeeecCc
Q 040361 157 SFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYD---TTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETP 233 (413)
Q Consensus 157 ~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (413)
.|.++|.+.+. ...+..+...+....|+|||+.|+..+.+ ..|.+|++.++.
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~------------------------ 234 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGR------------------------ 234 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCC------------------------
Confidence 47777776444 45555677889999999999999876543 358888987765
Q ss_pred eeeeecCCCCeEEEEEecCCCEEE-EeeCCC--cEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECC-CC--e
Q 040361 234 FHILCGHDDIITCLYVSVELDIVI-SGSKDG--TCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDD-DL--S 307 (413)
Q Consensus 234 ~~~~~~h~~~i~~~~~~~~~~~l~-s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~ 307 (413)
...+....+.+....|+|+++.++ +.+.+| .|++||+.++.... +... ........|+|+|+.++..+. ++ .
T Consensus 235 ~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt~~-~~~~~~~~~spDg~~i~f~s~~~g~~~ 312 (430)
T PRK00178 235 REQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR-VTNH-PAIDTEPFWGKDGRTLYFTSDRGGKPQ 312 (430)
T ss_pred EEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-cccC-CCCcCCeEECCCCCEEEEEECCCCCce
Confidence 222223334455689999999776 455555 58888998876543 3322 234566789999988776543 33 5
Q ss_pred EEEEEeCCceeeeee-cCCceeEEEecCCCCEEEEeCCC-C--eEEEEECCCCceEEEecCCCCcEEEEEEccCCeEEE-
Q 040361 308 LHLFSINGKHLASSE-SNGRLNCLELSACGQFLVCGGDQ-G--QIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFLA- 382 (413)
Q Consensus 308 i~i~d~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~d-g--~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~- 382 (413)
|+++|+.+....... .........|+|+|++++..+.+ + .|.+||+.+++.. .+.. ........|+|||+.+.
T Consensus 313 iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~-~~~~~~p~~spdg~~i~~ 390 (430)
T PRK00178 313 IYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTD-TSLDESPSVAPNGTMLIY 390 (430)
T ss_pred EEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-EccC-CCCCCCceECCCCCEEEE
Confidence 777787644433322 22233457899999998876543 3 5888999887643 3332 22223568999987664
Q ss_pred -EcCC--CeEEEEEecCC
Q 040361 383 -GTKD--GCLLVYSIENR 397 (413)
Q Consensus 383 -~~~d--g~i~vw~~~~~ 397 (413)
...+ ..|.++++..+
T Consensus 391 ~~~~~g~~~l~~~~~~g~ 408 (430)
T PRK00178 391 ATRQQGRGVLMLVSINGR 408 (430)
T ss_pred EEecCCceEEEEEECCCC
Confidence 3233 34677777543
No 246
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=1.7e-11 Score=111.53 Aligned_cols=218 Identities=12% Similarity=0.061 Sum_probs=133.5
Q ss_pred CeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEE---EEccCCCc--EEEEEeccccccccccccceeecCCCceeee
Q 040361 156 NSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSIL---ATGSYDTT--VMVWEVIRARAPEKRVRNMQIEAPRKDYVIV 230 (413)
Q Consensus 156 ~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l---~s~s~dg~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (413)
..|.+.|.+.+.. +.+......+..-+|+|||+.+ ++...+|. |.+.++.+++
T Consensus 165 ~~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~--------------------- 222 (428)
T PRK01029 165 GELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPA--------------------- 222 (428)
T ss_pred ceEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCC---------------------
Confidence 3677777755443 3454455666788999999752 34444444 6666776554
Q ss_pred cCceeeeecCCCCeEEEEEecCCCEEEEeeC-CC----cEEEEEccCC--eEEEEEeCCCCCceeeEEEccCCcEEEEEC
Q 040361 231 ETPFHILCGHDDIITCLYVSVELDIVISGSK-DG----TCVFHTLREG--RYVRSLCHPSGSALSKLAASRHGRIVLYGD 303 (413)
Q Consensus 231 ~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~-dg----~i~vwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 303 (413)
...+....+.....+|+|||+.|+..+. +| .+..|++..+ .....+...........+|+|||+.|+..+
T Consensus 223 ---~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s 299 (428)
T PRK01029 223 ---GKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVS 299 (428)
T ss_pred ---ceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEE
Confidence 1222233444556899999988775442 23 3445777653 122233222122346789999999777654
Q ss_pred -CCCe--EEEEEeC--Cceeee-eecCCceeEEEecCCCCEEEEeCCC---CeEEEEECCCCceEEEecCCCCcEEEEEE
Q 040361 304 -DDLS--LHLFSIN--GKHLAS-SESNGRLNCLELSACGQFLVCGGDQ---GQIVVRSMNSLEVVRRYSGVGKIITSLAV 374 (413)
Q Consensus 304 -~d~~--i~i~d~~--~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~v~d~~~~~~~~~~~~~~~~v~~~~~ 374 (413)
.++. |+++++. +..... ......+....|+|||+.|+..+.+ ..|++||+.+++... +......+....|
T Consensus 300 ~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~w 378 (428)
T PRK01029 300 NKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSW 378 (428)
T ss_pred CCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEE
Confidence 4554 4444553 222222 2233566788999999988866443 479999999887643 4333345678999
Q ss_pred ccCCeEEE--Ec--CCCeEEEEEecCCcc
Q 040361 375 TPEECFLA--GT--KDGCLLVYSIENRRT 399 (413)
Q Consensus 375 ~~~~~~l~--~~--~dg~i~vw~~~~~~~ 399 (413)
+|||+.++ +. ....|++|++.+++.
T Consensus 379 SpDG~~L~f~~~~~g~~~L~~vdl~~g~~ 407 (428)
T PRK01029 379 AIDSLHLVYSAGNSNESELYLISLITKKT 407 (428)
T ss_pred CCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 99986543 32 345788899887653
No 247
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.50 E-value=2.6e-10 Score=101.24 Aligned_cols=261 Identities=15% Similarity=0.160 Sum_probs=160.2
Q ss_pred CCCCCCceeeecCCC----CccccCCCcCCCc-ccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCC-C
Q 040361 93 QLQSGGNFTFSGSQD----PFFGVGADILSPR-NVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALND-G 166 (413)
Q Consensus 93 ~~s~~~~~l~~~~~d----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~-~ 166 (413)
.++|++++|++.... +.+..+. +... ..-..+............+..++++++++++...+|.|.++++.. |
T Consensus 43 ~~~~~~~~LY~~~e~~~~~g~v~~~~--i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g 120 (345)
T PF10282_consen 43 AVSPDGRRLYVVNEGSGDSGGVSSYR--IDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDG 120 (345)
T ss_dssp EE-TTSSEEEEEETTSSTTTEEEEEE--EETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTS
T ss_pred EEEeCCCEEEEEEccccCCCCEEEEE--ECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCc
Confidence 358889998887664 3444432 2221 000111111112444456888999999999988899999999976 4
Q ss_pred cEEEE---ee----------cCCCeEEEEEECCCCCEEEEccC-CCcEEEEEeccccccccccccceeecCCCceeeecC
Q 040361 167 RVVQS---IR----------QHRDVVSCVAVTTDGSILATGSY-DTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVET 232 (413)
Q Consensus 167 ~~~~~---~~----------~h~~~v~~~~~~~~~~~l~s~s~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (413)
..... +. .-.....++.|+||++++++... ...|.+|+++.......
T Consensus 121 ~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~------------------- 181 (345)
T PF10282_consen 121 SLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLT------------------- 181 (345)
T ss_dssp EEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEE-------------------
T ss_pred ccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEE-------------------
Confidence 44332 21 12355789999999998887532 34799999976541110
Q ss_pred ceeee-ecCCCCeEEEEEecCCCEEEEe-eCCCcEEEEEcc--CCeE--EEEEeCC----C-CCceeeEEEccCCcEEEE
Q 040361 233 PFHIL-CGHDDIITCLYVSVELDIVISG-SKDGTCVFHTLR--EGRY--VRSLCHP----S-GSALSKLAASRHGRIVLY 301 (413)
Q Consensus 233 ~~~~~-~~h~~~i~~~~~~~~~~~l~s~-~~dg~i~vwd~~--~~~~--~~~~~~~----~-~~~v~~~~~~~~~~~l~~ 301 (413)
....+ ......-..++|+|+++++... -.++.|.++++. ++.. +..+... . ......++++|+|++|++
T Consensus 182 ~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyv 261 (345)
T PF10282_consen 182 PVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYV 261 (345)
T ss_dssp EEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEE
T ss_pred EeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEE
Confidence 01111 1334557899999999977554 457789999988 4433 2222211 1 125778999999999887
Q ss_pred EC-CCCeEEEEEeC--Cceeee---ee-cCCceeEEEecCCCCEEEEeC-CCCeEEEEEC--CCCceEEEec-CCCCcEE
Q 040361 302 GD-DDLSLHLFSIN--GKHLAS---SE-SNGRLNCLELSACGQFLVCGG-DQGQIVVRSM--NSLEVVRRYS-GVGKIIT 370 (413)
Q Consensus 302 ~~-~d~~i~i~d~~--~~~~~~---~~-~~~~i~~~~~s~~~~~l~~~~-~dg~i~v~d~--~~~~~~~~~~-~~~~~v~ 370 (413)
+. .++.|.+|+++ +..+.. .. .......++++|+|++|+++. .++.|.+|++ .+|.+...-. ..-....
T Consensus 262 snr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ 341 (345)
T PF10282_consen 262 SNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPV 341 (345)
T ss_dssp EECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEE
T ss_pred EeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCE
Confidence 65 46789999994 223322 22 244589999999999998876 5678999876 4666543321 1234466
Q ss_pred EEEE
Q 040361 371 SLAV 374 (413)
Q Consensus 371 ~~~~ 374 (413)
|+.|
T Consensus 342 ci~f 345 (345)
T PF10282_consen 342 CIVF 345 (345)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 6665
No 248
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=2.1e-11 Score=110.83 Aligned_cols=221 Identities=11% Similarity=-0.058 Sum_probs=137.4
Q ss_pred ceeEEEEecCCCCE--EEEeecCCC--eEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccC-CC----cEEEEE
Q 040361 134 SQCFTTMQTPSENF--LITCGNWEN--SFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSY-DT----TVMVWE 204 (413)
Q Consensus 134 ~~~~~~~~~~~~~~--l~~~g~~d~--~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~-dg----~i~iw~ 204 (413)
....+-.|+|+|+. ++.....+| .|++.++.+++.... ....+.....+|+|||+.|+..+. +| .+..|+
T Consensus 185 ~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~ 263 (428)
T PRK01029 185 SLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFS 263 (428)
T ss_pred CCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecCCCCccceEECCCCCEEEEEECCCCCcceeEEEee
Confidence 34566789999986 333454444 688889887764433 334445567899999998886543 23 334466
Q ss_pred eccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEee-CCCcEEEE--EccC-CeEEEEEe
Q 040361 205 VIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGS-KDGTCVFH--TLRE-GRYVRSLC 280 (413)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~-~dg~i~vw--d~~~-~~~~~~~~ 280 (413)
+..+... ........+.......+|+|||+.|+..+ .+|...+| ++.. +.....+.
T Consensus 264 ~~~g~~g--------------------~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt 323 (428)
T PRK01029 264 LETGAIG--------------------KPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLT 323 (428)
T ss_pred cccCCCC--------------------cceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEec
Confidence 5543100 01222222233446789999999777554 56655555 4432 23333343
Q ss_pred CCCCCceeeEEEccCCcEEEEECCC---CeEEEEEeCCceeeeee-cCCceeEEEecCCCCEEEEeCC---CCeEEEEEC
Q 040361 281 HPSGSALSKLAASRHGRIVLYGDDD---LSLHLFSINGKHLASSE-SNGRLNCLELSACGQFLVCGGD---QGQIVVRSM 353 (413)
Q Consensus 281 ~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~---dg~i~v~d~ 353 (413)
.. ...+....|+|+|+.|+....+ ..|++||+.+....... ....+....|+|||++|+.... ...|+++|+
T Consensus 324 ~~-~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl 402 (428)
T PRK01029 324 KK-YRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISL 402 (428)
T ss_pred cC-CCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEEC
Confidence 32 2356778999999988876543 47999999855544432 3345678999999998875432 357889999
Q ss_pred CCCceEEEecCCCCcEEEEEEccC
Q 040361 354 NSLEVVRRYSGVGKIITSLAVTPE 377 (413)
Q Consensus 354 ~~~~~~~~~~~~~~~v~~~~~~~~ 377 (413)
..++..... ...+.+...+|+|-
T Consensus 403 ~~g~~~~Lt-~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 403 ITKKTRKIV-IGSGEKRFPSWGAF 425 (428)
T ss_pred CCCCEEEee-cCCCcccCceecCC
Confidence 877654433 34455677788874
No 249
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=3.8e-11 Score=110.13 Aligned_cols=211 Identities=13% Similarity=0.145 Sum_probs=132.1
Q ss_pred eEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccC-CC--cEEEEEeccccccccccccceeecCCCceeeecCc
Q 040361 157 SFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSY-DT--TVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETP 233 (413)
Q Consensus 157 ~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~-dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (413)
.|.++|..... .+.+..+...+....|+|||+.|+..+. ++ .|.+||+.+++
T Consensus 199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~------------------------ 253 (448)
T PRK04792 199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQV------------------------ 253 (448)
T ss_pred EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCC------------------------
Confidence 66777765443 3455557778899999999999887654 33 57888887665
Q ss_pred eeeeecCCCCeEEEEEecCCCEEE-EeeCCCc--EEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECC-CC--e
Q 040361 234 FHILCGHDDIITCLYVSVELDIVI-SGSKDGT--CVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDD-DL--S 307 (413)
Q Consensus 234 ~~~~~~h~~~i~~~~~~~~~~~l~-s~~~dg~--i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~ 307 (413)
...+....+.....+|+||++.|+ +.+.+|. |+++|+.+++... +..+ .......+|+|+++.|+..+. ++ .
T Consensus 254 ~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~-lt~~-~~~~~~p~wSpDG~~I~f~s~~~g~~~ 331 (448)
T PRK04792 254 REKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTR-ITRH-RAIDTEPSWHPDGKSLIFTSERGGKPQ 331 (448)
T ss_pred eEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEE-CccC-CCCccceEECCCCCEEEEEECCCCCce
Confidence 111222223334678999999776 4566665 7788887776443 3322 234567899999998776543 33 5
Q ss_pred EEEEEeCCceeeeee-cCCceeEEEecCCCCEEEEeCC-CC--eEEEEECCCCceEEEecCCCCcEEEEEEccCCeEEE-
Q 040361 308 LHLFSINGKHLASSE-SNGRLNCLELSACGQFLVCGGD-QG--QIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFLA- 382 (413)
Q Consensus 308 i~i~d~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~-dg--~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~- 382 (413)
|+++|+.+....... ........+|+|||++|+..+. ++ .|.++|+.+++.. .+... .......|+|||+.++
T Consensus 332 Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~ 409 (448)
T PRK04792 332 IYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIY 409 (448)
T ss_pred EEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEE
Confidence 777777644433322 2223345789999998877654 33 5666788877653 33322 1223457999986553
Q ss_pred -EcCCC--eEEEEEecC
Q 040361 383 -GTKDG--CLLVYSIEN 396 (413)
Q Consensus 383 -~~~dg--~i~vw~~~~ 396 (413)
...+| .+++++.+.
T Consensus 410 ~~~~~g~~~l~~~~~~G 426 (448)
T PRK04792 410 STTYQGKQVLAAVSIDG 426 (448)
T ss_pred EEecCCceEEEEEECCC
Confidence 33444 367777643
No 250
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.49 E-value=2.5e-10 Score=98.89 Aligned_cols=221 Identities=16% Similarity=0.089 Sum_probs=148.4
Q ss_pred CeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccC----------CCcEEEEEeccccccccccccceeecCCC
Q 040361 156 NSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSY----------DTTVMVWEVIRARAPEKRVRNMQIEAPRK 225 (413)
Q Consensus 156 ~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 225 (413)
+.|.+.|..+++.+..+..-..+- .+ ++||++.|+++.. +..|.+||..+.+.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~--------------- 89 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP--------------- 89 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE---------------
Confidence 899999999999999887533322 24 9999998887755 78999999998872
Q ss_pred ceeeecCceeeeec-------CCCCeEEEEEecCCCEEEEee-C-CCcEEEEEccCCeEEEEEeCCCCCc----------
Q 040361 226 DYVIVETPFHILCG-------HDDIITCLYVSVELDIVISGS-K-DGTCVFHTLREGRYVRSLCHPSGSA---------- 286 (413)
Q Consensus 226 ~~~~~~~~~~~~~~-------h~~~i~~~~~~~~~~~l~s~~-~-dg~i~vwd~~~~~~~~~~~~~~~~~---------- 286 (413)
+..+.- ....-..++++|||++++... . +..|.+.|+.+++.+.++..+.+..
T Consensus 90 --------~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~ 161 (352)
T TIGR02658 90 --------IADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFF 161 (352)
T ss_pred --------EeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccE
Confidence 222221 011223567788888777655 2 5778888887776665543221100
Q ss_pred --------------------eeeE--------------EEcc-CCcEEEEECCCCeEEEEEeCCceeee------ee---
Q 040361 287 --------------------LSKL--------------AASR-HGRIVLYGDDDLSLHLFSINGKHLAS------SE--- 322 (413)
Q Consensus 287 --------------------v~~~--------------~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~------~~--- 322 (413)
.... .+.+ ++..+.+... |.|.+.|+.+..... ..
T Consensus 162 ~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~ 240 (352)
T TIGR02658 162 MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAE 240 (352)
T ss_pred EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccc
Confidence 0000 1123 6666666665 899999965322111 10
Q ss_pred -----cCCceeEEEecCCCCEEEEeC----------CCCeEEEEECCCCceEEEecCCCCcEEEEEEccCCe-EE-E-Ec
Q 040361 323 -----SNGRLNCLELSACGQFLVCGG----------DQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEEC-FL-A-GT 384 (413)
Q Consensus 323 -----~~~~i~~~~~s~~~~~l~~~~----------~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l-~-~~ 384 (413)
..+.+.-++++|+++.+++.. ..+.|.++|..+++.+..+.. ...+..++++||++ +| + ..
T Consensus 241 ~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~ 319 (352)
T TIGR02658 241 KADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALST 319 (352)
T ss_pred cccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCC
Confidence 223344599999999888742 224799999999999998874 45799999999987 44 3 44
Q ss_pred CCCeEEEEEecCCcccccc
Q 040361 385 KDGCLLVYSIENRRTSLPR 403 (413)
Q Consensus 385 ~dg~i~vw~~~~~~~~~~~ 403 (413)
.++.|.+.|..+++.....
T Consensus 320 ~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 320 GDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CCCcEEEEECcCCeEEeee
Confidence 6788999999998766443
No 251
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.46 E-value=2.1e-11 Score=107.33 Aligned_cols=189 Identities=16% Similarity=0.234 Sum_probs=145.2
Q ss_pred CCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEE----------------
Q 040361 186 TDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYV---------------- 249 (413)
Q Consensus 186 ~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~---------------- 249 (413)
|-..++|....||.+++|+...++........ .. -.+..++..|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~-----------------~~---~s~t~~~~~w~L~~~~s~~k~~~~~~ 62 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPI-----------------AS---LSGTCTYTKWGLSADYSPMKWLSLEK 62 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccc-----------------hh---ccCcceeEEEEEEeccchHHHHhHHH
Confidence 44678999999999999999887632221110 00 1111122222
Q ss_pred ----ecCCCEEEEeeCCCcEEEEEccCCeEEEEEe-CCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCceeeee--e
Q 040361 250 ----SVELDIVISGSKDGTCVFHTLREGRYVRSLC-HPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKHLASS--E 322 (413)
Q Consensus 250 ----~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~--~ 322 (413)
+.+...++-|...|.|.+|+...++..+.+. ..+...|.++.++.+-..|.+++.|+.+..|+.....+... .
T Consensus 63 ~~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~ 142 (541)
T KOG4547|consen 63 AKKASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKE 142 (541)
T ss_pred HhhccCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeecc
Confidence 1233468888999999999999999988887 44566899999999999999999999999999986665543 4
Q ss_pred cCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEccC-----Ce-EEE-EcCCCeEEEEEec
Q 040361 323 SNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPE-----EC-FLA-GTKDGCLLVYSIE 395 (413)
Q Consensus 323 ~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~-----~~-~l~-~~~dg~i~vw~~~ 395 (413)
....+.+++++|||..+++++. .|++||+++++.+..|.+|.++|+++.|.-+ |. +++ ...+..+.+|-+.
T Consensus 143 ~~~~~~sl~is~D~~~l~~as~--~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 143 QKPLVSSLCISPDGKILLTASR--QIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred CCCccceEEEcCCCCEEEeccc--eEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence 5567889999999999999874 7999999999999999999999999999877 44 555 5566668888876
Q ss_pred C
Q 040361 396 N 396 (413)
Q Consensus 396 ~ 396 (413)
.
T Consensus 221 ~ 221 (541)
T KOG4547|consen 221 K 221 (541)
T ss_pred c
Confidence 5
No 252
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.46 E-value=2.1e-09 Score=107.76 Aligned_cols=213 Identities=10% Similarity=0.040 Sum_probs=138.3
Q ss_pred eEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeec--C---------------CCeEEEEEECC-CCCEEEEccCC
Q 040361 136 CFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQ--H---------------RDVVSCVAVTT-DGSILATGSYD 197 (413)
Q Consensus 136 ~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~--h---------------~~~v~~~~~~~-~~~~l~s~s~d 197 (413)
...+++.++++.+.++-...+.|+++|..++.. .++.+ . -..-..++++| ++..+++.+.+
T Consensus 626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~ 704 (1057)
T PLN02919 626 PQGLAYNAKKNLLYVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ 704 (1057)
T ss_pred CcEEEEeCCCCEEEEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC
Confidence 355667888887777666678899999877653 33311 0 11346789999 56667777788
Q ss_pred CcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCC-EEEEeeCCCcEEEEEccCCeEE
Q 040361 198 TTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELD-IVISGSKDGTCVFHTLREGRYV 276 (413)
Q Consensus 198 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~ 276 (413)
+.|++||..++.... . ...+...... ........-.....++++|+++ ++++-+.++.|++||+.++...
T Consensus 705 ~~I~v~d~~~g~v~~-----~---~G~G~~~~~~-g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~ 775 (1057)
T PLN02919 705 HQIWEYNISDGVTRV-----F---SGDGYERNLN-GSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSR 775 (1057)
T ss_pred CeEEEEECCCCeEEE-----E---ecCCccccCC-CCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEE
Confidence 999999987654110 0 0000000000 0000001112356799999988 5556666789999999876532
Q ss_pred EEEeC-------------C-------CCCceeeEEEccCCcEEEEECCCCeEEEEEeCCceeeeeec-------------
Q 040361 277 RSLCH-------------P-------SGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKHLASSES------------- 323 (413)
Q Consensus 277 ~~~~~-------------~-------~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~------------- 323 (413)
..... . .......++++++|+++++-..++.|++||..+..+.....
T Consensus 776 ~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~ 855 (1057)
T PLN02919 776 LLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALK 855 (1057)
T ss_pred EEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccc
Confidence 11100 0 00124678999999999999999999999998665543211
Q ss_pred --CCceeEEEecCCCCEEEEeCCCCeEEEEECCCCce
Q 040361 324 --NGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEV 358 (413)
Q Consensus 324 --~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~ 358 (413)
-.....++++++|+++++.+.++.|++||+.+++.
T Consensus 856 a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 856 AQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred cccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 12467899999999999989999999999988764
No 253
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.45 E-value=5.1e-12 Score=118.06 Aligned_cols=191 Identities=14% Similarity=0.171 Sum_probs=150.2
Q ss_pred EEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCC----eEEEEEECCCCCEEEEccCCCcEEEEEeccccccccc
Q 040361 139 TMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRD----VVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKR 214 (413)
Q Consensus 139 ~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~----~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~ 214 (413)
..++-.+..++.+.+ ++.+.+||...+.....+..-.. ...-+.++++.-++++|+.-+.|.+|+.....
T Consensus 93 ~~l~~e~k~i~l~~~-~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn----- 166 (967)
T KOG0974|consen 93 AKLFEENKKIALVTS-RNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN----- 166 (967)
T ss_pred cchhhhcceEEEEEc-CceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC-----
Confidence 333445555555444 88999999988777766653221 12223356677889999999999999987333
Q ss_pred cccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEcc
Q 040361 215 VRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASR 294 (413)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~ 294 (413)
.-..+.+|++.|..+.++.+|+++++.+.|.++++|++.+++........+...+..+++.|
T Consensus 167 ------------------~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~ 228 (967)
T KOG0974|consen 167 ------------------KPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLP 228 (967)
T ss_pred ------------------CcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEecc
Confidence 12257899999999999999999999999999999999998877633333456899999999
Q ss_pred CCcEEEEECCCCeEEEEEeCCceeeee--ecCCceeEEEecCCCCEEEEeCCCCeEEEEECCC
Q 040361 295 HGRIVLYGDDDLSLHLFSINGKHLASS--ESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNS 355 (413)
Q Consensus 295 ~~~~l~~~~~d~~i~i~d~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~ 355 (413)
+ .+++++.|.+.++|+.++..+... .....+..++..++.-.+++++.||.+++||+..
T Consensus 229 n--~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 229 N--RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred c--eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 8 899999999999999988777653 2346789999999999999999999999999754
No 254
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.45 E-value=3.9e-10 Score=112.95 Aligned_cols=253 Identities=9% Similarity=-0.002 Sum_probs=158.2
Q ss_pred EEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeec--------------CCCeEEEEEECCCCCEEEEcc-CCCcEEE
Q 040361 138 TTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQ--------------HRDVVSCVAVTTDGSILATGS-YDTTVMV 202 (413)
Q Consensus 138 ~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~--------------h~~~v~~~~~~~~~~~l~s~s-~dg~i~i 202 (413)
.+++.+.+..++++...++.|+++|.. ++.+..+.+ +-.....++++++++.|+.+. ..+.|+.
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~ 650 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE 650 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence 355666666677767778899999975 555444432 112357899998887665554 4577899
Q ss_pred EEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEec-CCCEEEEeeCCCcEEEEEccCCeEEEEEeC
Q 040361 203 WEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSV-ELDIVISGSKDGTCVFHTLREGRYVRSLCH 281 (413)
Q Consensus 203 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 281 (413)
+|..++... .+....... ............ .-..-..++++| ++.++++.+.++.|++||..++... .+..
T Consensus 651 id~~~~~V~-----tlag~G~~g-~~~~gg~~~~~~-~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G 722 (1057)
T PLN02919 651 IDFVNETVR-----TLAGNGTKG-SDYQGGKKGTSQ-VLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSG 722 (1057)
T ss_pred EecCCCEEE-----EEeccCccc-CCCCCChhhhHh-hcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEec
Confidence 988665410 000000000 000000000000 011235789999 5666777778899999999776543 2211
Q ss_pred C--------------CCCceeeEEEccCCc-EEEEECCCCeEEEEEeCCceeee-ee--------------c--------
Q 040361 282 P--------------SGSALSKLAASRHGR-IVLYGDDDLSLHLFSINGKHLAS-SE--------------S-------- 323 (413)
Q Consensus 282 ~--------------~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~-~~--------------~-------- 323 (413)
. .-.....++++|+++ ++++...++.|++||+++..... .. .
T Consensus 723 ~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~ 802 (1057)
T PLN02919 723 DGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVL 802 (1057)
T ss_pred CCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhh
Confidence 0 012356799999987 55566677899999987432111 00 0
Q ss_pred CCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEec-------------CCCCcEEEEEEccCCeEE-EEcCCCeE
Q 040361 324 NGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYS-------------GVGKIITSLAVTPEECFL-AGTKDGCL 389 (413)
Q Consensus 324 ~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-------------~~~~~v~~~~~~~~~~~l-~~~~dg~i 389 (413)
-.....++++++|+++++-..++.|++||..++....... +.-.....++++++|+++ +-+.++.|
T Consensus 803 l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~I 882 (1057)
T PLN02919 803 LQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLI 882 (1057)
T ss_pred ccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEE
Confidence 1134688999999998999999999999998876543221 111257889999998755 57788999
Q ss_pred EEEEecCCcc
Q 040361 390 LVYSIENRRT 399 (413)
Q Consensus 390 ~vw~~~~~~~ 399 (413)
++||+++++.
T Consensus 883 rvid~~~~~~ 892 (1057)
T PLN02919 883 RYLDLNKGEA 892 (1057)
T ss_pred EEEECCCCcc
Confidence 9999988764
No 255
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.44 E-value=6.1e-11 Score=104.50 Aligned_cols=145 Identities=13% Similarity=0.182 Sum_probs=124.8
Q ss_pred CCCEEEEeecCCCeEEEEEcCCCcEEEEee--cCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceee
Q 040361 144 SENFLITCGNWENSFQVIALNDGRVVQSIR--QHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIE 221 (413)
Q Consensus 144 ~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~ 221 (413)
.+..+++-|...|.|.+|+...|+....+. .|.+.|.++.++.+-..|.+++.|+.+..|+....+
T Consensus 68 ~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~------------ 135 (541)
T KOG4547|consen 68 LDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKV------------ 135 (541)
T ss_pred CCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccce------------
Confidence 455666778889999999999999998887 499999999999999999999999999999998887
Q ss_pred cCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccC-----C
Q 040361 222 APRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRH-----G 296 (413)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-----~ 296 (413)
.+....+....+.+++.+||+..+++++ +.|++||+++++.+..+.+| .++|+++.|-.+ |
T Consensus 136 -----------~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh-~s~v~t~~f~~~~~g~~G 201 (541)
T KOG4547|consen 136 -----------IIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGH-GSPVRTLSFTTLIDGIIG 201 (541)
T ss_pred -----------eeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCC-CcceEEEEEEEecccccc
Confidence 5777888888999999999999999886 78999999999999999987 569999999876 6
Q ss_pred cEEEEEC-CCCeEEEEEeC
Q 040361 297 RIVLYGD-DDLSLHLFSIN 314 (413)
Q Consensus 297 ~~l~~~~-~d~~i~i~d~~ 314 (413)
.+++++. .+..+.+|-+.
T Consensus 202 ~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 202 KYVLSSAAAERGITVWVVE 220 (541)
T ss_pred ceeeeccccccceeEEEEE
Confidence 6666543 45567777765
No 256
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=7.5e-10 Score=97.15 Aligned_cols=252 Identities=15% Similarity=0.167 Sum_probs=155.2
Q ss_pred eEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEc-----cC-----CCcEEEEEe
Q 040361 136 CFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATG-----SY-----DTTVMVWEV 205 (413)
Q Consensus 136 ~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-----s~-----dg~i~iw~~ 205 (413)
|...+++++|+.++.+. +..+.|++..++..+.+.... .+.++.|+|-+.+|.|= .. .-.+.+|++
T Consensus 37 ~~v~~~S~~G~lfA~~~--~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~v 112 (566)
T KOG2315|consen 37 CNVFAYSNNGRLFAYSD--NQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNV 112 (566)
T ss_pred ceeEEEcCCCcEEEEEc--CCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeeeee
Confidence 67778888888777644 789999999888655444333 78999999999988752 11 234779999
Q ss_pred cccccccccccccee----ec----------CCCceeeecC---ceeeeecCCCCeEEEEEecC----------------
Q 040361 206 IRARAPEKRVRNMQI----EA----------PRKDYVIVET---PFHILCGHDDIITCLYVSVE---------------- 252 (413)
Q Consensus 206 ~~~~~~~~~~~~~~~----~~----------~~~~~~~~~~---~~~~~~~h~~~i~~~~~~~~---------------- 252 (413)
+++.........++. .. ..+++.+... ....-.-|...|+.+.++|.
T Consensus 113 et~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGa 192 (566)
T KOG2315|consen 113 ETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGA 192 (566)
T ss_pred ccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCC
Confidence 884322111111111 00 0011000000 00000112333444444443
Q ss_pred ------------------------------------CC-EEE--EeeCC---------CcEEEEEccCCeEEEEEeCCCC
Q 040361 253 ------------------------------------LD-IVI--SGSKD---------GTCVFHTLREGRYVRSLCHPSG 284 (413)
Q Consensus 253 ------------------------------------~~-~l~--s~~~d---------g~i~vwd~~~~~~~~~~~~~~~ 284 (413)
+. +|+ +..-| .++++.++..... .......
T Consensus 193 Pa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~--~V~L~k~ 270 (566)
T KOG2315|consen 193 PASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESV--SVPLLKE 270 (566)
T ss_pred CcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceE--EEecCCC
Confidence 22 111 11111 1344444431111 2222335
Q ss_pred CceeeEEEccCCcEEEE--ECCCCeEEEEEeCCceeeeeecCCceeEEEecCCCCEEEEeCC---CCeEEEEECCCCceE
Q 040361 285 SALSKLAASRHGRIVLY--GDDDLSLHLFSINGKHLASSESNGRLNCLELSACGQFLVCGGD---QGQIVVRSMNSLEVV 359 (413)
Q Consensus 285 ~~v~~~~~~~~~~~l~~--~~~d~~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~i~v~d~~~~~~~ 359 (413)
++|.++.|++++..+++ |-.-..+.+||+++..+.... .++-+++-|+|.|++++.++- .|.|-|||..+.+++
T Consensus 271 GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~-egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i 349 (566)
T KOG2315|consen 271 GPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFP-EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLI 349 (566)
T ss_pred CCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCC-CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhc
Confidence 68999999999976554 556678999999988876654 467789999999999988765 478999999999999
Q ss_pred EEecCCCCcEEEEEEccCCeEE-EEc------CCCeEEEEEecC
Q 040361 360 RRYSGVGKIITSLAVTPEECFL-AGT------KDGCLLVYSIEN 396 (413)
Q Consensus 360 ~~~~~~~~~v~~~~~~~~~~~l-~~~------~dg~i~vw~~~~ 396 (413)
..+..... +-+.|+|||.++ +++ -|+.++||+...
T Consensus 350 ~~~~a~~t--t~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 350 AKFKAANT--TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred cccccCCc--eEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 88875443 446899998654 533 378899999864
No 257
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.43 E-value=3.1e-11 Score=99.37 Aligned_cols=246 Identities=15% Similarity=0.251 Sum_probs=177.0
Q ss_pred EEEecCCCCEEEEeecCCCeEEEEE-cCCCcEEEEeec-CCCeEEEEEECCCCCEEEEccCCCcEEEEEecccccccccc
Q 040361 138 TTMQTPSENFLITCGNWENSFQVIA-LNDGRVVQSIRQ-HRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRV 215 (413)
Q Consensus 138 ~~~~~~~~~~l~~~g~~d~~i~i~~-~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~ 215 (413)
.....|...-++.+ +.|.+++||- .+.++.-..+.. -..+++++.+.++...|+.|-..|++.-+.+...-...
T Consensus 29 ~~~l~~~e~gv~~~-s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm--- 104 (404)
T KOG1409|consen 29 AAILIPKEEGVISV-SEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKM--- 104 (404)
T ss_pred hheeccCCCCeEEc-cccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhc---
Confidence 33344555556654 4499999994 445555544432 45789999999999999999999999888775432111
Q ss_pred ccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccC
Q 040361 216 RNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRH 295 (413)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 295 (413)
...+....|...+..+-|+....++++.+.|..+.-.-.+.+..+..+.... ....+.+.-.
T Consensus 105 ----------------~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~--~~t~~~~d~~ 166 (404)
T KOG1409|consen 105 ----------------TFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFET--PASALQFDAL 166 (404)
T ss_pred ----------------chhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeec--cCCCCceeeE
Confidence 1345567899999999999888999999999887665566665544333211 1122222222
Q ss_pred CcEEEEECCCCeEEEEEeC----CceeeeeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCce-EEEecCCCCcEE
Q 040361 296 GRIVLYGDDDLSLHLFSIN----GKHLASSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEV-VRRYSGVGKIIT 370 (413)
Q Consensus 296 ~~~l~~~~~d~~i~i~d~~----~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~-~~~~~~~~~~v~ 370 (413)
+...|...|.+..-.+. +......++.+.+.+++|.+..+.|++|..|..+.+||+.-.+- ..++.+|.+.|.
T Consensus 167 --~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~ 244 (404)
T KOG1409|consen 167 --YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQ 244 (404)
T ss_pred --EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhh
Confidence 56667777776666554 22223357889999999999999999999999999999975543 356778999999
Q ss_pred EEEEccC-CeEEEEcCCCeEEEEEecCCcccccccccc
Q 040361 371 SLAVTPE-ECFLAGTKDGCLLVYSIENRRTSLPRNVKS 407 (413)
Q Consensus 371 ~~~~~~~-~~~l~~~~dg~i~vw~~~~~~~~~~~~~~~ 407 (413)
.+...+- .++++++.||.|.+|+++..+...+.++..
T Consensus 245 ~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s 282 (404)
T KOG1409|consen 245 ALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDS 282 (404)
T ss_pred hhhhhhhheeeeeccCCCeEEEEeccceeecCcccccc
Confidence 9888776 567799999999999999988887776544
No 258
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.41 E-value=5.9e-09 Score=90.48 Aligned_cols=269 Identities=13% Similarity=0.110 Sum_probs=158.3
Q ss_pred CcEEEEecCceEEEEEeecc-----CCCCCCceeeecCC----------CCccccCCCcCCCcc--cCCCCcccceecce
Q 040361 73 SSIVLVNQGLTLSVKMWLTT-----QLQSGGNFTFSGSQ----------DPFFGVGADILSPRN--VGSPLAESFELGSQ 135 (413)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~-----~~s~~~~~l~~~~~----------d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 135 (413)
+.+.+.+......+..+... .+||||+.++.+.. +..+.+++....... +..+-.........
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~ 106 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTY 106 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCc
Confidence 56777776555444444332 37999999887665 667777653222211 11111111112333
Q ss_pred eEEEEecCCCCEEEEeecC-CCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccc
Q 040361 136 CFTTMQTPSENFLITCGNW-ENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKR 214 (413)
Q Consensus 136 ~~~~~~~~~~~~l~~~g~~-d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~ 214 (413)
...+.++|+|+.++++... +..|.+.|+.+++.+..+.-- +...-...+++..+ +-+.||......+.+.....
T Consensus 107 ~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp-~~~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~g~~~-- 181 (352)
T TIGR02658 107 PWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVP-DCYHIFPTANDTFF--MHCRDGSLAKVGYGTKGNPK-- 181 (352)
T ss_pred cceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCC-CCcEEEEecCCccE--EEeecCceEEEEecCCCceE--
Confidence 4467789999999987755 889999999999999888741 22222222222221 22345554444443322100
Q ss_pred cccceeecCCCceeeecCceeeeecCCCCeE-EEEEec-CCCEEEEeeCCCcEEEEEccCC-----eEEEEEeCC-----
Q 040361 215 VRNMQIEAPRKDYVIVETPFHILCGHDDIIT-CLYVSV-ELDIVISGSKDGTCVFHTLREG-----RYVRSLCHP----- 282 (413)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~-~~~~~~-~~~~l~s~~~dg~i~vwd~~~~-----~~~~~~~~~----- 282 (413)
.. ....+..-..++. .-.|.+ +++++....+ |.|.+-|+... .....+...
T Consensus 182 ~~----------------~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~ 244 (352)
T TIGR02658 182 IK----------------PTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADG 244 (352)
T ss_pred Ee----------------eeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccc
Confidence 00 0011111000000 003455 7777766665 99999996432 222222111
Q ss_pred -CCCceeeEEEccCCcEEEEEC----------CCCeEEEEEeCCc-eeeeeecCCceeEEEecCCCC-EEEEeC-CCCeE
Q 040361 283 -SGSALSKLAASRHGRIVLYGD----------DDLSLHLFSINGK-HLASSESNGRLNCLELSACGQ-FLVCGG-DQGQI 348 (413)
Q Consensus 283 -~~~~v~~~~~~~~~~~l~~~~----------~d~~i~i~d~~~~-~~~~~~~~~~i~~~~~s~~~~-~l~~~~-~dg~i 348 (413)
....+.-++++++++.+++.. ..+.|.++|.... .+........+..++++||++ +|++.. .++.|
T Consensus 245 wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~V 324 (352)
T TIGR02658 245 WRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTL 324 (352)
T ss_pred cCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcE
Confidence 112344599999999888743 2247999999854 444556678899999999999 777666 57889
Q ss_pred EEEECCCCceEEEec
Q 040361 349 VVRSMNSLEVVRRYS 363 (413)
Q Consensus 349 ~v~d~~~~~~~~~~~ 363 (413)
.++|..+++.+.++.
T Consensus 325 sViD~~t~k~i~~i~ 339 (352)
T TIGR02658 325 YIFDAETGKELSSVN 339 (352)
T ss_pred EEEECcCCeEEeeec
Confidence 999999999998883
No 259
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.39 E-value=5.8e-11 Score=106.94 Aligned_cols=236 Identities=15% Similarity=0.193 Sum_probs=161.6
Q ss_pred ceeEEEEecCCCCEEEEeecCCCeEEEEEcCCC---------------cEEEEeecCCCeEEEEEECCCCCEEEEccCCC
Q 040361 134 SQCFTTMQTPSENFLITCGNWENSFQVIALNDG---------------RVVQSIRQHRDVVSCVAVTTDGSILATGSYDT 198 (413)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~---------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg 198 (413)
....++.|.-...+++. |+.||.+++..+.+. ..-++++||++.|..+.|+.+.+.|-|...+|
T Consensus 15 vkL~c~~WNke~gyIAc-gG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIAC-GGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred ceEEEEEEcccCCeEEe-ccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 34456667666666555 556999999987542 12357789999999999999999999999999
Q ss_pred cEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEE
Q 040361 199 TVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRS 278 (413)
Q Consensus 199 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 278 (413)
.|.+|-+-.+...+.- +-....+.|.+++|+.+|..+....+||.|.+=.+. |..+.-
T Consensus 94 lIiVWmlykgsW~EEM---------------------iNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvd-GNRIwg 151 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEM---------------------INNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVD-GNRIWG 151 (1189)
T ss_pred eEEEEeeecccHHHHH---------------------hhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeec-cceecc
Confidence 9999999877632211 112345678899999999999999999999887663 333321
Q ss_pred EeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCce-----------------------------------------
Q 040361 279 LCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKH----------------------------------------- 317 (413)
Q Consensus 279 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~----------------------------------------- 317 (413)
-... +.....+.|++|.+.++.+-.+|.+.+||.++..
T Consensus 152 KeLk-g~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP 230 (1189)
T KOG2041|consen 152 KELK-GQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRP 230 (1189)
T ss_pred hhcc-hheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCC
Confidence 1111 2234556777777777777777777777664321
Q ss_pred ---------------------eeeeecCCceeEEEecCCCCEEEEeCCC---------CeEEEEECCCCceEEEecCCCC
Q 040361 318 ---------------------LASSESNGRLNCLELSACGQFLVCGGDQ---------GQIVVRSMNSLEVVRRYSGVGK 367 (413)
Q Consensus 318 ---------------------~~~~~~~~~i~~~~~s~~~~~l~~~~~d---------g~i~v~d~~~~~~~~~~~~~~~ 367 (413)
.......-.+..+.|+++|.+|++++.+ +.|.+|.. -|+.+.+++....
T Consensus 231 ~lavcy~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~ 309 (1189)
T KOG2041|consen 231 RLAVCYANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGS 309 (1189)
T ss_pred EEEEEEcCceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecCCc
Confidence 0001111235677899999999988754 35666654 4678888888888
Q ss_pred cEEEEEEccCCeEEEEcCCCeEEEEEe
Q 040361 368 IITSLAVTPEECFLAGTKDGCLLVYSI 394 (413)
Q Consensus 368 ~v~~~~~~~~~~~l~~~~dg~i~vw~~ 394 (413)
.|++++|-..|.-++-..|+.|++=++
T Consensus 310 ~It~lsWEg~gLriA~AvdsfiyfanI 336 (1189)
T KOG2041|consen 310 CITGLSWEGTGLRIAIAVDSFIYFANI 336 (1189)
T ss_pred eeeeeEEcCCceEEEEEecceEEEEee
Confidence 899999987776555555555554443
No 260
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.39 E-value=1.1e-10 Score=94.08 Aligned_cols=234 Identities=12% Similarity=0.081 Sum_probs=159.8
Q ss_pred CCCEEEEeecCCCeEEEEEcCCCcEEEEeecCC------CeEEEEEECCCCCEEEEccCCCcEEEEEecccccccccccc
Q 040361 144 SENFLITCGNWENSFQVIALNDGRVVQSIRQHR------DVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRN 217 (413)
Q Consensus 144 ~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~------~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~ 217 (413)
++...++-...+|.|.++..........+++-+ ....++.|++.+..++++-.+|.+.+-+......
T Consensus 83 ~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~l------- 155 (339)
T KOG0280|consen 83 DGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVL------- 155 (339)
T ss_pred CccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeee-------
Confidence 344344445558899999775544444444311 1345778888899999999999998555433320
Q ss_pred ceeecCCCceeeecCceeeeecCCCCeEEEEEec-CCCEEEEeeCCCcEEEEEcc-CCeEEEEEeCCCCCceeeEEEcc-
Q 040361 218 MQIEAPRKDYVIVETPFHILCGHDDIITCLYVSV-ELDIVISGSKDGTCVFHTLR-EGRYVRSLCHPSGSALSKLAASR- 294 (413)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~-~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~~~~v~~~~~~~- 294 (413)
..++..+.|+-+.+...|+. +.+++.+|+.|+.+..||++ .++.+.+-..-+...|.++.-+|
T Consensus 156 --------------e~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~ 221 (339)
T KOG0280|consen 156 --------------EKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPP 221 (339)
T ss_pred --------------eecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCC
Confidence 13456889999999999976 44688999999999999999 45555553322345788887776
Q ss_pred CCcEEEEECCCCeEEEEEeC--CceeeeeecCCceeEEEecCCC--CEEEEeCCCCeEEEEECCCCc-----eEEEecCC
Q 040361 295 HGRIVLYGDDDLSLHLFSIN--GKHLASSESNGRLNCLELSACG--QFLVCGGDQGQIVVRSMNSLE-----VVRRYSGV 365 (413)
Q Consensus 295 ~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~i~~~~~s~~~--~~l~~~~~dg~i~v~d~~~~~-----~~~~~~~~ 365 (413)
.+.+|++|+.|-.|++||.+ ++.+......+.|..+..+|.- +.|+++..+| .+|.+..... .....+.|
T Consensus 222 ~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~h 300 (339)
T KOG0280|consen 222 KPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIH 300 (339)
T ss_pred CCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccc
Confidence 57899999999999999998 6777667777999999999963 4555555555 5666665432 22334456
Q ss_pred CCcEEEEEEccCCeEE-EE-cCCCeEE-EEEecCCcc
Q 040361 366 GKIITSLAVTPEECFL-AG-TKDGCLL-VYSIENRRT 399 (413)
Q Consensus 366 ~~~v~~~~~~~~~~~l-~~-~~dg~i~-vw~~~~~~~ 399 (413)
.+-+..-.|.....++ ++ ..|..++ +|-.-++.+
T Consensus 301 dSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~~~ 337 (339)
T KOG0280|consen 301 DSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITGEP 337 (339)
T ss_pred cceeeccccccccceeeeeeccccceeeeeeeccCCc
Confidence 6656666664332344 43 4677755 887766543
No 261
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.39 E-value=2.6e-11 Score=99.84 Aligned_cols=218 Identities=16% Similarity=0.239 Sum_probs=143.0
Q ss_pred CCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccc-cceeecCCCceeeecCceeeeecCCCCeEEEEEecCC
Q 040361 175 HRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVR-NMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVEL 253 (413)
Q Consensus 175 h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~ 253 (413)
..+-|.++.|...|.+|+||..+|.|.++.-......+..+. ..+...|.-++ +..+ .-...|..+.|.+++
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDY------LkSl-eieEKinkIrw~~~~ 96 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDY------LKSL-EIEEKINKIRWLDDG 96 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccch------hhhh-hhhhhhhhceecCCC
Confidence 446789999999999999999999999997654432111110 00000010000 0011 123568889999866
Q ss_pred C--EEEEeeCCCcEEEEEccCCeE-----------------------------------EEEEeCCCCCceeeEEEccCC
Q 040361 254 D--IVISGSKDGTCVFHTLREGRY-----------------------------------VRSLCHPSGSALSKLAASRHG 296 (413)
Q Consensus 254 ~--~l~s~~~dg~i~vwd~~~~~~-----------------------------------~~~~~~~~~~~v~~~~~~~~~ 296 (413)
+ .++..+.|.+|++|.++.... .+.+...+...|+++.++.|+
T Consensus 97 n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~ 176 (433)
T KOG1354|consen 97 NLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDK 176 (433)
T ss_pred CccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCcc
Confidence 5 577778899999998764211 112222334568899999999
Q ss_pred cEEEEECCCCeEEEEEeC--Cceeeee--------ecCCceeEEEecCC-CCEEEEeCCCCeEEEEECCCCceE----EE
Q 040361 297 RIVLYGDDDLSLHLFSIN--GKHLASS--------ESNGRLNCLELSAC-GQFLVCGGDQGQIVVRSMNSLEVV----RR 361 (413)
Q Consensus 297 ~~l~~~~~d~~i~i~d~~--~~~~~~~--------~~~~~i~~~~~s~~-~~~l~~~~~dg~i~v~d~~~~~~~----~~ 361 (413)
..++++. |-.|.+|+++ .+..... ....-|++..|+|. .+.++..+..|+|++.|++...+. ..
T Consensus 177 Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKl 255 (433)
T KOG1354|consen 177 ETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKL 255 (433)
T ss_pred ceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhh
Confidence 8888765 5689999987 2222211 12245888999997 578888999999999999853221 11
Q ss_pred ec------------CCCCcEEEEEEccCCeEEEEcCCCeEEEEEecCCccc
Q 040361 362 YS------------GVGKIITSLAVTPEECFLAGTKDGCLLVYSIENRRTS 400 (413)
Q Consensus 362 ~~------------~~~~~v~~~~~~~~~~~l~~~~dg~i~vw~~~~~~~~ 400 (413)
+. .--..|..+.|+++|+++..-+=-+|++||+.....+
T Consensus 256 fEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~p 306 (433)
T KOG1354|consen 256 FEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKP 306 (433)
T ss_pred hccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCc
Confidence 11 1124688999999999887766689999999654333
No 262
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.39 E-value=7.5e-09 Score=86.52 Aligned_cols=250 Identities=14% Similarity=0.201 Sum_probs=168.1
Q ss_pred cceeEEEEecCCCCEEEEeecC--CCeEEEEEcCC--CcEEE--EeecCCCeEEEEEECCCCCEEEEccC-CCcEEEEEe
Q 040361 133 GSQCFTTMQTPSENFLITCGNW--ENSFQVIALND--GRVVQ--SIRQHRDVVSCVAVTTDGSILATGSY-DTTVMVWEV 205 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~g~~--d~~i~i~~~~~--~~~~~--~~~~h~~~v~~~~~~~~~~~l~s~s~-dg~i~iw~~ 205 (413)
.....-+.++++.+.|.++... +|.|.-|.++. |+... ....-..+-+-+++++++++|+++.. -|.|.++-+
T Consensus 39 ~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~ 118 (346)
T COG2706 39 LGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPL 118 (346)
T ss_pred cCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEc
Confidence 4556677889999888887665 67777777754 55432 11112233378999999999999875 588999998
Q ss_pred ccccccccccccceeecCCCceeeecCceeeeecCCCC----------eEEEEEecCCCEEEEeeC-CCcEEEEEccCCe
Q 040361 206 IRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDI----------ITCLYVSVELDIVISGSK-DGTCVFHTLREGR 274 (413)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~----------i~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~ 274 (413)
......... .....|.+. +....+.|++++|++.+. --+|.+|++..|.
T Consensus 119 ~~dG~l~~~--------------------v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~ 178 (346)
T COG2706 119 QADGSLQPV--------------------VQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGK 178 (346)
T ss_pred ccCCccccc--------------------eeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCc
Confidence 664322211 111223333 777889999999988764 2368999998776
Q ss_pred EEEE--EeCCCCCceeeEEEccCCcEEEEECC-CCeEEEEEeCC--ceeeee----------ecCCceeEEEecCCCCEE
Q 040361 275 YVRS--LCHPSGSALSKLAASRHGRIVLYGDD-DLSLHLFSING--KHLASS----------ESNGRLNCLELSACGQFL 339 (413)
Q Consensus 275 ~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~d~~~--~~~~~~----------~~~~~i~~~~~s~~~~~l 339 (413)
.... .....+...+.|.|+|++++.++.+. +++|.+|..+. ..+... ........+.+++||++|
T Consensus 179 L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFL 258 (346)
T COG2706 179 LTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFL 258 (346)
T ss_pred cccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEE
Confidence 5432 12234567899999999999877654 78999999874 232221 233457788999999999
Q ss_pred EEeCC-CCeEEEEECCC--Cce--EEEecCCCCcEEEEEEccCCeEE-EEc-CCCeEEEEEecCCccccc
Q 040361 340 VCGGD-QGQIVVRSMNS--LEV--VRRYSGVGKIITSLAVTPEECFL-AGT-KDGCLLVYSIENRRTSLP 402 (413)
Q Consensus 340 ~~~~~-dg~i~v~d~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l-~~~-~dg~i~vw~~~~~~~~~~ 402 (413)
.++.. ...|.+|.+.. +++ +.....+....+...|++++++| ++. .+..|.+|..+.....+.
T Consensus 259 YasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~ 328 (346)
T COG2706 259 YASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLT 328 (346)
T ss_pred EEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEE
Confidence 98854 34788887653 332 23333455557899999998766 444 456799998876554443
No 263
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.38 E-value=7.3e-12 Score=122.98 Aligned_cols=220 Identities=13% Similarity=0.247 Sum_probs=161.4
Q ss_pred ceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeec-CCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccc
Q 040361 134 SQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQ-HRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPE 212 (413)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~ 212 (413)
..+.++.-.|...+++. |+.||.+++|....++.+..++. -...|+.+.|+.+|+.+..+..||.+.+|.+. .+
T Consensus 2209 ~~v~r~~sHp~~~~Ylt-gs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk--- 2283 (2439)
T KOG1064|consen 2209 ENVRRMTSHPSDPYYLT-GSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PK--- 2283 (2439)
T ss_pred CceeeecCCCCCceEEe-cCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Cc---
Confidence 34555555666777666 56699999999999888877753 44889999999999999999999999999986 22
Q ss_pred cccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEee---CCCcEEEEEccCCeEEEEEeCCCCCceee
Q 040361 213 KRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGS---KDGTCVFHTLREGRYVRSLCHPSGSALSK 289 (413)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~---~dg~i~vwd~~~~~~~~~~~~~~~~~v~~ 289 (413)
+....+.|......+.|-. ..+++++ .++.+.+||..-.....-+...+...+++
T Consensus 2284 --------------------~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~ 2341 (2439)
T KOG1064|consen 2284 --------------------PYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATV 2341 (2439)
T ss_pred --------------------ceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceE
Confidence 5667788999888888876 5666654 46799999964322111111223557999
Q ss_pred EEEccCCcEEEEECCCCeEEEEEeCCceeeeeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecC---CC
Q 040361 290 LAASRHGRIVLYGDDDLSLHLFSINGKHLASSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSG---VG 366 (413)
Q Consensus 290 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~---~~ 366 (413)
+++.|..+.+++|+.+|.|++||++..++...- +. +. ...++++|+..|.++||++.....+..++. |.
T Consensus 2342 l~~~P~~qllisggr~G~v~l~D~rqrql~h~~---~~----~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~ 2413 (2439)
T KOG1064|consen 2342 LAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTF---QA----LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQ 2413 (2439)
T ss_pred EEEcCcceEEEecCCcCcEEEeehHHHHHHHHh---hh----hh-hhheeeccCcccceEEEEccccchhhcCchhhccc
Confidence 999999999999999999999999865543211 11 44 567999999999999999998877777652 11
Q ss_pred Cc--E--EEEEEccCCeEEEEcCCCe
Q 040361 367 KI--I--TSLAVTPEECFLAGTKDGC 388 (413)
Q Consensus 367 ~~--v--~~~~~~~~~~~l~~~~dg~ 388 (413)
+- . ..+...+.+++.+|+.||+
T Consensus 2414 gfFr~~g~Q~~v~~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2414 GFFRNIGMQINVGQCNRIFSCGADGT 2439 (2439)
T ss_pred chhhhcCceeeeccCceEEEecCCCC
Confidence 10 0 2233344467777777763
No 264
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.36 E-value=2.9e-10 Score=91.81 Aligned_cols=194 Identities=12% Similarity=0.089 Sum_probs=128.3
Q ss_pred eeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEE--EEeecCCCeEEEEEECC-CCCEEEEccCCCcEEEEEecccccc
Q 040361 135 QCFTTMQTPSENFLITCGNWENSFQVIALNDGRVV--QSIRQHRDVVSCVAVTT-DGSILATGSYDTTVMVWEVIRARAP 211 (413)
Q Consensus 135 ~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~--~~~~~h~~~v~~~~~~~-~~~~l~s~s~dg~i~iw~~~~~~~~ 211 (413)
.+.++.|++.+..+++. ..+|.+.+-+...+... +.++.|.-++....|+. +.+.+++|+.|+.+..||++-...
T Consensus 123 ~~lslD~~~~~~~i~vs-~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~- 200 (339)
T KOG0280|consen 123 EALSLDISTSGTKIFVS-DSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT- 200 (339)
T ss_pred eeeEEEeeccCceEEEE-cCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc-
Confidence 47788888888887764 44888886665555444 47889999999999976 457899999999999999983331
Q ss_pred ccccccceeecCCCceeeecCceeeeecCCCCeEEEEEec-CCCEEEEeeCCCcEEEEEcc-CCeEEEEEeCCCCCceee
Q 040361 212 EKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSV-ELDIVISGSKDGTCVFHTLR-EGRYVRSLCHPSGSALSK 289 (413)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~-~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~~~~v~~ 289 (413)
-.-...+-|...|.++.-+| .+.++++|+.|-.|++||.+ -++++..-.. +..|..
T Consensus 201 --------------------~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v--~GGVWR 258 (339)
T KOG0280|consen 201 --------------------FIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKV--GGGVWR 258 (339)
T ss_pred --------------------eeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCcc--ccceEE
Confidence 01223567899999998886 56799999999999999998 4555544333 457999
Q ss_pred EEEccCCc-EEEEECCCCeEEEEEeCCceee---ee----ecCCceeEEEecCCCCEEEEeC-CCCeEE-EEE
Q 040361 290 LAASRHGR-IVLYGDDDLSLHLFSINGKHLA---SS----ESNGRLNCLELSACGQFLVCGG-DQGQIV-VRS 352 (413)
Q Consensus 290 ~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~---~~----~~~~~i~~~~~s~~~~~l~~~~-~dg~i~-v~d 352 (413)
+..+|.-. .++.++.-.-.++-+.+.+... .. .|.+-...-.|.....++++++ .|..++ +|-
T Consensus 259 i~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl 331 (339)
T KOG0280|consen 259 IKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWL 331 (339)
T ss_pred EEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeee
Confidence 99998432 3333333344666666532222 11 2333333334432334566654 344433 553
No 265
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.35 E-value=3.6e-09 Score=95.73 Aligned_cols=297 Identities=16% Similarity=0.193 Sum_probs=169.4
Q ss_pred CeEEEEeecCCcEEEEecCceEEEEEeecc-------CCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecce
Q 040361 63 SGIVYVGMLDSSIVLVNQGLTLSVKMWLTT-------QLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQ 135 (413)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (413)
...++++..++.++.++..... .+|... ....++..++.++.++.+..++.. ..+..... .....
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~--~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~-tG~~~W~~-----~~~~~ 136 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGK--RLWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAE-DGKELWRA-----KLSSE 136 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCc--EeeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECC-CCcEeeee-----ccCce
Confidence 3456667777777777754322 244321 122356677777777766554311 11111100 01111
Q ss_pred eEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEE-----EEEECCCCCEEEEccCCCcEEEEEeccccc
Q 040361 136 CFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVS-----CVAVTTDGSILATGSYDTTVMVWEVIRARA 210 (413)
Q Consensus 136 ~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~-----~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~ 210 (413)
+...... .++.+++ +..++.++.||..+|+.+..+......+. .... .+..++.+..++.+..+|.++++.
T Consensus 137 ~~~~p~v-~~~~v~v-~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~ 212 (377)
T TIGR03300 137 VLSPPLV-ANGLVVV-RTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQP 212 (377)
T ss_pred eecCCEE-ECCEEEE-ECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCE
Confidence 1111111 2344444 44489999999999998877754332211 1111 134678888899999999988863
Q ss_pred cccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeE
Q 040361 211 PEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKL 290 (413)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~ 290 (413)
.+... ...+... .....+... .....+ .+..++.++.+|.+..||..+|+.+....... ....
T Consensus 213 ~W~~~----~~~~~g~-----~~~~~~~~~---~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~---~~~p 275 (377)
T TIGR03300 213 LWEQR----VALPKGR-----TELERLVDV---DGDPVV--DGGQVYAVSYQGRVAALDLRSGRVLWKRDASS---YQGP 275 (377)
T ss_pred eeeec----cccCCCC-----Cchhhhhcc---CCccEE--ECCEEEEEEcCCEEEEEECCCCcEEEeeccCC---ccCc
Confidence 22110 0000000 000000000 001111 24577778889999999999999887765321 1122
Q ss_pred EEccCCcEEEEECCCCeEEEEEeC-Cceeeee-ecCC-ceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCC
Q 040361 291 AASRHGRIVLYGDDDLSLHLFSIN-GKHLASS-ESNG-RLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGK 367 (413)
Q Consensus 291 ~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~-~~~~-~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~ 367 (413)
. ..+..+++++.+|.++.+|.. ++.+... .... ....... .+..+++++.+|.|+++|..+++.+.+++.+..
T Consensus 276 ~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~ 351 (377)
T TIGR03300 276 A--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGS 351 (377)
T ss_pred e--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCC
Confidence 2 246678888899999999997 4444332 1111 1222222 467899999999999999999999988886664
Q ss_pred cEEEEEEccCCeEEEEcCCCeEEEE
Q 040361 368 IITSLAVTPEECFLAGTKDGCLLVY 392 (413)
Q Consensus 368 ~v~~~~~~~~~~~l~~~~dg~i~vw 392 (413)
.+..--...+++++.++.||.|+.|
T Consensus 352 ~~~~sp~~~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 352 GIASPPVVVGDGLLVQTRDGDLYAF 376 (377)
T ss_pred ccccCCEEECCEEEEEeCCceEEEe
Confidence 4333222335678889999999876
No 266
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.35 E-value=5.3e-09 Score=87.41 Aligned_cols=263 Identities=13% Similarity=0.112 Sum_probs=165.9
Q ss_pred CCCCCCceeeecCCCCc-cccCCCcCCCc-ccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCC-CcEE
Q 040361 93 QLQSGGNFTFSGSQDPF-FGVGADILSPR-NVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALND-GRVV 169 (413)
Q Consensus 93 ~~s~~~~~l~~~~~d~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~-~~~~ 169 (413)
.++|+++.|+++..++. -.+....+++. ..-..+.+..........++.++++++++++....|.|.++-++. |.+.
T Consensus 46 ~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~ 125 (346)
T COG2706 46 AVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQ 125 (346)
T ss_pred EECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccc
Confidence 46888888888766522 12222224432 111111111112333356778999999999888899999999865 4433
Q ss_pred EE--eecCCCe----------EEEEEECCCCCEEEEccC-CCcEEEEEeccccccccccccceeecCCCceeeecCceee
Q 040361 170 QS--IRQHRDV----------VSCVAVTTDGSILATGSY-DTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHI 236 (413)
Q Consensus 170 ~~--~~~h~~~----------v~~~~~~~~~~~l~s~s~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (413)
.. ...|.+. +....+.|++++|++..- --.|.+|++..+..... ....
T Consensus 126 ~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~-------------------~~~~ 186 (346)
T COG2706 126 PVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPA-------------------DPAE 186 (346)
T ss_pred cceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccc-------------------cccc
Confidence 22 1225555 888999999999998753 23589999986652111 0111
Q ss_pred eecCCCCeEEEEEecCCCEEEEee-CCCcEEEEEccCC-eEEEEEe--------CCCCCceeeEEEccCCcEEEEECC-C
Q 040361 237 LCGHDDIITCLYVSVELDIVISGS-KDGTCVFHTLREG-RYVRSLC--------HPSGSALSKLAASRHGRIVLYGDD-D 305 (413)
Q Consensus 237 ~~~h~~~i~~~~~~~~~~~l~s~~-~dg~i~vwd~~~~-~~~~~~~--------~~~~~~v~~~~~~~~~~~l~~~~~-d 305 (413)
+ .-...-..|.|+|++++....+ -+++|.+|..... ..+..+. .........+.++++|++|+++.. .
T Consensus 187 v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~ 265 (346)
T COG2706 187 V-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGH 265 (346)
T ss_pred c-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCC
Confidence 2 2334568899999999876555 4899999998763 2222221 112346778999999999998864 3
Q ss_pred CeEEEEEeC--Cceeeee---e-cCCceeEEEecCCCCEEEEeCCCC-eEEEEECC--CCceEEEec-CCCCcEEEEEEc
Q 040361 306 LSLHLFSIN--GKHLASS---E-SNGRLNCLELSACGQFLVCGGDQG-QIVVRSMN--SLEVVRRYS-GVGKIITSLAVT 375 (413)
Q Consensus 306 ~~i~i~d~~--~~~~~~~---~-~~~~i~~~~~s~~~~~l~~~~~dg-~i~v~d~~--~~~~~~~~~-~~~~~v~~~~~~ 375 (413)
..|-+|.+. +..+... . +........|++.|++|+++.+++ .|.+|... +|++-.... .......|+.|.
T Consensus 266 dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 266 DSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred CeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 378888776 4444432 2 333478999999999999988654 68888654 555443332 233445666664
No 267
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.34 E-value=8.4e-12 Score=122.56 Aligned_cols=192 Identities=15% Similarity=0.198 Sum_probs=149.9
Q ss_pred ecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeee-cCCCCeEEEEEec
Q 040361 173 RQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILC-GHDDIITCLYVSV 251 (413)
Q Consensus 173 ~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~i~~~~~~~ 251 (413)
+.+-..|.++.-+|...+.+||+.||.|++|....++ .+..+. .-...|+.+.|+.
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~-----------------------~v~~~rt~g~s~vtr~~f~~ 2261 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQ-----------------------QVVCFRTAGNSRVTRSRFNH 2261 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCC-----------------------eEEEeeccCcchhhhhhhcc
Confidence 3355778888888988999999999999999987776 333332 2237899999999
Q ss_pred CCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEEC---CCCeEEEEEeC---CceeeeeecCC
Q 040361 252 ELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGD---DDLSLHLFSIN---GKHLASSESNG 325 (413)
Q Consensus 252 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~i~d~~---~~~~~~~~~~~ 325 (413)
+|+.+..+..||.+.+|... .+.......+ +.......|-. ..+++++ .++.+.+||.. ..-+....|.+
T Consensus 2262 qGnk~~i~d~dg~l~l~q~~-pk~~~s~qch-nk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~ 2337 (2439)
T KOG1064|consen 2262 QGNKFGIVDGDGDLSLWQAS-PKPYTSWQCH-NKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDG 2337 (2439)
T ss_pred cCCceeeeccCCceeecccC-CcceeccccC-Cccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCC
Confidence 99999999999999999986 4555555554 33556666654 4455543 46789999986 33344477999
Q ss_pred ceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEccCCeEEEEcCCCeEEEEEecCCccc
Q 040361 326 RLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFLAGTKDGCLLVYSIENRRTS 400 (413)
Q Consensus 326 ~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~dg~i~vw~~~~~~~~ 400 (413)
.++++++.|..+.|++|+.+|.|++||++..++++.++. ++....|++|+..|.|+||++......
T Consensus 2338 gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~~~~~f~~~ss~g~ikIw~~s~~~ll 2403 (2439)
T KOG1064|consen 2338 GATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LDTREYFVTGSSEGNIKIWRLSEFGLL 2403 (2439)
T ss_pred CceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hhhhheeeccCcccceEEEEccccchh
Confidence 999999999999999999999999999999888877764 443456778999999999999886443
No 268
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.33 E-value=3.2e-12 Score=111.63 Aligned_cols=211 Identities=16% Similarity=0.205 Sum_probs=152.4
Q ss_pred EEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEE
Q 040361 169 VQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLY 248 (413)
Q Consensus 169 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~ 248 (413)
+..+.+|...|..++--.+.+-+++++.|++|++|.++......+ ...+..++..|+.+|..+.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~----------------tsaCQfTY~aHkk~i~~ig 791 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIG----------------TSACQFTYQAHKKPIHDIG 791 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccc----------------cceeeeEhhhccCccccee
Confidence 456789999999998878888999999999999999975442111 1125677889999999999
Q ss_pred EecCCCEEEEeeCCCcEEEEEccCCeEEEEEe-CCCCCceeeEEEcc--CCcEEEEE-CCCCeEEEEEeCCc----eeee
Q 040361 249 VSVELDIVISGSKDGTCVFHTLREGRYVRSLC-HPSGSALSKLAASR--HGRIVLYG-DDDLSLHLFSINGK----HLAS 320 (413)
Q Consensus 249 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~l~~~-~~d~~i~i~d~~~~----~~~~ 320 (413)
|-.+.++++++ ||.|.+||.--++.+..+. .+..+.+..+..-+ +..+++++ +...+|+++|.+.. ....
T Consensus 792 fL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kV 869 (1034)
T KOG4190|consen 792 FLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKV 869 (1034)
T ss_pred eeeccceeeec--cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEe
Confidence 99988888765 8999999988887766443 22223334444433 34455555 67889999999832 2222
Q ss_pred e---ecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEccCCeEE-EEcCCCeEEE-EEec
Q 040361 321 S---ESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFL-AGTKDGCLLV-YSIE 395 (413)
Q Consensus 321 ~---~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~dg~i~v-w~~~ 395 (413)
. ..+..+.+++..+.|++++++-.+|.|.+.|.++|+.+..+.........++-- ..+++ ....|.++.+ |..-
T Consensus 870 cna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaap-sdq~L~~saldHslaVnWhal 948 (1034)
T KOG4190|consen 870 CNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAAP-SDQALAQSALDHSLAVNWHAL 948 (1034)
T ss_pred ccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcCc-hhHHHHhhcccceeEeeehhc
Confidence 2 234668999999999999999999999999999999998887655544444433 33444 3666777777 7665
Q ss_pred CCc
Q 040361 396 NRR 398 (413)
Q Consensus 396 ~~~ 398 (413)
++.
T Consensus 949 dgi 951 (1034)
T KOG4190|consen 949 DGI 951 (1034)
T ss_pred CCe
Confidence 543
No 269
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=1.4e-09 Score=98.45 Aligned_cols=206 Identities=13% Similarity=0.098 Sum_probs=128.3
Q ss_pred eeEEEEecCCCCE-EEEeecC--CCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEE-ccCC--CcEEEEEeccc
Q 040361 135 QCFTTMQTPSENF-LITCGNW--ENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILAT-GSYD--TTVMVWEVIRA 208 (413)
Q Consensus 135 ~~~~~~~~~~~~~-l~~~g~~--d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s-~s~d--g~i~iw~~~~~ 208 (413)
....-.|+|+|+. ++.+... +..|+++|+.+++...... ..+......|+|||+.|+. .+.+ ..|.++++.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 5678899999986 5544443 3579999998887655443 4555667889999987754 3334 45666676555
Q ss_pred cccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEee-CCC--cEEEEEccCCeEEEEEeCCCCC
Q 040361 209 RAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGS-KDG--TCVFHTLREGRYVRSLCHPSGS 285 (413)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~-~dg--~i~vwd~~~~~~~~~~~~~~~~ 285 (413)
. ...+..+........|+|||+.++-.+ ..+ .|.++|+.+++..+..... .
