Query 040361
Match_columns 413
No_of_seqs 673 out of 4619
Neff 11.4
Searched_HMMs 29240
Date Mon Mar 25 12:11:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040361.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040361hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gqb_B Methylosome protein 50; 100.0 1.7E-44 5.9E-49 320.2 33.9 283 91-400 35-335 (344)
2 3ow8_A WD repeat-containing pr 100.0 1.1E-43 3.8E-48 312.7 33.6 270 97-394 47-319 (321)
3 1vyh_C Platelet-activating fac 100.0 6.9E-44 2.4E-48 325.0 32.7 274 92-395 114-410 (410)
4 1got_B GT-beta; complex (GTP-b 100.0 4.1E-43 1.4E-47 312.1 33.8 270 93-393 62-340 (340)
5 2ynn_A Coatomer subunit beta'; 100.0 1.1E-42 3.7E-47 304.4 33.5 279 91-397 18-303 (304)
6 1nr0_A Actin interacting prote 100.0 3.7E-42 1.3E-46 329.5 39.1 312 54-396 62-522 (611)
7 3frx_A Guanine nucleotide-bind 100.0 2.9E-42 9.9E-47 303.7 33.6 278 93-397 24-318 (319)
8 4g56_B MGC81050 protein; prote 100.0 2.6E-43 8.7E-48 315.1 26.9 281 90-397 46-344 (357)
9 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.6E-42 9E-47 307.4 32.4 287 92-402 22-341 (345)
10 2ynn_A Coatomer subunit beta'; 100.0 1.5E-41 5E-46 297.2 35.7 245 131-400 11-263 (304)
11 2pbi_B Guanine nucleotide-bind 100.0 4.9E-42 1.7E-46 306.5 33.0 272 92-393 70-354 (354)
12 1nr0_A Actin interacting prote 100.0 2.1E-41 7.2E-46 324.3 35.1 311 58-398 25-399 (611)
13 2ymu_A WD-40 repeat protein; u 100.0 9.5E-41 3.3E-45 318.5 38.5 305 54-393 265-577 (577)
14 4ery_A WD repeat-containing pr 100.0 2.5E-40 8.6E-45 290.8 36.7 274 93-395 30-311 (312)
15 1vyh_C Platelet-activating fac 100.0 4.1E-41 1.4E-45 306.7 32.6 246 130-400 105-373 (410)
16 1erj_A Transcriptional repress 100.0 2.3E-40 7.9E-45 300.2 36.0 282 91-398 69-391 (393)
17 2xzm_R RACK1; ribosome, transl 100.0 1.2E-40 4.2E-45 296.6 33.4 278 96-398 37-342 (343)
18 1gxr_A ESG1, transducin-like e 100.0 4.7E-40 1.6E-44 292.0 37.1 314 54-395 12-336 (337)
19 3iz6_a 40S ribosomal protein R 100.0 1.7E-41 5.8E-46 306.3 25.2 278 92-399 72-378 (380)
20 3ow8_A WD repeat-containing pr 100.0 2E-40 6.7E-45 292.0 31.0 247 130-400 29-283 (321)
21 2ymu_A WD-40 repeat protein; u 100.0 2.5E-39 8.6E-44 308.6 38.6 306 55-395 225-538 (577)
22 2hes_X YDR267CP; beta-propelle 100.0 1.1E-39 3.9E-44 288.5 32.2 278 94-396 22-328 (330)
23 1got_B GT-beta; complex (GTP-b 100.0 3.4E-38 1.2E-42 280.3 36.1 248 131-400 53-305 (340)
24 3iz6_a 40S ribosomal protein R 100.0 8.7E-39 3E-43 288.5 32.5 283 53-357 68-377 (380)
25 3vl1_A 26S proteasome regulato 100.0 4.1E-39 1.4E-43 295.0 30.2 278 92-399 62-368 (420)
26 2pbi_B Guanine nucleotide-bind 100.0 4E-38 1.4E-42 281.2 34.7 276 53-352 66-354 (354)
27 1r5m_A SIR4-interacting protei 100.0 4.3E-39 1.5E-43 295.0 28.7 309 54-395 48-424 (425)
28 4aow_A Guanine nucleotide-bind 100.0 4.9E-38 1.7E-42 279.5 34.3 282 92-398 44-339 (340)
29 3dm0_A Maltose-binding peripla 100.0 2E-38 6.8E-43 308.5 33.8 281 93-396 389-693 (694)
30 1erj_A Transcriptional repress 100.0 4.5E-38 1.5E-42 285.2 32.9 244 130-400 61-345 (393)
31 2pm9_A Protein WEB1, protein t 100.0 1.2E-38 4.1E-43 291.5 28.9 294 90-401 16-342 (416)
32 3frx_A Guanine nucleotide-bind 100.0 8.1E-38 2.8E-42 275.3 33.1 242 131-398 15-269 (319)
33 3vl1_A 26S proteasome regulato 100.0 5.6E-39 1.9E-43 294.1 26.4 328 58-396 63-419 (420)
34 4ery_A WD repeat-containing pr 100.0 2.7E-37 9.2E-42 271.4 35.4 245 131-400 21-272 (312)
35 4aez_A CDC20, WD repeat-contai 100.0 1.7E-37 5.9E-42 282.4 35.3 277 95-401 100-385 (401)
36 3zwl_B Eukaryotic translation 100.0 3.6E-37 1.2E-41 276.9 36.8 288 93-400 39-350 (369)
37 4gqb_B Methylosome protein 50; 100.0 3.2E-38 1.1E-42 279.9 28.6 246 132-400 29-293 (344)
38 2pm9_A Protein WEB1, protein t 100.0 9.1E-40 3.1E-44 298.9 19.0 321 53-397 14-415 (416)
39 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.7E-37 9.2E-42 275.1 34.1 241 135-398 18-285 (345)
40 1sq9_A Antiviral protein SKI8; 100.0 5.3E-38 1.8E-42 285.5 30.0 280 99-398 27-397 (397)
41 2xzm_R RACK1; ribosome, transl 100.0 2.6E-37 8.8E-42 275.1 33.7 242 132-399 20-288 (343)
42 1gxr_A ESG1, transducin-like e 100.0 2.6E-37 8.7E-42 274.4 33.1 280 91-400 14-300 (337)
43 2hes_X YDR267CP; beta-propelle 100.0 3.6E-37 1.2E-41 272.5 33.3 248 131-398 12-282 (330)
44 2pm7_B Protein transport prote 100.0 3.2E-37 1.1E-41 268.7 31.6 243 131-396 7-285 (297)
45 3ei3_B DNA damage-binding prot 100.0 3E-37 1E-41 279.1 30.4 272 93-396 80-382 (383)
46 4g56_B MGC81050 protein; prote 100.0 1.8E-37 6.2E-42 277.2 27.8 258 131-411 40-314 (357)
47 1pgu_A Actin interacting prote 100.0 3E-36 1E-40 289.5 38.1 326 54-411 67-587 (615)
48 3odt_A Protein DOA1; ubiquitin 100.0 1.2E-36 4.1E-41 267.3 31.9 272 96-404 27-304 (313)
49 3i2n_A WD repeat-containing pr 100.0 1.1E-37 3.7E-42 279.1 25.6 278 92-398 24-355 (357)
50 3k26_A Polycomb protein EED; W 100.0 5.8E-38 2E-42 281.8 23.3 239 133-396 69-366 (366)
51 3dwl_C Actin-related protein 2 100.0 7.2E-38 2.5E-42 282.6 22.9 277 91-394 16-377 (377)
52 4h5i_A Guanine nucleotide-exch 100.0 5.1E-37 1.7E-41 275.0 28.2 221 152-397 100-344 (365)
53 3gre_A Serine/threonine-protei 100.0 2.6E-37 8.8E-42 284.6 26.0 277 92-393 69-437 (437)
54 1k8k_C P40, ARP2/3 complex 41 100.0 1.6E-36 5.4E-41 273.1 29.4 284 93-401 15-366 (372)
55 3bg1_A Protein SEC13 homolog; 100.0 5.2E-37 1.8E-41 269.8 25.3 244 131-396 11-293 (316)
56 2aq5_A Coronin-1A; WD40 repeat 100.0 1.1E-36 3.9E-41 277.1 28.0 280 94-399 42-345 (402)
57 3sfz_A APAF-1, apoptotic pepti 100.0 4.2E-36 1.4E-40 310.6 35.1 341 53-400 617-1038(1249)
58 1k8k_C P40, ARP2/3 complex 41 100.0 1E-35 3.5E-40 267.9 33.0 243 132-396 7-274 (372)
59 3dwl_C Actin-related protein 2 100.0 1.3E-37 4.3E-42 281.0 20.5 244 133-397 11-282 (377)
60 4e54_B DNA damage-binding prot 100.0 2.2E-37 7.5E-42 284.6 22.3 281 92-399 125-433 (435)
61 4gga_A P55CDC, cell division c 100.0 1.3E-35 4.3E-40 271.7 33.1 277 93-400 112-399 (420)
62 1r5m_A SIR4-interacting protei 100.0 3.3E-36 1.1E-40 275.9 28.8 280 91-398 50-363 (425)
63 2oaj_A Protein SNI1; WD40 repe 100.0 5.5E-36 1.9E-40 297.0 32.3 342 55-399 62-608 (902)
64 3f3f_A Nucleoporin SEH1; struc 100.0 9.8E-36 3.4E-40 265.2 30.4 255 131-400 9-341 (351)
65 2j04_B YDR362CP, TAU91; beta p 100.0 2.1E-37 7.1E-42 288.2 19.2 306 63-397 173-518 (524)
66 1pgu_A Actin interacting prote 100.0 5E-35 1.7E-39 281.0 36.1 334 54-396 163-614 (615)
67 3dm0_A Maltose-binding peripla 100.0 1.4E-35 4.8E-40 288.4 32.6 246 131-400 380-636 (694)
68 3mkq_A Coatomer beta'-subunit; 100.0 2.7E-35 9.1E-40 292.1 33.2 280 92-399 19-305 (814)
69 4ggc_A P55CDC, cell division c 100.0 9.3E-35 3.2E-39 255.8 32.7 274 94-398 33-317 (318)
70 3ei3_B DNA damage-binding prot 100.0 3.9E-35 1.3E-39 265.3 29.7 244 131-401 71-344 (383)
71 3v7d_B Cell division control p 100.0 5.7E-35 2E-39 271.1 31.1 295 97-408 131-433 (464)
72 3i2n_A WD repeat-containing pr 100.0 3.1E-35 1.1E-39 263.1 27.9 247 132-400 17-295 (357)
73 2ovr_B FBW7, F-BOX/WD repeat p 100.0 6.1E-34 2.1E-38 262.7 36.1 296 62-397 128-443 (445)
74 3jrp_A Fusion protein of prote 100.0 1.7E-34 5.8E-39 260.4 31.7 245 130-397 8-288 (379)
75 4aow_A Guanine nucleotide-bind 100.0 4.3E-34 1.5E-38 254.0 33.6 244 131-398 36-288 (340)
76 3odt_A Protein DOA1; ubiquitin 100.0 2.3E-34 7.7E-39 252.7 31.2 243 131-401 16-260 (313)
77 3dw8_B Serine/threonine-protei 100.0 2.1E-35 7E-40 272.7 25.5 285 92-395 34-445 (447)
78 1sq9_A Antiviral protein SKI8; 100.0 8.7E-35 3E-39 264.2 29.0 249 131-401 14-327 (397)
79 4a11_B DNA excision repair pro 100.0 2.3E-34 7.9E-39 262.2 31.7 285 93-401 50-370 (408)
80 3v7d_B Cell division control p 100.0 8E-34 2.7E-38 263.4 35.8 296 62-394 131-461 (464)
81 2oaj_A Protein SNI1; WD40 repe 100.0 5.1E-35 1.7E-39 290.1 27.5 331 54-398 20-521 (902)
82 2pm7_B Protein transport prote 100.0 1.7E-34 5.7E-39 251.6 27.6 237 92-354 15-284 (297)
83 2aq5_A Coronin-1A; WD40 repeat 100.0 2.4E-34 8.3E-39 261.7 29.3 245 139-399 40-302 (402)
84 3sfz_A APAF-1, apoptotic pepti 100.0 3.9E-34 1.3E-38 296.0 33.9 276 92-397 621-914 (1249)
85 1yfq_A Cell cycle arrest prote 100.0 1E-34 3.4E-39 258.3 25.5 242 131-402 9-288 (342)
86 3dw8_B Serine/threonine-protei 100.0 2.2E-34 7.6E-39 265.8 28.6 269 129-400 24-377 (447)
87 3mkq_A Coatomer beta'-subunit; 100.0 7.3E-34 2.5E-38 281.8 33.9 246 130-400 10-263 (814)
88 1yfq_A Cell cycle arrest prote 100.0 1.3E-34 4.4E-39 257.7 24.5 269 93-394 18-322 (342)
89 1p22_A F-BOX/WD-repeat protein 100.0 5.5E-34 1.9E-38 262.1 29.1 269 95-401 140-419 (435)
90 3zwl_B Eukaryotic translation 100.0 1.7E-33 5.8E-38 252.8 31.7 244 131-400 30-308 (369)
91 3mmy_A MRNA export factor; mRN 100.0 4.8E-34 1.7E-38 256.3 27.6 244 130-397 36-347 (368)
92 3k26_A Polycomb protein EED; W 100.0 1.5E-34 5E-39 259.6 24.2 243 132-400 17-322 (366)
93 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.9E-33 1E-37 258.3 33.0 245 132-397 101-392 (450)
94 2j04_B YDR362CP, TAU91; beta p 100.0 1.3E-34 4.4E-39 269.4 23.1 240 143-397 171-429 (524)
95 2ovr_B FBW7, F-BOX/WD repeat p 100.0 3.9E-33 1.3E-37 257.3 32.9 266 95-401 126-396 (445)
96 2xyi_A Probable histone-bindin 100.0 1.2E-33 4E-38 259.3 28.9 253 128-397 123-411 (430)
97 3gre_A Serine/threonine-protei 100.0 4.3E-34 1.5E-38 263.1 26.0 278 93-401 34-364 (437)
98 4e54_B DNA damage-binding prot 100.0 4.4E-34 1.5E-38 262.6 23.1 247 130-402 116-393 (435)
99 2j04_A TAU60, YPL007P, hypothe 100.0 5.7E-34 1.9E-38 259.0 22.1 252 91-395 20-296 (588)
100 3bg1_A Protein SEC13 homolog; 100.0 3.1E-34 1.1E-38 252.1 19.2 239 91-354 18-292 (316)
101 4gq1_A NUP37; propeller, trans 100.0 9.6E-33 3.3E-37 250.0 28.9 238 136-396 91-389 (393)
102 4aez_A CDC20, WD repeat-contai 100.0 4.1E-32 1.4E-36 246.9 32.7 265 66-363 106-388 (401)
103 1l0q_A Surface layer protein; 100.0 3.6E-31 1.2E-35 239.9 36.3 268 99-400 3-279 (391)
104 4h5i_A Guanine nucleotide-exch 100.0 1.6E-32 5.6E-37 245.8 27.1 278 54-355 17-343 (365)
105 3jro_A Fusion protein of prote 100.0 6.1E-33 2.1E-37 271.5 25.7 244 131-397 7-286 (753)
106 3lrv_A PRE-mRNA-splicing facto 100.0 6.3E-33 2.2E-37 246.8 22.2 238 141-399 44-295 (343)
107 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.4E-31 4.7E-36 247.1 31.6 234 134-394 5-337 (450)
108 4gga_A P55CDC, cell division c 100.0 2.7E-31 9.4E-36 242.9 32.1 283 63-375 116-415 (420)
109 4a11_B DNA excision repair pro 100.0 4.8E-32 1.6E-36 246.9 26.5 327 54-396 46-405 (408)
110 3bws_A Protein LP49; two-domai 100.0 3.6E-30 1.2E-34 236.6 38.2 277 92-396 128-432 (433)
111 1p22_A F-BOX/WD-repeat protein 100.0 5.2E-31 1.8E-35 242.2 32.2 230 133-398 133-367 (435)
112 3lrv_A PRE-mRNA-splicing facto 100.0 3.3E-32 1.1E-36 242.2 23.3 266 93-397 43-334 (343)
113 3jrp_A Fusion protein of prote 100.0 3.6E-31 1.2E-35 238.6 30.1 212 166-399 1-243 (379)
114 2w18_A PALB2, fancn, partner a 100.0 7.3E-31 2.5E-35 224.3 29.9 236 148-395 56-356 (356)
115 1l0q_A Surface layer protein; 100.0 1.5E-29 5.1E-34 229.3 37.6 304 64-400 3-346 (391)
116 3vu4_A KMHSV2; beta-propeller 100.0 8.4E-31 2.9E-35 233.9 28.9 268 92-400 25-340 (355)
117 2j04_A TAU60, YPL007P, hypothe 100.0 4.8E-31 1.6E-35 239.8 27.3 285 55-382 19-346 (588)
118 3f3f_A Nucleoporin SEH1; struc 100.0 3.1E-31 1E-35 236.1 25.7 257 93-362 18-344 (351)
119 3bws_A Protein LP49; two-domai 100.0 2.1E-29 7E-34 231.5 34.1 244 130-400 119-394 (433)
120 4ggc_A P55CDC, cell division c 100.0 5.7E-29 2E-33 218.8 33.3 243 138-411 30-287 (318)
121 3vu4_A KMHSV2; beta-propeller 100.0 1.4E-29 4.9E-34 225.9 28.4 232 130-398 16-273 (355)
122 2xyi_A Probable histone-bindin 100.0 1.3E-29 4.3E-34 232.5 25.1 243 93-356 135-411 (430)
123 3jro_A Fusion protein of prote 100.0 2.5E-29 8.4E-34 246.0 27.7 209 169-399 2-241 (753)
124 3mmy_A MRNA export factor; mRN 100.0 6.5E-29 2.2E-33 222.8 24.4 216 162-400 25-308 (368)
125 4gq1_A NUP37; propeller, trans 100.0 6.8E-29 2.3E-33 224.7 21.4 258 94-353 97-387 (393)
126 2w18_A PALB2, fancn, partner a 100.0 4.5E-27 1.5E-31 201.0 28.7 177 154-353 155-355 (356)
127 1nir_A Nitrite reductase; hemo 100.0 1.7E-25 5.7E-30 209.8 35.6 315 59-400 145-518 (543)
128 2hqs_A Protein TOLB; TOLB, PAL 100.0 4.4E-26 1.5E-30 207.5 25.6 225 145-398 143-389 (415)
129 1nir_A Nitrite reductase; hemo 99.9 2.1E-25 7.2E-30 209.1 29.0 274 93-400 144-462 (543)
130 2hqs_A Protein TOLB; TOLB, PAL 99.9 4.1E-25 1.4E-29 201.1 29.3 247 98-378 143-409 (415)
131 1ri6_A Putative isomerase YBHE 99.9 1.7E-24 5.7E-29 192.3 28.9 241 132-395 36-307 (343)
132 3u4y_A Uncharacterized protein 99.9 4.4E-24 1.5E-28 188.7 29.8 238 138-399 44-307 (331)
133 3vgz_A Uncharacterized protein 99.9 1.2E-23 4.3E-28 187.5 30.2 258 93-381 47-328 (353)
134 3u4y_A Uncharacterized protein 99.9 3.1E-23 1.1E-27 183.3 31.7 234 139-399 3-255 (331)
135 1pby_B Quinohemoprotein amine 99.9 2.9E-24 9.9E-29 190.2 23.9 236 135-401 35-315 (337)
136 2ecf_A Dipeptidyl peptidase IV 99.9 1.1E-23 3.7E-28 206.7 29.6 310 56-397 41-460 (741)
137 3hfq_A Uncharacterized protein 99.9 4.5E-23 1.5E-27 183.6 28.8 243 133-396 39-317 (347)
138 3vgz_A Uncharacterized protein 99.9 2.5E-22 8.7E-27 179.0 31.6 242 132-400 39-307 (353)
139 2ecf_A Dipeptidyl peptidase IV 99.9 1.2E-23 4E-28 206.4 23.0 236 133-395 36-366 (741)
140 1ri6_A Putative isomerase YBHE 99.9 2.9E-22 1E-26 177.7 29.8 289 64-377 5-333 (343)
141 2ojh_A Uncharacterized protein 99.9 3.8E-23 1.3E-27 179.3 23.2 221 152-400 18-262 (297)
142 2ojh_A Uncharacterized protein 99.9 1.7E-23 5.7E-28 181.6 20.8 230 130-385 38-291 (297)
143 1xfd_A DIP, dipeptidyl aminope 99.9 2.8E-23 9.5E-28 203.2 22.3 275 91-397 21-394 (723)
144 2z3z_A Dipeptidyl aminopeptida 99.9 1.4E-22 4.9E-27 197.6 26.8 274 92-398 87-437 (706)
145 1jmx_B Amine dehydrogenase; ox 99.9 6.1E-22 2.1E-26 176.2 27.8 269 93-401 6-330 (349)
146 1xfd_A DIP, dipeptidyl aminope 99.9 5.6E-23 1.9E-27 201.0 22.9 295 59-382 24-425 (723)
147 1k32_A Tricorn protease; prote 99.9 1.1E-22 3.8E-27 206.2 23.5 246 133-398 203-463 (1045)
148 1pby_B Quinohemoprotein amine 99.9 2.7E-21 9.1E-26 171.1 26.9 265 64-365 2-320 (337)
149 2z3z_A Dipeptidyl aminopeptida 99.9 3.9E-22 1.3E-26 194.5 23.3 251 134-398 82-393 (706)
150 3o4h_A Acylamino-acid-releasin 99.9 5.2E-22 1.8E-26 189.1 22.7 230 133-394 21-274 (582)
151 1k32_A Tricorn protease; prote 99.9 6.1E-22 2.1E-26 200.8 22.2 265 94-396 211-502 (1045)
152 2oit_A Nucleoporin 214KDA; NH2 99.9 6.7E-22 2.3E-26 180.5 20.0 226 156-398 23-280 (434)
153 3scy_A Hypothetical bacterial 99.9 6.6E-20 2.3E-24 163.9 31.6 252 133-396 49-337 (361)
154 2oit_A Nucleoporin 214KDA; NH2 99.9 3.5E-21 1.2E-25 175.8 21.9 206 136-356 39-279 (434)