T Consensus 268 ~------------------------~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g--~ 321 (419)
T PRK04043 268 T------------------------LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHG--K 321 (419)
T ss_pred c------------------------EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCC--C
Confidence 4 222333333334567999998766554 333 5888888777664433221 1
Q ss_pred ceeeEEEccCCcEEEEECCC---------CeEEEEEeCCceeeeeecCCceeEEEecCCCCEEEEeCCCC---eEEEEEC
Q 040361 286 ALSKLAASRHGRIVLYGDDD---------LSLHLFSINGKHLASSESNGRLNCLELSACGQFLVCGGDQG---QIVVRSM 353 (413)
Q Consensus 286 ~v~~~~~~~~~~~l~~~~~d---------~~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~i~v~d~ 353 (413)
....|+|+|+.++..... ..|.+.|+.+................|+|||+.++..+.++ .+.+.++
T Consensus 322 --~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l 399 (419)
T PRK04043 322 --NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRL 399 (419)
T ss_pred --cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCCCcCCeEECCCCCEEEEEEccCCcEEEEEEec
Confidence 124899999988776543 36888888755444433333444688999999887655332 4666676
Q ss_pred CCCceEEEecCCCCcEE
Q 040361 354 NSLEVVRRYSGVGKIIT 370 (413)
Q Consensus 354 ~~~~~~~~~~~~~~~v~ 370 (413)
.. .....+....+.+.
T Consensus 400 ~g-~~~~~l~~~~g~~~ 415 (419)
T PRK04043 400 NY-NKSFLFPLKVGKIQ 415 (419)
T ss_pred CC-CeeEEeecCCCccC
Confidence 54 33333433333343
No 270
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.32 E-value=2e-11 Score=110.17 Aligned_cols=275 Identities=13% Similarity=0.164 Sum_probs=183.6
Q ss_pred CCCCCCceeeecCCCCccccCCC-cCCCcccCCCCcccceecceeEEEEecCC--CCEEEEeecCCCeEEEEEcC---CC
Q 040361 93 QLQSGGNFTFSGSQDPFFGVGAD-ILSPRNVGSPLAESFELGSQCFTTMQTPS--ENFLITCGNWENSFQVIALN---DG 166 (413)
Q Consensus 93 ~~s~~~~~l~~~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~g~~d~~i~i~~~~---~~ 166 (413)
..+|.|+-++.++..|.+.+-.+ ...+...-..+. .-.+-...|++. -.+.++..+ ...-.+|++. +.
T Consensus 31 si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~t-----pw~vad~qws~h~a~~~wiVsts-~qkaiiwnlA~ss~~ 104 (1081)
T KOG0309|consen 31 SINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHIT-----PWQVADVQWSPHPAKPYWIVSTS-NQKAIIWNLAKSSSN 104 (1081)
T ss_pred eeccccchhhhhhhcCeEEEeccCCCCCceeeeccC-----cchhcceecccCCCCceeEEecC-cchhhhhhhhcCCcc
Confidence 45788888888888888766421 222221111111 223444555554 455666554 5566788874 23
Q ss_pred cEEEEeecCCCeEEEEEECCC-CCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeE
Q 040361 167 RVVQSIRQHRDVVSCVAVTTD-GSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIIT 245 (413)
Q Consensus 167 ~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 245 (413)
.....+.+|...|+.+-|.|+ ...+++++.|..+..||++.... ++.....-...-.
T Consensus 105 aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~----------------------p~ys~~~w~s~as 162 (1081)
T KOG0309|consen 105 AIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR----------------------PFYSTSSWRSAAS 162 (1081)
T ss_pred ceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc----------------------ceeeeecccccCc
Confidence 444566789999999999985 56789999999999999988762 5555555556667
Q ss_pred EEEEecCCCEEEEeeCCCcEEEEEccCCe-EEEEEeCCCCCceeeEEEcc-CCcEEEEECCCCeEEEEEeCCc--e-eee
Q 040361 246 CLYVSVELDIVISGSKDGTCVFHTLREGR-YVRSLCHPSGSALSKLAASR-HGRIVLYGDDDLSLHLFSINGK--H-LAS 320 (413)
Q Consensus 246 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~--~-~~~ 320 (413)
.++|+.....+.+.+....|++||++.|. ++..++.+ -..++.+.|.. -...+.+.+.|++|++||.... . -..
T Consensus 163 qVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~-vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~ 241 (1081)
T KOG0309|consen 163 QVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGH-VSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRT 241 (1081)
T ss_pred eeeecccCcchhhhccCCceEEEeccCCCcceEEeccc-ceeeehHHHhhhhhhhhcccCCCCceeeeccccccccccee
Confidence 88998755556666677889999999775 45556553 45677777765 2456788899999999999722 1 222
Q ss_pred eecCCceeEEEecCCCC--EEEEeCCCCeEEEEECC---------C-CceEEEecCCCCcEEEEEEcc--------C---
Q 040361 321 SESNGRLNCLELSACGQ--FLVCGGDQGQIVVRSMN---------S-LEVVRRYSGVGKIITSLAVTP--------E--- 377 (413)
Q Consensus 321 ~~~~~~i~~~~~s~~~~--~l~~~~~dg~i~v~d~~---------~-~~~~~~~~~~~~~v~~~~~~~--------~--- 377 (413)
...+.++..-.+.|-|+ ++.---.+..+.+++.+ + .+++++|.||.+.|...-|-. |
T Consensus 242 vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rd 321 (1081)
T KOG0309|consen 242 VTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRD 321 (1081)
T ss_pred ccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccc
Confidence 44566777777777654 22222222244444433 2 357899999999887766643 2
Q ss_pred CeEEEEcCCCeEEEEEecC
Q 040361 378 ECFLAGTKDGCLLVYSIEN 396 (413)
Q Consensus 378 ~~~l~~~~dg~i~vw~~~~ 396 (413)
-++++-+.|..+++|-+.+
T Consensus 322 fQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 322 FQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred eeEEEeecCCceEeeeccH
Confidence 2588899999999999875
No 271
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.32 E-value=1.2e-09 Score=94.89 Aligned_cols=292 Identities=14% Similarity=0.153 Sum_probs=179.0
Q ss_pred cCCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecC--------------CCe
Q 040361 92 TQLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNW--------------ENS 157 (413)
Q Consensus 92 ~~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~--------------d~~ 157 (413)
..+||.|.++++.+..+.... ...... .+... .+..+..+.|+|.+.+|...... ++.
T Consensus 38 ~~~SP~G~~l~~~~~~~V~~~-----~g~~~~-~l~~~--~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~ 109 (561)
T COG5354 38 VSESPLGTYLFSEHAAGVECW-----GGPSKA-KLVRF--RHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNN 109 (561)
T ss_pred eeecCcchheehhhccceEEc-----cccchh-heeee--ecCCceecccCcccceeeeeccCCccChhhccCCccccCc
Confidence 357899999988877776543 221111 11111 25667778888999888876431 236
Q ss_pred EEEEEcCCCcEEEEeecCCCe--EE-EEEECCCCCEEEEccCCCcEEEEEeccccccccccccc--------eeecC-CC
Q 040361 158 FQVIALNDGRVVQSIRQHRDV--VS-CVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNM--------QIEAP-RK 225 (413)
Q Consensus 158 i~i~~~~~~~~~~~~~~h~~~--v~-~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~--------~~~~~-~~ 225 (413)
+.+||+.+|..+..+.+-..+ .. -+.|+.+.++++-. -...++++++ +..........+ ...+. ..
T Consensus 110 ~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~ 187 (561)
T COG5354 110 VFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNH 187 (561)
T ss_pred eeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEecCCCCC
Confidence 899999999999998876555 45 67888887776654 2356899997 443322222111 11111 11
Q ss_pred ceeeecCc--------eeeeecCCCCe-----------EEEEEecCCCEEEEee-----------CCCcEEEEEccCCeE
Q 040361 226 DYVIVETP--------FHILCGHDDII-----------TCLYVSVELDIVISGS-----------KDGTCVFHTLREGRY 275 (413)
Q Consensus 226 ~~~~~~~~--------~~~~~~h~~~i-----------~~~~~~~~~~~l~s~~-----------~dg~i~vwd~~~~~~ 275 (413)
+.++..++ +..+.-....+ ..+.|.+.|++++.-- ....+.+++++...
T Consensus 188 ~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~- 266 (561)
T COG5354 188 DELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS- 266 (561)
T ss_pred ceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc-
Confidence 11111111 11111111111 1345666666554211 12356677765332
Q ss_pred EEEEeCCCCCceeeEEEccCCcEEEE--ECCCCeEEEEEeCCceeeeeecCCceeEEEecCCCCEEEEeCCC---CeEEE
Q 040361 276 VRSLCHPSGSALSKLAASRHGRIVLY--GDDDLSLHLFSINGKHLASSESNGRLNCLELSACGQFLVCGGDQ---GQIVV 350 (413)
Q Consensus 276 ~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~d~~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~v 350 (413)
+.... ....+|...+|.|.++.+++ |..+..+.++|++++ +........=+.+.|+|.+++++.++-| |.+.+
T Consensus 267 i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i 344 (561)
T COG5354 267 IPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEI 344 (561)
T ss_pred cceec-cccccceeeeecccCCceeEEecccccceeecccccc-eEEecCCcccccccccCcccEEEEecCCccccceEE
Confidence 22222 22458999999998776654 457888999999988 4444455666788999999999987655 68999
Q ss_pred EECCCCceEE-EecCCCCcEEEEEEccCCeEE-E--Ec----CCCeEEEEEecCCc
Q 040361 351 RSMNSLEVVR-RYSGVGKIITSLAVTPEECFL-A--GT----KDGCLLVYSIENRR 398 (413)
Q Consensus 351 ~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l-~--~~----~dg~i~vw~~~~~~ 398 (413)
||......+. .+.+.. ..-+.|+||++|+ + .+ .|..|.+|++...+
T Consensus 345 ~~~~~rf~~~~~~~~~n--~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~ 398 (561)
T COG5354 345 FDPAGRFKVAGAFNGLN--TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAK 398 (561)
T ss_pred eccCCceEEEEEeecCC--ceEeeccCCceEEEecCCCcccccCcceEEEEecCch
Confidence 9988755444 665543 3456899998766 3 22 47889999997654
No 272
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.31 E-value=7.2e-10 Score=100.91 Aligned_cols=239 Identities=14% Similarity=0.105 Sum_probs=176.6
Q ss_pred EEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCC------C------CEEEEccCCCcEEEEEe
Q 040361 138 TTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTD------G------SILATGSYDTTVMVWEV 205 (413)
Q Consensus 138 ~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~------~------~~l~s~s~dg~i~iw~~ 205 (413)
++.|+|.| |++-|+ ...|.+.|..+-+.++.++.|...|+.+.|.|- + -.|+++...|.|.+||+
T Consensus 20 A~Dw~~~G--LiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~ 96 (1062)
T KOG1912|consen 20 AADWSPSG--LIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDF 96 (1062)
T ss_pred ccccCccc--eEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEe
Confidence 34455555 444465 678999999999999999999999999999882 1 25778888999999999
Q ss_pred ccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecC---C-CEEEEeeCCCcEEEEEccCCeEEEEEeC
Q 040361 206 IRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVE---L-DIVISGSKDGTCVFHTLREGRYVRSLCH 281 (413)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~---~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 281 (413)
.... .+..+..|..++..++|-+. . ..|+.-....++.+|+..+|+.......
T Consensus 97 ~~~s-----------------------~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~y 153 (1062)
T KOG1912|consen 97 VLAS-----------------------VINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDY 153 (1062)
T ss_pred hhhh-----------------------hhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecccc
Confidence 8876 56677888999999999763 2 3566667788999999999999988876
Q ss_pred CCCCceeeEEEcc-CCcEEEEECCCCeEEEEEeC--------Cceeeee-ecCC-------------------------c
Q 040361 282 PSGSALSKLAASR-HGRIVLYGDDDLSLHLFSIN--------GKHLASS-ESNG-------------------------R 326 (413)
Q Consensus 282 ~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~--------~~~~~~~-~~~~-------------------------~ 326 (413)
.+ ....++.+.| +.+.+..-+..|.+.+-+.- ++.+... .|.. .
T Consensus 154 s~-~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity 232 (1062)
T KOG1912|consen 154 SH-EILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITY 232 (1062)
T ss_pred CC-cceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHH
Confidence 54 3566788888 66667766667777766552 2222211 1111 0
Q ss_pred eeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEccCCe---EEEEcCCCeEEEEEecCCcccccc
Q 040361 327 LNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEEC---FLAGTKDGCLLVYSIENRRTSLPR 403 (413)
Q Consensus 327 i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~dg~i~vw~~~~~~~~~~~ 403 (413)
...++|+|.-+.++.......+.++|++-..++....-..+.+.-+.+-|+++ +++.-.||.+.+|--+.....+++
T Consensus 233 ~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~ 312 (1062)
T KOG1912|consen 233 CAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKK 312 (1062)
T ss_pred HHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccc
Confidence 12357788877666666778899999998888888776777777888899842 557889999999987765444444
No 273
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.30 E-value=3.6e-09 Score=91.23 Aligned_cols=146 Identities=12% Similarity=0.121 Sum_probs=116.9
Q ss_pred CCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCC-cEEEEEeccccccccccccceeec
Q 040361 144 SENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDT-TVMVWEVIRARAPEKRVRNMQIEA 222 (413)
Q Consensus 144 ~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg-~i~iw~~~~~~~~~~~~~~~~~~~ 222 (413)
+|++++.++ -|...|.+...+-.++. +|.+.|.-..+..+++-++.|..|| .+-++|.++++
T Consensus 331 ~Gd~ia~VS--RGkaFi~~~~~~~~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e------------- 393 (668)
T COG4946 331 NGDYIALVS--RGKAFIMRPWDGYSIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE------------- 393 (668)
T ss_pred CCcEEEEEe--cCcEEEECCCCCeeEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCce-------------
Confidence 567776655 67888877655554433 4777788888888888999999999 89999998886
Q ss_pred CCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEE
Q 040361 223 PRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYG 302 (413)
Q Consensus 223 ~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 302 (413)
+..+...-+.|.++..+++|++++.+.....+.+.|+.++..... ......-|..+.|+|+++++|.+
T Consensus 394 -----------~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~i-dkS~~~lItdf~~~~nsr~iAYa 461 (668)
T COG4946 394 -----------VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLI-DKSEYGLITDFDWHPNSRWIAYA 461 (668)
T ss_pred -----------EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEe-cccccceeEEEEEcCCceeEEEe
Confidence 566777788999999999999999999999999999999876543 33334579999999999999998
Q ss_pred CCCC----eEEEEEeCCcee
Q 040361 303 DDDL----SLHLFSINGKHL 318 (413)
Q Consensus 303 ~~d~----~i~i~d~~~~~~ 318 (413)
--+| .|++||+.+.++
T Consensus 462 fP~gy~tq~Iklydm~~~Ki 481 (668)
T COG4946 462 FPEGYYTQSIKLYDMDGGKI 481 (668)
T ss_pred cCcceeeeeEEEEecCCCeE
Confidence 7665 689999986443
No 274
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.28 E-value=3.3e-08 Score=97.51 Aligned_cols=323 Identities=9% Similarity=0.093 Sum_probs=200.6
Q ss_pred EEEEecCCCCCCeEEEEeecCCcEEEE----ecCceEEEEEe-------eccCCCCCCceeeecCCCCccccCCCcC---
Q 040361 52 TSIICSTRHQPSGIVYVGMLDSSIVLV----NQGLTLSVKMW-------LTTQLQSGGNFTFSGSQDPFFGVGADIL--- 117 (413)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-------~~~~~s~~~~~l~~~~~d~~~~~~~~~~--- 117 (413)
..+....+.+....+++...+|.++++ +.+ ...+.+. ....+|||+..++....++.+.+-...|
T Consensus 76 ~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~-~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i 154 (928)
T PF04762_consen 76 DKIVSFQYLADSESLCIALASGDIILVREDPDPD-EDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPI 154 (928)
T ss_pred CcEEEEEeccCCCcEEEEECCceEEEEEccCCCC-CceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEE
Confidence 456666788888889999999999999 322 2222222 2336899999988777666544322222
Q ss_pred --------------------CCcccC--------------CCC-----cccceecceeEEEEecCCCCEEEEeec--CC-
Q 040361 118 --------------------SPRNVG--------------SPL-----AESFELGSQCFTTMQTPSENFLITCGN--WE- 155 (413)
Q Consensus 118 --------------------~~~~~~--------------~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~g~--~d- 155 (413)
..+..+ .+. ...+..+.....+.|-.||.+++++.- ..
T Consensus 155 ~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~ 234 (928)
T PF04762_consen 155 SEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETG 234 (928)
T ss_pred EEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCC
Confidence 111100 000 011224456778899999999988654 22
Q ss_pred --CeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccC---CCcEEEEEeccccccccccccceeecCCCceeee
Q 040361 156 --NSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSY---DTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIV 230 (413)
Q Consensus 156 --~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (413)
..++||+-+ |....+-+.-.+--.+++|.|.|++|++.-. ...|.+|.-..-+.. +
T Consensus 235 ~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhg-----e------------- 295 (928)
T PF04762_consen 235 SRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHG-----E------------- 295 (928)
T ss_pred ceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEee-----e-------------
Confidence 489999865 6655444433344457899999999998764 344556654322200 0
Q ss_pred cCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeE--EEEEeCCCCCceeeEEEccC-CcEEEEECCCCe
Q 040361 231 ETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRY--VRSLCHPSGSALSKLAASRH-GRIVLYGDDDLS 307 (413)
Q Consensus 231 ~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~ 307 (413)
-...+......|..+.|++++..|+....|. |.+|-..+..- .+.+.......+..+.|+|. ...|.+.+.++.
T Consensus 296 --F~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~ 372 (928)
T PF04762_consen 296 --FTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQ 372 (928)
T ss_pred --EecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCc
Confidence 0111123456789999999999999877665 99999887763 33344443445566999994 455666666566
Q ss_pred EEEEEeC---------------------Cceee----------------eeecCCceeEEEecCCCCEEEEeCCCCeEEE
Q 040361 308 LHLFSIN---------------------GKHLA----------------SSESNGRLNCLELSACGQFLVCGGDQGQIVV 350 (413)
Q Consensus 308 i~i~d~~---------------------~~~~~----------------~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v 350 (413)
+..++.. |..+. ......+|.+++|++++..+++-..||.|.+
T Consensus 373 ~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~ 452 (928)
T PF04762_consen 373 YEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSI 452 (928)
T ss_pred EEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEE
Confidence 6554431 11111 1134467999999999988999999999999
Q ss_pred EECCCCce--------EEEec----------CCCCcEEEEEEccCCeEEE-EcC---CCeEEEEEecCC
Q 040361 351 RSMNSLEV--------VRRYS----------GVGKIITSLAVTPEECFLA-GTK---DGCLLVYSIENR 397 (413)
Q Consensus 351 ~d~~~~~~--------~~~~~----------~~~~~v~~~~~~~~~~~l~-~~~---dg~i~vw~~~~~ 397 (413)
|....... ...+. .....+..++|..+..+++ ... ...+.++++...
T Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 521 (928)
T PF04762_consen 453 YEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDS 521 (928)
T ss_pred EEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccC
Confidence 98543211 11111 1234578888888876554 322 367888888544
No 275
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.28 E-value=4.3e-09 Score=95.24 Aligned_cols=233 Identities=14% Similarity=0.128 Sum_probs=140.8
Q ss_pred CCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecC
Q 040361 144 SENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAP 223 (413)
Q Consensus 144 ~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 223 (413)
++..+++ ++.++.++.+|..+|+.+...... +.+.+.... .+..++.++.+|.+..||.++++..++....
T Consensus 104 ~~~~v~v-~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~------ 174 (377)
T TIGR03300 104 DGGLVFV-GTEKGEVIALDAEDGKELWRAKLS-SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRV------ 174 (377)
T ss_pred cCCEEEE-EcCCCEEEEEECCCCcEeeeeccC-ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccC------
Confidence 3555555 555999999999999998766533 222211111 3456777788999999999888732211000
Q ss_pred CCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCC---ce---eeEEEcc--C
Q 040361 224 RKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGS---AL---SKLAASR--H 295 (413)
Q Consensus 224 ~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~---~v---~~~~~~~--~ 295 (413)
.+...+..... .... + ..++.+..++.+..+|+++|+.+.+....... .+ ..+.-+| .
T Consensus 175 --------~~~~~~~~~~s----p~~~-~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~ 240 (377)
T TIGR03300 175 --------TPALTLRGSAS----PVIA-D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVD 240 (377)
T ss_pred --------CCceeecCCCC----CEEE-C-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEE
Confidence 00000001111 1111 2 46778888999999999999887654321110 00 0011111 3
Q ss_pred CcEEEEECCCCeEEEEEeC-CceeeeeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCC-cEEEEE
Q 040361 296 GRIVLYGDDDLSLHLFSIN-GKHLASSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGK-IITSLA 373 (413)
Q Consensus 296 ~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~-~v~~~~ 373 (413)
+..+++++.++.++.||.+ ++.+....... ..... ..+..+++++.+|.++.+|..+++.+........ ...+..
T Consensus 241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~-~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~ 317 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLRSGRVLWKRDASS-YQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPA 317 (377)
T ss_pred CCEEEEEEcCCEEEEEECCCCcEEEeeccCC-ccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCE
Confidence 5577778889999999997 44443333211 12222 2567888888999999999999988766532221 222222
Q ss_pred EccCCeEEEEcCCCeEEEEEecCCcccccc
Q 040361 374 VTPEECFLAGTKDGCLLVYSIENRRTSLPR 403 (413)
Q Consensus 374 ~~~~~~~l~~~~dg~i~vw~~~~~~~~~~~ 403 (413)
.. ++.+++++.+|.|+++|.++++.....
T Consensus 318 i~-g~~l~~~~~~G~l~~~d~~tG~~~~~~ 346 (377)
T TIGR03300 318 VV-GGYLVVGDFEGYLHWLSREDGSFVARL 346 (377)
T ss_pred EE-CCEEEEEeCCCEEEEEECCCCCEEEEE
Confidence 32 467778999999999999988766433
No 276
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.24 E-value=2.1e-08 Score=90.82 Aligned_cols=210 Identities=9% Similarity=0.064 Sum_probs=128.4
Q ss_pred eEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCE-EEEccC---CCcEEEEEeccccccccccccceeecCCCceeeecC
Q 040361 157 SFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSI-LATGSY---DTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVET 232 (413)
Q Consensus 157 ~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~s~s~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (413)
.|.+-|.+... .+.+... +.+....|+|||+. ++..+. +..|.++|+.+++
T Consensus 170 ~l~~~d~dg~~-~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~----------------------- 224 (419)
T PRK04043 170 NIVLADYTLTY-QKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGK----------------------- 224 (419)
T ss_pred eEEEECCCCCc-eeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCc-----------------------
Confidence 55555553333 3333333 37778999999985 554433 3458888887765
Q ss_pred ceeeeecCCCCeEEEEEecCCCEEE-EeeCC--CcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECC-CC--
Q 040361 233 PFHILCGHDDIITCLYVSVELDIVI-SGSKD--GTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDD-DL-- 306 (413)
Q Consensus 233 ~~~~~~~h~~~i~~~~~~~~~~~l~-s~~~d--g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~-- 306 (413)
...+....+......|+||++.++ +.+.+ ..|.++|+..+... .+..... ......|+|||+.|+..+. .+
T Consensus 225 -~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~-~d~~p~~SPDG~~I~F~Sdr~g~~ 301 (419)
T PRK04043 225 -KEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPG-IDVNGNFVEDDKRIVFVSDRLGYP 301 (419)
T ss_pred -EEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEE-EcccCCC-ccCccEECCCCCEEEEEECCCCCc
Confidence 233333455566788999998665 34333 46888888777643 3432221 2345689999987776653 23
Q ss_pred eEEEEEeCCceeeeeecCCceeEEEecCCCCEEEEeCCC---------CeEEEEECCCCceEEEecCCCCcEEEEEEccC
Q 040361 307 SLHLFSINGKHLASSESNGRLNCLELSACGQFLVCGGDQ---------GQIVVRSMNSLEVVRRYSGVGKIITSLAVTPE 377 (413)
Q Consensus 307 ~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---------g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~ 377 (413)
.|+++|+.+.........+.. ...|+|||++++..... ..|.+.|+.+++. ..+... .......|+||
T Consensus 302 ~Iy~~dl~~g~~~rlt~~g~~-~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPD 378 (419)
T PRK04043 302 NIFMKKLNSGSVEQVVFHGKN-NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSD 378 (419)
T ss_pred eEEEEECCCCCeEeCccCCCc-CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCC
Confidence 678888875444332222211 24899999988766543 3688889888764 344432 23345889999
Q ss_pred CeEEE--Ec--CCCeEEEEEecCC
Q 040361 378 ECFLA--GT--KDGCLLVYSIENR 397 (413)
Q Consensus 378 ~~~l~--~~--~dg~i~vw~~~~~ 397 (413)
|+.++ .. ....|.+.+++..
T Consensus 379 G~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 379 GGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred CCEEEEEEccCCcEEEEEEecCCC
Confidence 87553 22 2334777777664
No 277
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.24 E-value=2.4e-10 Score=96.28 Aligned_cols=156 Identities=17% Similarity=0.244 Sum_probs=114.0
Q ss_pred eEEEEEecCCCEEEEeeCCCcEEEEEccCCe----EEEEEeCCCCCceeeEEEccCCcEEEEECCC---CeEEEEEeC-C
Q 040361 244 ITCLYVSVELDIVISGSKDGTCVFHTLREGR----YVRSLCHPSGSALSKLAASRHGRIVLYGDDD---LSLHLFSIN-G 315 (413)
Q Consensus 244 i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~i~d~~-~ 315 (413)
...+..++++++++.+..+....+++++... .......+. ..+.+.+..+.....++... ..+.+|... +
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~--~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPK--RPTAISFIREDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeeccc--CcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence 3445567788888888888887777765433 222333322 33445555554444444433 445555544 5
Q ss_pred ceeeeeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEec-CCCCcEEEEEEccCCeEEEEcCCCeEEEEEe
Q 040361 316 KHLASSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYS-GVGKIITSLAVTPEECFLAGTKDGCLLVYSI 394 (413)
Q Consensus 316 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~dg~i~vw~~ 394 (413)
......+|-..++.++++||++++++++.|..|+|-.......+..+. ||..-|..++..++..+++++.|++|++||+
T Consensus 143 ~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~ 222 (390)
T KOG3914|consen 143 RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDI 222 (390)
T ss_pred CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceeeecCCCCcEEEEec
Confidence 555567888999999999999999999999999998877666666665 7999999999998877889999999999999
Q ss_pred cCCcccc
Q 040361 395 ENRRTSL 401 (413)
Q Consensus 395 ~~~~~~~ 401 (413)
.+++..-
T Consensus 223 ~sgk~L~ 229 (390)
T KOG3914|consen 223 TSGKLLD 229 (390)
T ss_pred ccCCccc
Confidence 9998763
No 278
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=2.7e-09 Score=93.58 Aligned_cols=269 Identities=12% Similarity=0.112 Sum_probs=179.4
Q ss_pred CCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecC----------CCeEEEEE
Q 040361 93 QLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNW----------ENSFQVIA 162 (413)
Q Consensus 93 ~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~----------d~~i~i~~ 162 (413)
.+||-|.+|++-+..|... |........ +.+ .|..+..+.|||..++|+..+.. ...++|||
T Consensus 217 ~wSP~GTYL~t~Hk~GI~l-----WGG~~f~r~--~RF-~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWD 288 (698)
T KOG2314|consen 217 RWSPKGTYLVTFHKQGIAL-----WGGESFDRI--QRF-YHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWD 288 (698)
T ss_pred EecCCceEEEEEeccceee-----ecCccHHHH--Hhc-cCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEE
Confidence 5799999999999988765 333322211 111 15667778899999999986542 24899999
Q ss_pred cCCCcEEEEeecC--CC-eEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeec
Q 040361 163 LNDGRVVQSIRQH--RD-VVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCG 239 (413)
Q Consensus 163 ~~~~~~~~~~~~h--~~-~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (413)
+.+|...+.+..- .. .-.-+.||.|++++|--.. .+|.||+...-. ++..-.-
T Consensus 289 I~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~-----------------------lld~Ksl 344 (698)
T KOG2314|consen 289 IATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFM-----------------------LLDKKSL 344 (698)
T ss_pred ccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCcee-----------------------eeccccc
Confidence 9999988877642 22 2234679999999987666 568899875432 1111111
Q ss_pred CCCCeEEEEEecCCCEEEEeeC-----CCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECC-------C--
Q 040361 240 HDDIITCLYVSVELDIVISGSK-----DGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDD-------D-- 305 (413)
Q Consensus 240 h~~~i~~~~~~~~~~~l~s~~~-----dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------d-- 305 (413)
.-..|....|+|.+++||--.. -..+.+-.+.+++.+++-...+ ..=..+.|-.+|.+|++--. .
T Consensus 345 ki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfn-VsDckLhWQk~gdyLcvkvdR~tK~~~~g~ 423 (698)
T KOG2314|consen 345 KISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFN-VSDCKLHWQKSGDYLCVKVDRHTKSKVKGQ 423 (698)
T ss_pred CCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeecccee-eeccEEEeccCCcEEEEEEEeeccccccce
Confidence 2356778889998887774332 2357777777887777665442 22345677788888876321 1
Q ss_pred -CeEEEEEeCCcee--eeeecCCceeEEEecCCCCEEEEeCC---CCeEEEEECCC----CceEEEecCCCCcEEEEEEc
Q 040361 306 -LSLHLFSINGKHL--ASSESNGRLNCLELSACGQFLVCGGD---QGQIVVRSMNS----LEVVRRYSGVGKIITSLAVT 375 (413)
Q Consensus 306 -~~i~i~d~~~~~~--~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~i~v~d~~~----~~~~~~~~~~~~~v~~~~~~ 375 (413)
..+.|+.++.+.+ ........+...+|-|.|+.+++-+. ..++.+|.+.+ .+++..+. ....+.+.|+
T Consensus 424 f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfws 501 (698)
T KOG2314|consen 424 FSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWS 501 (698)
T ss_pred EeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEc
Confidence 1355666654433 33566788999999999987665432 35788898773 23444443 3557889999
Q ss_pred cCCeEEE----EcCCCeEEEEEecC
Q 040361 376 PEECFLA----GTKDGCLLVYSIEN 396 (413)
Q Consensus 376 ~~~~~l~----~~~dg~i~vw~~~~ 396 (413)
|.|++++ +|..|.+.++|..-
T Consensus 502 PkG~fvvva~l~s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 502 PKGRFVVVAALVSRRGDLEFYDTDY 526 (698)
T ss_pred CCCcEEEEEEecccccceEEEecch
Confidence 9998774 55789999999874
No 279
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.22 E-value=1.6e-09 Score=88.38 Aligned_cols=258 Identities=10% Similarity=0.186 Sum_probs=162.3
Q ss_pred cceeEEEEecCCCCEEEEeecCCCeEEEEEcCCC-----cEEEEeecCC------------CeEEEEEECCCC--CEEEE
Q 040361 133 GSQCFTTMQTPSENFLITCGNWENSFQVIALNDG-----RVVQSIRQHR------------DVVSCVAVTTDG--SILAT 193 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~-----~~~~~~~~h~------------~~v~~~~~~~~~--~~l~s 193 (413)
...+.++.|...|.+++ +|...|.|.+|.-+.. +....+++|. ..|..+.|..++ ..++.
T Consensus 26 ad~ItaVefd~tg~Yla-tGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 26 ADKITAVEFDETGLYLA-TGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred cceeeEEEeccccceEe-ecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 34566777777777665 4876799999975432 2223445554 357788887653 34666
Q ss_pred ccCCCcEEEEEecccccccc------------------cccccee-ecCCCceeeecCceeee-ecCCCCeEEEEEecCC
Q 040361 194 GSYDTTVMVWEVIRARAPEK------------------RVRNMQI-EAPRKDYVIVETPFHIL-CGHDDIITCLYVSVEL 253 (413)
Q Consensus 194 ~s~dg~i~iw~~~~~~~~~~------------------~~~~~~~-~~~~~~~~~~~~~~~~~-~~h~~~i~~~~~~~~~ 253 (413)
.+.|.+|++|.+........ ....+.. .....+.++...+.+.. ..|..-|.++.|+.|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 67899999999976631110 0001111 11122333334444444 6788999999999998
Q ss_pred CEEEEeeCCCcEEEEEccCCeE---EEEEeCCCC----CceeeEEEccC-CcEEEEECCCCeEEEEEeCCceee-----e
Q 040361 254 DIVISGSKDGTCVFHTLREGRY---VRSLCHPSG----SALSKLAASRH-GRIVLYGDDDLSLHLFSINGKHLA-----S 320 (413)
Q Consensus 254 ~~l~s~~~dg~i~vwd~~~~~~---~~~~~~~~~----~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~-----~ 320 (413)
..++++. |-.|.+|++.--.. +..++.+.. ..|++..|+|. ...+...+..|.|++-|++...+- .
T Consensus 185 et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 185 ETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred heeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 8888775 77899999864322 222332211 34778889984 567777888999999999732111 0
Q ss_pred e-------------ecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCC-ceEEEecCCC------------CcE---EE
Q 040361 321 S-------------ESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSL-EVVRRYSGVG------------KII---TS 371 (413)
Q Consensus 321 ~-------------~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~------------~~v---~~ 371 (413)
. ..-..|..+.|+++|+|+++-+. -+|++||.+.. .++.+++-|. +.| -.
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFe 342 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFE 342 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEE
Confidence 0 11246788999999999998765 48999999854 4666664442 222 23
Q ss_pred EEEccCC-eEEEEcCCCeEEEEE
Q 040361 372 LAVTPEE-CFLAGTKDGCLLVYS 393 (413)
Q Consensus 372 ~~~~~~~-~~l~~~~dg~i~vw~ 393 (413)
+.|+.|. .+++|+..+...+|-
T Consensus 343 isfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 343 ISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred EEecCCcccccccccccceeeec
Confidence 5677664 455677666666665
No 280
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.21 E-value=1.5e-08 Score=81.09 Aligned_cols=227 Identities=14% Similarity=0.032 Sum_probs=149.5
Q ss_pred CEEEEeecCCCeEEEEEcCCCcEE-EEeecCCCeEEEEEECC-CCCEEEEccCCCcEEEEEeccccccccccccceeecC
Q 040361 146 NFLITCGNWENSFQVIALNDGRVV-QSIRQHRDVVSCVAVTT-DGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAP 223 (413)
Q Consensus 146 ~~l~~~g~~d~~i~i~~~~~~~~~-~~~~~h~~~v~~~~~~~-~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 223 (413)
.+|++ |+..|...+|...+.+.. +....|...|+-+.=.. ....+..++.|.++++.+++.+..
T Consensus 85 ~~la~-gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~------------- 150 (344)
T KOG4532|consen 85 VTLAD-GGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSN------------- 150 (344)
T ss_pred cEEEe-ccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcc-------------
Confidence 44555 545899999999866544 33333544433222111 223466788899999999876641
Q ss_pred CCceeeecCceeeeecCCC--CeEEEEEecCCCEEEEeeCCCcEEEEEccCC-eEE-EEEeCCCCCceeeEEEccCCcEE
Q 040361 224 RKDYVIVETPFHILCGHDD--IITCLYVSVELDIVISGSKDGTCVFHTLREG-RYV-RSLCHPSGSALSKLAASRHGRIV 299 (413)
Q Consensus 224 ~~~~~~~~~~~~~~~~h~~--~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~-~~~~~~~~~~v~~~~~~~~~~~l 299 (413)
...-|.. .+.+++++++++++++.+....|..|.+... +.+ +....+....=.+..|+.....+
T Consensus 151 ------------~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~F 218 (344)
T KOG4532|consen 151 ------------KFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQF 218 (344)
T ss_pred ------------cceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceE
Confidence 1122333 3788999999999999999999999988643 332 32333333344667899999999
Q ss_pred EEECCCCeEEEEEeCCc--eeee-----eecCCceeEEEecCCC--CEEEEeCCCCeEEEEECCCCceEEEecC------
Q 040361 300 LYGDDDLSLHLFSINGK--HLAS-----SESNGRLNCLELSACG--QFLVCGGDQGQIVVRSMNSLEVVRRYSG------ 364 (413)
Q Consensus 300 ~~~~~d~~i~i~d~~~~--~~~~-----~~~~~~i~~~~~s~~~--~~l~~~~~dg~i~v~d~~~~~~~~~~~~------ 364 (413)
|++..||++.+||++.. .... -.|.+.+..+.|++-| .+|+..-.-+.+.+.|+++++..+.+..
T Consensus 219 Av~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~ 298 (344)
T KOG4532|consen 219 AVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVER 298 (344)
T ss_pred EEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccc
Confidence 99999999999999832 1111 2478999999999876 4666666677899999999876554432
Q ss_pred -CC-CcEEEEEEccCCeEE-EEcCCCeEEEEEecCCcc
Q 040361 365 -VG-KIITSLAVTPEECFL-AGTKDGCLLVYSIENRRT 399 (413)
Q Consensus 365 -~~-~~v~~~~~~~~~~~l-~~~~dg~i~vw~~~~~~~ 399 (413)
|. ..|..-.|+.++.-+ +.++ -.+.-|++.++++
T Consensus 299 ~~~tq~ifgt~f~~~n~s~~v~~e-~~~ae~ni~srsR 335 (344)
T KOG4532|consen 299 KHNTQHIFGTNFNNENESNDVKNE-LQGAEYNILSRSR 335 (344)
T ss_pred cccccccccccccCCCcccccccc-hhhheeeccccce
Confidence 22 236666777664322 3322 3456677766544
No 281
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.20 E-value=1.6e-08 Score=99.71 Aligned_cols=255 Identities=9% Similarity=0.056 Sum_probs=161.5
Q ss_pred cceeEEEEecCCCCEEEEeecCCCeEEEE----EcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEec--
Q 040361 133 GSQCFTTMQTPSENFLITCGNWENSFQVI----ALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVI-- 206 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~g~~d~~i~i~----~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~-- 206 (413)
...++++.|.++...++++-. +|.|.+. +..+.. +...-.-...|.+++||||+..|+..+.++++.+-.-.
T Consensus 75 ~~~ivs~~yl~d~~~l~~~~~-~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd 152 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCIALA-SGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFD 152 (928)
T ss_pred CCcEEEEEeccCCCcEEEEEC-CceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccce
Confidence 567899999999887777444 8999888 443322 22222345789999999999999999988888775321
Q ss_pred --ccccc----ccccccceeecCCCceeee-----------cC------ceeeeecCCCCeEEEEEecCCCEEEEeeC--
Q 040361 207 --RARAP----EKRVRNMQIEAPRKDYVIV-----------ET------PFHILCGHDDIITCLYVSVELDIVISGSK-- 261 (413)
Q Consensus 207 --~~~~~----~~~~~~~~~~~~~~~~~~~-----------~~------~~~~~~~h~~~i~~~~~~~~~~~l~s~~~-- 261 (413)
..... .+..+.+..+-.+++..+- .. ....+. +...-..++|-.||.++|+.+-
T Consensus 153 ~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~ 231 (928)
T PF04762_consen 153 PISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEP 231 (928)
T ss_pred EEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEc
Confidence 11000 0000011111111111110 00 012233 4556678999999999997764
Q ss_pred -C---CcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECC---CCeEEEEEeCCceeeee-----ecCCceeE
Q 040361 262 -D---GTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDD---DLSLHLFSINGKHLASS-----ESNGRLNC 329 (413)
Q Consensus 262 -d---g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~i~d~~~~~~~~~-----~~~~~i~~ 329 (413)
. ..+++|+- .|....+-+ +..+--..++|.|.|++|++... ...|.+|.-+|.+...+ .....+..
T Consensus 232 ~~~~~R~iRVy~R-eG~L~stSE-~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~ 309 (928)
T PF04762_consen 232 ETGSRRVIRVYSR-EGELQSTSE-PVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIE 309 (928)
T ss_pred CCCceeEEEEECC-CceEEeccc-cCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeE
Confidence 2 47899996 466554444 22333457899999999998764 45788888887655443 24567999
Q ss_pred EEecCCCCEEEEeCCCCeEEEEECCCCc--eEEEecC-CCCcEEEEEEccC--CeEEEEcCCCeEEEEE
Q 040361 330 LELSACGQFLVCGGDQGQIVVRSMNSLE--VVRRYSG-VGKIITSLAVTPE--ECFLAGTKDGCLLVYS 393 (413)
Q Consensus 330 ~~~s~~~~~l~~~~~dg~i~v~d~~~~~--~~~~~~~-~~~~v~~~~~~~~--~~~l~~~~dg~i~vw~ 393 (413)
+.|++|+..||+...|. |.+|-..+.. +-+++.- ....+..+.|+|. .++...+.+|.+..++
T Consensus 310 l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~ 377 (928)
T PF04762_consen 310 LAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYD 377 (928)
T ss_pred EEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEE
Confidence 99999999999987665 9999988754 2233331 2334556999997 3455566656665433
No 282
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.20 E-value=1.5e-08 Score=87.42 Aligned_cols=209 Identities=12% Similarity=0.138 Sum_probs=146.9
Q ss_pred cCCCCEEEEeecCCCeEEEEEcCCCcEEEEeec---C-----CCeEEEEE----ECC-CCCEEEEccCCCcEEEEEeccc
Q 040361 142 TPSENFLITCGNWENSFQVIALNDGRVVQSIRQ---H-----RDVVSCVA----VTT-DGSILATGSYDTTVMVWEVIRA 208 (413)
Q Consensus 142 ~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~---h-----~~~v~~~~----~~~-~~~~l~s~s~dg~i~iw~~~~~ 208 (413)
+.+|+.++... .|.|++||.++.+....--+ . ...+.-.. |++ +|.+++..|. |...+.+...+
T Consensus 275 nsDGkrIvFq~--~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~ 351 (668)
T COG4946 275 NSDGKRIVFQN--AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDG 351 (668)
T ss_pred CCCCcEEEEec--CCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCC
Confidence 56788888754 68899999876544321111 0 01111111 332 6888888876 55666554333
Q ss_pred cccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCC-cEEEEEccCCeEEEEEeCCCCCce
Q 040361 209 RAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDG-TCVFHTLREGRYVRSLCHPSGSAL 287 (413)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg-~i~vwd~~~~~~~~~~~~~~~~~v 287 (413)
- ..--+|.+.|.-..+..+.+-++.|..|| .+-++|.++++..+... . -..|
T Consensus 352 ~-------------------------~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~-~-lg~I 404 (668)
T COG4946 352 Y-------------------------SIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEK-D-LGNI 404 (668)
T ss_pred e-------------------------eEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeC-C-ccce
Confidence 2 22236777788888888888899999999 89999998877554443 3 2478
Q ss_pred eeEEEccCCcEEEEECCCCeEEEEEeCCceeee--eecCCceeEEEecCCCCEEEEeCCCC----eEEEEECCCCceEEE
Q 040361 288 SKLAASRHGRIVLYGDDDLSLHLFSINGKHLAS--SESNGRLNCLELSACGQFLVCGGDQG----QIVVRSMNSLEVVRR 361 (413)
Q Consensus 288 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~--~~~~~~i~~~~~s~~~~~l~~~~~dg----~i~v~d~~~~~~~~~ 361 (413)
.++..+++|+.++++.....|.++|+++..... ....+-|+...|+|+++++|-+--+| .|++||+..++....
T Consensus 405 ~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~v 484 (668)
T COG4946 405 EAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDV 484 (668)
T ss_pred EEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEe
Confidence 999999999999999999999999998544443 45667899999999999999887665 699999998876643
Q ss_pred ecCCCCcEEEEEEccCCeEE
Q 040361 362 YSGVGKIITSLAVTPEECFL 381 (413)
Q Consensus 362 ~~~~~~~v~~~~~~~~~~~l 381 (413)
-. ..+.=.+-+|.||+++|
T Consensus 485 TT-~ta~DfsPaFD~d~ryL 503 (668)
T COG4946 485 TT-PTAYDFSPAFDPDGRYL 503 (668)
T ss_pred cC-CcccccCcccCCCCcEE
Confidence 32 33333456899998644
No 283
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.19 E-value=7.4e-10 Score=90.26 Aligned_cols=209 Identities=12% Similarity=0.226 Sum_probs=140.5
Q ss_pred CCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecC------------CC
Q 040361 175 HRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGH------------DD 242 (413)
Q Consensus 175 h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h------------~~ 242 (413)
..+.|+++.|...|.+|++|...|.|.+|.-+.....+... ...+++| ..
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf------------------~teFQshe~EFDYLkSleieE 86 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKF------------------FTEFQSHELEFDYLKSLEIEE 86 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhh------------------hhhhcccccchhhhhhccHHH
Confidence 34678999999999999999999999999876554222211 1122333 34
Q ss_pred CeEEEEEecCCC--EEEEeeCCCcEEEEEccCCeEE------------------------------------------EE
Q 040361 243 IITCLYVSVELD--IVISGSKDGTCVFHTLREGRYV------------------------------------------RS 278 (413)
Q Consensus 243 ~i~~~~~~~~~~--~l~s~~~dg~i~vwd~~~~~~~------------------------------------------~~ 278 (413)
.|..+.|..++. .++..+.|.+|++|.+...... +.
T Consensus 87 Kin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rv 166 (460)
T COG5170 87 KINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRV 166 (460)
T ss_pred HhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEecccee
Confidence 577888876543 5667778999999987643110 00
Q ss_pred EeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeC--Cceeee---eec-----CCceeEEEecCCC-CEEEEeCCCCe
Q 040361 279 LCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSIN--GKHLAS---SES-----NGRLNCLELSACG-QFLVCGGDQGQ 347 (413)
Q Consensus 279 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~---~~~-----~~~i~~~~~s~~~-~~l~~~~~dg~ 347 (413)
....+...++++.++.+...++++. |-.|.+|+++ ...... ..+ ..-|++..|+|.. ..+...+..|.
T Consensus 167 yaNaH~yhiNSiS~NsD~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~ 245 (460)
T COG5170 167 YANAHPYHINSISFNSDKETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGE 245 (460)
T ss_pred ccccceeEeeeeeecCchheeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCc
Confidence 1111233567888888877776654 5689999987 222211 112 2457888999974 56777888999
Q ss_pred EEEEECCCCceE------E--E--------ecCCCCcEEEEEEccCCeEEEEcCCCeEEEEEecCCccccc
Q 040361 348 IVVRSMNSLEVV------R--R--------YSGVGKIITSLAVTPEECFLAGTKDGCLLVYSIENRRTSLP 402 (413)
Q Consensus 348 i~v~d~~~~~~~------~--~--------~~~~~~~v~~~~~~~~~~~l~~~~dg~i~vw~~~~~~~~~~ 402 (413)
|++-|++...+. . . +..-...|..+.|+++|+++.+-.=-+|++||+...+.+..
T Consensus 246 Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pik 316 (460)
T COG5170 246 IKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIK 316 (460)
T ss_pred EEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCce
Confidence 999999842211 1 1 11223578899999999999877778999999998776643
No 284
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.16 E-value=6.3e-07 Score=75.91 Aligned_cols=210 Identities=17% Similarity=0.116 Sum_probs=138.7
Q ss_pred EEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEEC-CCCCEEEEccCCCcEEEEEeccccccccccc
Q 040361 138 TTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVT-TDGSILATGSYDTTVMVWEVIRARAPEKRVR 216 (413)
Q Consensus 138 ~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~ 216 (413)
..+|.+.+..|..+....+.|+.|+..+++... +.... ...+++. +++. |+.+..+ .+.++|..+++.
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~-l~v~~~~-~~~~~d~~~g~~------ 72 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGR-LYVADSG-GIAVVDPDTGKV------ 72 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSE-EEEEETT-CEEEEETTTTEE------
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCE-EEEEEcC-ceEEEecCCCcE------
Confidence 345677666777767778999999998776543 32222 6667777 6655 4444444 456668777641
Q ss_pred cceeecCCCceeeecCceeeee--c-CCCCeEEEEEecCCCEEEEeeCC--------CcEEEEEccCCeEEEEEeCCCCC
Q 040361 217 NMQIEAPRKDYVIVETPFHILC--G-HDDIITCLYVSVELDIVISGSKD--------GTCVFHTLREGRYVRSLCHPSGS 285 (413)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~--~-h~~~i~~~~~~~~~~~l~s~~~d--------g~i~vwd~~~~~~~~~~~~~~~~ 285 (413)
+.+.... . .....+.+++.++|++.++.... |.|..++.. ++....... -.
T Consensus 73 ---------------~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~--~~ 134 (246)
T PF08450_consen 73 ---------------TVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG--LG 134 (246)
T ss_dssp ---------------EEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE--ES
T ss_pred ---------------EEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC--cc
Confidence 0122221 1 33467899999999977776543 557777776 554433332 23
Q ss_pred ceeeEEEccCCcEEE-EECCCCeEEEEEeC--Cceee----ee--ec-CCceeEEEecCCCCEEEEeCCCCeEEEEECCC
Q 040361 286 ALSKLAASRHGRIVL-YGDDDLSLHLFSIN--GKHLA----SS--ES-NGRLNCLELSACGQFLVCGGDQGQIVVRSMNS 355 (413)
Q Consensus 286 ~v~~~~~~~~~~~l~-~~~~d~~i~i~d~~--~~~~~----~~--~~-~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~ 355 (413)
..+.++|+|+++.|+ +-+..+.|..|+++ +..+. .. .. .+..-.+++..+|++.++....+.|.++|..
T Consensus 135 ~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~- 213 (246)
T PF08450_consen 135 FPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD- 213 (246)
T ss_dssp SEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-
T ss_pred cccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-
Confidence 578899999998765 66778899999996 32121 11 11 2347889999999988888888999999988
Q ss_pred CceEEEecCCCCcEEEEEEc-cC
Q 040361 356 LEVVRRYSGVGKIITSLAVT-PE 377 (413)
Q Consensus 356 ~~~~~~~~~~~~~v~~~~~~-~~ 377 (413)
++.+..+......+++++|. ++
T Consensus 214 G~~~~~i~~p~~~~t~~~fgg~~ 236 (246)
T PF08450_consen 214 GKLLREIELPVPRPTNCAFGGPD 236 (246)
T ss_dssp SCEEEEEE-SSSSEEEEEEESTT
T ss_pred ccEEEEEcCCCCCEEEEEEECCC
Confidence 88888887665689999994 45
No 285
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.15 E-value=2.4e-08 Score=84.22 Aligned_cols=216 Identities=17% Similarity=0.157 Sum_probs=134.4
Q ss_pred CCeEEEEEcCCCcEEEEeecC--CCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecC
Q 040361 155 ENSFQVIALNDGRVVQSIRQH--RDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVET 232 (413)
Q Consensus 155 d~~i~i~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (413)
+|.|..||..+|+.+.....- .....+... +++..+++++.++.+..||..+++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~l~~~d~~tG~~---------------------- 58 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAV-PDGGRVYVASGDGNLYALDAKTGKV---------------------- 58 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-EETTEEEEEETTSEEEEEETTTSEE----------------------
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEE-EeCCEEEEEcCCCEEEEEECCCCCE----------------------
Confidence 689999999999999887531 122222122 3566788888999999999988872
Q ss_pred ceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEE-eCCC-CC-ceeeEEEccCCcEEEEECCCCeEE
Q 040361 233 PFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSL-CHPS-GS-ALSKLAASRHGRIVLYGDDDLSLH 309 (413)
Q Consensus 233 ~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~-~~-~v~~~~~~~~~~~l~~~~~d~~i~ 309 (413)
+..... ...+.... ...+..++.++.++.+..+|..+|+.+... .... .. ..........+..++++..++.|.
T Consensus 59 -~W~~~~-~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 135 (238)
T PF13360_consen 59 -LWRFDL-PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLV 135 (238)
T ss_dssp -EEEEEC-SSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEE
T ss_pred -EEEeec-ccccccee-eecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEE
Confidence 222222 12111111 223456666778889999999999999884 3221 11 112223333477888888899999
Q ss_pred EEEeC-CceeeeeecCC-c----------e-eEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEcc
Q 040361 310 LFSIN-GKHLASSESNG-R----------L-NCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTP 376 (413)
Q Consensus 310 i~d~~-~~~~~~~~~~~-~----------i-~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~ 376 (413)
.+|++ |+.+....... . + ..+.+. ++ .++.++.++.+.-+|+.+++.+.... ...+..+....
T Consensus 136 ~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~~~~~~ 211 (238)
T PF13360_consen 136 ALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYSLPSVD 211 (238)
T ss_dssp EEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECECEECC
T ss_pred EEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccCCceee
Confidence 99988 55544432211 1 1 223333 44 77777777754444999998765333 23344323344
Q ss_pred CCeEEEEcCCCeEEEEEecCCccc
Q 040361 377 EECFLAGTKDGCLLVYSIENRRTS 400 (413)
Q Consensus 377 ~~~~l~~~~dg~i~vw~~~~~~~~ 400 (413)
++.++.++.++.|..||+++++..
T Consensus 212 ~~~l~~~~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 212 GGTLYVTSSDGRLYALDLKTGKVV 235 (238)
T ss_dssp CTEEEEEETTTEEEEEETTTTEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEE
Confidence 466666668999999999999754
No 286
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.14 E-value=5.7e-07 Score=75.53 Aligned_cols=234 Identities=14% Similarity=0.138 Sum_probs=156.9
Q ss_pred eeEEEEecCCCCEEEEeecCCC-eEEEEEcCCCcEEEEeecCCCeE--EEEEECCCCCEEEEcc-----CCCcEEEEEec
Q 040361 135 QCFTTMQTPSENFLITCGNWEN-SFQVIALNDGRVVQSIRQHRDVV--SCVAVTTDGSILATGS-----YDTTVMVWEVI 206 (413)
Q Consensus 135 ~~~~~~~~~~~~~l~~~g~~d~-~i~i~~~~~~~~~~~~~~h~~~v--~~~~~~~~~~~l~s~s-----~dg~i~iw~~~ 206 (413)
.+..++.+|.....++.+..-| ...+||..+++....+....+.- -.-.|++||++|++.- ..|.|-|||..
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 3456677887777777676666 57789999999887765322221 1356999999999864 35889999998
Q ss_pred cccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEee------------------CCCcEEEE
Q 040361 207 RARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGS------------------KDGTCVFH 268 (413)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~------------------~dg~i~vw 268 (413)
.+- ..+..+..|.-.-..+.+.||++.|+.+. .+-.+.+.
T Consensus 86 ~~~----------------------~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~l 143 (305)
T PF07433_consen 86 RGY----------------------RRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYL 143 (305)
T ss_pred CCc----------------------EEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEE
Confidence 332 13555666666666788889987776653 12356666
Q ss_pred EccCCeEEEEEeC---CCCCceeeEEEccCCcEEEEECCCC-------eEEEEEeCCceeee-------eecCCceeEEE
Q 040361 269 TLREGRYVRSLCH---PSGSALSKLAASRHGRIVLYGDDDL-------SLHLFSINGKHLAS-------SESNGRLNCLE 331 (413)
Q Consensus 269 d~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~-------~i~i~d~~~~~~~~-------~~~~~~i~~~~ 331 (413)
|..+|+.+.+... .+...+..+++.++|..++..-..+ -|.+++..+..... ....+.+-+++
T Consensus 144 d~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa 223 (305)
T PF07433_consen 144 DARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIA 223 (305)
T ss_pred ecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEE
Confidence 7788888777543 2345799999999987766654333 24444433321111 13457789999
Q ss_pred ecCCCCEEEEeC-CCCeEEEEECCCCceEEEecCCCCcEEEEEEccCCeEEEEcCCCeEEEEE
Q 040361 332 LSACGQFLVCGG-DQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFLAGTKDGCLLVYS 393 (413)
Q Consensus 332 ~s~~~~~l~~~~-~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~dg~i~vw~ 393 (413)
+++++.++++.+ ..|.+.+||..+++.+....- ..+..++-.+++ |++.+..|.+....
T Consensus 224 ~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l--~D~cGva~~~~~-f~~ssG~G~~~~~~ 283 (305)
T PF07433_consen 224 ADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL--PDACGVAPTDDG-FLVSSGQGQLIRLS 283 (305)
T ss_pred EeCCCCEEEEECCCCCEEEEEECCCCCEeecccc--CceeeeeecCCc-eEEeCCCccEEEcc
Confidence 999998886665 567899999999999877653 346777777777 66555556544333
No 287
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.13 E-value=3.6e-08 Score=78.97 Aligned_cols=216 Identities=9% Similarity=-0.035 Sum_probs=142.1
Q ss_pred CCeEEEEEcCCCc--EEEEeecCCCeEEEEEECC-----CCCEEEEccCCCcEEEEEeccccccccccccceeecCCCce
Q 040361 155 ENSFQVIALNDGR--VVQSIRQHRDVVSCVAVTT-----DGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDY 227 (413)
Q Consensus 155 d~~i~i~~~~~~~--~~~~~~~h~~~v~~~~~~~-----~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 227 (413)
...+-+|++-+.. .++..+ .+.|.| .-.+|+.|+..|...+|...+.+.
T Consensus 51 t~sv~i~~~y~N~~~iv~~y~-------g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~----------------- 106 (344)
T KOG4532|consen 51 TISVPINSHYSNPKGIVEFYT-------GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDG----------------- 106 (344)
T ss_pred eeeeEeccccCCchhhEEeee-------cccccchHhhccccEEEeccccceeeeecccCccc-----------------
Confidence 4456677765433 333332 345554 345899999999999999987662
Q ss_pred eeecCceeeeecCCCCeEEEEE-ecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCC
Q 040361 228 VIVETPFHILCGHDDIITCLYV-SVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDL 306 (413)
Q Consensus 228 ~~~~~~~~~~~~h~~~i~~~~~-~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 306 (413)
..+....|...|+-+.= .-....+..++.|.++++.++.-+........+ ...+.+++++++++++++.+...
T Consensus 107 -----h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~-~~~~ns~~~snd~~~~~~Vgds~ 180 (344)
T KOG4532|consen 107 -----HLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQ-NLTQNSLHYSNDPSWGSSVGDSR 180 (344)
T ss_pred -----ceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecc-ccceeeeEEcCCCceEEEecCCC
Confidence 22333334443322111 111124566778888888887544333222222 13478899999999999999999
Q ss_pred eEEEEEeC--Cceeee---eecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceE-----EEecCCCCcEEEEEEcc
Q 040361 307 SLHLFSIN--GKHLAS---SESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVV-----RRYSGVGKIITSLAVTP 376 (413)
Q Consensus 307 ~i~i~d~~--~~~~~~---~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~-----~~~~~~~~~v~~~~~~~ 376 (413)
.|..|.+. +..+.. ......-.+.+|+.....+|++..||.+.|||++..... .+-+.|.+.+..+.|++
T Consensus 181 ~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl 260 (344)
T KOG4532|consen 181 RVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSL 260 (344)
T ss_pred cceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecC
Confidence 99999987 333322 223344567889999999999999999999999864322 22235889999999998
Q ss_pred CCe--EE-EEcCCCeEEEEEecCCccc
Q 040361 377 EEC--FL-AGTKDGCLLVYSIENRRTS 400 (413)
Q Consensus 377 ~~~--~l-~~~~dg~i~vw~~~~~~~~ 400 (413)
.|. +| -.-.=+.+.+-|+++.+..
T Consensus 261 ~g~lDLLf~sEhfs~~hv~D~R~~~~~ 287 (344)
T KOG4532|consen 261 YGLLDLLFISEHFSRVHVVDTRNYVNH 287 (344)
T ss_pred CCcceEEEEecCcceEEEEEcccCcee
Confidence 652 33 3445578899999987654
No 288
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.12 E-value=3.7e-07 Score=74.32 Aligned_cols=234 Identities=13% Similarity=0.106 Sum_probs=133.8
Q ss_pred EecCCCCEEEEeecCCCeEEEEEcCCC--cEEEEeec---CCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccc
Q 040361 140 MQTPSENFLITCGNWENSFQVIALNDG--RVVQSIRQ---HRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKR 214 (413)
Q Consensus 140 ~~~~~~~~l~~~g~~d~~i~i~~~~~~--~~~~~~~~---h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~ 214 (413)
+.+++|+.|++.- |..|.|-...+. ..+.+.+. ....=..++|+||+..||.+...|+|+++|+.......
T Consensus 4 ~~~~~Gk~lAi~q--d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~-- 79 (282)
T PF15492_consen 4 ALSSDGKLLAILQ--DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFV-- 79 (282)
T ss_pred eecCCCcEEEEEe--ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEE--
Confidence 3466787777755 788888766542 23333332 23345789999999999999999999999997543100
Q ss_pred cccceeecCCCceeeecCceeeeecCCCCeEEEEEecCC------CEEEEeeCCCcEEEEEccC-----CeEEEEEe--C
Q 040361 215 VRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVEL------DIVISGSKDGTCVFHTLRE-----GRYVRSLC--H 281 (413)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~------~~l~s~~~dg~i~vwd~~~-----~~~~~~~~--~ 281 (413)
..| .......-..+|..+.|.+.. ..|+.-..+|.++-|-+.. .+...++. .
T Consensus 80 ------I~p---------~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~ 144 (282)
T PF15492_consen 80 ------IPP---------AMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSS 144 (282)
T ss_pred ------cCc---------ccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecc
Confidence 000 000001123455666664321 2456666788777666532 23333333 3
Q ss_pred CCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCceeeeeecCCceeEEEec---CCCCEEEEeCCCCe------EEEEE
Q 040361 282 PSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKHLASSESNGRLNCLELS---ACGQFLVCGGDQGQ------IVVRS 352 (413)
Q Consensus 282 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~~~s---~~~~~l~~~~~dg~------i~v~d 352 (413)
+....|.++.++|..++|++|+.... + ..........+++-.+- |..+. ++..+|+. -.+|.
T Consensus 145 ~yp~Gi~~~vy~p~h~LLlVgG~~~~------~--~~~s~a~~~GLtaWRiL~~~Pyyk~-v~~~~~~~~~~~~~~~~~~ 215 (282)
T PF15492_consen 145 HYPHGINSAVYHPKHRLLLVGGCEQN------Q--DGMSKASSCGLTAWRILSDSPYYKQ-VTSSEDDITASSKRRGLLR 215 (282)
T ss_pred cCCCceeEEEEcCCCCEEEEeccCCC------C--CccccccccCceEEEEcCCCCcEEE-ccccCccccccccccceee
Confidence 33458999999999888888775322 0 00011112223332222 22222 12222221 23444
Q ss_pred CCCCceEEEecCCCCcEEEEEEccCCeEEE-EcCCCeEEEEEecCCcccc
Q 040361 353 MNSLEVVRRYSGVGKIITSLAVTPEECFLA-GTKDGCLLVYSIENRRTSL 401 (413)
Q Consensus 353 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~dg~i~vw~~~~~~~~~ 401 (413)
+-+.+.........+.|..|..+|||.+|+ ...+|.|.+|++.+-+.+.
T Consensus 216 ~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~ 265 (282)
T PF15492_consen 216 IPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQR 265 (282)
T ss_pred ccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhc
Confidence 443333222233567899999999988775 8899999999998865543
No 289
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.10 E-value=7.4e-08 Score=78.29 Aligned_cols=199 Identities=14% Similarity=0.100 Sum_probs=117.2
Q ss_pred eeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeec-------CCCeEEEEEECCC------CCEEEEccCCCcEE
Q 040361 135 QCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQ-------HRDVVSCVAVTTD------GSILATGSYDTTVM 201 (413)
Q Consensus 135 ~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~-------h~~~v~~~~~~~~------~~~l~s~s~dg~i~ 201 (413)
+-..++|+||+..|+.+-+ .|+|+++|+.. ..+..+.. -..+|..+.|.+- ...|++-..+|.++
T Consensus 45 QWRkl~WSpD~tlLa~a~S-~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~ 122 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAES-TGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLR 122 (282)
T ss_pred hheEEEECCCCcEEEEEcC-CCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceee
Confidence 3467899999998888666 99999999864 33334432 2356777777542 22466667788888
Q ss_pred EEEeccccccccccccceeecCCCceeeecCceeeee-cCCCCeEEEEEecCCCEEEEeeCCCc-----------EEEEE
Q 040361 202 VWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILC-GHDDIITCLYVSVELDIVISGSKDGT-----------CVFHT 269 (413)
Q Consensus 202 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~i~~~~~~~~~~~l~s~~~dg~-----------i~vwd 269 (413)
-|-+..+...... +.....+. .+...|.++.++|..++|+.|+.... +..|.
T Consensus 123 Sy~vs~gt~q~y~----------------e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWR 186 (282)
T PF15492_consen 123 SYLVSVGTNQGYQ----------------ENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWR 186 (282)
T ss_pred eEEEEcccCCcce----------------eeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEE
Confidence 8877543211000 00112222 24678999999999888877664322 22222
Q ss_pred ccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCceeee--eecCCceeEEEecCCCCEEEEeCCCCe
Q 040361 270 LREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKHLAS--SESNGRLNCLELSACGQFLVCGGDQGQ 347 (413)
Q Consensus 270 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~--~~~~~~i~~~~~s~~~~~l~~~~~dg~ 347 (413)
+-++.+-.. ...+.+...-..... ..+|.+-...+.. ......|..|.+||||..||+...+|.
T Consensus 187 iL~~~Pyyk-----------~v~~~~~~~~~~~~~---~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~ 252 (282)
T PF15492_consen 187 ILSDSPYYK-----------QVTSSEDDITASSKR---RGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGS 252 (282)
T ss_pred EcCCCCcEE-----------EccccCccccccccc---cceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCe
Confidence 222211111 111111111111111 1222222111111 234678999999999999999999999
Q ss_pred EEEEECCCCceEEEecCC
Q 040361 348 IVVRSMNSLEVVRRYSGV 365 (413)
Q Consensus 348 i~v~d~~~~~~~~~~~~~ 365 (413)
|.+|++.+.+....+..+
T Consensus 253 lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 253 LSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred EEEEecCcchhhcccchh
Confidence 999999998887776544
No 290
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.07 E-value=6.2e-07 Score=81.56 Aligned_cols=226 Identities=16% Similarity=0.142 Sum_probs=134.4
Q ss_pred CCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEE-EEECC--CCCEEEEccCCCcEEEEEeccccccccccccceee
Q 040361 145 ENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSC-VAVTT--DGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIE 221 (413)
Q Consensus 145 ~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~-~~~~~--~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~ 221 (413)
+..+++ +..++.+..+|..+|+.+............ ..-+| .+..++.++.+|.+..+|..+++..+... ..
T Consensus 160 ~~~v~v-~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~----~~ 234 (394)
T PRK11138 160 DGLVLV-HTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQR----IS 234 (394)
T ss_pred CCEEEE-ECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheec----cc
Confidence 344444 444899999999999998877642111100 00112 13356777888999999998887433210 00
Q ss_pred cCCCceeeecCceeeeec-CCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEE
Q 040361 222 APRKDYVIVETPFHILCG-HDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVL 300 (413)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~-h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 300 (413)
.+... .....+.. ...++ . .+..++.++.+|.+..+|..+|+.+....... ...+. ..+..++
T Consensus 235 ~~~~~-----~~~~~~~~~~~sP~----v--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~---~~~~~--~~~~~vy 298 (394)
T PRK11138 235 QPTGA-----TEIDRLVDVDTTPV----V--VGGVVYALAYNGNLVALDLRSGQIVWKREYGS---VNDFA--VDGGRIY 298 (394)
T ss_pred cCCCc-----cchhcccccCCCcE----E--ECCEEEEEEcCCeEEEEECCCCCEEEeecCCC---ccCcE--EECCEEE
Confidence 00000 00000000 01111 1 24567777789999999999999887664321 11222 2456788
Q ss_pred EECCCCeEEEEEeC-Cceeeeeec--CCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEE-EEEEcc
Q 040361 301 YGDDDLSLHLFSIN-GKHLASSES--NGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIIT-SLAVTP 376 (413)
Q Consensus 301 ~~~~d~~i~i~d~~-~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~-~~~~~~ 376 (413)
+++.++.+..+|.+ ++.+..... .....+..+ .+.++++++.+|.+++.|..+|+.+.+.+.....+. +..+ .
T Consensus 299 ~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~-~ 375 (394)
T PRK11138 299 LVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV-A 375 (394)
T ss_pred EEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE-E
Confidence 88889999999997 444332211 111222222 356788899999999999999999887764433333 2233 3
Q ss_pred CCeEEEEcCCCeEEEEEe
Q 040361 377 EECFLAGTKDGCLLVYSI 394 (413)
Q Consensus 377 ~~~~l~~~~dg~i~vw~~ 394 (413)
++++++++.||.|+.++.
T Consensus 376 ~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 376 DDKLLIQARDGTVYAITR 393 (394)
T ss_pred CCEEEEEeCCceEEEEeC
Confidence 678889999999988764
No 291
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.05 E-value=5.4e-09 Score=88.28 Aligned_cols=153 Identities=14% Similarity=0.207 Sum_probs=102.5
Q ss_pred cCCCCEEEEeecCCCeEEEEEcCCCc----EEEEeecCCCeEEEEEECCCCCEEEE---ccCCCcEEEEEeccccccccc
Q 040361 142 TPSENFLITCGNWENSFQVIALNDGR----VVQSIRQHRDVVSCVAVTTDGSILAT---GSYDTTVMVWEVIRARAPEKR 214 (413)
Q Consensus 142 ~~~~~~l~~~g~~d~~i~i~~~~~~~----~~~~~~~h~~~v~~~~~~~~~~~l~s---~s~dg~i~iw~~~~~~~~~~~ 214 (413)
.+++..+++++..+....++++.... ...... -...-+++.|..+...... .+....+.+|....+.
T Consensus 70 ~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~----- 143 (390)
T KOG3914|consen 70 TSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR----- 143 (390)
T ss_pred cCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccccC-----
Confidence 34455555556556666666654332 222221 1122233344333333333 3445556666654432
Q ss_pred cccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEcc
Q 040361 215 VRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASR 294 (413)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~ 294 (413)
...+-||-..++.++|+||.++++++.+|..|++-....-..+..+...|..-|..+++-+
T Consensus 144 -------------------~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~ 204 (390)
T KOG3914|consen 144 -------------------CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD 204 (390)
T ss_pred -------------------cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc
Confidence 3445689999999999999999999999999999888777777777776677899898886
Q ss_pred CCcEEEEECCCCeEEEEEeC-Cceeee
Q 040361 295 HGRIVLYGDDDLSLHLFSIN-GKHLAS 320 (413)
Q Consensus 295 ~~~~l~~~~~d~~i~i~d~~-~~~~~~ 320 (413)
+. .|++++.|++|++||+. ++.+..
T Consensus 205 ~~-~LlS~sGD~tlr~Wd~~sgk~L~t 230 (390)
T KOG3914|consen 205 NY-LLLSGSGDKTLRLWDITSGKLLDT 230 (390)
T ss_pred Cc-eeeecCCCCcEEEEecccCCcccc
Confidence 54 58999999999999998 555543
No 292
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.04 E-value=3.4e-07 Score=80.03 Aligned_cols=196 Identities=12% Similarity=0.065 Sum_probs=132.8
Q ss_pred ceeEEEEecCCCC--EEEEe----ecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEcc-----------C
Q 040361 134 SQCFTTMQTPSEN--FLITC----GNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGS-----------Y 196 (413)
Q Consensus 134 ~~~~~~~~~~~~~--~l~~~----g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s-----------~ 196 (413)
..+....++|.++ .|+.. +..++.+++|.+..++.+..-.--...=..+.|.+.|++|+.-- .
T Consensus 174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfg 253 (561)
T COG5354 174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFG 253 (561)
T ss_pred cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceec
Confidence 4566777777643 23332 23477999999988777655443333345688888888876421 1
Q ss_pred CCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEE--eeCCCcEEEEEccCCe
Q 040361 197 DTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVIS--GSKDGTCVFHTLREGR 274 (413)
Q Consensus 197 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s--~~~dg~i~vwd~~~~~ 274 (413)
...+.++++.... +.....-.++|...+|.|.++.+++ |-.+..+.++|++..
T Consensus 254 esnLyl~~~~e~~------------------------i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N- 308 (561)
T COG5354 254 ESNLYLLRITERS------------------------IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN- 308 (561)
T ss_pred cceEEEEeecccc------------------------cceeccccccceeeeecccCCceeEEecccccceeecccccc-
Confidence 2346777775333 2223356889999999998886654 457889999999765
Q ss_pred EEEEEeCCCCCceeeEEEccCCcEEEEECCC---CeEEEEEeCCceeeeeec-CCceeEEEecCCCCEEEEeC------C
Q 040361 275 YVRSLCHPSGSALSKLAASRHGRIVLYGDDD---LSLHLFSINGKHLASSES-NGRLNCLELSACGQFLVCGG------D 344 (413)
Q Consensus 275 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~------~ 344 (413)
....+.. ..-+.+.|+|.+++++.++-| |.+.+||..++....... .....-+.|+||++++.+.. .
T Consensus 309 l~~~~Pe---~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~ 385 (561)
T COG5354 309 LRFYFPE---QKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRV 385 (561)
T ss_pred eEEecCC---cccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCccccc
Confidence 3333322 234668899999999987654 689999999877665333 33445567999999988764 3
Q ss_pred CCeEEEEECCCCc
Q 040361 345 QGQIVVRSMNSLE 357 (413)
Q Consensus 345 dg~i~v~d~~~~~ 357 (413)
|..|.|||+....
T Consensus 386 Dn~i~l~~v~g~~ 398 (561)
T COG5354 386 DNSIKLWDVYGAK 398 (561)
T ss_pred CcceEEEEecCch
Confidence 6789999987543
No 293
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=4.4e-08 Score=86.34 Aligned_cols=173 Identities=10% Similarity=0.094 Sum_probs=126.3
Q ss_pred cceeEEEEecCCCCEEEEeecC--C---------CeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEc--cCCCc
Q 040361 133 GSQCFTTMQTPSENFLITCGNW--E---------NSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATG--SYDTT 199 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~g~~--d---------~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--s~dg~ 199 (413)
...-..+.|.+-|.-|++..+. | .++++++++.....-.+. ..++|.++.|+|+++.++++ -.=-.
T Consensus 217 kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAk 295 (566)
T KOG2315|consen 217 KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAK 295 (566)
T ss_pred ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccce
Confidence 3445667888877765544332 2 378888887434433333 57999999999999877654 44567
Q ss_pred EEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeC---CCcEEEEEccCCeEE
Q 040361 200 VMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSK---DGTCVFHTLREGRYV 276 (413)
Q Consensus 200 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~---dg~i~vwd~~~~~~~ 276 (413)
+.++|++..- + +.--+++=+++-|+|.|++++.++- .|.|-+||..+.+++
T Consensus 296 vtifnlr~~~------------------------v--~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i 349 (566)
T KOG2315|consen 296 VTIFNLRGKP------------------------V--FDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLI 349 (566)
T ss_pred EEEEcCCCCE------------------------e--EeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhc
Confidence 8899885432 2 3334566688999999999887765 578999999998888
Q ss_pred EEEeCCCCCceeeEEEccCCcEEEEECC------CCeEEEEEeCCceeeeeecCCceeEEEecCC
Q 040361 277 RSLCHPSGSALSKLAASRHGRIVLYGDD------DLSLHLFSINGKHLASSESNGRLNCLELSAC 335 (413)
Q Consensus 277 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~~~~i~~~~~s~~ 335 (413)
..+... .-+-..|+|||.++++++. |+.++||+..|..+...........+.|-|.
T Consensus 350 ~~~~a~---~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~~~f~sEL~qv~W~P~ 411 (566)
T KOG2315|consen 350 AKFKAA---NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHEKMFKSELLQVEWRPF 411 (566)
T ss_pred cccccC---CceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeehhhhhHhHhheeeeec
Confidence 888764 2456799999999999875 6789999999988876554446777777764
No 294
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.01 E-value=5.7e-09 Score=83.06 Aligned_cols=150 Identities=15% Similarity=0.141 Sum_probs=94.8
Q ss_pred CCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeec----CCCeEEEEEcCCCcEEEEe
Q 040361 97 GGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGN----WENSFQVIALNDGRVVQSI 172 (413)
Q Consensus 97 ~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~----~d~~i~i~~~~~~~~~~~~ 172 (413)
-+..++++..|+.+.+.+.+- ......+.-..+..-.+.++...++.+.+.+. .-+..++|+++..+.+..-
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~----~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~ 175 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDK----DLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPS 175 (319)
T ss_pred cCCceEecCCCceEEEEechH----HHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccc
Confidence 345688889999888754221 11111111111222233334445555554221 0224455555433222111
Q ss_pred ecCCCeEEEEEECCC-CCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEec
Q 040361 173 RQHRDVVSCVAVTTD-GSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSV 251 (413)
Q Consensus 173 ~~h~~~v~~~~~~~~-~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~ 251 (413)
..-.+.|++++-+|. .+.+++|+.||.+-+||.+.... +...+..|+.+|+.+.|+|
T Consensus 176 ~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~----------------------p~S~l~ahk~~i~eV~FHp 233 (319)
T KOG4714|consen 176 KKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAM----------------------PVSLLKAHKAEIWEVHFHP 233 (319)
T ss_pred ccccccchhhhCCcccccEEEEecCCCeEEEEEcccccc----------------------hHHHHHHhhhhhhheeccC
Confidence 122345999999984 56778889999999999987752 5677889999999999999
Q ss_pred -CCCEEEEeeCCCcEEEEEccC
Q 040361 252 -ELDIVISGSKDGTCVFHTLRE 272 (413)
Q Consensus 252 -~~~~l~s~~~dg~i~vwd~~~ 272 (413)
++..|+++++||.+..||..+
T Consensus 234 k~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 234 KNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred CCchheeEecCCCcEEEEcCCC
Confidence 556899999999999999754
No 295
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.00 E-value=7.9e-07 Score=71.28 Aligned_cols=243 Identities=16% Similarity=0.182 Sum_probs=124.0
Q ss_pred CCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccc-ccc-----c
Q 040361 145 ENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKR-VRN-----M 218 (413)
Q Consensus 145 ~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~-~~~-----~ 218 (413)
|+++ +.|++.|.+++.+..+|.....+.....-=......+++..+..|+.|++.+..|..+.....+. ... .
T Consensus 63 gdfV-V~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP 141 (354)
T KOG4649|consen 63 GDFV-VLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSP 141 (354)
T ss_pred CCEE-EEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccc
Confidence 5554 44888999999999999888777643322222335678999999999999999998876532210 000 0
Q ss_pred eeecCCCceeeecCc---e---------eeeecC--CCCeEE--EEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCC
Q 040361 219 QIEAPRKDYVIVETP---F---------HILCGH--DDIITC--LYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHP 282 (413)
Q Consensus 219 ~~~~~~~~~~~~~~~---~---------~~~~~h--~~~i~~--~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 282 (413)
........+.+..+. + ..+-.| .++|.+ ++. +..+..+.-||.+.-+| ..|+.+++....
T Consensus 142 ~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~~~~PiF~splcv---~~sv~i~~VdG~l~~f~-~sG~qvwr~~t~ 217 (354)
T KOG4649|consen 142 VIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAATRFGPIFASPLCV---GSSVIITTVDGVLTSFD-ESGRQVWRPATK 217 (354)
T ss_pred eecCCCceEEEEeccceEEEEccCCCCcceehhhhcCCccccCceec---cceEEEEEeccEEEEEc-CCCcEEEeecCC
Confidence 000101111111000 0 000000 111111 011 23445556678777777 566666654322
Q ss_pred CCCcee-eEEEc-cCCcEEEEECCCCeEEEEEeCCceeeeeecCCceeEEEecC------------CCCEEEEeCCCCeE
Q 040361 283 SGSALS-KLAAS-RHGRIVLYGDDDLSLHLFSINGKHLASSESNGRLNCLELSA------------CGQFLVCGGDQGQI 348 (413)
Q Consensus 283 ~~~~v~-~~~~~-~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~~~s~------------~~~~l~~~~~dg~i 348 (413)
.+|. .-+.+ |..+.+..+..+..+..-.+.+..+... ..+....+..+| ..++|..++.||.+
T Consensus 218 --GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~-~~g~t~~vy~~p~l~F~~h~~~~S~~~ll~~~s~dgkv 294 (354)
T KOG4649|consen 218 --GPIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWAT-QSGTTLHVYLSPKLRFDLHSPGISYPKLLRRSSGDGKV 294 (354)
T ss_pred --CceecccccCCCcceEEEEecCCeEEEeccccceEEEEe-cCCcEEEEEeCcccceeccCCCCcchhhhhhhcCCCcE
Confidence 2221 11112 3334555555543333333332222111 112222333333 13567788899998
Q ss_pred EEEECCCCceEEEecCCCCcEEEEE--------E-cc---CCeEEEEcCCCeEEEEEecCC
Q 040361 349 VVRSMNSLEVVRRYSGVGKIITSLA--------V-TP---EECFLAGTKDGCLLVYSIENR 397 (413)
Q Consensus 349 ~v~d~~~~~~~~~~~~~~~~v~~~~--------~-~~---~~~~l~~~~dg~i~vw~~~~~ 397 (413)
.|.-.+. .+.+...|.+.+..+. | +| +|+++.|+.|..++.||+++.
T Consensus 295 ~il~~~~--sl~~~~s~~g~lq~~~~~el~~eIFsSPvii~grl~igcRDdYv~cldl~~~ 353 (354)
T KOG4649|consen 295 MILMTSK--SLAEISSNGGELQNLEAIELSNEIFSSPVIIDGRLLIGCRDDYVRCLDLDTW 353 (354)
T ss_pred EEEEecc--cccccccCCCccceEEEeecCcccccCCeEEccEEEEEEccCeEEEEecccc
Confidence 8874332 2333333333222221 2 22 488999999999999999864
No 296
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.00 E-value=7.7e-09 Score=93.64 Aligned_cols=214 Identities=13% Similarity=0.148 Sum_probs=151.7
Q ss_pred CCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCE
Q 040361 176 RDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDI 255 (413)
Q Consensus 176 ~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~ 255 (413)
.....|++|+.+..+++.|+.||.+++..+.+......... ...+.+ -..-+++.||.+.|..+.|+.+.+.
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~g---laa~sn-----LsmNQtLeGH~~sV~vvTWNe~~QK 85 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSG---LAAASN-----LSMNQTLEGHNASVMVVTWNENNQK 85 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccc---cccccc-----cchhhhhccCcceEEEEEecccccc
Confidence 34678999999999999999999999999876542211100 000000 0124678999999999999999999
Q ss_pred EEEeeCCCcEEEEEccCCeEEEEE-eCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCceeeeeecC-CceeEEEec
Q 040361 256 VISGSKDGTCVFHTLREGRYVRSL-CHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKHLASSESN-GRLNCLELS 333 (413)
Q Consensus 256 l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~i~~~~~s 333 (413)
|-+...+|.|.+|-+-.|.-...+ .....+.|.+++|+.+|..++....||.|.+=.++|..+...... .....+.|+
T Consensus 86 LTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws 165 (1189)
T KOG2041|consen 86 LTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWS 165 (1189)
T ss_pred ccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeec
Confidence 999999999999999877654333 223346799999999999999999999999998888776554322 345678999
Q ss_pred CCCCEEEEeCCCCeEEEEECCCC-------ceEE----EecCCCCcEEEEEEc--------cCC-eEEEEcCCCeEEEEE
Q 040361 334 ACGQFLVCGGDQGQIVVRSMNSL-------EVVR----RYSGVGKIITSLAVT--------PEE-CFLAGTKDGCLLVYS 393 (413)
Q Consensus 334 ~~~~~l~~~~~dg~i~v~d~~~~-------~~~~----~~~~~~~~v~~~~~~--------~~~-~~l~~~~dg~i~vw~ 393 (413)
+|.+.++.+-.+|.+.+||.+.. .+.. .+......|..+.|. ||. .++++-.+|.+.+-.
T Consensus 166 ~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR 245 (1189)
T KOG2041|consen 166 EDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMR 245 (1189)
T ss_pred ccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhh
Confidence 99999999999999999997632 1111 111112235555554 242 355577777777665
Q ss_pred ecCC
Q 040361 394 IENR 397 (413)
Q Consensus 394 ~~~~ 397 (413)
-.+.
T Consensus 246 ~eND 249 (1189)
T KOG2041|consen 246 SEND 249 (1189)
T ss_pred hcCC
Confidence 4443
No 297
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.97 E-value=5.5e-06 Score=70.15 Aligned_cols=180 Identities=17% Similarity=0.123 Sum_probs=115.6
Q ss_pred eEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeec-----CCCeEEEEEECCCCCEEEEccCC--------CcEEE
Q 040361 136 CFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQ-----HRDVVSCVAVTTDGSILATGSYD--------TTVMV 202 (413)
Q Consensus 136 ~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~-----h~~~v~~~~~~~~~~~l~s~s~d--------g~i~i 202 (413)
...+++...+..++++. .+.+.++|..+++....... .....+.+++.++|+..++.... |.|..
T Consensus 42 ~~G~~~~~~~g~l~v~~--~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~ 119 (246)
T PF08450_consen 42 PNGMAFDRPDGRLYVAD--SGGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYR 119 (246)
T ss_dssp EEEEEEECTTSEEEEEE--TTCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEE
T ss_pred CceEEEEccCCEEEEEE--cCceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEE
Confidence 45555563445555545 35566669988866554443 45678999999999977775543 34555
Q ss_pred EEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEE-EeeCCCcEEEEEccCCe--E--EE
Q 040361 203 WEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVI-SGSKDGTCVFHTLREGR--Y--VR 277 (413)
Q Consensus 203 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~-s~~~dg~i~vwd~~~~~--~--~~ 277 (413)
++.. ++ +..+...-...+.++|+|+++.|+ +-+..+.|..+++.... . .+
T Consensus 120 ~~~~-~~------------------------~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~ 174 (246)
T PF08450_consen 120 IDPD-GK------------------------VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRR 174 (246)
T ss_dssp EETT-SE------------------------EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEE
T ss_pred ECCC-Ce------------------------EEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeee
Confidence 5544 22 222223344568999999998665 66678889999986322 1 12
Q ss_pred EE-eCCCC-CceeeEEEccCCcEEEEECCCCeEEEEEeCCceeeeeecC-CceeEEEec-CCCCEEEEe
Q 040361 278 SL-CHPSG-SALSKLAASRHGRIVLYGDDDLSLHLFSINGKHLASSESN-GRLNCLELS-ACGQFLVCG 342 (413)
Q Consensus 278 ~~-~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~i~~~~~s-~~~~~l~~~ 342 (413)
.+ ..... ...-.+++..+|++.++....+.|.++|.+++.+...... ..+++++|. ++.+.|++.
T Consensus 175 ~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~~~~i~~p~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 175 VFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGKLLREIELPVPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp EEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSCEEEEEE-SSSSEEEEEEESTTSSEEEEE
T ss_pred eEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCccEEEEEcCCCCCEEEEEEECCCCCEEEEE
Confidence 22 22211 2477899999999988888889999999998877765443 689999994 665555443
No 298
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.96 E-value=3e-07 Score=83.59 Aligned_cols=232 Identities=12% Similarity=0.124 Sum_probs=139.1
Q ss_pred CCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCC
Q 040361 145 ENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPR 224 (413)
Q Consensus 145 ~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 224 (413)
++.+++ +..++.++.+|.++|+.+...+........... .+..++.+..++.+..+|..+++..++.....
T Consensus 120 ~~~v~v-~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~------ 190 (394)
T PRK11138 120 GGKVYI-GSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDV------ 190 (394)
T ss_pred CCEEEE-EcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCC------
Confidence 445554 445899999999999998777643321111112 24467777888999999999988433211000
Q ss_pred CceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCC---c---eeeEEEcc--CC
Q 040361 225 KDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGS---A---LSKLAASR--HG 296 (413)
Q Consensus 225 ~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~---~---v~~~~~~~--~~ 296 (413)
+.....+...++ . .+..++.++.+|.+...|..+|+.+......... . ...+..+| .+
T Consensus 191 --------~~~~~~~~~sP~----v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~ 256 (394)
T PRK11138 191 --------PSLTLRGESAPA----T--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVG 256 (394)
T ss_pred --------CcccccCCCCCE----E--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEEC
Confidence 000011111121 1 1235666778999999999999887765421110 0 11111222 24
Q ss_pred cEEEEECCCCeEEEEEeC-CceeeeeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCC-CcEEEEEE
Q 040361 297 RIVLYGDDDLSLHLFSIN-GKHLASSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVG-KIITSLAV 374 (413)
Q Consensus 297 ~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-~~v~~~~~ 374 (413)
..+++++.++.+..+|.. ++.+-...... ...+. ..+..+++++.+|.+..+|..+++.+....... ....+...
T Consensus 257 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v 333 (394)
T PRK11138 257 GVVYALAYNGNLVALDLRSGQIVWKREYGS-VNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL 333 (394)
T ss_pred CEEEEEEcCCeEEEEECCCCCEEEeecCCC-ccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE
Confidence 567777788999999997 44443332221 11222 246778888899999999999998775443211 11222222
Q ss_pred ccCCeEEEEcCCCeEEEEEecCCcccccc
Q 040361 375 TPEECFLAGTKDGCLLVYSIENRRTSLPR 403 (413)
Q Consensus 375 ~~~~~~l~~~~dg~i~vw~~~~~~~~~~~ 403 (413)
. ++.+++++.||.|++.|.++++.....
T Consensus 334 ~-~g~l~v~~~~G~l~~ld~~tG~~~~~~ 361 (394)
T PRK11138 334 Y-NGYLVVGDSEGYLHWINREDGRFVAQQ 361 (394)
T ss_pred E-CCEEEEEeCCCEEEEEECCCCCEEEEE
Confidence 2 678888999999999999998765443
No 299
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.95 E-value=4.8e-09 Score=83.49 Aligned_cols=205 Identities=18% Similarity=0.229 Sum_probs=121.6
Q ss_pred EEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEE
Q 040361 179 VSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVIS 258 (413)
Q Consensus 179 v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s 258 (413)
++.+.++.+ -.|+++-.++.+......++.....-.+... -.+...+..|.++-.+-+.+-.++-+++
T Consensus 39 ~~~~~~v~~-~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~-----------i~~~~~~a~~sep~p~~~~s~~~t~V~~ 106 (319)
T KOG4714|consen 39 LSKVSLSAE-YILFTGETSSQIISLGKGRGRCISLWERDDG-----------IDPFKVLAKNSEIDPNDACTMTDNRVCI 106 (319)
T ss_pred EEEeechhh-heeecccchhheeeeccceEEEechhhcccC-----------cCceeeeeccCCCCCcccccccCCceEe
Confidence 555555533 3566666666665554433321100000000 0134445555554444444445677999
Q ss_pred eeCCCcEEEEEccCCeEEE-EEeCCCCCceeeEEEccCCcEEEEEC-----CCCeEEEEEeCCcee--eeeecCCceeEE
Q 040361 259 GSKDGTCVFHTLREGRYVR-SLCHPSGSALSKLAASRHGRIVLYGD-----DDLSLHLFSINGKHL--ASSESNGRLNCL 330 (413)
Q Consensus 259 ~~~dg~i~vwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~-----~d~~i~i~d~~~~~~--~~~~~~~~i~~~ 330 (413)
+..||.+.+.+.+.-..+. .+...+ ..-.+.++...++.+.++. .-+..+.|+++.... ........+.++
T Consensus 107 ~~~dg~~~v~s~~~~~~~~~~i~~~~-~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l 185 (319)
T KOG4714|consen 107 GYADGSLAVFSTDKDLALMSRIPSIH-SGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTAL 185 (319)
T ss_pred cCCCceEEEEechHHHhhhhhccccc-ccccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhh
Confidence 9999999999876522111 111110 0111222333344444432 123566777763222 222233448899
Q ss_pred EecCCC-CEEEEeCCCCeEEEEECCCCc-eEEEecCCCCcEEEEEEccC--CeEEEEcCCCeEEEEEecC
Q 040361 331 ELSACG-QFLVCGGDQGQIVVRSMNSLE-VVRRYSGVGKIITSLAVTPE--ECFLAGTKDGCLLVYSIEN 396 (413)
Q Consensus 331 ~~s~~~-~~l~~~~~dg~i~v~d~~~~~-~~~~~~~~~~~v~~~~~~~~--~~~l~~~~dg~i~vw~~~~ 396 (413)
+-+|.. ..+++|++||.+-+||.++.. ++..+..|+.+++.+.|+|. .+++++++||.+--||..+
T Consensus 186 ~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 186 CSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred hCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 988865 577789999999999999864 33456789999999999998 4788999999999999874
No 300
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.95 E-value=6.7e-09 Score=85.98 Aligned_cols=151 Identities=14% Similarity=0.167 Sum_probs=112.7
Q ss_pred EEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCcee
Q 040361 149 ITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYV 228 (413)
Q Consensus 149 ~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (413)
+++|. +..+-+-|+++|-.. .+. ..+.|.++.|...++.+..|..+|.|..+|++.+..-.
T Consensus 228 fs~G~-sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~---------------- 288 (425)
T KOG2695|consen 228 FSVGL-SQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGN---------------- 288 (425)
T ss_pred ecccc-cceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCC----------------
Confidence 44455 778888888876543 233 56778899998888999999999999999998763110
Q ss_pred eecCceeeeecCCCCeEEEEEec-CCCEEEEeeCCCcEEEEEccCCeE---EEEEeCCCCC-ceeeEEEccCCcEEEEEC
Q 040361 229 IVETPFHILCGHDDIITCLYVSV-ELDIVISGSKDGTCVFHTLREGRY---VRSLCHPSGS-ALSKLAASRHGRIVLYGD 303 (413)
Q Consensus 229 ~~~~~~~~~~~h~~~i~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~---~~~~~~~~~~-~v~~~~~~~~~~~l~~~~ 303 (413)
..+...+ -|...|+++.... ++.+|++.+.+|+|++||++.-++ ++++++|.+. .-.-+.+.+....+++++
T Consensus 289 --~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~G 365 (425)
T KOG2695|consen 289 --GWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVG 365 (425)
T ss_pred --CcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEcc
Confidence 0133444 4999999998776 778999999999999999997776 7888776442 223345566778889999
Q ss_pred CCCeEEEEEeC-Cceeeee
Q 040361 304 DDLSLHLFSIN-GKHLASS 321 (413)
Q Consensus 304 ~d~~i~i~d~~-~~~~~~~ 321 (413)
+|...++|.++ +..+...
T Consensus 366 dDcytRiWsl~~ghLl~ti 384 (425)
T KOG2695|consen 366 DDCYTRIWSLDSGHLLCTI 384 (425)
T ss_pred CeeEEEEEecccCceeecc
Confidence 99999999998 4444443
No 301
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.95 E-value=1e-07 Score=87.68 Aligned_cols=182 Identities=20% Similarity=0.275 Sum_probs=138.0
Q ss_pred CCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCE
Q 040361 176 RDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDI 255 (413)
Q Consensus 176 ~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~ 255 (413)
.+.++|++++ ++.|+-|+.+|.|++++.... + .+...|... ..+|.+
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~------------------------~-~~~~~~s~~------~~~Gey 85 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGN------------------------P-KTNFDHSSS------ILEGEY 85 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCc------------------------c-ccccccccc------ccCCce
Confidence 4567777775 578999999999999987543 1 223344443 568999
Q ss_pred EEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccC-----CcEEEEECCCCeEEEEEeC--Cce--eeeeecCCc
Q 040361 256 VISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRH-----GRIVLYGDDDLSLHLFSIN--GKH--LASSESNGR 326 (413)
Q Consensus 256 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~d~~i~i~d~~--~~~--~~~~~~~~~ 326 (413)
+++|+.||+|.+-.+.+.+...++... .++.+++++|+ .+.+++|+..| +.++.-+ +.. +......++
T Consensus 86 ~asCS~DGkv~I~sl~~~~~~~~~df~--rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~ 162 (846)
T KOG2066|consen 86 VASCSDDGKVVIGSLFTDDEITQYDFK--RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGP 162 (846)
T ss_pred EEEecCCCcEEEeeccCCccceeEecC--CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccc
Confidence 999999999999999998888877764 37899999997 56789999888 8777655 332 223567899
Q ss_pred eeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCC------cEEEEEEccCCeEEEEcCCCeEEEEEecCC
Q 040361 327 LNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGK------IITSLAVTPEECFLAGTKDGCLLVYSIENR 397 (413)
Q Consensus 327 i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~------~v~~~~~~~~~~~l~~~~dg~i~vw~~~~~ 397 (413)
|.++.| .|+++|-++.+| |+|||..+.+.+..++.... ....+.|.++.+++.|-. .+|++..++.+
T Consensus 163 I~~i~W--~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~-d~v~i~~I~~~ 235 (846)
T KOG2066|consen 163 IHSIKW--RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWG-DSVKICSIKKR 235 (846)
T ss_pred eEEEEe--cCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecC-CeEEEEEEecc
Confidence 999999 689999998887 89999999888877654332 235678887776666544 57999999843
No 302
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.95 E-value=5.5e-09 Score=86.46 Aligned_cols=145 Identities=14% Similarity=0.186 Sum_probs=111.3
Q ss_pred EEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCc------eeeeeecCCceeEE
Q 040361 257 ISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGK------HLASSESNGRLNCL 330 (413)
Q Consensus 257 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~------~~~~~~~~~~i~~~ 330 (413)
++.+.+-.+-+-|+.+|... .+. ..+.|.++.|...++++..|+.+|.|..+|++.+ ......|+..|+++
T Consensus 228 fs~G~sqqv~L~nvetg~~q-sf~--sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtsl 304 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQ-SFQ--SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSL 304 (425)
T ss_pred ecccccceeEEEEeeccccc-ccc--cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhh
Confidence 45556777888888777533 232 3457888899988999999999999999999733 44456789999998
Q ss_pred EecC-CCCEEEEeCCCCeEEEEECCCCce---EEEecCCCCcEEEEE--EccC-CeEEEEcCCCeEEEEEecCCcccccc
Q 040361 331 ELSA-CGQFLVCGGDQGQIVVRSMNSLEV---VRRYSGVGKIITSLA--VTPE-ECFLAGTKDGCLLVYSIENRRTSLPR 403 (413)
Q Consensus 331 ~~s~-~~~~l~~~~~dg~i~v~d~~~~~~---~~~~~~~~~~v~~~~--~~~~-~~~l~~~~dg~i~vw~~~~~~~~~~~ 403 (413)
..-. ++++|++.+.+|+|++||++.-++ +.++++|...-.-+- ..+. |.+++++.|...+||.++.+......
T Consensus 305 q~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ti 384 (425)
T KOG2695|consen 305 QILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTI 384 (425)
T ss_pred hhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeecc
Confidence 8766 788999999999999999997666 888888865433333 3344 56778999999999999987655444
Q ss_pred c
Q 040361 404 N 404 (413)
Q Consensus 404 ~ 404 (413)
+
T Consensus 385 p 385 (425)
T KOG2695|consen 385 P 385 (425)
T ss_pred C
Confidence 3
No 303
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.91 E-value=3.9e-09 Score=60.67 Aligned_cols=39 Identities=38% Similarity=0.770 Sum_probs=36.9
Q ss_pred CcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEE
Q 040361 166 GRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWE 204 (413)
Q Consensus 166 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~ 204 (413)
++++..+++|.+.|++++|+|++++|++|+.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
No 304
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.90 E-value=4.9e-08 Score=90.92 Aligned_cols=179 Identities=16% Similarity=0.187 Sum_probs=136.4
Q ss_pred CCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecC
Q 040361 144 SENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAP 223 (413)
Q Consensus 144 ~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 223 (413)
+...++.+| ....+..+|+.+.+..+...-..+.|+-++. +++++.+|...|+|.+-|..+.+
T Consensus 146 ~~~~~i~Gg-~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~-------------- 208 (1118)
T KOG1275|consen 146 GPSTLIMGG-LQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFE-------------- 208 (1118)
T ss_pred CCcceeecc-hhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCc--------------
Confidence 344455544 4667888899888888777665656776665 67899999999999999998887
Q ss_pred CCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeC---------CCcEEEEEccCCeEEEEEeCCCCCceeeEEEcc
Q 040361 224 RKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSK---------DGTCVFHTLREGRYVRSLCHPSGSALSKLAASR 294 (413)
Q Consensus 224 ~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~---------dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~ 294 (413)
.++++..|.+.|..+.. .|+.|++++. |..|+|||++..+.+.-+..+.+ ..-+.|.|
T Consensus 209 ---------~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~--P~flrf~P 275 (1118)
T KOG1275|consen 209 ---------TIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYG--PQFLRFHP 275 (1118)
T ss_pred ---------eeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccC--chhhhhcc
Confidence 78999999999977654 6789999875 55689999998887766665543 34566777
Q ss_pred C-CcEEEEECCCCeEEEEEeC---Ccee--ee-eecCCceeEEEecCCCCEEEEeCCCCeEEEEE
Q 040361 295 H-GRIVLYGDDDLSLHLFSIN---GKHL--AS-SESNGRLNCLELSACGQFLVCGGDQGQIVVRS 352 (413)
Q Consensus 295 ~-~~~l~~~~~d~~i~i~d~~---~~~~--~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d 352 (413)
. ...+++.+..|...+-|.. .... .. ......+..+.++++|+.++.|..+|.|.+|.
T Consensus 276 sl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 276 SLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 4 4567888888999998843 2211 12 23344589999999999999999999999997
No 305
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.87 E-value=1.5e-08 Score=89.09 Aligned_cols=212 Identities=14% Similarity=0.139 Sum_probs=139.2
Q ss_pred cceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCC-------CcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEE
Q 040361 129 SFELGSQCFTTMQTPSENFLITCGNWENSFQVIALND-------GRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVM 201 (413)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~-------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~ 201 (413)
..+|...+..+....+.+.++. ++.|.+|++|.+.. ..+..+++.|..+|..+.|-.+-++++++ ||-|.
T Consensus 731 f~GH~~~iRai~AidNENSFiS-ASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giH 807 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAIDNENSFIS-ASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIH 807 (1034)
T ss_pred ccCcHHHhHHHHhcccccceee-ccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcce
Confidence 3444555666655566666665 55599999999853 23667788999999999999988888765 78999
Q ss_pred EEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEe-eCCCcEEEEEccCCeEEEEEe
Q 040361 202 VWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISG-SKDGTCVFHTLREGRYVRSLC 280 (413)
Q Consensus 202 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~ 280 (413)
+||.--++...+ +. -..-.+..+.|.|+. +-+..+++.| +...+|+++|.+.++....++
T Consensus 808 lWDPFigr~Laq----~~--------------dapk~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~k 868 (1034)
T KOG4190|consen 808 LWDPFIGRLLAQ----ME--------------DAPKEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCELK 868 (1034)
T ss_pred eecccccchhHh----hh--------------cCcccCCCceeEecc-cCcchheeeeccchhhheeeecccccceeeEE
Confidence 999866551110 00 000011222333332 1133444444 778899999999888766654
Q ss_pred CC----CCCceeeEEEccCCcEEEEECCCCeEEEEEeCCce-eeee-ecCCceeEEEecCCCCEEEEeCCCCeEEE-EEC
Q 040361 281 HP----SGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKH-LASS-ESNGRLNCLELSACGQFLVCGGDQGQIVV-RSM 353 (413)
Q Consensus 281 ~~----~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~v-~d~ 353 (413)
.. .+..++++++.+.|+.++++-.+|.|.+.|.+..+ +... ........++ .|..+.++....|.++.+ |..
T Consensus 869 Vcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWha 947 (1034)
T KOG4190|consen 869 VCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHA 947 (1034)
T ss_pred eccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehh
Confidence 21 12467899999999999999999999999998544 3332 1222222232 356677888888888888 877
Q ss_pred CCCceEEEec
Q 040361 354 NSLEVVRRYS 363 (413)
Q Consensus 354 ~~~~~~~~~~ 363 (413)
-++....+.+
T Consensus 948 ldgimh~q~k 957 (1034)
T KOG4190|consen 948 LDGIMHLQDK 957 (1034)
T ss_pred cCCeeeeccC
Confidence 6665444443
No 306
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=8.8e-07 Score=82.39 Aligned_cols=207 Identities=15% Similarity=0.266 Sum_probs=136.8
Q ss_pred ecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCe-EEEEEECCCCCEEEEccCCCc-----EEEEEeccccccccc
Q 040361 141 QTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDV-VSCVAVTTDGSILATGSYDTT-----VMVWEVIRARAPEKR 214 (413)
Q Consensus 141 ~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~l~s~s~dg~-----i~iw~~~~~~~~~~~ 214 (413)
+++.+..+++ |+.+|.|.+++- .-+.++.++.+... |..+-...+..+|++.+.|+. +++|+++.......+
T Consensus 31 ~~s~~~~vvi-gt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 31 CSSSTGSVVI-GTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EcCCCceEEE-eeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 4555555554 777998888763 33445778777776 554444444478888777654 899999766421110
Q ss_pred cccceeecCCCceeeecCce--eeee-----cCCCCeEEEEEecCCCEEEEeeCCCcEEEEEcc---CCeEEEEEeCCCC
Q 040361 215 VRNMQIEAPRKDYVIVETPF--HILC-----GHDDIITCLYVSVELDIVISGSKDGTCVFHTLR---EGRYVRSLCHPSG 284 (413)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~--~~~~-----~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~---~~~~~~~~~~~~~ 284 (413)
. ++ ..+. ....++.+++.+.+-+.+|.|-.+|.|..+.-. .......+....+
T Consensus 109 ~-----------------c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~ 171 (933)
T KOG2114|consen 109 Q-----------------CLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGK 171 (933)
T ss_pred c-----------------eeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCC
Confidence 0 11 1111 235678899999999999999999999988421 2222223344446
Q ss_pred CceeeEEEccCCcEEEEECCCCeEEEEEeCCce--ee-eeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEE
Q 040361 285 SALSKLAASRHGRIVLYGDDDLSLHLFSINGKH--LA-SSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRR 361 (413)
Q Consensus 285 ~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~-~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~ 361 (413)
.+|+.+++..++..++.......|.+|.+.++. .. ...+...+.|.++++....+++++.. .+.+||.....+...
T Consensus 172 ~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e-~l~fY~sd~~~~cfa 250 (933)
T KOG2114|consen 172 EPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSE-FLYFYDSDGRGPCFA 250 (933)
T ss_pred CCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCc-eEEEEcCCCcceeee
Confidence 799999999988773333334579999998666 22 23567789999998766545555443 699999987777777
Q ss_pred ec-CCCC
Q 040361 362 YS-GVGK 367 (413)
Q Consensus 362 ~~-~~~~ 367 (413)
+. +|..
T Consensus 251 f~~g~kk 257 (933)
T KOG2114|consen 251 FEVGEKK 257 (933)
T ss_pred ecCCCeE
Confidence 76 5554
No 307
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=1.2e-07 Score=81.59 Aligned_cols=238 Identities=13% Similarity=0.093 Sum_probs=153.3
Q ss_pred CceeeecCCCCccccCCCcCCCcc-cCCCCcccce-ecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEee--
Q 040361 98 GNFTFSGSQDPFFGVGADILSPRN-VGSPLAESFE-LGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIR-- 173 (413)
Q Consensus 98 ~~~l~~~~~d~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~-- 173 (413)
.+++.+++.||.++. |.+.. ....+..++. |-..+.+++.+.++..+...+.-|..++++|+++-..+.-++
T Consensus 20 a~fiiqASlDGh~KF----WkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~ 95 (558)
T KOG0882|consen 20 AKFIIQASLDGHKKF----WKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLV 95 (558)
T ss_pred hheEEeeecchhhhh----cCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccc
Confidence 478899999999998 55544 3333333333 334455555555555555544448999999998755543222
Q ss_pred cCCCeEEEEEECCC-C--CEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEe
Q 040361 174 QHRDVVSCVAVTTD-G--SILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVS 250 (413)
Q Consensus 174 ~h~~~v~~~~~~~~-~--~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~ 250 (413)
.-.+.+.++ .++. . ..-++.-.++.+.++|-....+ .....-.-|..+|.++.++
T Consensus 96 ~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~---------------------q~~~fkklH~sPV~~i~y~ 153 (558)
T KOG0882|consen 96 DLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFC---------------------QDGYFKKLHFSPVKKIRYN 153 (558)
T ss_pred cCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcC---------------------ccceecccccCceEEEEee
Confidence 122322222 2221 1 2223334678899998655431 1233345699999999999
Q ss_pred cCCCEEEEeeCCCcEEEEEccC------CeEEEEEeC--------CCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCc
Q 040361 251 VELDIVISGSKDGTCVFHTLRE------GRYVRSLCH--------PSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGK 316 (413)
Q Consensus 251 ~~~~~l~s~~~dg~i~vwd~~~------~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 316 (413)
+-+..+++....|.|..|.... .+....++. .......++.++|++..+.+-+.|..|++++.++.
T Consensus 154 qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtG 233 (558)
T KOG0882|consen 154 QAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTG 233 (558)
T ss_pred ccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccc
Confidence 9999999999999999998762 111111111 11245788999999999999999999999999754
Q ss_pred eeeee----------------------------------ec-CCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEE
Q 040361 317 HLASS----------------------------------ES-NGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRR 361 (413)
Q Consensus 317 ~~~~~----------------------------------~~-~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~ 361 (413)
.+... .+ ...-+.+.|...|++|+.|+-=| |+|.++.++..++.
T Consensus 234 klvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri 312 (558)
T KOG0882|consen 234 KLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRI 312 (558)
T ss_pred hhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEE
Confidence 32210 00 01235567888899999987765 78888888776655
Q ss_pred e
Q 040361 362 Y 362 (413)
Q Consensus 362 ~ 362 (413)
+
T Consensus 313 ~ 313 (558)
T KOG0882|consen 313 L 313 (558)
T ss_pred e
Confidence 4
No 308
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.84 E-value=2.8e-08 Score=90.41 Aligned_cols=206 Identities=12% Similarity=0.149 Sum_probs=142.7
Q ss_pred CCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCC--CeEEEEEecCC
Q 040361 176 RDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDD--IITCLYVSVEL 253 (413)
Q Consensus 176 ~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~i~~~~~~~~~ 253 (413)
.+.+.++..+|.|+-++.++.-| +.+.|+.....+. .-+ .|.. .|-...|++..
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~pp----------------------r~l-~h~tpw~vad~qws~h~ 79 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPP----------------------RWL-HHITPWQVADVQWSPHP 79 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCc----------------------eee-eccCcchhcceecccCC
Confidence 35677888999999999999877 5667776654221 111 1222 24455666532
Q ss_pred --CEEEEeeCCCcEEEEEcc--CCeEEEEEeCCCCCceeeEEEccC-CcEEEEECCCCeEEEEEeCCce--eee-eecCC
Q 040361 254 --DIVISGSKDGTCVFHTLR--EGRYVRSLCHPSGSALSKLAASRH-GRIVLYGDDDLSLHLFSINGKH--LAS-SESNG 325 (413)
Q Consensus 254 --~~l~s~~~dg~i~vwd~~--~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~--~~~-~~~~~ 325 (413)
.+-+.......-.+|++. +.+.+.-+...+...++.+-|.|. ...+++++.|..+..||++... +.. .....
T Consensus 80 a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s 159 (1081)
T KOG0309|consen 80 AKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRS 159 (1081)
T ss_pred CCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccc
Confidence 333444444555688875 333444444445678999999985 5678899999999999998432 222 23455
Q ss_pred ceeEEEecCCCCEEEEeCCCCeEEEEECCCC-ceEEEecCCCCcEEEEEEccC--CeEEEEcCCCeEEEEEecCCccccc
Q 040361 326 RLNCLELSACGQFLVCGGDQGQIVVRSMNSL-EVVRRYSGVGKIITSLAVTPE--ECFLAGTKDGCLLVYSIENRRTSLP 402 (413)
Q Consensus 326 ~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~dg~i~vw~~~~~~~~~~ 402 (413)
....+.|+-....+.+.+....|++||.+.+ .++..+++|...|.++.|..- +.+++++.||+|++|+.++......
T Consensus 160 ~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~ 239 (1081)
T KOG0309|consen 160 AASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESK 239 (1081)
T ss_pred cCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccc
Confidence 6678889876656666667778999999865 577888999999999999865 6788999999999999987655444
Q ss_pred ccc
Q 040361 403 RNV 405 (413)
Q Consensus 403 ~~~ 405 (413)
+.+
T Consensus 240 ~~v 242 (1081)
T KOG0309|consen 240 RTV 242 (1081)
T ss_pred eec
Confidence 433
No 309
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=9.9e-07 Score=78.00 Aligned_cols=252 Identities=11% Similarity=0.103 Sum_probs=156.1
Q ss_pred cCCcEEEEecCceEEEE----------EeeccCCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEE
Q 040361 71 LDSSIVLVNQGLTLSVK----------MWLTTQLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTM 140 (413)
Q Consensus 71 ~~~~~~~~~~~~~~~~~----------~~~~~~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (413)
....+++|+.......+ .|-.-.+|-|++++|.-..++ +.++ ....+.......+. ...+....
T Consensus 280 e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~s-isIy----Etpsf~lld~Kslk-i~gIr~Fs 353 (698)
T KOG2314|consen 280 EGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNS-ISIY----ETPSFMLLDKKSLK-ISGIRDFS 353 (698)
T ss_pred CCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccce-EEEE----ecCceeeecccccC-CccccCcc
Confidence 34567777754433222 233335788888888665543 4443 11112222222222 35567788
Q ss_pred ecCCCCEEEEeecCCC----eEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEcc----------CCCcEEEEEec
Q 040361 141 QTPSENFLITCGNWEN----SFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGS----------YDTTVMVWEVI 206 (413)
Q Consensus 141 ~~~~~~~l~~~g~~d~----~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s----------~dg~i~iw~~~ 206 (413)
|+|.++.|+...-... .+.+..+.+++.+++-.-|.-.=..+-|..+|.+|+.-- .=..+.|+.++
T Consensus 354 wsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrir 433 (698)
T KOG2314|consen 354 WSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIR 433 (698)
T ss_pred cCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEee
Confidence 9999888888654333 677888888888887776655555677888888887531 11234455554
Q ss_pred cccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeC---CCcEEEEEccC-Ce---EEEEE
Q 040361 207 RARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSK---DGTCVFHTLRE-GR---YVRSL 279 (413)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~---dg~i~vwd~~~-~~---~~~~~ 279 (413)
.... ++..+ .-...|...+|-|.|+.+++-+. ..++.+|.+++ .. .+..+
T Consensus 434 eKdI----------------------pve~v-elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~ 490 (698)
T KOG2314|consen 434 EKDI----------------------PVEVV-ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKEL 490 (698)
T ss_pred ccCC----------------------Cceee-ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhh
Confidence 4431 22222 34567889999999987765443 34688888763 22 22233
Q ss_pred eCCCCCceeeEEEccCCcEEEEE---CCCCeEEEEEeCCcee--eeeecCCceeEEEecCCCCEEEEeCCCC------eE
Q 040361 280 CHPSGSALSKLAASRHGRIVLYG---DDDLSLHLFSINGKHL--ASSESNGRLNCLELSACGQFLVCGGDQG------QI 348 (413)
Q Consensus 280 ~~~~~~~v~~~~~~~~~~~l~~~---~~d~~i~i~d~~~~~~--~~~~~~~~i~~~~~s~~~~~l~~~~~dg------~i 348 (413)
. ....+.+.|+|.|++++++ +..|.+.++|+.-..+ .........+.+.|.|.|+|+++++.-. --
T Consensus 491 d---k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GY 567 (698)
T KOG2314|consen 491 D---KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGY 567 (698)
T ss_pred c---ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhhhccccce
Confidence 2 2357889999999998875 4578899999983222 2223334567899999999999987543 34
Q ss_pred EEEECC
Q 040361 349 VVRSMN 354 (413)
Q Consensus 349 ~v~d~~ 354 (413)
++|+.+
T Consensus 568 ri~tfq 573 (698)
T KOG2314|consen 568 RIFTFQ 573 (698)
T ss_pred EEEEee
Confidence 555544
No 310
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.84 E-value=1.8e-06 Score=72.85 Aligned_cols=191 Identities=14% Similarity=0.165 Sum_probs=118.6
Q ss_pred CCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeec
Q 040361 143 PSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEA 222 (413)
Q Consensus 143 ~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~ 222 (413)
+++..++++ +.++.|+.||..+|+.+..... .+.+..... .++..++.++.++.+..+|..+++.
T Consensus 34 ~~~~~v~~~-~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~-~~~~~v~v~~~~~~l~~~d~~tG~~------------ 98 (238)
T PF13360_consen 34 PDGGRVYVA-SGDGNLYALDAKTGKVLWRFDL-PGPISGAPV-VDGGRVYVGTSDGSLYALDAKTGKV------------ 98 (238)
T ss_dssp EETTEEEEE-ETTSEEEEEETTTSEEEEEEEC-SSCGGSGEE-EETTEEEEEETTSEEEEEETTTSCE------------
T ss_pred EeCCEEEEE-cCCCEEEEEECCCCCEEEEeec-cccccceee-ecccccccccceeeeEecccCCcce------------
Confidence 356666664 4499999999999999887764 222111111 2345667777888999999888873
Q ss_pred CCCceeeecCceeee-ecCC---CCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCc---------eee
Q 040361 223 PRKDYVIVETPFHIL-CGHD---DIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSA---------LSK 289 (413)
Q Consensus 223 ~~~~~~~~~~~~~~~-~~h~---~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~---------v~~ 289 (413)
+... .... ...........++.++.+..++.|..+|+++|+.+.......... +..
T Consensus 99 -----------~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~ 167 (238)
T PF13360_consen 99 -----------LWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDING 167 (238)
T ss_dssp -----------EEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEE
T ss_pred -----------eeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeeccccc
Confidence 2221 1110 111222233337788888889999999999999998887633211 112
Q ss_pred EEEccCCcEEEEECCCCeEEEEEeCCceeeeeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEE
Q 040361 290 LAASRHGRIVLYGDDDLSLHLFSINGKHLASSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRR 361 (413)
Q Consensus 290 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~ 361 (413)
-....++ .++.+..++.+..+|+......-......+..+ ...++..|++++.++.|..||+.+++.+.+
T Consensus 168 ~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 168 SPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKPISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp EEECCTT-EEEEECCTSSEEEEETTTTEEEEEECSS-ECEC-EECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred ceEEECC-EEEEEcCCCeEEEEECCCCCEEEEecCCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence 2222234 677777777544448885443222222332221 346778888888999999999999987653
No 311
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.83 E-value=5.1e-06 Score=76.62 Aligned_cols=305 Identities=10% Similarity=0.082 Sum_probs=171.0
Q ss_pred CCCC--CceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecC---CCCEEEEeecCCCeEEEEEcCCCcE
Q 040361 94 LQSG--GNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTP---SENFLITCGNWENSFQVIALNDGRV 168 (413)
Q Consensus 94 ~s~~--~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~g~~d~~i~i~~~~~~~~ 168 (413)
+||. ...+|++...|.+.+++...... ....-.+.+.+..++|.+ +.+.++++-.....+.+|+..+|+.
T Consensus 73 lS~~~~~lliAsaD~~GrIil~d~~~~s~-----~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k 147 (1062)
T KOG1912|consen 73 LSPSSSQLLIASADISGRIILVDFVLASV-----INWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK 147 (1062)
T ss_pred cCccccceeEEeccccCcEEEEEehhhhh-----hhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCce
Confidence 4644 24567888888888865322111 111111234445555554 3324444344478999999999999
Q ss_pred EEEeecCCCeEEEEEECC-CCCEEEEccCCCcEEEEEeccccccccccccceeecCCCc---------------------
Q 040361 169 VQSIRQHRDVVSCVAVTT-DGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKD--------------------- 226 (413)
Q Consensus 169 ~~~~~~h~~~v~~~~~~~-~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~--------------------- 226 (413)
..+.........|+.+.| |.+.+..-+..|.+.+-+.-....+....+.++...+..+
T Consensus 148 ~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa 227 (1062)
T KOG1912|consen 148 FWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASA 227 (1062)
T ss_pred eeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcch
Confidence 998887777888899998 6666666666677766665444333333333332222111
Q ss_pred -----------------eee-------------ecCceeeeecCCCCeEEEEEecCC--CEEEEeeCCCcEEEEEccCC-
Q 040361 227 -----------------YVI-------------VETPFHILCGHDDIITCLYVSVEL--DIVISGSKDGTCVFHTLREG- 273 (413)
Q Consensus 227 -----------------~~~-------------~~~~~~~~~~h~~~i~~~~~~~~~--~~l~s~~~dg~i~vwd~~~~- 273 (413)
.++ .+.++....-..+.+.-+.+-|++ ..|...-.||.+.+|-.+..
T Consensus 228 ~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~ 307 (1062)
T KOG1912|consen 228 YFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEP 307 (1062)
T ss_pred hHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccC
Confidence 000 012222222223333345555554 46888889999999965431
Q ss_pred ---------------eEEEEEeCCCCCceeeEEEccC-CcEEEEECCCCeEEEEEeCCceeee-----------------
Q 040361 274 ---------------RYVRSLCHPSGSALSKLAASRH-GRIVLYGDDDLSLHLFSINGKHLAS----------------- 320 (413)
Q Consensus 274 ---------------~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~----------------- 320 (413)
.....+..-....+......|. ...++.--.+|.+.+|.+....+..
T Consensus 308 ~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~ 387 (1062)
T KOG1912|consen 308 TEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNL 387 (1062)
T ss_pred ccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccC
Confidence 1111111111111122222232 3333333445566667664211110
Q ss_pred ----------------eecCCceeEEEec-----------CCC-------CEEEEeCCCCeEEEEECCCCceEEEecCCC
Q 040361 321 ----------------SESNGRLNCLELS-----------ACG-------QFLVCGGDQGQIVVRSMNSLEVVRRYSGVG 366 (413)
Q Consensus 321 ----------------~~~~~~i~~~~~s-----------~~~-------~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~ 366 (413)
..|....++.... |.+ .+++.|...|+|.++|+.++..-+.+..|.
T Consensus 388 ~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht 467 (1062)
T KOG1912|consen 388 STKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHT 467 (1062)
T ss_pred ceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcccc
Confidence 0122222332222 222 367899999999999999999999999999
Q ss_pred CcEEEEEEccCCeEEEEcC----------CCeEEEEEecCCcccccc
Q 040361 367 KIITSLAVTPEECFLAGTK----------DGCLLVYSIENRRTSLPR 403 (413)
Q Consensus 367 ~~v~~~~~~~~~~~l~~~~----------dg~i~vw~~~~~~~~~~~ 403 (413)
+.|.++.|.....+++.+. -+.+.+-|+.+|....-+
T Consensus 468 ~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR 514 (1062)
T KOG1912|consen 468 SLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFR 514 (1062)
T ss_pred cceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccc
Confidence 9999999998877776221 234778888888655444
No 312
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.82 E-value=4.2e-06 Score=80.96 Aligned_cols=255 Identities=11% Similarity=0.097 Sum_probs=149.0
Q ss_pred cceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEe----ccc
Q 040361 133 GSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEV----IRA 208 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~----~~~ 208 (413)
...++++.|.-+...++++-. +|.|.+-|.++.... ....-.+.|.+++|+||++.++..+.++++.+-.- -..
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~-~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E 145 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITA-LGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAE 145 (1265)
T ss_pred CcceEEEEEecccceEEEEec-CCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhc
Confidence 356788888888877776444 888888887765432 22225678999999999999988888777665332 111
Q ss_pred ccc----ccccccceeecCCCceeeec--------Cce------eeeecCCCCeEEEEEecCCCEEEEe-----eCCCcE
Q 040361 209 RAP----EKRVRNMQIEAPRKDYVIVE--------TPF------HILCGHDDIITCLYVSVELDIVISG-----SKDGTC 265 (413)
Q Consensus 209 ~~~----~~~~~~~~~~~~~~~~~~~~--------~~~------~~~~~h~~~i~~~~~~~~~~~l~s~-----~~dg~i 265 (413)
+.. .+..+....+...+...+-+ ..+ .....+.. =+.+.|--||+++++. .....|
T Consensus 146 ~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~-~~~IsWRgDg~~fAVs~~~~~~~~Rki 224 (1265)
T KOG1920|consen 146 KPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDH-KTSISWRGDGEYFAVSFVESETGTRKI 224 (1265)
T ss_pred cccccccccccccceecccccceeeecchhhhcccccccccccccchhhccC-CceEEEccCCcEEEEEEEeccCCceeE
Confidence 100 00000111111111111110 000 00011222 2468899999998873 223789
Q ss_pred EEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEEC---CCCeEEEEEeCCceeee----eec-CCceeEEEecCCCC
Q 040361 266 VFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGD---DDLSLHLFSINGKHLAS----SES-NGRLNCLELSACGQ 337 (413)
Q Consensus 266 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~i~d~~~~~~~~----~~~-~~~i~~~~~s~~~~ 337 (413)
++||-+ |. +.....+....-.+++|-|.|..+++-. .|+.|.+|.-+|..... ... ...+..++|+.++.
T Consensus 225 rV~drE-g~-Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sd 302 (1265)
T KOG1920|consen 225 RVYDRE-GA-LNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSD 302 (1265)
T ss_pred EEeccc-ch-hhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCC
Confidence 999976 43 2233223233456799999999988853 45679999988655432 222 23489999999999
Q ss_pred EEEE---eCCCCeEEEEECCCCc--eEEEecCCCCcEEEEEEccC--CeEEEEcCCCeEEEEEe
Q 040361 338 FLVC---GGDQGQIVVRSMNSLE--VVRRYSGVGKIITSLAVTPE--ECFLAGTKDGCLLVYSI 394 (413)
Q Consensus 338 ~l~~---~~~dg~i~v~d~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~dg~i~vw~~ 394 (413)
.|++ ......|++|-..+.. +-..+.-..... +.|+|. .++..-..+|...++++
T Consensus 303 iLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 303 ILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred ceeeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEE
Confidence 9988 5555669999887643 222232222222 677775 23333335555444443
No 313
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=7.3e-07 Score=82.93 Aligned_cols=196 Identities=14% Similarity=0.194 Sum_probs=134.3
Q ss_pred ECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCC-eEEEEEecCCCEEEEeeCC
Q 040361 184 VTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDI-ITCLYVSVELDIVISGSKD 262 (413)
Q Consensus 184 ~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-i~~~~~~~~~~~l~s~~~d 262 (413)
|++.+..++.|+.+|.|.+.+-.-. .+..++.+... |..+....+.++|++.++|
T Consensus 31 ~~s~~~~vvigt~~G~V~~Ln~s~~------------------------~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed 86 (933)
T KOG2114|consen 31 CSSSTGSVVIGTADGRVVILNSSFQ------------------------LIRGFQAYEQSIVQFLYILNKQNFLFSVGED 86 (933)
T ss_pred EcCCCceEEEeeccccEEEecccce------------------------eeehheecchhhhhHhhcccCceEEEEEeec
Confidence 5678889999999999888764221 23556666666 4444444444688887776
Q ss_pred C-----cEEEEEccCC------eEE---EEEe--CC-CCCceeeEEEccCCcEEEEECCCCeEEEEEeC-----Cc-eee
Q 040361 263 G-----TCVFHTLREG------RYV---RSLC--HP-SGSALSKLAASRHGRIVLYGDDDLSLHLFSIN-----GK-HLA 319 (413)
Q Consensus 263 g-----~i~vwd~~~~------~~~---~~~~--~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-----~~-~~~ 319 (413)
+ .+++||++.. +++ +.+. .+ ...++.+++++.+-+.+|+|-.+|.|..+.=+ +. ...
T Consensus 87 ~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~ 166 (933)
T KOG2114|consen 87 EQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDY 166 (933)
T ss_pred CCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceee
Confidence 5 4899998632 233 2221 22 24578899999999999999999999988532 22 222
Q ss_pred eeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCce-EEEecCCCCcEEEEEEccCC-eEEEEcCCCeEEEEEecCC
Q 040361 320 SSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEV-VRRYSGVGKIITSLAVTPEE-CFLAGTKDGCLLVYSIENR 397 (413)
Q Consensus 320 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~-~~~~~~~~~~v~~~~~~~~~-~~l~~~~dg~i~vw~~~~~ 397 (413)
......+|+.+++..+++.++....-..|.+|.+....+ ...+..|..++.|..+++.. ++++++. ..|.+|+....
T Consensus 167 ~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~ 245 (933)
T KOG2114|consen 167 SHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGR 245 (933)
T ss_pred eccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCc
Confidence 245678999999999988733333445799999884442 44467788889999998764 4665544 46999998876
Q ss_pred ccccccc
Q 040361 398 RTSLPRN 404 (413)
Q Consensus 398 ~~~~~~~ 404 (413)
+..+...
T Consensus 246 ~~cfaf~ 252 (933)
T KOG2114|consen 246 GPCFAFE 252 (933)
T ss_pred ceeeeec
Confidence 6555443
No 314
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=2.8e-07 Score=78.14 Aligned_cols=239 Identities=13% Similarity=0.120 Sum_probs=143.1
Q ss_pred ecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCC-CCEEEEccCCCcEEEEEeccccc
Q 040361 132 LGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTD-GSILATGSYDTTVMVWEVIRARA 210 (413)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~dg~i~iw~~~~~~~ 210 (413)
+...+..++++|..+-|+..++.+..|+|.|+++..++..+..| ..+++++|.-| .++|+.|-..|.|.+||++..+.
T Consensus 192 ~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~ 270 (463)
T KOG1645|consen 192 EGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEG 270 (463)
T ss_pred cchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCCc
Confidence 35678889999999877777888999999999999999888888 88999999875 56788888999999999987763
Q ss_pred cccccccceeecCCCceeeecCceeeeec--CCCCeEEEE------EecCCCEEEEeeCCCcEEEEEcc--CCeEEEEEe
Q 040361 211 PEKRVRNMQIEAPRKDYVIVETPFHILCG--HDDIITCLY------VSVELDIVISGSKDGTCVFHTLR--EGRYVRSLC 280 (413)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~i~~~~------~~~~~~~l~s~~~dg~i~vwd~~--~~~~~~~~~ 280 (413)
... .+.+ ...+|..++ ..+.+.+++....+ +..|++. .+.....++
T Consensus 271 ~~~----------------------e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vle 326 (463)
T KOG1645|consen 271 PLM----------------------ELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLE 326 (463)
T ss_pred hHh----------------------hhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccc
Confidence 211 1111 111222222 22334445444433 3445442 222222222
Q ss_pred CCCCCceeeEEEccCCcEEEEECCCC-------eEEE--EEeCCceeeee--ec-CCc------eeEEEecCCCCEEE-E
Q 040361 281 HPSGSALSKLAASRHGRIVLYGDDDL-------SLHL--FSINGKHLASS--ES-NGR------LNCLELSACGQFLV-C 341 (413)
Q Consensus 281 ~~~~~~v~~~~~~~~~~~l~~~~~d~-------~i~i--~d~~~~~~~~~--~~-~~~------i~~~~~s~~~~~l~-~ 341 (413)
....+...++.+.+..+.++...... .+-. -+..|..+-.. .+ .+. -..+.-.++.++++ +
T Consensus 327 le~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~ 406 (463)
T KOG1645|consen 327 LEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVV 406 (463)
T ss_pred cCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEe
Confidence 22223455556655444444433220 0111 11112222111 01 110 01111233445544 4
Q ss_pred eCCCCeEEEEECCCCceEEEecCCCCcEEEEEEccC--CeEEEEcCCCeEEEEEecC
Q 040361 342 GGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPE--ECFLAGTKDGCLLVYSIEN 396 (413)
Q Consensus 342 ~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~dg~i~vw~~~~ 396 (413)
|+..+.+.+||..+++.+.++.- +.+|..++...- +.+|+.-.|..++||..+.
T Consensus 407 gd~tn~lil~D~~s~evvQ~l~~-~epv~Dicp~~~n~~syLa~LTd~~v~Iyk~es 462 (463)
T KOG1645|consen 407 GDSTNELILQDPHSFEVVQTLAL-SEPVLDICPNDTNGSSYLALLTDDRVHIYKNES 462 (463)
T ss_pred cCCcceeEEeccchhheeeeccc-CcceeecceeecCCcchhhheecceEEEEecCC
Confidence 56678899999999999999874 578888876654 4588877888899988654
No 315
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=2.5e-07 Score=79.58 Aligned_cols=231 Identities=16% Similarity=0.109 Sum_probs=156.3
Q ss_pred CCEEEEeecCCCeEEEEEcCC---CcEEEEeecCCCeEEEEEECCCCCEEEEccC-CCcEEEEEecccccccccccccee
Q 040361 145 ENFLITCGNWENSFQVIALND---GRVVQSIRQHRDVVSCVAVTTDGSILATGSY-DTTVMVWEVIRARAPEKRVRNMQI 220 (413)
Q Consensus 145 ~~~l~~~g~~d~~i~i~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~-dg~i~iw~~~~~~~~~~~~~~~~~ 220 (413)
-..++..++.||.++.|.-.. -+.+..+..|...|.+++.+-++..+.|.+. |..++++|+++-....
T Consensus 19 ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~Dmin-------- 90 (558)
T KOG0882|consen 19 KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMIN-------- 90 (558)
T ss_pred hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhh--------
Confidence 334445577799999997533 2344556779999999999999999999877 9999999998765210
Q ss_pred ecCCCceeeecCceeeeecCCCCeEEEEEecCC----CEEEEeeCCCcEEEEEccCCe-EEEEEeCCCCCceeeEEEccC
Q 040361 221 EAPRKDYVIVETPFHILCGHDDIITCLYVSVEL----DIVISGSKDGTCVFHTLREGR-YVRSLCHPSGSALSKLAASRH 295 (413)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~----~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~~v~~~~~~~~ 295 (413)
...+..-.+.+..+ ...| ..-++.-.++.+.++|-.... ...-+..-+..+|..+.+++.
T Consensus 91 -------------miKL~~lPg~a~wv--~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa 155 (558)
T KOG0882|consen 91 -------------MIKLVDLPGFAEWV--TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQA 155 (558)
T ss_pred -------------hcccccCCCceEEe--cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecc
Confidence 11111122222111 1122 223344467899999976443 333344444678999999999
Q ss_pred CcEEEEECCCCeEEEEEeCCc------eee-----------eeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCce
Q 040361 296 GRIVLYGDDDLSLHLFSINGK------HLA-----------SSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEV 358 (413)
Q Consensus 296 ~~~l~~~~~d~~i~i~d~~~~------~~~-----------~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~ 358 (413)
+..+++....|.|.-|..++. .+. .........++.|+|+|..+.+-+.|..|++++..++++
T Consensus 156 ~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGkl 235 (558)
T KOG0882|consen 156 GDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKL 235 (558)
T ss_pred ccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchh
Confidence 999999999999999998741 111 012345678999999999999999999999999998876
Q ss_pred EEEecC--------------------------------CC-CcEEEEEEccCCeEEE-EcCCCeEEEEEecCCcc
Q 040361 359 VRRYSG--------------------------------VG-KIITSLAVTPEECFLA-GTKDGCLLVYSIENRRT 399 (413)
Q Consensus 359 ~~~~~~--------------------------------~~-~~v~~~~~~~~~~~l~-~~~dg~i~vw~~~~~~~ 399 (413)
++.+.. |. ..-+.+.|...|.+|. |+-= -|++.++.+++.
T Consensus 236 vqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~-gikvin~~tn~v 309 (558)
T KOG0882|consen 236 VQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTIL-GIKVINLDTNTV 309 (558)
T ss_pred hhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecce-eEEEEEeecCeE
Confidence 654421 11 1234566777777775 4443 388888887643
No 316
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.77 E-value=3e-08 Score=56.90 Aligned_cols=37 Identities=27% Similarity=0.319 Sum_probs=35.4
Q ss_pred ceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEE
Q 040361 233 PFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHT 269 (413)
Q Consensus 233 ~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd 269 (413)
++..+.+|.+.|++++|+|++++|++++.|+.|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 5788999999999999999999999999999999997
No 317
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.74 E-value=8.8e-09 Score=95.50 Aligned_cols=207 Identities=12% Similarity=0.181 Sum_probs=139.1
Q ss_pred eEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCC--cEEEEEecccccccc
Q 040361 136 CFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDT--TVMVWEVIRARAPEK 213 (413)
Q Consensus 136 ~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg--~i~iw~~~~~~~~~~ 213 (413)
-.+++|+-+.+.|++ |+..|.|++|++.+|.......+|..+|+-+.-+.||..+++.+.-. ...+|++.....
T Consensus 1104 fTc~afs~~~~hL~v-G~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~--- 1179 (1516)
T KOG1832|consen 1104 FTCIAFSGGTNHLAV-GSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGG--- 1179 (1516)
T ss_pred eeeEEeecCCceEEe-eeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccccC---
Confidence 345556655555555 77799999999999999999999999999999999998887765433 478899865321
Q ss_pred ccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCC---CCceeeE
Q 040361 214 RVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPS---GSALSKL 290 (413)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~---~~~v~~~ 290 (413)
+.+.+. .-.++.|+.....-+.|+......+||+.++..+.++..+. ...-+..
T Consensus 1180 -------------------~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a 1236 (1516)
T KOG1832|consen 1180 -------------------PRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLA 1236 (1516)
T ss_pred -------------------cccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhcccc
Confidence 223332 33567787765555566666778999999998776643211 1223667
Q ss_pred EEccCCcEEEEECCCCeEEEEEeCCc-eeeeeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcE
Q 040361 291 AASRHGRIVLYGDDDLSLHLFSINGK-HLASSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKII 369 (413)
Q Consensus 291 ~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v 369 (413)
.|+|+..+++--+ .+||++.. .+..+..-..-..-.|+|.|.-++..++ |||+++.+.++..+.-. -
T Consensus 1237 ~FsP~D~LIlndG-----vLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ld--q 1304 (1516)
T KOG1832|consen 1237 HFSPCDTLILNDG-----VLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLD--Q 1304 (1516)
T ss_pred ccCCCcceEeeCc-----eeeeeccHHHHhhhhhheecccccccCCCceEEeech-----hhhhHHHHHHhcCcccc--c
Confidence 8999888776433 47999843 2222211111123369999998888764 99999988877665322 2
Q ss_pred EEEEEccCCeEE
Q 040361 370 TSLAVTPEECFL 381 (413)
Q Consensus 370 ~~~~~~~~~~~l 381 (413)
..+.|...|.++
T Consensus 1305 c~VtFNstG~Vm 1316 (1516)
T KOG1832|consen 1305 CAVTFNSTGDVM 1316 (1516)
T ss_pred eEEEeccCccch
Confidence 455666666544
No 318
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.71 E-value=7.5e-09 Score=95.93 Aligned_cols=195 Identities=15% Similarity=0.207 Sum_probs=141.9
Q ss_pred cEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEE
Q 040361 167 RVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITC 246 (413)
Q Consensus 167 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 246 (413)
+..+.++.|....+|++|+.+.+.|+.|+..|.|+++++.++. ......+|..+|+-
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~-----------------------~e~s~ncH~SavT~ 1148 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGS-----------------------MEESVNCHQSAVTL 1148 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcc-----------------------cccccccccccccc
Confidence 3456677889999999999999999999999999999999998 45667899999999
Q ss_pred EEEecCCCEEEEeeCCC--cEEEEEccC-CeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCc-eeee--
Q 040361 247 LYVSVELDIVISGSKDG--TCVFHTLRE-GRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGK-HLAS-- 320 (413)
Q Consensus 247 ~~~~~~~~~l~s~~~dg--~i~vwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~-- 320 (413)
+.-+.+|..+++.+.-. -..+|++.+ +...+++.. -.++.|+.....-+.|+......+||+++. .+..
T Consensus 1149 vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~e-----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tyl 1223 (1516)
T KOG1832|consen 1149 VEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFDE-----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYL 1223 (1516)
T ss_pred ccccCCcceeeeeccccCchHHHhccccccCccccccc-----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhc
Confidence 99999998777655443 467999864 445555543 345677776555566666667899999843 2222
Q ss_pred ---eecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEccCCeEE-EEcCCCeEEEEEecC
Q 040361 321 ---SESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFL-AGTKDGCLLVYSIEN 396 (413)
Q Consensus 321 ---~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~dg~i~vw~~~~ 396 (413)
......-++..|+|+.++++ .|| .+||.+..+.++.|......+.. .|+|.|.-+ .-+ -|||+++
T Consensus 1224 t~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~~~~G-~FHP~g~eVIINS-----EIwD~RT 1292 (1516)
T KOG1832|consen 1224 TDTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQFTDYGGG-GFHPSGNEVIINS-----EIWDMRT 1292 (1516)
T ss_pred CcchhhhhhccccccCCCcceEe---eCc--eeeeeccHHHHhhhhhheecccc-cccCCCceEEeec-----hhhhhHH
Confidence 12233347889999998877 455 48999998888877655533333 699997544 444 3899888
Q ss_pred Cccc
Q 040361 397 RRTS 400 (413)
Q Consensus 397 ~~~~ 400 (413)
-+..
T Consensus 1293 F~lL 1296 (1516)
T KOG1832|consen 1293 FKLL 1296 (1516)
T ss_pred HHHH
Confidence 6544
No 319
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.70 E-value=8.7e-05 Score=61.69 Aligned_cols=203 Identities=11% Similarity=0.113 Sum_probs=120.5
Q ss_pred cceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecC-CCeEEEEEECCCCCEEEEccCCCcEEEEEecccccc
Q 040361 133 GSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQH-RDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAP 211 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~ 211 (413)
..++-.+.|.|+.+.|+++....+.|..++. +|+.++.+.-. .+..-.|++..++.++++.-.++.+.++++......
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~ 99 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTS 99 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccc
Confidence 4457889999999999998988899988997 58888877643 355778889888888887767899999998544311
Q ss_pred ccc--cccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccC---CeEEEEEe------
Q 040361 212 EKR--VRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLRE---GRYVRSLC------ 280 (413)
Q Consensus 212 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~---~~~~~~~~------ 280 (413)
... ...+ .+.....+...+-.++|++.++.|+.+-+..-..+|.+.. ...+....
T Consensus 100 ~~~~~~~~~--------------~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~ 165 (248)
T PF06977_consen 100 LDRADVQKI--------------SLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDD 165 (248)
T ss_dssp --EEEEEEE--------------E---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-
T ss_pred cchhhceEE--------------ecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccc
Confidence 100 0000 0111123556689999999888888777777677776653 22221111
Q ss_pred -CCCCCceeeEEEccC-CcEEEEECCCCeEEEEEeCCceeeeeecC----------CceeEEEecCCCCEEEEeCCCCeE
Q 040361 281 -HPSGSALSKLAASRH-GRIVLYGDDDLSLHLFSINGKHLASSESN----------GRLNCLELSACGQFLVCGGDQGQI 348 (413)
Q Consensus 281 -~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~----------~~i~~~~~s~~~~~l~~~~~dg~i 348 (413)
...-..+.+++++|. +.+++.+.....|..+|.+|+.+...... .+...++|.++|++.+++ +-+..