155 3pe7_A Oligogalacturonate lyas 99.9 5.5E-21 1.9E-25 172.7 20.0 275 91-396 40-382 (388)
156 3scy_A Hypothetical bacterial 99.9 1.2E-19 4.1E-24 162.3 28.0 268 93-375 56-360 (361)
157 1jof_A Carboxy-CIS,CIS-muconat 99.9 1.4E-19 4.6E-24 162.1 25.5 241 135-397 41-342 (365)
158 1q7f_A NHL, brain tumor CG1071 99.9 2.7E-18 9.2E-23 148.2 32.8 236 134-397 30-281 (286)
159 1z68_A Fibroblast activation p 99.9 2.2E-21 7.5E-26 189.6 14.5 235 137-398 19-348 (719)
160 3o4h_A Acylamino-acid-releasin 99.9 1.6E-20 5.3E-25 179.0 19.8 260 92-396 27-315 (582)
161 1z68_A Fibroblast activation p 99.9 1.4E-20 4.7E-25 183.9 18.9 314 60-398 24-445 (719)
162 3hfq_A Uncharacterized protein 99.8 1.8E-18 6.1E-23 153.8 28.5 220 155-396 15-271 (347)
163 3fvz_A Peptidyl-glycine alpha- 99.8 6.1E-18 2.1E-22 149.0 30.9 240 134-397 24-323 (329)
164 4a5s_A Dipeptidyl peptidase 4 99.8 6.1E-20 2.1E-24 179.5 16.4 235 136-398 19-355 (740)
165 3pe7_A Oligogalacturonate lyas 99.8 1.1E-18 3.7E-23 157.6 21.1 236 139-399 41-332 (388)
166 3azo_A Aminopeptidase; POP fam 99.8 1.7E-18 5.8E-23 167.5 23.9 230 142-398 87-371 (662)
167 1jmx_B Amine dehydrogenase; ox 99.8 7.2E-18 2.5E-22 149.8 25.2 291 59-365 7-335 (349)
168 3c5m_A Oligogalacturonate lyas 99.8 8.1E-19 2.8E-23 158.8 18.7 277 90-399 39-387 (396)
169 3no2_A Uncharacterized protein 99.8 4.6E-17 1.6E-21 139.0 27.5 213 144-384 4-230 (276)
170 1jof_A Carboxy-CIS,CIS-muconat 99.8 6.3E-18 2.1E-22 151.2 22.3 239 93-356 46-342 (365)
171 2dg1_A DRP35, lactonase; beta 99.8 1.7E-16 5.9E-21 140.0 31.3 262 90-386 9-300 (333)
172 2oiz_A Aromatic amine dehydrog 99.8 2.5E-17 8.7E-22 146.7 24.9 216 154-397 29-335 (361)
173 4a5s_A Dipeptidyl peptidase 4 99.8 4.7E-17 1.6E-21 159.1 28.3 329 59-398 24-451 (740)
174 3e5z_A Putative gluconolactona 99.8 3.3E-16 1.1E-20 135.8 28.7 234 135-398 29-288 (296)
175 1q7f_A NHL, brain tumor CG1071 99.8 3.5E-16 1.2E-20 134.9 27.8 196 135-357 78-282 (286)
176 2oiz_A Aromatic amine dehydrog 99.8 2.3E-16 7.9E-21 140.5 26.6 266 92-379 55-360 (361)
177 3c5m_A Oligogalacturonate lyas 99.8 7.7E-18 2.6E-22 152.4 16.0 235 137-399 39-332 (396)
178 1rwi_B Serine/threonine-protei 99.8 5.6E-16 1.9E-20 132.4 26.7 240 135-400 25-268 (270)
179 2xdw_A Prolyl endopeptidase; a 99.8 5.5E-16 1.9E-20 150.9 28.5 242 135-398 126-416 (710)
180 2gop_A Trilobed protease; beta 99.8 3.6E-16 1.2E-20 138.8 24.8 212 144-397 23-292 (347)
181 2gop_A Trilobed protease; beta 99.8 8.5E-16 2.9E-20 136.4 26.6 223 134-395 59-330 (347)
182 2z2n_A Virginiamycin B lyase; 99.7 2.5E-14 8.7E-19 123.9 33.9 237 134-398 57-297 (299)
183 3azo_A Aminopeptidase; POP fam 99.7 1.7E-16 5.7E-21 153.6 21.7 235 133-395 23-322 (662)
184 3dsm_A Uncharacterized protein 99.7 6.6E-15 2.3E-19 129.4 28.3 226 145-400 53-305 (328)
185 1qks_A Cytochrome CD1 nitrite 99.7 8.1E-14 2.8E-18 130.4 36.2 310 65-400 169-542 (567)
186 2dg1_A DRP35, lactonase; beta 99.7 2.3E-15 7.7E-20 132.8 23.4 230 138-395 10-262 (333)
187 2bkl_A Prolyl endopeptidase; m 99.7 1.5E-15 5.3E-20 147.4 21.8 241 134-399 121-400 (695)
188 3hrp_A Uncharacterized protein 99.7 1.3E-13 4.6E-18 124.5 32.9 237 135-395 132-409 (409)
189 3fvz_A Peptidyl-glycine alpha- 99.7 9.4E-15 3.2E-19 128.6 24.0 201 176-400 23-281 (329)
190 2z2n_A Virginiamycin B lyase; 99.7 3.3E-13 1.1E-17 116.8 32.8 235 134-395 15-254 (299)
191 3e5z_A Putative gluconolactona 99.7 1.9E-14 6.4E-19 124.7 24.1 201 169-395 20-245 (296)
192 1qks_A Cytochrome CD1 nitrite 99.7 2E-13 7E-18 127.7 32.4 227 145-397 166-422 (567)
193 3dsm_A Uncharacterized protein 99.7 6.5E-14 2.2E-18 123.0 26.7 218 154-399 15-256 (328)
194 2mad_H Methylamine dehydrogena 99.7 5E-13 1.7E-17 119.0 32.3 235 138-402 70-356 (373)
195 3no2_A Uncharacterized protein 99.7 1.5E-14 5.2E-19 123.4 21.2 187 187-401 4-200 (276)
196 1pjx_A Dfpase, DIISOPROPYLFLUO 99.7 3.1E-13 1.1E-17 118.0 30.1 233 136-397 20-300 (314)
197 1yr2_A Prolyl oligopeptidase; 99.7 2.6E-14 8.8E-19 139.8 25.2 241 135-399 164-444 (741)
198 2qc5_A Streptogramin B lactona 99.7 1.1E-12 3.7E-17 113.6 32.7 233 134-395 62-299 (300)
199 1rwi_B Serine/threonine-protei 99.6 6.8E-14 2.3E-18 119.4 22.0 197 136-358 69-267 (270)
200 2bkl_A Prolyl endopeptidase; m 99.6 1.3E-13 4.4E-18 133.9 25.1 229 142-395 76-348 (695)
201 2qc5_A Streptogramin B lactona 99.6 6.2E-12 2.1E-16 108.8 33.0 235 134-395 20-259 (300)
202 2xdw_A Prolyl endopeptidase; a 99.6 1.8E-13 6.2E-18 133.2 25.1 231 143-398 81-370 (710)
203 3sjl_D Methylamine dehydrogena 99.6 3.5E-13 1.2E-17 118.5 23.6 236 139-402 83-369 (386)
204 3g4e_A Regucalcin; six bladed 99.6 1.9E-12 6.3E-17 112.1 28.1 215 137-378 16-253 (297)
205 3c75_H MADH, methylamine dehyd 99.6 4.1E-13 1.4E-17 120.2 21.8 233 143-401 82-407 (426)
206 3dr2_A Exported gluconolactona 99.6 1.7E-12 5.7E-17 112.9 25.3 227 136-393 47-303 (305)
207 1xip_A Nucleoporin NUP159; bet 99.5 3.1E-13 1E-17 119.4 17.9 180 178-382 39-229 (388)
208 2ghs_A AGR_C_1268P; regucalcin 99.5 3.2E-11 1.1E-15 105.7 30.0 210 137-379 52-284 (326)
209 3sjl_D Methylamine dehydrogena 99.5 3.9E-12 1.3E-16 111.9 23.1 282 72-377 58-384 (386)
210 1xip_A Nucleoporin NUP159; bet 99.5 4.8E-13 1.6E-17 118.1 17.3 168 135-341 39-230 (388)
211 2mad_H Methylamine dehydrogena 99.5 2.2E-10 7.4E-15 102.0 34.5 246 93-362 72-357 (373)
212 1yr2_A Prolyl oligopeptidase; 99.5 3E-12 1E-16 125.2 23.6 227 142-395 115-392 (741)
213 2ece_A 462AA long hypothetical 99.5 1.8E-11 6.2E-16 108.3 24.9 218 143-384 93-399 (462)
214 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 2.5E-11 8.7E-16 105.7 23.8 198 176-399 17-259 (314)
215 3g4e_A Regucalcin; six bladed 99.4 1.6E-10 5.4E-15 99.9 27.4 200 174-400 10-233 (297)
216 1mda_H Methylamine dehydrogena 99.4 1.5E-11 5.2E-16 108.3 20.9 226 146-401 32-351 (368)
217 3iuj_A Prolyl endopeptidase; h 99.4 2.2E-11 7.4E-16 118.1 23.7 239 135-399 130-408 (693)
218 3hrp_A Uncharacterized protein 99.4 1.8E-10 6.3E-15 103.9 26.7 195 177-398 131-356 (409)
219 2qe8_A Uncharacterized protein 99.4 9.5E-11 3.3E-15 103.5 23.5 232 134-389 17-314 (343)
220 2hz6_A Endoplasmic reticulum t 99.4 9.9E-14 3.4E-18 123.7 3.6 202 144-379 8-216 (369)
221 1yiq_A Quinohemoprotein alcoho 99.4 1.7E-10 5.8E-15 111.1 26.3 205 155-382 182-534 (689)
222 3c75_H MADH, methylamine dehyd 99.4 3.2E-10 1.1E-14 101.5 24.0 267 73-362 99-409 (426)
223 3dr2_A Exported gluconolactona 99.3 7.2E-10 2.5E-14 96.1 25.0 185 134-347 86-299 (305)
224 1kb0_A Quinohemoprotein alcoho 99.3 7.9E-10 2.7E-14 106.3 26.9 219 155-396 189-567 (677)
225 2ghs_A AGR_C_1268P; regucalcin 99.3 1.9E-09 6.7E-14 94.3 27.1 190 178-395 50-259 (326)
226 3q7m_A Lipoprotein YFGL, BAMB; 99.3 6.3E-10 2.2E-14 99.6 24.3 227 144-402 102-343 (376)
227 3q7m_A Lipoprotein YFGL, BAMB; 99.3 1.6E-09 5.5E-14 97.0 26.1 224 145-393 143-375 (376)
228 1yiq_A Quinohemoprotein alcoho 99.3 7.5E-10 2.6E-14 106.6 25.3 257 145-406 121-515 (689)
229 1fwx_A Nitrous oxide reductase 99.3 2.2E-10 7.7E-15 105.0 20.4 232 143-400 99-435 (595)
230 3hxj_A Pyrrolo-quinoline quino 99.3 2.4E-10 8.3E-15 100.2 19.8 220 145-399 107-327 (330)
231 1kb0_A Quinohemoprotein alcoho 99.3 4.1E-10 1.4E-14 108.3 22.6 255 145-407 128-518 (677)
232 2hz6_A Endoplasmic reticulum t 99.3 2.8E-13 9.7E-18 120.8 -0.3 184 187-401 8-197 (369)
233 3iuj_A Prolyl endopeptidase; h 99.3 4.4E-10 1.5E-14 108.9 21.1 234 91-358 133-408 (693)
234 1npe_A Nidogen, entactin; glyc 99.3 3.8E-08 1.3E-12 83.4 30.1 221 134-379 36-263 (267)
235 2qe8_A Uncharacterized protein 99.2 1.1E-09 3.8E-14 96.6 20.0 205 177-398 17-280 (343)
236 2iwa_A Glutamine cyclotransfer 99.2 2.9E-08 9.8E-13 82.7 25.5 203 167-398 10-239 (266)
237 1npe_A Nidogen, entactin; glyc 99.2 7.2E-08 2.5E-12 81.7 28.9 227 146-400 2-242 (267)
238 2ece_A 462AA long hypothetical 99.2 2E-08 6.9E-13 89.0 24.6 231 88-343 77-399 (462)
239 1mda_H Methylamine dehydrogena 99.2 4.8E-09 1.7E-13 92.4 20.7 231 138-376 69-366 (368)
240 3hxj_A Pyrrolo-quinoline quino 99.1 2.2E-09 7.6E-14 94.1 15.5 206 152-394 36-242 (330)
241 2fp8_A Strictosidine synthase; 99.1 2.6E-07 9E-12 80.6 27.3 235 137-398 22-315 (322)
242 1kv9_A Type II quinohemoprotei 99.0 9.5E-08 3.3E-12 91.8 25.7 205 155-382 177-517 (668)
243 1fwx_A Nitrous oxide reductase 99.0 9.7E-08 3.3E-12 87.8 24.1 225 146-396 15-361 (595)
244 3nol_A Glutamine cyclotransfer 99.0 2.7E-07 9.1E-12 75.9 22.7 187 167-385 32-245 (262)
245 2iwa_A Glutamine cyclotransfer 99.0 3.2E-07 1.1E-11 76.4 23.4 192 137-356 24-238 (266)
246 4a2l_A BT_4663, two-component 99.0 8.3E-06 2.8E-10 80.4 37.0 240 134-398 263-528 (795)
247 2ad6_A Methanol dehydrogenase 99.0 2.2E-07 7.6E-12 87.4 24.2 256 145-404 115-502 (571)
248 3qqz_A Putative uncharacterize 99.0 1.9E-06 6.6E-11 71.3 26.5 205 134-354 27-252 (255)
249 2ad6_A Methanol dehydrogenase 98.9 3.6E-07 1.2E-11 85.9 24.9 131 251-381 311-521 (571)
250 1kv9_A Type II quinohemoprotei 98.9 2E-07 6.8E-12 89.6 23.6 257 145-405 117-497 (668)
251 3tc9_A Hypothetical hydrolase; 98.9 4.1E-06 1.4E-10 75.9 29.6 235 136-395 139-429 (430)
252 1ijq_A LDL receptor, low-densi 98.9 8.1E-06 2.8E-10 70.8 30.4 228 147-398 3-240 (316)
253 1w6s_A Methanol dehydrogenase 98.9 4.9E-07 1.7E-11 85.1 24.1 254 148-405 124-512 (599)
254 3v64_C Agrin; beta propeller, 98.9 9.4E-06 3.2E-10 71.4 30.5 227 145-398 44-277 (349)
255 4a2l_A BT_4663, two-component 98.9 4.4E-05 1.5E-09 75.2 38.4 231 133-397 356-615 (795)
256 2p4o_A Hypothetical protein; p 98.9 9.9E-06 3.4E-10 69.9 30.1 219 134-382 32-274 (306)
257 3nok_A Glutaminyl cyclase; bet 98.9 1.7E-06 5.8E-11 71.2 23.0 187 167-384 44-254 (268)
258 3mbr_X Glutamine cyclotransfer 98.9 5.2E-06 1.8E-10 67.7 25.2 197 167-394 10-233 (243)
259 1flg_A Protein (quinoprotein e 98.9 7.2E-07 2.5E-11 84.0 23.4 259 145-405 117-525 (582)
260 3sov_A LRP-6, low-density lipo 98.8 6.2E-06 2.1E-10 71.4 26.9 227 147-399 6-241 (318)
261 4hw6_A Hypothetical protein, I 98.8 1.3E-05 4.4E-10 72.6 28.5 233 136-395 141-432 (433)
262 3v65_B Low-density lipoprotein 98.8 1.5E-05 5.1E-10 71.2 28.4 227 145-398 87-320 (386)
263 3nok_A Glutaminyl cyclase; bet 98.8 5E-07 1.7E-11 74.3 16.8 169 145-342 64-253 (268)
264 3v64_C Agrin; beta propeller, 98.8 1.3E-05 4.4E-10 70.5 27.0 215 134-373 73-293 (349)
265 1flg_A Protein (quinoprotein e 98.8 1.5E-06 5.1E-11 81.9 22.1 132 251-382 331-545 (582)
266 3p5b_L Low density lipoprotein 98.8 6.4E-05 2.2E-09 67.4 31.6 231 146-399 84-323 (400)
267 1ijq_A LDL receptor, low-densi 98.7 2.6E-05 9E-10 67.5 28.1 205 134-363 30-246 (316)
268 3nol_A Glutamine cyclotransfer 98.7 2.4E-06 8.1E-11 70.3 19.9 157 239-400 38-205 (262)
269 2fp8_A Strictosidine synthase; 98.7 2.6E-06 8.7E-11 74.3 21.7 210 178-395 20-268 (322)
270 3v9f_A Two-component system se 98.7 4.5E-05 1.5E-09 75.0 31.7 237 133-398 312-570 (781)
271 3v65_B Low-density lipoprotein 98.7 1.8E-05 6.2E-10 70.6 26.4 217 133-374 115-337 (386)
272 1w6s_A Methanol dehydrogenase 98.7 3.5E-06 1.2E-10 79.3 22.5 203 155-381 181-531 (599)
273 3qqz_A Putative uncharacterize 98.7 3.4E-05 1.2E-09 63.8 25.7 198 171-393 21-250 (255)
274 3p5b_L Low density lipoprotein 98.7 6.6E-05 2.2E-09 67.3 29.6 217 133-374 111-339 (400)
275 3v9f_A Two-component system se 98.7 9.9E-05 3.4E-09 72.6 33.4 244 133-397 257-525 (781)
276 2p4o_A Hypothetical protein; p 98.6 3.4E-05 1.2E-09 66.5 25.7 200 167-395 23-241 (306)
277 3kya_A Putative phosphatase; s 98.6 9.2E-05 3.2E-09 67.3 28.7 243 135-398 140-477 (496)
278 3sov_A LRP-6, low-density lipo 98.6 5.4E-05 1.8E-09 65.5 26.3 215 134-373 35-256 (318)
279 2xe4_A Oligopeptidase B; hydro 98.6 5.1E-06 1.7E-10 81.1 21.8 239 135-398 175-460 (751)
280 3amr_A 3-phytase; beta-propell 98.6 3E-05 1E-09 66.7 23.6 228 149-396 43-329 (355)
281 1k3i_A Galactose oxidase precu 98.6 2.1E-06 7.2E-11 82.6 17.8 231 136-385 245-530 (656)
282 3mbr_X Glutamine cyclotransfer 98.6 1.6E-05 5.4E-10 64.9 19.9 157 239-400 16-183 (243)
283 2xbg_A YCF48-like protein; pho 98.5 0.00027 9.2E-09 61.5 28.4 227 135-394 81-320 (327)
284 2xe4_A Oligopeptidase B; hydro 98.5 8.4E-06 2.9E-10 79.6 20.2 192 178-394 175-398 (751)
285 1k3i_A Galactose oxidase precu 98.5 1.1E-05 3.9E-10 77.5 20.2 237 138-398 190-499 (656)
286 3m0c_C LDL receptor, low-densi 98.5 0.00028 9.4E-09 68.6 29.7 229 147-398 397-634 (791)
287 4a0p_A LRP6, LRP-6, low-densit 98.4 0.00096 3.3E-08 63.3 30.3 228 145-399 6-240 (628)
288 3m0c_C LDL receptor, low-densi 98.4 0.00042 1.4E-08 67.4 28.0 206 133-363 423-640 (791)
289 3amr_A 3-phytase; beta-propell 98.4 0.00036 1.2E-08 60.0 23.7 182 187-395 39-262 (355)
290 2xbg_A YCF48-like protein; pho 98.3 0.0012 3.9E-08 57.4 29.4 233 135-397 37-279 (327)
291 1n7d_A LDL receptor, low-densi 98.3 4.1E-06 1.4E-10 80.8 12.4 217 134-375 406-634 (699)
292 1n7d_A LDL receptor, low-densi 98.3 8.9E-06 3E-10 78.4 12.9 223 155-398 385-616 (699)
293 2p9w_A MAL S 1 allergenic prot 98.2 0.0015 5.2E-08 55.6 24.9 207 138-357 17-267 (334)
294 2p9w_A MAL S 1 allergenic prot 98.2 5.5E-05 1.9E-09 64.4 16.1 157 178-356 14-216 (334)
295 3tc9_A Hypothetical hydrolase; 98.2 0.00011 3.6E-09 66.6 19.1 152 243-396 138-301 (430)
296 3s94_A LRP-6, low-density lipo 98.2 0.00069 2.3E-08 64.3 24.4 222 155-399 17-246 (619)
297 3s94_A LRP-6, low-density lipo 98.2 0.0013 4.3E-08 62.5 25.8 204 134-362 40-250 (619)
298 4a0p_A LRP6, LRP-6, low-densit 98.1 0.0058 2E-07 58.0 29.3 202 134-361 37-243 (628)
299 2ism_A Putative oxidoreductase 98.1 0.0021 7.1E-08 56.4 24.4 225 135-382 32-330 (352)
300 4hw6_A Hypothetical protein, I 98.1 0.00087 3E-08 60.6 22.4 191 178-394 140-372 (433)
301 2xzh_A Clathrin heavy chain 1; 98.0 0.0056 1.9E-07 51.8 29.1 230 138-398 71-334 (365)
302 2vpj_A Kelch-like protein 12; 97.9 0.0055 1.9E-07 52.3 22.5 215 156-397 31-279 (301)
303 3sre_A PON1, serum paraoxonase 97.9 0.008 2.7E-07 52.3 22.8 138 243-382 113-282 (355)
304 2xn4_A Kelch-like protein 2; s 97.8 0.0074 2.5E-07 51.6 21.7 213 156-397 30-277 (302)
305 1bpo_A Protein (clathrin); cla 97.8 0.016 5.6E-07 51.1 29.2 229 138-397 70-332 (494)
306 3ii7_A Kelch-like protein 7; p 97.8 0.0096 3.3E-07 51.0 22.3 223 146-397 12-273 (306)
307 3a9g_A Putative uncharacterize 97.8 0.018 6.1E-07 50.5 26.4 225 135-383 30-328 (354)
308 3kya_A Putative phosphatase; s 97.7 0.0042 1.4E-07 56.6 18.4 154 243-396 140-341 (496)
309 3ott_A Two-component system se 97.7 0.03 1E-06 54.8 25.9 227 133-397 21-261 (758)
310 2uvk_A YJHT; unknown function, 97.6 0.01 3.6E-07 52.0 19.9 140 263-405 168-351 (357)
311 1zgk_A Kelch-like ECH-associat 97.6 0.019 6.6E-07 49.1 20.8 142 252-397 121-288 (308)