T Consensus 166 ~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlf 244 (248)
T PF06977_consen 166 DKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLF 244 (248)
T ss_dssp HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEE
T ss_pred ccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceE
Confidence 111234788899885 67777888889999999888876654322 257889999999766665 55555
Q ss_pred EEE
Q 040361 349 VVR 351 (413)
Q Consensus 349 ~v~ 351 (413)
++|
T Consensus 245 y~f 247 (248)
T PF06977_consen 245 YRF 247 (248)
T ss_dssp EEE
T ss_pred EEe
Confidence 554
No 320
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.69 E-value=0.00012 Score=66.24 Aligned_cols=108 Identities=16% Similarity=0.166 Sum_probs=76.9
Q ss_pred eeeEEEcc-CCcEEEEE----CCCCe----EEEEEeCCceee-----eeecCCceeEEEecCCCCEEEEeCCCCeEEEEE
Q 040361 287 LSKLAASR-HGRIVLYG----DDDLS----LHLFSINGKHLA-----SSESNGRLNCLELSACGQFLVCGGDQGQIVVRS 352 (413)
Q Consensus 287 v~~~~~~~-~~~~l~~~----~~d~~----i~i~d~~~~~~~-----~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d 352 (413)
..++.|+. ++..+.+. +.+|. -.+|+....++. .......+.+++++|+.+.++.|+.||+|.+||
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD 287 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYD 287 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEE
Confidence 35566665 33444332 22332 345666533332 346788999999999999999999999999999
Q ss_pred CCCCceEEEecCCCCcEEEEEEccCCeEE-EEcCCCeEEEEEecC
Q 040361 353 MNSLEVVRRYSGVGKIITSLAVTPEECFL-AGTKDGCLLVYSIEN 396 (413)
Q Consensus 353 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~dg~i~vw~~~~ 396 (413)
...+... +....-.++.++|+|+|.++ +|+..|.+.+||+.-
T Consensus 288 ~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 288 TTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred cCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 8765332 32345568899999998666 588999999999874
No 321
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.63 E-value=6.3e-06 Score=79.81 Aligned_cols=198 Identities=14% Similarity=0.134 Sum_probs=136.9
Q ss_pred CCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCE
Q 040361 176 RDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDI 255 (413)
Q Consensus 176 ~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~ 255 (413)
.+.|.++.|..+.+.++.+..+|.|.+-|.++.. ......-...|.+++|+||+..
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~------------------------~eivg~vd~GI~aaswS~Dee~ 123 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLE------------------------LEIVGNVDNGISAASWSPDEEL 123 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccc------------------------eeeeeeccCceEEEeecCCCcE
Confidence 3689999999999999999999999999877664 3444455678999999999999
Q ss_pred EEEeeCCCcEEEEEc----cC-------------------CeEEEEEeCCC--------------------CCceeeEEE
Q 040361 256 VISGSKDGTCVFHTL----RE-------------------GRYVRSLCHPS--------------------GSALSKLAA 292 (413)
Q Consensus 256 l~s~~~dg~i~vwd~----~~-------------------~~~~~~~~~~~--------------------~~~v~~~~~ 292 (413)
++..+.++++.+-+- -. |+....+.+.. ...-.++.|
T Consensus 124 l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsW 203 (1265)
T KOG1920|consen 124 LALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISW 203 (1265)
T ss_pred EEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEE
Confidence 998888888776432 11 11111111100 012245889
Q ss_pred ccCCcEEEEE-----CCCCeEEEEEeCCceeee-eecCCceeEEEecCCCCEEEEe---CCCCeEEEEECCC---CceEE
Q 040361 293 SRHGRIVLYG-----DDDLSLHLFSINGKHLAS-SESNGRLNCLELSACGQFLVCG---GDQGQIVVRSMNS---LEVVR 360 (413)
Q Consensus 293 ~~~~~~l~~~-----~~d~~i~i~d~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~---~~dg~i~v~d~~~---~~~~~ 360 (413)
--||+++++. .....|++||-+|..-.. ....+.-.+++|-|.|..+++- ..|+.|.+|.-+. ++...
T Consensus 204 RgDg~~fAVs~~~~~~~~RkirV~drEg~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l 283 (1265)
T KOG1920|consen 204 RGDGEYFAVSFVESETGTRKIRVYDREGALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVL 283 (1265)
T ss_pred ccCCcEEEEEEEeccCCceeEEEecccchhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcccccccc
Confidence 9999999883 333799999998543332 2344556789999999998875 3456799998543 22333
Q ss_pred EecCCCCcEEEEEEccCCeEEEE---cCCC-eEEEEEecCC
Q 040361 361 RYSGVGKIITSLAVTPEECFLAG---TKDG-CLLVYSIENR 397 (413)
Q Consensus 361 ~~~~~~~~v~~~~~~~~~~~l~~---~~dg-~i~vw~~~~~ 397 (413)
.++.....|..++|+.++.+|+. ...+ .|++|-+.+-
T Consensus 284 ~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 284 PFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred CCcccccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence 34434445999999999877753 4444 4999998774
No 322
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.62 E-value=9.5e-05 Score=69.11 Aligned_cols=250 Identities=12% Similarity=0.131 Sum_probs=137.5
Q ss_pred CEEEEeecCCCeEEEEEcCCCcEEEEeecCCCe--EEEEEECC--CCCEEEEcc---------CCCcEEEEEeccccccc
Q 040361 146 NFLITCGNWENSFQVIALNDGRVVQSIRQHRDV--VSCVAVTT--DGSILATGS---------YDTTVMVWEVIRARAPE 212 (413)
Q Consensus 146 ~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~--v~~~~~~~--~~~~l~s~s---------~dg~i~iw~~~~~~~~~ 212 (413)
..+++ ++.++.|+.+|.++|+.+......... -..+.-+| .+..++.++ .+|.+..+|..+++..+
T Consensus 111 ~~V~v-~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W 189 (488)
T cd00216 111 RKVFF-GTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLW 189 (488)
T ss_pred CeEEE-ecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceee
Confidence 44444 555999999999999999877643221 00111122 124455554 36788899998887443
Q ss_pred cccccceeecCCCceeeecCceeeeecCCC-Ce-EEEEEecCCCEEEEeeCCC------------------cEEEEEccC
Q 040361 213 KRVRNMQIEAPRKDYVIVETPFHILCGHDD-II-TCLYVSVELDIVISGSKDG------------------TCVFHTLRE 272 (413)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~i-~~~~~~~~~~~l~s~~~dg------------------~i~vwd~~~ 272 (413)
+.-... +................+.+ .+ ...++.+.+..++.++.++ .|.-.|+.+
T Consensus 190 ~~~~~~----~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~t 265 (488)
T cd00216 190 RFYTTE----PDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADT 265 (488)
T ss_pred EeeccC----CCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCC
Confidence 211100 00000000000000001111 11 1344555566777776665 799999999
Q ss_pred CeEEEEEeCCCCC-----ceeeEEEc----cCCc---EEEEECCCCeEEEEEeC-CceeeeeecCCceeEEEecCCCCEE
Q 040361 273 GRYVRSLCHPSGS-----ALSKLAAS----RHGR---IVLYGDDDLSLHLFSIN-GKHLASSESNGRLNCLELSACGQFL 339 (413)
Q Consensus 273 ~~~~~~~~~~~~~-----~v~~~~~~----~~~~---~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~i~~~~~s~~~~~l 339 (413)
|+....+...... ......+. -++. .+++++.+|.++.+|.+ |+.+-..... ...++.+| ..+
T Consensus 266 G~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~--~~~~~~~~--~~v 341 (488)
T cd00216 266 GKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV--EQPMAYDP--GLV 341 (488)
T ss_pred CCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee--ccccccCC--ceE
Confidence 9999887532110 00111111 1333 67888899999999997 5554433221 12234444 233
Q ss_pred EEe------------------CCCCeEEEEECCCCceEEEecCCC--------CcE--EEEEEccCCeEEEEcCCCeEEE
Q 040361 340 VCG------------------GDQGQIVVRSMNSLEVVRRYSGVG--------KII--TSLAVTPEECFLAGTKDGCLLV 391 (413)
Q Consensus 340 ~~~------------------~~dg~i~v~d~~~~~~~~~~~~~~--------~~v--~~~~~~~~~~~l~~~~dg~i~v 391 (413)
+.+ ..+|.+.-.|+.+++.+.+..... .+. ..+... .+.+++++.||.|+.
T Consensus 342 yv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~-g~~v~~g~~dG~l~a 420 (488)
T cd00216 342 YLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATA-GNLVFAGAADGYFRA 420 (488)
T ss_pred EEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEec-CCeEEEECCCCeEEE
Confidence 332 246789999999999887665321 111 122222 356667889999999
Q ss_pred EEecCCcccccccc
Q 040361 392 YSIENRRTSLPRNV 405 (413)
Q Consensus 392 w~~~~~~~~~~~~~ 405 (413)
+|.++++......+
T Consensus 421 ld~~tG~~lW~~~~ 434 (488)
T cd00216 421 FDATTGKELWKFRT 434 (488)
T ss_pred EECCCCceeeEEEC
Confidence 99999987765443
No 323
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=9e-06 Score=75.39 Aligned_cols=170 Identities=12% Similarity=0.135 Sum_probs=112.1
Q ss_pred EEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCc
Q 040361 147 FLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKD 226 (413)
Q Consensus 147 ~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 226 (413)
.+++-|.-+|.|++++.+. .. .+...|+.. ..+|.+++|||.||+|.|-.+.+.+
T Consensus 50 ~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~----------------- 104 (846)
T KOG2066|consen 50 KFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDD----------------- 104 (846)
T ss_pred ceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCc-----------------
Confidence 3444477799999998753 33 333345544 5689999999999999999988776
Q ss_pred eeeecCceeeeecCCCCeEEEEEecC-----CCEEEEeeCCCcEEEEEccCCeEEE-EEeCCCCCceeeEEEccCCcEEE
Q 040361 227 YVIVETPFHILCGHDDIITCLYVSVE-----LDIVISGSKDGTCVFHTLREGRYVR-SLCHPSGSALSKLAASRHGRIVL 300 (413)
Q Consensus 227 ~~~~~~~~~~~~~h~~~i~~~~~~~~-----~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~ 300 (413)
.... .....++.+++++|+ .+.+++|+..| +.++.-+-..... .......++|.++.|. |+++|
T Consensus 105 ------~~~~-~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIA 174 (846)
T KOG2066|consen 105 ------EITQ-YDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIA 174 (846)
T ss_pred ------ccee-EecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEE
Confidence 1222 235578899999997 45799999998 7777643211111 1122234589999885 67888
Q ss_pred EECCCCeEEEEEeCCceee-eeec-------CCceeEEEecCCCCEEEEeCCCCeEEEEECC
Q 040361 301 YGDDDLSLHLFSINGKHLA-SSES-------NGRLNCLELSACGQFLVCGGDQGQIVVRSMN 354 (413)
Q Consensus 301 ~~~~d~~i~i~d~~~~~~~-~~~~-------~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~ 354 (413)
.++.+| |++||+..+... .... +.....+.|.++. .|+.|-.| +|+|..++
T Consensus 175 Wand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 175 WANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIGWGD-SVKICSIK 233 (846)
T ss_pred EecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEecCC-eEEEEEEe
Confidence 888776 899999854433 2221 1223456676544 45555443 78888877
No 324
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.58 E-value=0.00026 Score=60.67 Aligned_cols=237 Identities=16% Similarity=0.151 Sum_probs=136.9
Q ss_pred EEecCCCCEEEEeec---------CCCeEEEEEcCCCcEEEEeecCCC-eE------EEEEECCCCCEEEEcc--CCCcE
Q 040361 139 TMQTPSENFLITCGN---------WENSFQVIALNDGRVVQSIRQHRD-VV------SCVAVTTDGSILATGS--YDTTV 200 (413)
Q Consensus 139 ~~~~~~~~~l~~~g~---------~d~~i~i~~~~~~~~~~~~~~h~~-~v------~~~~~~~~~~~l~s~s--~dg~i 200 (413)
+..+|+++.+.++.. ....|.+||..+-+....+.--.+ .. ..++++.|+++++..- --.+|
T Consensus 41 ~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SV 120 (342)
T PF06433_consen 41 VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSV 120 (342)
T ss_dssp EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEE
T ss_pred eeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeE
Confidence 445788888776432 334799999999888876653322 21 2244555666555432 23445
Q ss_pred EEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEcc-CCeEEEEE
Q 040361 201 MVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLR-EGRYVRSL 279 (413)
Q Consensus 201 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~-~~~~~~~~ 279 (413)
.|-|+..++ .+..+. -+=+...+-...+-+.+-|.||.+.-..+. .|+.....
T Consensus 121 tVVDl~~~k-----------------------vv~ei~---~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~ 174 (342)
T PF06433_consen 121 TVVDLAAKK-----------------------VVGEID---TPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKS 174 (342)
T ss_dssp EEEETTTTE-----------------------EEEEEE---GTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEE
T ss_pred EEEECCCCc-----------------------eeeeec---CCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEee
Confidence 555655544 111111 111111121122457788889999988887 55554322
Q ss_pred e---CCCCCc-eeeEEEccCCcEEEEECCCCeEEEEEeCCceeeee---e-----------cCCceeEEEecCCCCEEEE
Q 040361 280 C---HPSGSA-LSKLAASRHGRIVLYGDDDLSLHLFSINGKHLASS---E-----------SNGRLNCLELSACGQFLVC 341 (413)
Q Consensus 280 ~---~~~~~~-v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~---~-----------~~~~i~~~~~s~~~~~l~~ 341 (413)
. .....+ ...-++...+..++..+.+|.|+-.|+.+...... . ..+...-+++++..+.|++
T Consensus 175 t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyv 254 (342)
T PF06433_consen 175 TKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYV 254 (342)
T ss_dssp EEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEE
T ss_pred ccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEE
Confidence 1 111222 23334555566677788899999999986543321 0 1134456788876655554
Q ss_pred eCC---CC-------eEEEEECCCCceEEEecCCCCcEEEEEEccCCe--EEE-EcCCCeEEEEEecCCccccc
Q 040361 342 GGD---QG-------QIVVRSMNSLEVVRRYSGVGKIITSLAVTPEEC--FLA-GTKDGCLLVYSIENRRTSLP 402 (413)
Q Consensus 342 ~~~---dg-------~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~-~~~dg~i~vw~~~~~~~~~~ 402 (413)
-.. +| .|.++|+.+++.+.++.. ..++.+|..+.+.+ +++ ...++.|.+||..+++....
T Consensus 255 LMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~ 327 (342)
T PF06433_consen 255 LMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRS 327 (342)
T ss_dssp EEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEE
T ss_pred EecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEee
Confidence 321 21 588889999999999873 34688999998853 445 45789999999999876543
No 325
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.57 E-value=5.1e-06 Score=74.69 Aligned_cols=94 Identities=15% Similarity=0.191 Sum_probs=71.9
Q ss_pred EEEEEcCCCcEEE--Eee-cCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCce
Q 040361 158 FQVIALNDGRVVQ--SIR-QHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPF 234 (413)
Q Consensus 158 i~i~~~~~~~~~~--~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (413)
-.+|++..++... ... .....|.|++++|+...|+.|..||+|.+||...+.
T Consensus 238 ~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~------------------------- 292 (545)
T PF11768_consen 238 SCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGV------------------------- 292 (545)
T ss_pred EEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCe-------------------------
Confidence 3467765554321 111 377899999999999999999999999999986653
Q ss_pred eeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEE
Q 040361 235 HILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYV 276 (413)
Q Consensus 235 ~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 276 (413)
..+....-..+.++|+|+|..+++|+..|.+.+||+.-....
T Consensus 293 t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~ 334 (545)
T PF11768_consen 293 TLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIK 334 (545)
T ss_pred eeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCccc
Confidence 223334456789999999999999999999999998654433
No 326
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.57 E-value=3.8e-06 Score=78.79 Aligned_cols=185 Identities=13% Similarity=0.169 Sum_probs=130.2
Q ss_pred CCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEE
Q 040361 187 DGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCV 266 (413)
Q Consensus 187 ~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~ 266 (413)
++..++.|+....+..+|+.+.+ ..+...-..+.|+-++ .+++.+.+|...|+|.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~-----------------------e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~ 200 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEK-----------------------ETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVF 200 (1118)
T ss_pred CCcceeecchhhheeeeecccce-----------------------eeeeeeccCCceEEEE--ecCcEEEeecccceEE
Confidence 45678888888888899998776 2222322333455444 4678999999999999
Q ss_pred EEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECC---------CCeEEEEEeCC-ceeeeeecCCceeEEEecCC-
Q 040361 267 FHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDD---------DLSLHLFSING-KHLASSESNGRLNCLELSAC- 335 (413)
Q Consensus 267 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------d~~i~i~d~~~-~~~~~~~~~~~i~~~~~s~~- 335 (413)
+-|.++.+.++++..|.+ .+. .|+-.|+.|++++. |.-|++||++. +.+..........-+.|.|.
T Consensus 201 LrD~~s~~~iht~~aHs~-siS--DfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl 277 (1118)
T KOG1275|consen 201 LRDPNSFETIHTFDAHSG-SIS--DFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSL 277 (1118)
T ss_pred eecCCcCceeeeeecccc-cee--eeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccc
Confidence 999999999999998864 454 45667888888764 55689999984 33333333334456677776
Q ss_pred CCEEEEeCCCCeEEEEEC---CCC-ceEEEecCCCCcEEEEEEccCCeEEE-EcCCCeEEEEEecCCccc
Q 040361 336 GQFLVCGGDQGQIVVRSM---NSL-EVVRRYSGVGKIITSLAVTPEECFLA-GTKDGCLLVYSIENRRTS 400 (413)
Q Consensus 336 ~~~l~~~~~dg~i~v~d~---~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~dg~i~vw~~~~~~~~ 400 (413)
...+++.+..|...+-|. .+. .-+..+......+.++.+++++..++ |..+|.|.+|. ...++.
T Consensus 278 ~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa-~~~~P~ 346 (1118)
T KOG1275|consen 278 TTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA-DRPQPQ 346 (1118)
T ss_pred cceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec-CCCCCc
Confidence 457888888999999883 332 11223333445599999999998886 89999999998 443333
No 327
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.56 E-value=0.00014 Score=58.85 Aligned_cols=147 Identities=11% Similarity=0.095 Sum_probs=98.4
Q ss_pred cCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceee
Q 040361 142 TPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIE 221 (413)
Q Consensus 142 ~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~ 221 (413)
.++.+.+++.|+..+.+...|..+|++...-. -..+|.+-+.- -|++++.|...|.+++.+..++.
T Consensus 19 ~~dskT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs------------ 84 (354)
T KOG4649|consen 19 CNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGS------------ 84 (354)
T ss_pred ecCCceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchh------------
Confidence 46678888889989999999999998875432 22333332222 36789999999999999999986
Q ss_pred cCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEE
Q 040361 222 APRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLY 301 (413)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 301 (413)
....+..-+.-=......+++..+..|+.|++.+..|.++..++...+.+ +....+-+..+-...|++
T Consensus 85 -----------~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcg-G~~f~sP~i~~g~~sly~ 152 (354)
T KOG4649|consen 85 -----------QIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCG-GGTFVSPVIAPGDGSLYA 152 (354)
T ss_pred -----------heeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccC-CceeccceecCCCceEEE
Confidence 23333322221122345678899999999999999999999999887765 333344456663334444
Q ss_pred ECCCCeEEEEEeC
Q 040361 302 GDDDLSLHLFSIN 314 (413)
Q Consensus 302 ~~~d~~i~i~d~~ 314 (413)
+...|.+.--+.+
T Consensus 153 a~t~G~vlavt~~ 165 (354)
T KOG4649|consen 153 AITAGAVLAVTKN 165 (354)
T ss_pred EeccceEEEEccC
Confidence 4444555444444
No 328
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.55 E-value=6.4e-05 Score=63.44 Aligned_cols=196 Identities=19% Similarity=0.194 Sum_probs=117.6
Q ss_pred EEecCCCCEEEEeec----CCCeEEEEEcC-CCcEEEEeecCCCeEEEEEECCCCCEEEEccC-------CCcEEEEEec
Q 040361 139 TMQTPSENFLITCGN----WENSFQVIALN-DGRVVQSIRQHRDVVSCVAVTTDGSILATGSY-------DTTVMVWEVI 206 (413)
Q Consensus 139 ~~~~~~~~~l~~~g~----~d~~i~i~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~-------dg~i~iw~~~ 206 (413)
.+|+++|+.|+++-. ..|.|-|||.. +-+.+.++..|.-.-..+.+.||++.|+.+-- .|..++ +++
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kL-Nl~ 134 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKL-NLD 134 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceec-Chh
Confidence 457899999888632 25799999998 67788888887777778889999988877621 122221 222
Q ss_pred cccccccccccceeecCCCceeeecCcee--ee--ecCCCCeEEEEEecCCCEEEEeeCCC-------cEEEEEccCCeE
Q 040361 207 RARAPEKRVRNMQIEAPRKDYVIVETPFH--IL--CGHDDIITCLYVSVELDIVISGSKDG-------TCVFHTLREGRY 275 (413)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~h~~~i~~~~~~~~~~~l~s~~~dg-------~i~vwd~~~~~~ 275 (413)
+.+..... ....+ ...+. .+ ..|...|..+++.++|..++..-..| .+-+++ .++.
T Consensus 135 tM~psL~~-----ld~~s------G~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~ 201 (305)
T PF07433_consen 135 TMQPSLVY-----LDARS------GALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGA 201 (305)
T ss_pred hcCCceEE-----EecCC------CceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCc
Confidence 22210000 00000 11222 23 34777899999999987665544333 233333 3333
Q ss_pred EEEEeCC------CCCceeeEEEccCCcEEEEEC-CCCeEEEEEeCCceeeeeecCCceeEEEecCCCCEEEEeCCCCeE
Q 040361 276 VRSLCHP------SGSALSKLAASRHGRIVLYGD-DDLSLHLFSINGKHLASSESNGRLNCLELSACGQFLVCGGDQGQI 348 (413)
Q Consensus 276 ~~~~~~~------~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i 348 (413)
+..+..+ -...+-+++++.++..+++.+ ..+.+.+||.....+.....-..+..++-.+++ ++++.+ .|.+
T Consensus 202 ~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D~cGva~~~~~-f~~ssG-~G~~ 279 (305)
T PF07433_consen 202 LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPDACGVAPTDDG-FLVSSG-QGQL 279 (305)
T ss_pred ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccCceeeeeecCCc-eEEeCC-CccE
Confidence 3333322 124688999999998776655 567899999986655554444455666666666 555444 4544
Q ss_pred EE
Q 040361 349 VV 350 (413)
Q Consensus 349 ~v 350 (413)
..
T Consensus 280 ~~ 281 (305)
T PF07433_consen 280 IR 281 (305)
T ss_pred EE
Confidence 33
No 329
>KOG1787 consensus Kinase A-anchor protein Neurobeachin and related BEACH and WD40 repeat proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=1.5e-06 Score=85.22 Aligned_cols=203 Identities=22% Similarity=0.229 Sum_probs=100.0
Q ss_pred CCCHHHH-HHHHHHHHhcCCCcccccccCCCCCCCCCCCCCC--ccccCCCccEEEEEecCCCCCCeEEEE-eecC----
Q 040361 1 MEDELQK-SAIEDQIANFGQTPSQIFRKKHPRRGPPIPIAHP--LYFAPGSINLTSIICSTRHQPSGIVYV-GMLD---- 72 (413)
Q Consensus 1 i~d~~~r-~~~~~~i~~fGq~P~qlf~~php~r~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---- 72 (413)
|+||+++ ++++.||..|||+|.|+|.++||+|........+ ..+.........+.....+ +++.+.. +...
T Consensus 718 ~~d~~~~~eai~~~i~~f~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~s-~s~~~v~aan~~~~~~ 796 (1126)
T KOG1787|consen 718 ITDQVLRTEAIEAQIASFGQTPSQLLQEQHPPRASESKLALPSALVFEDASQLDVGIVLKRPS-NSSVVVVAANTLFELC 796 (1126)
T ss_pred cCChhHHHHHHHHHHhhccccchhhhhhccCCcchhccccccccchhhhhhhhhhhhccccCC-CCcceeeccccccccc
Confidence 6899999 7999999999999999999999999876664443 3333332222222221222 2222221 1111
Q ss_pred -CcEEEEecCceEEEEEeeccCC------CCCCce------eeecCCCCccccCCCcC-CCcccCCCCcccceecceeEE
Q 040361 73 -SSIVLVNQGLTLSVKMWLTTQL------QSGGNF------TFSGSQDPFFGVGADIL-SPRNVGSPLAESFELGSQCFT 138 (413)
Q Consensus 73 -~~~~~~~~~~~~~~~~~~~~~~------s~~~~~------l~~~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 138 (413)
...+-...-......+|.+..+ +..+.. ..-.-.+-....+.... ............+.++..++.
T Consensus 797 ~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~r~~~~~~~~~~~l~~~~~~v 876 (1126)
T KOG1787|consen 797 QPTVLGVRSLLEFPRNISSPSVVVKRATEALRGARGSHLDQIPLATDEPLQLTASNQFVARRLRDDISDQSYLVQLNLFV 876 (1126)
T ss_pred ccceeeeeeeEEeehhccccchhhhhhhHhhccCCccccccccccccchhhhhhccceehhhcccchhheeeeeecceEE
Confidence 1111111111222333333100 000000 00000000011110000 011122233344444555555
Q ss_pred EEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCC----CCEEEEccCCCcEEEEEec
Q 040361 139 TMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTD----GSILATGSYDTTVMVWEVI 206 (413)
Q Consensus 139 ~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~~l~s~s~dg~i~iw~~~ 206 (413)
..+-..-..+...+...+.|..++ ++.....-.+|...|++++-.+. ..+.++++.|++|..|-..
T Consensus 877 g~a~~~~~~~~~~~~~~~~v~~~~--~~r~~~~~~~d~~vv~~~ar~~~~l~~~~~~~s~s~D~tI~~~~~s 946 (1126)
T KOG1787|consen 877 GRADNDIIQHPGFGDYSFRVYSTD--SLRMRQSVFRDGDVVTCGARLEQYLAALQYPVSSSEDGTIPLLYWS 946 (1126)
T ss_pred EeccCccccccCccccccceEeee--hhhhccccccccceeeeeecccccccccccccccCCCcceeeeeec
Confidence 544333333333343344444444 55555555568888888887763 4668999999999999886
No 330
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.52 E-value=0.00032 Score=65.60 Aligned_cols=208 Identities=8% Similarity=0.086 Sum_probs=115.2
Q ss_pred CCeEEEEEcCCCcEEEEeecCCCe--------------------E-EEEEECCCCCEEEEccCCC---------------
Q 040361 155 ENSFQVIALNDGRVVQSIRQHRDV--------------------V-SCVAVTTDGSILATGSYDT--------------- 198 (413)
Q Consensus 155 d~~i~i~~~~~~~~~~~~~~h~~~--------------------v-~~~~~~~~~~~l~s~s~dg--------------- 198 (413)
++.+..+|..+|+.+..++..... + ...++.+.+..++.++.++
T Consensus 174 ~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~ 253 (488)
T cd00216 174 RGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNL 253 (488)
T ss_pred CcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCC
Confidence 678999999999998777542110 1 1233444556777777665
Q ss_pred ---cEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCe-EEEEEecCCC---EEEEeeCCCcEEEEEcc
Q 040361 199 ---TVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDII-TCLYVSVELD---IVISGSKDGTCVFHTLR 271 (413)
Q Consensus 199 ---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i-~~~~~~~~~~---~l~s~~~dg~i~vwd~~ 271 (413)
.|.-+|..+++..++..... . ....+.....++ ..+. .-++. .++.++.+|.+...|.+
T Consensus 254 ~~~~l~Ald~~tG~~~W~~~~~~------~-------~~~~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~ 319 (488)
T cd00216 254 YTDSIVALDADTGKVKWFYQTTP------H-------DLWDYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRT 319 (488)
T ss_pred ceeeEEEEcCCCCCEEEEeeCCC------C-------CCcccccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECC
Confidence 68888888887433210000 0 000000111111 0110 01232 57788899999999999
Q ss_pred CCeEEEEEeCCCCCceeeEEEccCCcEEEEE------------------CCCCeEEEEEeC-CceeeeeecC--------
Q 040361 272 EGRYVRSLCHPSGSALSKLAASRHGRIVLYG------------------DDDLSLHLFSIN-GKHLASSESN-------- 324 (413)
Q Consensus 272 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~------------------~~d~~i~i~d~~-~~~~~~~~~~-------- 324 (413)
+|+.+....... ..++.+| ..++.+ ..+|.+...|+. ++.+-.....
T Consensus 320 tG~~~W~~~~~~----~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~ 393 (488)
T cd00216 320 TGKLISARPEVE----QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNI 393 (488)
T ss_pred CCcEeeEeEeec----cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCcccccccc
Confidence 999988765321 1123333 223222 235677777876 4444433222
Q ss_pred -CceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEE-EEEccCCeEEE
Q 040361 325 -GRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITS-LAVTPEECFLA 382 (413)
Q Consensus 325 -~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~ 382 (413)
.+...-.....+..+++++.||.|+.+|..+|+.+.+++........ +.+..++++..
T Consensus 394 g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~~~~~a~P~~~~~~g~~yv 453 (488)
T cd00216 394 GFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFRTPSGIQATPMTYEVNGKQYV 453 (488)
T ss_pred CCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEEECCCCceEcCEEEEeCCEEEE
Confidence 11111111125678999999999999999999999887643222122 22444665444
No 331
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.51 E-value=4.8e-06 Score=77.56 Aligned_cols=107 Identities=14% Similarity=0.111 Sum_probs=80.7
Q ss_pred EecCCCCEEEEeec---CCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccc
Q 040361 140 MQTPSENFLITCGN---WENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVR 216 (413)
Q Consensus 140 ~~~~~~~~l~~~g~---~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~ 216 (413)
.|.|....++++.. ..|+|.||- ++|++..... ..-.+++++|+|..-.|+.|-.-|.+.+|...+.+
T Consensus 22 SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e------- 92 (1416)
T KOG3617|consen 22 SWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE------- 92 (1416)
T ss_pred ccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCce-------
Confidence 35555555554332 357888883 5666544332 22345679999998889999999999999987766
Q ss_pred cceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEcc
Q 040361 217 NMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLR 271 (413)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~ 271 (413)
.......|..+|..+.|+++|..++++..-|.+.+|...
T Consensus 93 ----------------~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 93 ----------------THTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ----------------eeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 344456799999999999999999999999999999765
No 332
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=6.3e-06 Score=70.25 Aligned_cols=218 Identities=11% Similarity=0.121 Sum_probs=131.6
Q ss_pred EEEEEcCCCcEEEEeecCCCeEEEEEECCCCC-EEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceee
Q 040361 158 FQVIALNDGRVVQSIRQHRDVVSCVAVTTDGS-ILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHI 236 (413)
Q Consensus 158 i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (413)
++..+..+.+..+.+.+|...|..++|+|..+ ++..++.+..|+|.|+++.. .+..
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~-----------------------~vss 231 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC-----------------------VVSS 231 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccce-----------------------eeeh
Confidence 66777666677777788999999999999766 78889999999999998876 4556
Q ss_pred eecCCCCeEEEEEecCC-CEEEEeeCCCcEEEEEccCCeE-EEEEeC-CCCCceeeEEE------ccCCcEEEEECCCCe
Q 040361 237 LCGHDDIITCLYVSVEL-DIVISGSKDGTCVFHTLREGRY-VRSLCH-PSGSALSKLAA------SRHGRIVLYGDDDLS 307 (413)
Q Consensus 237 ~~~h~~~i~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~-~~~~~~-~~~~~v~~~~~------~~~~~~l~~~~~d~~ 307 (413)
+..| ..+++++|.-|. +++..|...|.|.+||++..+- +..+.. -...+|..++. .+.+.+++....+
T Consensus 232 y~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~-- 308 (463)
T KOG1645|consen 232 YIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV-- 308 (463)
T ss_pred eecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--
Confidence 6666 789999998765 5788899999999999986542 222211 11123443333 2234455544443
Q ss_pred EEEEEeCCc-----eeeeeecCCceeEEEecCCCCEEEEeCCCC-------eEEE-EECCCCceEEEec-CC-CCc----
Q 040361 308 LHLFSINGK-----HLASSESNGRLNCLELSACGQFLVCGGDQG-------QIVV-RSMNSLEVVRRYS-GV-GKI---- 368 (413)
Q Consensus 308 i~i~d~~~~-----~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-------~i~v-~d~~~~~~~~~~~-~~-~~~---- 368 (413)
+..|++... .+......+...++++.+..+.++...... .|-. -|-.+|..+..-+ ++ .+.
T Consensus 309 l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl 388 (463)
T KOG1645|consen 309 LQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKL 388 (463)
T ss_pred hhhhhhhccccCCCcccccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCccccc
Confidence 556766521 112234456667777776555554433220 1111 1223444432211 12 111
Q ss_pred --EEEEEEccCCeEEE--EcCCCeEEEEEecCCcccc
Q 040361 369 --ITSLAVTPEECFLA--GTKDGCLLVYSIENRRTSL 401 (413)
Q Consensus 369 --v~~~~~~~~~~~l~--~~~dg~i~vw~~~~~~~~~ 401 (413)
-..+.=.++..++. +...+.+.+||..+.+...
T Consensus 389 ~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ 425 (463)
T KOG1645|consen 389 STTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVVQ 425 (463)
T ss_pred ccccceeccccccEEEEecCCcceeEEeccchhheee
Confidence 01111233444443 7777889999999876543
No 333
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.49 E-value=0.00047 Score=62.74 Aligned_cols=218 Identities=12% Similarity=0.138 Sum_probs=120.8
Q ss_pred eeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccc
Q 040361 135 QCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKR 214 (413)
Q Consensus 135 ~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~ 214 (413)
....+.++|+|+.++++| ||.-.|+.....+.... +.-...+|.+.+ .+|+-...++|.++.--...
T Consensus 34 ~p~~ls~npngr~v~V~g--~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~----- 100 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLVCG--DGEYEIYTALAWRNKAF-----GSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNE----- 100 (443)
T ss_dssp --SEEEE-TTSSEEEEEE--TTEEEEEETTTTEEEEE-----EE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE------
T ss_pred CCeeEEECCCCCEEEEEc--CCEEEEEEccCCccccc-----CceeEEEEecCc-cEEEEECCCeEEEEEcCccc-----
Confidence 356788899999999977 89999998544444322 334467888854 56666668889996322222
Q ss_pred cccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEcc
Q 040361 215 VRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASR 294 (413)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~ 294 (413)
....+.. ...+..+-. |.+|+..+. +.|.+||..+++.++++... .|..+.|++
T Consensus 101 ------------------~~k~i~~-~~~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~---~vk~V~Ws~ 154 (443)
T PF04053_consen 101 ------------------VVKSIKL-PFSVEKIFG---GNLLGVKSS-DFICFYDWETGKLIRRIDVS---AVKYVIWSD 154 (443)
T ss_dssp ------------------TT------SS-EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS----E-EEEEE-T
T ss_pred ------------------cceEEcC-CcccceEEc---CcEEEEECC-CCEEEEEhhHcceeeEEecC---CCcEEEEEC
Confidence 1111111 112333322 666666654 48999999999999999754 489999999
Q ss_pred CCcEEEEECCCCeEEEEEeCCc------------eeeeeec-CCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEE
Q 040361 295 HGRIVLYGDDDLSLHLFSINGK------------HLASSES-NGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRR 361 (413)
Q Consensus 295 ~~~~l~~~~~d~~i~i~d~~~~------------~~~~~~~-~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~ 361 (413)
++.+++..+.+ .+.+++.+.. .+..... ...|.+..|..+ .++-.+.. .++.+ ..|+. ..
T Consensus 155 ~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkYl--~~Ge~-~~ 227 (443)
T PF04053_consen 155 DGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKYL--VNGET-GI 227 (443)
T ss_dssp TSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEEE--ETTEE-EE
T ss_pred CCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEEE--EcCCc-ce
Confidence 99999998865 6888877644 3333333 678889999655 44444444 66663 33332 22
Q ss_pred ecCCCCcEEEEEEccC-CeEEEEcCCCeEEEEEecCCc
Q 040361 362 YSGVGKIITSLAVTPE-ECFLAGTKDGCLLVYSIENRR 398 (413)
Q Consensus 362 ~~~~~~~v~~~~~~~~-~~~l~~~~dg~i~vw~~~~~~ 398 (413)
+..-..++.=+.+.+. +++.....|+.+..+.+....
T Consensus 228 i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~~ 265 (443)
T PF04053_consen 228 IAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELDLSE 265 (443)
T ss_dssp EEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--HHH
T ss_pred EEEcCCceEEEEEEccCCEEEEEECCCCEEEEEECHHH
Confidence 3323456667777775 567778889999988876543
No 334
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.46 E-value=0.00016 Score=60.19 Aligned_cols=197 Identities=13% Similarity=0.105 Sum_probs=113.6
Q ss_pred EeecCCCeEEEEEECCCCC-EEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecC-CCCeEEEE
Q 040361 171 SIRQHRDVVSCVAVTTDGS-ILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGH-DDIITCLY 248 (413)
Q Consensus 171 ~~~~h~~~v~~~~~~~~~~-~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~i~~~~ 248 (413)
.+.+-...+..++|.|+.+ ++++....+.|..++.+ ++ .+..+.-. .+..-.++
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~-----------------------vlr~i~l~g~~D~EgI~ 71 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GK-----------------------VLRRIPLDGFGDYEGIT 71 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--------------------------EEEEEE-SS-SSEEEEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CC-----------------------EEEEEeCCCCCCceeEE
Confidence 4455556799999999755 55566667777666653 33 22222211 35577888
Q ss_pred EecCCCEEEEeeCCCcEEEEEccCCe------EEEEEe--C--CCCCceeeEEEccCCcEEEEECCCCeEEEEEeCC---
Q 040361 249 VSVELDIVISGSKDGTCVFHTLREGR------YVRSLC--H--PSGSALSKLAASRHGRIVLYGDDDLSLHLFSING--- 315 (413)
Q Consensus 249 ~~~~~~~l~s~~~dg~i~vwd~~~~~------~~~~~~--~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~--- 315 (413)
+..++.++++--+++.+.++++.... ....+. . ..+..+-.++|++.++.++++-...-..+|.+++
T Consensus 72 y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~ 151 (248)
T PF06977_consen 72 YLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPG 151 (248)
T ss_dssp E-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-
T ss_pred EECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccC
Confidence 88888777776678999999883221 112222 1 2345688999999877777776666666776653
Q ss_pred -ceeeee---------ecCCceeEEEecCC-CCEEEEeCCCCeEEEEECCCCceEEEecCCC---------CcEEEEEEc
Q 040361 316 -KHLASS---------ESNGRLNCLELSAC-GQFLVCGGDQGQIVVRSMNSLEVVRRYSGVG---------KIITSLAVT 375 (413)
Q Consensus 316 -~~~~~~---------~~~~~i~~~~~s~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~---------~~v~~~~~~ 375 (413)
..+... .....+.+++++|. +.+++.+..+..|..+| .+|+.+..+.-.. ...-.|+|.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d 230 (248)
T PF06977_consen 152 GFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFD 230 (248)
T ss_dssp SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-
T ss_pred ccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEEC
Confidence 111110 12345788999986 56777888899999999 6677766554222 247889999
Q ss_pred cCCeEEEEcCCCeEEEE
Q 040361 376 PEECFLAGTKDGCLLVY 392 (413)
Q Consensus 376 ~~~~~l~~~~dg~i~vw 392 (413)
++|.+...++-+..+++
T Consensus 231 ~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 231 PDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp TT--EEEEETTTEEEEE
T ss_pred CCCCEEEEcCCceEEEe
Confidence 99988877777766655
No 335
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.45 E-value=0.00056 Score=63.53 Aligned_cols=185 Identities=12% Similarity=0.060 Sum_probs=118.1
Q ss_pred ecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCc--EEEEEeccccccccccccc
Q 040361 141 QTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTT--VMVWEVIRARAPEKRVRNM 218 (413)
Q Consensus 141 ~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~--i~iw~~~~~~~~~~~~~~~ 218 (413)
+.++|+.+.......+.+.+.|.++.+....+.-- +....++++++|+++++.+.+.. ..+-.+.....
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~-------- 270 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAER-------- 270 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccC--------
Confidence 34567666555556778889999988887776542 24467889999999988764221 11111111110
Q ss_pred eeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccC-----CeEEEEEeCCCCCceeeEEEc
Q 040361 219 QIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLRE-----GRYVRSLCHPSGSALSKLAAS 293 (413)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~-----~~~~~~~~~~~~~~v~~~~~~ 293 (413)
+ .+..+. -..+ -++.++|++... .++.|.+.|.++ ...+..+..+ .....+.++
T Consensus 271 -------d------~~vvfn--i~~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVG--KsPHGV~vS 329 (635)
T PRK02888 271 -------D------WVVVFN--IARI--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVP--KNPHGVNTS 329 (635)
T ss_pred -------c------eEEEEc--hHHH--HHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECC--CCccceEEC
Confidence 0 000000 0000 023346665554 367899999988 4555556543 467889999
Q ss_pred cCCcEEEEECC-CCeEEEEEeCCce-------------eeeeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCC
Q 040361 294 RHGRIVLYGDD-DLSLHLFSINGKH-------------LASSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNS 355 (413)
Q Consensus 294 ~~~~~l~~~~~-d~~i~i~d~~~~~-------------~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~ 355 (413)
|||+++++++. +.++.++|+.... .............+|.++|+...+-.-|..|..|++..
T Consensus 330 PDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 330 PDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 99999887765 7899999997422 12223344556788999998877888899999999875
No 336
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.45 E-value=7.6e-08 Score=86.39 Aligned_cols=198 Identities=16% Similarity=0.179 Sum_probs=132.9
Q ss_pred CeEEEEEECCC--CCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEec-CC
Q 040361 177 DVVSCVAVTTD--GSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSV-EL 253 (413)
Q Consensus 177 ~~v~~~~~~~~--~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~-~~ 253 (413)
..+.|+++.-+ ...++.|..+|.|.+-.++..... ......+|....++++|++ |.
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS---------------------s~E~tp~~ar~Ct~lAwneLDt 115 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS---------------------SAEVTPGYARPCTSLAWNELDT 115 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccc---------------------cceecccccccccccccccccH
Confidence 44566666543 356888999999999888765421 1234567888899999988 55
Q ss_pred CEEEEee----CCCcEEEEEccCC--eEEE--EEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCceeeee-ecC
Q 040361 254 DIVISGS----KDGTCVFHTLREG--RYVR--SLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKHLASS-ESN 324 (413)
Q Consensus 254 ~~l~s~~----~dg~i~vwd~~~~--~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~ 324 (413)
+.||+|- .|..+.+||+.++ .+.. .+.........+++|..+.+++++|.....++++|++....... -..
T Consensus 116 n~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnT 195 (783)
T KOG1008|consen 116 NHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNT 195 (783)
T ss_pred HHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhh
Confidence 6676663 3567999999876 2222 22222234566889998899999999999999999984332221 122
Q ss_pred CceeEEEecC-CCCEEEEeCCCCeEEEEE-CCCC-ceEEEecCCC----CcEEEEEEccC--CeEEEE-cCCCeEEEEEe
Q 040361 325 GRLNCLELSA-CGQFLVCGGDQGQIVVRS-MNSL-EVVRRYSGVG----KIITSLAVTPE--ECFLAG-TKDGCLLVYSI 394 (413)
Q Consensus 325 ~~i~~~~~s~-~~~~l~~~~~dg~i~v~d-~~~~-~~~~~~~~~~----~~v~~~~~~~~--~~~l~~-~~dg~i~vw~~ 394 (413)
..+..+.++| .+.|++.-. ||.|-+|| .++- .++..+.... ..+..++|.|. |.+++. -..++|+.+++
T Consensus 196 k~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi 274 (783)
T KOG1008|consen 196 KYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDI 274 (783)
T ss_pred hhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecc
Confidence 3566778888 667776655 99999999 3332 2233332122 24899999997 556654 45688999998
Q ss_pred cC
Q 040361 395 EN 396 (413)
Q Consensus 395 ~~ 396 (413)
..
T Consensus 275 ~~ 276 (783)
T KOG1008|consen 275 CV 276 (783)
T ss_pred cc
Confidence 64
No 337
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.43 E-value=0.00017 Score=64.57 Aligned_cols=248 Identities=14% Similarity=0.092 Sum_probs=128.7
Q ss_pred cceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEee-cC----------------CCeEEEEEECCCCCEEEEcc
Q 040361 133 GSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIR-QH----------------RDVVSCVAVTTDGSILATGS 195 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~-~h----------------~~~v~~~~~~~~~~~l~s~s 195 (413)
........|+|+|+.++.+- ++.|++++..+++..+.-. +- -+.-..+.|+||+++|+...
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~--~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~ 119 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR--DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLR 119 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE--TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEE
T ss_pred ccccccceeecCCCeeEEEe--cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEE
Confidence 35567788999999999876 7899999987774443221 10 11235688999999998876
Q ss_pred CC-CcEEEEEecccccccc---ccccceeecCCCceee-------e-cCceee------eecCCCCeEEEEEecCCCEEE
Q 040361 196 YD-TTVMVWEVIRARAPEK---RVRNMQIEAPRKDYVI-------V-ETPFHI------LCGHDDIITCLYVSVELDIVI 257 (413)
Q Consensus 196 ~d-g~i~iw~~~~~~~~~~---~~~~~~~~~~~~~~~~-------~-~~~~~~------~~~h~~~i~~~~~~~~~~~l~ 257 (413)
.| ..|..+.+........ .+.......+...... . ...... +..-...+..+.|.++++.++
T Consensus 120 ~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~ 199 (353)
T PF00930_consen 120 FDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLW 199 (353)
T ss_dssp EE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEE
T ss_pred ECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEE
Confidence 43 4555555543322211 1111111111000000 0 000001 112344578899999988333
Q ss_pred --EeeCCC---cEEEEEccCCeEEEEEeCCCCCce---eeEEEc-cCC-cEEEEECCCCe--EEEEEeCCceeeee-ecC
Q 040361 258 --SGSKDG---TCVFHTLREGRYVRSLCHPSGSAL---SKLAAS-RHG-RIVLYGDDDLS--LHLFSINGKHLASS-ESN 324 (413)
Q Consensus 258 --s~~~dg---~i~vwd~~~~~~~~~~~~~~~~~v---~~~~~~-~~~-~~l~~~~~d~~--i~i~d~~~~~~~~~-~~~ 324 (413)
...++. .+.+.|..++.............+ ....+. +++ .++.....+|. |++++..+...... ...
T Consensus 200 ~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~ 279 (353)
T PF00930_consen 200 VQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGD 279 (353)
T ss_dssp EEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SS
T ss_pred EEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCc
Confidence 333333 466778877655433332222222 244444 544 45555556664 55556666554443 344
Q ss_pred CceeE-EEecCCCCEEE-EeCCC----CeEEEEECCCCceEEEecCCCCcEEEEEEccCCeEEE
Q 040361 325 GRLNC-LELSACGQFLV-CGGDQ----GQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFLA 382 (413)
Q Consensus 325 ~~i~~-~~~s~~~~~l~-~~~~d----g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 382 (413)
..|.. +.++++++.|+ ++..+ ..|+.-++..+..+..+......-..+.|+|++++++
T Consensus 280 ~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v 343 (353)
T PF00930_consen 280 WEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYV 343 (353)
T ss_dssp S-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEE
T ss_pred eeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEE
Confidence 45644 67888876544 55542 2566666663344555654333336899999987664
No 338
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.40 E-value=0.00049 Score=62.55 Aligned_cols=199 Identities=15% Similarity=0.118 Sum_probs=104.6
Q ss_pred eEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceee
Q 040361 157 SFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHI 236 (413)
Q Consensus 157 ~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (413)
.|.||+. .|+.+..+.--.+.|.++.|+.+. .|+.-..||.+++||+.... ...+. ..+..
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~--~fsl~---------------~~i~~ 122 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEF--QFSLG---------------EEIEE 122 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCce--eechh---------------hhccc
Confidence 5999986 677777776555899999998764 56666789999999985322 00000 01111
Q ss_pred eecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCe-EEEEEe-CCCC-------Cceee-EEEccCCcEEEEECCCC
Q 040361 237 LCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGR-YVRSLC-HPSG-------SALSK-LAASRHGRIVLYGDDDL 306 (413)
Q Consensus 237 ~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~-~~~~-------~~v~~-~~~~~~~~~l~~~~~d~ 306 (413)
..-.+..+....+..+|-.+++ .++.+.+.+-.... ..+.+. .+.. ..... ..++.+....+....++
T Consensus 123 ~~v~e~~i~~~~~~~~GivvLt--~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~ 200 (410)
T PF04841_consen 123 EKVLECRIFAIWFYKNGIVVLT--GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGE 200 (410)
T ss_pred cCcccccccccccCCCCEEEEC--CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCC
Confidence 1112222333333334422333 34444443221111 111111 0100 00000 12333333333333344
Q ss_pred eEEEEEeCCceeeeeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCC-CCcEEEEEEccCC
Q 040361 307 SLHLFSINGKHLASSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGV-GKIITSLAVTPEE 378 (413)
Q Consensus 307 ~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-~~~v~~~~~~~~~ 378 (413)
.+.+.+-... ......+++..+++||+|+++|.-..+|.+.+.+..-.+...++... ......+.|.-+.
T Consensus 201 ~i~~i~~~~~--~~i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 201 TIYIIDENSF--KQIDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND 271 (410)
T ss_pred EEEEEEcccc--ccccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence 4443333211 01223468999999999999999999999999887655555555433 3455666666543
No 339
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.40 E-value=0.00034 Score=61.81 Aligned_cols=214 Identities=15% Similarity=0.242 Sum_probs=125.2
Q ss_pred CeEEEEEcCCCcEEEEeecC-CCeEEEEE---ECCC----CCEEEEccC----------CCcEEEEEecccccccccccc
Q 040361 156 NSFQVIALNDGRVVQSIRQH-RDVVSCVA---VTTD----GSILATGSY----------DTTVMVWEVIRARAPEKRVRN 217 (413)
Q Consensus 156 ~~i~i~~~~~~~~~~~~~~h-~~~v~~~~---~~~~----~~~l~s~s~----------dg~i~iw~~~~~~~~~~~~~~ 217 (413)
..|++.|..+.+.+..+.-. ...+.+++ +..+ ..+|+.|+. .|.|.++++.........+
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l-- 79 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKL-- 79 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EE--
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEE--
Confidence 36888998888887766542 33444444 4332 567777643 2889999998741000000
Q ss_pred ceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCe-EEEEEeCCCCCceeeEEEccCC
Q 040361 218 MQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGR-YVRSLCHPSGSALSKLAASRHG 296 (413)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~ 296 (413)
....-....++|++++-. ++. ++.+. .+.|.+|++...+ ....-..+....+.++... +
T Consensus 80 ---------------~~i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~ 139 (321)
T PF03178_consen 80 ---------------KLIHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--K 139 (321)
T ss_dssp ---------------EEEEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--T
T ss_pred ---------------EEEEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--c
Confidence 011123457889998876 333 44433 5889999998887 5544443333345555444 6
Q ss_pred cEEEEECCCCeEEEEEeC--Cceeeee---ecCCceeEEEecCCCCEEEEeCCCCeEEEEECCC-------Cc----eEE
Q 040361 297 RIVLYGDDDLSLHLFSIN--GKHLASS---ESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNS-------LE----VVR 360 (413)
Q Consensus 297 ~~l~~~~~d~~i~i~d~~--~~~~~~~---~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~-------~~----~~~ 360 (413)
+++++|.....+.++..+ ...+... .....++++.|-++++.+++++.+|.+.++.... +. ...
T Consensus 140 ~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~ 219 (321)
T PF03178_consen 140 NYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERIS 219 (321)
T ss_dssp TEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEE
T ss_pred cEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEE
Confidence 689999888888877544 4434332 2455688888887778999999999999997752 22 223
Q ss_pred EecCCCCcEEEE---EEccC--C-------eEEEEcCCCeEEEE
Q 040361 361 RYSGVGKIITSL---AVTPE--E-------CFLAGTKDGCLLVY 392 (413)
Q Consensus 361 ~~~~~~~~v~~~---~~~~~--~-------~~l~~~~dg~i~vw 392 (413)
.+. ....|+++ .+.|. + .++-++.+|.|.+.
T Consensus 220 ~f~-lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 220 SFH-LGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEE--SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EEE-CCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 333 34567777 55551 1 25568899998844
No 340
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.39 E-value=0.00024 Score=65.39 Aligned_cols=236 Identities=17% Similarity=0.152 Sum_probs=124.2
Q ss_pred EEEEecCCCCEEEEeecCCCeEEEEEcCCCcEE-----EEe-ecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccc
Q 040361 137 FTTMQTPSENFLITCGNWENSFQVIALNDGRVV-----QSI-RQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARA 210 (413)
Q Consensus 137 ~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~-----~~~-~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~ 210 (413)
..+...++.++++++|+..|.|.++-++.+..- ... ..|...|+|++|++|+..+++|...|.|.+-.++....
T Consensus 79 ~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~ 158 (726)
T KOG3621|consen 79 TCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQA 158 (726)
T ss_pred EEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhh
Confidence 333444556667777887899999987654321 111 23789999999999999999999999999998877210
Q ss_pred cccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEE-eCCCCC-cee
Q 040361 211 PEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSL-CHPSGS-ALS 288 (413)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~-~v~ 288 (413)
. ....+.+..-.+.|..+.... +.+|++.... ..+.+.+.+. ++.+ +.+..+ .-.
T Consensus 159 ~-------------------~~~~q~il~~ds~IVQlD~~q-~~LLVStl~r--~~Lc~tE~et-i~QIG~k~R~~~~~~ 215 (726)
T KOG3621|consen 159 F-------------------LSKSQEILSEDSEIVQLDYLQ-SYLLVSTLTR--CILCQTEAET-ITQIGKKPRKSLIDF 215 (726)
T ss_pred h-------------------ccccceeeccCcceEEeeccc-ceehHhhhhh--hheeecchhH-HHHhcCCCcCCcccc
Confidence 0 012334445566777776643 2333333322 2344443332 1111 111111 122
Q ss_pred eEEEccC-----CcEEEEECCCCeEEEEEeC--CceeeeeecC--------------C-----------ceeEEEec---
Q 040361 289 KLAASRH-----GRIVLYGDDDLSLHLFSIN--GKHLASSESN--------------G-----------RLNCLELS--- 333 (413)
Q Consensus 289 ~~~~~~~-----~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~--------------~-----------~i~~~~~s--- 333 (413)
..+|-|. ...|+++--. .++|..+ |....+.... . .-..+.|.
T Consensus 216 GACF~~g~~~~q~~~IycaRPG--~RlWead~~G~V~~Thqfk~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~ 293 (726)
T KOG3621|consen 216 GACFFPGQCKAQKPQIYCARPG--LRLWEADFAGEVIKTHQFKDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKSS 293 (726)
T ss_pred ceEEeeccccCCCceEEEecCC--CceEEeecceeEEEeeehhhhhccCCCCcccCCCcCCccccCCCCCccccccceeE
Confidence 3344332 2344444333 4566554 5444331100 0 00111111
Q ss_pred -CCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEccCCeEEEEcCCCeEEEEEecCCccc
Q 040361 334 -ACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFLAGTKDGCLLVYSIENRRTS 400 (413)
Q Consensus 334 -~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~dg~i~vw~~~~~~~~ 400 (413)
-.+..+++-++-| |+|+|.++.+.+.-.+ -...|..++...+ .+++-..|+.+++..+.+....
T Consensus 294 ~l~~~~vLa~te~G-iyv~d~~~~~v~l~se-~~~DI~dVs~~~n-eiFvL~~d~~l~~~sv~s~qr~ 358 (726)
T KOG3621|consen 294 TLHSDRVLAWTEVG-IYVFDSNNSQVYLWSE-GGHDILDVSHCGN-EIFVLNLDRGLKVESVASRQRK 358 (726)
T ss_pred EeecceEEEeecce-EEEEEeccceEEEeec-CCCceeEEeecCc-eEEEEecCCceeEEEeehhHHH
Confidence 0122333333334 8899988766554333 2344666665533 3555555667787777765443
No 341
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.39 E-value=0.00014 Score=67.31 Aligned_cols=221 Identities=10% Similarity=0.027 Sum_probs=128.9
Q ss_pred CCCEEEEeecCCCeEEEEEcCCCcEEEEeec-CCCeEEEEEEC--CCCCEEEEccC-------CC-----------cEEE
Q 040361 144 SENFLITCGNWENSFQVIALNDGRVVQSIRQ-HRDVVSCVAVT--TDGSILATGSY-------DT-----------TVMV 202 (413)
Q Consensus 144 ~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~-h~~~v~~~~~~--~~~~~l~s~s~-------dg-----------~i~i 202 (413)
||+++++-.-.+..|-..++...++-+.++- ....+..+++. |+..+++.+++ || .+.+
T Consensus 140 dGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSv 219 (635)
T PRK02888 140 DGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTA 219 (635)
T ss_pred ceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEE
Confidence 6777777554466777777776665554432 22334444443 45455554432 33 3333
Q ss_pred EEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCC----CcEEEEEccCCeEEEE
Q 040361 203 WEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKD----GTCVFHTLREGRYVRS 278 (413)
Q Consensus 203 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~~~~ 278 (413)
.|.++.+ ...++.- .+....++++++++++.+.+.+ .++..-+..+...+..
T Consensus 220 ID~etme-----------------------V~~qV~V-dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vv 275 (635)
T PRK02888 220 VDAETME-----------------------VAWQVMV-DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVV 275 (635)
T ss_pred EECccce-----------------------EEEEEEe-CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEE
Confidence 3333222 1111111 2233556788888888776532 2333333322222222
Q ss_pred EeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCC-----c-eeeeeecCCceeEEEecCCCCEEEEeCC-CCeEEEE
Q 040361 279 LCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSING-----K-HLASSESNGRLNCLELSACGQFLVCGGD-QGQIVVR 351 (413)
Q Consensus 279 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~-----~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~v~ 351 (413)
+.... + -.+.++|++...+ ++.|.+.|... . .............+.++|||+++++++. +..|.|+
T Consensus 276 fni~~---i--ea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVI 348 (635)
T PRK02888 276 FNIAR---I--EEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVI 348 (635)
T ss_pred EchHH---H--HHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEE
Confidence 22110 0 1334577776663 56899999876 2 3334567778899999999998877654 8899999
Q ss_pred ECCCCce------------EEEecCCCCcEEEEEEccCCeEE-EEcCCCeEEEEEecC
Q 040361 352 SMNSLEV------------VRRYSGVGKIITSLAVTPEECFL-AGTKDGCLLVYSIEN 396 (413)
Q Consensus 352 d~~~~~~------------~~~~~~~~~~v~~~~~~~~~~~l-~~~~dg~i~vw~~~~ 396 (413)
|+.+.+. +.+.+. .......+|.++|... +-.-|..|..|++.+
T Consensus 349 Dv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 349 DVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 9987553 444443 2334556899997644 577889999999987
No 342
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.35 E-value=7e-05 Score=67.78 Aligned_cols=185 Identities=16% Similarity=0.115 Sum_probs=111.5
Q ss_pred ceeEEEEecCCCCEEEEeecCCC---eEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEc-cCCCcEEEE--Eecc
Q 040361 134 SQCFTTMQTPSENFLITCGNWEN---SFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATG-SYDTTVMVW--EVIR 207 (413)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~g~~d~---~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-s~dg~i~iw--~~~~ 207 (413)
..+..-.|+|++..++......+ .+.++++++++....+. ..+.-..-+|+|||++|+.+ ..||...+| |+..
T Consensus 193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~ 271 (425)
T COG0823 193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDG 271 (425)
T ss_pred cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCC
Confidence 34556778899988777644333 59999998877655554 23334467899999887654 456765555 5444
Q ss_pred ccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEe-eCCCc--EEEEEccCCeEEEEEeCCCC
Q 040361 208 ARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISG-SKDGT--CVFHTLREGRYVRSLCHPSG 284 (413)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~-~~dg~--i~vwd~~~~~~~~~~~~~~~ 284 (413)
+. ...+..-.+.-+.-.|+|||+.++-. +..|. |.++|++.+.. ..+....+
T Consensus 272 ~~------------------------~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~ 326 (425)
T COG0823 272 KN------------------------LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGG 326 (425)
T ss_pred Cc------------------------ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCC
Confidence 43 11122222333356799999987754 44554 66666655554 33332212
Q ss_pred CceeeEEEccCCcEEEEECCC-Ce--EEEEEeCCce-eeeeecCCceeEEEecCCCCEEEEeCCC
Q 040361 285 SALSKLAASRHGRIVLYGDDD-LS--LHLFSINGKH-LASSESNGRLNCLELSACGQFLVCGGDQ 345 (413)
Q Consensus 285 ~~v~~~~~~~~~~~l~~~~~d-~~--i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d 345 (413)
.-..-.++|+|++++..+.. |. |.++|+.... ............-.+.++|+.++..+..
T Consensus 327 -~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 327 -GNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred -CCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEeccC
Confidence 22267899999998877643 43 6666665222 3333444445566788888877665443
No 343
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.35 E-value=4.7e-05 Score=68.88 Aligned_cols=197 Identities=18% Similarity=0.199 Sum_probs=120.8
Q ss_pred eEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEcc---CC-CcEEEEEeccccccccccccceeecCCCceeeecC
Q 040361 157 SFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGS---YD-TTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVET 232 (413)
Q Consensus 157 ~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s---~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (413)
.+.+-|.+ |.....+..-...+..-+|+|++..++..+ .. ..+.++++.+++..
T Consensus 174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~--------------------- 231 (425)
T COG0823 174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRP--------------------- 231 (425)
T ss_pred eEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccc---------------------
Confidence 44555544 566666665666777888999988765542 22 46888999887621
Q ss_pred ceeeeecCCCCeEEEEEecCCCEEE-EeeCCCc--EEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECC-CC--
Q 040361 233 PFHILCGHDDIITCLYVSVELDIVI-SGSKDGT--CVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDD-DL-- 306 (413)
Q Consensus 233 ~~~~~~~h~~~i~~~~~~~~~~~l~-s~~~dg~--i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~-- 306 (413)
.+..+.++. ...+|+|||+.++ +...||. |.+.|+..++..+ +....+ .-..-.|+|+|+.++..+. .|
T Consensus 232 ~i~~~~g~~---~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~g-i~~~Ps~spdG~~ivf~Sdr~G~p 306 (425)
T COG0823 232 VILNFNGNN---GAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFG-INTSPSWSPDGSKIVFTSDRGGRP 306 (425)
T ss_pred eeeccCCcc---CCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-cccCCc-cccCccCCCCCCEEEEEeCCCCCc
Confidence 122233333 3467999998766 5555664 6677887766433 443322 2236689999998887654 33
Q ss_pred eEEEEEeCCceeeeee-cCCceeEEEecCCCCEEEEeCC-CCe--EEEEECCCCceEEEecCCCCcEEEEEEccCCeEE
Q 040361 307 SLHLFSINGKHLASSE-SNGRLNCLELSACGQFLVCGGD-QGQ--IVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFL 381 (413)
Q Consensus 307 ~i~i~d~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~-dg~--i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 381 (413)
.|.++|.++....... ..+.-..-.++|||++++..+. +|. |.+.|+.++..+..+. .........|.+++..+
T Consensus 307 ~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i 384 (425)
T COG0823 307 QIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMI 384 (425)
T ss_pred ceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceE
Confidence 5777777766554432 2222227789999999887664 344 7777777665444343 33333445677776544
No 344
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.35 E-value=1.9e-05 Score=75.63 Aligned_cols=136 Identities=18% Similarity=0.267 Sum_probs=100.2
Q ss_pred eeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEcc-----CCcEEEEECCCCeEEEEEeC--Cceeee-----eecCCc
Q 040361 259 GSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASR-----HGRIVLYGDDDLSLHLFSIN--GKHLAS-----SESNGR 326 (413)
Q Consensus 259 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~i~d~~--~~~~~~-----~~~~~~ 326 (413)
......|+-.|+..|+.+..+..+...+|..++-.. +..-.+.|-.+..+..||++ +..+.. ......
T Consensus 500 ~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~ 579 (794)
T PF08553_consen 500 PNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNN 579 (794)
T ss_pred CCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCC
Confidence 345678999999999999999887655555554331 13345667777899999998 333322 234456
Q ss_pred eeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEccCCeEEEEcCCCeEEEEEec
Q 040361 327 LNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFLAGTKDGCLLVYSIE 395 (413)
Q Consensus 327 i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~dg~i~vw~~~ 395 (413)
..|++-+.+| +||+|+.+|.||+||--..+.-..+++-..+|..|..+.||+++.+..+..|.+++..
T Consensus 580 Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t~ 647 (794)
T PF08553_consen 580 FSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDTL 647 (794)
T ss_pred ceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEEe
Confidence 7777776655 7899999999999995433333456677899999999999999988888889999874
No 345
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.34 E-value=1.7e-07 Score=84.18 Aligned_cols=187 Identities=12% Similarity=0.159 Sum_probs=124.2
Q ss_pred CCEEEEeecCCCeEEEEEcCCCcE--EEEeecCCCeEEEEEECC-CCCEEEEcc----CCCcEEEEEecccccccccccc
Q 040361 145 ENFLITCGNWENSFQVIALNDGRV--VQSIRQHRDVVSCVAVTT-DGSILATGS----YDTTVMVWEVIRARAPEKRVRN 217 (413)
Q Consensus 145 ~~~l~~~g~~d~~i~i~~~~~~~~--~~~~~~h~~~v~~~~~~~-~~~~l~s~s----~dg~i~iw~~~~~~~~~~~~~~ 217 (413)
++.++++|..+|.|-+-......- .....+|....++++|++ |.+.||.|- .|..+.|||+.+.-..++.
T Consensus 69 d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke--- 145 (783)
T KOG1008|consen 69 DRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKE--- 145 (783)
T ss_pred chhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCcc---
Confidence 357888899999999987754322 234566888999999988 566777763 3677999999877321110
Q ss_pred ceeecCCCceeeecCceeeee-cCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCe-EEEEEeCCCCCceeeEEEcc-
Q 040361 218 MQIEAPRKDYVIVETPFHILC-GHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGR-YVRSLCHPSGSALSKLAASR- 294 (413)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~-~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~~v~~~~~~~- 294 (413)
-..+. +......+++|..+.+++++|.....+.++|++... ....+.. ..+..+.++|
T Consensus 146 ----------------~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnT---k~vqG~tVdp~ 206 (783)
T KOG1008|consen 146 ----------------SPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNT---KYVQGITVDPF 206 (783)
T ss_pred ----------------ccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhh---hhcccceecCC
Confidence 00111 133345588888888899999999999999997332 2222221 2466788888
Q ss_pred CCcEEEEECCCCeEEEEEeC---Cceeeee-----ecCCceeEEEecCCC--CEEEEeCCCCeEEEEECC
Q 040361 295 HGRIVLYGDDDLSLHLFSIN---GKHLASS-----ESNGRLNCLELSACG--QFLVCGGDQGQIVVRSMN 354 (413)
Q Consensus 295 ~~~~l~~~~~d~~i~i~d~~---~~~~~~~-----~~~~~i~~~~~s~~~--~~l~~~~~dg~i~v~d~~ 354 (413)
.++++++.. |+.|.+||.. ...+... .....+..++|+|.. ...+..-..++|++||+.
T Consensus 207 ~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 207 SPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred CCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 677776655 8999999942 2222221 122358999999964 333444456789999985
No 346
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=0.0021 Score=58.09 Aligned_cols=236 Identities=14% Similarity=0.100 Sum_probs=152.4
Q ss_pred EEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCE-EEEccCCCcEEEEEecccccccccc
Q 040361 137 FTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSI-LATGSYDTTVMVWEVIRARAPEKRV 215 (413)
Q Consensus 137 ~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~s~s~dg~i~iw~~~~~~~~~~~~ 215 (413)
..+...+++..+.++......+...+............-...-..++.++++.. .++...++.|.+.|..+..
T Consensus 34 ~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~------ 107 (381)
T COG3391 34 GGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNT------ 107 (381)
T ss_pred ceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccc------
Confidence 445556777655554443445555555422222222211133456778888774 4455556899999965554
Q ss_pred ccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeC---CCcEEEEEccCCeEEEEEeCCCCCceeeEEE
Q 040361 216 RNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSK---DGTCVFHTLREGRYVRSLCHPSGSALSKLAA 292 (413)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~ 292 (413)
...... -......++++++++.+..+.. ++++.+.|-.+++......... .+ ..+++
T Consensus 108 -----------------~~~~~~-vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~-~P-~~~a~ 167 (381)
T COG3391 108 -----------------VLGSIP-VGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGN-TP-TGVAV 167 (381)
T ss_pred -----------------eeeEee-eccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCC-Cc-ceEEE
Confidence 111111 1114567899999977666555 6889999998888888854432 23 88999
Q ss_pred ccCCcEEEEEC-CCCeEEEEEeCCceeee------eecCCceeEEEecCCCCEEEEeCCC---CeEEEEECCCCceEEE-
Q 040361 293 SRHGRIVLYGD-DDLSLHLFSINGKHLAS------SESNGRLNCLELSACGQFLVCGGDQ---GQIVVRSMNSLEVVRR- 361 (413)
Q Consensus 293 ~~~~~~l~~~~-~d~~i~i~d~~~~~~~~------~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~v~d~~~~~~~~~- 361 (413)
+|+|+.+++.. .++.|.++|.++..+.. .........+.++|+|.++.+.... +.+...|..++.....
T Consensus 168 ~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~ 247 (381)
T COG3391 168 DPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATD 247 (381)
T ss_pred CCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEec
Confidence 99999666554 78899999988766653 3334456788999999976665443 5899999998877665
Q ss_pred ecCCCCcEEEEEEccCCeEE-E-EcCCCeEEEEEecCCc
Q 040361 362 YSGVGKIITSLAVTPEECFL-A-GTKDGCLLVYSIENRR 398 (413)
Q Consensus 362 ~~~~~~~v~~~~~~~~~~~l-~-~~~dg~i~vw~~~~~~ 398 (413)
..........+..+|+|.++ + -+..+.+.+-|..+.+
T Consensus 248 ~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 248 LPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred cccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCc
Confidence 22111146678899998655 3 3455778888777644
No 347
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.30 E-value=0.0011 Score=59.76 Aligned_cols=216 Identities=17% Similarity=0.128 Sum_probs=146.2
Q ss_pred EEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccC---CCcEEEEEecccccccc
Q 040361 137 FTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSY---DTTVMVWEVIRARAPEK 213 (413)
Q Consensus 137 ~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~---dg~i~iw~~~~~~~~~~ 213 (413)
..+..++.+..+.+....++.|.+.|..+.+......--. ....++++++++.++.+.. ++++.+.|..+..
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~---- 151 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK---- 151 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCe----
Confidence 3456678888777766668999999988777776664322 5678999999988877665 5777777776665
Q ss_pred ccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEee-CCCcEEEEEccCCeEEE-EE--eCCCCCceee
Q 040361 214 RVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGS-KDGTCVFHTLREGRYVR-SL--CHPSGSALSK 289 (413)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~-~~--~~~~~~~v~~ 289 (413)
.......-..+ ..+++.|+++.+.... .++.|.+.|.......+ .- ..........