312 2ism_A Putative oxidoreductase 97.5 0.037 1.3E-06 48.4 24.8 199 177-398 31-299 (352)
313 2g8s_A Glucose/sorbosone dehyd 97.3 0.074 2.5E-06 46.5 23.8 245 135-394 19-350 (353)
314 2vpj_A Kelch-like protein 12; 97.3 0.045 1.5E-06 46.6 19.4 186 144-357 62-280 (301)
315 1tl2_A L10, protein (tachylect 97.2 0.0095 3.3E-07 47.4 12.8 156 242-406 41-218 (236)
316 3ii7_A Kelch-like protein 7; p 97.2 0.085 2.9E-06 44.9 20.8 186 144-357 55-274 (306)
317 4asc_A Kelch repeat and BTB do 97.2 0.095 3.3E-06 44.9 22.4 184 147-357 6-223 (315)
318 2be1_A Serine/threonine-protei 97.2 0.019 6.3E-07 49.6 15.5 192 148-360 12-236 (339)
319 3pbp_A Nucleoporin NUP82; beta 97.1 0.096 3.3E-06 46.2 19.6 141 249-392 28-208 (452)
320 2xn4_A Kelch-like protein 2; s 97.1 0.05 1.7E-06 46.3 18.1 187 144-357 61-278 (302)
321 3pbp_A Nucleoporin NUP82; beta 97.0 0.069 2.3E-06 47.1 17.7 155 142-311 29-208 (452)
322 1zgk_A Kelch-like ECH-associat 97.0 0.08 2.7E-06 45.2 18.1 175 156-357 90-289 (308)
323 3ei3_A DNA damage-binding prot 97.0 0.41 1.4E-05 48.9 33.4 243 131-397 551-874 (1158)
324 3s25_A Hypothetical 7-bladed b 97.0 0.14 4.9E-06 43.5 25.4 213 140-394 59-291 (302)
325 1tl2_A L10, protein (tachylect 96.9 0.042 1.4E-06 43.7 13.8 99 286-390 42-157 (236)
326 2woz_A Kelch repeat and BTB do 96.9 0.18 6.3E-06 43.1 21.6 142 252-397 109-288 (318)
327 3a9g_A Putative uncharacterize 96.9 0.21 7.1E-06 43.7 26.0 200 176-397 28-297 (354)
328 1xi4_A Clathrin heavy chain; a 96.8 0.057 1.9E-06 55.1 17.1 230 139-397 71-332 (1630)
329 1cru_A Protein (soluble quinop 96.8 0.22 7.4E-06 45.2 19.9 144 177-341 27-244 (454)
330 1bpo_A Protein (clathrin); cla 96.8 0.26 8.9E-06 43.7 24.3 230 94-357 73-333 (494)
331 3ott_A Two-component system se 96.8 0.45 1.5E-05 46.4 30.2 222 134-392 63-303 (758)
332 2be1_A Serine/threonine-protei 96.7 0.00093 3.2E-08 57.7 3.7 192 189-401 11-236 (339)
333 1cru_A Protein (soluble quinop 96.7 0.35 1.2E-05 43.8 21.9 155 241-397 26-260 (454)
334 2xzh_A Clathrin heavy chain 1; 96.6 0.26 9E-06 41.8 26.4 230 94-357 74-334 (365)
335 4asc_A Kelch repeat and BTB do 96.5 0.22 7.5E-06 42.6 17.2 105 251-357 147-279 (315)
336 2g8s_A Glucose/sorbosone dehyd 96.3 0.28 9.6E-06 42.8 16.8 147 177-341 18-214 (353)
337 2woz_A Kelch repeat and BTB do 96.1 0.47 1.6E-05 40.5 17.2 106 251-358 157-290 (318)
338 3ei3_A DNA damage-binding prot 96.1 1.5 5.1E-05 44.9 35.5 135 155-314 491-635 (1158)
339 3das_A Putative oxidoreductase 96.1 0.62 2.1E-05 40.3 26.2 206 175-398 30-294 (347)
340 3sre_A PON1, serum paraoxonase 96.1 0.64 2.2E-05 40.4 30.0 205 136-363 52-308 (355)
341 2zwa_A Leucine carboxyl methyl 96.0 1.2 4.1E-05 42.9 21.2 145 252-397 451-636 (695)
342 2zwa_A Leucine carboxyl methyl 95.9 0.28 9.7E-06 47.2 16.4 188 138-344 444-674 (695)
343 3s25_A Hypothetical 7-bladed b 95.7 0.81 2.8E-05 38.8 20.9 208 143-396 23-255 (302)
344 2uvk_A YJHT; unknown function, 95.6 0.47 1.6E-05 41.3 15.5 111 252-362 200-349 (357)
345 1xi4_A Clathrin heavy chain; a 95.4 0.98 3.3E-05 46.5 18.0 190 94-317 73-291 (1630)
346 3qhy_B Beta-lactamase inhibito 95.3 0.71 2.4E-05 38.7 14.7 204 155-396 41-246 (282)
347 3sbq_A Nitrous-oxide reductase 94.7 2.6 9.1E-05 38.7 23.1 72 325-397 323-409 (638)
348 3das_A Putative oxidoreductase 93.8 3 0.0001 36.1 27.9 233 135-382 33-323 (347)
349 3no0_A DNA gyrase subunit A; D 93.2 3.2 0.00011 34.5 18.7 202 133-354 23-245 (276)
350 1suu_A DNA gyrase subunit A; t 93.0 3.8 0.00013 34.8 20.0 197 185-397 5-232 (312)
351 3qhy_B Beta-lactamase inhibito 92.2 3.2 0.00011 34.7 12.9 142 243-396 64-207 (282)
352 3no0_A DNA gyrase subunit A; D 92.1 4.5 0.00015 33.6 20.3 154 241-396 67-246 (276)
353 3sbq_A Nitrous-oxide reductase 89.7 12 0.00043 34.5 24.3 198 144-355 141-408 (638)
354 4gq2_M Nucleoporin NUP120; bet 85.9 25 0.00086 35.2 15.8 72 243-314 237-316 (950)
355 4hvt_A Ritya.17583.B, post-pro 84.2 31 0.001 33.2 22.4 228 141-395 137-429 (711)
356 1zi0_A DNA gyrase subunit A; b 84.1 18 0.00062 30.5 23.8 204 133-355 41-277 (307)
357 1zvt_A Topoisomerase IV subuni 82.0 20 0.00067 29.3 12.5 140 255-396 4-163 (256)
358 1suu_A DNA gyrase subunit A; t 81.0 24 0.00083 29.8 25.5 240 143-396 6-283 (312)
359 3uc1_A DNA gyrase subunit A; D 80.0 27 0.00093 29.7 20.4 155 242-396 95-279 (327)
360 1wp5_A Topoisomerase IV; broke 79.2 29 0.00098 29.5 22.0 165 133-314 38-224 (323)
361 3q6k_A 43.2 kDa salivary prote 78.9 32 0.0011 30.0 22.3 180 157-342 124-341 (381)
362 3uc1_A DNA gyrase subunit A; D 74.6 39 0.0013 28.8 23.1 204 133-354 41-278 (327)
363 3b7f_A Glycosyl hydrolase, BNR 73.8 45 0.0015 29.1 22.5 138 243-383 116-296 (394)
364 3l6v_A GYRA, DNA gyrase subuni 73.6 45 0.0015 29.0 26.1 241 142-396 4-316 (370)
365 3zwu_A Alkaline phosphatase PH 72.6 15 0.00051 34.3 8.6 59 244-302 478-548 (592)
366 2wg3_C Hedgehog-interacting pr 72.3 56 0.0019 29.5 25.2 205 177-397 14-313 (463)
367 4gq2_M Nucleoporin NUP120; bet 72.1 16 0.00056 36.5 9.4 38 325-362 236-273 (950)
368 3l6v_A GYRA, DNA gyrase subuni 72.0 49 0.0017 28.7 21.8 200 96-314 5-264 (370)
369 3f7f_A Nucleoporin NUP120; nuc 71.4 27 0.00094 33.3 10.1 37 243-281 223-259 (729)
370 1zi0_A DNA gyrase subunit A; b 71.2 46 0.0016 28.0 25.7 238 145-396 3-277 (307)
371 1zvt_A Topoisomerase IV subuni 69.4 45 0.0015 27.2 13.3 112 244-355 35-163 (256)
372 4fhn_B Nucleoporin NUP120; pro 68.7 14 0.00048 37.9 8.3 39 243-281 239-277 (1139)
373 4a9v_A PHOX; hydrolase, beta-p 66.7 34 0.0012 31.7 9.4 60 243-302 477-548 (592)
374 3kci_A Probable E3 ubiquitin-p 65.4 69 0.0024 27.9 27.3 226 155-396 71-345 (389)
375 4a9v_A PHOX; hydrolase, beta-p 62.3 43 0.0015 31.1 9.2 60 135-194 477-548 (592)
376 1wp5_A Topoisomerase IV; broke 59.0 83 0.0028 26.7 24.0 144 253-396 106-277 (323)
377 3zwu_A Alkaline phosphatase PH 59.0 48 0.0016 31.0 9.1 59 136-194 478-548 (592)
378 3b7f_A Glycosyl hydrolase, BNR 58.6 91 0.0031 27.0 20.1 144 241-387 54-254 (394)
379 4hvt_A Ritya.17583.B, post-pro 58.0 1.3E+02 0.0046 28.8 19.1 197 180-397 132-382 (711)
380 3kci_A Probable E3 ubiquitin-p 56.2 1E+02 0.0035 26.8 23.2 150 243-395 106-292 (389)
381 4fhn_B Nucleoporin NUP120; pro 50.4 15 0.00051 37.7 4.7 37 326-362 239-275 (1139)
382 3mez_B Mannose-specific lectin 46.8 68 0.0023 22.0 11.1 60 253-314 24-83 (113)
383 3f7f_A Nucleoporin NUP120; nuc 46.5 31 0.0011 32.9 5.8 36 326-363 223-258 (729)
384 2wg3_C Hedgehog-interacting pr 41.6 2E+02 0.0067 25.9 28.0 52 135-187 15-79 (463)
385 3q6k_A 43.2 kDa salivary prote 41.4 1.8E+02 0.0061 25.3 19.9 142 146-303 171-342 (381)
386 3al9_A Plexin-A2; beta-propell 40.1 1.9E+02 0.0064 26.7 9.8 67 242-308 400-474 (539)
387 1q47_A Semaphorin 3A; beta pro 31.1 3E+02 0.01 25.0 9.7 67 243-309 405-486 (495)
388 1zvu_A Topoisomerase IV subuni 31.0 3.6E+02 0.012 25.8 12.6 142 251-396 470-633 (716)
389 3mez_B Mannose-specific lectin 30.1 1.3E+02 0.0045 20.5 8.0 18 295-312 23-40 (113)
390 2zux_A YESW protein; beta-prop 28.4 3.6E+02 0.012 25.0 23.7 152 239-398 361-534 (591)
391 1q47_A Semaphorin 3A; beta pro 24.3 1.9E+02 0.0065 26.3 7.0 53 298-350 423-487 (495)
392 3ol2_B Plexin-B1; beta-propell 22.5 4.5E+02 0.015 24.1 9.6 69 242-310 387-461 (528)
393 3nvq_A Semaphorin-7A; beta-pro 21.6 4.9E+02 0.017 24.3 9.2 56 147-202 381-444 (590)
No 1
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.7e-44 Score=320.20 Aligned_cols=283 Identities=15% Similarity=0.195 Sum_probs=226.5
Q ss_pred ccCCCCCCceeeecCCCCccccCCCc---CCCccc---CCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcC
Q 040361 91 TTQLQSGGNFTFSGSQDPFFGVGADI---LSPRNV---GSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALN 164 (413)
Q Consensus 91 ~~~~s~~~~~l~~~~~d~~~~~~~~~---~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~ 164 (413)
...|+|||.+|++++ |.++++|+.. +..... .........+...+.+++|+|++ .+++ |+.||.|+|||+.
T Consensus 35 ~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~-~s~dg~v~lWd~~ 111 (344)
T 4gqb_B 35 AARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILV-ASDSGAVELWELD 111 (344)
T ss_dssp EEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEE-EETTSEEEEEEEC
T ss_pred EEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEE-EECCCEEEEEecc
Confidence 346799999998877 7788887421 111111 11122233445678999999985 4554 5569999999999
Q ss_pred CCcEEEE----eecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecC
Q 040361 165 DGRVVQS----IRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGH 240 (413)
Q Consensus 165 ~~~~~~~----~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 240 (413)
+++.+.. +.+|.+.|++++|+|++++|++|+.|++|++||+.+++ .+..+.+|
T Consensus 112 ~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~-----------------------~~~~~~~h 168 (344)
T 4gqb_B 112 ENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQV-----------------------VLSSYRAH 168 (344)
T ss_dssp TTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----------------------EEEEECCC
T ss_pred CCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc-----------------------EEEEEcCc
Confidence 8875443 45799999999999999999999999999999999887 68889999
Q ss_pred CCCeEEEEEecCCC-EEEEeeCCCcEEEEEccCCeEEEEEeCC-CCCceeeEEEccC-CcEEEEECCCCeEEEEEeCC-c
Q 040361 241 DDIITCLYVSVELD-IVISGSKDGTCVFHTLREGRYVRSLCHP-SGSALSKLAASRH-GRIVLYGDDDLSLHLFSING-K 316 (413)
Q Consensus 241 ~~~i~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~~-~ 316 (413)
...|++++|++++. ++++++.|++|++||+++++....+... +...+.+++|+|+ ++++++|+.|+.|++||++. +
T Consensus 169 ~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~ 248 (344)
T 4gqb_B 169 AAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTS 248 (344)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--
T ss_pred CCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCc
Confidence 99999999999875 7899999999999999999988877532 3456899999984 67889999999999999984 4
Q ss_pred eeee-eecCCceeEEEecCCC-CEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEccCC-eEE-EEcCCCeEEEE
Q 040361 317 HLAS-SESNGRLNCLELSACG-QFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEE-CFL-AGTKDGCLLVY 392 (413)
Q Consensus 317 ~~~~-~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l-~~~~dg~i~vw 392 (413)
.+.. ..|...|++++|+|++ ++|++|+.||.|+|||+.+++++ .+.+|.+.|++++|+|++ .++ +++.|++|++|
T Consensus 249 ~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w 327 (344)
T 4gqb_B 249 CVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHH 327 (344)
T ss_dssp CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEE
T ss_pred EEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEE
Confidence 4433 4688999999999998 58999999999999999988765 577899999999999996 455 68999999999
Q ss_pred EecCCccc
Q 040361 393 SIENRRTS 400 (413)
Q Consensus 393 ~~~~~~~~ 400 (413)
++.+...+
T Consensus 328 ~v~~~~~~ 335 (344)
T 4gqb_B 328 VVPTEPLP 335 (344)
T ss_dssp ECCC----
T ss_pred ECCCCCCC
Confidence 99876544
No 2
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.1e-43 Score=312.68 Aligned_cols=270 Identities=13% Similarity=0.133 Sum_probs=233.9
Q ss_pred CCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCC
Q 040361 97 GGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHR 176 (413)
Q Consensus 97 ~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~ 176 (413)
++.++++|+.|+++++|+....... .......|...+.++.+++++..+++ |+.|+.|++||+.+++.+..+..|.
T Consensus 47 ~~~~l~tgs~D~~v~vW~~~~~~~~---~~~~l~gh~~~v~~~~~~~~~~~l~s-~s~D~~i~lWd~~~~~~~~~~~~~~ 122 (321)
T 3ow8_A 47 NSETVVTGSLDDLVKVWKWRDERLD---LQWSLEGHQLGVVSVDISHTLPIAAS-SSLDAHIRLWDLENGKQIKSIDAGP 122 (321)
T ss_dssp --CEEEEEETTSCEEEEEEETTEEE---EEEEECCCSSCEEEEEECSSSSEEEE-EETTSEEEEEETTTTEEEEEEECCT
T ss_pred CCCEEEEEcCCCCEEEEECCCCCee---eeeeeccCCCCEEEEEECCCCCEEEE-EeCCCcEEEEECCCCCEEEEEeCCC
Confidence 5678999999999999742211100 01112235677889999999887766 5559999999999999999999999
Q ss_pred CeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEE
Q 040361 177 DVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIV 256 (413)
Q Consensus 177 ~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l 256 (413)
..+.+++|+|++++|++|+.||.|++|++++++ ....+..|...|.+++|+|++++|
T Consensus 123 ~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~-----------------------~~~~~~~~~~~v~~~~~spdg~~l 179 (321)
T 3ow8_A 123 VDAWTLAFSPDSQYLATGTHVGKVNIFGVESGK-----------------------KEYSLDTRGKFILSIAYSPDGKYL 179 (321)
T ss_dssp TCCCCEEECTTSSEEEEECTTSEEEEEETTTCS-----------------------EEEEEECSSSCEEEEEECTTSSEE
T ss_pred ccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCc-----------------------eeEEecCCCceEEEEEECCCCCEE
Confidence 999999999999999999999999999998876 566778899999999999999999
Q ss_pred EEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCce-eee-eecCCceeEEEecC
Q 040361 257 ISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKH-LAS-SESNGRLNCLELSA 334 (413)
Q Consensus 257 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~-~~~~~~i~~~~~s~ 334 (413)
++|+.||.|++||+++++.+..+..+ ...|.+++|+|++++|++++.|+.|++||++... ... ..|...|.+++|+|
T Consensus 180 asg~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp 258 (321)
T 3ow8_A 180 ASGAIDGIINIFDIATGKLLHTLEGH-AMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCP 258 (321)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCC-SSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECT
T ss_pred EEEcCCCeEEEEECCCCcEEEEEccc-CCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECC
Confidence 99999999999999999999988866 4589999999999999999999999999998433 333 46888999999999
Q ss_pred CCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEccCCe-EEEEcCCCeEEEEEe
Q 040361 335 CGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEEC-FLAGTKDGCLLVYSI 394 (413)
Q Consensus 335 ~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~dg~i~vw~~ 394 (413)
++++|++|+.||.|++||+.+++++..+.+|...|.+++|+|++. +++++.||.|++||+
T Consensus 259 ~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 259 DDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred CCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 999999999999999999999999999999999999999999975 557999999999996
No 3
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=6.9e-44 Score=325.00 Aligned_cols=274 Identities=14% Similarity=0.191 Sum_probs=240.2
Q ss_pred cCCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEE
Q 040361 92 TQLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQS 171 (413)
Q Consensus 92 ~~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~ 171 (413)
..|+|++.++++|+.|+.+++|+.... ........|...+.++.|+|+++.+++ |+.|+.|++||+.+++.+..
T Consensus 114 ~~~~p~~~~l~s~s~Dg~i~vwd~~~~-----~~~~~l~~h~~~V~~v~~~~~~~~l~s-gs~D~~i~iwd~~~~~~~~~ 187 (410)
T 1vyh_C 114 VIFHPVFSVMVSASEDATIKVWDYETG-----DFERTLKGHTDSVQDISFDHSGKLLAS-CSADMTIKLWDFQGFECIRT 187 (410)
T ss_dssp EEECSSSSEEEEEESSSCEEEEETTTC-----CCCEEECCCSSCEEEEEECTTSSEEEE-EETTSCCCEEETTSSCEEEC
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCC-----cEEEEEeccCCcEEEEEEcCCCCEEEE-EeCCCeEEEEeCCCCceeEE
Confidence 357999999999999999999753211 112222335678899999999987776 55599999999999999999
Q ss_pred eecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEec
Q 040361 172 IRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSV 251 (413)
Q Consensus 172 ~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~ 251 (413)
+.+|...|.+++|+|++++|++|+.|++|++||+.++. ++..+.+|...|.++.+++
T Consensus 188 ~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~-----------------------~~~~~~~h~~~v~~~~~~~ 244 (410)
T 1vyh_C 188 MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY-----------------------CVKTFTGHREWVRMVRPNQ 244 (410)
T ss_dssp CCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC-----------------------EEEEEECCSSCEEEEEECT
T ss_pred EcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-----------------------EEEEEeCCCccEEEEEECC
Confidence 99999999999999999999999999999999998887 6788899999999999999
Q ss_pred CCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccC--------------------CcEEEEECCCCeEEEE
Q 040361 252 ELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRH--------------------GRIVLYGDDDLSLHLF 311 (413)
Q Consensus 252 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~--------------------~~~l~~~~~d~~i~i~ 311 (413)
++.++++|+.|+.|++||+++++....+..+ ...|.+++|+|+ +.++++|+.|+.|++|
T Consensus 245 ~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iw 323 (410)
T 1vyh_C 245 DGTLIASCSNDQTVRVWVVATKECKAELREH-RHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW 323 (410)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCEEEEECCC-SSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEE
T ss_pred CCCEEEEEcCCCeEEEEECCCCceeeEecCC-CceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEE
Confidence 9999999999999999999999998888765 468999999996 6789999999999999
Q ss_pred EeCC-ceeee-eecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEccCCe-EEEEcCCCe
Q 040361 312 SING-KHLAS-SESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEEC-FLAGTKDGC 388 (413)
Q Consensus 312 d~~~-~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~dg~ 388 (413)
|++. ..+.. ..|...|.+++|+|+|++|++|+.||.|++||+.+++.+..+.+|...|++++|+|++. +++|+.||+
T Consensus 324 d~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~ 403 (410)
T 1vyh_C 324 DVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQT 403 (410)
T ss_dssp ETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSE
T ss_pred ECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCc
Confidence 9984 44433 46888999999999999999999999999999999999999999999999999999975 557999999
Q ss_pred EEEEEec
Q 040361 389 LLVYSIE 395 (413)
Q Consensus 389 i~vw~~~ 395 (413)
|++|+++
T Consensus 404 i~vW~~r 410 (410)
T 1vyh_C 404 VKVWECR 410 (410)
T ss_dssp EEEEC--
T ss_pred EEEEeCC
Confidence 9999863
No 4
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=4.1e-43 Score=312.09 Aligned_cols=270 Identities=20% Similarity=0.305 Sum_probs=231.7
Q ss_pred CCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCC----cE
Q 040361 93 QLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDG----RV 168 (413)
Q Consensus 93 ~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~----~~ 168 (413)
.|+|+++++++++.|+.+++|+..... .......+...+.++.|+|+++++++++ .|+.+++|++.++ +.
T Consensus 62 ~~s~d~~~l~s~s~Dg~v~iWd~~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~d~~v~iw~~~~~~~~~~~ 135 (340)
T 1got_B 62 HWGTDSRLLLSASQDGKLIIWDSYTTN-----KVHAIPLRSSWVMTCAYAPSGNYVACGG-LDNICSIYNLKTREGNVRV 135 (340)
T ss_dssp EECTTSSEEEEEETTTEEEEEETTTCC-----EEEEEECSSSCEEEEEECTTSSEEEEEE-TTCEEEEEETTTCSBSCEE
T ss_pred EECCCCCEEEEEeCCCcEEEEECCCCC-----cceEeecCCccEEEEEECCCCCEEEEEe-CCCeEEEEECccCCCccee
Confidence 468899999999999999997432111 1111122456688999999999887755 5999999999765 45
Q ss_pred EEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEE
Q 040361 169 VQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLY 248 (413)
Q Consensus 169 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~ 248 (413)
...+.+|.+.|.++.|++++ .+++++.|++|++||+.+++ .+..+.+|.+.|.+++
T Consensus 136 ~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~-----------------------~~~~~~~h~~~v~~~~ 191 (340)
T 1got_B 136 SRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQ-----------------------QTTTFTGHTGDVMSLS 191 (340)
T ss_dssp EEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTE-----------------------EEEEECCCSSCEEEEE
T ss_pred EEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCc-----------------------EEEEEcCCCCceEEEE
Confidence 67788999999999999876 48999999999999998877 6778889999999999
Q ss_pred EecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCC-ceeeeeecC---
Q 040361 249 VSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSING-KHLASSESN--- 324 (413)
Q Consensus 249 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~--- 324 (413)
|+|+++++++|+.|+.|++||++++.....+..+ ...|.+++|+|++++|++++.|+.|++||++. ..+....+.
T Consensus 192 ~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h-~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~ 270 (340)
T 1got_B 192 LAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH-ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNII 270 (340)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCSEEEEECCC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCC
T ss_pred ECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCC-cCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcc
Confidence 9999999999999999999999999999888766 45899999999999999999999999999984 344444333
Q ss_pred CceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEccCCeEE-EEcCCCeEEEEE
Q 040361 325 GRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFL-AGTKDGCLLVYS 393 (413)
Q Consensus 325 ~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~dg~i~vw~ 393 (413)
..+.+++|+|+|++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++.++ +|+.||.|++||
T Consensus 271 ~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 271 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred cceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 479999999999999999999999999999999999999999999999999998654 699999999996
No 5
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.1e-42 Score=304.41 Aligned_cols=279 Identities=15% Similarity=0.185 Sum_probs=234.8
Q ss_pred ccCCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEE
Q 040361 91 TTQLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQ 170 (413)
Q Consensus 91 ~~~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~ 170 (413)
..+|+|+++++++++.|+.+++|+..... .......+...+.++.|+|+++.++++ +.|+.|++||+.+++.+.
T Consensus 18 ~~~fsp~~~~l~s~~~dg~v~lWd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~s~-s~d~~i~vwd~~~~~~~~ 91 (304)
T 2ynn_A 18 GIDFHPTEPWVLTTLYSGRVELWNYETQV-----EVRSIQVTETPVRAGKFIARKNWIIVG-SDDFRIRVFNYNTGEKVV 91 (304)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEETTTTE-----EEEEEECCSSCEEEEEEEGGGTEEEEE-ETTSEEEEEETTTCCEEE
T ss_pred EEEECCCCCEEEEEcCCCcEEEEECCCCc-----eeEEeeccCCcEEEEEEeCCCCEEEEE-CCCCEEEEEECCCCcEEE
Confidence 34679999999999999999997532111 111122345678889999999988774 459999999999999999
Q ss_pred EeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEe
Q 040361 171 SIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVS 250 (413)
Q Consensus 171 ~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~ 250 (413)
.+.+|.+.|.+++|+|++++|++|+.|++|++||++++.. ....+.+|...|.+++|+
T Consensus 92 ~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~----------------------~~~~~~~h~~~v~~v~~~ 149 (304)
T 2ynn_A 92 DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA----------------------LEQTFEGHEHFVMCVAFN 149 (304)
T ss_dssp EEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTE----------------------EEEEECCCCSCEEEEEEC
T ss_pred EEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcc----------------------hhhhhcccCCcEEEEEEC
Confidence 9999999999999999999999999999999999987641 356788999999999999
Q ss_pred c-CCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEcc--CCcEEEEECCCCeEEEEEeCCce-eee-eecCC
Q 040361 251 V-ELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASR--HGRIVLYGDDDLSLHLFSINGKH-LAS-SESNG 325 (413)
Q Consensus 251 ~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~-~~~-~~~~~ 325 (413)
| ++..|++|+.|+.|++||++++.....+..++...+..+.++| ++.++++++.|+.|++||++... +.. ..|..
T Consensus 150 p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~ 229 (304)
T 2ynn_A 150 PKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS 229 (304)
T ss_dssp TTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCC
Confidence 9 6789999999999999999988877777665556788899987 67899999999999999998543 333 46889
Q ss_pred ceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEccCCe--EEEEcCCCeEEEEEecCC
Q 040361 326 RLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEEC--FLAGTKDGCLLVYSIENR 397 (413)
Q Consensus 326 ~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~dg~i~vw~~~~~ 397 (413)
.|.+++|+|++.+|++|+.||.|++||+.+++.+..+..|...+.+++|+|++. +++++.|..+.+|++.+.
T Consensus 230 ~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~~~~~~~ 303 (304)
T 2ynn_A 230 NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGND 303 (304)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEEEECC--
T ss_pred CEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCceEEEEeccC
Confidence 999999999999999999999999999999999999999999999999999863 566555666888888753
No 6
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=3.7e-42 Score=329.49 Aligned_cols=312 Identities=16% Similarity=0.172 Sum_probs=251.3
Q ss_pred EEecCCCCCCeEEEEeecCCcEEEEecCce--EEEE-------EeeccCCCCCCceeeecCCC----CccccCCCcCCCc
Q 040361 54 IICSTRHQPSGIVYVGMLDSSIVLVNQGLT--LSVK-------MWLTTQLQSGGNFTFSGSQD----PFFGVGADILSPR 120 (413)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-------~~~~~~~s~~~~~l~~~~~d----~~~~~~~~~~~~~ 120 (413)
+.+..+.|++.+++++..++.+.+|+.... .... .....+|+|+|+.+++++.+ +.+.+|+ ..
T Consensus 62 v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd----~~ 137 (611)
T 1nr0_A 62 TTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD----TG 137 (611)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT----TC
T ss_pred eEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee----CC
Confidence 555678889999999999999999986321 1111 11234789999999988765 3677753 21
Q ss_pred ccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcE
Q 040361 121 NVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTV 200 (413)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i 200 (413)
........|...+.++.|+|++..++++|+.|+.|++||..+++....+.+|.+.|.+++|+||+++|++|+.|++|
T Consensus 138 ---~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i 214 (611)
T 1nr0_A 138 ---TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTI 214 (611)
T ss_dssp ---CBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred ---CCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcE
Confidence 12223345677899999999998766677789999999999999999999999999999999999999999999999
Q ss_pred EEEEeccccccccccccceeecCCCceeeecCceeeee-------cCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCC
Q 040361 201 MVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILC-------GHDDIITCLYVSVELDIVISGSKDGTCVFHTLREG 273 (413)
Q Consensus 201 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~ 273 (413)
++||+.+++ ....+. +|.+.|.+++|+|++++|++++.|++|++||++++
T Consensus 215 ~lwd~~~g~-----------------------~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~ 271 (611)
T 1nr0_A 215 VLYNGVDGT-----------------------KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL 271 (611)
T ss_dssp EEEETTTCC-----------------------EEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred EEEECCCCc-----------------------EeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCC
Confidence 999998776 333332 79999999999999999999999999999999988
Q ss_pred eEEEEEe------------------------------------------CCCCCceeeEEEccCCcEEEEECCCCeEEEE
Q 040361 274 RYVRSLC------------------------------------------HPSGSALSKLAASRHGRIVLYGDDDLSLHLF 311 (413)
Q Consensus 274 ~~~~~~~------------------------------------------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~ 311 (413)
+.+..+. ..+...|.+++|+|++++|++++.|+.|++|
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~W 351 (611)
T 1nr0_A 272 KVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSW 351 (611)
T ss_dssp EEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred ceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEE
Confidence 7765442 1234579999999999999999999999999
Q ss_pred EeCCceeee-----------------------------------------------------------------------
Q 040361 312 SINGKHLAS----------------------------------------------------------------------- 320 (413)
Q Consensus 312 d~~~~~~~~----------------------------------------------------------------------- 320 (413)
|+.......
T Consensus 352 d~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~ 431 (611)
T 1nr0_A 352 DISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACY 431 (611)
T ss_dssp ETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEES
T ss_pred ECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeC
Confidence 986321100
Q ss_pred -------------eecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCce--EEEecCCCCcEEEEEEccCCeEE-EEc
Q 040361 321 -------------SESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEV--VRRYSGVGKIITSLAVTPEECFL-AGT 384 (413)
Q Consensus 321 -------------~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l-~~~ 384 (413)
..+...+.+++|+|+|++|++|+.|+.|++||+.++.. +.. .+|...|++++|+|||+++ +++
T Consensus 432 ~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s 510 (611)
T 1nr0_A 432 KHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATD 510 (611)
T ss_dssp SEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEE
T ss_pred ceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEc
Confidence 01123467899999999999999999999999987653 233 5799999999999998766 599
Q ss_pred CCCeEEEEEecC
Q 040361 385 KDGCLLVYSIEN 396 (413)
Q Consensus 385 ~dg~i~vw~~~~ 396 (413)
.|++|++|++.+
T Consensus 511 ~d~~v~~w~~~~ 522 (611)
T 1nr0_A 511 QSRKVIPYSVAN 522 (611)
T ss_dssp TTSCEEEEEGGG
T ss_pred CCCCEEEEEcCC
Confidence 999999999987
No 7
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.9e-42 Score=303.73 Aligned_cols=278 Identities=19% Similarity=0.259 Sum_probs=231.7
Q ss_pred CCCCCC-ceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEE
Q 040361 93 QLQSGG-NFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQS 171 (413)
Q Consensus 93 ~~s~~~-~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~ 171 (413)
+++|++ +++++|+.|+++++|+..........+......|...+.++.|+|+++++++++ .|+.|++||+.+++.+..
T Consensus 24 ~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s-~D~~v~~wd~~~~~~~~~ 102 (319)
T 3frx_A 24 ATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSAS-WDKTLRLWDVATGETYQR 102 (319)
T ss_dssp EECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTTEEEEE
T ss_pred EccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEe-CCCEEEEEECCCCCeeEE
Confidence 356654 789999999999997532111111222223334567788899999999888755 599999999999999999
Q ss_pred eecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEec
Q 040361 172 IRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSV 251 (413)
Q Consensus 172 ~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~ 251 (413)
+.+|...|.+++|+|++.+|++|+.|++|++||++.. .+..+.+|...|.+++|+|
T Consensus 103 ~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~------------------------~~~~~~~h~~~v~~~~~~~ 158 (319)
T 3frx_A 103 FVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ------------------------CLATLLGHNDWVSQVRVVP 158 (319)
T ss_dssp EECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC------------------------EEEEECCCSSCEEEEEECC
T ss_pred EccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC------------------------eEEEEeccCCcEEEEEEcc
Confidence 9999999999999999999999999999999998643 4677889999999999998
Q ss_pred C------CCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCC-ceeeeeecC
Q 040361 252 E------LDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSING-KHLASSESN 324 (413)
Q Consensus 252 ~------~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~ 324 (413)
. +..+++++.|+.|++||+++++....+..+ ...|.+++|+|++++|++++.|+.|++||+.. +.+......
T Consensus 159 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h-~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 237 (319)
T 3frx_A 159 NEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGH-NSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237 (319)
T ss_dssp C------CCEEEEEETTSCEEEEETTTTEEEEEECCC-CSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC
T ss_pred CCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCC-CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC
Confidence 5 448999999999999999999988888766 46899999999999999999999999999984 444556667
Q ss_pred CceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecC--------CCCcEEEEEEccCCeEE-EEcCCCeEEEEEec
Q 040361 325 GRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSG--------VGKIITSLAVTPEECFL-AGTKDGCLLVYSIE 395 (413)
Q Consensus 325 ~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l-~~~~dg~i~vw~~~ 395 (413)
..+.+++|+|++.++++++.+ .+++|++.....+..+.. |...+.+++|+|||++| +|+.||.|++|++.
T Consensus 238 ~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 238 DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM 316 (319)
T ss_dssp SCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEe
Confidence 889999999999999988765 599999998777766542 45679999999998766 69999999999998
Q ss_pred CC
Q 040361 396 NR 397 (413)
Q Consensus 396 ~~ 397 (413)
++
T Consensus 317 t~ 318 (319)
T 3frx_A 317 TA 318 (319)
T ss_dssp EC
T ss_pred ec
Confidence 74
No 8
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.6e-43 Score=315.11 Aligned_cols=281 Identities=16% Similarity=0.201 Sum_probs=219.1
Q ss_pred eccCCCCCCceeeecCCC------CccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEc
Q 040361 90 LTTQLQSGGNFTFSGSQD------PFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIAL 163 (413)
Q Consensus 90 ~~~~~s~~~~~l~~~~~d------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~ 163 (413)
...+|||||++|++++.| +.+++|..... ............+...+.+++|+|++..+ +++ .||.|+|||+
T Consensus 46 ~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~-~~~~~~~~~~~~~~~~V~~~~~s~d~~~l-~~s-~dg~v~lWd~ 122 (357)
T 4g56_B 46 GAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEG-APNESLCTAGVQTEAGVTDVAWVSEKGIL-VAS-DSGAVELWEI 122 (357)
T ss_dssp EEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC----CGGGCSEEEECSSCEEEEEEETTTEEE-EEE-TTSCEEEC--
T ss_pred EEEEECCCCCEEEEEcCCCCccccCeEEEEECCCC-CcceeEecccCCCCCCEEEEEEcCCCCEE-EEE-CCCEEEEeec
Confidence 345789999999999985 44555422111 11112223344567789999999987654 434 4999999999
Q ss_pred CCCcEEE----EeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeec
Q 040361 164 NDGRVVQ----SIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCG 239 (413)
Q Consensus 164 ~~~~~~~----~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (413)
.+++... ...+|.+.|++++|+|++++|++|+.|+.|++||+.+++ .+..+.+
T Consensus 123 ~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~-----------------------~~~~~~~ 179 (357)
T 4g56_B 123 LEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKA-----------------------VLKSYNA 179 (357)
T ss_dssp ------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTE-----------------------EEEEECC
T ss_pred cccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc-----------------------EEEEEcC
Confidence 8876543 344799999999999999999999999999999998877 6788899
Q ss_pred CCCCeEEEEEecCCC-EEEEeeCCCcEEEEEccCCeEEEEEeC-CCCCceeeEEEccC-CcEEEEECCCCeEEEEEeCC-
Q 040361 240 HDDIITCLYVSVELD-IVISGSKDGTCVFHTLREGRYVRSLCH-PSGSALSKLAASRH-GRIVLYGDDDLSLHLFSING- 315 (413)
Q Consensus 240 h~~~i~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~~- 315 (413)
|...|++++|++++. ++++++.||.|++||+++++....+.. .+...+.+++|+|+ +.++++++.|+.|++||++.