T Consensus 152 -------------------~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~ 211 (381)
T COG3391 152 -------------------VTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAG 211 (381)
T ss_pred -------------------EEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCce
Confidence 23333222234 7899999999665554 78899999976655543 10 0111234577
Q ss_pred EEEccCCcEEEEECCC---CeEEEEEeCCceeeee--ecCC-ceeEEEecCCCCEEEEeC-CCCeEEEEECCCCceEEEe
Q 040361 290 LAASRHGRIVLYGDDD---LSLHLFSINGKHLASS--ESNG-RLNCLELSACGQFLVCGG-DQGQIVVRSMNSLEVVRRY 362 (413)
Q Consensus 290 ~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~--~~~~-~i~~~~~s~~~~~l~~~~-~dg~i~v~d~~~~~~~~~~ 362 (413)
+.+++++..+.+.... +.+...|.....+... .... ....+.++|+|+++.+.. ..+.+.+.|..+......+
T Consensus 212 i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~ 291 (381)
T COG3391 212 IAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTG 291 (381)
T ss_pred EEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeee
Confidence 8999999977665544 4888888885554432 2222 567789999999988874 4589999999887777665
Q ss_pred cCCC---CcEEEEEEccC
Q 040361 363 SGVG---KIITSLAVTPE 377 (413)
Q Consensus 363 ~~~~---~~v~~~~~~~~ 377 (413)
.... ..+..+++.+.
T Consensus 292 ~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 292 PTGNEALGEPVSIAISPL 309 (381)
T ss_pred cccccccccceeccceee
Confidence 5332 23555555554
No 348
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.29 E-value=0.0014 Score=57.44 Aligned_cols=297 Identities=13% Similarity=0.138 Sum_probs=126.2
Q ss_pred eeccCCCCCC-ceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCc
Q 040361 89 WLTTQLQSGG-NFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGR 167 (413)
Q Consensus 89 ~~~~~~s~~~-~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~ 167 (413)
+-...|.++| ++|+.+..|+.-.++........+...-... +...+....+++++.++..-. +..|+-.|+.+.+
T Consensus 38 F~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~---g~~~~g~~~s~~~~~~~Yv~~-~~~l~~vdL~T~e 113 (386)
T PF14583_consen 38 FYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGP---GDNTFGGFLSPDDRALYYVKN-GRSLRRVDLDTLE 113 (386)
T ss_dssp TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS----B-TTT-EE-TTSSEEEEEET-TTEEEEEETTT--
T ss_pred ecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCC---CCCccceEEecCCCeEEEEEC-CCeEEEEECCcCc
Confidence 3445688999 5567777788766654444433322111100 111223445688888776554 5688999999988
Q ss_pred EEEEeecCCCeEEEEEEC--CCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeee---cCceeeeecCCC
Q 040361 168 VVQSIRQHRDVVSCVAVT--TDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIV---ETPFHILCGHDD 242 (413)
Q Consensus 168 ~~~~~~~h~~~v~~~~~~--~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~h~~ 242 (413)
....+......+-...|. .|+..++-.-.... -|...+ ........-...+...+..+ ......+..-..
T Consensus 114 ~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~--d~~~l~---~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~ 188 (386)
T PF14583_consen 114 ERVVYEVPDDWKGYGTWVANSDCTKLVGIEISRE--DWKPLT---KWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTD 188 (386)
T ss_dssp EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGG--G--------SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS
T ss_pred EEEEEECCcccccccceeeCCCccEEEEEEEeeh--hccCcc---ccHHHHHHHhhCCCceEEEEECCCCceeEEEecCc
Confidence 766666666666545553 34544432211000 000000 00000000000111100000 012333444455
Q ss_pred CeEEEEEecCCCEEEEeeCCC-----cEEEEEccC-CeEEEEEeC-CCCCceeeEEEccCCcEEEEE-----CCCCeEEE
Q 040361 243 IITCLYVSVELDIVISGSKDG-----TCVFHTLRE-GRYVRSLCH-PSGSALSKLAASRHGRIVLYG-----DDDLSLHL 310 (413)
Q Consensus 243 ~i~~~~~~~~~~~l~s~~~dg-----~i~vwd~~~-~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~-----~~d~~i~i 310 (413)
.+..+.|+|....+++-+..| .-++|-+++ +...+.+.. ..+..+..=-|.++|..|..- +.+..|.-
T Consensus 189 wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~ 268 (386)
T PF14583_consen 189 WLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAG 268 (386)
T ss_dssp -EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEE
T ss_pred cccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEe
Confidence 667788888655455443333 135665543 333333322 223345555788998876552 22445666
Q ss_pred EEeCCceeeeeecCCceeEEEecCCCCEEEEeCCCC----------------eEEEEECCCCceEEEecCCC--------
Q 040361 311 FSINGKHLASSESNGRLNCLELSACGQFLVCGGDQG----------------QIVVRSMNSLEVVRRYSGVG-------- 366 (413)
Q Consensus 311 ~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg----------------~i~v~d~~~~~~~~~~~~~~-------- 366 (413)
+|+................+..++||++++--+.|. .|+++++..++... +..|.
T Consensus 269 ~d~~t~~~~~~~~~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~-l~~h~~sw~v~~~ 347 (386)
T PF14583_consen 269 YDPDTGERRRLMEMPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRK-LARHDTSWKVLDG 347 (386)
T ss_dssp E-TTT--EEEEEEE-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEE-EEE-------BTT
T ss_pred eCCCCCCceEEEeCCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceee-eeeccCcceeecC
Confidence 677633222222222344566678888876533331 56778887665431 11121
Q ss_pred --C-cEEEEEEccCCeEE--EEcCCCeEEEEEec
Q 040361 367 --K-IITSLAVTPEECFL--AGTKDGCLLVYSIE 395 (413)
Q Consensus 367 --~-~v~~~~~~~~~~~l--~~~~dg~i~vw~~~ 395 (413)
. .=....|+|||+.+ .+...|...||=++
T Consensus 348 ~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 348 DRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp BSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred CCccCCCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence 1 12457899998755 47778877777554
No 349
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.26 E-value=0.0001 Score=69.19 Aligned_cols=260 Identities=14% Similarity=0.078 Sum_probs=141.6
Q ss_pred CCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEEC
Q 040361 106 QDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVT 185 (413)
Q Consensus 106 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~ 185 (413)
..|.+.++.+...|. .+...+-.+.+++|.|. +.+++.|-.-|.+.+|..++.+.......|..+|..+.|+
T Consensus 39 r~GSVtIfadtGEPq-------r~Vt~P~hatSLCWHpe-~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS 110 (1416)
T KOG3617|consen 39 RGGSVTIFADTGEPQ-------RDVTYPVHATSLCWHPE-EFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWS 110 (1416)
T ss_pred CCceEEEEecCCCCC-------cccccceehhhhccChH-HHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEec
Confidence 455666664443332 12222334455777765 4555567778999999988877766667799999999999
Q ss_pred CCCCEEEEccCCCcEEEEEecccccccc----------ccccceeec--CCCcee------ee--cCceeeeecCCCC--
Q 040361 186 TDGSILATGSYDTTVMVWEVIRARAPEK----------RVRNMQIEA--PRKDYV------IV--ETPFHILCGHDDI-- 243 (413)
Q Consensus 186 ~~~~~l~s~s~dg~i~iw~~~~~~~~~~----------~~~~~~~~~--~~~~~~------~~--~~~~~~~~~h~~~-- 243 (413)
++|..|+|+..-|.+.+|..+.....+. .+..+-+.. +..+.. +. +..+....+-...
T Consensus 111 ~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a 190 (1416)
T KOG3617|consen 111 HDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLA 190 (1416)
T ss_pred CCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchh
Confidence 9999999999999999999863321110 000000000 000000 00 0000000000000
Q ss_pred eEEE--EEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeC--C----
Q 040361 244 ITCL--YVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSIN--G---- 315 (413)
Q Consensus 244 i~~~--~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~--~---- 315 (413)
-.++ .-.|+|..+..++.+|+|+..|- .|+.....+..+ .| .+.|.+...-+++...+-++.++-.. |
T Consensus 191 ~rs~~ksgv~~g~~F~~~~~~GtVyyvdq-~g~~~~V~k~dS--~v-QmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee 266 (1416)
T KOG3617|consen 191 ERSDEKSGVPKGTEFLFAGKSGTVYYVDQ-NGRQRTVHKLDS--EV-QMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEE 266 (1416)
T ss_pred hccccccCCCCCcEEEEEcCCceEEEEcC-CCcEEEEEEccc--hH-HHHHhcccceEEEEeeeceeeEEEecCCCchHH
Confidence 0000 01367778888899999888774 444444433321 11 12223222222222222222222110 0
Q ss_pred -----------ce------------ee-----eeecCCceeEEEecCCCCEEEEeCCCCeEEEEECC-C---C---ceEE
Q 040361 316 -----------KH------------LA-----SSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMN-S---L---EVVR 360 (413)
Q Consensus 316 -----------~~------------~~-----~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~-~---~---~~~~ 360 (413)
.+ +. .......++|++++..+..|..|...|.+.+|--. + | .-..
T Consensus 267 ~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w 346 (1416)
T KOG3617|consen 267 RCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVW 346 (1416)
T ss_pred hhhhhhccccCCccCccccccccccccCCcchhhhcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceE
Confidence 00 00 01234578999999999999999999999999532 2 1 2233
Q ss_pred EecC---CCCcEEEEEEccC
Q 040361 361 RYSG---VGKIITSLAVTPE 377 (413)
Q Consensus 361 ~~~~---~~~~v~~~~~~~~ 377 (413)
.+.+ ..+.|+.+.|.|-
T Consensus 347 ~l~~~~e~~g~I~~i~Wg~~ 366 (1416)
T KOG3617|consen 347 TLNGKRESLGKISLIRWGPI 366 (1416)
T ss_pred EecCchhhccceEEEEeccc
Confidence 3333 3467889999884
No 350
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.19 E-value=0.0017 Score=56.80 Aligned_cols=215 Identities=11% Similarity=0.025 Sum_probs=106.2
Q ss_pred ecCCCCEEEEeecCCC--eEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccc
Q 040361 141 QTPSENFLITCGNWEN--SFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNM 218 (413)
Q Consensus 141 ~~~~~~~l~~~g~~d~--~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~ 218 (413)
|.++|+.|+.++..|| .+++.|+.+++..+.-.+-........++++++.++-......|.-.|+++.+
T Consensus 43 ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e--------- 113 (386)
T PF14583_consen 43 FTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLE--------- 113 (386)
T ss_dssp B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT-----------
T ss_pred cCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCc---------
Confidence 4788999999887777 67777888888776655432323345667888887655555678888887765
Q ss_pred eeecCCCceeeecCceeeeecCCCCeEEEEEe--cCCCEEEEee----------------------CCCcEEEEEccCCe
Q 040361 219 QIEAPRKDYVIVETPFHILCGHDDIITCLYVS--VELDIVISGS----------------------KDGTCVFHTLREGR 274 (413)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~--~~~~~l~s~~----------------------~dg~i~vwd~~~~~ 274 (413)
....+......+-...|. .++..++-.- ....|.--|+.+|+
T Consensus 114 --------------~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~ 179 (386)
T PF14583_consen 114 --------------ERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE 179 (386)
T ss_dssp --------------EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--
T ss_pred --------------EEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc
Confidence 112222223333223332 3344332211 12356666888887
Q ss_pred EEEEEeCCCCCceeeEEEccCCcEEEEECCCC-----eEEEEEeC--Cceeeee---ecCCceeEEEecCCCCEEEEe--
Q 040361 275 YVRSLCHPSGSALSKLAASRHGRIVLYGDDDL-----SLHLFSIN--GKHLASS---ESNGRLNCLELSACGQFLVCG-- 342 (413)
Q Consensus 275 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~i~d~~--~~~~~~~---~~~~~i~~~~~s~~~~~l~~~-- 342 (413)
....+.. ...+..+.++|....++.-+..| .-++|-++ +...... .....+..=-|.|||..|..-
T Consensus 180 ~~~v~~~--~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~ 257 (386)
T PF14583_consen 180 RKVVFED--TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSY 257 (386)
T ss_dssp EEEEEEE--SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEE
T ss_pred eeEEEec--CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEee
Confidence 6655554 34778899999654444433322 12556554 4433332 222334444689999866542
Q ss_pred ---CCCCeEEEEECCCCceEEEecCCCCcEEEEEEccCCeEEE
Q 040361 343 ---GDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFLA 382 (413)
Q Consensus 343 ---~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 382 (413)
+.+..|.-+|..+++....... .....+..++||.+++
T Consensus 258 ~~~~~~~~i~~~d~~t~~~~~~~~~--p~~~H~~ss~Dg~L~v 298 (386)
T PF14583_consen 258 TPGGQDFWIAGYDPDTGERRRLMEM--PWCSHFMSSPDGKLFV 298 (386)
T ss_dssp ETTT--EEEEEE-TTT--EEEEEEE---SEEEEEE-TTSSEEE
T ss_pred cCCCCceEEEeeCCCCCCceEEEeC--CceeeeEEcCCCCEEE
Confidence 2344677788888765432222 2345666788898887
No 351
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.17 E-value=0.0034 Score=53.96 Aligned_cols=206 Identities=12% Similarity=0.070 Sum_probs=117.6
Q ss_pred EEecCCCCEEEEeecC-CCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEecccccccccccc
Q 040361 139 TMQTPSENFLITCGNW-ENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRN 217 (413)
Q Consensus 139 ~~~~~~~~~l~~~g~~-d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~ 217 (413)
...+.+|+++++.-.. ..+|.|.|+..++.+.++.- .+.....-+. .+.+.+-+.||++.-..+..........
T Consensus 100 ~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~-PGC~~iyP~~--~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~-- 174 (342)
T PF06433_consen 100 FALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT-PGCWLIYPSG--NRGFSMLCGDGSLLTVTLDADGKEAQKS-- 174 (342)
T ss_dssp EEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG-TSEEEEEEEE--TTEEEEEETTSCEEEEEETSTSSEEEEE--
T ss_pred eEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC-CCEEEEEecC--CCceEEEecCCceEEEEECCCCCEeEee--
Confidence 3457788887775432 44799999999998888763 2222222222 2457788889999999998443221110
Q ss_pred ceeecCCCceeeecCceeeeecCCCCe-EEEEEecCCCEEEEeeCCCcEEEEEccCCeE--EEEEeCCC---------CC
Q 040361 218 MQIEAPRKDYVIVETPFHILCGHDDII-TCLYVSVELDIVISGSKDGTCVFHTLREGRY--VRSLCHPS---------GS 285 (413)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~h~~~i-~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~---------~~ 285 (413)
...+..-..++ ..-++...+..++--+.+|.|+--|+..... ...+.... ..
T Consensus 175 ----------------t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPG 238 (342)
T PF06433_consen 175 ----------------TKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPG 238 (342)
T ss_dssp ----------------EEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-
T ss_pred ----------------ccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCc
Confidence 11111122222 2333444455555567788887777754432 12221110 02
Q ss_pred ceeeEEEccCCcEEEEECC--------CC--eEEEEEeC-CceeeeeecCCceeEEEecCCCC-EEEE-eCCCCeEEEEE
Q 040361 286 ALSKLAASRHGRIVLYGDD--------DL--SLHLFSIN-GKHLASSESNGRLNCLELSACGQ-FLVC-GGDQGQIVVRS 352 (413)
Q Consensus 286 ~v~~~~~~~~~~~l~~~~~--------d~--~i~i~d~~-~~~~~~~~~~~~i~~~~~s~~~~-~l~~-~~~dg~i~v~d 352 (413)
...-+++++..+.|++--. |+ .|.+||+. ++++.......++.+++++.+.+ +|++ ...++.+.+||
T Consensus 239 G~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D 318 (342)
T PF06433_consen 239 GWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYD 318 (342)
T ss_dssp SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred ceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEe
Confidence 3445777776555555321 22 47777877 45555666667888999998876 4443 45689999999
Q ss_pred CCCCceEEEecCC
Q 040361 353 MNSLEVVRRYSGV 365 (413)
Q Consensus 353 ~~~~~~~~~~~~~ 365 (413)
..+++.++++..-
T Consensus 319 ~~tGk~~~~~~~l 331 (342)
T PF06433_consen 319 AATGKLVRSIEQL 331 (342)
T ss_dssp TTT--EEEEE---
T ss_pred CcCCcEEeehhcc
Confidence 9999999988743
No 352
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.17 E-value=3.1e-05 Score=70.94 Aligned_cols=137 Identities=16% Similarity=0.130 Sum_probs=99.0
Q ss_pred CCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCC
Q 040361 175 HRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELD 254 (413)
Q Consensus 175 h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~ 254 (413)
|...|.--+++..+++++.|+.-|.+.+|+-..+.. ......+-.+.+..+..+++..
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~----------------------~~~~~~~~~~~~~~~~vs~~e~ 89 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEM----------------------RKLKNEGATGITCVRSVSSVEY 89 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhh----------------------hcccccCccceEEEEEecchhH
Confidence 445555556667789999999999999999877762 1222233455667777888888
Q ss_pred EEEEeeCCCcEEEEEccCCeEE-----EEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCce------eeeeec
Q 040361 255 IVISGSKDGTCVFHTLREGRYV-----RSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKH------LASSES 323 (413)
Q Consensus 255 ~l~s~~~dg~i~vwd~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~------~~~~~~ 323 (413)
++|.|+..|.|.++-+..+.+- ......++..|++++|++++..+++|...|+|..-.++... ......
T Consensus 90 lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ 169 (726)
T KOG3621|consen 90 LVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSE 169 (726)
T ss_pred hhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeecc
Confidence 9999999999999988764332 22222236789999999999999999999999988887521 112345
Q ss_pred CCceeEEEec
Q 040361 324 NGRLNCLELS 333 (413)
Q Consensus 324 ~~~i~~~~~s 333 (413)
++.|..+.+.
T Consensus 170 ds~IVQlD~~ 179 (726)
T KOG3621|consen 170 DSEIVQLDYL 179 (726)
T ss_pred CcceEEeecc
Confidence 6677777664
No 353
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.16 E-value=0.0021 Score=57.80 Aligned_cols=223 Identities=17% Similarity=0.214 Sum_probs=122.0
Q ss_pred eEEEEEECCCCCEEEEccCCCcEEEEEeccccccc-ccc-cc-------ceeecCCCceeee-----------cCceeee
Q 040361 178 VVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPE-KRV-RN-------MQIEAPRKDYVIV-----------ETPFHIL 237 (413)
Q Consensus 178 ~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~-~~~-~~-------~~~~~~~~~~~~~-----------~~~~~~~ 237 (413)
.|+.+.|.++..-|+.|...|.|.+|.....+... +.. .. +........+... -.+...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 58899999998899999999999999987765332 000 00 0000001111111 1234555
Q ss_pred ecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeC-------CCCCceeeEEEcc-----CC---cEEEEE
Q 040361 238 CGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCH-------PSGSALSKLAASR-----HG---RIVLYG 302 (413)
Q Consensus 238 ~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-------~~~~~v~~~~~~~-----~~---~~l~~~ 302 (413)
....++|++++.+ |-.+++.|.++|.+.|.|+|....+..-.. .....++++.|.. |+ -.+++|
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 6668999999996 556999999999999999988877766321 1234577777763 33 468889
Q ss_pred CCCCeEEEEEeC----Cceeee----e-ecCCceeEEE-ecCC-----------------C----CEEEEeCCCCeEEEE
Q 040361 303 DDDLSLHLFSIN----GKHLAS----S-ESNGRLNCLE-LSAC-----------------G----QFLVCGGDQGQIVVR 351 (413)
Q Consensus 303 ~~d~~i~i~d~~----~~~~~~----~-~~~~~i~~~~-~s~~-----------------~----~~l~~~~~dg~i~v~ 351 (413)
...|.+.+|.+- +..... . .+.+++..+. ++.+ | .+++++ .+..++++
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv-Se~~irv~ 240 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV-SESDIRVF 240 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--SSEEEEE
T ss_pred eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE-cccceEEE
Confidence 999999999774 211111 1 3445555443 3211 1 134443 45689999
Q ss_pred ECCCCceEEEecCCCCcEEEEEEcc-----CCe-EEEEcCCCeEEEEEecCCccccc
Q 040361 352 SMNSLEVVRRYSGVGKIITSLAVTP-----EEC-FLAGTKDGCLLVYSIENRRTSLP 402 (413)
Q Consensus 352 d~~~~~~~~~~~~~~~~v~~~~~~~-----~~~-~l~~~~dg~i~vw~~~~~~~~~~ 402 (413)
...+.+..+......-....+.+.+ .+. +++-..+|.|+++.+-.-+....
T Consensus 241 ~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~ 297 (395)
T PF08596_consen 241 KPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKS 297 (395)
T ss_dssp -TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEE
T ss_pred eCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhc
Confidence 9988877655542222334445532 344 44577999999999988766543
No 354
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.15 E-value=0.00049 Score=66.23 Aligned_cols=147 Identities=17% Similarity=0.227 Sum_probs=100.2
Q ss_pred CEEEEeecCCCeEEEEEcCCCcEEEEeecCCCe-EEEEEECC-----CCCEEEEccCCCcEEEEEeccccccccccccce
Q 040361 146 NFLITCGNWENSFQVIALNDGRVVQSIRQHRDV-VSCVAVTT-----DGSILATGSYDTTVMVWEVIRARAPEKRVRNMQ 219 (413)
Q Consensus 146 ~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~-v~~~~~~~-----~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~ 219 (413)
+.++........|+-.|++.|+++..+..|... |..++-.. +....+.|-.+..+..||.+-... +.+.
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~--k~v~--- 568 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN--KLVD--- 568 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCC--ceee---
Confidence 344444444678999999999999999987754 55544321 134466777888999999875431 0000
Q ss_pred eecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEE
Q 040361 220 IEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIV 299 (413)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 299 (413)
.... ........+|++-+.+| +||.|+.+|.|++||- .|..-.+.-..-+.+|..+.++.||+++
T Consensus 569 ------------~~~k-~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwi 633 (794)
T PF08553_consen 569 ------------SQSK-QYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWI 633 (794)
T ss_pred ------------cccc-ccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEE
Confidence 0011 12345567888877665 7899999999999994 4544444444447899999999999999
Q ss_pred EEECCCCeEEEEEe
Q 040361 300 LYGDDDLSLHLFSI 313 (413)
Q Consensus 300 ~~~~~d~~i~i~d~ 313 (413)
++.+.. .|.+++.
T Consensus 634 laTc~t-yLlLi~t 646 (794)
T PF08553_consen 634 LATCKT-YLLLIDT 646 (794)
T ss_pred EEeecc-eEEEEEE
Confidence 888764 6777775
No 355
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.15 E-value=0.00049 Score=62.62 Aligned_cols=211 Identities=12% Similarity=0.118 Sum_probs=111.8
Q ss_pred CCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEe
Q 040361 93 QLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSI 172 (413)
Q Consensus 93 ~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~ 172 (413)
.++|+|++++. +.||.+.++. .....-...+.+...+|.+.++ +++.-. ++.|.|+.--+.+....+
T Consensus 39 s~npngr~v~V-~g~geY~iyt----------~~~~r~k~~G~g~~~vw~~~n~-yAv~~~-~~~I~I~kn~~~~~~k~i 105 (443)
T PF04053_consen 39 SHNPNGRFVLV-CGDGEYEIYT----------ALAWRNKAFGSGLSFVWSSRNR-YAVLES-SSTIKIYKNFKNEVVKSI 105 (443)
T ss_dssp EE-TTSSEEEE-EETTEEEEEE----------TTTTEEEEEEE-SEEEE-TSSE-EEEE-T-TS-EEEEETTEE-TT---
T ss_pred EECCCCCEEEE-EcCCEEEEEE----------ccCCcccccCceeEEEEecCcc-EEEEEC-CCeEEEEEcCccccceEE
Confidence 46899998888 5566666642 1111112246677888998555 444333 778999643222222233
Q ss_pred ecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecC
Q 040361 173 RQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVE 252 (413)
Q Consensus 173 ~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~ 252 (413)
+. ...+..+-. |..|...+.+ .|.+||+++++ .+..+.. .+|..+.|+++
T Consensus 106 ~~-~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~-----------------------~i~~i~v--~~vk~V~Ws~~ 155 (443)
T PF04053_consen 106 KL-PFSVEKIFG---GNLLGVKSSD-FICFYDWETGK-----------------------LIRRIDV--SAVKYVIWSDD 155 (443)
T ss_dssp ---SS-EEEEE----SSSEEEEETT-EEEEE-TTT-------------------------EEEEESS---E-EEEEE-TT
T ss_pred cC-CcccceEEc---CcEEEEECCC-CEEEEEhhHcc-----------------------eeeEEec--CCCcEEEEECC
Confidence 22 112333432 7777776654 89999999887 4555542 23889999999
Q ss_pred CCEEEEeeCCCcEEEEEccCC--------------eEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCcee
Q 040361 253 LDIVISGSKDGTCVFHTLREG--------------RYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKHL 318 (413)
Q Consensus 253 ~~~l~s~~~dg~i~vwd~~~~--------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 318 (413)
+++++..+.+ .+.+++.... ..+..+ ...|.+.+|..+ .++..+.. .++. =+.|..-
T Consensus 156 g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~----~~~IkSg~W~~d--~fiYtT~~-~lkY-l~~Ge~~ 226 (443)
T PF04053_consen 156 GELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEI----SERIKSGCWVED--CFIYTTSN-HLKY-LVNGETG 226 (443)
T ss_dssp SSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-----S--SEEEEETT--EEEEE-TT-EEEE-EETTEEE
T ss_pred CCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEe----cceeEEEEEEcC--EEEEEcCC-eEEE-EEcCCcc
Confidence 9999988755 5666654322 222222 236888888876 44444444 6766 4445544
Q ss_pred eeeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCC
Q 040361 319 ASSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNS 355 (413)
Q Consensus 319 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~ 355 (413)
.....+.++.-+.+.+..+.+.....++.|..+.+..
T Consensus 227 ~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 227 IIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp EEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred eEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 4445567777788888778888888998888887653
No 356
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.13 E-value=0.0044 Score=53.46 Aligned_cols=198 Identities=16% Similarity=0.140 Sum_probs=116.8
Q ss_pred eEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEE--------------eecCCCeEEEEE---ECCCCCEEEEccCCC
Q 040361 136 CFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQS--------------IRQHRDVVSCVA---VTTDGSILATGSYDT 198 (413)
Q Consensus 136 ~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~--------------~~~h~~~v~~~~---~~~~~~~l~s~s~dg 198 (413)
+..+...++-+.+++-. |+.++++++..-..... .......+...+ -.....+|+.+ ...
T Consensus 38 I~ql~vl~~~~~llvLs--d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk 114 (275)
T PF00780_consen 38 ITQLSVLPELNLLLVLS--DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKK 114 (275)
T ss_pred EEEEEEecccCEEEEEc--CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEE-ECC
Confidence 77777888888777765 79999999865433321 011223444444 11233444444 446
Q ss_pred cEEEEEeccccccc-cccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEE
Q 040361 199 TVMVWEVIRARAPE-KRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVR 277 (413)
Q Consensus 199 ~i~iw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 277 (413)
+|.+|......... . ....+. -...+.+++|. ++.++.|..++ ..+.|+.++....
T Consensus 115 ~i~i~~~~~~~~~f~~-------------------~~ke~~-lp~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~ 171 (275)
T PF00780_consen 115 KILIYEWNDPRNSFSK-------------------LLKEIS-LPDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPSE 171 (275)
T ss_pred EEEEEEEECCcccccc-------------------eeEEEE-cCCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCceE
Confidence 89999987643111 1 122222 34678888888 45677776554 6778998776544
Q ss_pred EEeCCCC-----------CceeeEEEccCCcEEEEECCCCeEEEEEeCCceee--eeecCCceeEEEecCCCCEEEEeCC
Q 040361 278 SLCHPSG-----------SALSKLAASRHGRIVLYGDDDLSLHLFSINGKHLA--SSESNGRLNCLELSACGQFLVCGGD 344 (413)
Q Consensus 278 ~~~~~~~-----------~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~i~~~~~s~~~~~l~~~~~ 344 (413)
.+..... .++..+.. +++.+|++- +..-.+.|..|.... .......+..+++ ...||++-..
T Consensus 172 l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~~G~~~r~~~i~W~~~p~~~~~--~~pyli~~~~ 246 (275)
T PF00780_consen 172 LLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNKNGEPSRKSTIQWSSAPQSVAY--SSPYLIAFSS 246 (275)
T ss_pred EeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcCCCCcCcccEEEcCCchhEEEE--ECCEEEEECC
Confidence 3322111 12222233 345555543 345556677765443 2344556677777 3457777666
Q ss_pred CCeEEEEECCCCceEEEecCC
Q 040361 345 QGQIVVRSMNSLEVVRRYSGV 365 (413)
Q Consensus 345 dg~i~v~d~~~~~~~~~~~~~ 365 (413)
+ .|.||++.++++++.+...
T Consensus 247 ~-~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 247 N-SIEVRSLETGELVQTIPLP 266 (275)
T ss_pred C-EEEEEECcCCcEEEEEECC
Confidence 4 5999999999999888743
No 357
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.12 E-value=0.0047 Score=53.43 Aligned_cols=211 Identities=15% Similarity=0.067 Sum_probs=127.9
Q ss_pred EecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccce
Q 040361 140 MQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQ 219 (413)
Q Consensus 140 ~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~ 219 (413)
.|.++...|+.+.-..+.|.-|+..+++.. .+. +.+.+.++..-.++..|+++.. -+.+++.+++... .
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~-t------ 99 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKR-VFP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKI-T------ 99 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCcee-E------
Confidence 456777877777777889999998766543 222 3333445544444555655532 3566776444310 0
Q ss_pred eecCCCceeeecCceee-eecC-CCCeEEEEEecCCCEEEEeeC-----------CCcEEEEEccCCeEEEEEeCCCCCc
Q 040361 220 IEAPRKDYVIVETPFHI-LCGH-DDIITCLYVSVELDIVISGSK-----------DGTCVFHTLREGRYVRSLCHPSGSA 286 (413)
Q Consensus 220 ~~~~~~~~~~~~~~~~~-~~~h-~~~i~~~~~~~~~~~l~s~~~-----------dg~i~vwd~~~~~~~~~~~~~~~~~ 286 (413)
.+.. ..+. ....+.+...|+|.+.++-.. -|.++.+|. .+..++.+..+ -..
T Consensus 100 -------------~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~-~~~ 164 (307)
T COG3386 100 -------------LLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDD-LTI 164 (307)
T ss_pred -------------EeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCc-EEe
Confidence 0000 0111 134456777788876654333 133444443 45555444432 234
Q ss_pred eeeEEEccCCcEEEEECC-CCeEEEEEeCC-------ce--eeeeecCCceeEEEecCCCCEEEEeCCCC-eEEEEECCC
Q 040361 287 LSKLAASRHGRIVLYGDD-DLSLHLFSING-------KH--LASSESNGRLNCLELSACGQFLVCGGDQG-QIVVRSMNS 355 (413)
Q Consensus 287 v~~~~~~~~~~~l~~~~~-d~~i~i~d~~~-------~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-~i~v~d~~~ 355 (413)
.+.++||||++.++.+.. .+.|+.|++.. .. +......+..-.++...+|.+.+++..+| .|.+|+..
T Consensus 165 ~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd- 243 (307)
T COG3386 165 PNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD- 243 (307)
T ss_pred cCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-
Confidence 678999999987776654 47888887751 11 11112346667788888898886665554 89999988
Q ss_pred CceEEEecCCCCcEEEEEEccC
Q 040361 356 LEVVRRYSGVGKIITSLAVTPE 377 (413)
Q Consensus 356 ~~~~~~~~~~~~~v~~~~~~~~ 377 (413)
++++..+..+...+++++|--.
T Consensus 244 G~l~~~i~lP~~~~t~~~FgG~ 265 (307)
T COG3386 244 GKLLGEIKLPVKRPTNPAFGGP 265 (307)
T ss_pred CcEEEEEECCCCCCccceEeCC
Confidence 9999988877678888888753
No 358
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.12 E-value=0.0061 Score=57.46 Aligned_cols=258 Identities=11% Similarity=0.094 Sum_probs=139.7
Q ss_pred CEEEEeecCCCeEEEEEcCCCcEEEEeec--CCCeEEEEEECC---CCCEEEEcc------CCCcEEEEEeccccccccc
Q 040361 146 NFLITCGNWENSFQVIALNDGRVVQSIRQ--HRDVVSCVAVTT---DGSILATGS------YDTTVMVWEVIRARAPEKR 214 (413)
Q Consensus 146 ~~l~~~g~~d~~i~i~~~~~~~~~~~~~~--h~~~v~~~~~~~---~~~~l~s~s------~dg~i~iw~~~~~~~~~~~ 214 (413)
..+++ ++.|+.+..+|..+|+.+..... +... ..+.-+| ++ .++.+. .+|.|..+|.++++..++.
T Consensus 121 ~~v~v-~t~dg~l~ALDa~TGk~~W~~~~~~~~~~-~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 121 GKVFF-GTLDARLVALDAKTGKVVWSKKNGDYKAG-YTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred CEEEE-EcCCCEEEEEECCCCCEEeeccccccccc-ccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEec
Confidence 34444 45599999999999999876643 1110 0111122 34 455543 2688999999998855432
Q ss_pred cccceeecCC-C------ceeeecC-ceeeeecCCCCeE-EEEEecCCCEEEEeeCC-----C-----------cEEEEE
Q 040361 215 VRNMQIEAPR-K------DYVIVET-PFHILCGHDDIIT-CLYVSVELDIVISGSKD-----G-----------TCVFHT 269 (413)
Q Consensus 215 ~~~~~~~~~~-~------~~~~~~~-~~~~~~~h~~~i~-~~~~~~~~~~l~s~~~d-----g-----------~i~vwd 269 (413)
.......... . ...-.++ .-.....-...+. .+++.++..++..+..+ + .|.-.|
T Consensus 198 ~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld 277 (527)
T TIGR03075 198 YTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARD 277 (527)
T ss_pred cCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEc
Confidence 2111000000 0 0000000 0000110112222 34566666655544411 2 577779
Q ss_pred ccCCeEEEEEeCCCC--------CceeeEEEccCCc---EEEEECCCCeEEEEEeC-Cceeee--------e----ecC-
Q 040361 270 LREGRYVRSLCHPSG--------SALSKLAASRHGR---IVLYGDDDLSLHLFSIN-GKHLAS--------S----ESN- 324 (413)
Q Consensus 270 ~~~~~~~~~~~~~~~--------~~v~~~~~~~~~~---~l~~~~~d~~i~i~d~~-~~~~~~--------~----~~~- 324 (413)
+++|+....+...+. ....-+.+..+|+ .++.+.++|.+++.|.+ ++.+.. . ...
T Consensus 278 ~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~ 357 (527)
T TIGR03075 278 PDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKT 357 (527)
T ss_pred cccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCC
Confidence 999999887764211 1112223334665 78899999999999987 444311 0 000
Q ss_pred -Cc----------------------------eeEEEecCCCCEEEEeCCC------------------------------
Q 040361 325 -GR----------------------------LNCLELSACGQFLVCGGDQ------------------------------ 345 (413)
Q Consensus 325 -~~----------------------------i~~~~~s~~~~~l~~~~~d------------------------------ 345 (413)
.+ -..++++|+..++++...+
T Consensus 358 g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~ 437 (527)
T TIGR03075 358 GRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPD 437 (527)
T ss_pred CCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCC
Confidence 00 0125666665555443222
Q ss_pred ---CeEEEEECCCCceEEEecCCCCcEEEEEEccCCeEEEEcCCCeEEEEEecCCccccccccc
Q 040361 346 ---GQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFLAGTKDGCLLVYSIENRRTSLPRNVK 406 (413)
Q Consensus 346 ---g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~dg~i~vw~~~~~~~~~~~~~~ 406 (413)
|.|.-+|+.+++.+.+.+.......+......+.+++++.||.++.+|.++++...+..+.
T Consensus 438 ~~~g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 438 DHMGSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred CCceeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 4678889999988876653222222222233455667888999999999999988766553
No 359
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.12 E-value=0.0059 Score=56.21 Aligned_cols=238 Identities=12% Similarity=0.137 Sum_probs=128.2
Q ss_pred EEEecCCCCEEEEeecCCC----eEEEEEcCCCcEEEEe-ecCCCeEEEEEECCCCCEEEEccCCC-----------cEE
Q 040361 138 TTMQTPSENFLITCGNWEN----SFQVIALNDGRVVQSI-RQHRDVVSCVAVTTDGSILATGSYDT-----------TVM 201 (413)
Q Consensus 138 ~~~~~~~~~~l~~~g~~d~----~i~i~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~dg-----------~i~ 201 (413)
...++|++++++.+-+..| .++++|+.+|+.+... ... ....+.|.+|++.|+....+. .|.
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~ 205 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY 205 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence 4667999999998755445 6999999999876532 221 222399999988876654333 266
Q ss_pred EEEeccccccccccccceeecCCCceeeecCceeeeecCCCC--eEEEEEecCCCEEEEeeCC----CcEEEEEccCC--
Q 040361 202 VWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDI--ITCLYVSVELDIVISGSKD----GTCVFHTLREG-- 273 (413)
Q Consensus 202 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--i~~~~~~~~~~~l~s~~~d----g~i~vwd~~~~-- 273 (413)
.|++.+.... -...+.+.... ...+..++++++++..... ..+.+.|+..+
T Consensus 206 ~~~~gt~~~~---------------------d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~ 264 (414)
T PF02897_consen 206 RHKLGTPQSE---------------------DELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGS 264 (414)
T ss_dssp EEETTS-GGG----------------------EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTT
T ss_pred EEECCCChHh---------------------CeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCC
Confidence 6666555410 12233333332 5678889999987643322 34777788764
Q ss_pred --eEEEEEeCCCCCceeeEEEccCCcEEEEECC---CCeEEEEEeCCce-----eeeeecCC--ceeEEEecCCCCEEEE
Q 040361 274 --RYVRSLCHPSGSALSKLAASRHGRIVLYGDD---DLSLHLFSINGKH-----LASSESNG--RLNCLELSACGQFLVC 341 (413)
Q Consensus 274 --~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~i~d~~~~~-----~~~~~~~~--~i~~~~~s~~~~~l~~ 341 (413)
.....+..... .+....-...+.+++.... ++.|...++.... .....+.. .+..+.. .+++|+.
T Consensus 265 ~~~~~~~l~~~~~-~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl 341 (414)
T PF02897_consen 265 PDAKPKLLSPRED-GVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVL 341 (414)
T ss_dssp SS-SEEEEEESSS-S-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEE
T ss_pred CcCCcEEEeCCCC-ceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEE
Confidence 22333332222 2332222234444444432 3567777776322 12233333 3444444 4555554
Q ss_pred e-CCCC--eEEEEECCCCceEEEecC-CCCcEEEEEEccCC--eEEE-Ec--CCCeEEEEEecCCcccc
Q 040361 342 G-GDQG--QIVVRSMNSLEVVRRYSG-VGKIITSLAVTPEE--CFLA-GT--KDGCLLVYSIENRRTSL 401 (413)
Q Consensus 342 ~-~~dg--~i~v~d~~~~~~~~~~~~-~~~~v~~~~~~~~~--~~l~-~~--~dg~i~vw~~~~~~~~~ 401 (413)
. ..++ .|+++++..+.....+.. ..+.|..+...+++ .++. .+ .-++++.||+.+++...
T Consensus 342 ~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~ 410 (414)
T PF02897_consen 342 SYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTL 410 (414)
T ss_dssp EEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEE
T ss_pred EEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEE
Confidence 4 3444 688999983344444432 33456666655553 2333 33 45788899998887553
No 360
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.07 E-value=0.0043 Score=51.24 Aligned_cols=241 Identities=11% Similarity=0.075 Sum_probs=140.0
Q ss_pred cceeEEEEecCCCCEEEEeecCCC-eEEEEEcCCCcEEEEeecCCCe--EEEEEECCCCCEEEEccCC-----CcEEEEE
Q 040361 133 GSQCFTTMQTPSENFLITCGNWEN-SFQVIALNDGRVVQSIRQHRDV--VSCVAVTTDGSILATGSYD-----TTVMVWE 204 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~g~~d~-~i~i~~~~~~~~~~~~~~h~~~--v~~~~~~~~~~~l~s~s~d-----g~i~iw~ 204 (413)
...+..+.++|.-..-++.+-.-| ...++|.++.+....+...++. --.=.|+|||.+|+..-.| |.|-+||
T Consensus 67 paR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd 146 (366)
T COG3490 67 PARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYD 146 (366)
T ss_pred ccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEe
Confidence 344556777777666665555555 4567888887766555321111 1123589999999876443 7799999
Q ss_pred eccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeC------------------CCcEE
Q 040361 205 VIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSK------------------DGTCV 266 (413)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~------------------dg~i~ 266 (413)
.+.+-. .+..+..|.-.-..+.|.+||+.++.+.. .-.+.
T Consensus 147 ~r~~fq----------------------rvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlv 204 (366)
T COG3490 147 AREGFQ----------------------RVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLV 204 (366)
T ss_pred cccccc----------------------eecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEE
Confidence 986541 34556677777778889999998887642 11344
Q ss_pred EEEccCCeEEEEEeCC---CCCceeeEEEccCCcEEEEECCCCe------EEEEEeCCceeeee--------ecCCceeE
Q 040361 267 FHTLREGRYVRSLCHP---SGSALSKLAASRHGRIVLYGDDDLS------LHLFSINGKHLASS--------ESNGRLNC 329 (413)
Q Consensus 267 vwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d~~------i~i~d~~~~~~~~~--------~~~~~i~~ 329 (413)
+.|..+|+.+.....+ ....+..++..++|..++.+-..|. +.-.-.+++.+... .....|-+
T Consensus 205 lld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigs 284 (366)
T COG3490 205 LLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGS 284 (366)
T ss_pred EEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhh
Confidence 4454555555443332 1235777777777766554432221 00000112222211 12245677
Q ss_pred EEecCCCCEEEEeCC-CCeEEEEECCCCceEEEecCCCCcEEEEEEccCCeEEEEcCCCeEEEEEecCCc
Q 040361 330 LELSACGQFLVCGGD-QGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFLAGTKDGCLLVYSIENRR 398 (413)
Q Consensus 330 ~~~s~~~~~l~~~~~-dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~dg~i~vw~~~~~~ 398 (413)
++.+.+..+++..+- .+...+||..+|..+..-.-. ....++-.. +-|++.+.+|.+.++.-...+
T Consensus 285 iA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~--daaGva~~~-~gf~vssg~G~~~~~s~~~~s 351 (366)
T COG3490 285 IAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALP--DAAGVAAAK-GGFAVSSGQGRIIFYSRAARS 351 (366)
T ss_pred eeecccCCeEEEecCCCCeEEEEEcCCCcEEeccccc--ccccceecc-CceEEecCCceEEeccccccC
Confidence 888766666655554 456778999999887644321 122333332 346777778888888554443
No 361
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.99 E-value=0.0013 Score=46.35 Aligned_cols=101 Identities=15% Similarity=0.210 Sum_probs=70.7
Q ss_pred eEEEEEec---CC-CEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCceee
Q 040361 244 ITCLYVSV---EL-DIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKHLA 319 (413)
Q Consensus 244 i~~~~~~~---~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 319 (413)
|+++++.. ++ +.|+.|+.|..|++|+ ....+.++... ..+..++-... ..++.+..+|+|-+|+-. ..+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~e~--~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~-~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEITET--DKVTSLCSLGG-GRFAYALANGTVGVYDRS-QRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEecc--cceEEEEEcCC-CEEEEEecCCEEEEEeCc-ceee
Confidence 56666654 32 5899999999999997 44666666654 36787877765 568899999999999864 3334
Q ss_pred eeecCCceeEEEecC-C--C-CEEEEeCCCCeEEE
Q 040361 320 SSESNGRLNCLELSA-C--G-QFLVCGGDQGQIVV 350 (413)
Q Consensus 320 ~~~~~~~i~~~~~s~-~--~-~~l~~~~~dg~i~v 350 (413)
....+..++++++.. + | .-|++|-.+|.|-+
T Consensus 76 RiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 76 RIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eeccCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 444455567766543 2 2 36889988888753
No 362
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.93 E-value=0.00026 Score=63.05 Aligned_cols=138 Identities=19% Similarity=0.311 Sum_probs=100.7
Q ss_pred EEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcE-------EEEECCCCeEEEEEeC--Cc-eeee----
Q 040361 255 IVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRI-------VLYGDDDLSLHLFSIN--GK-HLAS---- 320 (413)
Q Consensus 255 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------l~~~~~d~~i~i~d~~--~~-~~~~---- 320 (413)
++.++.....++-.|++.|+.+.....+.. |+-+.+.|+.+. -+.|-.+..|.-||++ +. .+..
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d--i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~k 425 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD--INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSK 425 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC--cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecc
Confidence 344666667888899999999999887653 666777776432 3456678899999998 33 2221
Q ss_pred -eecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEccCCeEEEEcCCCeEEEEEec
Q 040361 321 -SESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFLAGTKDGCLLVYSIE 395 (413)
Q Consensus 321 -~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~dg~i~vw~~~ 395 (413)
........|.+-..+| ++++|+.+|.|++||.-..+.-..+++...+|..+..+.+|+++.|..+..+.+-++.
T Consensus 426 qy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 426 QYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTL 500 (644)
T ss_pred ccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence 1223445566555444 8999999999999997433344567788899999999999999988888888887764
No 363
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.93 E-value=0.0015 Score=58.45 Aligned_cols=87 Identities=20% Similarity=0.278 Sum_probs=64.7
Q ss_pred CceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEE-EEEcc----------------C-CeEEE--Ec
Q 040361 325 GRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITS-LAVTP----------------E-ECFLA--GT 384 (413)
Q Consensus 325 ~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~-~~~~~----------------~-~~~l~--~~ 384 (413)
..+.+++.+|++++.++.+.-|.|.++|+.++..++.+++..+.=.. +.... . ..+|+ +-
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyap 387 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAP 387 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEec
Confidence 45788999999999999988999999999999988888876543111 11000 0 23454 77
Q ss_pred CCCeEEEEEecCCcccccccccccCCc
Q 040361 385 KDGCLLVYSIENRRTSLPRNVKSKASI 411 (413)
Q Consensus 385 ~dg~i~vw~~~~~~~~~~~~~~~~~~i 411 (413)
.-|.|-||.++.+.......+....++
T Consensus 388 rRg~lEvW~~~~g~Rv~a~~v~k~~rL 414 (415)
T PF14655_consen 388 RRGILEVWSMRQGPRVAAFNVGKGCRL 414 (415)
T ss_pred cCCeEEEEecCCCCEEEEEEeCCCcEE
Confidence 889999999999988887776655543
No 364
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.92 E-value=0.0032 Score=56.41 Aligned_cols=244 Identities=15% Similarity=0.217 Sum_probs=120.5
Q ss_pred cCCCCEEEEeec--------CCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEecccccccc
Q 040361 142 TPSENFLITCGN--------WENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEK 213 (413)
Q Consensus 142 ~~~~~~l~~~g~--------~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~ 213 (413)
|||++++++... ..+.+.|||+++++....... ...+....|+|+|+.++... ++.|.+++..++....
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~- 77 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQ- 77 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEE-
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEE-
Confidence 467777666221 145789999998766544433 56788899999999998875 5789999876653110
Q ss_pred ccccceeecCCCceeeecCceeeeecC-CCCeEEEEEecCCCEEEEeeCC-C----------------------------
Q 040361 214 RVRNMQIEAPRKDYVIVETPFHILCGH-DDIITCLYVSVELDIVISGSKD-G---------------------------- 263 (413)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~i~~~~~~~~~~~l~s~~~d-g---------------------------- 263 (413)
+.. .+ ...+..+.+-...+.- -+.-.++.|+||+++|+....| .
T Consensus 78 -lT~--dg---~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~ 151 (353)
T PF00930_consen 78 -LTT--DG---EPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKA 151 (353)
T ss_dssp -SES-------TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BT
T ss_pred -ecc--cc---ceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCC
Confidence 000 00 0000000000000000 1112456788888776654322 1
Q ss_pred -------cEEEEEccCCeEEE-EEe---CCCCCceeeEEEccCCcEEEEE--CCC---CeEEEEEeCCc-e--eeeeecC
Q 040361 264 -------TCVFHTLREGRYVR-SLC---HPSGSALSKLAASRHGRIVLYG--DDD---LSLHLFSINGK-H--LASSESN 324 (413)
Q Consensus 264 -------~i~vwd~~~~~~~~-~~~---~~~~~~v~~~~~~~~~~~l~~~--~~d---~~i~i~d~~~~-~--~~~~~~~ 324 (413)
.+.++|+.+++... ... ......+..+.|.+++..+++. ..+ ..+.++|.... . +......
T Consensus 152 G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~ 231 (353)
T PF00930_consen 152 GDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSD 231 (353)
T ss_dssp TS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESS
T ss_pred CCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCC
Confidence 23334554443321 111 1123356778888888844332 222 24666677522 1 1222223
Q ss_pred Cce---eEEEec-CCC-CEEEEeCCCCe--EEEEECCCCceEEEecCCCCcEEE-EEEccCCe--EEEEcCC--C--eEE
Q 040361 325 GRL---NCLELS-ACG-QFLVCGGDQGQ--IVVRSMNSLEVVRRYSGVGKIITS-LAVTPEEC--FLAGTKD--G--CLL 390 (413)
Q Consensus 325 ~~i---~~~~~s-~~~-~~l~~~~~dg~--i~v~d~~~~~~~~~~~~~~~~v~~-~~~~~~~~--~l~~~~d--g--~i~ 390 (413)
+.+ ....+. +++ .++.....+|. |++++...+. ...+....-.|.. +.+++++. ++++..+ + .|+
T Consensus 232 ~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY 310 (353)
T PF00930_consen 232 GWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLY 310 (353)
T ss_dssp SSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEE
T ss_pred cceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEE
Confidence 322 345554 555 45555556664 5566666655 3456545556755 66777754 3345442 2 444
Q ss_pred EEEec
Q 040361 391 VYSIE 395 (413)
Q Consensus 391 vw~~~ 395 (413)
.-+++
T Consensus 311 ~v~~~ 315 (353)
T PF00930_consen 311 RVSLD 315 (353)
T ss_dssp EEETT
T ss_pred EEEeC
Confidence 44555
No 365
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.89 E-value=0.012 Score=52.98 Aligned_cols=203 Identities=14% Similarity=0.167 Sum_probs=105.2
Q ss_pred cCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceee---eecCCCCeEEEEEe
Q 040361 174 QHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHI---LCGHDDIITCLYVS 250 (413)
Q Consensus 174 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~h~~~i~~~~~~ 250 (413)
...++|++++.+ |=-+++.|..+|.+.|.|++..... ....+.. -......++++.|.
T Consensus 84 ~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI------------------~~~~i~~~~~~~~~~~~vt~ieF~ 144 (395)
T PF08596_consen 84 AKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVI------------------YNENIRESFLSKSSSSYVTSIEFS 144 (395)
T ss_dssp --S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEE------------------EEEEGGG--T-SS----EEEEEEE
T ss_pred ccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEE------------------eeccccccccccccccCeeEEEEE
Confidence 346889999997 4459999999999999999665410 0000111 11133467788876
Q ss_pred c-----CC---CEEEEeeCCCcEEEEEcc---CCeEEEEEe---CCCCCceeeEE-EccC-C------------------
Q 040361 251 V-----EL---DIVISGSKDGTCVFHTLR---EGRYVRSLC---HPSGSALSKLA-ASRH-G------------------ 296 (413)
Q Consensus 251 ~-----~~---~~l~s~~~dg~i~vwd~~---~~~~~~~~~---~~~~~~v~~~~-~~~~-~------------------ 296 (413)
- |+ -.++.|+..|.+.+|.+. .+.....+. ......+..+. ++.+ |
T Consensus 145 vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~ 224 (395)
T PF08596_consen 145 VMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGIS 224 (395)
T ss_dssp EEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT--
T ss_pred EEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCC
Confidence 2 22 267889999999999874 122222211 11123444333 3211 0
Q ss_pred -cEEEEECCCCeEEEEEeCCceeeeeecCCc--eeEEEec-----CCCCEEEEeCCCCeEEEEECCCCceEEEecCCC--
Q 040361 297 -RIVLYGDDDLSLHLFSINGKHLASSESNGR--LNCLELS-----ACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVG-- 366 (413)
Q Consensus 297 -~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--i~~~~~s-----~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-- 366 (413)
.-+++...+..++++.+...+......+.. ...+.+- ..+..|++-..+|.|++|.+...+.+..+.-+.
T Consensus 225 i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~ 304 (395)
T PF08596_consen 225 IPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPL 304 (395)
T ss_dssp --EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS--
T ss_pred cCcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCcc
Confidence 123333445689999987443333222332 2233442 356678888899999999999999887776432
Q ss_pred --CcEEEEEEccCCeEEEEcCCCeEEEEEec
Q 040361 367 --KIITSLAVTPEECFLAGTKDGCLLVYSIE 395 (413)
Q Consensus 367 --~~v~~~~~~~~~~~l~~~~dg~i~vw~~~ 395 (413)
..+....++++|.++.-.....+.++.+-
T Consensus 305 d~~~~~~ssis~~Gdi~~~~gpsE~~l~sv~ 335 (395)
T PF08596_consen 305 DSRRLSSSSISRNGDIFYWTGPSEIQLFSVW 335 (395)
T ss_dssp -HHHHTT-EE-TTS-EEEE-SSSEEEEEEEE
T ss_pred ccccccccEECCCCCEEEEeCcccEEEEEEE
Confidence 23445677888887764444455555543
No 366
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.89 E-value=0.014 Score=51.59 Aligned_cols=168 Identities=15% Similarity=0.171 Sum_probs=100.3
Q ss_pred CeEEEEEcCCC----cEEEEe--ecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceee
Q 040361 156 NSFQVIALNDG----RVVQSI--RQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVI 229 (413)
Q Consensus 156 ~~i~i~~~~~~----~~~~~~--~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (413)
|.|.++++... ..+..+ ....++|++++-. ++. |+.+. .+.|.+|++...+
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~-------------------- 118 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSK-------------------- 118 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTS--------------------
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcc--------------------
Confidence 88999999874 222222 2357889998876 444 44443 4789999998776
Q ss_pred ecCceeeeecCC--CCeEEEEEecCCCEEEEeeCCCcEEEEEccC-CeEEEEEe-CCCCCceeeEEEccCCcEEEEECCC
Q 040361 230 VETPFHILCGHD--DIITCLYVSVELDIVISGSKDGTCVFHTLRE-GRYVRSLC-HPSGSALSKLAASRHGRIVLYGDDD 305 (413)
Q Consensus 230 ~~~~~~~~~~h~--~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d 305 (413)
.+.....+. ..+.++... +++++.|+....+.++..+. ...+..+. ......+.++.+-++++.++++..+
T Consensus 119 ---~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~ 193 (321)
T PF03178_consen 119 ---TLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKD 193 (321)
T ss_dssp ---SEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETT
T ss_pred ---cchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCC
Confidence 112222222 245555544 56999999888888875543 33233332 2223467888887666799999999
Q ss_pred CeEEEEEeCC--------c-eeee---eecCCceeEE---EecC--CCC------EEEEeCCCCeEEEE
Q 040361 306 LSLHLFSING--------K-HLAS---SESNGRLNCL---ELSA--CGQ------FLVCGGDQGQIVVR 351 (413)
Q Consensus 306 ~~i~i~d~~~--------~-~~~~---~~~~~~i~~~---~~s~--~~~------~l~~~~~dg~i~v~ 351 (413)
|.+.++..+. . .+.. ......|+++ ++.| .+. .++.++.+|.|.+.
T Consensus 194 gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 194 GNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp SEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred CeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 9999998752 2 2322 3456677777 5555 222 47788888888744
No 367
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.88 E-value=4.9e-05 Score=42.70 Aligned_cols=39 Identities=33% Similarity=0.681 Sum_probs=34.5
Q ss_pred CcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEE
Q 040361 166 GRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWE 204 (413)
Q Consensus 166 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~ 204 (413)
++....+..|...|.++.|.+++..+++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345667778999999999999999999999999999996
No 368
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=0.00012 Score=66.49 Aligned_cols=95 Identities=16% Similarity=0.158 Sum_probs=77.8
Q ss_pred CCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeE-EEEEecCCC
Q 040361 176 RDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIIT-CLYVSVELD 254 (413)
Q Consensus 176 ~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~-~~~~~~~~~ 254 (413)
...|.-+.|+|.-..+|++..+|.|.+..+.-. .+.++.-|...++ +++|.|||+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~q------------------------Rlwtip~p~~~v~~sL~W~~DGk 75 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLNWQ------------------------RLWTIPIPGENVTASLCWRPDGK 75 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEeccc------------------------eeEeccCCCCccceeeeecCCCC
Confidence 345677899999999999999999999988733 3666766777777 999999999
Q ss_pred EEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEcc
Q 040361 255 IVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASR 294 (413)
Q Consensus 255 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~ 294 (413)
.++.|-.||+|++.|..++..+..........|.++.|++
T Consensus 76 llaVg~kdG~I~L~Dve~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 76 LLAVGFKDGTIRLHDVEKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred EEEEEecCCeEEEEEccCCCceeccccccccchheeeccc
Confidence 9999999999999999999988875433345677777764
No 369
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.78 E-value=0.00088 Score=59.87 Aligned_cols=148 Identities=16% Similarity=0.245 Sum_probs=106.0
Q ss_pred cCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCC-------EEEEccCCCcEEEEEeccccccccc
Q 040361 142 TPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGS-------ILATGSYDTTVMVWEVIRARAPEKR 214 (413)
Q Consensus 142 ~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-------~l~s~s~dg~i~iw~~~~~~~~~~~ 214 (413)
-.+.+.++..|.....++-.|++.|+.+..+.-|.+ |+-+.+.|+.+ .-+.|-.|..|.-||.+-....
T Consensus 342 ~~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~--- 417 (644)
T KOG2395|consen 342 RADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN--- 417 (644)
T ss_pred ccccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc---
Confidence 345666777777677899999999999999988777 88888888642 2345667889999998743310
Q ss_pred cccceeecCCCceeeecCceeeeecC----CCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeE
Q 040361 215 VRNMQIEAPRKDYVIVETPFHILCGH----DDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKL 290 (413)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~h----~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~ 290 (413)
.+...++| .....|.+-..+| +++.|+.+|.|++||- .+....+....-+.+|..+
T Consensus 418 ------------------kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hV 477 (644)
T KOG2395|consen 418 ------------------KLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHV 477 (644)
T ss_pred ------------------eeeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeE
Confidence 11122222 2345666665554 7999999999999997 6665555555557899999
Q ss_pred EEccCCcEEEEECCCCeEEEEEeC
Q 040361 291 AASRHGRIVLYGDDDLSLHLFSIN 314 (413)
Q Consensus 291 ~~~~~~~~l~~~~~d~~i~i~d~~ 314 (413)
..+.+|++|++.+.. .+.+.++.
T Consensus 478 dvtadGKwil~Tc~t-yLlLi~t~ 500 (644)
T KOG2395|consen 478 DVTADGKWILATCKT-YLLLIDTL 500 (644)
T ss_pred EeeccCcEEEEeccc-EEEEEEEe
Confidence 999999999887754 66666663
No 370
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.78 E-value=0.014 Score=50.51 Aligned_cols=191 Identities=10% Similarity=0.012 Sum_probs=112.9
Q ss_pred EECCCCC-EEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeC
Q 040361 183 AVTTDGS-ILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSK 261 (413)
Q Consensus 183 ~~~~~~~-~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~ 261 (413)
.|.++.. ++.+--..+.|.-|+..++. ...+. +.+.+.++..-..+..|+++.
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~------------------------~~~~~-~p~~~~~~~~~d~~g~Lv~~~- 84 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGK------------------------KRVFP-SPGGFSSGALIDAGGRLIACE- 84 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCc------------------------eEEEE-CCCCcccceeecCCCeEEEEc-
Confidence 3566655 34455566778888876554 22222 334445555444445555543
Q ss_pred CCcEEEEEccCCeEEEEEeC----CCCCceeeEEEccCCcEEEEECC-----------CCeEEEEEeCCceeeeee-cCC
Q 040361 262 DGTCVFHTLREGRYVRSLCH----PSGSALSKLAASRHGRIVLYGDD-----------DLSLHLFSINGKHLASSE-SNG 325 (413)
Q Consensus 262 dg~i~vwd~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~-----------d~~i~i~d~~~~~~~~~~-~~~ 325 (413)
.-+.+++.+++..+..+.. ......+...+.|+|.+.+.... -|.|+.+|..+....... +-.
T Consensus 85 -~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~ 163 (307)
T COG3386 85 -HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLT 163 (307)
T ss_pred -cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEE
Confidence 3456677666655333321 11245678889999887776544 145666665444444433 245
Q ss_pred ceeEEEecCCCCEEEEeCC-CCeEEEEECCC--Cc-----eEEEecCCCCcEEEEEEccCCeEEE-EcCCC-eEEEEEec
Q 040361 326 RLNCLELSACGQFLVCGGD-QGQIVVRSMNS--LE-----VVRRYSGVGKIITSLAVTPEECFLA-GTKDG-CLLVYSIE 395 (413)
Q Consensus 326 ~i~~~~~s~~~~~l~~~~~-dg~i~v~d~~~--~~-----~~~~~~~~~~~v~~~~~~~~~~~l~-~~~dg-~i~vw~~~ 395 (413)
..+.++||||++.|+.+.. .+.|+-|++.. +. ....+....+..-.++...+|.+-+ +..+| .|..|+.+
T Consensus 164 ~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd 243 (307)
T COG3386 164 IPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD 243 (307)
T ss_pred ecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC
Confidence 5688999999988777755 47888887752 11 1122223345667788888887774 44443 89999988
Q ss_pred CCcccc
Q 040361 396 NRRTSL 401 (413)
Q Consensus 396 ~~~~~~ 401 (413)
++...
T Consensus 244 -G~l~~ 248 (307)
T COG3386 244 -GKLLG 248 (307)
T ss_pred -CcEEE
Confidence 55443
No 371
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.77 E-value=0.011 Score=50.98 Aligned_cols=144 Identities=22% Similarity=0.236 Sum_probs=88.5
Q ss_pred CCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcE
Q 040361 186 TDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTC 265 (413)
Q Consensus 186 ~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i 265 (413)
..++.|+.|..+| +.+++...... ..... +...|..+...++-+.+++-+ |+.+
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~----------------------~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l 58 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSK----------------------PTRIL--KLSSITQLSVLPELNLLLVLS-DGQL 58 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCcc----------------------ceeEe--ecceEEEEEEecccCEEEEEc-CCcc
Confidence 3578899999998 89999833221 11111 223399999999888776665 5999
Q ss_pred EEEEccCCeEEEEE-------------eCCCCCceeeEE--EccCCcEEEEECCCCeEEEEEeCC------ceeeeeecC
Q 040361 266 VFHTLREGRYVRSL-------------CHPSGSALSKLA--ASRHGRIVLYGDDDLSLHLFSING------KHLASSESN 324 (413)
Q Consensus 266 ~vwd~~~~~~~~~~-------------~~~~~~~v~~~~--~~~~~~~l~~~~~d~~i~i~d~~~------~~~~~~~~~ 324 (413)
.++++......... .......+...+ -...+...++......|.+|.... .........
T Consensus 59 ~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp 138 (275)
T PF00780_consen 59 YVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP 138 (275)
T ss_pred EEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC
Confidence 99998765443311 111122344444 122333344444445888888763 234445677
Q ss_pred CceeEEEecCCCCEEEEeCCCCeEEEEECCCCce
Q 040361 325 GRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEV 358 (413)
Q Consensus 325 ~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~ 358 (413)
..+..++|. ++.++.|..++ ..+.|+.++..
T Consensus 139 ~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~ 169 (275)
T PF00780_consen 139 DPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSP 169 (275)
T ss_pred CCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCc
Confidence 889999997 66677776554 66777775543
No 372
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.00018 Score=65.28 Aligned_cols=93 Identities=15% Similarity=0.214 Sum_probs=75.7
Q ss_pred CCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCcee-eEEEccCCcEEEEECCCCeEEEEEeC-Cce
Q 040361 240 HDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALS-KLAASRHGRIVLYGDDDLSLHLFSIN-GKH 317 (413)
Q Consensus 240 h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~ 317 (413)
-...+.-+.|+|.-.++|.+..+|.+.+..+. .+.+.++..+.. .++ +++|.|||+.|++|-.||+|++.|.+ +..
T Consensus 19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~-~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGE-NVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred cccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCC-ccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence 34467788999999999999999999999987 788888886533 455 99999999999999999999999998 444
Q ss_pred eee--eecCCceeEEEecC
Q 040361 318 LAS--SESNGRLNCLELSA 334 (413)
Q Consensus 318 ~~~--~~~~~~i~~~~~s~ 334 (413)
+.. ......|.++.|++
T Consensus 97 l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 97 LVSFLFSVETDISKGIWDR 115 (665)
T ss_pred eeccccccccchheeeccc
Confidence 444 34566777887763
No 373
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.76 E-value=0.0055 Score=43.29 Aligned_cols=99 Identities=16% Similarity=0.207 Sum_probs=69.2
Q ss_pred eeeEEEcc---C-CcEEEEECCCCeEEEEEeCCceeeeeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEe
Q 040361 287 LSKLAASR---H-GRIVLYGDDDLSLHLFSINGKHLASSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRY 362 (413)
Q Consensus 287 v~~~~~~~---~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~ 362 (413)
|+++++.. + .+.|++|+.|..|++|+-. ..+........++++.-... ..++.+..+|+|-+|+.. +.+.+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~-e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlWRi 77 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD-EIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLWRI 77 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC-cEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceeeee
Confidence 45555544 2 2679999999999999865 44555666778888877765 568899999999999863 344445
Q ss_pred cCCCCcEEEEEEcc-CC----eEEEEcCCCeEE
Q 040361 363 SGVGKIITSLAVTP-EE----CFLAGTKDGCLL 390 (413)
Q Consensus 363 ~~~~~~v~~~~~~~-~~----~~l~~~~dg~i~ 390 (413)
+. ...++++.+.. ++ .+++|-.+|.|-
T Consensus 78 KS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 78 KS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred cc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 43 33366665543 33 588888888774
No 374
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.71 E-value=5.3e-05 Score=60.05 Aligned_cols=141 Identities=15% Similarity=0.172 Sum_probs=88.5
Q ss_pred EEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeC--Cceeeee-ecCCceeE-EE
Q 040361 256 VISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSIN--GKHLASS-ESNGRLNC-LE 331 (413)
Q Consensus 256 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~-~~~~~i~~-~~ 331 (413)
+..-+.||.|.-++++..+....-....... .....-+..+++|+.+|.|++|+.+ +...... .....+.+ +.
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip 109 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIP 109 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceeccc
Confidence 4445668888887776544322111111111 2222345679999999999999987 2222211 11222222 22
Q ss_pred ecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCC-CcEEEEEEccCCeEEE-E--cCCCeEEEEEecCCcc
Q 040361 332 LSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVG-KIITSLAVTPEECFLA-G--TKDGCLLVYSIENRRT 399 (413)
Q Consensus 332 ~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~-~--~~dg~i~vw~~~~~~~ 399 (413)
--.++.+..++..+|.|+.|++.-.+.+.....|. .++..+..+..+.++. + |.|..++.|+++.-+.
T Consensus 110 ~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~d 181 (238)
T KOG2444|consen 110 NGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKIKD 181 (238)
T ss_pred cccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhhhc
Confidence 33345688899999999999999888887777777 5666666665555553 4 8889999999876443
No 375
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.70 E-value=0.0032 Score=59.80 Aligned_cols=147 Identities=20% Similarity=0.158 Sum_probs=88.4
Q ss_pred CCeEEEEEecCCCEEEEee------CCC--cEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCC--------
Q 040361 242 DIITCLYVSVELDIVISGS------KDG--TCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDD-------- 305 (413)
Q Consensus 242 ~~i~~~~~~~~~~~l~s~~------~dg--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------- 305 (413)
..+...+++|+++.++... .|. .|.+++. .+.. ..+.. +.....-.|+|+|..+++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~--g~~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLE--GHSLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeec--CCCCCCceECCCCCceEEEecCcceEEEec
Confidence 4677889999999876554 243 4555554 2222 33322 2247778999998876665422
Q ss_pred ----CeEEEEEeCCceeeeeecCCceeEEEecCCCCEEEEeCCCCeEEE---EECCCCce-E---EEec-CCCCcEEEEE
Q 040361 306 ----LSLHLFSINGKHLASSESNGRLNCLELSACGQFLVCGGDQGQIVV---RSMNSLEV-V---RRYS-GVGKIITSLA 373 (413)
Q Consensus 306 ----~~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v---~d~~~~~~-~---~~~~-~~~~~v~~~~ 373 (413)
+.+.+.++++..... ...+.|..+.|||||..++... +|.|++ -....|+. + ..+. .-...+.++.
T Consensus 426 ~~~~gql~~~~vd~ge~~~-~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~ 503 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS-RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLD 503 (591)
T ss_pred cCCCceEEEEeccCchhhh-ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccce
Confidence 234333444322222 3456799999999999888765 477777 44444541 1 1122 2334468899
Q ss_pred EccCCeEEEEcCCCeEEEEEe
Q 040361 374 VTPEECFLAGTKDGCLLVYSI 394 (413)
Q Consensus 374 ~~~~~~~l~~~~dg~i~vw~~ 394 (413)
|..++.++++..++.-.+|.+
T Consensus 504 W~~~~~L~V~~~~~~~~v~~v 524 (591)
T PRK13616 504 WRTGDSLVVGRSDPEHPVWYV 524 (591)
T ss_pred EecCCEEEEEecCCCCceEEE
Confidence 999998776554444444544
No 376
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.67 E-value=0.009 Score=56.84 Aligned_cols=182 Identities=15% Similarity=0.124 Sum_probs=102.2
Q ss_pred CeEEEEEECCCCCEEEEcc------CCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEe
Q 040361 177 DVVSCVAVTTDGSILATGS------YDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVS 250 (413)
Q Consensus 177 ~~v~~~~~~~~~~~l~s~s------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~ 250 (413)
..+...+++|||+.++... .|+.-.+|-...+.. ......+. ..+.-.|+
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~----------------------~~~lt~g~--~~t~PsWs 405 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV----------------------AVQVLEGH--SLTRPSWS 405 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc----------------------ceeeecCC--CCCCceEC
Confidence 4678899999999887655 344445555433321 11112222 36788899
Q ss_pred cCCCEEEEeeCC------------CcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEE---EEeCC
Q 040361 251 VELDIVISGSKD------------GTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHL---FSING 315 (413)
Q Consensus 251 ~~~~~l~s~~~d------------g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i---~d~~~ 315 (413)
|+++.+.+.... +.+.+.++..+.... .....|..+.|+|||..++... ++.|++ -...+
T Consensus 406 pDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~----~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~ 480 (591)
T PRK13616 406 LDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS----RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTED 480 (591)
T ss_pred CCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh----ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCC
Confidence 998877766432 222222333322221 1134699999999999888766 467776 33222
Q ss_pred ceeee-------eecCCceeEEEecCCCCEEEEeCCCCeEEEEECC-CCceEEEecC--CCCcEEEEEEccCCeEEEEcC
Q 040361 316 KHLAS-------SESNGRLNCLELSACGQFLVCGGDQGQIVVRSMN-SLEVVRRYSG--VGKIITSLAVTPEECFLAGTK 385 (413)
Q Consensus 316 ~~~~~-------~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~-~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~ 385 (413)
..... ......+..+.|..++.++ ++..++...+|.+. +|.....+.. ...++.+++=+++ .+++...