T Consensus 180 h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~ 259 (357)
T 4g56_B 180 HSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP 259 (357)
T ss_dssp CSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG
T ss_pred CCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCC
Confidence 999999999999875 789999999999999999887766543 23457899999997 57889999999999999984
Q ss_pred ceeee-eecCCceeEEEecCCC-CEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEcc-CCe-EEEEcCCCeEEE
Q 040361 316 KHLAS-SESNGRLNCLELSACG-QFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTP-EEC-FLAGTKDGCLLV 391 (413)
Q Consensus 316 ~~~~~-~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~-~l~~~~dg~i~v 391 (413)
+.+.. ..+...|++++|+|++ ++|++|+.||.|+|||+++++++..+ +|.+.|++++|+| ++. +++++.||+|++
T Consensus 260 ~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~i 338 (357)
T 4g56_B 260 DSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLH 338 (357)
T ss_dssp GGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEE
T ss_pred cEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEE
Confidence 33333 4578899999999987 68999999999999999998887655 7999999999998 565 557999999999
Q ss_pred EEecCC
Q 040361 392 YSIENR 397 (413)
Q Consensus 392 w~~~~~ 397 (413)
|++.+.
T Consensus 339 W~~~~~ 344 (357)
T 4g56_B 339 HHLPSE 344 (357)
T ss_dssp EECC--
T ss_pred EECCCC
Confidence 999764
No 9
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.6e-42 Score=307.42 Aligned_cols=287 Identities=16% Similarity=0.151 Sum_probs=227.5
Q ss_pred cCCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCC--cEE
Q 040361 92 TQLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDG--RVV 169 (413)
Q Consensus 92 ~~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~--~~~ 169 (413)
.+|+|+|++|++|+.|+.+++|+....... ........|...+.++.|+|++++|++ |+.|+.+++|++..+ +.+
T Consensus 22 l~~sp~g~~las~~~D~~i~iw~~~~~~~~--~~~~~~~~h~~~v~~~~~sp~g~~l~s-~s~D~~v~iw~~~~~~~~~~ 98 (345)
T 3fm0_A 22 LAWNPAGTLLASCGGDRRIRIWGTEGDSWI--CKSVLSEGHQRTVRKVAWSPCGNYLAS-ASFDATTCIWKKNQDDFECV 98 (345)
T ss_dssp EEECTTSSCEEEEETTSCEEEEEEETTEEE--EEEEECSSCSSCEEEEEECTTSSEEEE-EETTSCEEEEEECCC-EEEE
T ss_pred EEECCCCCEEEEEcCCCeEEEEEcCCCcce--eeeeeccccCCcEEEEEECCCCCEEEE-EECCCcEEEEEccCCCeEEE
Confidence 357999999999999999999753211100 000111245678999999999998877 455999999999876 457
Q ss_pred EEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEE
Q 040361 170 QSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYV 249 (413)
Q Consensus 170 ~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~ 249 (413)
..+.+|...|.+++|+|++++|++|+.|++|++||+.+.... ..+..+.+|...|.+++|
T Consensus 99 ~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~--------------------~~~~~~~~h~~~v~~~~~ 158 (345)
T 3fm0_A 99 TTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEY--------------------ECVSVLNSHTQDVKHVVW 158 (345)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCE--------------------EEEEEECCCCSCEEEEEE
T ss_pred EEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCe--------------------EEEEEecCcCCCeEEEEE
Confidence 788999999999999999999999999999999999765410 135667899999999999
Q ss_pred ecCCCEEEEeeCCCcEEEEEccCCeE--EEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCC--c---------
Q 040361 250 SVELDIVISGSKDGTCVFHTLREGRY--VRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSING--K--------- 316 (413)
Q Consensus 250 ~~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~--~--------- 316 (413)
+|++++|++++.|+.|++||+++++. ...+..+ ...|.+++|+|++++|++++.|++|++||... .
T Consensus 159 ~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h-~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~ 237 (345)
T 3fm0_A 159 HPSQELLASASYDDTVKLYREEEDDWVCCATLEGH-ESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGS 237 (345)
T ss_dssp CSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCC-SSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC--
T ss_pred CCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCC-CCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeecc
Confidence 99999999999999999999988864 3556555 56899999999999999999999999999731 1
Q ss_pred -----eeee--eecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCc---------eEEEecCCCCcEEEEEEccCC--
Q 040361 317 -----HLAS--SESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLE---------VVRRYSGVGKIITSLAVTPEE-- 378 (413)
Q Consensus 317 -----~~~~--~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~---------~~~~~~~~~~~v~~~~~~~~~-- 378 (413)
.+.. ..|...|.+++|+|++..|++++.|+.|++|+..... ......+|...|++++|+|++
T Consensus 238 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~ 317 (345)
T 3fm0_A 238 DPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPG 317 (345)
T ss_dssp -CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTT
T ss_pred CCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCce
Confidence 0111 1267789999999999999999999999999987542 112345899999999999985
Q ss_pred eEEEEcCCCeEEEEEecCCccccc
Q 040361 379 CFLAGTKDGCLLVYSIENRRTSLP 402 (413)
Q Consensus 379 ~~l~~~~dg~i~vw~~~~~~~~~~ 402 (413)
.+++|+.||.|++|++.+++...+
T Consensus 318 ~laS~s~Dg~v~~W~~~~~~~~~~ 341 (345)
T 3fm0_A 318 LLASCSDDGEVAFWKYQRPEGLHH 341 (345)
T ss_dssp EEEEEETTSCEEEEEECC------
T ss_pred EEEEcCCCCcEEEEEecCCCCccc
Confidence 455799999999999998876543
No 10
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.5e-41 Score=297.22 Aligned_cols=245 Identities=14% Similarity=0.158 Sum_probs=216.9
Q ss_pred eecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccc
Q 040361 131 ELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARA 210 (413)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~ 210 (413)
.|...+.++.|+|+++.+++++ .||.|++||+.+++.+..+..|...|.+++|+|++++|++|+.|++|++||+.+++
T Consensus 11 ~h~~~V~~~~fsp~~~~l~s~~-~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~- 88 (304)
T 2ynn_A 11 NRSDRVKGIDFHPTEPWVLTTL-YSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE- 88 (304)
T ss_dssp EECSCEEEEEECSSSSEEEEEE-TTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC-
T ss_pred CCCCceEEEEECCCCCEEEEEc-CCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCc-
Confidence 4567899999999999888755 59999999999999999999999999999999999999999999999999998887
Q ss_pred cccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeE-EEEEeCCCCCceee
Q 040361 211 PEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRY-VRSLCHPSGSALSK 289 (413)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~~v~~ 289 (413)
.+..+.+|...|.+++|+|+++++++|+.|++|++||++++.. ...+..+ ...|.+
T Consensus 89 ----------------------~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h-~~~v~~ 145 (304)
T 2ynn_A 89 ----------------------KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGH-EHFVMC 145 (304)
T ss_dssp ----------------------EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCC-CSCEEE
T ss_pred ----------------------EEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhccc-CCcEEE
Confidence 6788899999999999999999999999999999999998744 4455544 568999
Q ss_pred EEEcc-CCcEEEEECCCCeEEEEEeCCce-ee--eeecCCceeEEEecC--CCCEEEEeCCCCeEEEEECCCCceEEEec
Q 040361 290 LAASR-HGRIVLYGDDDLSLHLFSINGKH-LA--SSESNGRLNCLELSA--CGQFLVCGGDQGQIVVRSMNSLEVVRRYS 363 (413)
Q Consensus 290 ~~~~~-~~~~l~~~~~d~~i~i~d~~~~~-~~--~~~~~~~i~~~~~s~--~~~~l~~~~~dg~i~v~d~~~~~~~~~~~ 363 (413)
++|+| ++..+++++.|+.|++||++... .. ...+...+..+.|+| ++.+|++|+.|+.|++||+++++++..+.
T Consensus 146 v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~ 225 (304)
T 2ynn_A 146 VAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE 225 (304)
T ss_dssp EEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred EEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeC
Confidence 99999 67899999999999999997322 22 234567888999986 67899999999999999999999999999
Q ss_pred CCCCcEEEEEEccCCeEE-EEcCCCeEEEEEecCCccc
Q 040361 364 GVGKIITSLAVTPEECFL-AGTKDGCLLVYSIENRRTS 400 (413)
Q Consensus 364 ~~~~~v~~~~~~~~~~~l-~~~~dg~i~vw~~~~~~~~ 400 (413)
+|...|.+++|+|++.++ +|+.||.|++||+.+++..
T Consensus 226 ~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~ 263 (304)
T 2ynn_A 226 GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVE 263 (304)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEE
T ss_pred CCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCcee
Confidence 999999999999997655 6999999999999987654
No 11
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=4.9e-42 Score=306.54 Aligned_cols=272 Identities=19% Similarity=0.223 Sum_probs=231.1
Q ss_pred cCCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCC-----
Q 040361 92 TQLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDG----- 166 (413)
Q Consensus 92 ~~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~----- 166 (413)
.+|+|++.++++|+.|+.+++|+...... ......+...+.++.|+|++..++++ +.|+.+++|++...
T Consensus 70 ~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~-----~~~~~~~~~~v~~~~~sp~g~~lasg-~~d~~i~v~~~~~~~~~~~ 143 (354)
T 2pbi_B 70 MDWCKDKRRIVSSSQDGKVIVWDSFTTNK-----EHAVTMPCTWVMACAYAPSGCAIACG-GLDNKCSVYPLTFDKNENM 143 (354)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCE-----EEEEECSSSCCCEEEECTTSSEEEEE-STTSEEEEEECCCCTTCCS
T ss_pred EEECCCCCEEEEEeCCCeEEEEECCCCCc-----ceEEecCCCCEEEEEECCCCCEEEEe-eCCCCEEEEEEeccccccc
Confidence 45689999999999999999975321111 11111234567889999999988775 45999999998643
Q ss_pred -cEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeE
Q 040361 167 -RVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIIT 245 (413)
Q Consensus 167 -~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 245 (413)
.....+.+|...|.+++|+|++..|++++.|++|++||+++++ .+..+.+|...|.
T Consensus 144 ~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~-----------------------~~~~~~~h~~~v~ 200 (354)
T 2pbi_B 144 AAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQ-----------------------LLQSFHGHGADVL 200 (354)
T ss_dssp GGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC-----------------------EEEEEECCSSCEE
T ss_pred cccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCe-----------------------EEEEEcCCCCCeE
Confidence 3456777899999999999999999999999999999998887 6788899999999
Q ss_pred EEEEec--CCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCce-eeeee
Q 040361 246 CLYVSV--ELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKH-LASSE 322 (413)
Q Consensus 246 ~~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~ 322 (413)
+++|+| ++++|++|+.||.|++||+++++.+..+..+ ...|.+++|+|++.+|++++.|+.|++||++... +....
T Consensus 201 ~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h-~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~ 279 (354)
T 2pbi_B 201 CLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETH-ESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYS 279 (354)
T ss_dssp EEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred EEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEc
Confidence 999987 5689999999999999999999999888766 4589999999999999999999999999998543 33332
Q ss_pred ---cCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEccCCeEE-EEcCCCeEEEEE
Q 040361 323 ---SNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFL-AGTKDGCLLVYS 393 (413)
Q Consensus 323 ---~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~dg~i~vw~ 393 (413)
+...+.+++|+|++++|++|+.|+.|++||+.+++.+..+.+|...|++++|+|++.++ +|+.||.|++|+
T Consensus 280 ~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 280 KESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp CTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 23468899999999999999999999999999999999999999999999999998655 699999999995
No 12
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.1e-41 Score=324.26 Aligned_cols=311 Identities=14% Similarity=0.127 Sum_probs=254.3
Q ss_pred CCCCCCeEEEEeecCCcEEEEecCceEEEEEe-------eccCCCCCCceeeecCCCCccccCCCcCCCcccCCCCc-cc
Q 040361 58 TRHQPSGIVYVGMLDSSIVLVNQGLTLSVKMW-------LTTQLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLA-ES 129 (413)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~-~~ 129 (413)
.+.|++..++.+. ++.+.+|+.......+.+ ...+|||+|+++++|+.|+.+++|+..... .... ..
T Consensus 25 ~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~----~~~~~~~ 99 (611)
T 1nr0_A 25 GNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTT----HILKTTI 99 (611)
T ss_dssp EECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTT----CCEEEEE
T ss_pred eeCCCCCEEEeCC-CCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCc----ceeeEee
Confidence 3567777777766 468999986543222222 234689999999999999999997532111 1111 12
Q ss_pred ceecceeEEEEecCCCCEEEEeecCC---CeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCC-EEEEccCCCcEEEEEe
Q 040361 130 FELGSQCFTTMQTPSENFLITCGNWE---NSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGS-ILATGSYDTTVMVWEV 205 (413)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~l~~~g~~d---~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~dg~i~iw~~ 205 (413)
..+...+.++.|+|+++.+++++..+ +.|++|| .++....+.+|...|.+++|+|++. .|++|+.|++|++||.
T Consensus 100 ~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~ 177 (611)
T 1nr0_A 100 PVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEG 177 (611)
T ss_dssp ECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEET
T ss_pred cccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEEC
Confidence 23467899999999999999877532 3677776 5677778899999999999999987 6999999999999998
Q ss_pred ccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeC----
Q 040361 206 IRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCH---- 281 (413)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~---- 281 (413)
.+.+ ....+.+|...|.+++|+|++++|++|+.|++|++||+.+++.+..+..
T Consensus 178 ~~~~-----------------------~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~ 234 (611)
T 1nr0_A 178 PPFK-----------------------FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLK 234 (611)
T ss_dssp TTBE-----------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSS
T ss_pred CCCe-----------------------EeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeecccccc
Confidence 7665 5677899999999999999999999999999999999999998888742
Q ss_pred --CCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCc-eee---------------------------------------
Q 040361 282 --PSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGK-HLA--------------------------------------- 319 (413)
Q Consensus 282 --~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~--------------------------------------- 319 (413)
.+...|.+++|+|++++|++++.|++|++||++.. .+.
T Consensus 235 ~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~ 314 (611)
T 1nr0_A 235 NVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELG 314 (611)
T ss_dssp SCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTT
T ss_pred ccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCC
Confidence 34568999999999999999999999999998732 211
Q ss_pred -----eeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEe-cCCCCcEEEEEEccCCeEEEEcCCCeEEEEE
Q 040361 320 -----SSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRY-SGVGKIITSLAVTPEECFLAGTKDGCLLVYS 393 (413)
Q Consensus 320 -----~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~dg~i~vw~ 393 (413)
...|...|.+++|+|+|++|++++.|+.|++||+.+++....+ .+|...|.+++|++++.+++++.|+.+++|+
T Consensus 315 ~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~ 394 (611)
T 1nr0_A 315 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVP 394 (611)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEEC
T ss_pred CcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEee
Confidence 1246778999999999999999999999999999998887766 5799999999999999999999999999999
Q ss_pred ecCCc
Q 040361 394 IENRR 398 (413)
Q Consensus 394 ~~~~~ 398 (413)
+.++.
T Consensus 395 ~~~~~ 399 (611)
T 1nr0_A 395 AGGSG 399 (611)
T ss_dssp SSSSS
T ss_pred cCCcc
Confidence 87654
No 13
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=9.5e-41 Score=318.47 Aligned_cols=305 Identities=17% Similarity=0.247 Sum_probs=257.1
Q ss_pred EEecCCCCCCeEEEEeecCCcEEEEecCceEEEEEe------eccCCCCCCceeeecCCCCccccCCCcCCCcccCCCCc
Q 040361 54 IICSTRHQPSGIVYVGMLDSSIVLVNQGLTLSVKMW------LTTQLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLA 127 (413)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~ 127 (413)
+....+.+++..++++..++.+.+|+........+- ....++|++.++++++.|+.+++|+.... .+.
T Consensus 265 v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~------~~~ 338 (577)
T 2ymu_A 265 VNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ------HLQ 338 (577)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC------EEE
T ss_pred EEEEEEcCCCCEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC------eeE
Confidence 344456778888999999999999986543222111 12358999999999999999999753211 112
Q ss_pred ccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEecc
Q 040361 128 ESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIR 207 (413)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~ 207 (413)
....+...+.+++++|+++.+++ |+.|+.|++||. +++.+..+.+|...|.+++|+|++++|++++.|+.|++||..
T Consensus 339 ~~~~~~~~v~~~~~s~~g~~l~~-~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~- 415 (577)
T 2ymu_A 339 TLTGHSSSVWGVAFSPDGQTIAS-ASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN- 415 (577)
T ss_dssp EECCCSSCEEEEEECTTSSEEEE-EETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-
T ss_pred EEeCCCCCEEEEEECCCCCEEEE-EeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-
Confidence 22334677888999999998877 555999999995 678889999999999999999999999999999999999953
Q ss_pred ccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCce
Q 040361 208 ARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSAL 287 (413)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v 287 (413)
++ .+..+.+|...|++++|+|++++|++++.|+.|++||+ +++.+..+..+ ...|
T Consensus 416 ~~-----------------------~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~-~~~v 470 (577)
T 2ymu_A 416 GQ-----------------------LLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGH-SSSV 470 (577)
T ss_dssp CC-----------------------EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECC-SSCE
T ss_pred CC-----------------------EEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCC-CCCE
Confidence 33 46778899999999999999999999999999999996 66777777765 4589
Q ss_pred eeEEEccCCcEEEEECCCCeEEEEEeCCceeee-eecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCC
Q 040361 288 SKLAASRHGRIVLYGDDDLSLHLFSINGKHLAS-SESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVG 366 (413)
Q Consensus 288 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~ 366 (413)
.+++|+|++++|++++.|+.|++||..++.+.. ..|...|++++|+|+|++|++++.||.|++||. +++.+..+.+|.
T Consensus 471 ~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~ 549 (577)
T 2ymu_A 471 RGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS 549 (577)
T ss_dssp EEEEECTTSCEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCS
T ss_pred EEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCC
Confidence 999999999999999999999999988776665 468899999999999999999999999999995 678899999999
Q ss_pred CcEEEEEEccCCeEE-EEcCCCeEEEEE
Q 040361 367 KIITSLAVTPEECFL-AGTKDGCLLVYS 393 (413)
Q Consensus 367 ~~v~~~~~~~~~~~l-~~~~dg~i~vw~ 393 (413)
+.|++++|+||+++| +++.|++|++||
T Consensus 550 ~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 550 SSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp SCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 999999999998655 699999999997
No 14
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.5e-40 Score=290.76 Aligned_cols=274 Identities=17% Similarity=0.341 Sum_probs=231.8
Q ss_pred CCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEe
Q 040361 93 QLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSI 172 (413)
Q Consensus 93 ~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~ 172 (413)
.|+|+++++++++.|+.+++|+.... ........+...+.++.|+|+++.+++++ .|+.|++||+.+++.+..+
T Consensus 30 ~~s~~~~~l~s~~~dg~i~iw~~~~~-----~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~d~~i~vwd~~~~~~~~~~ 103 (312)
T 4ery_A 30 KFSPNGEWLASSSADKLIKIWGAYDG-----KFEKTISGHKLGISDVAWSSDSNLLVSAS-DDKTLKIWDVSSGKCLKTL 103 (312)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTC-----CEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTCCEEEEE
T ss_pred EECCCCCEEEEeeCCCeEEEEeCCCc-----ccchhhccCCCceEEEEEcCCCCEEEEEC-CCCEEEEEECCCCcEEEEE
Confidence 46889999999999999999743211 11112223566788999999998887755 5999999999999999999
Q ss_pred ecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecC
Q 040361 173 RQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVE 252 (413)
Q Consensus 173 ~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~ 252 (413)
.+|...|.+++|+|++++|++|+.|+.|++||+++++ .+..+..|...|.+++|+|+
T Consensus 104 ~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-----------------------~~~~~~~~~~~v~~~~~~~~ 160 (312)
T 4ery_A 104 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-----------------------CLKTLPAHSDPVSAVHFNRD 160 (312)
T ss_dssp ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC-----------------------EEEEECCCSSCEEEEEECTT
T ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCE-----------------------EEEEecCCCCcEEEEEEcCC
Confidence 9999999999999999999999999999999998876 57778899999999999999
Q ss_pred CCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCce-eeee-ecCCc---e
Q 040361 253 LDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKH-LASS-ESNGR---L 327 (413)
Q Consensus 253 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~-~~~~~---i 327 (413)
++++++++.||.|++||+++++.+..+.......+..++|+|+++++++++.|+.|++||++... +... .+... +
T Consensus 161 ~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 240 (312)
T 4ery_A 161 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 240 (312)
T ss_dssp SSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCC
T ss_pred CCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEE
Confidence 99999999999999999999998888866656789999999999999999999999999998543 3332 23332 2
Q ss_pred eEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEccCCeEEE-Ec--CCCeEEEEEec
Q 040361 328 NCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFLA-GT--KDGCLLVYSIE 395 (413)
Q Consensus 328 ~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~--~dg~i~vw~~~ 395 (413)
......+++.+|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++.+++ ++ .|+.|++|+.+
T Consensus 241 ~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 241 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 2333346789999999999999999999999999999999999999999987664 54 69999999975
No 15
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=4.1e-41 Score=306.72 Aligned_cols=246 Identities=17% Similarity=0.310 Sum_probs=222.8
Q ss_pred ceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEecccc
Q 040361 130 FELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRAR 209 (413)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~ 209 (413)
..|...+.++.|+|++..+++ |+.|+.|++||+.+++....+.+|.+.|.+++|+|++++|++|+.|++|++||+.+.+
T Consensus 105 ~gh~~~V~~~~~~p~~~~l~s-~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~ 183 (410)
T 1vyh_C 105 SGHRSPVTRVIFHPVFSVMVS-ASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFE 183 (410)
T ss_dssp ECCSSCEEEEEECSSSSEEEE-EESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSC
T ss_pred cccCCcEEEEEEcCCCCEEEE-EeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Confidence 346778999999999987776 5559999999999999999999999999999999999999999999999999998776
Q ss_pred ccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceee
Q 040361 210 APEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSK 289 (413)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~ 289 (413)
.+..+.+|...|.+++|+|+++++++|+.|+.|++||++++.++..+..+ ...+..