T Consensus 481 G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~-~iyv~~~ 558 (591)
T PRK13616 481 GQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS-TVYVTDA 558 (591)
T ss_pred CceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc-eEEEEcC
Confidence 22111 1233346889999999855 55444444455433 1322222232 2566778877764 4556666
Q ss_pred CCeE
Q 040361 386 DGCL 389 (413)
Q Consensus 386 dg~i 389 (413)
+|.+
T Consensus 559 ~g~~ 562 (591)
T PRK13616 559 RAVL 562 (591)
T ss_pred CceE
Confidence 6633
No 377
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.59 E-value=0.084 Score=51.45 Aligned_cols=304 Identities=9% Similarity=0.031 Sum_probs=157.9
Q ss_pred CeEEEEeecCCcEEEEecCceEEEE------------EeeccCCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccc
Q 040361 63 SGIVYVGMLDSSIVLVNQGLTLSVK------------MWLTTQLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESF 130 (413)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 130 (413)
++++++|..+..++......+...- -.....+.-|+.+|.++..||.+..+...............++
T Consensus 548 s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~l 627 (1096)
T KOG1897|consen 548 SRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTL 627 (1096)
T ss_pred ceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEcccccccc
Confidence 4577888777665555433332211 1122345666889999999998766542222222333333333
Q ss_pred eecceeEEEEecCCC-CEEEEeecCCCeEEEEEcCCCcEEE-EeecCCCeEE-EEEECCC--CCEEEEccCCCcEEEEEe
Q 040361 131 ELGSQCFTTMQTPSE-NFLITCGNWENSFQVIALNDGRVVQ-SIRQHRDVVS-CVAVTTD--GSILATGSYDTTVMVWEV 205 (413)
Q Consensus 131 ~~~~~~~~~~~~~~~-~~l~~~g~~d~~i~i~~~~~~~~~~-~~~~h~~~v~-~~~~~~~--~~~l~s~s~dg~i~iw~~ 205 (413)
+.....+. .|+..+ ..+++ .+ |.-.-+|.. +++... .+.- ..+. .+.|+.+ ...|+++.. +.+++..+
T Consensus 628 Gt~P~~Lr-~f~sk~~t~vfa-~s-drP~viY~~-n~kLv~spls~--kev~~~c~f~s~a~~d~l~~~~~-~~l~i~ti 700 (1096)
T KOG1897|consen 628 GTQPISLR-TFSSKSRTAVFA-LS-DRPTVIYSS-NGKLVYSPLSL--KEVNHMCPFNSDAYPDSLASANG-GALTIGTI 700 (1096)
T ss_pred CCCCcEEE-EEeeCCceEEEE-eC-CCCEEEEec-CCcEEEeccch--HHhhhhcccccccCCceEEEecC-CceEEEEe
Confidence 32222222 234444 44444 33 666666654 334332 1110 1111 1223322 334655543 56777777
Q ss_pred ccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEee-----------CC---CcEEEEEcc
Q 040361 206 IRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGS-----------KD---GTCVFHTLR 271 (413)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~-----------~d---g~i~vwd~~ 271 (413)
+.-+... ++++.-+ .....+++.+....+.+.+ +. ..++++|-.
T Consensus 701 d~iqkl~---------------------irtvpl~-~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~n 758 (1096)
T KOG1897|consen 701 DEIQKLH---------------------IRTVPLG-ESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQN 758 (1096)
T ss_pred cchhhcc---------------------eeeecCC-CChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCC
Confidence 6544211 1111111 1123333333222222111 11 247778877
Q ss_pred CCeEEEEEeCCCCCc---eeeEEEccC-CcEEEEECC----------CCeEEEEEeCC-ceeee---eecCCceeEEEec
Q 040361 272 EGRYVRSLCHPSGSA---LSKLAASRH-GRIVLYGDD----------DLSLHLFSING-KHLAS---SESNGRLNCLELS 333 (413)
Q Consensus 272 ~~~~~~~~~~~~~~~---v~~~~~~~~-~~~l~~~~~----------d~~i~i~d~~~-~~~~~---~~~~~~i~~~~~s 333 (413)
+.+.+...+...... +.+..|..| +.++++|.. .|.|.+|.... +.+.. ....+.+.++..-
T Consensus 759 Tf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f 838 (1096)
T KOG1897|consen 759 TFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF 838 (1096)
T ss_pred ceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh
Confidence 777666554433333 344447766 667777752 47788887764 33332 2344555555432
Q ss_pred CCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEccCCeEE-EEcCCCeEEEEEecCCc
Q 040361 334 ACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFL-AGTKDGCLLVYSIENRR 398 (413)
Q Consensus 334 ~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~dg~i~vw~~~~~~ 398 (413)
+|+++|.- +..|++|+..+.+.++.-..+..++..+...-.|..+ +|..=+.+.+-..+..+
T Consensus 839 -ngkllA~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~e 901 (1096)
T KOG1897|consen 839 -NGKLLAGI--NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDE 901 (1096)
T ss_pred -CCeEEEec--CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccC
Confidence 56666654 4589999999887776666778888888887776544 57666666666555544
No 378
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.59 E-value=0.087 Score=51.37 Aligned_cols=271 Identities=13% Similarity=0.149 Sum_probs=138.3
Q ss_pred cceecceeEEEEecCCCCE---EEEeecCCCeEEEEE-cCCCcEEEEe--ec--CCCeEEEEEECCCCCEEEEccCCCcE
Q 040361 129 SFELGSQCFTTMQTPSENF---LITCGNWENSFQVIA-LNDGRVVQSI--RQ--HRDVVSCVAVTTDGSILATGSYDTTV 200 (413)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~---l~~~g~~d~~i~i~~-~~~~~~~~~~--~~--h~~~v~~~~~~~~~~~l~s~s~dg~i 200 (413)
.++....|+.+.-.++++. +++.|.|+..+.+.- ..+...+... .+ -...|.-..+-.|..+|+++..||.+
T Consensus 528 ~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l 607 (1096)
T KOG1897|consen 528 EFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGAL 607 (1096)
T ss_pred eecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceE
Confidence 3444444555544444555 888899888665543 3344333222 11 23445556666678899999999999
Q ss_pred EEEEeccccccccccccceee--cC--------CC-ceeeecCceeeeecCCCCe----------EE-EEEecC--CCEE
Q 040361 201 MVWEVIRARAPEKRVRNMQIE--AP--------RK-DYVIVETPFHILCGHDDII----------TC-LYVSVE--LDIV 256 (413)
Q Consensus 201 ~iw~~~~~~~~~~~~~~~~~~--~~--------~~-~~~~~~~~~~~~~~h~~~i----------~~-~~~~~~--~~~l 256 (413)
..+.+..........+....+ ++ .. ........-.....+.+.. .. +.|+.+ ...+
T Consensus 608 ~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l 687 (1096)
T KOG1897|consen 608 LYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSL 687 (1096)
T ss_pred EEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhcccccccCCceE
Confidence 888776544322211111111 11 00 1111111111222222211 00 112111 1234
Q ss_pred EEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCC--------------CeEEEEEeCCceeeee-
Q 040361 257 ISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDD--------------LSLHLFSINGKHLASS- 321 (413)
Q Consensus 257 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------------~~i~i~d~~~~~~~~~- 321 (413)
+++. .+.+++--+..-+.+..-..+.+.....+++.+....+.+.+.. ..++++|-++-.....
T Consensus 688 ~~~~-~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~h 766 (1096)
T KOG1897|consen 688 ASAN-GGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSH 766 (1096)
T ss_pred EEec-CCceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeec
Confidence 5444 44566655544333322223334467778887755554443321 1366677664443321
Q ss_pred -----ecCCceeEEEecCC-CCEEEEeC----------CCCeEEEEECCCCceEEEecC--CCCcEEEEEEccCCeEEEE
Q 040361 322 -----ESNGRLNCLELSAC-GQFLVCGG----------DQGQIVVRSMNSLEVVRRYSG--VGKIITSLAVTPEECFLAG 383 (413)
Q Consensus 322 -----~~~~~i~~~~~s~~-~~~l~~~~----------~dg~i~v~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~ 383 (413)
.....+.++.|..| +.++++|+ ..|.|.||.+..++.+..... -.+.+.++..- +|+++||
T Consensus 767 ef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngkllA~ 845 (1096)
T KOG1897|consen 767 EFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-NGKLLAG 845 (1096)
T ss_pred cccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-CCeEEEe
Confidence 11234555668877 77888875 348888888877444433321 24556665433 5777764
Q ss_pred cCCCeEEEEEecCCccccc
Q 040361 384 TKDGCLLVYSIENRRTSLP 402 (413)
Q Consensus 384 ~~dg~i~vw~~~~~~~~~~ 402 (413)
-...|++|+..+++....
T Consensus 846 -In~~vrLye~t~~~eLr~ 863 (1096)
T KOG1897|consen 846 -INQSVRLYEWTTERELRI 863 (1096)
T ss_pred -cCcEEEEEEccccceehh
Confidence 346799999988855443
No 379
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.54 E-value=0.00023 Score=39.73 Aligned_cols=37 Identities=27% Similarity=0.303 Sum_probs=33.0
Q ss_pred ceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEE
Q 040361 233 PFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHT 269 (413)
Q Consensus 233 ~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd 269 (413)
+...+..|...|.++.|.+++..+++++.|+.+++||
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4566678999999999999999999999999999996
No 380
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.46 E-value=0.066 Score=49.31 Aligned_cols=193 Identities=13% Similarity=0.121 Sum_probs=106.0
Q ss_pred eEEEEEECCCCCEEEEc-c----CCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecC
Q 040361 178 VVSCVAVTTDGSILATG-S----YDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVE 252 (413)
Q Consensus 178 ~v~~~~~~~~~~~l~s~-s----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~ 252 (413)
.+....++||+++++.+ + ....++++|+.+++.. ...+.. .....+.|.++
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l----------------------~d~i~~--~~~~~~~W~~d 180 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFL----------------------PDGIEN--PKFSSVSWSDD 180 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEE----------------------EEEEEE--EESEEEEECTT
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCc----------------------CCcccc--cccceEEEeCC
Confidence 34467899999998754 2 2345999999888621 111111 11234899999
Q ss_pred CCEEEEeeCCC-----------cEEEEEccCCeEE--EEEeCCCCCc-eeeEEEccCCcEEEEECC---C-CeEEEEEeC
Q 040361 253 LDIVISGSKDG-----------TCVFHTLREGRYV--RSLCHPSGSA-LSKLAASRHGRIVLYGDD---D-LSLHLFSIN 314 (413)
Q Consensus 253 ~~~l~s~~~dg-----------~i~vwd~~~~~~~--~~~~~~~~~~-v~~~~~~~~~~~l~~~~~---d-~~i~i~d~~ 314 (413)
++.|+-...+. .|+.|++.+.... ..+....... ...+..++++++++.... + ..+++.++.
T Consensus 181 ~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~ 260 (414)
T PF02897_consen 181 GKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLD 260 (414)
T ss_dssp SSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECC
T ss_pred CCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecc
Confidence 88765443322 3788888766432 3344333333 567888999998775432 2 457788887
Q ss_pred Cc-----eeee-eec-CCceeEEEecCCCCEEEEe---CCCCeEEEEECCCCce---EEEecCCCC--cEEEEEEccCCe
Q 040361 315 GK-----HLAS-SES-NGRLNCLELSACGQFLVCG---GDQGQIVVRSMNSLEV---VRRYSGVGK--IITSLAVTPEEC 379 (413)
Q Consensus 315 ~~-----~~~~-~~~-~~~i~~~~~s~~~~~l~~~---~~dg~i~v~d~~~~~~---~~~~~~~~~--~v~~~~~~~~~~ 379 (413)
.. .... ... .+....+... .+.+++.. ..++.|.-.++.+... ...+..+.. .+..+....+..
T Consensus 261 ~~~~~~~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L 339 (414)
T PF02897_consen 261 DGGSPDAKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYL 339 (414)
T ss_dssp CTTTSS-SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEE
T ss_pred ccCCCcCCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEE
Confidence 53 2222 222 2333333333 44444443 2346787788887652 224444554 466666654444
Q ss_pred EEEEcCC--CeEEEEEec
Q 040361 380 FLAGTKD--GCLLVYSIE 395 (413)
Q Consensus 380 ~l~~~~d--g~i~vw~~~ 395 (413)
++....+ ..|+++++.
T Consensus 340 vl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 340 VLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp EEEEEETTEEEEEEEETT
T ss_pred EEEEEECCccEEEEEECC
Confidence 4444444 458888988
No 381
>PHA02713 hypothetical protein; Provisional
Probab=97.42 E-value=0.023 Score=54.15 Aligned_cols=144 Identities=10% Similarity=0.057 Sum_probs=75.2
Q ss_pred CCCEEEEeeCCC-----cEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCC--------------------
Q 040361 252 ELDIVISGSKDG-----TCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDL-------------------- 306 (413)
Q Consensus 252 ~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-------------------- 306 (413)
++++.+.|+.++ .+..||..+.+-...-..+.. ....-+..-++++.+.|+.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~-r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~ 429 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIA-LSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTH 429 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcc-cccccEEEECCEEEEEeCCCccccccccccccccccccccc
Confidence 567777787654 477899876643321111111 111111223677778777542
Q ss_pred ---eEEEEEeCCceeeeeec--CCceeEEEecCCCCEEEEeCCC------CeEEEEECCC---CceEEEecCCCCcEEEE
Q 040361 307 ---SLHLFSINGKHLASSES--NGRLNCLELSACGQFLVCGGDQ------GQIVVRSMNS---LEVVRRYSGVGKIITSL 372 (413)
Q Consensus 307 ---~i~i~d~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~~d------g~i~v~d~~~---~~~~~~~~~~~~~v~~~ 372 (413)
.+..||+....-..... ......-+..-+|+..+.|+.+ ..+..||..+ +..+..++...... ++
T Consensus 430 ~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~-~~ 508 (557)
T PHA02713 430 SSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSAL-HT 508 (557)
T ss_pred ccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccc-ee
Confidence 47778877543322110 1111111122257777777654 2467899886 33444444333332 23
Q ss_pred EEccCCe-EEEEcCCC--eEEEEEecCCc
Q 040361 373 AVTPEEC-FLAGTKDG--CLLVYSIENRR 398 (413)
Q Consensus 373 ~~~~~~~-~l~~~~dg--~i~vw~~~~~~ 398 (413)
+.. +++ +++|+.|| .+-.||..+.+
T Consensus 509 ~~~-~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 509 ILH-DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred EEE-CCEEEEEeeecceeehhhcCccccc
Confidence 333 455 44688888 67778877654
No 382
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.36 E-value=0.053 Score=51.71 Aligned_cols=214 Identities=14% Similarity=0.129 Sum_probs=108.6
Q ss_pred CeEEEEEcCCCcEEEEeec-CCCeEEEEEECCCCCEEEEccCC-C-----cEEEEEeccccccccccccceeecCCCcee
Q 040361 156 NSFQVIALNDGRVVQSIRQ-HRDVVSCVAVTTDGSILATGSYD-T-----TVMVWEVIRARAPEKRVRNMQIEAPRKDYV 228 (413)
Q Consensus 156 ~~i~i~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~s~d-g-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (413)
..+..||..+++....-.- +...-.+++.. ++...++|+.| | ++..||..+.+. ..+
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W--~~~------------- 364 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQW--TPV------------- 364 (571)
T ss_pred ceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCce--ecc-------------
Confidence 3788888877644332221 12222334443 45788889988 3 466677666551 111
Q ss_pred eecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCc-----EEEEEccCCeEEEEEeCCCCCceeeE-EEccCCcEEEEE
Q 040361 229 IVETPFHILCGHDDIITCLYVSVELDIVISGSKDGT-----CVFHTLREGRYVRSLCHPSGSALSKL-AASRHGRIVLYG 302 (413)
Q Consensus 229 ~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~-----i~vwd~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~~~ 302 (413)
..+.......... .-+|.+.+.|+.||. +-.||..+.+-...-.... ..... ...-+|.+.++|
T Consensus 365 ------a~M~~~R~~~~v~--~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~--~r~~~gv~~~~g~iYi~G 434 (571)
T KOG4441|consen 365 ------APMNTKRSDFGVA--VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT--RRSGHGVAVLGGKLYIIG 434 (571)
T ss_pred ------CCccCccccceeE--EECCEEEEEeccccccccccEEEecCCCCcccccCCCCc--ceeeeEEEEECCEEEEEc
Confidence 1111111111111 125678888988874 6667766554322211111 12222 223367778888
Q ss_pred CCCC------eEEEEEeCCceeeeee---cCCceeEEEecCCCCEEEEeCCCC-----eEEEEECCCCceEE--EecCCC
Q 040361 303 DDDL------SLHLFSINGKHLASSE---SNGRLNCLELSACGQFLVCGGDQG-----QIVVRSMNSLEVVR--RYSGVG 366 (413)
Q Consensus 303 ~~d~------~i~i~d~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~dg-----~i~v~d~~~~~~~~--~~~~~~ 366 (413)
+.++ .+..||.....-.... ....-..++. -++...++|+.|+ +|..||..+.+-.. .+....
T Consensus 435 G~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~r 513 (571)
T KOG4441|consen 435 GGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPR 513 (571)
T ss_pred CcCCCccccceEEEEcCCCCceeecCCcccccccceEEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccc
Confidence 7554 5778888754433211 1111111222 2677888888776 37778887654332 222222
Q ss_pred CcEEEEEEccCCeEEEEcCCCe-----EEEEEecCC
Q 040361 367 KIITSLAVTPEECFLAGTKDGC-----LLVYSIENR 397 (413)
Q Consensus 367 ~~v~~~~~~~~~~~l~~~~dg~-----i~vw~~~~~ 397 (413)
..+ .++...+..+++|+.||. |-.||..+.
T Consensus 514 s~~-g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 514 SAV-GVVVLGGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred ccc-cEEEECCEEEEEecccCccccceeEEcCCCCC
Confidence 222 223332334667887764 566665554
No 383
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.35 E-value=0.12 Score=47.32 Aligned_cols=83 Identities=16% Similarity=0.125 Sum_probs=50.5
Q ss_pred EecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeC-Cceeeeee--cCC
Q 040361 249 VSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSIN-GKHLASSE--SNG 325 (413)
Q Consensus 249 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~--~~~ 325 (413)
++.+....+....++.+.+.+-...+. +. ...++..+++||++++++.-..+|.+.+.+.+ .+.+.... ...
T Consensus 186 l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~--~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~ 260 (410)
T PF04841_consen 186 LSSDRVVEILLANGETIYIIDENSFKQ---ID--SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKS 260 (410)
T ss_pred eecCcceEEEEecCCEEEEEEcccccc---cc--CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCC
Confidence 444445555555555665443322211 21 23479999999999999999999999888776 33333322 235
Q ss_pred ceeEEEecCCC
Q 040361 326 RLNCLELSACG 336 (413)
Q Consensus 326 ~i~~~~~s~~~ 336 (413)
....+.|+-+.
T Consensus 261 ~p~~~~WCG~d 271 (410)
T PF04841_consen 261 PPKQMAWCGND 271 (410)
T ss_pred CCcEEEEECCC
Confidence 56677776543
No 384
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.34 E-value=0.059 Score=45.16 Aligned_cols=159 Identities=13% Similarity=0.182 Sum_probs=110.0
Q ss_pred ecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCc-
Q 040361 238 CGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGK- 316 (413)
Q Consensus 238 ~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~- 316 (413)
.+-...+.++.|+|+.+.|.+......-.++=..+|+.++++....-.....+.+..++++.++--.++.++++.+...
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 3455569999999999988888877777777667899999887543344567888888999999889999999888622
Q ss_pred eeee----------eec-CCceeEEEecCCCCEEEEeCCCCeEEEEECCCCc-e--EEEecCC-------CCcEEEEEEc
Q 040361 317 HLAS----------SES-NGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLE-V--VRRYSGV-------GKIITSLAVT 375 (413)
Q Consensus 317 ~~~~----------~~~-~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~-~--~~~~~~~-------~~~v~~~~~~ 375 (413)
.+.. ..+ +.....++|+|....|+.+-+..=+.||...... . +.....+ -..|.++.|.
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~ 241 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFN 241 (316)
T ss_pred cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceec
Confidence 1111 112 5567889999999999998887777777665322 1 1111111 1346778888
Q ss_pred cC-CeEEE-EcCCCeEEEEEecC
Q 040361 376 PE-ECFLA-GTKDGCLLVYSIEN 396 (413)
Q Consensus 376 ~~-~~~l~-~~~dg~i~vw~~~~ 396 (413)
+. +.+++ +.+++.+.-.+...
T Consensus 242 ~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 242 AITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred CCCCcEEEEecCCceEEEEecCC
Confidence 65 55555 66666666666544
No 385
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.28 E-value=0.22 Score=49.04 Aligned_cols=240 Identities=9% Similarity=0.017 Sum_probs=120.0
Q ss_pred CCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCe--------EEEEEECC----------------CCCEEEEccCCCcE
Q 040361 145 ENFLITCGNWENSFQVIALNDGRVVQSIRQHRDV--------VSCVAVTT----------------DGSILATGSYDTTV 200 (413)
Q Consensus 145 ~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~--------v~~~~~~~----------------~~~~l~s~s~dg~i 200 (413)
++.+.++. .++.|.-.|..+|+.+..+.-.... ...+++.. .+..++.++.|+.+
T Consensus 194 gg~lYv~t-~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L 272 (764)
T TIGR03074 194 GDTLYLCT-PHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL 272 (764)
T ss_pred CCEEEEEC-CCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence 44555543 3788999999999988777532210 12233321 24478888999999
Q ss_pred EEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEec--CCCEEEEeeC----------CCcEEEE
Q 040361 201 MVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSV--ELDIVISGSK----------DGTCVFH 268 (413)
Q Consensus 201 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~--~~~~l~s~~~----------dg~i~vw 268 (413)
.-.|.++++..+..-..-... . ...+......-..+.-.| .+..++.|+. +|.|+-+
T Consensus 273 iALDA~TGk~~W~fg~~G~vd--------l---~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~ 341 (764)
T TIGR03074 273 IALDADTGKLCEDFGNNGTVD--------L---TAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAF 341 (764)
T ss_pred EEEECCCCCEEEEecCCCcee--------e---ecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEE
Confidence 999999888332110000000 0 000000000000000011 1234555532 6889999
Q ss_pred EccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCC-eEEEEEeCCceeeee-ecCCceeEEEecCCCCEEEEeCCCC
Q 040361 269 TLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDL-SLHLFSINGKHLASS-ESNGRLNCLELSACGQFLVCGGDQG 346 (413)
Q Consensus 269 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg 346 (413)
|.++|+.+..+...... ... ..+.+.....++.+. ...-+|.+...+..- .... ..+....+........+
T Consensus 342 Da~TGkl~W~~~~g~p~-~~~--~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~----pd~~g~~r~~~~n~y~~ 414 (764)
T TIGR03074 342 DVNTGALVWAWDPGNPD-PTA--PPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQT----PDQWGGDRTPADEKYSS 414 (764)
T ss_pred ECCCCcEeeEEecCCCC-ccc--CCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCcc----ccccCCccccCcccccc
Confidence 99999999988642111 110 011333332222221 344455543333221 1111 00100111011112346
Q ss_pred eEEEEECCCCceEEEecC-CCC--------cEEEEEEcc-CC----eEEEEcCCCeEEEEEecCCcccccc
Q 040361 347 QIVVRSMNSLEVVRRYSG-VGK--------IITSLAVTP-EE----CFLAGTKDGCLLVYSIENRRTSLPR 403 (413)
Q Consensus 347 ~i~v~d~~~~~~~~~~~~-~~~--------~v~~~~~~~-~~----~~l~~~~dg~i~vw~~~~~~~~~~~ 403 (413)
.|.-.|.++|+....++. |.+ ...-+.+.. +| .++.++.+|.+++.|-++++...+.
T Consensus 415 slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 415 SLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred eEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 788889999988877653 211 111122322 55 3446999999999999999877653
No 386
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.26 E-value=0.18 Score=47.73 Aligned_cols=31 Identities=13% Similarity=0.204 Sum_probs=26.3
Q ss_pred CCCEEEEeCCCCeEEEEECCCCceEEEecCC
Q 040361 335 CGQFLVCGGDQGQIVVRSMNSLEVVRRYSGV 365 (413)
Q Consensus 335 ~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~ 365 (413)
.+.+++.++.+|.++.+|.++|+.+.+++..
T Consensus 471 ~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 471 AGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred CCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 5567788888999999999999999887643
No 387
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.19 E-value=0.002 Score=62.60 Aligned_cols=101 Identities=15% Similarity=0.259 Sum_probs=76.1
Q ss_pred cCCcEEEEECCCCeEEEEEeCCcee--e-eeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEE
Q 040361 294 RHGRIVLYGDDDLSLHLFSINGKHL--A-SSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIIT 370 (413)
Q Consensus 294 ~~~~~l~~~~~d~~i~i~d~~~~~~--~-~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~ 370 (413)
..+..++.|+..|.+-..|+.+..- . -....++|++++|+.+|..++.|-.+|.|.+||+..++.++.+..|..+.+
T Consensus 97 ~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 97 IVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence 3456788999999999999886422 1 134578999999999999999999999999999999999988876666555
Q ss_pred EEE---EccCC-eEEEEcCCCeEEEEEecC
Q 040361 371 SLA---VTPEE-CFLAGTKDGCLLVYSIEN 396 (413)
Q Consensus 371 ~~~---~~~~~-~~l~~~~dg~i~vw~~~~ 396 (413)
++- +..++ .++++...|. +|++.=
T Consensus 177 ~vi~v~~t~~nS~llt~D~~Gs--f~~lv~ 204 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGGS--FWKLVF 204 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCCc--eEEEEe
Confidence 443 33343 4666666665 676643
No 388
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.19 E-value=0.11 Score=43.64 Aligned_cols=229 Identities=13% Similarity=0.053 Sum_probs=132.3
Q ss_pred eEEEEecCCCCEEEEeecCCCeEEEEEcCCCc--EEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEecccccccc
Q 040361 136 CFTTMQTPSENFLITCGNWENSFQVIALNDGR--VVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEK 213 (413)
Q Consensus 136 ~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~ 213 (413)
++.++|.+.+.....-...+ .-+|..+-.- ..+.+.+-...+.++.|+|+.+.|++......-.++=..+++
T Consensus 45 ~f~~a~~k~~~~~~~~~~r~--~~~~l~~y~~~i~akpi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gd---- 118 (316)
T COG3204 45 VFPCAWFKAGQTNGLDLSRY--IARYLLEYRARIDAKPILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGD---- 118 (316)
T ss_pred eeeeEEEeccccccccccch--hhhccCCceEEEeccccccccccccceeeCCCcceEEEecCCCceEEEEecCCc----
Confidence 45555665555444333323 3334332111 112234545569999999999999988877776666555554
Q ss_pred ccccceeecCCCceeeecCceeee--ecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEE-----e----CC
Q 040361 214 RVRNMQIEAPRKDYVIVETPFHIL--CGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSL-----C----HP 282 (413)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-----~----~~ 282 (413)
.+.++ .+ -.....+.+..+++++++--+++.+.++.+.....+... . ..
T Consensus 119 -------------------lirtiPL~g-~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k 178 (316)
T COG3204 119 -------------------LIRTIPLTG-FSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNK 178 (316)
T ss_pred -------------------eEEEecccc-cCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCC
Confidence 22221 22 122345777778877777777888888776654322211 1 11
Q ss_pred CCCceeeEEEccCCcEEEEECCCCeEEEEEeCCce--eee--e-e-------cCCceeEEEecCC-CCEEEEeCCCCeEE
Q 040361 283 SGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKH--LAS--S-E-------SNGRLNCLELSAC-GQFLVCGGDQGQIV 349 (413)
Q Consensus 283 ~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~--~-~-------~~~~i~~~~~s~~-~~~l~~~~~dg~i~ 349 (413)
.+.....++|+|....+.++-...-+.+|.+++.. +.. . . .-..+.++.|.+. +.+|+.+.+++.+.
T Consensus 179 ~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~ 258 (316)
T COG3204 179 KNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLL 258 (316)
T ss_pred CCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEE
Confidence 14567889999998888888777777777776322 111 0 0 1124667778764 56777788888887
Q ss_pred EEECCCCceEEEecCCC---------CcEEEEEEccCCeEEEEcCCCeEEE
Q 040361 350 VRSMNSLEVVRRYSGVG---------KIITSLAVTPEECFLAGTKDGCLLV 391 (413)
Q Consensus 350 v~d~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~~~~dg~i~v 391 (413)
-.|.. |+.+..+.-+. ...-.++..++|.+...|+-+-.+.
T Consensus 259 Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSEPnlfy~ 308 (316)
T COG3204 259 EVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSEPNLFYR 308 (316)
T ss_pred EEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEecCCccee
Confidence 77765 34444332111 1234566666665555555444433
No 389
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.16 E-value=0.11 Score=43.34 Aligned_cols=153 Identities=12% Similarity=0.039 Sum_probs=99.1
Q ss_pred eEEEEEecCCCEEEEeeCCC--cEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCC-ceeee
Q 040361 244 ITCLYVSVELDIVISGSKDG--TCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSING-KHLAS 320 (413)
Q Consensus 244 i~~~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~ 320 (413)
-..+.|..++.++-+.+.-| .|+.+|+.+++.......+...---.++.. ++++....-.++...+||.+. +.+..
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~~ 125 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIGT 125 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEEEE
Confidence 34677877888888888776 799999999998887776544333344444 345666677889999999984 44444
Q ss_pred eecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCC-----CCcEEEEEEccCCeEEE-EcCCCeEEEEEe
Q 040361 321 SESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGV-----GKIITSLAVTPEECFLA-GTKDGCLLVYSI 394 (413)
Q Consensus 321 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~-~~~dg~i~vw~~ 394 (413)
....+.=..++ .+++.|+.++....++++|..+.+...++... -..++.+.|. +|.+.| .-....|..-|.
T Consensus 126 ~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp 202 (264)
T PF05096_consen 126 FPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDP 202 (264)
T ss_dssp EE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEET
T ss_pred EecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeC
Confidence 55555555665 57888888888889999999988877766532 2346667776 676666 445566666777
Q ss_pred cCCccc
Q 040361 395 ENRRTS 400 (413)
Q Consensus 395 ~~~~~~ 400 (413)
.+|+..
T Consensus 203 ~tG~V~ 208 (264)
T PF05096_consen 203 ETGKVV 208 (264)
T ss_dssp TT-BEE
T ss_pred CCCeEE
Confidence 776543
No 390
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.12 E-value=0.0021 Score=37.76 Aligned_cols=35 Identities=14% Similarity=0.436 Sum_probs=30.1
Q ss_pred cCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCce
Q 040361 323 SNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEV 358 (413)
Q Consensus 323 ~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~ 358 (413)
....|.+++|+|..+++|.|+.+|.|.+|.+ +++.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 4567899999999999999999999999998 5544
No 391
>PHA02713 hypothetical protein; Provisional
Probab=97.04 E-value=0.043 Score=52.39 Aligned_cols=100 Identities=9% Similarity=-0.026 Sum_probs=52.4
Q ss_pred cEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCC------CeEEEEEeCC-ceeeee---ecC-CceeEEEe
Q 040361 264 TCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDD------LSLHLFSING-KHLASS---ESN-GRLNCLEL 332 (413)
Q Consensus 264 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~i~d~~~-~~~~~~---~~~-~~i~~~~~ 332 (413)
.+..||..+.+-...-..+.. ....-+..-++++.+.|+.+ ..+..||.+. ..-... ... .....+++
T Consensus 433 ~ve~YDP~td~W~~v~~m~~~-r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~ 511 (557)
T PHA02713 433 KVIRYDTVNNIWETLPNFWTG-TIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH 511 (557)
T ss_pred eEEEECCCCCeEeecCCCCcc-cccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE
Confidence 466788776654322111111 11111223356777777654 2467888876 333221 111 11222222
Q ss_pred cCCCCEEEEeCCCC--eEEEEECCCCceEEEecCCC
Q 040361 333 SACGQFLVCGGDQG--QIVVRSMNSLEVVRRYSGVG 366 (413)
Q Consensus 333 s~~~~~l~~~~~dg--~i~v~d~~~~~~~~~~~~~~ 366 (413)
+|+..++|+.+| .+..||..+.+-......|+
T Consensus 512 --~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~~ 545 (557)
T PHA02713 512 --DNTIMMLHCYESYMLQDTFNVYTYEWNHICHQHS 545 (557)
T ss_pred --CCEEEEEeeecceeehhhcCcccccccchhhhcC
Confidence 788889998888 67778877765443333444
No 392
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.92 E-value=0.33 Score=46.41 Aligned_cols=183 Identities=14% Similarity=0.166 Sum_probs=94.1
Q ss_pred CCCEEEEeecCC------CeEEEEEcCCCcEEE--EeecCCCeEEEEEECCCCCEEEEccCCCc-----EEEEEeccccc
Q 040361 144 SENFLITCGNWE------NSFQVIALNDGRVVQ--SIRQHRDVVSCVAVTTDGSILATGSYDTT-----VMVWEVIRARA 210 (413)
Q Consensus 144 ~~~~l~~~g~~d------~~i~i~~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~l~s~s~dg~-----i~iw~~~~~~~ 210 (413)
++. +.++|+.| .++..||..+++-.. .+...........+ +|...++|+.||. +-.||..+.+.
T Consensus 332 ~~~-lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W 408 (571)
T KOG4441|consen 332 NGK-LYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKW 408 (571)
T ss_pred CCE-EEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCcc
Confidence 444 44445556 367788887666433 22212222222222 6788899998865 66677666542
Q ss_pred cccccccceeecCCCceeeecCceeeeecCCCCeEEEE-EecCCCEEEEeeCCC------cEEEEEccCCeEEEEEeCCC
Q 040361 211 PEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLY-VSVELDIVISGSKDG------TCVFHTLREGRYVRSLCHPS 283 (413)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~-~~~~~~~l~s~~~dg------~i~vwd~~~~~~~~~~~~~~ 283 (413)
.. +.. ......... ..-++.+.++|+.++ .+..||..+..-...-....
T Consensus 409 ~~---------------------va~---m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~ 464 (571)
T KOG4441|consen 409 TP---------------------VAP---MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNT 464 (571)
T ss_pred cc---------------------cCC---CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccc
Confidence 11 111 111111111 223677788888665 46677876665433222111
Q ss_pred CCceeeEEEccCCcEEEEECCCC-----eEEEEEeCCceeeeee-c---CCceeEEEecCCCCEEEEeCCCC-----eEE
Q 040361 284 GSALSKLAASRHGRIVLYGDDDL-----SLHLFSINGKHLASSE-S---NGRLNCLELSACGQFLVCGGDQG-----QIV 349 (413)
Q Consensus 284 ~~~v~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~-~---~~~i~~~~~s~~~~~l~~~~~dg-----~i~ 349 (413)
...-.. +..-++.+.++|+.|+ ++..||.....-.... . ...+..+.+ +++..++|+.|| +|.
T Consensus 465 ~R~~~g-~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve 541 (571)
T KOG4441|consen 465 RRSGFG-VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVE 541 (571)
T ss_pred ccccce-EEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEecccCccccceeE
Confidence 111111 2233677888888776 3777888765544322 1 112222222 677778888776 456
Q ss_pred EEECCCC
Q 040361 350 VRSMNSL 356 (413)
Q Consensus 350 v~d~~~~ 356 (413)
.||..+.
T Consensus 542 ~ydp~~d 548 (571)
T KOG4441|consen 542 CYDPETD 548 (571)
T ss_pred EcCCCCC
Confidence 6665543
No 393
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.91 E-value=0.037 Score=54.28 Aligned_cols=98 Identities=21% Similarity=0.359 Sum_probs=68.0
Q ss_pred EEEeecCCCeEEEEEcCCC-cEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCc
Q 040361 148 LITCGNWENSFQVIALNDG-RVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKD 226 (413)
Q Consensus 148 l~~~g~~d~~i~i~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 226 (413)
+++.|+..|.+-..|+... .....=+.-.++|++++|+.+|..++.|-.+|.|.+||+.+++
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k----------------- 163 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAK----------------- 163 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCc-----------------
Confidence 3444655777777776432 1111112245799999999999999999999999999999877
Q ss_pred eeeecCceeeeecCCCCeEEEE---EecCCCEEEEeeCCCcEEEEEc
Q 040361 227 YVIVETPFHILCGHDDIITCLY---VSVELDIVISGSKDGTCVFHTL 270 (413)
Q Consensus 227 ~~~~~~~~~~~~~h~~~i~~~~---~~~~~~~l~s~~~dg~i~vwd~ 270 (413)
..+.+..|..+.+.+- +..++..++++...|. +|.+
T Consensus 164 ------~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 164 ------ILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ------ceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 5666766666655544 3445567888887776 5654
No 394
>PRK10115 protease 2; Provisional
Probab=96.86 E-value=0.54 Score=46.26 Aligned_cols=236 Identities=11% Similarity=0.064 Sum_probs=118.4
Q ss_pred eEEEEecCCCCEEEEeecCCC----eEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCC------CcEEEEEe
Q 040361 136 CFTTMQTPSENFLITCGNWEN----SFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYD------TTVMVWEV 205 (413)
Q Consensus 136 ~~~~~~~~~~~~l~~~g~~d~----~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d------g~i~iw~~ 205 (413)
+..+.++|++++++.+-+.+| .|++.|+.+|+.+...-.... ..++|.+|++.|+....+ ..|..+++
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~l 206 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTI 206 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEEC
Confidence 345677999999888766555 688999988864322211212 458999998877665442 34666666
Q ss_pred ccccccccccccceeecCCCceeeecCceeeeecCCCCeE-EEEEecCCCEEEEeeC---CCcEEEEEcc--CCeEEEEE
Q 040361 206 IRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIIT-CLYVSVELDIVISGSK---DGTCVFHTLR--EGRYVRSL 279 (413)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~-~~~~~~~~~~l~s~~~---dg~i~vwd~~--~~~~~~~~ 279 (413)
.++... -...+........ ....+.++++++..+. ++.+.+++.. .+.....+
T Consensus 207 gt~~~~---------------------d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~ 265 (686)
T PRK10115 207 GTPASQ---------------------DELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFL 265 (686)
T ss_pred CCChhH---------------------CeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEE
Confidence 655311 1122332222233 2233447776554333 4578888843 34332223
Q ss_pred eCCCCCceeeEEEccCCcEEEEECC---CCeEEEEEeCC-ce-eeeeec--CCceeEEEecCCCCEEEEeCCCCeEEE--
Q 040361 280 CHPSGSALSKLAASRHGRIVLYGDD---DLSLHLFSING-KH-LASSES--NGRLNCLELSACGQFLVCGGDQGQIVV-- 350 (413)
Q Consensus 280 ~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~i~d~~~-~~-~~~~~~--~~~i~~~~~s~~~~~l~~~~~dg~i~v-- 350 (413)
....+ ....+. ...+.+++.... ...|...++.. .. .....+ ...+..+.++ .+.++++...+|.-++
T Consensus 266 ~~~~~-~~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~ 342 (686)
T PRK10115 266 PRRKD-HEYSLD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQ 342 (686)
T ss_pred ECCCC-CEEEEE-eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEE
Confidence 32222 222222 222333333322 22344444442 11 112222 3467777776 3345556666776555
Q ss_pred EECCCCceEEEec-CCCCcEEEEEEc--cC-CeEE-E-Ec--CCCeEEEEEecCCc
Q 040361 351 RSMNSLEVVRRYS-GVGKIITSLAVT--PE-ECFL-A-GT--KDGCLLVYSIENRR 398 (413)
Q Consensus 351 ~d~~~~~~~~~~~-~~~~~v~~~~~~--~~-~~~l-~-~~--~dg~i~vw~~~~~~ 398 (413)
++... ..+..+. .....+..+.++ ++ +.++ + .+ .-+.++.+|+.+++
T Consensus 343 ~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 343 INRKT-REVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EcCCC-CceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 45433 3344443 222233334444 33 3333 3 22 45778888887754
No 395
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.78 E-value=0.0043 Score=36.48 Aligned_cols=35 Identities=17% Similarity=0.422 Sum_probs=30.4
Q ss_pred CCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEE
Q 040361 241 DDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYV 276 (413)
Q Consensus 241 ~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 276 (413)
...|.+++|+|...++|.++.+|.|.++.+ +++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence 456899999999999999999999999998 55543
No 396
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.72 E-value=0.41 Score=42.95 Aligned_cols=190 Identities=11% Similarity=0.069 Sum_probs=89.8
Q ss_pred CCCEEEEeecCCCeEEEEEcCC----CcEEEEeec---CC----CeEEEEEECCCCCEEEEccC------CCcEEEEEec
Q 040361 144 SENFLITCGNWENSFQVIALND----GRVVQSIRQ---HR----DVVSCVAVTTDGSILATGSY------DTTVMVWEVI 206 (413)
Q Consensus 144 ~~~~l~~~g~~d~~i~i~~~~~----~~~~~~~~~---h~----~~v~~~~~~~~~~~l~s~s~------dg~i~iw~~~ 206 (413)
..++|++-|-.++.|+|+|+.+ .+..+.++. +. ..-..+-.-|+|+.++|+-. -|-+.+.|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 4677888787889999999873 345555542 11 12223334478888887532 2346666655
Q ss_pred cccccccccccceeecCCCceeeecCceeeeec---CCCCeEEEEEecCCCEEEEee--------------------CCC
Q 040361 207 RARAPEKRVRNMQIEAPRKDYVIVETPFHILCG---HDDIITCLYVSVELDIVISGS--------------------KDG 263 (413)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---h~~~i~~~~~~~~~~~l~s~~--------------------~dg 263 (413)
+.+ ....... ...--..+.|.|..+.++|.. ...
T Consensus 166 tf~-----------------------v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~ 222 (461)
T PF05694_consen 166 TFE-----------------------VKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGH 222 (461)
T ss_dssp T-------------------------EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--
T ss_pred ccc-----------------------ccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccC
Confidence 433 1111111 112234566677767777653 235
Q ss_pred cEEEEEccCCeEEEEEeCCCCC-ceeeEEEccC--CcEEEEE-CCCCeEEEEEe-C-C----ceeeeee-----------
Q 040361 264 TCVFHTLREGRYVRSLCHPSGS-ALSKLAASRH--GRIVLYG-DDDLSLHLFSI-N-G----KHLASSE----------- 322 (413)
Q Consensus 264 ~i~vwd~~~~~~~~~~~~~~~~-~v~~~~~~~~--~~~l~~~-~~d~~i~i~d~-~-~----~~~~~~~----------- 322 (413)
++.+||+.+.+.++++...... .+..+.|..+ ..+-+++ .-..+|..|-- + + +++....
T Consensus 223 ~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ 302 (461)
T PF05694_consen 223 SLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPE 302 (461)
T ss_dssp EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---G
T ss_pred eEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccc
Confidence 8999999999999999875432 3455666543 3333322 22334444433 2 2 1121111
Q ss_pred -------cCCceeEEEecCCCCEEEEeC-CCCeEEEEECCCC
Q 040361 323 -------SNGRLNCLELSACGQFLVCGG-DQGQIVVRSMNSL 356 (413)
Q Consensus 323 -------~~~~i~~~~~s~~~~~l~~~~-~dg~i~v~d~~~~ 356 (413)
...-++.+.+|.|.++|.++. ..|.|+.||+.+.
T Consensus 303 ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 303 MLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp GGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred cccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence 024578999999999988765 5899999999863
No 397
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.70 E-value=0.0043 Score=49.55 Aligned_cols=104 Identities=15% Similarity=0.127 Sum_probs=60.9
Q ss_pred ceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCE--EEEeecCCCeEEEEEcCCCcEEEEeecCC
Q 040361 99 NFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENF--LITCGNWENSFQVIALNDGRVVQSIRQHR 176 (413)
Q Consensus 99 ~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~g~~d~~i~i~~~~~~~~~~~~~~h~ 176 (413)
..++.|+.++.+.+|. |+. ..............+.+. .|.++. +..++..||.|+.|++.-++.+...-.|.
T Consensus 71 ~~~~vG~~dg~v~~~n--~n~--~g~~~d~~~s~~e~i~~~--Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~ 144 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFN--WNL--EGAHSDRVCSGEESIDLG--IPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHN 144 (238)
T ss_pred ceEEeecccceEEEec--CCc--cchHHHhhhcccccceec--cccccccceeEEeccCCceeeeccccCceeeeecccc
Confidence 4567777788877753 331 111111111112222222 344443 77778889999999999998888777777
Q ss_pred -CeEEEEEECCCCCEEEEc--cCCCcEEEEEeccc
Q 040361 177 -DVVSCVAVTTDGSILATG--SYDTTVMVWEVIRA 208 (413)
Q Consensus 177 -~~v~~~~~~~~~~~l~s~--s~dg~i~iw~~~~~ 208 (413)
..+.....+..++.++.+ |.|..++.|++..-
T Consensus 145 ~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 145 FESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred CCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 444444444455556555 66666666666443
No 398
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=96.66 E-value=0.072 Score=48.04 Aligned_cols=148 Identities=14% Similarity=0.130 Sum_probs=92.5
Q ss_pred cCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCC-------CEEEEccCCCcEEEEEeccccccccc
Q 040361 142 TPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDG-------SILATGSYDTTVMVWEVIRARAPEKR 214 (413)
Q Consensus 142 ~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~-------~~l~s~s~dg~i~iw~~~~~~~~~~~ 214 (413)
..+.+.++..|.....++-.|++.|+++..+..|.+. -+.|.|+. ..-+.|-.+..|.-.|.+-.....
T Consensus 476 ~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi-- 551 (776)
T COG5167 476 DNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKI-- 551 (776)
T ss_pred cCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCce--
Confidence 4455666666776778888999999999999888776 56787742 123344455555444443222100
Q ss_pred cccceeecCCCceeeecCceeeee--cCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEE
Q 040361 215 VRNMQIEAPRKDYVIVETPFHILC--GHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAA 292 (413)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~ 292 (413)
.+...+ .......+..- ....+++.|+..|-|++||- -|....+....-+..|..+..
T Consensus 552 ------------------~v~esKdY~tKn~Fss~~t-TesGyIa~as~kGDirLyDR-ig~rAKtalP~lG~aIk~idv 611 (776)
T COG5167 552 ------------------KVVESKDYKTKNKFSSGMT-TESGYIAAASRKGDIRLYDR-IGKRAKTALPGLGDAIKHIDV 611 (776)
T ss_pred ------------------eeeeehhcccccccccccc-ccCceEEEecCCCceeeehh-hcchhhhcCcccccceeeeEe
Confidence 000011 11122233322 23458999999999999995 333333333334668899999
Q ss_pred ccCCcEEEEECCCCeEEEEEeC
Q 040361 293 SRHGRIVLYGDDDLSLHLFSIN 314 (413)
Q Consensus 293 ~~~~~~l~~~~~d~~i~i~d~~ 314 (413)
+.+|+++++.+.. .+.+-|++
T Consensus 612 ta~Gk~ilaTCk~-yllL~d~~ 632 (776)
T COG5167 612 TANGKHILATCKN-YLLLTDVP 632 (776)
T ss_pred ecCCcEEEEeecc-eEEEEecc
Confidence 9999999888864 67777775
No 399
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.54 E-value=0.41 Score=40.58 Aligned_cols=146 Identities=16% Similarity=0.051 Sum_probs=88.6
Q ss_pred eEEEEEECCCCCEEEEcc-CCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEE
Q 040361 178 VVSCVAVTTDGSILATGS-YDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIV 256 (413)
Q Consensus 178 ~v~~~~~~~~~~~l~s~s-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l 256 (413)
.+...+++++++.++... .++.-.+|-...+. ....+. -...+....|++++...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~-----------------------~~~~~~-~g~~l~~PS~d~~g~~W 80 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG-----------------------PVRPVL-TGGSLTRPSWDPDGWVW 80 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCC-----------------------cceeec-cCCccccccccCCCCEE
Confidence 688899999998877655 23333444443333 111111 22367788899997776
Q ss_pred EEeeCCCcEEEEE-ccCCeEE-EEEeCCCCC-ceeeEEEccCCcEEEEEC---CCCeEEEEEeC----C-ceee-----e
Q 040361 257 ISGSKDGTCVFHT-LREGRYV-RSLCHPSGS-ALSKLAASRHGRIVLYGD---DDLSLHLFSIN----G-KHLA-----S 320 (413)
Q Consensus 257 ~s~~~dg~i~vwd-~~~~~~~-~~~~~~~~~-~v~~~~~~~~~~~l~~~~---~d~~i~i~d~~----~-~~~~-----~ 320 (413)
+....+....++. ..++... ......... .|..+.++|||..++... .++.|.+--+. + .... .
T Consensus 81 ~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~ 160 (253)
T PF10647_consen 81 TVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRV 160 (253)
T ss_pred EEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEe
Confidence 6666666666663 3333322 222222222 799999999999877655 35677776553 3 1111 1
Q ss_pred -eecCCceeEEEecCCCCEEEEeCCCCe
Q 040361 321 -SESNGRLNCLELSACGQFLVCGGDQGQ 347 (413)
Q Consensus 321 -~~~~~~i~~~~~s~~~~~l~~~~~dg~ 347 (413)
......+..++|.+++.+++.+...+.
T Consensus 161 ~~~~~~~v~~v~W~~~~~L~V~~~~~~~ 188 (253)
T PF10647_consen 161 APPLLSDVTDVAWSDDSTLVVLGRSAGG 188 (253)
T ss_pred cccccCcceeeeecCCCEEEEEeCCCCC
Confidence 123467899999999998887765443
No 400
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=96.52 E-value=0.055 Score=48.78 Aligned_cols=138 Identities=15% Similarity=0.180 Sum_probs=94.6
Q ss_pred EEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCc-------EEEEECCCCeEEEEEeC--CceeeeeecCCc
Q 040361 256 VISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGR-------IVLYGDDDLSLHLFSIN--GKHLASSESNGR 326 (413)
Q Consensus 256 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~ 326 (413)
+..|+....++-.|++.|+.+.....+.. + -+.+.|+.+ .-++|-.+..|.-.|.+ |.++........
T Consensus 483 ~~dg~~~~kLykmDIErGkvveeW~~~dd--v-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY 559 (776)
T COG5167 483 YLDGGERDKLYKMDIERGKVVEEWDLKDD--V-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDY 559 (776)
T ss_pred EecCCCcccceeeecccceeeeEeecCCc--c-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhc
Confidence 34566667788889999999988887643 3 466777432 23455556677777776 555554333333
Q ss_pred eeEEEec----CCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEccCCeEEEEcCCCeEEEEEecC
Q 040361 327 LNCLELS----ACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFLAGTKDGCLLVYSIEN 396 (413)
Q Consensus 327 i~~~~~s----~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~dg~i~vw~~~~ 396 (413)
.+--.|+ ....|+|+|+..|.|++||.-.-+.-..+++....|..+..+.+|.++.+.-...|.+-|+.-
T Consensus 560 ~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~i 633 (776)
T COG5167 560 KTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVPI 633 (776)
T ss_pred cccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEeccc
Confidence 3333333 245699999999999999976555555677778899999999999877655566788877753
No 401
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.48 E-value=0.27 Score=44.41 Aligned_cols=148 Identities=11% Similarity=0.137 Sum_probs=80.3
Q ss_pred CeEEEEEECCCCCEEEEcc-----------CCC-cEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCe
Q 040361 177 DVVSCVAVTTDGSILATGS-----------YDT-TVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDII 244 (413)
Q Consensus 177 ~~v~~~~~~~~~~~l~s~s-----------~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i 244 (413)
.....|+|.++|+++++-. ..+ .|.+++-.++.... .....+.......
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~-------------------d~~~vfa~~l~~p 74 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKY-------------------DKSNVFAEELSMV 74 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCc-------------------ceeEEeecCCCCc
Confidence 3456788999888777643 122 56666543322100 0122233333345
Q ss_pred EEEEEecCCCEEEEeeCCCcEEEEEccCC-----e--EEE-EEeCC---CCCceeeEEEccCCcEEEEECC---------
Q 040361 245 TCLYVSVELDIVISGSKDGTCVFHTLREG-----R--YVR-SLCHP---SGSALSKLAASRHGRIVLYGDD--------- 304 (413)
Q Consensus 245 ~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-----~--~~~-~~~~~---~~~~v~~~~~~~~~~~l~~~~~--------- 304 (413)
..+++.+++ ++++ +.....++.|.... + .+. .+... .......+++.|+|.+.++-+.
T Consensus 75 ~Gi~~~~~G-lyV~-~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~ 152 (367)
T TIGR02604 75 TGLAVAVGG-VYVA-TPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRP 152 (367)
T ss_pred cceeEecCC-EEEe-CCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccC
Confidence 788888888 4444 44433334344211 1 111 12211 1134778999999987665442
Q ss_pred ----------CCeEEEEEeCCceeeeeec-CCceeEEEecCCCCEEEEeCCC
Q 040361 305 ----------DLSLHLFSINGKHLASSES-NGRLNCLELSACGQFLVCGGDQ 345 (413)
Q Consensus 305 ----------d~~i~i~d~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~~d 345 (413)
.+.|..++..+..+..... -.....++|+|+|+++++-..+
T Consensus 153 ~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 153 GTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred CCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEccCC
Confidence 1456667776655544332 2345789999999987765433
No 402
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.47 E-value=0.19 Score=47.75 Aligned_cols=107 Identities=15% Similarity=0.186 Sum_probs=74.9
Q ss_pred eeeEEEccCCcEEEEECCCCeEEEEEeCCceeee---eecCCceeEEEec--CCCCEEEEeCCCCeEEEEECC-------
Q 040361 287 LSKLAASRHGRIVLYGDDDLSLHLFSINGKHLAS---SESNGRLNCLELS--ACGQFLVCGGDQGQIVVRSMN------- 354 (413)
Q Consensus 287 v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~---~~~~~~i~~~~~s--~~~~~l~~~~~dg~i~v~d~~------- 354 (413)
+.-+.-+.-++..++.+....+.|||.++..+.. ....+.|..+.|. |+|+.+++.+..+.|.+|.-.
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~ 111 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNK 111 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcC
Confidence 4445555566666666667799999999666544 2447889999886 678888888888899998542
Q ss_pred --CCceEEEe--cCCC-CcEEEEEEccCCeEEEEcCCCeEEEEEe
Q 040361 355 --SLEVVRRY--SGVG-KIITSLAVTPEECFLAGTKDGCLLVYSI 394 (413)
Q Consensus 355 --~~~~~~~~--~~~~-~~v~~~~~~~~~~~l~~~~dg~i~vw~~ 394 (413)
+...++++ ..++ .+|.+..|.++|.+++|+. +.+.|++-
T Consensus 112 ~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG-Nqlfv~dk 155 (631)
T PF12234_consen 112 GPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG-NQLFVFDK 155 (631)
T ss_pred CcccceeEEEEeecCCCCCccceeEecCCeEEEEeC-CEEEEECC
Confidence 12334333 2343 5799999999998887654 45777764
No 403
>PHA03098 kelch-like protein; Provisional
Probab=96.42 E-value=0.32 Score=46.54 Aligned_cols=103 Identities=15% Similarity=0.132 Sum_probs=53.0
Q ss_pred CCCEEEEeeCC------CcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCC--------CeEEEEEeCCce
Q 040361 252 ELDIVISGSKD------GTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDD--------LSLHLFSINGKH 317 (413)
Q Consensus 252 ~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------~~i~i~d~~~~~ 317 (413)
++++.+.|+.+ ..+..||..+.+-...-..+.. .....+...++.+++.|+.+ ..+.+||+....
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~ 467 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPIS-HYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNK 467 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCcc-ccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCc
Confidence 55667777632 3578888876654322111111 11112233356677777643 237888887543
Q ss_pred eeeee---cC-CceeEEEecCCCCEEEEeCCC-----CeEEEEECCCCc
Q 040361 318 LASSE---SN-GRLNCLELSACGQFLVCGGDQ-----GQIVVRSMNSLE 357 (413)
Q Consensus 318 ~~~~~---~~-~~i~~~~~s~~~~~l~~~~~d-----g~i~v~d~~~~~ 357 (413)
-.... .. .....+.+ +++.++.|+.+ +.+.+||..+.+
T Consensus 468 W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 468 WTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred eeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 32211 11 11112222 67777777654 467888877643
No 404
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.33 E-value=0.62 Score=40.36 Aligned_cols=112 Identities=21% Similarity=0.214 Sum_probs=64.7
Q ss_pred CCceeeEEEccCCcEEEEECCCCeEEEEEeCC--ceeeeeecCCceeEEEecCCCCEEEEeCCCCeEEEEEC-CCCceEE
Q 040361 284 GSALSKLAASRHGRIVLYGDDDLSLHLFSING--KHLASSESNGRLNCLELSACGQFLVCGGDQGQIVVRSM-NSLEVVR 360 (413)
Q Consensus 284 ~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~-~~~~~~~ 360 (413)
...+..+..+++|.+++++.....+.-||.-. -..........+..|.|.|++.+.+++ ..|.|+.=+. ...+...
T Consensus 144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~ 222 (302)
T PF14870_consen 144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWS 222 (302)
T ss_dssp ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE-
T ss_pred cceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccc
Confidence 45688888999999999998777777787653 233334466889999999998877765 7888888772 2222221
Q ss_pred E----ecCCCCcEEEEEEccCCeEEEEcCCCeEEEEEecCC
Q 040361 361 R----YSGVGKIITSLAVTPEECFLAGTKDGCLLVYSIENR 397 (413)
Q Consensus 361 ~----~~~~~~~v~~~~~~~~~~~l~~~~dg~i~vw~~~~~ 397 (413)
. +....-.+..++|.+++.+.+++..|.+.+ ..+.+
T Consensus 223 ~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~-S~DgG 262 (302)
T PF14870_consen 223 EPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLV-STDGG 262 (302)
T ss_dssp --B-TTSS--S-EEEEEESSSS-EEEEESTT-EEE-ESSTT
T ss_pred cccCCcccCceeeEEEEecCCCCEEEEeCCccEEE-eCCCC
Confidence 1 112233489999999987777666676543 33433
No 405
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.33 E-value=0.56 Score=39.86 Aligned_cols=221 Identities=14% Similarity=0.090 Sum_probs=125.5
Q ss_pred EEEEecCCCCEEEEeecCCCeEEEEEcC------CC-cEEEEeec-----CCCeEEEEEECCCCC------------EEE
Q 040361 137 FTTMQTPSENFLITCGNWENSFQVIALN------DG-RVVQSIRQ-----HRDVVSCVAVTTDGS------------ILA 192 (413)
Q Consensus 137 ~~~~~~~~~~~l~~~g~~d~~i~i~~~~------~~-~~~~~~~~-----h~~~v~~~~~~~~~~------------~l~ 192 (413)
.-++++|.+...++... .+...+||.+ .. .++-.+.. -....+.+.|+.... .++
T Consensus 26 WGia~~p~~~~WVadng-T~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 26 WGLSYRPGGPFWVANTG-TGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred ceeEecCCCCEEEecCC-cceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 45677888887777554 7789999986 12 22334332 234577777765322 367
Q ss_pred EccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeee-cCCCCe-EEEEEec--CCCEEEEe-eCCCcEEE
Q 040361 193 TGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILC-GHDDII-TCLYVSV--ELDIVISG-SKDGTCVF 267 (413)
Q Consensus 193 s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~i-~~~~~~~--~~~~l~s~-~~dg~i~v 267 (413)
.+++||+|.-|...-..... . .....+. ...+.| ..+++-. .+.+|..+ -..++|.+
T Consensus 105 f~tEdGTisaW~p~v~~t~~--~----------------~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDV 166 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRM--T----------------RAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDV 166 (336)
T ss_pred EEeCCceEEeecCcCCcccc--c----------------ccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEE
Confidence 77899999999853322000 0 0011111 111222 3444443 24444443 45788988
Q ss_pred EEccCCeEE--EEEeCC---CCCc---e---------eeEEEccCCcEEEEECCCCeEEEEEeCCceeeeeecCC---ce
Q 040361 268 HTLREGRYV--RSLCHP---SGSA---L---------SKLAASRHGRIVLYGDDDLSLHLFSINGKHLASSESNG---RL 327 (413)
Q Consensus 268 wd~~~~~~~--~~~~~~---~~~~---v---------~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~---~i 327 (413)
+|-.=.+.. ..+..+ .+.. | +-..-.++++.=+.+...|.|-+||+.+..+......+ ..
T Consensus 167 Fd~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaP 246 (336)
T TIGR03118 167 FKGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAP 246 (336)
T ss_pred ecCccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccCCcccCC
Confidence 885322111 011111 0101 1 11111222222233444579999999998888765544 34
Q ss_pred eEEEecC------CCCEEEEeCCCCeEEEEECCCCceEEEecCCC------CcEEEEEEcc
Q 040361 328 NCLELSA------CGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVG------KIITSLAVTP 376 (413)
Q Consensus 328 ~~~~~s~------~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~------~~v~~~~~~~ 376 (413)
+.|+..| .|.+|+---.||+|..||..+++.+..+.... ..++.+.|..
T Consensus 247 WG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 247 WGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred ceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 6677766 36677777789999999999999888887543 3467788875
No 406
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.27 E-value=0.97 Score=42.03 Aligned_cols=142 Identities=13% Similarity=0.060 Sum_probs=86.7
Q ss_pred cCCCCeEEEEEecCC----CEEEEeeCCCcEEEEEcc-----CCeEEEEEeCC----CCCceeeEEEccCCcEEEEECCC
Q 040361 239 GHDDIITCLYVSVEL----DIVISGSKDGTCVFHTLR-----EGRYVRSLCHP----SGSALSKLAASRHGRIVLYGDDD 305 (413)
Q Consensus 239 ~h~~~i~~~~~~~~~----~~l~s~~~dg~i~vwd~~-----~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d 305 (413)
|.-..|..+.|.|-+ -.+++......|.+|.+. +.+.+.+...+ ...-.....|+|....|++-...
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~ 133 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTAR 133 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecC
Confidence 344568889998853 356666778899999875 23333222211 11123567899999888887766
Q ss_pred CeEEEEEeC--Cceeee-eecCCceeEEEecCCCCEEEEeCCC-CeEEEEECCCCceE-----EEecCCCCcEEEEEEcc
Q 040361 306 LSLHLFSIN--GKHLAS-SESNGRLNCLELSACGQFLVCGGDQ-GQIVVRSMNSLEVV-----RRYSGVGKIITSLAVTP 376 (413)
Q Consensus 306 ~~i~i~d~~--~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~d-g~i~v~d~~~~~~~-----~~~~~~~~~v~~~~~~~ 376 (413)
..-.+++++ +..++. ....+.|.|.+|.+||+.|+++-.. =.-++||-...... ..| .-.+.|.++.-.-
T Consensus 134 dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qKtL~~CsfcPVF-dv~~~Icsi~AT~ 212 (671)
T PF15390_consen 134 DVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQKTLHRCSFCPVF-DVGGYICSIEATV 212 (671)
T ss_pred ceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchhhhhhCCcceee-cCCCceEEEEEec
Confidence 555677776 333332 5677899999999999887766433 34678885432111 111 1234566665555
Q ss_pred CCeEE
Q 040361 377 EECFL 381 (413)
Q Consensus 377 ~~~~l 381 (413)
|.+++
T Consensus 213 dsqVA 217 (671)
T PF15390_consen 213 DSQVA 217 (671)
T ss_pred cceEE
Confidence 54444
No 407
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.23 E-value=0.59 Score=39.19 Aligned_cols=205 Identities=16% Similarity=0.165 Sum_probs=105.4
Q ss_pred EecCCCCEEEEeec----CCCeEEEEEcCCC-cEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEE-Eecccccccc
Q 040361 140 MQTPSENFLITCGN----WENSFQVIALNDG-RVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVW-EVIRARAPEK 213 (413)
Q Consensus 140 ~~~~~~~~l~~~g~----~d~~i~i~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw-~~~~~~~~~~ 213 (413)
+|+|+|.+|.++-. .-|.|-|||...+ +.+.++..|.-.-..+.|.+||+.++.+. |-|..- |....+....
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNld 197 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNLD 197 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC--CceecccccCccccchh
Confidence 57899998887532 1368999998643 45667777877778899999999998764 444444 2211110000
Q ss_pred cccc--ceeecCCCceeeecCceeeee--cCCCCeEEEEEecCCCEEEEeeCCCc-----EEEEEccCCeEEEEEeCCC-
Q 040361 214 RVRN--MQIEAPRKDYVIVETPFHILC--GHDDIITCLYVSVELDIVISGSKDGT-----CVFHTLREGRYVRSLCHPS- 283 (413)
Q Consensus 214 ~~~~--~~~~~~~~~~~~~~~~~~~~~--~h~~~i~~~~~~~~~~~l~s~~~dg~-----i~vwd~~~~~~~~~~~~~~- 283 (413)
.... .......++++ ...++. .+.-.|..++..+|+..++.+-..|. -.+=-...++.+.-+..+.
T Consensus 198 sMePSlvlld~atG~li----ekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee 273 (366)
T COG3490 198 SMEPSLVLLDAATGNLI----EKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEE 273 (366)
T ss_pred hcCccEEEEeccccchh----hhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHH
Confidence 0000 00000000000 011111 23445677777777765554433321 1111112334333333221
Q ss_pred -----CCceeeEEEccCCcEEEEEC-CCCeEEEEEeCCceeeeeecCCceeEEEecCCCCEEEEeCCCCeEEEEE
Q 040361 284 -----GSALSKLAASRHGRIVLYGD-DDLSLHLFSINGKHLASSESNGRLNCLELSACGQFLVCGGDQGQIVVRS 352 (413)
Q Consensus 284 -----~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d 352 (413)
...|-+++.+.+...++..+ ..+...+||.....+.....--....++ +...-+++.+.+|.+.++.
T Consensus 274 ~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~daaGva--~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 274 QTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPDAAGVA--AAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred HHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccccccccce--eccCceEEecCCceEEecc
Confidence 13466777776555554444 4557789999855544432212222232 3444466677788888774
No 408
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.22 E-value=0.098 Score=51.85 Aligned_cols=139 Identities=19% Similarity=0.070 Sum_probs=89.1
Q ss_pred CeEEEEEecCCCE--EEEeeCCCcEEEEEccCCeEEE-----EEe-----CCCCCceeeEEEccCC-cEEEEECCCCeEE
Q 040361 243 IITCLYVSVELDI--VISGSKDGTCVFHTLREGRYVR-----SLC-----HPSGSALSKLAASRHG-RIVLYGDDDLSLH 309 (413)
Q Consensus 243 ~i~~~~~~~~~~~--l~s~~~dg~i~vwd~~~~~~~~-----~~~-----~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~ 309 (413)
++..+...+|+.. ++..+.+-.|..||+++-...+ -+. ........++.|+|.- ...++...|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 5555666667553 3334445578899987543221 111 1112345667788753 3456667788888
Q ss_pred EEEeCC--ceeeeeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCC----CCcEEEEEEccCCeEEE
Q 040361 310 LFSING--KHLASSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGV----GKIITSLAVTPEECFLA 382 (413)
Q Consensus 310 i~d~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~ 382 (413)
+..+.. ..+.........++++|+|.|+.++.|..+|++.-|... ++....+.+. ...|.++.|.....+++
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflv 259 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLV 259 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEE
Confidence 887762 223334566778999999999999999999999988654 3433444321 36799999987755554
No 409
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.15 E-value=0.66 Score=38.92 Aligned_cols=189 Identities=13% Similarity=0.130 Sum_probs=111.7
Q ss_pred cEEEEeec-CCCeEEEEEECCCCCEEEEccCCC--cEEEEEeccccccccccccceeecCCCceeeecCceeeeec-CCC
Q 040361 167 RVVQSIRQ-HRDVVSCVAVTTDGSILATGSYDT--TVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCG-HDD 242 (413)
Q Consensus 167 ~~~~~~~~-h~~~v~~~~~~~~~~~l~s~s~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~ 242 (413)
+.+..+.. ...-...+.|..++.++-+.+.-| .|+.+|+.+++.. ....- ...
T Consensus 34 ~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~-----------------------~~~~l~~~~ 90 (264)
T PF05096_consen 34 EVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVL-----------------------QSVPLPPRY 90 (264)
T ss_dssp EEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEE-----------------------EEEE-TTT-
T ss_pred EEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEE-----------------------EEEECCccc
Confidence 34455542 234456777867888888877766 6888888887621 11110 111
Q ss_pred CeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCceee-e-
Q 040361 243 IITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKHLA-S- 320 (413)
Q Consensus 243 ~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~- 320 (413)
--..++...+ ++..-.-.++...+||..+.+.+.++..+. .=..++ .+++.|+.+.....|+++|.+.-... .
T Consensus 91 FgEGit~~~d-~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~--EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i 165 (264)
T PF05096_consen 91 FGEGITILGD-KLYQLTWKEGTGFVYDPNTLKKIGTFPYPG--EGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTI 165 (264)
T ss_dssp -EEEEEEETT-EEEEEESSSSEEEEEETTTTEEEEEEE-SS--S--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEE
T ss_pred cceeEEEECC-EEEEEEecCCeEEEEccccceEEEEEecCC--cceEEE--cCCCEEEEECCccceEEECCcccceEEEE
Confidence 1122333322 333444568899999999999999887653 335555 56777888877889999998743221 1
Q ss_pred --eecC---CceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecC------------C---CCcEEEEEEccC-Ce
Q 040361 321 --SESN---GRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSG------------V---GKIITSLAVTPE-EC 379 (413)
Q Consensus 321 --~~~~---~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~------------~---~~~v~~~~~~~~-~~ 379 (413)
.... ..++.+.+- +|...|=.-....|...|..+|+.+..+.- . .+-.+.|++.|+ ++
T Consensus 166 ~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~ 244 (264)
T PF05096_consen 166 QVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDR 244 (264)
T ss_dssp E-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTE
T ss_pred EEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCE
Confidence 1222 245566665 676666666677888889999988876520 1 346899999887 45
Q ss_pred EE-EEc
Q 040361 380 FL-AGT 384 (413)
Q Consensus 380 ~l-~~~ 384 (413)
++ +|-
T Consensus 245 l~vTGK 250 (264)
T PF05096_consen 245 LFVTGK 250 (264)
T ss_dssp EEEEET
T ss_pred EEEEeC
Confidence 55 454
No 410
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.11 E-value=1 Score=40.89 Aligned_cols=270 Identities=14% Similarity=0.098 Sum_probs=139.9
Q ss_pred CCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEec---CC-CCEEEEeecCCCeEEEEEcC--CCc---
Q 040361 97 GGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQT---PS-ENFLITCGNWENSFQVIALN--DGR--- 167 (413)
Q Consensus 97 ~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~l~~~g~~d~~i~i~~~~--~~~--- 167 (413)
+...++.|+..|.++++.-........ .+.-......+++.+..- +. ....++.=. -..+.||.+. .|.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~-~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLh-P~kl~vY~v~~~~g~~~~ 113 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPE-DLLLETQLKDPILQVECGKFVSGSEDLQLAVLH-PRKLSVYSVSLVDGTVEH 113 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCc-cEEEEEecCCcEEEEEeccccCCCCcceEEEec-CCEEEEEEEEecCCCccc
Confidence 346788888899998863211111110 111122234455544332 22 223333333 6788888772 121
Q ss_pred ----EEEEeecCC--CeEEEEEECC----C-CCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceee
Q 040361 168 ----VVQSIRQHR--DVVSCVAVTT----D-GSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHI 236 (413)
Q Consensus 168 ----~~~~~~~h~--~~v~~~~~~~----~-~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (413)
.+..+..|. .....+++-| . ..++..-+.||.+.+++-+.-.. ...