T Consensus 184 -----------------------~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h-~~~v~~ 239 (410)
T 1vyh_C 184 -----------------------CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGH-REWVRM 239 (410)
T ss_dssp -----------------------EEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECC-SSCEEE
T ss_pred -----------------------eeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCC-CccEEE
Confidence 67788899999999999999999999999999999999999999998876 458999
Q ss_pred EEEccCCcEEEEECCCCeEEEEEeCCcee-ee-eecCCceeEEEecCC--------------------CCEEEEeCCCCe
Q 040361 290 LAASRHGRIVLYGDDDLSLHLFSINGKHL-AS-SESNGRLNCLELSAC--------------------GQFLVCGGDQGQ 347 (413)
Q Consensus 290 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~-~~~~~~i~~~~~s~~--------------------~~~l~~~~~dg~ 347 (413)
+.+++++.++++++.|+.|++||++.... .. ..|...|.+++|+|+ |.+|++|+.||.
T Consensus 240 ~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~ 319 (410)
T 1vyh_C 240 VRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT 319 (410)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSE
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCe
Confidence 99999999999999999999999984433 32 468889999999996 679999999999
Q ss_pred EEEEECCCCceEEEecCCCCcEEEEEEccCCeEE-EEcCCCeEEEEEecCCccc
Q 040361 348 IVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFL-AGTKDGCLLVYSIENRRTS 400 (413)
Q Consensus 348 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~dg~i~vw~~~~~~~~ 400 (413)
|++||+.+++++..+.+|...|.+++|+|++.++ +|+.||.|++||+.+++..
T Consensus 320 i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~ 373 (410)
T 1vyh_C 320 IKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCM 373 (410)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCC
T ss_pred EEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceE
Confidence 9999999999999999999999999999997654 7999999999999887644
No 16
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.3e-40 Score=300.22 Aligned_cols=282 Identities=17% Similarity=0.215 Sum_probs=227.9
Q ss_pred ccCCCCCCceeeecCCCCccccCCCcCCCc--ccCCCCc-----------ccceecceeEEEEecCCCCEEEEeecCCCe
Q 040361 91 TTQLQSGGNFTFSGSQDPFFGVGADILSPR--NVGSPLA-----------ESFELGSQCFTTMQTPSENFLITCGNWENS 157 (413)
Q Consensus 91 ~~~~s~~~~~l~~~~~d~~~~~~~~~~~~~--~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~ 157 (413)
...|+|+|+++++|+ ++.+++|+...... .+..... ........+.++.|+|+++++++ |+.|+.
T Consensus 69 ~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s-~~~d~~ 146 (393)
T 1erj_A 69 CVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT-GAEDRL 146 (393)
T ss_dssp EEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE-EETTSC
T ss_pred EEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE-EcCCCe
Confidence 346899999999987 67788864321110 0000000 00011224788999999998877 455999
Q ss_pred EEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeee
Q 040361 158 FQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHIL 237 (413)
Q Consensus 158 i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (413)
|++||+.+++.+..+.+|...|.+++|+|++++|++|+.|++|++||+.+++ ....+
T Consensus 147 i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~-----------------------~~~~~ 203 (393)
T 1erj_A 147 IRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ-----------------------CSLTL 203 (393)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-----------------------EEEEE
T ss_pred EEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCe-----------------------eEEEE
Confidence 9999999999999999999999999999999999999999999999998876 33333
Q ss_pred ecCCCCeEEEEEec-CCCEEEEeeCCCcEEEEEccCCeEEEEEe------CCCCCceeeEEEccCCcEEEEECCCCeEEE
Q 040361 238 CGHDDIITCLYVSV-ELDIVISGSKDGTCVFHTLREGRYVRSLC------HPSGSALSKLAASRHGRIVLYGDDDLSLHL 310 (413)
Q Consensus 238 ~~h~~~i~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 310 (413)
.+...+.+++|+| +++++++|+.|+.|++||+++++.+..+. ..+...|.+++|+|++++|++++.|+.|++
T Consensus 204 -~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~ 282 (393)
T 1erj_A 204 -SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKL 282 (393)
T ss_dssp -ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred -EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence 3667899999999 89999999999999999999998887763 223568999999999999999999999999
Q ss_pred EEeCCce--------------eeeeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEcc
Q 040361 311 FSINGKH--------------LASSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTP 376 (413)
Q Consensus 311 ~d~~~~~--------------~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~ 376 (413)
||++... .....|...|.+++|+|++++|++|+.||.|++||..+++.+..+.+|...|.+++|++
T Consensus 283 wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~ 362 (393)
T 1erj_A 283 WNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVAN 362 (393)
T ss_dssp EEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECS
T ss_pred EECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecC
Confidence 9996321 12246788899999999999999999999999999999999999999999999999986
Q ss_pred ------CCeE-EEEcCCCeEEEEEecCCc
Q 040361 377 ------EECF-LAGTKDGCLLVYSIENRR 398 (413)
Q Consensus 377 ------~~~~-l~~~~dg~i~vw~~~~~~ 398 (413)
++.+ ++|+.||+|++|++.+.+
T Consensus 363 ~~~~~p~~~~l~sgs~Dg~i~iW~~~~~~ 391 (393)
T 1erj_A 363 GSSLGPEYNVFATGSGDCKARIWKYKKIA 391 (393)
T ss_dssp SCTTCTTCEEEEEEETTSEEEEEEEEEC-
T ss_pred CcCcCCCCCEEEEECCCCcEEECcccccC
Confidence 5554 469999999999997643
No 17
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.2e-40 Score=296.57 Aligned_cols=278 Identities=17% Similarity=0.212 Sum_probs=221.9
Q ss_pred CCCceeeecCCCCccccCCCcCCCcc--cCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEee
Q 040361 96 SGGNFTFSGSQDPFFGVGADILSPRN--VGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIR 173 (413)
Q Consensus 96 ~~~~~l~~~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~ 173 (413)
+++++|++|+.|+++++|+....... ...+......|...+.++.|+|++.++++ |+.|+.|++||+.+++.+..+.
T Consensus 37 ~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s-~s~D~~v~lwd~~~~~~~~~~~ 115 (343)
T 2xzm_R 37 EDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAIS-SSWDKTLRLWDLRTGTTYKRFV 115 (343)
T ss_dssp CCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEE-EETTSEEEEEETTSSCEEEEEE
T ss_pred CCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEE-EcCCCcEEEEECCCCcEEEEEc
Confidence 38899999999999999753211100 11112222345677899999999988776 5559999999999999999999
Q ss_pred cCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCC
Q 040361 174 QHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVEL 253 (413)
Q Consensus 174 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~ 253 (413)
+|...|.+++|+|++++|++|+.|++|++||+...... ......+|...|.+++|+|++
T Consensus 116 ~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~---------------------~~~~~~~~~~~v~~~~~~~~~ 174 (343)
T 2xzm_R 116 GHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKF---------------------SSAEKENHSDWVSCVRYSPIM 174 (343)
T ss_dssp CCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEE---------------------ECCTTTSCSSCEEEEEECCCC
T ss_pred CCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCcee---------------------eeecccCCCceeeeeeecccc
Confidence 99999999999999999999999999999998633200 011123788999999999986
Q ss_pred ----------CEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeC-C-ceeeee
Q 040361 254 ----------DIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSIN-G-KHLASS 321 (413)
Q Consensus 254 ----------~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~-~~~~~~ 321 (413)
.++++++.|+.|++||. +.+....+..+ ...|.+++|+|++++|++++.|+.|++||+. . ......
T Consensus 175 ~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h-~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~ 252 (343)
T 2xzm_R 175 KSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAH-ESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREF 252 (343)
T ss_dssp CSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECC-SSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEE
T ss_pred ccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCc-cccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceee
Confidence 78999999999999994 56667777665 4589999999999999999999999999994 2 233334
Q ss_pred ecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEE--Eec-----------CCCCcEEEEEEccCCeEE-EEcCCC
Q 040361 322 ESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVR--RYS-----------GVGKIITSLAVTPEECFL-AGTKDG 387 (413)
Q Consensus 322 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~--~~~-----------~~~~~v~~~~~~~~~~~l-~~~~dg 387 (413)
.+...|.+++|+|++.+++++ .|+.|++||+.+++... .+. +|...|.+++|+|++.+| +|+.||
T Consensus 253 ~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg 331 (343)
T 2xzm_R 253 DAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDG 331 (343)
T ss_dssp ECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTS
T ss_pred cCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCc
Confidence 466789999999999988766 57789999998766443 333 678889999999998655 699999
Q ss_pred eEEEEEecCCc
Q 040361 388 CLLVYSIENRR 398 (413)
Q Consensus 388 ~i~vw~~~~~~ 398 (413)
.|++|++++++
T Consensus 332 ~v~~w~~~~g~ 342 (343)
T 2xzm_R 332 VIRTFSFETSA 342 (343)
T ss_dssp EEEEEEEEEEE
T ss_pred eEEEEEEEccC
Confidence 99999998764
No 18
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=4.7e-40 Score=292.03 Aligned_cols=314 Identities=13% Similarity=0.158 Sum_probs=254.3
Q ss_pred EEecCCCCCCeEEEEeecCCcEEEEecCceEEEEEe-------eccCCCCCCceeeecCCCCccccCCCcCCCcccCCCC
Q 040361 54 IICSTRHQPSGIVYVGMLDSSIVLVNQGLTLSVKMW-------LTTQLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPL 126 (413)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~ 126 (413)
+....+.+++..++++..++.++.|........... ....|+|+++++++++ |+.+++|+............
T Consensus 12 v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~ 90 (337)
T 1gxr_A 12 AYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQ 90 (337)
T ss_dssp CCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEE
T ss_pred eeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeec
Confidence 344566778888877776666655543333222211 1235899999999999 99999975332211111111
Q ss_pred cccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCc--EEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEE
Q 040361 127 AESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGR--VVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWE 204 (413)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~ 204 (413)
.....+...+.++.|+|+++.+++++ .|+.|++||+.+++ ....+..|...|.+++|+|++++|++++.||.|++||
T Consensus 91 ~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d 169 (337)
T 1gxr_A 91 LDCLNRDNYIRSCKLLPDGCTLIVGG-EASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWD 169 (337)
T ss_dssp EECSCTTSBEEEEEECTTSSEEEEEE-SSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ccccCCCCcEEEEEEcCCCCEEEEEc-CCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEe
Confidence 11114567889999999998887755 59999999999887 6677888999999999999999999999999999999
Q ss_pred eccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCC
Q 040361 205 VIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSG 284 (413)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 284 (413)
+.+++ .+..+..|...|.+++|+|+++++++++.||.|++||+++++.+..+.. .
T Consensus 170 ~~~~~-----------------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~--~ 224 (337)
T 1gxr_A 170 LHNQT-----------------------LVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDF--T 224 (337)
T ss_dssp TTTTE-----------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC--S
T ss_pred CCCCc-----------------------eeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecC--C
Confidence 98876 5777888999999999999999999999999999999999998888764 3
Q ss_pred CceeeEEEccCCcEEEEECCCCeEEEEEeCCcee-eeeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEec
Q 040361 285 SALSKLAASRHGRIVLYGDDDLSLHLFSINGKHL-ASSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYS 363 (413)
Q Consensus 285 ~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~ 363 (413)
..+.+++|+|+++++++++.++.|++||++.... ....+...+.+++|+|++++|++++.||.|++||+.+++.+...
T Consensus 225 ~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~- 303 (337)
T 1gxr_A 225 SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS- 303 (337)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-
T ss_pred CceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-
Confidence 4799999999999999999999999999985443 34568889999999999999999999999999999999888555
Q ss_pred CCCCcEEEEEEccCCeEE-EEcCCCeEEEEEec
Q 040361 364 GVGKIITSLAVTPEECFL-AGTKDGCLLVYSIE 395 (413)
Q Consensus 364 ~~~~~v~~~~~~~~~~~l-~~~~dg~i~vw~~~ 395 (413)
.|...|.+++|+|++.++ +++.||.|++|++.
T Consensus 304 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 304 KESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp ECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred cCCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence 478899999999998655 69999999999973
No 19
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.7e-41 Score=306.27 Aligned_cols=278 Identities=21% Similarity=0.263 Sum_probs=226.9
Q ss_pred cCCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCc----
Q 040361 92 TQLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGR---- 167 (413)
Q Consensus 92 ~~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~---- 167 (413)
..|+|+++++++|+.|+++++|+..... .......+...+.+++|+|++++++++ +.|+.+++|++.+..
T Consensus 72 ~~~sp~~~~l~s~s~D~~v~iWd~~~~~-----~~~~~~~h~~~v~~~~~s~~g~~las~-~~d~~v~iw~~~~~~~~~~ 145 (380)
T 3iz6_a 72 LDWTPEKNWIVSASQDGRLIVWNALTSQ-----KTHAIKLHCPWVMECAFAPNGQSVACG-GLDSACSIFNLSSQADRDG 145 (380)
T ss_dssp EEECTTSSCEEEEETTSEEEEEETTTTE-----EEEEEECCCTTCCCCEECTTSSEEEEC-CSSSCCEEEECCCCSSCCC
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCc-----cceEEecCCCCEEEEEECCCCCEEEEe-eCCCcEEEEECCCCccccC
Confidence 3468999999999999999997532111 111112245567888999999988775 459999999986532
Q ss_pred ---EEEEeecCCCeEEEEEECCC-CCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeee-----e
Q 040361 168 ---VVQSIRQHRDVVSCVAVTTD-GSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHIL-----C 238 (413)
Q Consensus 168 ---~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 238 (413)
....+.+|.+.|.++.|.|+ +..|++|+.|++|++||+.+++ .+..+ .
T Consensus 146 ~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~-----------------------~~~~~~~~~~~ 202 (380)
T 3iz6_a 146 NMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQ-----------------------RISIFGSEFPS 202 (380)
T ss_dssp SSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCC-----------------------EEEEECCCSSS
T ss_pred CccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCc-----------------------EEEEeecccCC
Confidence 34567899999999999996 5679999999999999998876 33333 5
Q ss_pred cCCCCeEEEEEec-CCCEEEEeeCCCcEEEEEcc-CCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCc
Q 040361 239 GHDDIITCLYVSV-ELDIVISGSKDGTCVFHTLR-EGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGK 316 (413)
Q Consensus 239 ~h~~~i~~~~~~~-~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 316 (413)
+|...|.+++|++ +++++++|+.|+.|++||++ .++.+..+..+ ...|.+++|+|++.+|++++.|++|++||++..
T Consensus 203 ~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h-~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~ 281 (380)
T 3iz6_a 203 GHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGH-EGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG 281 (380)
T ss_dssp SCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCC-SSCCCEEEECTTSSEEEEECSSSCEEEEETTTT
T ss_pred CCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCc-CCCeEEEEEecCCCeEEEEcCCCeEEEEECCCC
Confidence 7999999999987 78899999999999999998 45667777665 468999999999999999999999999999843
Q ss_pred -eeeeee--------cCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEe----cCCCCcEEEEEEccCCeEE-E
Q 040361 317 -HLASSE--------SNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRY----SGVGKIITSLAVTPEECFL-A 382 (413)
Q Consensus 317 -~~~~~~--------~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l-~ 382 (413)
.+.... +...+.+++|+|+|++|++|+.||.|++||+.+++.+..+ .+|.+.|++++|+|+|.+| +
T Consensus 282 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s 361 (380)
T 3iz6_a 282 HQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCT 361 (380)
T ss_dssp EEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEE
T ss_pred cEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEE
Confidence 333321 1124899999999999999999999999999999888777 5799999999999998665 6
Q ss_pred EcCCCeEEEEEecCCcc
Q 040361 383 GTKDGCLLVYSIENRRT 399 (413)
Q Consensus 383 ~~~dg~i~vw~~~~~~~ 399 (413)
|+.||+|++|++...+.
T Consensus 362 gs~D~~i~iW~~~~~~~ 378 (380)
T 3iz6_a 362 GSWDKNLKIWAFSGHRK 378 (380)
T ss_dssp ECTTSCEEEEECCSSSS
T ss_pred eeCCCCEEEEecCCCcc
Confidence 99999999999987643
No 20
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2e-40 Score=291.98 Aligned_cols=247 Identities=18% Similarity=0.258 Sum_probs=217.0
Q ss_pred ceecceeEEEEecCCC---CEEEEeecCCCeEEEEEcCCCcE--EEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEE
Q 040361 130 FELGSQCFTTMQTPSE---NFLITCGNWENSFQVIALNDGRV--VQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWE 204 (413)
Q Consensus 130 ~~~~~~~~~~~~~~~~---~~l~~~g~~d~~i~i~~~~~~~~--~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~ 204 (413)
..|...+.+++|++++ ..++++|+.|+.|+||++.+++. ...+.+|...|.+++|++++.++++++.|++|++||
T Consensus 29 ~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd 108 (321)
T 3ow8_A 29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWD 108 (321)
T ss_dssp TSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred ccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 3567889999998863 33556677799999999987654 456889999999999999999999999999999999
Q ss_pred eccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCC
Q 040361 205 VIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSG 284 (413)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 284 (413)
+.+++ .+..+..|...+.+++|+|++++|++++.||.|++||+++++....+..+ .
T Consensus 109 ~~~~~-----------------------~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~-~ 164 (321)
T 3ow8_A 109 LENGK-----------------------QIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTR-G 164 (321)
T ss_dssp TTTTE-----------------------EEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECS-S
T ss_pred CCCCC-----------------------EEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCC-C
Confidence 98877 57778889999999999999999999999999999999999998888765 4
Q ss_pred CceeeEEEccCCcEEEEECCCCeEEEEEeCCce-eee-eecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEe
Q 040361 285 SALSKLAASRHGRIVLYGDDDLSLHLFSINGKH-LAS-SESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRY 362 (413)
Q Consensus 285 ~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~ 362 (413)
..+.+++|+|++++|++++.|+.|++||++... +.. ..+...|.+++|+|++++|++|+.||.|++||+++++.+..+
T Consensus 165 ~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~ 244 (321)
T 3ow8_A 165 KFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTL 244 (321)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEE
T ss_pred ceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEE
Confidence 579999999999999999999999999998444 333 357889999999999999999999999999999999999999
Q ss_pred cCCCCcEEEEEEccCCeEE-EEcCCCeEEEEEecCCccc
Q 040361 363 SGVGKIITSLAVTPEECFL-AGTKDGCLLVYSIENRRTS 400 (413)
Q Consensus 363 ~~~~~~v~~~~~~~~~~~l-~~~~dg~i~vw~~~~~~~~ 400 (413)
.+|...|.+++|+|++.++ +++.|+.|++||+.+++..
T Consensus 245 ~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~ 283 (321)
T 3ow8_A 245 SGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCV 283 (321)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEE
Confidence 9999999999999997655 6999999999999987654
No 21
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.5e-39 Score=308.63 Aligned_cols=306 Identities=17% Similarity=0.230 Sum_probs=255.7
Q ss_pred EecCCCCCCeEEEEeecCCcEEEEecCceEEEEE------eeccCCCCCCceeeecCCCCccccCCCcCCCcccCCCCcc
Q 040361 55 ICSTRHQPSGIVYVGMLDSSIVLVNQGLTLSVKM------WLTTQLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAE 128 (413)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~ 128 (413)
.+..+.+++..++++..++.+.+|+........+ .....|+|++..+++++.|+.+++|+... .....
T Consensus 225 ~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~------~~~~~ 298 (577)
T 2ymu_A 225 RGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNG------QLLQT 298 (577)
T ss_dssp EEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS------CEEEE
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC------cEEEE
Confidence 3445677778888889999999998543322111 12235899999999999999999974221 11122
Q ss_pred cceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccc
Q 040361 129 SFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRA 208 (413)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~ 208 (413)
...+...+.+++++|+++.+++++ .|+.|++||.. ++.+..+.+|...|.+++|+|++++|++|+.|+.|++|+.. +
T Consensus 299 ~~~h~~~v~~~~~~~~~~~l~t~~-~d~~i~~w~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~-~ 375 (577)
T 2ymu_A 299 LTGHSSSVWGVAFSPDGQTIASAS-DDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-G 375 (577)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-C
T ss_pred EecCCCCeEEEEECCCCCEEEEEe-CCCeEEEEeCC-CCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC-C
Confidence 234567788999999999888755 49999999985 55667788999999999999999999999999999999953 3
Q ss_pred cccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCcee
Q 040361 209 RAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALS 288 (413)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~ 288 (413)
+ .+..+.+|...|++++|+|++++|++++.|+.|++||. +++.+..+..+ ...|.
T Consensus 376 ~-----------------------~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~-~~~v~ 430 (577)
T 2ymu_A 376 Q-----------------------LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH-SSSVW 430 (577)
T ss_dssp C-----------------------EEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECC-SSCEE
T ss_pred C-----------------------EEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCC-CCCeE
Confidence 3 46778899999999999999999999999999999995 67777777766 45899
Q ss_pred eEEEccCCcEEEEECCCCeEEEEEeCCceeee-eecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCC
Q 040361 289 KLAASRHGRIVLYGDDDLSLHLFSINGKHLAS-SESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGK 367 (413)
Q Consensus 289 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~ 367 (413)
+++|+|+++++++++.|+.|++||..++.+.. ..|...+.+++|+|++++|++++.|+.|++||. +++.+..+.+|..
T Consensus 431 ~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~ 509 (577)
T 2ymu_A 431 GVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSS 509 (577)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSS
T ss_pred EEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCC
Confidence 99999999999999999999999998776655 468899999999999999999999999999995 6788999999999
Q ss_pred cEEEEEEccCCeEE-EEcCCCeEEEEEec
Q 040361 368 IITSLAVTPEECFL-AGTKDGCLLVYSIE 395 (413)
Q Consensus 368 ~v~~~~~~~~~~~l-~~~~dg~i~vw~~~ 395 (413)
.|++++|+|++++| +++.||.|++||..
T Consensus 510 ~v~~l~~s~dg~~l~s~~~dg~v~lwd~~ 538 (577)
T 2ymu_A 510 SVRGVAFSPDGQTIASASDDKTVKLWNRN 538 (577)
T ss_dssp CEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred CEEEEEEcCCCCEEEEEECcCEEEEEeCC
Confidence 99999999998755 69999999999964
No 22
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-39 Score=288.53 Aligned_cols=278 Identities=18% Similarity=0.188 Sum_probs=210.6
Q ss_pred CCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCC-------C
Q 040361 94 LQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALND-------G 166 (413)
Q Consensus 94 ~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~-------~ 166 (413)
++|+ ++++|+.|+.+++|+...........+ ....|...+.++.|+|+++.+++ |+.|+.|+|||+.. .
T Consensus 22 ~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~-~~~~h~~~v~~v~~sp~~~~las-~s~D~~v~iw~~~~~~~~~~~~ 97 (330)
T 2hes_X 22 FSQG--ILATGSTDRKIKLVSVKYDDFTLIDVL-DETAHKKAIRSVAWRPHTSLLAA-GSFDSTVSIWAKEESADRTFEM 97 (330)
T ss_dssp EETT--EEEEEESSSCEEEEECSSSCCEEEEEE-CTTCCCSCEEEEEECTTSSEEEE-EETTSCEEEEEC-------CCC
T ss_pred cCCC--EEEEEcCCCEEEEEEecCCCeEEEEEE-ecCCccCCEEEEEECCCCCEEEE-EeCCCcEEEEEcccCcCccccc
Confidence 3454 889999999999975432211110000 01125678999999999987776 55599999999843 4
Q ss_pred cEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEE
Q 040361 167 RVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITC 246 (413)
Q Consensus 167 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 246 (413)
+.+..+.+|.+.|.+++|+|++++|++|+.|++|++||+...... ...+..+.+|...|.+
T Consensus 98 ~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~-------------------~~~~~~~~~h~~~v~~ 158 (330)
T 2hes_X 98 DLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEE-------------------YECISVLQEHSQDVKH 158 (330)
T ss_dssp EEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCC-------------------CEEEEEECCCSSCEEE
T ss_pred eeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCC-------------------eEEEEEeccCCCceEE
Confidence 567788999999999999999999999999999999999543210 0145678899999999
Q ss_pred EEEecCCCEEEEeeCCCcEEEEEccCC--eEEEEEeCCCCCceeeEEEccC--CcEEEEECCCCeEEEEEeCCc------
Q 040361 247 LYVSVELDIVISGSKDGTCVFHTLREG--RYVRSLCHPSGSALSKLAASRH--GRIVLYGDDDLSLHLFSINGK------ 316 (413)
Q Consensus 247 ~~~~~~~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~------ 316 (413)
++|+|++++|++|+.|++|++||+.++ +++..+..+ ...|.+++|+|+ +..+++++.|++|++||+++.
T Consensus 159 v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~ 237 (330)
T 2hes_X 159 VIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGH-EGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQ 237 (330)
T ss_dssp EEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCC-SSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCE
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCC-CCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccc
Confidence 999999999999999999999999877 566777665 458999999998 678999999999999999632
Q ss_pred ---eeeee--ecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCc--eEEE-ecCCCC-cEEEEEEcc--CCe-EEEEc
Q 040361 317 ---HLASS--ESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLE--VVRR-YSGVGK-IITSLAVTP--EEC-FLAGT 384 (413)
Q Consensus 317 ---~~~~~--~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~--~~~~-~~~~~~-~v~~~~~~~--~~~-~l~~~ 384 (413)
..... .|...|.+++|++++ +|++++.||.|++||..+++ .... +.+|.. .|.+++|+| ++. +++|+
T Consensus 238 ~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s 316 (330)
T 2hes_X 238 EWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGG 316 (330)
T ss_dssp EEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEE
T ss_pred eeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEec
Confidence 11222 277899999999665 88999999999999998764 3333 357876 899999999 565 55799
Q ss_pred CCCeEEEEEecC
Q 040361 385 KDGCLLVYSIEN 396 (413)
Q Consensus 385 ~dg~i~vw~~~~ 396 (413)
.||+|++|++++
T Consensus 317 ~Dg~v~~W~~~~ 328 (330)
T 2hes_X 317 DDGIVNFWSLEK 328 (330)
T ss_dssp TTSEEEEEEC--
T ss_pred CCCcEEEEEecc
Confidence 999999999875
No 23
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3.4e-38 Score=280.34 Aligned_cols=248 Identities=15% Similarity=0.217 Sum_probs=215.0
Q ss_pred eecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccc
Q 040361 131 ELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARA 210 (413)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~ 210 (413)
.|...+.++.|+|++++++++ +.||.|++||+.+++.+..+..|...|.+++|+|++++|++|+.|+.|++|++.+...
T Consensus 53 gH~~~v~~~~~s~d~~~l~s~-s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~ 131 (340)
T 1got_B 53 GHLAKIYAMHWGTDSRLLLSA-SQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREG 131 (340)
T ss_dssp CCSSCEEEEEECTTSSEEEEE-ETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSB
T ss_pred CCCCceEEEEECCCCCEEEEE-eCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCC
Confidence 346778999999999888774 4599999999999999999999999999999999999999999999999999976541
Q ss_pred cccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeE
Q 040361 211 PEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKL 290 (413)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~ 290 (413)
.. .....+.+|.+.|.++.|++++ .+++++.|+.|++||+++++.+..+..+ ...|.++
T Consensus 132 ~~-------------------~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h-~~~v~~~ 190 (340)
T 1got_B 132 NV-------------------RVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQQTTTFTGH-TGDVMSL 190 (340)
T ss_dssp SC-------------------EEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEE
T ss_pred cc-------------------eeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCcEEEEEcCC-CCceEEE
Confidence 11 1345678999999999999876 4889999999999999999999988876 4589999
Q ss_pred EEccCCcEEEEECCCCeEEEEEeCC-ceeee-eecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecC--CC
Q 040361 291 AASRHGRIVLYGDDDLSLHLFSING-KHLAS-SESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSG--VG 366 (413)
Q Consensus 291 ~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~--~~ 366 (413)
+|+|++.++++++.|+.|++||++. ..... ..|...|.+++|+|++++|++|+.||.|++||+++++.+..+.. +.
T Consensus 191 ~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~ 270 (340)
T 1got_B 191 SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNII 270 (340)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCC
T ss_pred EECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcc
Confidence 9999999999999999999999984 33333 45888999999999999999999999999999999888877652 33
Q ss_pred CcEEEEEEccCCeEE-EEcCCCeEEEEEecCCccc
Q 040361 367 KIITSLAVTPEECFL-AGTKDGCLLVYSIENRRTS 400 (413)
Q Consensus 367 ~~v~~~~~~~~~~~l-~~~~dg~i~vw~~~~~~~~ 400 (413)
..|.+++|+|++.++ +|+.||.|++||+.+++..
T Consensus 271 ~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~ 305 (340)
T 1got_B 271 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA 305 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred cceEEEEECCCCCEEEEECCCCeEEEEEcccCcEe
Confidence 579999999998766 6999999999999876543
No 24
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=8.7e-39 Score=288.54 Aligned_cols=283 Identities=15% Similarity=0.217 Sum_probs=232.2
Q ss_pred EEEecCCCCCCeEEEEeecCCcEEEEecCceEEEEEe-------eccCCCCCCceeeecCCCCccccCCCcCCCcc--cC
Q 040361 53 SIICSTRHQPSGIVYVGMLDSSIVLVNQGLTLSVKMW-------LTTQLQSGGNFTFSGSQDPFFGVGADILSPRN--VG 123 (413)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~s~~~~~l~~~~~d~~~~~~~~~~~~~~--~~ 123 (413)
.+.+..++|++..+++++.|+.+.+|+.......... ..+.|+|+|+++++|+.|+.+++|+....... ..
T Consensus 68 ~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~ 147 (380)
T 3iz6_a 68 KVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNM 147 (380)
T ss_dssp CEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSS
T ss_pred EEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCc
Confidence 3566678889999999999999999997665544433 24578999999999999999999864321111 11
Q ss_pred CCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEe-----ecCCCeEEEEEECC-CCCEEEEccCC
Q 040361 124 SPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSI-----RQHRDVVSCVAVTT-DGSILATGSYD 197 (413)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~-----~~h~~~v~~~~~~~-~~~~l~s~s~d 197 (413)
........|...+.++.|+|++...+++|+.|+.|++||+.+++.+..+ .+|...|.+++|++ ++++|++|+.|
T Consensus 148 ~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D 227 (380)
T 3iz6_a 148 PVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCD 227 (380)
T ss_dssp TTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETT
T ss_pred cceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECC
Confidence 1122233456678888899987766666778999999999999998887 67999999999987 88999999999
Q ss_pred CcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEE
Q 040361 198 TTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVR 277 (413)
Q Consensus 198 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 277 (413)
++|++||++... ..+..+.+|.+.|++++|+|++++|++|+.||+|++||+++++.+.
T Consensus 228 ~~v~~wd~~~~~----------------------~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~ 285 (380)
T 3iz6_a 228 TTVRLWDLRITS----------------------RAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQ 285 (380)
T ss_dssp SCEEEEETTTTC----------------------CCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEE
T ss_pred CeEEEEECCCCC----------------------cceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEE
Confidence 999999997443 1567788999999999999999999999999999999999999988
Q ss_pred EEeCCCC------CceeeEEEccCCcEEEEECCCCeEEEEEeCC-ceeee-----eecCCceeEEEecCCCCEEEEeCCC
Q 040361 278 SLCHPSG------SALSKLAASRHGRIVLYGDDDLSLHLFSING-KHLAS-----SESNGRLNCLELSACGQFLVCGGDQ 345 (413)
Q Consensus 278 ~~~~~~~------~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~-----~~~~~~i~~~~~s~~~~~l~~~~~d 345 (413)
.+..+.. ..+.+++|+|+++++++|+.||.|++||+.. +.+.. ..|.+.|.+++|+|+|++|++|+.|
T Consensus 286 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D 365 (380)
T 3iz6_a 286 VYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWD 365 (380)
T ss_dssp EECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTT
T ss_pred EecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCC
Confidence 8764322 2488999999999999999999999999973 33332 2578899999999999999999999
Q ss_pred CeEEEEECCCCc
Q 040361 346 GQIVVRSMNSLE 357 (413)
Q Consensus 346 g~i~v~d~~~~~ 357 (413)
|.|++|++...+
T Consensus 366 ~~i~iW~~~~~~ 377 (380)
T 3iz6_a 366 KNLKIWAFSGHR 377 (380)
T ss_dssp SCEEEEECCSSS
T ss_pred CCEEEEecCCCc
Confidence 999999987654
No 25
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=4.1e-39 Score=295.01 Aligned_cols=278 Identities=16% Similarity=0.183 Sum_probs=227.7
Q ss_pred cCCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEE
Q 040361 92 TQLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQS 171 (413)
Q Consensus 92 ~~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~ 171 (413)
.+|+|+|+++++++.|+.+++|+... .... ..+..+.......++++++.+++ |+.|+.|++||+.+++....
T Consensus 62 ~~~s~~g~~l~~~~~d~~v~i~d~~~--~~~~----~~~~~~~~~~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~ 134 (420)
T 3vl1_A 62 NTFEKVGSHLYKARLDGHDFLFNTII--RDGS----KMLKRADYTAVDTAKLQMRRFIL-GTTEGDIKVLDSNFNLQREI 134 (420)
T ss_dssp CEEEEEETTEEEEEETTEEEEEECCS--EETT----TTSCSCCEEEEEEECSSSCEEEE-EETTSCEEEECTTSCEEEEE
T ss_pred eeeeecCCeEEEEEcCCcEEEEEecc--ccee----eEEecCCceEEEEEecCCCEEEE-EECCCCEEEEeCCCcceeee
Confidence 46899999999999999999975321 1111 11222333444467778877666 55599999999999999988
Q ss_pred eecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEec
Q 040361 172 IRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSV 251 (413)
Q Consensus 172 ~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~ 251 (413)
+.+|.+.|++++|+|++++|++|+.|+.|++||+.+++ .+..+.+|...|.+++|+|
T Consensus 135 ~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~-----------------------~~~~~~~h~~~v~~~~~~~ 191 (420)
T 3vl1_A 135 DQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGS-----------------------NPRTLIGHRATVTDIAIID 191 (420)
T ss_dssp TTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-----------------------CCEEEECCSSCEEEEEEET
T ss_pred cccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCc-----------------------CceEEcCCCCcEEEEEEcC
Confidence 89999999999999999999999999999999998876 5777889999999999999
Q ss_pred CCCEEEEeeCCCcEEEEEccCCeEEEEEeCCC-----------------------CCceeeEEEccCCcEEEEECCCCeE
Q 040361 252 ELDIVISGSKDGTCVFHTLREGRYVRSLCHPS-----------------------GSALSKLAASRHGRIVLYGDDDLSL 308 (413)
Q Consensus 252 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-----------------------~~~v~~~~~~~~~~~l~~~~~d~~i 308 (413)
++++|++++.|+.|++||+++++.+..+..+. ...+.+++|+|+++++++++.||.|
T Consensus 192 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 271 (420)
T 3vl1_A 192 RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVI 271 (420)
T ss_dssp TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCE
T ss_pred CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeE
Confidence 99999999999999999999999998886431 2345566678999999999999999
Q ss_pred EEEEeCC-ceeeee--ecCCceeEEEecCCCC-EEEEeCCCCeEEEEECCCCce-EEEecC-CCCcEEEEEEccCCeEEE
Q 040361 309 HLFSING-KHLASS--ESNGRLNCLELSACGQ-FLVCGGDQGQIVVRSMNSLEV-VRRYSG-VGKIITSLAVTPEECFLA 382 (413)
Q Consensus 309 ~i~d~~~-~~~~~~--~~~~~i~~~~~s~~~~-~l~~~~~dg~i~v~d~~~~~~-~~~~~~-~~~~v~~~~~~~~~~~l~ 382 (413)
++||++. ..+... .+...+.+++|+|+++ +|++|+.||.|++||+++++. +..+.. |...|.++.+.+...+++
T Consensus 272 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s 351 (420)
T 3vl1_A 272 TVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVS 351 (420)
T ss_dssp EEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEE
T ss_pred EEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEE
Confidence 9999984 333332 4678899999999998 999999999999999998754 667765 677888886654345557
Q ss_pred EcCCCeEEEEEecCCcc
Q 040361 383 GTKDGCLLVYSIENRRT 399 (413)
Q Consensus 383 ~~~dg~i~vw~~~~~~~ 399 (413)
++.||.|++|++.+.+.
T Consensus 352 ~~~d~~v~iw~~~~~~~ 368 (420)
T 3vl1_A 352 SGFDTSIKLDIISDPES 368 (420)
T ss_dssp ETTTEEEEEEEECCTTC
T ss_pred ecCCccEEEEeccCCCC
Confidence 99999999999988533
No 26
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=4e-38 Score=281.23 Aligned_cols=276 Identities=17% Similarity=0.238 Sum_probs=229.8
Q ss_pred EEEecCCCCCCeEEEEeecCCcEEEEecCceEEEEEe-------eccCCCCCCceeeecCCCCccccCCCcCCCccc-CC
Q 040361 53 SIICSTRHQPSGIVYVGMLDSSIVLVNQGLTLSVKMW-------LTTQLQSGGNFTFSGSQDPFFGVGADILSPRNV-GS 124 (413)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~-~~ 124 (413)
.+.+..+++++..+++++.|+.+.+|+.......... ..+.|+|+|.++++|+.|+.+++|......... ..
T Consensus 66 ~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~ 145 (354)
T 2pbi_B 66 KVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAA 145 (354)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGG
T ss_pred eEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccc
Confidence 3666678888999999999999999996554333322 234689999999999999999998543322111 11
Q ss_pred CCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECC--CCCEEEEccCCCcEEE
Q 040361 125 PLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTT--DGSILATGSYDTTVMV 202 (413)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~dg~i~i 202 (413)
.......|...+..+.|+|++..+++++ .|+.|++||+++++.+..+.+|...|.+++|+| ++++|++|+.||.|++
T Consensus 146 ~~~~~~~h~~~v~~~~~~~~~~~l~t~s-~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~ 224 (354)
T 2pbi_B 146 KKKSVAMHTNYLSACSFTNSDMQILTAS-GDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMV 224 (354)
T ss_dssp GCEEEEECSSCEEEEEECSSSSEEEEEE-TTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEE
T ss_pred cceeeeccCCcEEEEEEeCCCCEEEEEe-CCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEE
Confidence 1122234566788899999998888754 599999999999999999999999999999988 5789999999999999
Q ss_pred EEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCC
Q 040361 203 WEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHP 282 (413)
Q Consensus 203 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 282 (413)
||+++++ ++..+.+|...|++++|+|++++|++|+.|++|++||+++++.+..+..+
T Consensus 225 wd~~~~~-----------------------~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~ 281 (354)
T 2pbi_B 225 WDMRSGQ-----------------------CVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKE 281 (354)
T ss_dssp EETTTCC-----------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCT
T ss_pred EECCCCc-----------------------EEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCC
Confidence 9998877 67788899999999999999999999999999999999999887776543
Q ss_pred C-CCceeeEEEccCCcEEEEECCCCeEEEEEeC-Cceeee-eecCCceeEEEecCCCCEEEEeCCCCeEEEEE
Q 040361 283 S-GSALSKLAASRHGRIVLYGDDDLSLHLFSIN-GKHLAS-SESNGRLNCLELSACGQFLVCGGDQGQIVVRS 352 (413)
Q Consensus 283 ~-~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d 352 (413)
. ...+.+++|+|++.++++++.|+.|++||+. +..+.. ..|...|.+++|+|+|++|++|+.||.|++|+
T Consensus 282 ~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 282 SIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 2 2468899999999999999999999999996 444444 46889999999999999999999999999996
No 27
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-39 Score=295.03 Aligned_cols=309 Identities=17% Similarity=0.110 Sum_probs=256.7
Q ss_pred EEecCCCCCCe-EEEEeecCCcEEEEec----CceE------EEEE-----------------eeccCCCCCCceeeecC
Q 040361 54 IICSTRHQPSG-IVYVGMLDSSIVLVNQ----GLTL------SVKM-----------------WLTTQLQSGGNFTFSGS 105 (413)
Q Consensus 54 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~------~~~~-----------------~~~~~~s~~~~~l~~~~ 105 (413)
+.+..++++++ +++++..++.+.+|+. .... .... .....|+|+++++++++
T Consensus 48 v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 127 (425)
T 1r5m_A 48 IVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGV 127 (425)
T ss_dssp CSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEE
T ss_pred eEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEe
Confidence 45556788888 9999999999999998 4433 1111 12235899999999999
Q ss_pred CCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCe-------
Q 040361 106 QDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDV------- 178 (413)
Q Consensus 106 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~------- 178 (413)
.|+.+++|+. . .........+...+.++.|+|+++.+++++. |+.|++||+.+++.+..+..+...