T Consensus 114 g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f-----------------------~~~ 170 (418)
T PF14727_consen 114 GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAF-----------------------SRF 170 (418)
T ss_pred CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEE-----------------------EEE
Confidence 222222332 2222333322 2 46788889999999998654330 111
Q ss_pred eecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccC--------------------Ce---EEEEEeCCCCCceeeEEEc
Q 040361 237 LCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLRE--------------------GR---YVRSLCHPSGSALSKLAAS 293 (413)
Q Consensus 237 ~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~--------------------~~---~~~~~~~~~~~~v~~~~~~ 293 (413)
+.. .--.-.+.+.+..+.+++++.+..+..|.... ++ +.+++.. +..+..+..-
T Consensus 171 lp~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nl--GE~~l~i~v~ 247 (418)
T PF14727_consen 171 LPD-FLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNL--GEQALDIQVV 247 (418)
T ss_pred cCC-CCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEEC--CceeEEEEEE
Confidence 111 11112356777777888888888887775421 00 1122222 2234444332
Q ss_pred c---CCcEEEEECCCCeEEEEEeCCceeeeeecCCceeEEE-ec----CCC---CEEEEeCCCCeEEEEECCCCceEEEe
Q 040361 294 R---HGRIVLYGDDDLSLHLFSINGKHLASSESNGRLNCLE-LS----ACG---QFLVCGGDQGQIVVRSMNSLEVVRRY 362 (413)
Q Consensus 294 ~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~~-~s----~~~---~~l~~~~~dg~i~v~d~~~~~~~~~~ 362 (413)
. ....+++-+ ...+.+.+.+|........+....|+. |. .++ ..+++++.++.+.||.= .+++...
T Consensus 248 ~~~~~~~~IvvLg-er~Lf~l~~~G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d--~~L~WsA 324 (418)
T PF14727_consen 248 RFSSSESDIVVLG-ERSLFCLKDNGSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYED--TTLVWSA 324 (418)
T ss_pred EcCCCCceEEEEe-cceEEEEcCCCeEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeC--CeEEEec
Confidence 2 222333333 246777777775544445555544443 11 122 25888999999999963 3444444
Q ss_pred cCCCCcEEEEEEcc----CCeEEEEcCCCeEEEEEecCCc
Q 040361 363 SGVGKIITSLAVTP----EECFLAGTKDGCLLVYSIENRR 398 (413)
Q Consensus 363 ~~~~~~v~~~~~~~----~~~~l~~~~dg~i~vw~~~~~~ 398 (413)
+....+| ++.... +|.+++-+.+|.+.+-=+.+.-
T Consensus 325 ~l~~~PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdP 363 (418)
T PF14727_consen 325 QLPHVPV-ALSVANFNGLKGLIVSLSDEGQLSVSYLGTDP 363 (418)
T ss_pred CCCCCCE-EEEecccCCCCceEEEEcCCCcEEEEEeCCCC
Confidence 3333333 443332 4777788899999988776643
No 411
>PHA03098 kelch-like protein; Provisional
Probab=96.10 E-value=0.63 Score=44.54 Aligned_cols=142 Identities=12% Similarity=0.056 Sum_probs=70.0
Q ss_pred CCCEEEEeeCCC-----cEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCC------CeEEEEEeCCceeee
Q 040361 252 ELDIVISGSKDG-----TCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDD------LSLHLFSINGKHLAS 320 (413)
Q Consensus 252 ~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~ 320 (413)
++.+++.|+.++ .+..||..+.+-...-..+.. .....+..-++++.+.|+.+ ..+..||+....-..
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~-r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~ 420 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFP-RYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSK 420 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcC-CccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeee
Confidence 566777777653 466788776553321111111 11111222356777777632 357888887543322
Q ss_pred ee---cCCceeEEEecCCCCEEEEeCCC--------CeEEEEECCCCceE--EEecCCCCcEEEEEEccCCeEE-EEcCC
Q 040361 321 SE---SNGRLNCLELSACGQFLVCGGDQ--------GQIVVRSMNSLEVV--RRYSGVGKIITSLAVTPEECFL-AGTKD 386 (413)
Q Consensus 321 ~~---~~~~i~~~~~s~~~~~l~~~~~d--------g~i~v~d~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l-~~~~d 386 (413)
.. ....-.++ ...+++.++.|+.+ ..+.+||..+.+-. ..+.........+.+ +++++ .|+.+
T Consensus 421 ~~~~p~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~ 497 (534)
T PHA03098 421 GSPLPISHYGGCA-IYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDK 497 (534)
T ss_pred cCCCCccccCceE-EEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCc
Confidence 11 01111122 22356677777643 23888998765432 222211111122222 55554 46643
Q ss_pred -----CeEEEEEecCC
Q 040361 387 -----GCLLVYSIENR 397 (413)
Q Consensus 387 -----g~i~vw~~~~~ 397 (413)
..+.+||.++.
T Consensus 498 ~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 498 YEYYINEIEVYDDKTN 513 (534)
T ss_pred CCcccceeEEEeCCCC
Confidence 46888887764
No 412
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.93 E-value=0.7 Score=44.13 Aligned_cols=184 Identities=16% Similarity=0.130 Sum_probs=95.8
Q ss_pred CeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCcee
Q 040361 156 NSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFH 235 (413)
Q Consensus 156 ~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (413)
-.|+||++ +|+.+..+....+.+..+.|+.+. .|+....||++.+|++......... .
T Consensus 64 ~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ie~~s--------------------v 121 (829)
T KOG2280|consen 64 PYIRIFNI-SGQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFIESNS--------------------V 121 (829)
T ss_pred eeEEEEec-cccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhhhcccc--------------------c
Confidence 35888887 677777666555588899998765 5666689999999998654311100 0
Q ss_pred eeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEE--ccCC---cEEEEECCCCeEEE
Q 040361 236 ILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAA--SRHG---RIVLYGDDDLSLHL 310 (413)
Q Consensus 236 ~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~---~~l~~~~~d~~i~i 310 (413)
........|..+.+..+|-.+++ .+|.+.+-+-......+++..-........+| .+++ ..++-....--..+
T Consensus 122 g~e~~~~~I~ec~~f~~GVavlt--~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~ 199 (829)
T KOG2280|consen 122 GFESQMSDIVECRFFHNGVAVLT--VSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHI 199 (829)
T ss_pred ccccccCceeEEEEecCceEEEe--cCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcc
Confidence 01122233444444445433333 34555543322222233332211111111222 2221 11111110000111
Q ss_pred EEeC--Cceeeee-ecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEec
Q 040361 311 FSIN--GKHLASS-ESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYS 363 (413)
Q Consensus 311 ~d~~--~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~ 363 (413)
+-.. ....... .....+..+++||+.++|+.=...|.|.+-+....+....+.
T Consensus 200 ~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 200 CQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred cceecccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 1111 1111111 223678889999999999999999999998887766665554
No 413
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.93 E-value=1 Score=39.09 Aligned_cols=150 Identities=12% Similarity=0.088 Sum_probs=82.0
Q ss_pred cCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeC--Cc
Q 040361 239 GHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSIN--GK 316 (413)
Q Consensus 239 ~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~ 316 (413)
.-.+.+..+.-++++++++++..-....-||-.... -..........+.++.|.|++.+.+.+ ..|.|++=+.. ..
T Consensus 142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~-w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~ 219 (302)
T PF14870_consen 142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT-WQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGE 219 (302)
T ss_dssp S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS--EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEE
T ss_pred CCcceeEeEEECCCCcEEEEECcccEEEEecCCCcc-ceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcc
Confidence 344678888889999988887655555677753221 122222234589999999998876655 77788877722 11
Q ss_pred eeee----e-ecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEec---CCCCcEEEEEEccCCeEEEEcCCCe
Q 040361 317 HLAS----S-ESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYS---GVGKIITSLAVTPEECFLAGTKDGC 388 (413)
Q Consensus 317 ~~~~----~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~dg~ 388 (413)
.... . .....+..++|.+++...++|+.. .+ +.....|+.-..-+ .-...+..+.|.++.+-++.+.+|.
T Consensus 220 ~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G-~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ 297 (302)
T PF14870_consen 220 TWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG-TL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGV 297 (302)
T ss_dssp EE---B-TTSS--S-EEEEEESSSS-EEEEESTT--E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-STTE
T ss_pred ccccccCCcccCceeeEEEEecCCCCEEEEeCCc-cE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEECCCcE
Confidence 1111 1 223457899999998888877654 33 44555555544433 2345688899987778788888898
Q ss_pred EEEE
Q 040361 389 LLVY 392 (413)
Q Consensus 389 i~vw 392 (413)
|.-|
T Consensus 298 ll~~ 301 (302)
T PF14870_consen 298 LLRY 301 (302)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8766
No 414
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=95.90 E-value=0.94 Score=38.58 Aligned_cols=204 Identities=15% Similarity=0.097 Sum_probs=114.7
Q ss_pred eEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeec-----CCCCeEEEEEecC
Q 040361 178 VVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCG-----HDDIITCLYVSVE 252 (413)
Q Consensus 178 ~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----h~~~i~~~~~~~~ 252 (413)
.-+.|+++|.+.+-++....+...+||.......-... . .+..+.. -....+.+.|+..
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~-~---------------L~vtiP~~~~~~~~~~PTGiVfN~~ 87 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQD-P---------------LVVVIPAPPPLAAEGTPTGQVFNGS 87 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCcc-c---------------eEEEecCCCCCCCCCCccEEEEeCC
Confidence 45689999998888888888899999986322110000 0 0111110 1223455555432
Q ss_pred C------------CEEEEeeCCCcEEEEEccCCeE-----EEEEeCC-CCCceeeEEEccC--CcEEEEE-CCCCeEEEE
Q 040361 253 L------------DIVISGSKDGTCVFHTLREGRY-----VRSLCHP-SGSALSKLAASRH--GRIVLYG-DDDLSLHLF 311 (413)
Q Consensus 253 ~------------~~l~s~~~dg~i~vwd~~~~~~-----~~~~~~~-~~~~v~~~~~~~~--~~~l~~~-~~d~~i~i~ 311 (413)
. ..++.+++||+|.-|...-+.. ...+... .+..-..+++... +.+|+.+ -..++|.+|
T Consensus 88 ~~F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVF 167 (336)
T TIGR03118 88 DTFVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVF 167 (336)
T ss_pred CceEEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEe
Confidence 2 2367889999999998532211 1222221 1222344555533 4555544 467899999
Q ss_pred EeCCceeeee-ecCC----------ce---------eEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEec--CCCCcE
Q 040361 312 SINGKHLASS-ESNG----------RL---------NCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYS--GVGKII 369 (413)
Q Consensus 312 d~~~~~~~~~-~~~~----------~i---------~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~--~~~~~v 369 (413)
|-.-.++... .... .| +-..-.++++.=+.|..-|.|-+||+. ++.++++. +.-...
T Consensus 168 d~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaP 246 (336)
T TIGR03118 168 KGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAP 246 (336)
T ss_pred cCccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCC
Confidence 8763332210 0000 11 111112233333445556899999975 67888774 233556
Q ss_pred EEEEEccC------CeEEEE-cCCCeEEEEEecCCc
Q 040361 370 TSLAVTPE------ECFLAG-TKDGCLLVYSIENRR 398 (413)
Q Consensus 370 ~~~~~~~~------~~~l~~-~~dg~i~vw~~~~~~ 398 (413)
+.|+..|- +.+|+| -.||+|..||..+++
T Consensus 247 WG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 247 WGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred ceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCc
Confidence 78888763 457764 369999999998876
No 415
>PHA02790 Kelch-like protein; Provisional
Probab=95.83 E-value=1.5 Score=41.23 Aligned_cols=99 Identities=12% Similarity=0.091 Sum_probs=49.9
Q ss_pred CCCEEEEeeCCC---cEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCceeeeee---c-C
Q 040361 252 ELDIVISGSKDG---TCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKHLASSE---S-N 324 (413)
Q Consensus 252 ~~~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~---~-~ 324 (413)
++++.+.|+.++ .+..||.++.+-...-..+.. .....+..-++++.+.|+ .+.+||.+...-.... . .
T Consensus 362 ~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~-r~~~~~~~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r 437 (480)
T PHA02790 362 NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYP-HYKSCALVFGRRLFLVGR---NAEFYCESSNTWTLIDDPIYPR 437 (480)
T ss_pred CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCc-cccceEEEECCEEEEECC---ceEEecCCCCcEeEcCCCCCCc
Confidence 566777777654 466788776654332111111 111122234566666664 4678888744322211 1 1
Q ss_pred CceeEEEecCCCCEEEEeCCC-----CeEEEEECCCC
Q 040361 325 GRLNCLELSACGQFLVCGGDQ-----GQIVVRSMNSL 356 (413)
Q Consensus 325 ~~i~~~~~s~~~~~l~~~~~d-----g~i~v~d~~~~ 356 (413)
.....+. -+|+..++|+.+ ..+..||..+.
T Consensus 438 ~~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 438 DNPELII--VDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred cccEEEE--ECCEEEEECCcCCCcccceEEEEECCCC
Confidence 1122222 267777887754 34666666654
No 416
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.81 E-value=0.081 Score=52.38 Aligned_cols=143 Identities=8% Similarity=-0.091 Sum_probs=91.5
Q ss_pred eeEEEEecCCCCEEEEeec-CCCeEEEEEcCCCcEE-----EEe------ecCCCeEEEEEECCC-CCEEEEccCCCcEE
Q 040361 135 QCFTTMQTPSENFLITCGN-WENSFQVIALNDGRVV-----QSI------RQHRDVVSCVAVTTD-GSILATGSYDTTVM 201 (413)
Q Consensus 135 ~~~~~~~~~~~~~l~~~g~-~d~~i~i~~~~~~~~~-----~~~------~~h~~~v~~~~~~~~-~~~l~s~s~dg~i~ 201 (413)
.++....++|+...++.-+ ++-.|..||+.+-... .-+ ........++.|.|. ....+....|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 4455666777666555443 3447888998642211 111 112344567888885 33466778899998
Q ss_pred EEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeC
Q 040361 202 VWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCH 281 (413)
Q Consensus 202 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 281 (413)
+..+..... .+.. .......+|++|+|.|+.++.|-..|++.-|.. +++....+..
T Consensus 182 V~~~~~~~~----------------------~v~s-~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~ 237 (1405)
T KOG3630|consen 182 VKSTKQLAQ----------------------NVTS-FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPE 237 (1405)
T ss_pred hhhhhhhhh----------------------hhcc-cCcccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccC
Confidence 887754431 1111 234567899999999999999999999998875 4554444433
Q ss_pred C---CCCceeeEEEccCCcEEEE
Q 040361 282 P---SGSALSKLAASRHGRIVLY 301 (413)
Q Consensus 282 ~---~~~~v~~~~~~~~~~~l~~ 301 (413)
+ ....|.+++|-....++++
T Consensus 238 Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 238 PPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred CCcCCCcceeEEEEecceeEEEE
Confidence 2 1357889999887776655
No 417
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=95.81 E-value=1.4 Score=39.88 Aligned_cols=187 Identities=14% Similarity=0.108 Sum_probs=98.6
Q ss_pred cCCCeEEEEEcCCCcEEEEeecC--CCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeee
Q 040361 153 NWENSFQVIALNDGRVVQSIRQH--RDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIV 230 (413)
Q Consensus 153 ~~d~~i~i~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (413)
..+|.|.-.|.++++.+.....- ...+..-.+..+|+ ++.++.++.+..+|.++++.
T Consensus 75 ~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~-------------------- 133 (370)
T COG1520 75 TRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTL-------------------- 133 (370)
T ss_pred cCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcE--------------------
Confidence 44888888888888866433321 12233323333665 77888889888888876662
Q ss_pred cCceeeeecCC-CCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCC--CCceeeEEEccCCcEEEEECC--C
Q 040361 231 ETPFHILCGHD-DIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPS--GSALSKLAASRHGRIVLYGDD--D 305 (413)
Q Consensus 231 ~~~~~~~~~h~-~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~--d 305 (413)
+-...... ..+..-..-.++ .+..++.++.+...|..+|+......... ...+..-... ....++.+.. +
T Consensus 134 ---~W~~~~~~~~~~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~-~~~~vy~~~~~~~ 208 (370)
T COG1520 134 ---VWSRNVGGSPYYASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAI-ASGTVYVGSDGYD 208 (370)
T ss_pred ---EEEEecCCCeEEecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCcee-ecceEEEecCCCc
Confidence 22222222 111111222233 34444467888888888888877765432 1111111111 2334444444 5
Q ss_pred CeEEEEEeC-CceeeeeecCCceeE-----EEecCC-----CCEEEEeCCCCeEEEEECCCCceEEEecCC
Q 040361 306 LSLHLFSIN-GKHLASSESNGRLNC-----LELSAC-----GQFLVCGGDQGQIVVRSMNSLEVVRRYSGV 365 (413)
Q Consensus 306 ~~i~i~d~~-~~~~~~~~~~~~i~~-----~~~s~~-----~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~ 365 (413)
+.+.-+|.. +...........+.. ...... +.-+..++.+|.+...|..+++.+.++...
T Consensus 209 ~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 209 GILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred ceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 566666764 444333211111110 111111 222356667788888999999988877653
No 418
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=95.76 E-value=0.82 Score=36.86 Aligned_cols=137 Identities=12% Similarity=0.157 Sum_probs=80.4
Q ss_pred CEEEEeeCCCcEEEEEccC--CeEEEEEeCCCCCceeeEEEccCCcEEEEECCC---C---eEEEE-EeC-----Cceee
Q 040361 254 DIVISGSKDGTCVFHTLRE--GRYVRSLCHPSGSALSKLAASRHGRIVLYGDDD---L---SLHLF-SIN-----GKHLA 319 (413)
Q Consensus 254 ~~l~s~~~dg~i~vwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~---~i~i~-d~~-----~~~~~ 319 (413)
+.|..+...+.|.+|++.. .+...++.. -+.|..+.++..|+++++--.+ . .+++| |.+ ...+.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T--v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~ 106 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST--VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR 106 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc--hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE
Confidence 3444445677899999983 344555544 3578999999999999995432 2 56665 111 11111
Q ss_pred -----------------------eeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCce-EE-----Eec----CC-
Q 040361 320 -----------------------SSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEV-VR-----RYS----GV- 365 (413)
Q Consensus 320 -----------------------~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~-~~-----~~~----~~- 365 (413)
......++.+++..|-..-|++|+. +.+.+|.+..... .. .|. .|
T Consensus 107 vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~ 185 (215)
T PF14761_consen 107 VRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCG-NKLVLFTLKYQTIQSEKFSFLDFERSLIDHI 185 (215)
T ss_pred EEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcC-CEEEEEEEEEEEEecccccEEechhhhhhee
Confidence 1123346778888886555566654 4788887764322 11 111 11
Q ss_pred C-CcEEEEEEccCCeEEEEcCCCeEEEEEec
Q 040361 366 G-KIITSLAVTPEECFLAGTKDGCLLVYSIE 395 (413)
Q Consensus 366 ~-~~v~~~~~~~~~~~l~~~~dg~i~vw~~~ 395 (413)
. -.+..+++. +.++|.-.+-.+++.++.
T Consensus 186 ~~~~p~~v~ic--~~yiA~~s~~ev~Vlkl~ 214 (215)
T PF14761_consen 186 DNFKPTQVAIC--EGYIAVMSDLEVLVLKLE 214 (215)
T ss_pred cCceEEEEEEE--eeEEEEecCCEEEEEEEe
Confidence 1 124445554 458887788888888764
No 419
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.75 E-value=0.95 Score=43.26 Aligned_cols=110 Identities=15% Similarity=0.108 Sum_probs=72.0
Q ss_pred CCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEc--cCCcEEEEECCCCeEEEEEeC-----
Q 040361 242 DIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAAS--RHGRIVLYGDDDLSLHLFSIN----- 314 (413)
Q Consensus 242 ~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~i~d~~----- 314 (413)
....-+.-+.-++..+.-+....+.|||.+.+.............|.++.|. |+++.+++.+-.+.|.+|.-.
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 3444455555444444444455799999999887666555445689999885 578888888888889888542
Q ss_pred --C------ceeeeee-cCCceeEEEecCCCCEEEEeCCCCeEEEEEC
Q 040361 315 --G------KHLASSE-SNGRLNCLELSACGQFLVCGGDQGQIVVRSM 353 (413)
Q Consensus 315 --~------~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~ 353 (413)
+ +.+.... ...+|.+..|.++|.+++.++ +.+.|+|-
T Consensus 110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 110 NKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred cCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 1 0111112 336788999999987665543 46788764
No 420
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.59 E-value=1 Score=36.70 Aligned_cols=122 Identities=9% Similarity=-0.038 Sum_probs=72.8
Q ss_pred CceeeEEEccCCcEEEEECC---------CCeEEEEEeCCceeeeeecCCceeEEEecCCCCEE-EEeCCCCeEEEEE--
Q 040361 285 SALSKLAASRHGRIVLYGDD---------DLSLHLFSINGKHLASSESNGRLNCLELSACGQFL-VCGGDQGQIVVRS-- 352 (413)
Q Consensus 285 ~~v~~~~~~~~~~~l~~~~~---------d~~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l-~~~~~dg~i~v~d-- 352 (413)
...+.-..+|+|++++-... .|.++.|-...+.-.....-+--+.++|+.+.+.+ ++-+.+-.|.-||
T Consensus 109 nR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd 188 (310)
T KOG4499|consen 109 NRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYD 188 (310)
T ss_pred cccccCccCCCCceeeeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeeeecC
Confidence 35566678999998443322 24566665554443333333445678888776654 4556677787777
Q ss_pred CCCCce-----EEEecC----CCCcEEEEEEccCCeE-EEEcCCCeEEEEEecCCccccccccc
Q 040361 353 MNSLEV-----VRRYSG----VGKIITSLAVTPEECF-LAGTKDGCLLVYSIENRRTSLPRNVK 406 (413)
Q Consensus 353 ~~~~~~-----~~~~~~----~~~~v~~~~~~~~~~~-l~~~~dg~i~vw~~~~~~~~~~~~~~ 406 (413)
..+|.. +..++. ..-..-.++...+|.+ +++-..++|.-.|..+++......+.
T Consensus 189 ~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP 252 (310)
T KOG4499|consen 189 CPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLP 252 (310)
T ss_pred CCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcC
Confidence 555432 222221 1112234555556654 46777889999999999887766554
No 421
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.53 E-value=1.6 Score=39.43 Aligned_cols=138 Identities=14% Similarity=0.071 Sum_probs=78.3
Q ss_pred CCeEEEEEecCCCEEEEee-----------CCC-cEEEEEccC--CeE--EEEEeCCCCCceeeEEEccCCcEEEEECCC
Q 040361 242 DIITCLYVSVELDIVISGS-----------KDG-TCVFHTLRE--GRY--VRSLCHPSGSALSKLAASRHGRIVLYGDDD 305 (413)
Q Consensus 242 ~~i~~~~~~~~~~~l~s~~-----------~dg-~i~vwd~~~--~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 305 (413)
.....|+|.++|+++++-. ..+ .|.+++-.+ |+. ...+... -.....+++.+++ +++++..
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~-l~~p~Gi~~~~~G--lyV~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEE-LSMVTGLAVAVGG--VYVATPP 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecC-CCCccceeEecCC--EEEeCCC
Confidence 3456889999999877643 223 677776432 332 2333322 2245788998888 4444544
Q ss_pred CeEEEEEeCC------ce--eee-ee-----cCCceeEEEecCCCCEEEEeCC-------------------CCeEEEEE
Q 040361 306 LSLHLFSING------KH--LAS-SE-----SNGRLNCLELSACGQFLVCGGD-------------------QGQIVVRS 352 (413)
Q Consensus 306 ~~i~i~d~~~------~~--~~~-~~-----~~~~i~~~~~s~~~~~l~~~~~-------------------dg~i~v~d 352 (413)
...++.|.++ +. +.. .. .......++|.|||.+.++-+. .|.|.-++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 3333445542 11 111 11 1344778999999987665441 14566666
Q ss_pred CCCCceEEEecCCCCcEEEEEEccCCeEEEE
Q 040361 353 MNSLEVVRRYSGVGKIITSLAVTPEECFLAG 383 (413)
Q Consensus 353 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 383 (413)
...++.. .+...-.....++|+++|.++++
T Consensus 171 pdg~~~e-~~a~G~rnp~Gl~~d~~G~l~~t 200 (367)
T TIGR02604 171 PDGGKLR-VVAHGFQNPYGHSVDSWGDVFFC 200 (367)
T ss_pred cCCCeEE-EEecCcCCCccceECCCCCEEEE
Confidence 6554432 33222234678999999877653
No 422
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.32 E-value=1.5 Score=37.12 Aligned_cols=149 Identities=17% Similarity=0.145 Sum_probs=87.6
Q ss_pred eeEEEEecCCCCEEEEeecCC--CeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEE-ecccccc
Q 040361 135 QCFTTMQTPSENFLITCGNWE--NSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWE-VIRARAP 211 (413)
Q Consensus 135 ~~~~~~~~~~~~~l~~~g~~d--~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~-~~~~~~~ 211 (413)
.+.+.+.+++++.+++....+ ..++++.. +.....+. -...+..-.|++++...+....+...+++. ...+...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 567788899999888877323 35555543 33322221 223778889999987777666666666664 2222210
Q ss_pred ccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEee---CCCcEEEEEcc---CC--eEE---EEEe
Q 040361 212 EKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGS---KDGTCVFHTLR---EG--RYV---RSLC 280 (413)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~---~dg~i~vwd~~---~~--~~~---~~~~ 280 (413)
.. .+. ...-...|+.+.++|||..++... .++.|.+--+. .+ ..+ ..+.
T Consensus 102 ~~-------------------~v~-~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~ 161 (253)
T PF10647_consen 102 PV-------------------EVD-WPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVA 161 (253)
T ss_pred eE-------------------Eec-ccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEec
Confidence 00 011 111112899999999999776554 35677766543 22 010 1111
Q ss_pred CCCCCceeeEEEccCCcEEEEECCCC
Q 040361 281 HPSGSALSKLAASRHGRIVLYGDDDL 306 (413)
Q Consensus 281 ~~~~~~v~~~~~~~~~~~l~~~~~d~ 306 (413)
......+..+.|.+++.+++.+...+
T Consensus 162 ~~~~~~v~~v~W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 162 PPLLSDVTDVAWSDDSTLVVLGRSAG 187 (253)
T ss_pred ccccCcceeeeecCCCEEEEEeCCCC
Confidence 12235788999999998877766544
No 423
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.31 E-value=1.6 Score=42.36 Aligned_cols=109 Identities=11% Similarity=0.134 Sum_probs=73.4
Q ss_pred CeEEEEEe--cCCCEEEEeeCCCcEEEEEccC-------C----e---------EEEEEeCCCCCceeeEEEc--cCCcE
Q 040361 243 IITCLYVS--VELDIVISGSKDGTCVFHTLRE-------G----R---------YVRSLCHPSGSALSKLAAS--RHGRI 298 (413)
Q Consensus 243 ~i~~~~~~--~~~~~l~s~~~dg~i~vwd~~~-------~----~---------~~~~~~~~~~~~v~~~~~~--~~~~~ 298 (413)
.|+-|... -+...|+.|..||.|.+|.+++ . . +...+. .+..++++++. ...++
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~--v~~SaWGLdIh~~~~~rl 179 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR--VGASAWGLDIHDYKKSRL 179 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee--cCCceeEEEEEecCcceE
Confidence 34444443 3456899999999999996531 1 0 111122 23468889988 77888
Q ss_pred EEEECCCCeEEEEEeCC--cee-e--eeecCCceeEEEecCCC---C---EEEEeCCCCeEEEEEC
Q 040361 299 VLYGDDDLSLHLFSING--KHL-A--SSESNGRLNCLELSACG---Q---FLVCGGDQGQIVVRSM 353 (413)
Q Consensus 299 l~~~~~d~~i~i~d~~~--~~~-~--~~~~~~~i~~~~~s~~~---~---~l~~~~~dg~i~v~d~ 353 (413)
||+++....|.+|-... ... . ...+...|-+++|-++. . .|++++-.|.+.+|++
T Consensus 180 IAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 180 IAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 99998888888876542 111 1 22466788899998753 2 7888889999999887
No 424
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.25 E-value=2.2 Score=38.52 Aligned_cols=202 Identities=13% Similarity=0.066 Sum_probs=88.5
Q ss_pred CCCEEEEcc-CCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeC----
Q 040361 187 DGSILATGS-YDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSK---- 261 (413)
Q Consensus 187 ~~~~l~s~s-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~---- 261 (413)
+.++|+..+ ..+.|.+.|+.+.....+..+..... .+..-.+ -..-..+..-|+|++++|+-.
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~-----------ev~~k~g-~s~PHT~Hclp~G~imIS~lGd~~G 153 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPE-----------EVFEKTG-LSRPHTVHCLPDGRIMISALGDADG 153 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HH-----------HHHHHH--EEEEEEEEE-SS--EEEEEEEETTS
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHH-----------HHHhhcC-CCCCceeeecCCccEEEEeccCCCC
Confidence 456666655 77889999997554322221111000 0000000 011223344578888877532
Q ss_pred --CCcEEEEEccCCeEEEEEeCCCC--CceeeEEEccCCcEEEEECC--------------------CCeEEEEEeCCce
Q 040361 262 --DGTCVFHTLREGRYVRSLCHPSG--SALSKLAASRHGRIVLYGDD--------------------DLSLHLFSINGKH 317 (413)
Q Consensus 262 --dg~i~vwd~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~--------------------d~~i~i~d~~~~~ 317 (413)
-|-+.+.|-++.+.....+...+ .--..+.+.|..+.++++.- ..++.+||+...+
T Consensus 154 ~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~ 233 (461)
T PF05694_consen 154 NGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRK 233 (461)
T ss_dssp -S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTE
T ss_pred CCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCc
Confidence 34688888887777776654322 23456777888888887642 3589999999665
Q ss_pred eee-ee--cCC-ceeEEEecC--CCCEEEEeC-CCCeEEEE-ECCCCc----eEEEecCC-----------------CCc
Q 040361 318 LAS-SE--SNG-RLNCLELSA--CGQFLVCGG-DQGQIVVR-SMNSLE----VVRRYSGV-----------------GKI 368 (413)
Q Consensus 318 ~~~-~~--~~~-~i~~~~~s~--~~~~l~~~~-~dg~i~v~-d~~~~~----~~~~~~~~-----------------~~~ 368 (413)
+.. .. .++ .+..+.|.. +..+-++|+ -..+|..| ....++ .+..+..- ..-
T Consensus 234 ~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~L 313 (461)
T PF05694_consen 234 LLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPL 313 (461)
T ss_dssp EEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE---
T ss_pred EeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCc
Confidence 554 32 222 355666654 444433332 33344444 323332 22222210 234
Q ss_pred EEEEEEccCCeEE--EEcCCCeEEEEEecCCccc
Q 040361 369 ITSLAVTPEECFL--AGTKDGCLLVYSIENRRTS 400 (413)
Q Consensus 369 v~~~~~~~~~~~l--~~~~dg~i~vw~~~~~~~~ 400 (413)
|+.|..|.|.++| ++-.+|.|+.||+.....+
T Consensus 314 itDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~P 347 (461)
T PF05694_consen 314 ITDILISLDDRFLYVSNWLHGDVRQYDISDPFNP 347 (461)
T ss_dssp ---EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-
T ss_pred eEeEEEccCCCEEEEEcccCCcEEEEecCCCCCC
Confidence 7999999998766 4778999999999986544
No 425
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.24 E-value=2.6 Score=39.34 Aligned_cols=122 Identities=9% Similarity=0.123 Sum_probs=70.4
Q ss_pred CCCeEEEEEECCC----CCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCC----CeEE
Q 040361 175 HRDVVSCVAVTTD----GSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDD----IITC 246 (413)
Q Consensus 175 h~~~v~~~~~~~~----~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~----~i~~ 246 (413)
.-..|..++|.|- ...|++......|.+|.+......... .+. ........ --..
T Consensus 55 qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K------------~l~-----sQtcEi~e~~pvLpQG 117 (671)
T PF15390_consen 55 QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNK------------LLM-----SQTCEIREPFPVLPQG 117 (671)
T ss_pred ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCcccccc------------cee-----eeeeeccCCcccCCCc
Confidence 3456889999983 334555566789999998643211110 000 00111111 1235
Q ss_pred EEEecCCCEEEEeeCCCcEEEEEccCC--eEEEEEeCCCCCceeeEEEccCCcEEEEECCC-CeEEEEEeCC
Q 040361 247 LYVSVELDIVISGSKDGTCVFHTLREG--RYVRSLCHPSGSALSKLAASRHGRIVLYGDDD-LSLHLFSING 315 (413)
Q Consensus 247 ~~~~~~~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~i~i~d~~~ 315 (413)
+.|+|....|+.-.....=.+++.+.. +....++ ..+.|.+.+|.+||+.|+++-.. =.-++||-..
T Consensus 118 CVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~--~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 118 CVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK--TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred ccccCCCceEEEEecCceeEeeeeeeCCceEEEecc--CCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 679998887776555444445565433 3333343 34589999999999887765433 3566787643
No 426
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.19 E-value=0.021 Score=54.78 Aligned_cols=54 Identities=11% Similarity=0.132 Sum_probs=34.8
Q ss_pred CeEEEEEcC--CCcEEEEeec-----CCCeEEEEEECC---CCCEEEEccCCCcEEEEEecccc
Q 040361 156 NSFQVIALN--DGRVVQSIRQ-----HRDVVSCVAVTT---DGSILATGSYDTTVMVWEVIRAR 209 (413)
Q Consensus 156 ~~i~i~~~~--~~~~~~~~~~-----h~~~v~~~~~~~---~~~~l~s~s~dg~i~iw~~~~~~ 209 (413)
|.+.||++. .|+....+.- -...+.-+.|.| +..++..+-.++.+++..+.+..
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~ 216 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRAL 216 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHH
Confidence 567888875 4554433322 233445566655 66778888889999998886654
No 427
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.06 E-value=0.0034 Score=55.79 Aligned_cols=144 Identities=16% Similarity=0.149 Sum_probs=102.0
Q ss_pred EEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEE-EECCCCeEEEEEeCCceeeee--
Q 040361 245 TCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVL-YGDDDLSLHLFSINGKHLASS-- 321 (413)
Q Consensus 245 ~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~-- 321 (413)
-...|-+.+.-++.++.+-.+..||- .++.......+ .....++|+.++..++ .+-..+.+++||++.+.-...
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~-agq~~le~n~t--g~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~ 114 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDK-AGQVILELNPT--GKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLES 114 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhh-hcceecccCCc--hhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhc
Confidence 34567777777888888999999985 44444444433 2456678888776554 456678999999984332221
Q ss_pred ecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEccCCeEEEEcCCCeEEE
Q 040361 322 ESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFLAGTKDGCLLV 391 (413)
Q Consensus 322 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~dg~i~v 391 (413)
+....-.-+.|++.+..++.|...|.+.||+..+.+.+...-.|...++++++.+.++.+.++.|..+.+
T Consensus 115 gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dcd~~L~v 184 (615)
T KOG2247|consen 115 GGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDCDNTLSV 184 (615)
T ss_pred cCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCcHHHHHH
Confidence 1122222278999999999999999999999988776665555889999999999988777777665443
No 428
>PHA02790 Kelch-like protein; Provisional
Probab=95.02 E-value=3.2 Score=39.10 Aligned_cols=140 Identities=11% Similarity=0.036 Sum_probs=69.6
Q ss_pred cCCCEEEEeeCC--CcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCC---eEEEEEeCCceeeeee---
Q 040361 251 VELDIVISGSKD--GTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDL---SLHLFSINGKHLASSE--- 322 (413)
Q Consensus 251 ~~~~~l~s~~~d--g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~--- 322 (413)
-++.+.+.|+.+ ..+..||..+.+-...-..+.. .....+..-++++.+.|+.++ .+..||.+...-....
T Consensus 317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~-r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~ 395 (480)
T PHA02790 317 ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKP-RCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTY 395 (480)
T ss_pred ECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCC-CcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCC
Confidence 356677777754 3577888765543221111111 111122334677778877553 4678888754333211
Q ss_pred cCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCce--EEEecCCCCcEEEEEEccCCe-EEEEcCC-----CeEEEEEe
Q 040361 323 SNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEV--VRRYSGVGKIITSLAVTPEEC-FLAGTKD-----GCLLVYSI 394 (413)
Q Consensus 323 ~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~-~l~~~~d-----g~i~vw~~ 394 (413)
....-.++ ..-+|+..+.|+ .+.+||..+.+- +..+....... +++.. +++ ++.||.+ ..+..||.
T Consensus 396 ~~r~~~~~-~~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~~~-~~~v~-~~~IYviGG~~~~~~~~~ve~Yd~ 469 (480)
T PHA02790 396 YPHYKSCA-LVFGRRLFLVGR---NAEFYCESSNTWTLIDDPIYPRDNP-ELIIV-DNKLLLIGGFYRGSYIDTIEVYNN 469 (480)
T ss_pred CccccceE-EEECCEEEEECC---ceEEecCCCCcEeEcCCCCCCcccc-EEEEE-CCEEEEECCcCCCcccceEEEEEC
Confidence 11111122 223666666664 467888876543 22222222222 33333 445 4457654 35777777
Q ss_pred cCC
Q 040361 395 ENR 397 (413)
Q Consensus 395 ~~~ 397 (413)
++.
T Consensus 470 ~~~ 472 (480)
T PHA02790 470 RTY 472 (480)
T ss_pred CCC
Confidence 654
No 429
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.94 E-value=0.19 Score=41.45 Aligned_cols=63 Identities=19% Similarity=0.209 Sum_probs=40.7
Q ss_pred cCCCCEEEEeCCCCeEEEEECCCCceEEEe-------c-------CCCCcEEEEEEccCCeEEEEcCCCeEEEEEec
Q 040361 333 SACGQFLVCGGDQGQIVVRSMNSLEVVRRY-------S-------GVGKIITSLAVTPEECFLAGTKDGCLLVYSIE 395 (413)
Q Consensus 333 s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~-------~-------~~~~~v~~~~~~~~~~~l~~~~dg~i~vw~~~ 395 (413)
..++++|++-+.+|.+++||+.+++.+..- . .....|..+.++.+|.-++.-.+|..+.|+.+
T Consensus 19 ~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~ 95 (219)
T PF07569_consen 19 ECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPD 95 (219)
T ss_pred EeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccc
Confidence 346777777778888888888776554221 1 23456777788877765554455667777654
No 430
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.90 E-value=0.73 Score=45.16 Aligned_cols=75 Identities=20% Similarity=0.264 Sum_probs=52.0
Q ss_pred CceeEEEecCCCCEEEEeCCCCeEEEEECC----------CCce--E-EEe--------cCCCCcEEEEEEccC----Ce
Q 040361 325 GRLNCLELSACGQFLVCGGDQGQIVVRSMN----------SLEV--V-RRY--------SGVGKIITSLAVTPE----EC 379 (413)
Q Consensus 325 ~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~----------~~~~--~-~~~--------~~~~~~v~~~~~~~~----~~ 379 (413)
..|..+.++|+|++++..+..|.+.+ .+. .++. . +++ ..+...|..+.|+|. ..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~-~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVL-ELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEE-EeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 46889999999999999888764433 332 1111 1 122 123457999999997 35
Q ss_pred EEEEcCCCeEEEEEecCCccc
Q 040361 380 FLAGTKDGCLLVYSIENRRTS 400 (413)
Q Consensus 380 ~l~~~~dg~i~vw~~~~~~~~ 400 (413)
+++-..|+++++||+...+.+
T Consensus 164 l~vLtsdn~lR~y~~~~~~~p 184 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDPQHP 184 (717)
T ss_pred EEEEecCCEEEEEecCCCCCC
Confidence 777889999999999865433
No 431
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.67 E-value=0.18 Score=28.71 Aligned_cols=32 Identities=19% Similarity=0.280 Sum_probs=26.3
Q ss_pred CCeEEEEEecCC---CEEEEeeCCCcEEEEEccCC
Q 040361 242 DIITCLYVSVEL---DIVISGSKDGTCVFHTLREG 273 (413)
Q Consensus 242 ~~i~~~~~~~~~---~~l~s~~~dg~i~vwd~~~~ 273 (413)
+.|.++.|+|+. .+|+.+-..|.|.++|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 468899999744 48888888899999999853
No 432
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=94.57 E-value=0.14 Score=45.57 Aligned_cols=173 Identities=15% Similarity=0.127 Sum_probs=101.6
Q ss_pred EEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeec-CCCCeE-E
Q 040361 169 VQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCG-HDDIIT-C 246 (413)
Q Consensus 169 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~i~-~ 246 (413)
+..+..-...|..+-..|||+.|+.-+. ..+.++++.+.....+.+... . .+ ....|+ .
T Consensus 213 i~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~d---s---------------pg~~~~~Vte~ 273 (733)
T COG4590 213 IRLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDD---S---------------PGDSRHQVTEQ 273 (733)
T ss_pred hhhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhc---C---------------CCchHHHHHHH
Confidence 3334445567888889999999887665 678899987665222111000 0 00 000111 1
Q ss_pred EEEecCCCEEEEeeCCCcEEEE-EccCCe-----EEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeC-Cceee
Q 040361 247 LYVSVELDIVISGSKDGTCVFH-TLREGR-----YVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSIN-GKHLA 319 (413)
Q Consensus 247 ~~~~~~~~~l~s~~~dg~i~vw-d~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~ 319 (413)
+..-..+.-++.++.||.|.-| |.+.+. .++.++.. ..++..+.-..+.+-+++-+.+|++..+... .+.+.
T Consensus 274 l~lL~Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~-pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL 352 (733)
T COG4590 274 LYLLSGGFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLA-PAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLL 352 (733)
T ss_pred HHHHhCceeEEEEcCCCceeeeeeeecCCCCcceeeeccccC-cccceeeccccccceEEEEcCCCceeeeecccCccee
Confidence 1122345567788889988877 544322 12222222 2344444444456677888888888877655 33333
Q ss_pred eeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEe
Q 040361 320 SSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRY 362 (413)
Q Consensus 320 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~ 362 (413)
....-..+.-+++||.+.++++- ..|.++++.+++..+...+
T Consensus 353 ~~~~~~~~~~~~~Sp~~~~Ll~e-~~gki~~~~l~Nr~Peisw 394 (733)
T COG4590 353 FERAYQAPQLVAMSPNQAYLLSE-DQGKIRLAQLENRNPEISW 394 (733)
T ss_pred hhhhhcCcceeeeCcccchheee-cCCceEEEEecCCCCCccH
Confidence 33333466788999999998876 3467999988876554433
No 433
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.47 E-value=2.3 Score=34.80 Aligned_cols=91 Identities=11% Similarity=0.087 Sum_probs=64.2
Q ss_pred eeeEEEccCCcEEEE-ECCCCeEEEEEeC--Ccee------eeee-----cCCceeEEEecCCCCEEEEeCCCCeEEEEE
Q 040361 287 LSKLAASRHGRIVLY-GDDDLSLHLFSIN--GKHL------ASSE-----SNGRLNCLELSACGQFLVCGGDQGQIVVRS 352 (413)
Q Consensus 287 v~~~~~~~~~~~l~~-~~~d~~i~i~d~~--~~~~------~~~~-----~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d 352 (413)
-+.++|+.+.+.+.. -+.+-.|.-||.+ +..+ .... ..-..-.+++..+|++.++.-..++|...|
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~d 239 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVD 239 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEEC
Confidence 356888877666554 4556678778843 2211 1111 111234466677888888888889999999
Q ss_pred CCCCceEEEecCCCCcEEEEEEccC
Q 040361 353 MNSLEVVRRYSGVGKIITSLAVTPE 377 (413)
Q Consensus 353 ~~~~~~~~~~~~~~~~v~~~~~~~~ 377 (413)
..+|+.+.++.-....|++++|--.
T Consensus 240 p~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 240 PTTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred CCCCcEEEEEEcCCCceEEEEecCC
Confidence 9999999999988999999999854
No 434
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.34 E-value=3.1 Score=40.38 Aligned_cols=141 Identities=7% Similarity=0.076 Sum_probs=87.8
Q ss_pred CCEEEEeeCCCcEEEEEccCCeEEE------EEe---------------CCCCCceeeEEEcc--CCcEEEEECCCCeEE
Q 040361 253 LDIVISGSKDGTCVFHTLREGRYVR------SLC---------------HPSGSALSKLAASR--HGRIVLYGDDDLSLH 309 (413)
Q Consensus 253 ~~~l~s~~~dg~i~vwd~~~~~~~~------~~~---------------~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~ 309 (413)
.++++.|. .+.|.||+++...... .+. .+....|+.+.+.. +...|+++..||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 55666654 7889999976322211 110 00112345554443 456788999999999
Q ss_pred EEEeC--------C----c---------eeeeeecCCceeEEEec--CCCCEEEEeCCCCeEEEEECCCC--ceEE-Eec
Q 040361 310 LFSIN--------G----K---------HLASSESNGRLNCLELS--ACGQFLVCGGDQGQIVVRSMNSL--EVVR-RYS 363 (413)
Q Consensus 310 i~d~~--------~----~---------~~~~~~~~~~i~~~~~s--~~~~~l~~~~~dg~i~v~d~~~~--~~~~-~~~ 363 (413)
+|.++ . . ...........+.++++ ...++||+++....|.||-.... +... .-.
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~ 207 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSH 207 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccccc
Confidence 99762 1 0 01112344578889998 77889999998888888755432 1111 111
Q ss_pred CCCCcEEEEEEccCC-------eEEEEcCCCeEEEEEe
Q 040361 364 GVGKIITSLAVTPEE-------CFLAGTKDGCLLVYSI 394 (413)
Q Consensus 364 ~~~~~v~~~~~~~~~-------~~l~~~~dg~i~vw~~ 394 (413)
.+...|-+++|-++. .+++++-.|.+.+|++
T Consensus 208 ~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 208 QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 255678899998753 2345888999999888
No 435
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.16 E-value=0.32 Score=27.74 Aligned_cols=31 Identities=23% Similarity=0.439 Sum_probs=25.3
Q ss_pred CceeEEEecCCC---CEEEEeCCCCeEEEEECCC
Q 040361 325 GRLNCLELSACG---QFLVCGGDQGQIVVRSMNS 355 (413)
Q Consensus 325 ~~i~~~~~s~~~---~~l~~~~~dg~i~v~d~~~ 355 (413)
+.+.++.|+|+. ++|+.+-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 357889999754 5888888889999999985
No 436
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.10 E-value=0.16 Score=49.27 Aligned_cols=162 Identities=11% Similarity=0.047 Sum_probs=94.6
Q ss_pred eecCCCCeEEEEEec-CCCEEEEeeCCCcEEEEEcc--CCeEEE----EEeCCCCCceeeEEEcc---CCcEEEEECCCC
Q 040361 237 LCGHDDIITCLYVSV-ELDIVISGSKDGTCVFHTLR--EGRYVR----SLCHPSGSALSKLAASR---HGRIVLYGDDDL 306 (413)
Q Consensus 237 ~~~h~~~i~~~~~~~-~~~~l~s~~~dg~i~vwd~~--~~~~~~----~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~ 306 (413)
+++..+.+-.+.|-. +...+. ..-|.+.+||+. .|+... ....+.+..+.-+.|.| +..++.++..++
T Consensus 128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~ 205 (1283)
T KOG1916|consen 128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGG 205 (1283)
T ss_pred HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCC
Confidence 456667777777632 111122 334678899875 444322 23334455666677766 566777888888
Q ss_pred eEEEEEeCCceeee-eecCCceeE-----------EEecCCCCEEEEeCCCCeEEEEECC-----CCceEEEecCCCC-c
Q 040361 307 SLHLFSINGKHLAS-SESNGRLNC-----------LELSACGQFLVCGGDQGQIVVRSMN-----SLEVVRRYSGVGK-I 368 (413)
Q Consensus 307 ~i~i~d~~~~~~~~-~~~~~~i~~-----------~~~s~~~~~l~~~~~dg~i~v~d~~-----~~~~~~~~~~~~~-~ 368 (413)
.+++.+.+...... ..|...+.. -.+||||..++.+..||.++.|.+. ...+++.++.|.+ +
T Consensus 206 ~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p 285 (1283)
T KOG1916|consen 206 EIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHP 285 (1283)
T ss_pred ceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCC
Confidence 88887776322111 123333322 2479999999999999998888764 2345566676763 3
Q ss_pred EEEEEEccC-------C--e-EEEE-cCCCeEEEEEecCCccc
Q 040361 369 ITSLAVTPE-------E--C-FLAG-TKDGCLLVYSIENRRTS 400 (413)
Q Consensus 369 v~~~~~~~~-------~--~-~l~~-~~dg~i~vw~~~~~~~~ 400 (413)
-.|.-|+.. + . .+++ ..+..+++|....-+..
T Consensus 286 ~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 286 RVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred ceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 333224432 2 1 3343 34566899987665444
No 437
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.04 E-value=1 Score=45.92 Aligned_cols=144 Identities=12% Similarity=0.175 Sum_probs=89.6
Q ss_pred CCeEEEEEcCCCcEEEEeecCCCeEEEEEECC--------CCCEEEEccCCCcEEEEEeccccccccccccceeecCCCc
Q 040361 155 ENSFQVIALNDGRVVQSIRQHRDVVSCVAVTT--------DGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKD 226 (413)
Q Consensus 155 d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~--------~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 226 (413)
|+.+.+|+++++...+.+.+-+..|..|..-. .=++++.-+.--.|.++-+.-........
T Consensus 98 Dn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~----------- 166 (1311)
T KOG1900|consen 98 DNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELS----------- 166 (1311)
T ss_pred CCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccc-----------
Confidence 88999999999888888888777887777532 22344443344567777664433111000
Q ss_pred eeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEc----cCC---e-E----------------EEEEeCC
Q 040361 227 YVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTL----REG---R-Y----------------VRSLCHP 282 (413)
Q Consensus 227 ~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~----~~~---~-~----------------~~~~~~~ 282 (413)
+.. ....+.-....|.|+....+|+.+++| .||. +|.+ ..+ + + +-.+...
T Consensus 167 --~f~-~~~~i~~dg~~V~~I~~t~nGRIF~~G-~dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~ 240 (1311)
T KOG1900|consen 167 --IFN-TSFKISVDGVSVNCITYTENGRIFFAG-RDGN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGS 240 (1311)
T ss_pred --ccc-cceeeecCCceEEEEEeccCCcEEEee-cCCC--EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCC
Confidence 000 012222335578888877788877766 4564 4433 211 1 0 0111222
Q ss_pred CCCceeeEEEccCCcEEEEECCCCeEEEEEeCC
Q 040361 283 SGSALSKLAASRHGRIVLYGDDDLSLHLFSING 315 (413)
Q Consensus 283 ~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 315 (413)
+..+|..+++....+++.+-+..++|.+||+.+
T Consensus 241 ~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 241 SKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 345899999999999999999999999999974
No 438
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=94.04 E-value=1.8 Score=32.00 Aligned_cols=113 Identities=18% Similarity=0.160 Sum_probs=69.0
Q ss_pred EEEecCCCEEEEeeCCCcEEEEEccCC--------eEEEEEeCCCCCceeeEEEcc-----CCcEEEEECCCCeEEEEEe
Q 040361 247 LYVSVELDIVISGSKDGTCVFHTLREG--------RYVRSLCHPSGSALSKLAASR-----HGRIVLYGDDDLSLHLFSI 313 (413)
Q Consensus 247 ~~~~~~~~~l~s~~~dg~i~vwd~~~~--------~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~i~d~ 313 (413)
-.|......|+.++.-|+|.+++.... ..++.+.. +..|++++-.+ +...|+.|+.. .|..||+
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi--n~~italaaG~l~~~~~~D~LliGt~t-~llaYDV 80 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI--NQEITALAAGRLKPDDGRDCLLIGTQT-SLLAYDV 80 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEEC--CCceEEEEEEecCCCCCcCEEEEeccc-eEEEEEc
Confidence 345555557888888899999986532 23444544 33677776544 34567777654 7889999
Q ss_pred CCc-eeeeeecCCceeEEEecC---CCCEEEEeCCCCeEEEEECCCCceEEEe
Q 040361 314 NGK-HLASSESNGRLNCLELSA---CGQFLVCGGDQGQIVVRSMNSLEVVRRY 362 (413)
Q Consensus 314 ~~~-~~~~~~~~~~i~~~~~s~---~~~~l~~~~~dg~i~v~d~~~~~~~~~~ 362 (413)
... .+........++++.+-. ...-++..+.+..|.-||..-.+...+.
T Consensus 81 ~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 81 ENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred ccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence 843 333344556677776632 1233444445678888887655554443
No 439
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=93.98 E-value=0.9 Score=41.22 Aligned_cols=51 Identities=12% Similarity=-0.037 Sum_probs=42.4
Q ss_pred eeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCC
Q 040361 234 FHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSG 284 (413)
Q Consensus 234 ~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 284 (413)
...+......+.+++.+|.+++.++.+.-|+|.++|+.++..++.+++-.+
T Consensus 300 r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRd 350 (415)
T PF14655_consen 300 RFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRD 350 (415)
T ss_pred EEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCcc
Confidence 445556667789999999999999988889999999999999888876543
No 440
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=93.78 E-value=5 Score=36.30 Aligned_cols=146 Identities=18% Similarity=0.187 Sum_probs=83.0
Q ss_pred EEEEeeCCCcEEEEEccCCeEEEEEeCCC-CCceeeEEEccCCcEEEEECCCCeEEEEEe-CCceeeeeecCC--ceeEE
Q 040361 255 IVISGSKDGTCVFHTLREGRYVRSLCHPS-GSALSKLAASRHGRIVLYGDDDLSLHLFSI-NGKHLASSESNG--RLNCL 330 (413)
Q Consensus 255 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~--~i~~~ 330 (413)
.+..+..+|.|.-.|..+++.+....... ...+..-.+..+|+ +++++.++.++.+|. ++...-...... .+..-
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~ 148 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASP 148 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecC
Confidence 44555778888888888888766444321 11222222223555 778888889999999 477666654444 11111
Q ss_pred EecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCC---CcEEEEEEccCCeEEEEcC--CCeEEEEEecCCccccc
Q 040361 331 ELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVG---KIITSLAVTPEECFLAGTK--DGCLLVYSIENRRTSLP 402 (413)
Q Consensus 331 ~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~--dg~i~vw~~~~~~~~~~ 402 (413)
.+-.++ .+..++.+|.+.-.|..+++......... ..+..-....++.++.+.. ++.+.-.++.++.....
T Consensus 149 ~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~ 224 (370)
T COG1520 149 PVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTLKWS 224 (370)
T ss_pred cEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCcEeee
Confidence 222233 34444478899999999888876644221 1111111133455555555 56666677766655544
No 441
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.69 E-value=1.3 Score=40.62 Aligned_cols=75 Identities=16% Similarity=0.191 Sum_probs=51.0
Q ss_pred ceeEEEecCCCCEEEEeCCCCeEEEEE---------CCCCceEE---Eec--------CCCCcEEEEEEccCC----eEE
Q 040361 326 RLNCLELSACGQFLVCGGDQGQIVVRS---------MNSLEVVR---RYS--------GVGKIITSLAVTPEE----CFL 381 (413)
Q Consensus 326 ~i~~~~~s~~~~~l~~~~~dg~i~v~d---------~~~~~~~~---~~~--------~~~~~v~~~~~~~~~----~~l 381 (413)
.|..+..++.|..++..+.+|.+.++= +.+++.+. ++. ...-.+..++|+|+. .++
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 467788899999999999998665542 22343321 111 112246778899974 566
Q ss_pred EEcCCCeEEEEEecCCccc
Q 040361 382 AGTKDGCLLVYSIENRRTS 400 (413)
Q Consensus 382 ~~~~dg~i~vw~~~~~~~~ 400 (413)
.-+.|..|++|++.+.+..
T Consensus 185 iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred EEecCcEEEEEecCCcchh
Confidence 7889999999999876543
No 442
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=93.54 E-value=3.1 Score=41.37 Aligned_cols=111 Identities=15% Similarity=0.167 Sum_probs=70.7
Q ss_pred CCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCc-------eeeEEEc----------------cCCcEEEEECCCCeEE
Q 040361 253 LDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSA-------LSKLAAS----------------RHGRIVLYGDDDLSLH 309 (413)
Q Consensus 253 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~-------v~~~~~~----------------~~~~~l~~~~~d~~i~ 309 (413)
+..+..++.++.|.-.|..+|+.+.++....... .+.+++. ..+..++.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 4567777888999999999999988876432110 1222221 1344788888899999
Q ss_pred EEEeC-CceeeeeecCCcee-------------EEEecC--CCCEEEEeCC----------CCeEEEEECCCCceEEEec
Q 040361 310 LFSIN-GKHLASSESNGRLN-------------CLELSA--CGQFLVCGGD----------QGQIVVRSMNSLEVVRRYS 363 (413)
Q Consensus 310 i~d~~-~~~~~~~~~~~~i~-------------~~~~s~--~~~~l~~~~~----------dg~i~v~d~~~~~~~~~~~ 363 (413)
-.|.+ |+.+.....++.+. .+.-.| .+..+++|+. +|.|+-+|.++|+++..+.
T Consensus 274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD 353 (764)
T ss_pred EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence 99987 66655443333221 111112 1345666632 6899999999999987764
No 443
>PRK13684 Ycf48-like protein; Provisional
Probab=93.49 E-value=5.3 Score=35.57 Aligned_cols=111 Identities=21% Similarity=0.211 Sum_probs=67.3
Q ss_pred CCceeeEEEccCCcEEEEECCCCeEEE-EEeCCceee--eeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEE
Q 040361 284 GSALSKLAASRHGRIVLYGDDDLSLHL-FSINGKHLA--SSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVR 360 (413)
Q Consensus 284 ~~~v~~~~~~~~~~~l~~~~~d~~i~i-~d~~~~~~~--~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~ 360 (413)
...+..+.+.+++.+++++.. |.+.. +|-.++.-. .......++.+.+.++++.+++| ..|.+++=....+..-.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~-G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~ 249 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSR-GNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWS 249 (334)
T ss_pred cceEEEEEECCCCeEEEEeCC-ceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccc
Confidence 346788899998877666554 44432 232232222 22345678999999999887776 45766532344444332
Q ss_pred EecC----CCCcEEEEEEccCCeEEEEcCCCeEEEEEecCC
Q 040361 361 RYSG----VGKIITSLAVTPEECFLAGTKDGCLLVYSIENR 397 (413)
Q Consensus 361 ~~~~----~~~~v~~~~~~~~~~~l~~~~dg~i~vw~~~~~ 397 (413)
.... ....+.++.+.+++.+++++.+|.+.. ....+
T Consensus 250 ~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~~-S~d~G 289 (334)
T PRK13684 250 KPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLLV-SKDGG 289 (334)
T ss_pred cccCCccccccceeeEEEcCCCCEEEEcCCCeEEE-eCCCC
Confidence 2221 124578899999888888778886653 44433
No 444
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.29 E-value=0.01 Score=52.92 Aligned_cols=139 Identities=12% Similarity=0.053 Sum_probs=95.5
Q ss_pred CCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEE-eec
Q 040361 96 SGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQS-IRQ 174 (413)
Q Consensus 96 ~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~-~~~ 174 (413)
|.+.-++.++.+..+..++.... ..........++.++|.-+++.+++.+...+.+.+|++++....+. +.+
T Consensus 44 ~e~~nlavaca~tiv~~YD~agq-------~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg 116 (615)
T KOG2247|consen 44 PEGHNLAVACANTIVIYYDKAGQ-------VILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGG 116 (615)
T ss_pred cCCCceehhhhhhHHHhhhhhcc-------eecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccC
Confidence 34444777778888777643221 1222333677888888889999888888899999999975432211 111
Q ss_pred -CCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCC
Q 040361 175 -HRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVEL 253 (413)
Q Consensus 175 -h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~ 253 (413)
|.... +.|++....++.+-..|.+.+++..+.+ .+.....|...++++++.+.+
T Consensus 117 ~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR-----------------------~iiv~Gkh~RRgtq~av~lEd 171 (615)
T KOG2247|consen 117 TSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSR-----------------------RIIVMGKHQRRGTQIAVTLED 171 (615)
T ss_pred cchHHH--HhhccCCccccccccccceEEEeccchh-----------------------hhhhhcccccceeEEEecccc
Confidence 33333 7799988889999899999999987776 233344488999999998864
Q ss_pred CEEEEeeCCCcEEE
Q 040361 254 DIVISGSKDGTCVF 267 (413)
Q Consensus 254 ~~l~s~~~dg~i~v 267 (413)
+.+.++.|..+.+
T Consensus 172 -~vil~dcd~~L~v 184 (615)
T KOG2247|consen 172 -YVILCDCDNTLSV 184 (615)
T ss_pred -eeeecCcHHHHHH
Confidence 5666666665544
No 445
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=93.29 E-value=5.6 Score=35.27 Aligned_cols=155 Identities=17% Similarity=0.223 Sum_probs=93.8
Q ss_pred CCCeEEEEEecCCCEEEEeeCCCc------EEEEEccC--C--eEE-----EEEeCCCCC-------ceeeEEEccCCcE
Q 040361 241 DDIITCLYVSVELDIVISGSKDGT------CVFHTLRE--G--RYV-----RSLCHPSGS-------ALSKLAASRHGRI 298 (413)
Q Consensus 241 ~~~i~~~~~~~~~~~l~s~~~dg~------i~vwd~~~--~--~~~-----~~~~~~~~~-------~v~~~~~~~~~~~ 298 (413)
-+.+..+.+.+++..+++.+.+|. +...++.. + ..+ ..+....+. ..-++++.+++.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 356788999876667777777777 66555543 1 111 111122111 2346888778888
Q ss_pred EEEECCC------CeEEEEEeCCceeeee----------------ecCCceeEEEecCCCCEEEEeCC-----CC--e--
Q 040361 299 VLYGDDD------LSLHLFSINGKHLASS----------------ESNGRLNCLELSACGQFLVCGGD-----QG--Q-- 347 (413)
Q Consensus 299 l~~~~~d------~~i~i~d~~~~~~~~~----------------~~~~~i~~~~~s~~~~~l~~~~~-----dg--~-- 347 (413)
+++.-.+ ..|+.++.+|...... ..+....+++++|+|+.|+++.+ |+ .
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~ 178 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANP 178 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccc
Confidence 8888777 8899999875543221 23456889999999996665532 22 1
Q ss_pred -----EEE--EECCC-CceEEEe----cC-----CCCcEEEEEEccCCeEEE---E---cCCCeEEEEEec
Q 040361 348 -----IVV--RSMNS-LEVVRRY----SG-----VGKIITSLAVTPEECFLA---G---TKDGCLLVYSIE 395 (413)
Q Consensus 348 -----i~v--~d~~~-~~~~~~~----~~-----~~~~v~~~~~~~~~~~l~---~---~~dg~i~vw~~~ 395 (413)
+++ ||..+ ++....+ .. ....|..+.+.+++++++ . .....++++.+.
T Consensus 179 ~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~ 249 (326)
T PF13449_consen 179 DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD 249 (326)
T ss_pred ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence 444 45544 3233222 22 346789999999987775 2 123456666554
No 446
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.25 E-value=3.6 Score=33.02 Aligned_cols=66 Identities=15% Similarity=0.169 Sum_probs=36.3
Q ss_pred CCCEEEEeecCC-CeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEE-ccCCCcEEEEEecccc
Q 040361 144 SENFLITCGNWE-NSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILAT-GSYDTTVMVWEVIRAR 209 (413)
Q Consensus 144 ~~~~l~~~g~~d-~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s-~s~dg~i~iw~~~~~~ 209 (413)
+|..+..+|-.. ..|++||+.+|+.+..-.-....+..=-...-+.++.. .-.+|.-..+|.++-+
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~ 122 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLE 122 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhh
Confidence 455556666543 37999999999887655432222221111111233322 2356777788877665
No 447
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=93.15 E-value=0.68 Score=26.20 Aligned_cols=32 Identities=22% Similarity=0.297 Sum_probs=26.1
Q ss_pred CCCCEEEEeecCCCeEEEEEcCCCcEEEEeec
Q 040361 143 PSENFLITCGNWENSFQVIALNDGRVVQSIRQ 174 (413)
Q Consensus 143 ~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~ 174 (413)
|++++++++...++.|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 56777887776788999999999888877765
No 448
>PRK10115 protease 2; Provisional
Probab=93.12 E-value=9.9 Score=37.67 Aligned_cols=198 Identities=10% Similarity=0.024 Sum_probs=94.4
Q ss_pred EEEEecCCCCEEEEeecCC-----CeEEEEEcCCC--cEEEEeecCCCeEE-EEEECCCCCEEEEccC---CCcEEEEEe
Q 040361 137 FTTMQTPSENFLITCGNWE-----NSFQVIALNDG--RVVQSIRQHRDVVS-CVAVTTDGSILATGSY---DTTVMVWEV 205 (413)
Q Consensus 137 ~~~~~~~~~~~l~~~g~~d-----~~i~i~~~~~~--~~~~~~~~h~~~v~-~~~~~~~~~~l~s~s~---dg~i~iw~~ 205 (413)
..+.|.++++.++.+...+ ..|+.+++.++ +....++....... .+..+.|+++++..+. ++.+.+++.
T Consensus 175 ~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 175 PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 4588999999888875532 47888899887 33344443333333 3334447777665433 456788875
Q ss_pred ccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeC---CCcEEEEEccCCeEEEEEeCC
Q 040361 206 IRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSK---DGTCVFHTLREGRYVRSLCHP 282 (413)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~ 282 (413)
...... ....+..-.+....+. +..+.+++.... ...|...++........+..+
T Consensus 255 ~~~~~~---------------------~~~~~~~~~~~~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~ 312 (686)
T PRK10115 255 ELADAE---------------------PFVFLPRRKDHEYSLD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPP 312 (686)
T ss_pred cCCCCC---------------------ceEEEECCCCCEEEEE-eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECC
Confidence 332110 0111111111111111 222222222221 223444454421112233333
Q ss_pred -CCCceeeEEEccCCcEEEEECCCCeEEE--EEeCCceeeeee--cCCceeEEEec--CCCC-EEEEeC---CCCeEEEE
Q 040361 283 -SGSALSKLAASRHGRIVLYGDDDLSLHL--FSINGKHLASSE--SNGRLNCLELS--ACGQ-FLVCGG---DQGQIVVR 351 (413)
Q Consensus 283 -~~~~v~~~~~~~~~~~l~~~~~d~~i~i--~d~~~~~~~~~~--~~~~i~~~~~s--~~~~-~l~~~~---~dg~i~v~ 351 (413)
....+..+.+. .+.++++...++.-++ ++..+..+.... ....+..+.++ +++. ++++.+ .-+.++.+
T Consensus 313 ~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~ 391 (686)
T PRK10115 313 RENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTREVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFEL 391 (686)
T ss_pred CCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCCceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEE
Confidence 23367777776 3455566666665444 454444433322 12233333444 3433 443332 34688999
Q ss_pred ECCCCc
Q 040361 352 SMNSLE 357 (413)
Q Consensus 352 d~~~~~ 357 (413)
|+.+++
T Consensus 392 d~~~~~ 397 (686)
T PRK10115 392 DMDTGE 397 (686)
T ss_pred ECCCCc
Confidence 988764
No 449
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.90 E-value=0.93 Score=37.38 Aligned_cols=65 Identities=11% Similarity=0.137 Sum_probs=42.0
Q ss_pred EecCCCEEEEeeCCCcEEEEEccCCeEEEEE------eC-------CCCCceeeEEEccCCcEEEEECCCCeEEEEEeC
Q 040361 249 VSVELDIVISGSKDGTCVFHTLREGRYVRSL------CH-------PSGSALSKLAASRHGRIVLYGDDDLSLHLFSIN 314 (413)
Q Consensus 249 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~------~~-------~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~ 314 (413)
+..+++++++.+.+|.+++||+.+++.+..- -. .....|..+.++.+|.-+++-+ +|..+.|+.+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 4456788999999999999999988765432 00 1223456666666665554443 3556666654
No 450
>PRK13684 Ycf48-like protein; Provisional
Probab=92.74 E-value=6.9 Score=34.84 Aligned_cols=149 Identities=12% Similarity=0.054 Sum_probs=89.0
Q ss_pred CCCeEEEEEecCCCEEEEeeCCCcEEE-EEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeC-Ccee
Q 040361 241 DDIITCLYVSVELDIVISGSKDGTCVF-HTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSIN-GKHL 318 (413)
Q Consensus 241 ~~~i~~~~~~~~~~~l~s~~~dg~i~v-wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~ 318 (413)
...+.++.+.+++.+++.+ ..|.+.. +| ..++.-..........+..+.+.+++..++++. .|.+++=..+ +..-
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~-~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR-GGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEec-CCEEEEccCCCCCcc
Confidence 4567888898887665554 4665543 22 122322333334456788999999988777664 4655432233 2221
Q ss_pred eeee-----cCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEec---CCCCcEEEEEEccCCeEEEEcCCCeEE
Q 040361 319 ASSE-----SNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYS---GVGKIITSLAVTPEECFLAGTKDGCLL 390 (413)
Q Consensus 319 ~~~~-----~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~dg~i~ 390 (413)
.... ....+..+.+.+++..+++| .+|.+. .....++.-.... .-......+.|..+++.++.+..|.|.
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~il 326 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVLL 326 (334)
T ss_pred ccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceEE
Confidence 1111 22457788999988766655 566554 3444444433332 222357888888777888888889988
Q ss_pred EEEe
Q 040361 391 VYSI 394 (413)
Q Consensus 391 vw~~ 394 (413)
.|+-
T Consensus 327 ~~~~ 330 (334)
T PRK13684 327 RYVG 330 (334)
T ss_pred EecC
Confidence 7764
No 451
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=92.64 E-value=4.7 Score=32.69 Aligned_cols=125 Identities=13% Similarity=0.087 Sum_probs=65.8
Q ss_pred CEEEEeecCCCeEEEEEcC--CCcEEEEeecCCCeEEEEEECCCCCEEEEccCCC------cEEEE-Eeccccccccccc
Q 040361 146 NFLITCGNWENSFQVIALN--DGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDT------TVMVW-EVIRARAPEKRVR 216 (413)
Q Consensus 146 ~~l~~~g~~d~~i~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg------~i~iw-~~~~~~~~~~~~~ 216 (413)
+.|+++.. .+.|.+|++. ..+....+. --+.|..+.++..|++|+|--.+. .+++| +.+.......++.
T Consensus 29 d~Lfva~~-g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~ 106 (215)
T PF14761_consen 29 DALFVAAS-GCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR 106 (215)
T ss_pred ceEEEEcC-CCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE
Confidence 44444322 6789999987 344555555 348899999999999999864322 45554 2222211111221
Q ss_pred cceee----cCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCe
Q 040361 217 NMQIE----APRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGR 274 (413)
Q Consensus 217 ~~~~~----~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 274 (413)
-...+ .+........-.+..+. -...+.+++..|-..-|+.|+ ++.+.+|.+....
T Consensus 107 vRiaG~~v~~~~~~~~~~qleiiElP-l~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~ 166 (215)
T PF14761_consen 107 VRIAGHRVTPSFNESSKDQLEIIELP-LSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQT 166 (215)
T ss_pred EEEcccccccCCCCccccceEEEEec-CCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEE
Confidence 11111 11111000000111122 245678888888544455554 5678899875443
No 452
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.60 E-value=4.2 Score=32.68 Aligned_cols=105 Identities=11% Similarity=0.061 Sum_probs=60.6
Q ss_pred CCCEEEEeeCCC--cEEEEEccCCeEEEEEeCCCCCceeeEEEccCCc-EEEEECCCCeEEEEEeCC-ceeeeeecCCce
Q 040361 252 ELDIVISGSKDG--TCVFHTLREGRYVRSLCHPSGSALSKLAASRHGR-IVLYGDDDLSLHLFSING-KHLASSESNGRL 327 (413)
Q Consensus 252 ~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~i 327 (413)
++.++.+.+.-| .|++||+.+++.+.+..... ..+..=-...-+. +..-.-.+|.-..||.+. +.+.....++.=
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~-~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP-DTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCC-ccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcc
Confidence 456677766544 69999999999888766541 1111111111122 223344567777888763 333344444444
Q ss_pred eEEEecCCCCEEEEeCCCCeEEEEECCCCceE
Q 040361 328 NCLELSACGQFLVCGGDQGQIVVRSMNSLEVV 359 (413)
Q Consensus 328 ~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~ 359 (413)
..++ .|++-|+.++....++.-|..+....
T Consensus 134 WgLt--~d~~~LimsdGsatL~frdP~tfa~~ 163 (262)
T COG3823 134 WGLT--SDDKNLIMSDGSATLQFRDPKTFAEL 163 (262)
T ss_pred eeee--cCCcceEeeCCceEEEecCHHHhhhc
Confidence 4443 46766777777778888777665443
No 453
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.59 E-value=3 Score=41.05 Aligned_cols=25 Identities=8% Similarity=-0.012 Sum_probs=19.9
Q ss_pred CCeEEEEEecCCCEEEEeeCCCcEE
Q 040361 242 DIITCLYVSVELDIVISGSKDGTCV 266 (413)
Q Consensus 242 ~~i~~~~~~~~~~~l~s~~~dg~i~ 266 (413)
-.|..+.++++|.+++..|..|.+.
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V 109 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVV 109 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEE
Confidence 3688899999999999888766443
No 454
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=92.49 E-value=9.6 Score=35.89 Aligned_cols=132 Identities=14% Similarity=0.191 Sum_probs=67.2
Q ss_pred CCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCceeeeeecCCc----eeEEEecCCCC
Q 040361 262 DGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKHLASSESNGR----LNCLELSACGQ 337 (413)
Q Consensus 262 dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~----i~~~~~s~~~~ 337 (413)
.+...+.|. +|.....+..... ....+...++|.+++... ..++.+|+-|+.+........ -..+..-|+|+
T Consensus 127 ~~~~~~iD~-~G~Vrw~~~~~~~-~~~~~~~l~nG~ll~~~~--~~~~e~D~~G~v~~~~~l~~~~~~~HHD~~~l~nGn 202 (477)
T PF05935_consen 127 SSYTYLIDN-NGDVRWYLPLDSG-SDNSFKQLPNGNLLIGSG--NRLYEIDLLGKVIWEYDLPGGYYDFHHDIDELPNGN 202 (477)
T ss_dssp EEEEEEEET-TS-EEEEE-GGGT---SSEEE-TTS-EEEEEB--TEEEEE-TT--EEEEEE--TTEE-B-S-EEE-TTS-
T ss_pred CceEEEECC-CccEEEEEccCcc-ccceeeEcCCCCEEEecC--CceEEEcCCCCEEEeeecCCcccccccccEECCCCC
Confidence 445555664 4555544443221 112266778888887666 789999998887666544332 25677788999
Q ss_pred EEEEeCC-------------CCeEEEEECCCCceEEEec--CC----C---------------------CcEEEEEEcc-
Q 040361 338 FLVCGGD-------------QGQIVVRSMNSLEVVRRYS--GV----G---------------------KIITSLAVTP- 376 (413)
Q Consensus 338 ~l~~~~~-------------dg~i~v~d~~~~~~~~~~~--~~----~---------------------~~v~~~~~~~- 376 (413)
+|+.+.. ...|..+| .+|+.+..+. .| . -.++++.+.+
T Consensus 203 ~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~ 281 (477)
T PF05935_consen 203 LLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPS 281 (477)
T ss_dssp EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETT
T ss_pred EEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCC
Confidence 8887762 12355556 6666665432 11 0 1478999988
Q ss_pred CCeEEEEcC-CCeEEEEEecCCc
Q 040361 377 EECFLAGTK-DGCLLVYSIENRR 398 (413)
Q Consensus 377 ~~~~l~~~~-dg~i~vw~~~~~~ 398 (413)
++.++..+. -..|...|.++++
T Consensus 282 dd~iivSsR~~s~V~~Id~~t~~ 304 (477)
T PF05935_consen 282 DDSIIVSSRHQSAVIKIDYRTGK 304 (477)
T ss_dssp TTEEEEEETTT-EEEEEE-TTS-
T ss_pred CCeEEEEcCcceEEEEEECCCCc
Confidence 567776554 3466666755554
No 455
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.45 E-value=3.7 Score=37.08 Aligned_cols=140 Identities=10% Similarity=0.048 Sum_probs=79.9
Q ss_pred EEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEe
Q 040361 180 SCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISG 259 (413)
Q Consensus 180 ~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~ 259 (413)
+.+-|. |.+..+.+...|.+.-|.+...... + ++..-....++|.++.|++|.+.++.-
T Consensus 26 ngvFfD-DaNkqlfavrSggatgvvvkgpndD---------------V-----piSfdm~d~G~I~SIkFSlDnkilAVQ 84 (657)
T KOG2377|consen 26 NGVFFD-DANKQLFAVRSGGATGVVVKGPNDD---------------V-----PISFDMDDKGEIKSIKFSLDNKILAVQ 84 (657)
T ss_pred cceeec-cCcceEEEEecCCeeEEEEeCCCCC---------------C-----CceeeecCCCceeEEEeccCcceEEEE
Confidence 345454 4444444445566667766544310 0 222223456799999999999999999
Q ss_pred eCCCcEEEEEccCCeEEEE--EeCCCC-CceeeEEEccCCcEEEEECCCCeEEEEEeC--Cceeee-eecCCceeEEEec
Q 040361 260 SKDGTCVFHTLREGRYVRS--LCHPSG-SALSKLAASRHGRIVLYGDDDLSLHLFSIN--GKHLAS-SESNGRLNCLELS 333 (413)
Q Consensus 260 ~~dg~i~vwd~~~~~~~~~--~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~-~~~~~~i~~~~~s 333 (413)
-.+..|.+.+..-.+.... .+...+ ..|....|+.+....+.... -+.+|... .+.+.. ..+...|.-..|+
T Consensus 85 R~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e~A~i~~~--G~e~y~v~pekrslRlVks~~~nvnWy~yc 162 (657)
T KOG2377|consen 85 RTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTEIAFITDQ--GIEFYQVLPEKRSLRLVKSHNLNVNWYMYC 162 (657)
T ss_pred ecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCeeEEEEecC--CeEEEEEchhhhhhhhhhhcccCccEEEEc
Confidence 9999999998743332221 121112 34788888877444333332 24455443 222222 3456667777777
Q ss_pred CCCCEEEEe
Q 040361 334 ACGQFLVCG 342 (413)
Q Consensus 334 ~~~~~l~~~ 342 (413)
++-+.++.+
T Consensus 163 ~et~v~LL~ 171 (657)
T KOG2377|consen 163 PETAVILLS 171 (657)
T ss_pred cccceEeee
Confidence 776654443
No 456
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=92.44 E-value=0.86 Score=25.76 Aligned_cols=40 Identities=18% Similarity=0.134 Sum_probs=28.2
Q ss_pred CCCCEEEEeC-CCCeEEEEECCCCceEEEecCCCCcEEEEEE
Q 040361 334 ACGQFLVCGG-DQGQIVVRSMNSLEVVRRYSGVGKIITSLAV 374 (413)
Q Consensus 334 ~~~~~l~~~~-~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~ 374 (413)
|++++|+++. .++.|.++|..+++.+..+.. ......+.|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEe
Confidence 5677666654 578999999999988888775 333445554
No 457
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=92.01 E-value=8.5 Score=34.22 Aligned_cols=66 Identities=17% Similarity=0.242 Sum_probs=39.8
Q ss_pred CceeEEEecC-------CCCEEEEeCCCCeEEEEECCCCceE---EE-ecCCCCcEEEEEEccCCeEE-EEcCCCeEE
Q 040361 325 GRLNCLELSA-------CGQFLVCGGDQGQIVVRSMNSLEVV---RR-YSGVGKIITSLAVTPEECFL-AGTKDGCLL 390 (413)
Q Consensus 325 ~~i~~~~~s~-------~~~~l~~~~~dg~i~v~d~~~~~~~---~~-~~~~~~~v~~~~~~~~~~~l-~~~~dg~i~ 390 (413)
..+..+.|-. .|.++++.-..+.|...++.....+ .. +......+..+++.|||.+. +...+|.|+
T Consensus 253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 3455566553 3556777766778888887644322 22 22344579999999998766 455678764
No 458
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.98 E-value=6.9 Score=35.47 Aligned_cols=148 Identities=9% Similarity=0.086 Sum_probs=88.6
Q ss_pred EEEEecCCCEEEEeeCCCcEEEEEcc--CCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCceeee---
Q 040361 246 CLYVSVELDIVISGSKDGTCVFHTLR--EGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKHLAS--- 320 (413)
Q Consensus 246 ~~~~~~~~~~l~s~~~dg~i~vwd~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~--- 320 (413)
.+-|. |.+..+.+...|.+.-|-.. +....-++.....++|.++.|++|.+.+++--.+..|.+++..+.....
T Consensus 27 gvFfD-DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~ 105 (657)
T KOG2377|consen 27 GVFFD-DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYT 105 (657)
T ss_pred ceeec-cCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHH
Confidence 34343 33444444445556666543 2223334444445689999999999999999999999999985332211
Q ss_pred ---eecCCceeEEEecCCCCEEEEeCCCCeEEEEECCC-CceEEEecCCCCcEEEEEEccCCeEE--EEc-CCCeEEEEE
Q 040361 321 ---SESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNS-LEVVRRYSGVGKIITSLAVTPEECFL--AGT-KDGCLLVYS 393 (413)
Q Consensus 321 ---~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l--~~~-~dg~i~vw~ 393 (413)
......|....|+.+. -+|.-...| +.+|.... .+.++..+.|.-.|.-..|.++.+++ +.+ ..+++.=+.
T Consensus 106 ~~ck~k~~~IlGF~W~~s~-e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~ 183 (657)
T KOG2377|consen 106 QECKTKNANILGFCWTSST-EIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFH 183 (657)
T ss_pred HHhccCcceeEEEEEecCe-eEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEE
Confidence 1233458888888664 444444333 55665443 23344556678889999999985433 433 344444444
Q ss_pred ecC
Q 040361 394 IEN 396 (413)
Q Consensus 394 ~~~ 396 (413)
+++
T Consensus 184 ~~~ 186 (657)
T KOG2377|consen 184 FRA 186 (657)
T ss_pred Eee
Confidence 443
No 459
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=91.87 E-value=9.8 Score=34.68 Aligned_cols=143 Identities=14% Similarity=0.122 Sum_probs=85.8
Q ss_pred eEEEEEecCCCEEEEeeCCCcEE-EEEccCCeEE-EEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCc-----
Q 040361 244 ITCLYVSVELDIVISGSKDGTCV-FHTLREGRYV-RSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGK----- 316 (413)
Q Consensus 244 i~~~~~~~~~~~l~s~~~dg~i~-vwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~----- 316 (413)
...+..++++.+++.+. .|.+. -|| .+... .....+....+..+.+.+++..++++. .|.+..=+-.+.
T Consensus 241 f~~v~~~~dG~~~~vg~-~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~-~G~l~~S~d~G~~~~~~ 316 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSS-RGNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADGGLWLLTR-GGGLYVSKGTGLTEEDF 316 (398)
T ss_pred eeeEEEcCCCCEEEEEC-CccEEEecC--CCCcceEEecCCCccceeeeeEcCCCCEEEEeC-CceEEEecCCCCccccc
Confidence 44556677777666654 44433 344 33322 223334445788899999988887764 455543333332
Q ss_pred eeeeee---cCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEec---CCCCcEEEEEEccCCeEEEEcCCCeEE
Q 040361 317 HLASSE---SNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYS---GVGKIITSLAVTPEECFLAGTKDGCLL 390 (413)
Q Consensus 317 ~~~~~~---~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~dg~i~ 390 (413)
...... ....+..+.|.+++..+++| ..|.+... ...++.-.... .-......+.|.++++..+.+.+|.|.
T Consensus 317 ~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s-~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~il 394 (398)
T PLN00033 317 DFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRS-TDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVLL 394 (398)
T ss_pred ceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEe-CCCCcceeEccccCCCCcceeEEEEcCCCceEEEeCCcEEE
Confidence 222222 22358889999888777666 56665554 34444433322 234568899998888888888889887
Q ss_pred EE
Q 040361 391 VY 392 (413)
Q Consensus 391 vw 392 (413)
-|
T Consensus 395 ~~ 396 (398)
T PLN00033 395 RY 396 (398)
T ss_pred Ee
Confidence 65
No 460
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.86 E-value=5.9 Score=40.81 Aligned_cols=74 Identities=18% Similarity=0.246 Sum_probs=37.5
Q ss_pred CceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEccCCe-EEEEcCCCeEEEEEecCCcccccc
Q 040361 325 GRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEEC-FLAGTKDGCLLVYSIENRRTSLPR 403 (413)
Q Consensus 325 ~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~dg~i~vw~~~~~~~~~~~ 403 (413)
..+.+..+......+ .+...+.+-+|+.........+..... .+++++. ++++..||.+.+||+..++.+..+
T Consensus 199 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~v~~h~Dgs~~fWd~s~g~~~~~~ 272 (993)
T KOG1983|consen 199 YESLQVLYYSPTKIL-IGFNRGLVVIKDRASKYVQSAYLPNGQ-----LESRDGSHFVSYHTDGSYAFWDVSSGKLQIAR 272 (993)
T ss_pred cccceeeeecCCCcc-eeeeeeeeeehhcccccchhhcccccc-----cCccCCceEEEEEecCCEEeeecCCCceeecC
Confidence 344444443333332 233344555665544333333322111 1166654 446888999999998887654443
Q ss_pred c
Q 040361 404 N 404 (413)
Q Consensus 404 ~ 404 (413)
.
T Consensus 273 ~ 273 (993)
T KOG1983|consen 273 N 273 (993)
T ss_pred c
Confidence 3
No 461
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=91.80 E-value=7.1 Score=32.92 Aligned_cols=240 Identities=12% Similarity=0.031 Sum_probs=139.7
Q ss_pred cceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccc
Q 040361 133 GSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPE 212 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~ 212 (413)
+...+.++-.++|...+. +...+.|--.|-.+|+....--+....-..|..-|||..-++-+.. -|.-.|-++.....
T Consensus 61 G~ap~dvapapdG~VWft-~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~ 138 (353)
T COG4257 61 GSAPFDVAPAPDGAVWFT-AQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTR 138 (353)
T ss_pred CCCccccccCCCCceEEe-cCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEE
Confidence 344556666778877665 4446777778888888776655555555667777887665554333 34434443333100
Q ss_pred cccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEE
Q 040361 213 KRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAA 292 (413)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~ 292 (413)
-......-........|.+.|++-.++.. |.---.|- ....+..+..+.+...+.++.
T Consensus 139 --------------------f~lp~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdP-a~~~i~vfpaPqG~gpyGi~a 196 (353)
T COG4257 139 --------------------FPLPLEHADANLETAVFDPWGNLWFTGQI-GAYGRLDP-ARNVISVFPAPQGGGPYGICA 196 (353)
T ss_pred --------------------eecccccCCCcccceeeCCCccEEEeecc-ccceecCc-ccCceeeeccCCCCCCcceEE
Confidence 00112223456778889999988887752 21111121 223455565666677889999
Q ss_pred ccCCcEEEEECCCCeEEEEEeCCceeeee----ecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceE-EEecCCCC
Q 040361 293 SRHGRIVLYGDDDLSLHLFSINGKHLASS----ESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVV-RRYSGVGK 367 (413)
Q Consensus 293 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~----~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~-~~~~~~~~ 367 (413)
.|+|...++.-.+..|-..|.....-... .....-..+--+|.|+.-++-...+.+.-||.....-. ..+.+...
T Consensus 197 tpdGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~a 276 (353)
T COG4257 197 TPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKA 276 (353)
T ss_pred CCCCcEEEEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCC
Confidence 99999998888888888888763221111 11233455666778888888777888888887654321 22333344
Q ss_pred cEEEEEEccCCeEE-EEcCCCeEEEEEecC
Q 040361 368 IITSLAVTPEECFL-AGTKDGCLLVYSIEN 396 (413)
Q Consensus 368 ~v~~~~~~~~~~~l-~~~~dg~i~vw~~~~ 396 (413)
.-.++.....+++- +-...|.|.-+|-++
T Consensus 277 rpys~rVD~~grVW~sea~agai~rfdpet 306 (353)
T COG4257 277 RPYSMRVDRHGRVWLSEADAGAIGRFDPET 306 (353)
T ss_pred CcceeeeccCCcEEeeccccCceeecCccc
Confidence 44555555444432 322334455555444
No 462
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=91.63 E-value=9.2 Score=33.84 Aligned_cols=94 Identities=9% Similarity=0.143 Sum_probs=46.7
Q ss_pred CCCEEEEeeC-----CCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCC----eEEEEEeCCceeeeee
Q 040361 252 ELDIVISGSK-----DGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDL----SLHLFSINGKHLASSE 322 (413)
Q Consensus 252 ~~~~l~s~~~-----dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~----~i~i~d~~~~~~~~~~ 322 (413)
++++.+.|+. ...+..||+.+.+-...-..+........+...++++.+.|+.++ .+..||++...-....
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~ 202 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVA 202 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECC
Confidence 4566666664 235778888766533221111111222233344677888887653 3567888754432221
Q ss_pred c----CCce---eEE-EecCCCCEEEEeCCC
Q 040361 323 S----NGRL---NCL-ELSACGQFLVCGGDQ 345 (413)
Q Consensus 323 ~----~~~i---~~~-~~s~~~~~l~~~~~d 345 (413)
. ..+. ... ....++++++.|+.+
T Consensus 203 ~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~ 233 (323)
T TIGR03548 203 DPTTDSEPISLLGAASIKINESLLLCIGGFN 233 (323)
T ss_pred CCCCCCCceeccceeEEEECCCEEEEECCcC
Confidence 1 1111 111 122356778888765
No 463
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.51 E-value=3.3 Score=38.14 Aligned_cols=26 Identities=15% Similarity=-0.017 Sum_probs=20.6
Q ss_pred CeEEEEEecCCCEEEEeeCCCcEEEE
Q 040361 243 IITCLYVSVELDIVISGSKDGTCVFH 268 (413)
Q Consensus 243 ~i~~~~~~~~~~~l~s~~~dg~i~vw 268 (413)
.|..+..++.|..++-++.+|.+.++
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMe 130 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVME 130 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEE
Confidence 46778889999999888888876554
No 464
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=91.18 E-value=4.8 Score=29.81 Aligned_cols=119 Identities=12% Similarity=0.120 Sum_probs=70.7
Q ss_pred EEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEec-----CCCE
Q 040361 181 CVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSV-----ELDI 255 (413)
Q Consensus 181 ~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~-----~~~~ 255 (413)
.-.|......|+.++.-|.|.|++.......... ....+..+ .-...|++++-.+ +...
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~---------------~~~~i~~L-Nin~~italaaG~l~~~~~~D~ 66 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGR---------------QDSDISFL-NINQEITALAAGRLKPDDGRDC 66 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCcccccccc---------------ccCceeEE-ECCCceEEEEEEecCCCCCcCE
Confidence 3456666667888888899999987655421110 00122333 2455677776443 3456
Q ss_pred EEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEcc---CCcEEEEECCCCeEEEEEeCCcee
Q 040361 256 VISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASR---HGRIVLYGDDDLSLHLFSINGKHL 318 (413)
Q Consensus 256 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~ 318 (413)
|+.|+ ...+..||+.+...+..-+.+ ..++++.+-. ...-++..+.+..|.-||.+|..+
T Consensus 67 LliGt-~t~llaYDV~~N~d~Fyke~~--DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~ 129 (136)
T PF14781_consen 67 LLIGT-QTSLLAYDVENNSDLFYKEVP--DGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEI 129 (136)
T ss_pred EEEec-cceEEEEEcccCchhhhhhCc--cceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEE
Confidence 77776 557889999876655443333 3577776643 223355555566788888776554
No 465
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=90.73 E-value=14 Score=34.24 Aligned_cols=31 Identities=13% Similarity=0.215 Sum_probs=24.9
Q ss_pred CceeEEEecCCCCEEEEeCCCCeEEEEECCC
Q 040361 325 GRLNCLELSACGQFLVCGGDQGQIVVRSMNS 355 (413)
Q Consensus 325 ~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~ 355 (413)
..|.++...+..+.+++.+.+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3488899988889999999999999999974
No 466
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.23 E-value=19 Score=35.05 Aligned_cols=55 Identities=7% Similarity=0.028 Sum_probs=39.5
Q ss_pred CCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCC
Q 040361 242 DIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHG 296 (413)
Q Consensus 242 ~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 296 (413)
+.+..+..||+.++|+--...|.|.+-+....+....+..........++|.-+.
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND 271 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC
Confidence 4567788899999999999999999988877777776664433344455554433
No 467
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=90.16 E-value=9.4 Score=32.84 Aligned_cols=55 Identities=5% Similarity=0.106 Sum_probs=41.2
Q ss_pred CCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEcc------CCCcEEEEEecccc
Q 040361 155 ENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGS------YDTTVMVWEVIRAR 209 (413)
Q Consensus 155 d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s------~dg~i~iw~~~~~~ 209 (413)
-..|.+||..+.+-...-.+-.+.|+.+.|..+.+.++.|. ....+..||+.+..
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~ 75 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT 75 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe
Confidence 34799999988776666566778999999986666666663 35568888887665
No 468
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=90.00 E-value=14 Score=33.21 Aligned_cols=198 Identities=18% Similarity=0.196 Sum_probs=109.2
Q ss_pred CCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEEC----CCCCE--EEEccC-C---CcEEEEEeccccccccc
Q 040361 145 ENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVT----TDGSI--LATGSY-D---TTVMVWEVIRARAPEKR 214 (413)
Q Consensus 145 ~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~----~~~~~--l~s~s~-d---g~i~iw~~~~~~~~~~~ 214 (413)
.+.++++...++-+.+||+ .|+.++.+.. +.++.+..- -+|+. |+.++. + .+|++|.+.........
T Consensus 67 ~kSlIigTdK~~GL~VYdL-~Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~ 143 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDL-DGKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTD 143 (381)
T ss_dssp GG-EEEEEETTTEEEEEET-TS-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE
T ss_pred ccceEEEEeCCCCEEEEcC-CCcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceE
Confidence 4556666667889999999 5677777642 333333321 13333 444442 2 46999998643210000
Q ss_pred cccceeecCCCceeeecCceeeeecCCCCeEEEEEe--c-CCC-EEEEeeCCCcEEEEEcc---CC----eEEEEEeCCC
Q 040361 215 VRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVS--V-ELD-IVISGSKDGTCVFHTLR---EG----RYVRSLCHPS 283 (413)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~--~-~~~-~l~s~~~dg~i~vwd~~---~~----~~~~~~~~~~ 283 (413)
+.. .-..+..-...+..+|+. + ++. +++....+|.+..|.+. .+ +.++++....
T Consensus 144 v~~---------------~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s 208 (381)
T PF02333_consen 144 VTD---------------PAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGS 208 (381)
T ss_dssp -CB---------------TTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS
T ss_pred cCC---------------CCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCC
Confidence 000 000011122345666664 3 344 56677788988888774 33 4678887643
Q ss_pred CCceeeEEEccCCcEEEEECCCCeEEEEEeCC---c--eee-ee---ecCCceeEEEec--CCC-CEEEEe-CCCCeEEE
Q 040361 284 GSALSKLAASRHGRIVLYGDDDLSLHLFSING---K--HLA-SS---ESNGRLNCLELS--ACG-QFLVCG-GDQGQIVV 350 (413)
Q Consensus 284 ~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~---~--~~~-~~---~~~~~i~~~~~s--~~~-~~l~~~-~~dg~i~v 350 (413)
.+..++.......|+.+-.+.-|.-|+.+. . .+. .. .....+..+++- .++ .||+++ -.+++..|
T Consensus 209 --Q~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~V 286 (381)
T PF02333_consen 209 --QPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAV 286 (381)
T ss_dssp ---EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEE
T ss_pred --cceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEE
Confidence 789999999889999999998888887761 1 111 11 133467777764 343 355544 45778999
Q ss_pred EECCC-CceEEEe
Q 040361 351 RSMNS-LEVVRRY 362 (413)
Q Consensus 351 ~d~~~-~~~~~~~ 362 (413)
|+... ...+..|
T Consensus 287 y~r~~~~~~~g~f 299 (381)
T PF02333_consen 287 YDREGPNAYVGSF 299 (381)
T ss_dssp EESSTT--EEEEE
T ss_pred EecCCCCcccceE
Confidence 99875 3444444
No 469
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=89.99 E-value=4.1 Score=39.30 Aligned_cols=70 Identities=14% Similarity=0.238 Sum_probs=47.1
Q ss_pred CCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeE--EEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCC
Q 040361 240 HDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRY--VRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSING 315 (413)
Q Consensus 240 h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 315 (413)
....++++.-+|.+..++.+..||.|++|+....+. +..... +-..+.|...| +++...|..+.-|.-+|
T Consensus 13 ~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~~----p~~nlv~tnhg--l~~~tsdrr~la~~~dg 84 (1636)
T KOG3616|consen 13 EDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEAK----PKENLVFTNHG--LVTATSDRRALAWKEDG 84 (1636)
T ss_pred ccceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhcC----Cccceeeeccc--eEEEeccchhheeeccC
Confidence 344567888889999999999999999999765543 333222 23445555544 55566666676776654
No 470
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=89.84 E-value=2.1 Score=38.60 Aligned_cols=165 Identities=13% Similarity=0.131 Sum_probs=97.4
Q ss_pred eeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEE-EEEeCC-CC---Ccee-eEEEccCCcEEEEECCCCeE
Q 040361 235 HILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYV-RSLCHP-SG---SALS-KLAASRHGRIVLYGDDDLSL 308 (413)
Q Consensus 235 ~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~-~~---~~v~-~~~~~~~~~~l~~~~~d~~i 308 (413)
..+..-...+..+-..||++.+..-+. ..+.++++.+.... +.+... .+ ..|. .+..-..|.-+++++.||.|
T Consensus 214 ~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~v 292 (733)
T COG4590 214 RLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLV 292 (733)
T ss_pred hhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCce
Confidence 334455567788889999997776554 67888888654432 222111 11 1222 22223356678888889888
Q ss_pred EEE-EeC-Cce--eee---ee-cCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEccCCeE
Q 040361 309 HLF-SIN-GKH--LAS---SE-SNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECF 380 (413)
Q Consensus 309 ~i~-d~~-~~~--~~~---~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 380 (413)
.-| |.+ +.. +.. .. ....+..+.-..+.+-+++-+.+|++.++.....+.+-. +.--..+.-+++||.+.+
T Consensus 293 sQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~-~~~~~~~~~~~~Sp~~~~ 371 (733)
T COG4590 293 SQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLF-ERAYQAPQLVAMSPNQAY 371 (733)
T ss_pred eeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceeh-hhhhcCcceeeeCcccch
Confidence 766 554 111 111 11 112233332223345677778888888876655444322 222235667899999888
Q ss_pred EEEcCCCeEEEEEecCCcccc
Q 040361 381 LAGTKDGCLLVYSIENRRTSL 401 (413)
Q Consensus 381 l~~~~dg~i~vw~~~~~~~~~ 401 (413)
+..-..|.++++.+++..+..
T Consensus 372 Ll~e~~gki~~~~l~Nr~Pei 392 (733)
T COG4590 372 LLSEDQGKIRLAQLENRNPEI 392 (733)
T ss_pred heeecCCceEEEEecCCCCCc
Confidence 877777899999999876553
No 471
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=89.80 E-value=15 Score=33.32 Aligned_cols=22 Identities=18% Similarity=0.288 Sum_probs=14.4
Q ss_pred CCCEEEEeecCCCeEEEEEcCC
Q 040361 144 SENFLITCGNWENSFQVIALND 165 (413)
Q Consensus 144 ~~~~l~~~g~~d~~i~i~~~~~ 165 (413)
++..+++.|..+..+.++|+..
T Consensus 38 ~~~iyv~gG~~~~~~~~~d~~~ 59 (376)
T PRK14131 38 NNTVYVGLGSAGTSWYKLDLNA 59 (376)
T ss_pred CCEEEEEeCCCCCeEEEEECCC
Confidence 5566666666556777888753
No 472
>KOG1786 consensus Lysosomal trafficking regulator LYST and related BEACH and WD40 repeat proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.75 E-value=0.21 Score=51.23 Aligned_cols=35 Identities=29% Similarity=0.274 Sum_probs=32.1
Q ss_pred CCCHHHHHHHHHHHHhcCCCcccccccCCCCCCCC
Q 040361 1 MEDELQKSAIEDQIANFGQTPSQIFRKKHPRRGPP 35 (413)
Q Consensus 1 i~d~~~r~~~~~~i~~fGq~P~qlf~~php~r~~~ 35 (413)
+.||.++.+++.++++|||+|.|+|.+||+.+...
T Consensus 595 ~~d~~~~~~~~~~~~~~~~~~~~l~~~~h~~~~~~ 629 (1081)
T KOG1786|consen 595 GYDPLEQNILIVSNNHFKQTIKQLFPKKHSVSELT 629 (1081)
T ss_pred ccchhhhhhhHHHhhccccchhhcccccccccccc
Confidence 46999999999999999999999999999998644
No 473
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=89.03 E-value=16 Score=32.44 Aligned_cols=151 Identities=15% Similarity=0.101 Sum_probs=86.9
Q ss_pred CCeEEEEEECCCCCEEEEccCCCc------EEEEEeccccccccccccceeecCCCceeeecCceeeeecC--------C
Q 040361 176 RDVVSCVAVTTDGSILATGSYDTT------VMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGH--------D 241 (413)
Q Consensus 176 ~~~v~~~~~~~~~~~l~s~s~dg~------i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--------~ 241 (413)
-+.+..+.+.+++..+++.+.+|. +...++.........+... ....+..- .
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~L~~~~G~~~~~~~ 84 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTIL--------------DMIPLRDPDGQPFPKNG 84 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEec--------------cceeccCCCCCcCCcCC
Confidence 466788899876666777777777 6555554421100000000 00111111 1
Q ss_pred CCeEEEEEecCCCEEEEeeCC------CcEEEEEccCCeEEEEEeC--------------CCCCceeeEEEccCCcEEEE
Q 040361 242 DIITCLYVSVELDIVISGSKD------GTCVFHTLREGRYVRSLCH--------------PSGSALSKLAASRHGRIVLY 301 (413)
Q Consensus 242 ~~i~~~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~--------------~~~~~v~~~~~~~~~~~l~~ 301 (413)
....+|++.+++.++++.-.+ ..|..++.. |+....+.. ..+...-+++++|+|+.|++
T Consensus 85 ~D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~ 163 (326)
T PF13449_consen 85 LDPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFA 163 (326)
T ss_pred CChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEE
Confidence 134477787788888877767 788888875 666555421 12346788999999996665
Q ss_pred ECC-----CC---------eEEEE--EeCC--ceeee----ee------cCCceeEEEecCCCCEEEE
Q 040361 302 GDD-----DL---------SLHLF--SING--KHLAS----SE------SNGRLNCLELSACGQFLVC 341 (413)
Q Consensus 302 ~~~-----d~---------~i~i~--d~~~--~~~~~----~~------~~~~i~~~~~s~~~~~l~~ 341 (413)
+.. |+ .++++ |... ..... .. ....+..+.+-+++++|+.
T Consensus 164 ~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 164 AMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred EECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 432 21 14554 4432 11111 11 3567888999999987775
No 474
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=88.85 E-value=19 Score=33.07 Aligned_cols=153 Identities=14% Similarity=0.136 Sum_probs=88.5
Q ss_pred CCCCEEEEeecCCCeEEEEEcCCCc-----EEEEeecCCCeEEEEEECC-----CCCEEEEccCCCcEEEEEeccccccc
Q 040361 143 PSENFLITCGNWENSFQVIALNDGR-----VVQSIRQHRDVVSCVAVTT-----DGSILATGSYDTTVMVWEVIRARAPE 212 (413)
Q Consensus 143 ~~~~~l~~~g~~d~~i~i~~~~~~~-----~~~~~~~h~~~v~~~~~~~-----~~~~l~s~s~dg~i~iw~~~~~~~~~ 212 (413)
+++...++.|+.+|.++||+...+. .+-+. .-..+|..+..-+ +...|+. -.-..+.+|.+.......
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~-~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~ 111 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLET-QLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTV 111 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCCCccEEEEE-ecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCc
Confidence 4455566668889999999985433 11111 2456787777642 2234444 345678888884332110
Q ss_pred cccccceeecCCCceeeecCceeeeecCCCC--eEEEEEec----C-CCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCC
Q 040361 213 KRVRNMQIEAPRKDYVIVETPFHILCGHDDI--ITCLYVSV----E-LDIVISGSKDGTCVFHTLREGRYVRSLCHPSGS 285 (413)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--i~~~~~~~----~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 285 (413)
.. +.. -.+..+..|.-. ...+++-| . ...+..=+.||.+.+++-+.....+.+.. -.
T Consensus 112 ~~----------g~~----~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~--~l 175 (418)
T PF14727_consen 112 EH----------GNQ----YQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD--FL 175 (418)
T ss_pred cc----------CcE----EEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC--CC
Confidence 00 000 012233333322 22233322 2 35788889999999999765544444432 22
Q ss_pred ceeeEEEccCCcEEEEECCCCeEEEEEe
Q 040361 286 ALSKLAASRHGRIVLYGDDDLSLHLFSI 313 (413)
Q Consensus 286 ~v~~~~~~~~~~~l~~~~~d~~i~i~d~ 313 (413)
-...+++.+....+++++.+..+..|..
T Consensus 176 lPgPl~Y~~~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 176 LPGPLCYCPRTDSFVTASSSWTLECYKY 203 (418)
T ss_pred CCcCeEEeecCCEEEEecCceeEEEecH
Confidence 3445788888888999998888888876
No 475
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=88.83 E-value=17 Score=32.53 Aligned_cols=52 Identities=4% Similarity=0.029 Sum_probs=24.3
Q ss_pred CcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCC------CeEEEEEeC
Q 040361 263 GTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDD------LSLHLFSIN 314 (413)
Q Consensus 263 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~i~d~~ 314 (413)
..+.+||..+.+-...-..+........+..-++++++.|+.+ ..+..|+++
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~ 225 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFT 225 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEec
Confidence 4577888776543322111111011112223466777777643 134556653
No 476
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=88.51 E-value=18 Score=32.57 Aligned_cols=178 Identities=13% Similarity=0.076 Sum_probs=95.3
Q ss_pred eEEEEEcCCCcEEEEeec--CCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCce
Q 040361 157 SFQVIALNDGRVVQSIRQ--HRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPF 234 (413)
Q Consensus 157 ~i~i~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (413)
.++|+|- ++.++..++| ...+|.++.|..|--+++|=-.-.-+.+.|+.+.+.+.- +. .
T Consensus 407 ~vYilDe-~lnvvGkltGl~~gERIYAvRf~gdv~yiVTfrqtDPlfviDlsNPenPkv-lG-----------------e 467 (603)
T COG4880 407 AVYILDE-NLNVVGKLTGLAPGERIYAVRFVGDVLYIVTFRQTDPLFVIDLSNPENPKV-LG-----------------E 467 (603)
T ss_pred eeEEEcC-CCcEEEEEeccCCCceEEEEEEeCceEEEEEEeccCceEEEEcCCCCCCce-eE-----------------E
Confidence 5666663 5677777776 567899999988877888876666788888887763211 00 0
Q ss_pred eeeecCCCCeEEEEEec--CCCEEEEeeCCCcEE--EEEccCCeEEE---EEeCCC-----CCceeeEEEccCCcEEE-E
Q 040361 235 HILCGHDDIITCLYVSV--ELDIVISGSKDGTCV--FHTLREGRYVR---SLCHPS-----GSALSKLAASRHGRIVL-Y 301 (413)
Q Consensus 235 ~~~~~h~~~i~~~~~~~--~~~~l~s~~~dg~i~--vwd~~~~~~~~---~~~~~~-----~~~v~~~~~~~~~~~l~-~ 301 (413)
..+.|... -++| ++..+-.|-.+|.++ ++|+......+ .+.... -..-....++|...+++ -
T Consensus 468 LKIPGfS~-----YLHpigen~~lGvG~~~g~vKiSLFdiSdl~~PkEv~~y~l~~~wspvf~dhHAFl~d~~~~ifFlP 542 (603)
T COG4880 468 LKIPGFSE-----YLHPIGENRLLGVGAYQGGVKISLFDISDLAAPKEVSNYTLSNAWSPVFYDHHAFLYDPEAEIFFLP 542 (603)
T ss_pred EecCCchh-----hccccCCCcEEEeecccCCceEEEEeccCCCCchhhhheehhhhcchhhhccceeecCCcccEEEec
Confidence 11122221 1334 445666777788655 67765433221 111000 00112234455444333 3
Q ss_pred ECCCCeEEEEEeCCceeeeeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEE
Q 040361 302 GDDDLSLHLFSINGKHLASSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRR 361 (413)
Q Consensus 302 ~~~d~~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~ 361 (413)
+...|.|..+....+......+...+...-|..|--|++.+. .+.++|-++.+.+.+
T Consensus 543 ay~~gyif~iedg~kl~k~~e~k~na~RA~fi~dylY~vg~~---ev~~ldenswe~Vge 599 (603)
T COG4880 543 AYLGGYIFFIEDGSKLRKRAERKLNADRAFFIKDYLYLVGGN---EVWKLDENSWEVVGE 599 (603)
T ss_pred ccCccEEEEEecCceeeehhhhcccceeeEEecceEEEeccc---eeEEeccchHhhhhh
Confidence 444555443333333333345666666666654444444332 577777777766544
No 477
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=88.50 E-value=21 Score=33.17 Aligned_cols=33 Identities=6% Similarity=-0.053 Sum_probs=24.9
Q ss_pred CCeEEEEEECCCCCEEEEccCCCcEEEEEeccc
Q 040361 176 RDVVSCVAVTTDGSILATGSYDTTVMVWEVIRA 208 (413)
Q Consensus 176 ~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~ 208 (413)
-...+.|+|.||+++|++--..|.|++++-.+.
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~ 61 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETG 61 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCC
Confidence 345678999999987777655699999875443
No 478
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.95 E-value=9.3 Score=39.52 Aligned_cols=69 Identities=16% Similarity=0.383 Sum_probs=48.4
Q ss_pred CCceeeEEEccCCcEEEEECCCCeEEEEEe--C------Cceee------------------ee-ecCCceeEEEecCCC
Q 040361 284 GSALSKLAASRHGRIVLYGDDDLSLHLFSI--N------GKHLA------------------SS-ESNGRLNCLELSACG 336 (413)
Q Consensus 284 ~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~--~------~~~~~------------------~~-~~~~~i~~~~~s~~~ 336 (413)
+..|+++....+|+++++|-.+ . +|.+ + +++.. .. .+..+|..+++....
T Consensus 178 g~~V~~I~~t~nGRIF~~G~dg-~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR 254 (1311)
T KOG1900|consen 178 GVSVNCITYTENGRIFFAGRDG-N--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR 254 (1311)
T ss_pred CceEEEEEeccCCcEEEeecCC-C--EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc
Confidence 5578888877788877766554 3 4433 1 11000 11 345689999998888
Q ss_pred CEEEEeCCCCeEEEEECCC
Q 040361 337 QFLVCGGDQGQIVVRSMNS 355 (413)
Q Consensus 337 ~~l~~~~~dg~i~v~d~~~ 355 (413)
..+.+-++.|.|.+||+..
T Consensus 255 ~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 255 NILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ceeeeeccCceEEEEEccC
Confidence 8999999999999999975
No 479
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=87.80 E-value=1.6 Score=41.92 Aligned_cols=94 Identities=11% Similarity=0.052 Sum_probs=46.4
Q ss_pred CCCCEEEEccCCCcEEEEEeccccccccccccceeecC-----CCceeeecCceeeeecCCCCeEEEEEec----CCCEE
Q 040361 186 TDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAP-----RKDYVIVETPFHILCGHDDIITCLYVSV----ELDIV 256 (413)
Q Consensus 186 ~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~h~~~i~~~~~~~----~~~~l 256 (413)
++...++.+..||.+....................... -..... .....-.........++++. +..++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 233 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFP--WSYRGDNSSSSVAASLAVSSSEINDDTFL 233 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS---TT---SSSS---EEEEEE-----ETTTEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCC--cccccCCCCCCccceEEEecceeCCCCEE
Confidence 46677888889999988887652200000000000000 000000 00000011123345555555 66799
Q ss_pred EEeeCCCcEEEEEccCCeEEEEEeC
Q 040361 257 ISGSKDGTCVFHTLREGRYVRSLCH 281 (413)
Q Consensus 257 ~s~~~dg~i~vwd~~~~~~~~~~~~ 281 (413)
++.+.|+++++||+.+++++.+...
T Consensus 234 ~tl~~D~~LRiW~l~t~~~~~~~~~ 258 (547)
T PF11715_consen 234 FTLSRDHTLRIWSLETGQCLATIDL 258 (547)
T ss_dssp EEEETTSEEEEEETTTTCEEEEEET
T ss_pred EEEeCCCeEEEEECCCCeEEEEecc
Confidence 9999999999999999999776543
No 480
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=87.68 E-value=18 Score=31.60 Aligned_cols=242 Identities=12% Similarity=0.058 Sum_probs=112.5
Q ss_pred CCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcE--------
Q 040361 97 GGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRV-------- 168 (413)
Q Consensus 97 ~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~-------- 168 (413)
++++++.|..+|.+.+.-..-. .. ...+-....+..+...+..+.|++-++....++.+++..-..
T Consensus 12 ~~~~lL~GTe~Gly~~~~~~~~-----~~-~~kl~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~ 85 (302)
T smart00036 12 DGKWLLVGTEEGLYVLNISDQP-----GT-LEKLIGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSA 85 (302)
T ss_pred CCcEEEEEeCCceEEEEcccCC-----CC-eEEecCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCc
Confidence 3467888888888877421100 01 111112345667777788887777675555699999832111
Q ss_pred -------EEEeecCCCeEEEEEECCCC-CEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecC
Q 040361 169 -------VQSIRQHRDVVSCVAVTTDG-SILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGH 240 (413)
Q Consensus 169 -------~~~~~~h~~~v~~~~~~~~~-~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 240 (413)
....-.|.......+..... ..++.+....+|.++............+... ..... -
T Consensus 86 ~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~--------------~~~~~-~ 150 (302)
T smart00036 86 RLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKF--------------LFPLI-S 150 (302)
T ss_pred cccccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccc--------------cccCC-C
Confidence 01111344333333333221 2233444456677765533311111110000 00000 1
Q ss_pred CCCeEEEEEecC--CCEEEEeeCCCcEEEEEccC--CeEE----EEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEE
Q 040361 241 DDIITCLYVSVE--LDIVISGSKDGTCVFHTLRE--GRYV----RSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFS 312 (413)
Q Consensus 241 ~~~i~~~~~~~~--~~~l~s~~~dg~i~vwd~~~--~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d 312 (413)
..++..+..+++ ...+..|+..+-..++++.. .... ............++..-+++.++++-. ....+.|
T Consensus 151 ~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l~~~e~Llc~~--~~~v~Vn 228 (302)
T smart00036 151 PVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQVPRDEFLLCYD--EFGVFVN 228 (302)
T ss_pred CccceEeeecccccceEEEEEEcCCCCeEEEEeecccccccccccccccccccCceEEEEECCCeEEEEEC--cEEEEEe
Confidence 122222222222 34566665542233444422 1100 000001010122233333445555443 3466677
Q ss_pred eCC-ceee--eeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecC
Q 040361 313 ING-KHLA--SSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSG 364 (413)
Q Consensus 313 ~~~-~~~~--~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~ 364 (413)
..| .... .......+.++++. ..++++-.. ..|.++++.+++.++++..
T Consensus 229 ~~G~~~~r~~~l~w~~~p~~~~~~--~pyll~~~~-~~ievr~l~~~~l~q~i~~ 280 (302)
T smart00036 229 LYGKRRSRNPILHWEFMPESFAYH--SPYLLAFHD-NGIEIRSIKTGELLQELAD 280 (302)
T ss_pred CCCCccccceEEEcCCcccEEEEE--CCEEEEEcC-CcEEEEECCCCceEEEEec
Confidence 777 3322 23455666777776 356666654 4599999999998888863
No 481
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=87.66 E-value=18 Score=31.41 Aligned_cols=180 Identities=10% Similarity=0.117 Sum_probs=93.4
Q ss_pred eEEEEEcCCCcEEEEeec------CCCeEEEEEECCCC-----CE-EEEccCCCcEEEEEeccccccccccccceeecCC
Q 040361 157 SFQVIALNDGRVVQSIRQ------HRDVVSCVAVTTDG-----SI-LATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPR 224 (413)
Q Consensus 157 ~i~i~~~~~~~~~~~~~~------h~~~v~~~~~~~~~-----~~-l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 224 (413)
.|.+||+.++++++.+.- ..+.+..+.+.... .+ .++=+..+-|.++|+.+++........+...+..
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 788899999999887753 24567777776522 22 3333445689999998876422211111111111
Q ss_pred CceeeecCceeeeecCCCCeEEEEEec---CCCEEEEeeCCCcEEEEEcc-----CCe---------EEEEEeCCCCCce
Q 040361 225 KDYVIVETPFHILCGHDDIITCLYVSV---ELDIVISGSKDGTCVFHTLR-----EGR---------YVRSLCHPSGSAL 287 (413)
Q Consensus 225 ~~~~~~~~~~~~~~~h~~~i~~~~~~~---~~~~l~s~~~dg~i~vwd~~-----~~~---------~~~~~~~~~~~~v 287 (413)
.... .... .+. ....+..++.+| +++.|.-....+. ++|.+. +.. .+..+. ..+...
T Consensus 115 ~~~~-i~g~--~~~-~~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T~~L~~~~~~~~~~~~~~v~~lG-~k~~~s 188 (287)
T PF03022_consen 115 GPFT-IGGE--SFQ-WPDGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPTSVLRDPSLSDAQALASQVQDLG-DKGSQS 188 (287)
T ss_dssp EEEE-ETTE--EEE-ETTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEHHHHCSTT--HHH-HHHT-EEEE-E---SE
T ss_pred ccee-ccCc--eEe-cCCCccccccCCCCCCccEEEEEeCCCC-cEEEEEHHHhhCccccccccccccceecc-ccCCCC
Confidence 1111 1111 122 223377777766 5555554443331 222221 110 112221 112355
Q ss_pred eeEEEccCCcEEEEECCCCeEEEEEeCCc----eeeee--e-c-CCceeEEEecC--CCCEEEEe
Q 040361 288 SKLAASRHGRIVLYGDDDLSLHLFSINGK----HLASS--E-S-NGRLNCLELSA--CGQFLVCG 342 (413)
Q Consensus 288 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~----~~~~~--~-~-~~~i~~~~~s~--~~~~l~~~ 342 (413)
..++++++|.++++--..+.|..|+..+. ..... . . -..+..+.+.+ +|.+.+..
T Consensus 189 ~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 189 DGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp CEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred ceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 67889999999999999999999999861 22221 1 1 24567888887 66555444
No 482
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=87.27 E-value=18 Score=31.00 Aligned_cols=186 Identities=8% Similarity=0.099 Sum_probs=0.0
Q ss_pred CEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCC
Q 040361 146 NFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRK 225 (413)
Q Consensus 146 ~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 225 (413)
+..+..+.++.-++|.|+.+......+..-.-.=..-.|.-.|++...+..|.-+.+.|+.+.+
T Consensus 96 e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdps---------------- 159 (370)
T COG5276 96 EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPS---------------- 159 (370)
T ss_pred ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCC----------------
Q ss_pred ceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCC-ceeeEEEccCCcEEEEECC
Q 040361 226 DYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGS-ALSKLAASRHGRIVLYGDD 304 (413)
Q Consensus 226 ~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~ 304 (413)
.......+......-..++.+ |++...+..|+-+.+-|+.+.....-+..-.-. .+.++..+++..+++....
T Consensus 160 ----sP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~e 233 (370)
T COG5276 160 ----SPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDE 233 (370)
T ss_pred ----CceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEccc
Q ss_pred CCeEEEEEeCCce----eeeeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCC
Q 040361 305 DLSLHLFSINGKH----LASSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNS 355 (413)
Q Consensus 305 d~~i~i~d~~~~~----~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~ 355 (413)
. +.+-|.++.. +-......++..-.+.-.+++......+.-+.+-|+.+
T Consensus 234 g--vlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisn 286 (370)
T COG5276 234 G--VLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISN 286 (370)
T ss_pred c--eEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccC
No 483
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=87.19 E-value=18 Score=31.09 Aligned_cols=97 Identities=11% Similarity=0.175 Sum_probs=59.5
Q ss_pred CCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEEC------CCCeEEEEEeCCceeeeee------cCCceeE
Q 040361 262 DGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGD------DDLSLHLFSINGKHLASSE------SNGRLNC 329 (413)
Q Consensus 262 dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~d~~i~i~d~~~~~~~~~~------~~~~i~~ 329 (413)
-..|.+||..+.+-..--.. -...|..+.|..+.++++.|. ....+..||.+........ ..+++..
T Consensus 15 C~~lC~yd~~~~qW~~~g~~-i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNG-ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTA 93 (281)
T ss_pred CCEEEEEECCCCEeecCCCC-ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEE
Confidence 34688999877665443322 345799999987777777764 3557888999866654432 2477888
Q ss_pred EEecC-CC-CEEEEeC-CC--CeEEEEECCCCceE
Q 040361 330 LELSA-CG-QFLVCGG-DQ--GQIVVRSMNSLEVV 359 (413)
Q Consensus 330 ~~~s~-~~-~~l~~~~-~d--g~i~v~d~~~~~~~ 359 (413)
+.+.. |+ ++.+.|. .+ ..|..||-.+...+
T Consensus 94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i 128 (281)
T PF12768_consen 94 LTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSI 128 (281)
T ss_pred EEeeccCCceEEEeceecCCCceEEEEcCCceEec
Confidence 77743 33 3444443 23 35666765544433
No 484
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=87.01 E-value=21 Score=35.05 Aligned_cols=89 Identities=12% Similarity=0.056 Sum_probs=53.3
Q ss_pred eeEEEccCCcEEEEECCCC-----eEEEEEeCCceee----eeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCce
Q 040361 288 SKLAASRHGRIVLYGDDDL-----SLHLFSINGKHLA----SSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEV 358 (413)
Q Consensus 288 ~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~----~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~ 358 (413)
..++|-|.|..+++-..|| .|.++..+|-... ....+..+..++|.-....++++ ..+.+.+|-..+..-
T Consensus 250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttkNyhW 328 (1243)
T COG5290 250 HQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTKNYHW 328 (1243)
T ss_pred hccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHh-hcceEEEEEccceEE
Confidence 4489999999999877554 4777776643322 22334445556665555444444 445899998776443
Q ss_pred EEEecCCCCcEEEEEEccC
Q 040361 359 VRRYSGVGKIITSLAVTPE 377 (413)
Q Consensus 359 ~~~~~~~~~~v~~~~~~~~ 377 (413)
--.....-..+.-+.|+|.
T Consensus 329 YLK~e~~ip~~s~vkwhpe 347 (1243)
T COG5290 329 YLKVERQIPGISYVKWHPE 347 (1243)
T ss_pred EEEEeecCCCcceeeeccc
Confidence 2222222334666788887
No 485
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=86.88 E-value=1.8 Score=24.00 Aligned_cols=28 Identities=14% Similarity=0.259 Sum_probs=20.9
Q ss_pred ceeEEEEecCCCCEEEEeecCC--CeEEEE
Q 040361 134 SQCFTTMQTPSENFLITCGNWE--NSFQVI 161 (413)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~g~~d--~~i~i~ 161 (413)
..-....|+|+|+.++.++..+ |.-.||
T Consensus 9 ~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 9 GDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3456778999999999988877 666665
No 486
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=86.24 E-value=19 Score=30.23 Aligned_cols=48 Identities=19% Similarity=0.164 Sum_probs=28.2
Q ss_pred EEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCC---CcEEEEEec
Q 040361 159 QVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYD---TTVMVWEVI 206 (413)
Q Consensus 159 ~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d---g~i~iw~~~ 206 (413)
.+||+.+++....-....--..+-.+-+||++|.+|+.. ..+++++..
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~ 99 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPC 99 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecC
Confidence 478887776543222223333344577899999998752 335666543
No 487
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=85.74 E-value=21 Score=30.30 Aligned_cols=223 Identities=13% Similarity=0.106 Sum_probs=132.6
Q ss_pred CCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEE-E
Q 040361 93 QLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQ-S 171 (413)
Q Consensus 93 ~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~-~ 171 (413)
+.+|||..-+++...+.+.- +++. ........+..+.....+..-|++...+.=++ ..|.-.|-++.+... .
T Consensus 68 apapdG~VWft~qg~gaiGh----LdP~-tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~--~aI~R~dpkt~evt~f~ 140 (353)
T COG4257 68 APAPDGAVWFTAQGTGAIGH----LDPA-TGEVETYPLGSGASPHGIVVGPDGSAWITDTG--LAIGRLDPKTLEVTRFP 140 (353)
T ss_pred ccCCCCceEEecCcccccee----cCCC-CCceEEEecCCCCCCceEEECCCCCeeEecCc--ceeEEecCcccceEEee
Confidence 34677777777766666643 3332 12222223344555667777888887776332 144445554444332 1
Q ss_pred e--ecCCCeEEEEEECCCCCEEEEccC---------CCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecC
Q 040361 172 I--RQHRDVVSCVAVTTDGSILATGSY---------DTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGH 240 (413)
Q Consensus 172 ~--~~h~~~v~~~~~~~~~~~l~s~s~---------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 240 (413)
+ +.-........|.+.|++-+|+.. .+.|++|+.- .
T Consensus 141 lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP---------------------------------q 187 (353)
T COG4257 141 LPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP---------------------------------Q 187 (353)
T ss_pred cccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC---------------------------------C
Confidence 1 223456777889998888888753 1233444332 1
Q ss_pred CCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCC--CCceeeEEEccCCcEEEEECCCCeEEEEEeCCcee
Q 040361 241 DDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPS--GSALSKLAASRHGRIVLYGDDDLSLHLFSINGKHL 318 (413)
Q Consensus 241 ~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 318 (413)
...-+.|+..|+|...++.-.+..|-..|..++.. ..+..+. ...-+.+..+|.+..-++....+.++.||.....-
T Consensus 188 G~gpyGi~atpdGsvwyaslagnaiaridp~~~~a-ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW 266 (353)
T COG4257 188 GGGPYGICATPDGSVWYASLAGNAIARIDPFAGHA-EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSW 266 (353)
T ss_pred CCCCcceEECCCCcEEEEeccccceEEcccccCCc-ceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccc
Confidence 22346788899999888877777888778776632 2332221 12345566778888888888888999998875443
Q ss_pred eee---ecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCC
Q 040361 319 ASS---ESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSL 356 (413)
Q Consensus 319 ~~~---~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~ 356 (413)
... ..+....++.....++.-++-..-|.|.-+|.++.
T Consensus 267 ~eypLPgs~arpys~rVD~~grVW~sea~agai~rfdpeta 307 (353)
T COG4257 267 IEYPLPGSKARPYSMRVDRHGRVWLSEADAGAIGRFDPETA 307 (353)
T ss_pred eeeeCCCCCCCcceeeeccCCcEEeeccccCceeecCcccc
Confidence 332 23334556666666666665555667777776653
No 488
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=85.74 E-value=20 Score=30.08 Aligned_cols=129 Identities=11% Similarity=0.174 Sum_probs=66.5
Q ss_pred cceeEEEEecCCCCEEEEeecCCC--eEEEEEcCC----CcEEE---EeecCCCeEEEEEECCCCCEEEEccCCCc-EEE
Q 040361 133 GSQCFTTMQTPSENFLITCGNWEN--SFQVIALND----GRVVQ---SIRQHRDVVSCVAVTTDGSILATGSYDTT-VMV 202 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~g~~d~--~i~i~~~~~----~~~~~---~~~~h~~~v~~~~~~~~~~~l~s~s~dg~-i~i 202 (413)
...|-.-.+.++|+.+.+.|..+| .+++++..+ ..... .+. ....=-....-+||+.|+.|+.+.- ...
T Consensus 66 d~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~-~~RWYpT~~~L~DG~vlIvGG~~~~t~E~ 144 (243)
T PF07250_consen 66 DTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQ-SGRWYPTATTLPDGRVLIVGGSNNPTYEF 144 (243)
T ss_pred CCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccccc-CCCccccceECCCCCEEEEeCcCCCcccc
Confidence 445666667899999988887665 588887643 11111 111 1111122334469999999887732 222
Q ss_pred EEeccccccccccccceeecCCCceeeecCceeeee--cCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEe
Q 040361 203 WEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILC--GHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLC 280 (413)
Q Consensus 203 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 280 (413)
|.-......... +. .+.... ....----+...|+|++++.+..+. .+||..+.+.++.+.
T Consensus 145 ~P~~~~~~~~~~---~~-------------~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~lP 206 (243)
T PF07250_consen 145 WPPKGPGPGPVT---LP-------------FLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVRTLP 206 (243)
T ss_pred cCCccCCCCcee---ee-------------cchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEeeCC
Confidence 222111000000 00 000000 0011112355679999999887654 456887777666654
No 489
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=85.23 E-value=8.2 Score=30.49 Aligned_cols=31 Identities=29% Similarity=0.458 Sum_probs=24.7
Q ss_pred CcEEEEEEccCC------eEE-EEcCCCeEEEEEecCC
Q 040361 367 KIITSLAVTPEE------CFL-AGTKDGCLLVYSIENR 397 (413)
Q Consensus 367 ~~v~~~~~~~~~------~~l-~~~~dg~i~vw~~~~~ 397 (413)
..+.+++|||.| .+| +.+.++.|.+|.-...
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 379999999953 355 4889999999997754
No 490
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=84.87 E-value=3.2 Score=21.82 Aligned_cols=25 Identities=16% Similarity=0.332 Sum_probs=20.4
Q ss_pred EEEEeCCCCeEEEEECCCCceEEEe
Q 040361 338 FLVCGGDQGQIVVRSMNSLEVVRRY 362 (413)
Q Consensus 338 ~l~~~~~dg~i~v~d~~~~~~~~~~ 362 (413)
.+++++.+|.+..+|..+|+.+.++
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEEc
Confidence 6777888999999999988877553
No 491
>PRK13614 lipoprotein LpqB; Provisional
Probab=83.39 E-value=45 Score=32.18 Aligned_cols=150 Identities=15% Similarity=0.084 Sum_probs=84.7
Q ss_pred CeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCC--eEEEEEeCCc----
Q 040361 243 IITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDL--SLHLFSINGK---- 316 (413)
Q Consensus 243 ~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~i~d~~~~---- 316 (413)
.+.+.+.++++..++....++. .+|-...+.....+.. +..+..-.|++++ .+-+...+. .|..+...+.
T Consensus 344 ~~~s~avS~~g~~~A~~~~~~~-~l~~~~~g~~~~~~~~--g~~Lt~PS~d~~g-~vWtv~~g~~~~vv~~~~~g~~~~~ 419 (573)
T PRK13614 344 GPASPAESPVSQTVAFLNGSRT-TLYTVSPGQPARALTS--GSTLTRPSFSPQD-WVWTAGPGGNGRIVAYRPTGVAEGA 419 (573)
T ss_pred cccceeecCCCceEEEecCCCc-EEEEecCCCcceeeec--CCCccCCcccCCC-CEEEeeCCCCceEEEEecCCCcccc
Confidence 6778899999998888777662 3333223433333222 2245666777777 333333322 4444443321
Q ss_pred -----eeeeeecCC-ceeEEEecCCCCEEEE-eCCCCe--EEEEEC---CCCceEE-----EecCCCCcEEEEEEccCCe
Q 040361 317 -----HLASSESNG-RLNCLELSACGQFLVC-GGDQGQ--IVVRSM---NSLEVVR-----RYSGVGKIITSLAVTPEEC 379 (413)
Q Consensus 317 -----~~~~~~~~~-~i~~~~~s~~~~~l~~-~~~dg~--i~v~d~---~~~~~~~-----~~~~~~~~v~~~~~~~~~~ 379 (413)
.+......+ .|..+.+|+||-.++. ...+|. |+|--+ ..+.+.. .+ .....+.++.|..++.
T Consensus 420 ~~~~~~v~~~~l~g~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~G~P~~L~~~~~~-~~~~~~~sl~W~~~~s 498 (573)
T PRK13614 420 QAPTVTLTADWLAGRTVKELRVSREGVRALVISEQNGKSRVQVAGIVRNEDGTPRELTAPITL-AADSDADTGAWVGDST 498 (573)
T ss_pred cccceeecccccCCCeeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCCCCCeEEccCceec-ccCCCcceeEEcCCCE
Confidence 111112233 5999999999976554 334554 665332 2444221 12 2346889999999988
Q ss_pred EEEEc----CCCeEEEEEecCC
Q 040361 380 FLAGT----KDGCLLVYSIENR 397 (413)
Q Consensus 380 ~l~~~----~dg~i~vw~~~~~ 397 (413)
+++++ .+..+++..+..+
T Consensus 499 l~V~~~~~~~~~~~~~v~v~~g 520 (573)
T PRK13614 499 VVVTKASATSNVVPELLSVDAG 520 (573)
T ss_pred EEEEeccCCCcceEEEEEeCCC
Confidence 77532 3355778888544
No 492
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=82.96 E-value=6.9 Score=37.64 Aligned_cols=37 Identities=14% Similarity=0.144 Sum_probs=28.4
Q ss_pred ceeEEEecC----CCCEEEEeCCCCeEEEEECCCCceEEEe
Q 040361 326 RLNCLELSA----CGQFLVCGGDQGQIVVRSMNSLEVVRRY 362 (413)
Q Consensus 326 ~i~~~~~s~----~~~~l~~~~~dg~i~v~d~~~~~~~~~~ 362 (413)
....++++. +..++++-+.|+.+|+||+.+++++...
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 345566666 6789999999999999999999986554
No 493
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=81.97 E-value=14 Score=25.35 Aligned_cols=40 Identities=15% Similarity=0.043 Sum_probs=27.1
Q ss_pred CCCCeEEEEEeCCceeee-eecCCceeEEEecCCCCEEEEe
Q 040361 303 DDDLSLHLFSINGKHLAS-SESNGRLNCLELSACGQFLVCG 342 (413)
Q Consensus 303 ~~d~~i~i~d~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~ 342 (413)
..+|.+..||+.+++... ...-.-.+.+++++|+.+++++
T Consensus 34 ~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 34 RPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp ---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEE
T ss_pred CCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEE
Confidence 345788899999766544 3334567899999999987766
No 494
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=81.97 E-value=36 Score=30.09 Aligned_cols=105 Identities=15% Similarity=0.147 Sum_probs=52.7
Q ss_pred CCCEEEEeeCCC-----cEEEEEccCCeEE---EEEeCCCCCce-eeEEEccCCcEEEEECC-----CCeEEEEEeCCce
Q 040361 252 ELDIVISGSKDG-----TCVFHTLREGRYV---RSLCHPSGSAL-SKLAASRHGRIVLYGDD-----DLSLHLFSINGKH 317 (413)
Q Consensus 252 ~~~~l~s~~~dg-----~i~vwd~~~~~~~---~~~~~~~~~~v-~~~~~~~~~~~l~~~~~-----d~~i~i~d~~~~~ 317 (413)
++.+++.|+.++ .+..+|+.+.+.. ..+. +...+. ...+..-++++.+.|+. ...+..||+....
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~-~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIG-NLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcC-CCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 455667776543 4666777665531 1221 111111 11222235667777764 2368888887443
Q ss_pred eeeee---cCCceeEEEecCCCCEEEEeCCCC----eEEEEECCCCc
Q 040361 318 LASSE---SNGRLNCLELSACGQFLVCGGDQG----QIVVRSMNSLE 357 (413)
Q Consensus 318 ~~~~~---~~~~i~~~~~s~~~~~l~~~~~dg----~i~v~d~~~~~ 357 (413)
-.... ........+...++++.+.|+.++ .+.+||..+.+
T Consensus 151 W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 151 WFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred eeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 22221 111122222334677778887654 35688887654
No 495
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=81.77 E-value=37 Score=30.17 Aligned_cols=98 Identities=15% Similarity=0.218 Sum_probs=54.3
Q ss_pred eEEEEEecCCCEEEEeeCCCcEEEEEccCCeE---EEEEe---CCCCCceeeEEEccC----CcEEEEECCC--------
Q 040361 244 ITCLYVSVELDIVISGSKDGTCVFHTLREGRY---VRSLC---HPSGSALSKLAASRH----GRIVLYGDDD-------- 305 (413)
Q Consensus 244 i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~---~~~~~---~~~~~~v~~~~~~~~----~~~l~~~~~d-------- 305 (413)
.++|+|.|+++++++ ...|.|++++ ..+.. +..+. .........++++|+ +.+.++.+..
T Consensus 4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 478999999877665 5699999999 44443 22221 122346788999994 4433333321
Q ss_pred CeEEEEEeCCc--e------eee-e----ecCCceeEEEecCCCCEEEEeC
Q 040361 306 LSLHLFSINGK--H------LAS-S----ESNGRLNCLELSACGQFLVCGG 343 (413)
Q Consensus 306 ~~i~i~d~~~~--~------~~~-~----~~~~~i~~~~~s~~~~~l~~~~ 343 (413)
..|.-|..... . +.. . .....-..|+|.|||.+.++.+
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G 132 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVG 132 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeC
Confidence 24444554422 1 111 1 1234567799999997665543
No 496
>PLN02193 nitrile-specifier protein
Probab=81.77 E-value=47 Score=31.30 Aligned_cols=104 Identities=10% Similarity=0.135 Sum_probs=53.2
Q ss_pred CCCEEEEeeCCC-----cEEEEEccCCeEEEEEeCCC---CCceeeEEEccCCcEEEEECCC----CeEEEEEeCCceee
Q 040361 252 ELDIVISGSKDG-----TCVFHTLREGRYVRSLCHPS---GSALSKLAASRHGRIVLYGDDD----LSLHLFSINGKHLA 319 (413)
Q Consensus 252 ~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~d----~~i~i~d~~~~~~~ 319 (413)
++++++.|+.++ .+..||+.+.+-... ..+. .......+..-++++++.++.+ ..+.+||+....-.
T Consensus 278 ~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~-~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~ 356 (470)
T PLN02193 278 EENVYVFGGVSATARLKTLDSYNIVDKKWFHC-STPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWT 356 (470)
T ss_pred CCEEEEECCCCCCCCcceEEEEECCCCEEEeC-CCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEE
Confidence 456667776543 366788776553321 1100 0011111122356777777654 45889998754433
Q ss_pred eeec------CCceeEEEecCCCCEEEEeCCC--------------CeEEEEECCCCc
Q 040361 320 SSES------NGRLNCLELSACGQFLVCGGDQ--------------GQIVVRSMNSLE 357 (413)
Q Consensus 320 ~~~~------~~~i~~~~~s~~~~~l~~~~~d--------------g~i~v~d~~~~~ 357 (413)
.... .....++ ..-++++++.|+.+ ..+.+||+.+.+
T Consensus 357 ~~~~~g~~P~~R~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~ 413 (470)
T PLN02193 357 QVETFGVRPSERSVFAS-AAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQ 413 (470)
T ss_pred EeccCCCCCCCcceeEE-EEECCEEEEECCccCCccccccCccceeccEEEEEcCcCE
Confidence 2211 1111122 22356777777753 247888988654
No 497
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=81.65 E-value=6 Score=21.83 Aligned_cols=26 Identities=12% Similarity=0.235 Sum_probs=22.2
Q ss_pred EEEEeCCCCeEEEEECCCCceEEEec
Q 040361 338 FLVCGGDQGQIVVRSMNSLEVVRRYS 363 (413)
Q Consensus 338 ~l~~~~~dg~i~v~d~~~~~~~~~~~ 363 (413)
.+++++.+|.|+-.|..+|+.+..++
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~ 27 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQ 27 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEE
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeee
Confidence 45667999999999999999998776
No 498
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=81.29 E-value=47 Score=30.96 Aligned_cols=105 Identities=12% Similarity=0.071 Sum_probs=60.0
Q ss_pred CCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeE--EEEEe----CCCCCceeeEEEccCC------cEEEEEC----
Q 040361 240 HDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRY--VRSLC----HPSGSALSKLAASRHG------RIVLYGD---- 303 (413)
Q Consensus 240 h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~----~~~~~~v~~~~~~~~~------~~l~~~~---- 303 (413)
.-..-+.|+|.|++++|++--..|.|++++..++.. +..+. .........|+++|+- .+|++..
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~ 107 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKN 107 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccC
Confidence 344568899999998777665469999998655432 21111 1123467889999874 2344332
Q ss_pred ------CCCeEEEEEeCC--c------eeee-e--ecCCceeEEEecCCCCEEEEeCC
Q 040361 304 ------DDLSLHLFSING--K------HLAS-S--ESNGRLNCLELSACGQFLVCGGD 344 (413)
Q Consensus 304 ------~d~~i~i~d~~~--~------~~~~-~--~~~~~i~~~~~s~~~~~l~~~~~ 344 (413)
....|.-|.+.. . .+.. . ...+.-..|+|.|||.++++.++
T Consensus 108 ~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD 165 (454)
T TIGR03606 108 GDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGE 165 (454)
T ss_pred CCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECC
Confidence 123455565531 1 1111 1 11233457889999986665443
No 499
>PLN02193 nitrile-specifier protein
Probab=81.17 E-value=49 Score=31.16 Aligned_cols=104 Identities=12% Similarity=0.080 Sum_probs=53.8
Q ss_pred CCCEEEEeeCCC-----cEEEEEccCCeEEEEEeC---CCCCceeeEEEccCCcEEEEECCCC-----eEEEEEeCCcee
Q 040361 252 ELDIVISGSKDG-----TCVFHTLREGRYVRSLCH---PSGSALSKLAASRHGRIVLYGDDDL-----SLHLFSINGKHL 318 (413)
Q Consensus 252 ~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~ 318 (413)
++.+.+.|+.++ .+..+|+.+.+-...-.. +.. .-...+..-++++++.|+.++ .+..||+....-
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~-R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W 306 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTP-RSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKW 306 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCC-ccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEE
Confidence 455666666543 577888877654332111 111 111112223566777776543 467788765443
Q ss_pred eeeec-------CCceeEEEecCCCCEEEEeCCC----CeEEEEECCCCce
Q 040361 319 ASSES-------NGRLNCLELSACGQFLVCGGDQ----GQIVVRSMNSLEV 358 (413)
Q Consensus 319 ~~~~~-------~~~i~~~~~s~~~~~l~~~~~d----g~i~v~d~~~~~~ 358 (413)
..... ......+. -++++++.++.+ ..+.+||+.+.+-
T Consensus 307 ~~~~~~~~~~~~R~~~~~~~--~~gkiyviGG~~g~~~~dv~~yD~~t~~W 355 (470)
T PLN02193 307 FHCSTPGDSFSIRGGAGLEV--VQGKVWVVYGFNGCEVDDVHYYDPVQDKW 355 (470)
T ss_pred EeCCCCCCCCCCCCCcEEEE--ECCcEEEEECCCCCccCceEEEECCCCEE
Confidence 22211 11111222 267777777655 4688999987543
No 500
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=80.64 E-value=15 Score=28.96 Aligned_cols=31 Identities=6% Similarity=-0.109 Sum_probs=25.0
Q ss_pred CCeEEEEEecCC------CEEEEeeCCCcEEEEEccC
Q 040361 242 DIITCLYVSVEL------DIVISGSKDGTCVFHTLRE 272 (413)
Q Consensus 242 ~~i~~~~~~~~~------~~l~s~~~dg~i~vwd~~~ 272 (413)
..+..++|||.| .+|++.+.++.|.+|....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 378899999954 3688889999999998653
Done!