T Consensus 128 ~dg~i~i~~~--~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 200 (425)
T 1r5m_A 128 ENGELRLWNK--T----GALLNVLNFHRAPIVSVKWNKDGTHIISMDV-ENVTILWNVISGTVMQHFELKETGGSSINAE 200 (425)
T ss_dssp TTSCEEEEET--T----SCEEEEECCCCSCEEEEEECTTSSEEEEEET-TCCEEEEETTTTEEEEEECCC----------
T ss_pred CCCeEEEEeC--C----CCeeeeccCCCccEEEEEECCCCCEEEEEec-CCeEEEEECCCCcEEEEeeccccCccceeec
Confidence 9999999741 1 1122222335678899999999998887554 999999999999999999888777
Q ss_pred --------EEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEe
Q 040361 179 --------VSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVS 250 (413)
Q Consensus 179 --------v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~ 250 (413)
+.+++|++++ .+++++.||.|++||+.++. .+..+..|...|.+++|+
T Consensus 201 ~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~-----------------------~~~~~~~~~~~i~~~~~~ 256 (425)
T 1r5m_A 201 NHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKT-----------------------PTGKLIGHHGPISVLEFN 256 (425)
T ss_dssp -----CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSS-----------------------CSEEECCCSSCEEEEEEE
T ss_pred cccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCc-----------------------eeeeeccCCCceEEEEEC
Confidence 9999999875 68889999999999998876 567788999999999999
Q ss_pred cCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCce-eee-eecCCcee
Q 040361 251 VELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKH-LAS-SESNGRLN 328 (413)
Q Consensus 251 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~-~~~~~~i~ 328 (413)
|++++|++++.|+.|++||+++++.+..+..+ ...+.+++|+|++ .+++++.|+.|++||++... +.. ..+...+.
T Consensus 257 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~ 334 (425)
T 1r5m_A 257 DTNKLLLSASDDGTLRIWHGGNGNSQNCFYGH-SQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIF 334 (425)
T ss_dssp TTTTEEEEEETTSCEEEECSSSBSCSEEECCC-SSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEE
T ss_pred CCCCEEEEEcCCCEEEEEECCCCccceEecCC-CccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEE
Confidence 99999999999999999999999888888755 4589999999999 99999999999999998443 333 35678999
Q ss_pred EEEecCCCCEEEEeCCCCeEEEEECCCCc--------------------eEEEecCCCC--cEEEEEEccCCeEE-EEcC
Q 040361 329 CLELSACGQFLVCGGDQGQIVVRSMNSLE--------------------VVRRYSGVGK--IITSLAVTPEECFL-AGTK 385 (413)
Q Consensus 329 ~~~~s~~~~~l~~~~~dg~i~v~d~~~~~--------------------~~~~~~~~~~--~v~~~~~~~~~~~l-~~~~ 385 (413)
+++|+|++++|++++.||.|++||+.+++ .+..+..|.. .|++++|+|++.++ +++.
T Consensus 335 ~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 414 (425)
T 1r5m_A 335 AGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYS 414 (425)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEES
T ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEec
Confidence 99999999999999999999999999888 8889998876 99999999998655 6999
Q ss_pred CCeEEEEEec
Q 040361 386 DGCLLVYSIE 395 (413)
Q Consensus 386 dg~i~vw~~~ 395 (413)
||.|++|+++
T Consensus 415 dg~i~iw~~~ 424 (425)
T 1r5m_A 415 LQEGSVVAIP 424 (425)
T ss_dssp SSCCEEEECC
T ss_pred CceEEEEeec
Confidence 9999999986
No 28
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=4.9e-38 Score=279.49 Aligned_cols=282 Identities=19% Similarity=0.245 Sum_probs=231.2
Q ss_pred cCCCCC-CceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEE
Q 040361 92 TQLQSG-GNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQ 170 (413)
Q Consensus 92 ~~~s~~-~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~ 170 (413)
.+|+|+ +++|+||+.|+++++|+..-.......+......|...+.++.|+|+++++++++ .|+.|++|+........
T Consensus 44 v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~-~d~~i~~~~~~~~~~~~ 122 (340)
T 4aow_A 44 IATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGS-WDGTLRLWDLTTGTTTR 122 (340)
T ss_dssp EEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTTEEEE
T ss_pred EEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEc-ccccceEEeecccceee
Confidence 356887 5899999999999997532221111112222233567889999999999888754 59999999999999998
Q ss_pred EeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEe
Q 040361 171 SIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVS 250 (413)
Q Consensus 171 ~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~ 250 (413)
....+...+..+.+++++++|++|+.|+.+++||+..... ....+.+|...+.+++|+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~----------------------~~~~~~~~~~~v~~~~~~ 180 (340)
T 4aow_A 123 RFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCK----------------------YTVQDESHSEWVSCVRFS 180 (340)
T ss_dssp EEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE----------------------EEECSSSCSSCEEEEEEC
T ss_pred eecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCce----------------------EEEEeccccCcccceEEc
Confidence 8888999999999999999999999999999999865541 244567899999999998
Q ss_pred cCC--CEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCC-ceeeeeecCCce
Q 040361 251 VEL--DIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSING-KHLASSESNGRL 327 (413)
Q Consensus 251 ~~~--~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~i 327 (413)
+++ .++++++.|+.|++||+++++.+..+..+ ...|.+++|+|++++|++++.|+.|++||++. +.+........+
T Consensus 181 ~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h-~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v 259 (340)
T 4aow_A 181 PNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGH-TGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDII 259 (340)
T ss_dssp SCSSSCEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCE
T ss_pred cCCCCcEEEEEcCCCEEEEEECCCCceeeEecCC-CCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceE
Confidence 764 57889999999999999999999888776 45899999999999999999999999999984 445556677889
Q ss_pred eEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEec---------CCCCcEEEEEEccCCeEE-EEcCCCeEEEEEecCC
Q 040361 328 NCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYS---------GVGKIITSLAVTPEECFL-AGTKDGCLLVYSIENR 397 (413)
Q Consensus 328 ~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~l-~~~~dg~i~vw~~~~~ 397 (413)
.++.|+|++.++ +++.|+.|++||++++..+..+. +|...|++++|+|++++| +|+.||.|++||+++|
T Consensus 260 ~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 260 NALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp EEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred EeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence 999999988665 45578999999999887766553 578899999999998655 6999999999999998
Q ss_pred c
Q 040361 398 R 398 (413)
Q Consensus 398 ~ 398 (413)
+
T Consensus 339 t 339 (340)
T 4aow_A 339 T 339 (340)
T ss_dssp -
T ss_pred C
Confidence 5
No 29
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2e-38 Score=308.47 Aligned_cols=281 Identities=21% Similarity=0.252 Sum_probs=226.3
Q ss_pred CCCCCC-ceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEE
Q 040361 93 QLQSGG-NFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQS 171 (413)
Q Consensus 93 ~~s~~~-~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~ 171 (413)
+++|++ +++++|+.|+.+++|+.................|...+.++.++|+++++++ |+.|+.|+|||+.+++....
T Consensus 389 ~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s-gs~Dg~v~vwd~~~~~~~~~ 467 (694)
T 3dm0_A 389 ATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALS-GSWDGELRLWDLAAGVSTRR 467 (694)
T ss_dssp ECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEE-EETTSEEEEEETTTTEEEEE
T ss_pred EecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEE-EeCCCcEEEEECCCCcceeE
Confidence 456654 7899999999999975322211111112223346677899999999988877 55599999999999999999
Q ss_pred eecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEec
Q 040361 172 IRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSV 251 (413)
Q Consensus 172 ~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~ 251 (413)
+.+|...|.+++|+|++++|++|+.|++|++||....... .......+|...|.+++|+|
T Consensus 468 ~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~--------------------~~~~~~~~h~~~v~~~~~~~ 527 (694)
T 3dm0_A 468 FVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKY--------------------TISEGGEGHRDWVSCVRFSP 527 (694)
T ss_dssp EECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEE--------------------EECSSTTSCSSCEEEEEECS
T ss_pred EeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcce--------------------eeccCCCCCCCcEEEEEEeC
Confidence 9999999999999999999999999999999997543200 00112247899999999999
Q ss_pred CC--CEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeC-CceeeeeecCCcee
Q 040361 252 EL--DIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSIN-GKHLASSESNGRLN 328 (413)
Q Consensus 252 ~~--~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~i~ 328 (413)
++ ..+++++.|+.|++||+++++....+..| ...|.+++|+|++++|++++.|+.|++||++ ++.+........+.
T Consensus 528 ~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h-~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~ 606 (694)
T 3dm0_A 528 NTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGH-TGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIH 606 (694)
T ss_dssp CSSSCEEEEEETTSCEEEEETTTCCEEEEECCC-SSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEE
T ss_pred CCCcceEEEEeCCCeEEEEECCCCcEEEEEcCC-CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEE
Confidence 86 58999999999999999999998888776 4589999999999999999999999999998 55555566778899
Q ss_pred EEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCC-------------------CcEEEEEEccCCeEE-EEcCCCe
Q 040361 329 CLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVG-------------------KIITSLAVTPEECFL-AGTKDGC 388 (413)
Q Consensus 329 ~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-------------------~~v~~~~~~~~~~~l-~~~~dg~ 388 (413)
+++|+|++.++++++ ++.|++||+.+++.+..+..+. ..+++++|+|+|.+| +|+.||.
T Consensus 607 ~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~ 685 (694)
T 3dm0_A 607 ALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGV 685 (694)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSE
T ss_pred EEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCe
Confidence 999999999888775 5569999999998887765321 137899999998665 6999999
Q ss_pred EEEEEecC
Q 040361 389 LLVYSIEN 396 (413)
Q Consensus 389 i~vw~~~~ 396 (413)
|++|++..
T Consensus 686 i~iW~i~~ 693 (694)
T 3dm0_A 686 IRVWGIGR 693 (694)
T ss_dssp EEEEEC--
T ss_pred EEEEeccC
Confidence 99999853
No 30
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=4.5e-38 Score=285.21 Aligned_cols=244 Identities=21% Similarity=0.343 Sum_probs=210.2
Q ss_pred ceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCC------------------eEEEEEECCCCCEE
Q 040361 130 FELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRD------------------VVSCVAVTTDGSIL 191 (413)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~------------------~v~~~~~~~~~~~l 191 (413)
+.|...+.++.|+|+|+++++ |+ ++.+++|++.+++.+..+..|.. .|.+++|+|++++|
T Consensus 61 ~~h~~~V~~v~fspdg~~la~-g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l 138 (393)
T 1erj_A 61 LDHTSVVCCVKFSNDGEYLAT-GC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL 138 (393)
T ss_dssp EECSSCCCEEEECTTSSEEEE-EC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEE
T ss_pred cCCCCEEEEEEECCCCCEEEE-Ec-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEE
Confidence 456778899999999998876 55 78999999999999888876542 49999999999999
Q ss_pred EEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEcc
Q 040361 192 ATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLR 271 (413)
Q Consensus 192 ~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~ 271 (413)
++|+.|+.|++||+.+++ .+..+.+|...|.+++|+|++++|++++.|+.|++||++
T Consensus 139 ~s~~~d~~i~iwd~~~~~-----------------------~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~ 195 (393)
T 1erj_A 139 ATGAEDRLIRIWDIENRK-----------------------IVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLR 195 (393)
T ss_dssp EEEETTSCEEEEETTTTE-----------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred EEEcCCCeEEEEECCCCc-----------------------EEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECC
Confidence 999999999999998876 577889999999999999999999999999999999999
Q ss_pred CCeEEEEEeCCCCCceeeEEEcc-CCcEEEEECCCCeEEEEEeCCce-eee--------eecCCceeEEEecCCCCEEEE
Q 040361 272 EGRYVRSLCHPSGSALSKLAASR-HGRIVLYGDDDLSLHLFSINGKH-LAS--------SESNGRLNCLELSACGQFLVC 341 (413)
Q Consensus 272 ~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~-~~~--------~~~~~~i~~~~~s~~~~~l~~ 341 (413)
+++....+..+ ..+..++++| +++++++++.|+.|++||++... +.. ..|...|.+++|+|+|++|++
T Consensus 196 ~~~~~~~~~~~--~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s 273 (393)
T 1erj_A 196 TGQCSLTLSIE--DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS 273 (393)
T ss_dssp TTEEEEEEECS--SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEE
T ss_pred CCeeEEEEEcC--CCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEE
Confidence 99988887654 4789999999 89999999999999999998433 322 247788999999999999999
Q ss_pred eCCCCeEEEEECCCC------------ceEEEecCCCCcEEEEEEccCCeEE-EEcCCCeEEEEEecCCccc
Q 040361 342 GGDQGQIVVRSMNSL------------EVVRRYSGVGKIITSLAVTPEECFL-AGTKDGCLLVYSIENRRTS 400 (413)
Q Consensus 342 ~~~dg~i~v~d~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~dg~i~vw~~~~~~~~ 400 (413)
|+.||.|++||+++. .+...+.+|...|.+++|+|++.++ +|+.|+.|++||+.+++..
T Consensus 274 ~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~ 345 (393)
T 1erj_A 274 GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL 345 (393)
T ss_dssp EETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEE
T ss_pred EeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEE
Confidence 999999999999753 3456777899999999999997655 6999999999999987654
No 31
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-38 Score=291.48 Aligned_cols=294 Identities=14% Similarity=0.166 Sum_probs=241.1
Q ss_pred eccCCCCCCc-eeeec----------CCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeE
Q 040361 90 LTTQLQSGGN-FTFSG----------SQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSF 158 (413)
Q Consensus 90 ~~~~~s~~~~-~l~~~----------~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i 158 (413)
...+|+|+|. +++++ +.|+.+++|+...... ......+.+...+.++.|+|++++++++ +.||.|
T Consensus 16 ~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~v 91 (416)
T 2pm9_A 16 ATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADS---EKPIASLQVDSKFNDLDWSHNNKIIAGA-LDNGSL 91 (416)
T ss_dssp CBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGG---CSCSCCCCCSSCEEEEEECSSSSCEEEE-ESSSCE
T ss_pred ceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCC---CcEEEEEecCCceEEEEECCCCCeEEEE-ccCCeE
Confidence 4467899986 88888 8899999975322211 1122334567889999999999988774 459999
Q ss_pred EEEEcCC----CcEEEEeecCCCeEEEEEECCC-CCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCc
Q 040361 159 QVIALND----GRVVQSIRQHRDVVSCVAVTTD-GSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETP 233 (413)
Q Consensus 159 ~i~~~~~----~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (413)
++|++.+ .+.+..+.+|...|.+++|+|+ +++|++++.||.|++||+.+.......... ..
T Consensus 92 ~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~--------------~~ 157 (416)
T 2pm9_A 92 ELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTP--------------LT 157 (416)
T ss_dssp EEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCC--------------BC
T ss_pred EEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccc--------------cc
Confidence 9999987 4588889999999999999998 899999999999999999876511100000 01
Q ss_pred eeeeecCCCCeEEEEEecC-CCEEEEeeCCCcEEEEEccCCeEEEEEeCCC-----CCceeeEEEccCC-cEEEEECCCC
Q 040361 234 FHILCGHDDIITCLYVSVE-LDIVISGSKDGTCVFHTLREGRYVRSLCHPS-----GSALSKLAASRHG-RIVLYGDDDL 306 (413)
Q Consensus 234 ~~~~~~h~~~i~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-----~~~v~~~~~~~~~-~~l~~~~~d~ 306 (413)
...+..|...|.+++|+|+ +.++++++.||.|++||+++++.+..+..+. ...+.+++|+|++ .++++++.|+
T Consensus 158 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~ 237 (416)
T 2pm9_A 158 PGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSD 237 (416)
T ss_dssp CCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCS
T ss_pred cccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCC
Confidence 2234679999999999998 7899999999999999999999998887653 5689999999997 6899999998
Q ss_pred ---eEEEEEeCC--ceeeee--ecCCceeEEEecC-CCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEccCC
Q 040361 307 ---SLHLFSING--KHLASS--ESNGRLNCLELSA-CGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEE 378 (413)
Q Consensus 307 ---~i~i~d~~~--~~~~~~--~~~~~i~~~~~s~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 378 (413)
.|++||++. ...... .|...+.+++|+| ++++|++++.||.|++||+.+++.+..+.+|...|.+++|+|++
T Consensus 238 ~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~ 317 (416)
T 2pm9_A 238 NDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEA 317 (416)
T ss_dssp SSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTC
T ss_pred CCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCC
Confidence 999999984 333333 5888999999999 89999999999999999999999999999999999999999997
Q ss_pred -eEE-EEcCCCeEEEEEecCCcccc
Q 040361 379 -CFL-AGTKDGCLLVYSIENRRTSL 401 (413)
Q Consensus 379 -~~l-~~~~dg~i~vw~~~~~~~~~ 401 (413)
.++ +++.||.|++|++.+.+...
T Consensus 318 ~~~l~s~~~d~~i~iw~~~~~~~~~ 342 (416)
T 2pm9_A 318 PDLFACASFDNKIEVQTLQNLTNTL 342 (416)
T ss_dssp TTEEEECCSSSEEEEEESCCCCCSS
T ss_pred CCEEEEEecCCcEEEEEccCCCCCc
Confidence 454 69999999999998876443
No 32
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=8.1e-38 Score=275.32 Aligned_cols=242 Identities=19% Similarity=0.353 Sum_probs=210.2
Q ss_pred eecceeEEEEecCCCCEEEEeecCCCeEEEEEcCC-----CcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEe
Q 040361 131 ELGSQCFTTMQTPSENFLITCGNWENSFQVIALND-----GRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEV 205 (413)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~-----~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~ 205 (413)
.|...+.+++++|++..++++|+.|+.|++|++.. +..+..+.+|...|.+++|+|++++|++|+.|++|++||+
T Consensus 15 gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~ 94 (319)
T 3frx_A 15 GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDV 94 (319)
T ss_dssp CCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred cccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 45677889999998766666677799999999863 3456788999999999999999999999999999999999
Q ss_pred ccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCC
Q 040361 206 IRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGS 285 (413)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 285 (413)
.+++ .+..+.+|...|.+++|+|++.++++|+.|+.|++||++ ++.+..+..+ ..
T Consensus 95 ~~~~-----------------------~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h-~~ 149 (319)
T 3frx_A 95 ATGE-----------------------TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGH-ND 149 (319)
T ss_dssp TTTE-----------------------EEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCC-SS
T ss_pred CCCC-----------------------eeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEecc-CC
Confidence 8887 677889999999999999999999999999999999996 5566666655 45
Q ss_pred ceeeEEEccC------CcEEEEECCCCeEEEEEeCCceeee--eecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCc
Q 040361 286 ALSKLAASRH------GRIVLYGDDDLSLHLFSINGKHLAS--SESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLE 357 (413)
Q Consensus 286 ~v~~~~~~~~------~~~l~~~~~d~~i~i~d~~~~~~~~--~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~ 357 (413)
.+.++.+.|. +..+++++.|+.|++||++...... ..|...|.+++|+|+|++|++|+.||.|++||+.+++
T Consensus 150 ~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~ 229 (319)
T 3frx_A 150 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK 229 (319)
T ss_dssp CEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTE
T ss_pred cEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence 8999999985 4489999999999999998544332 4688999999999999999999999999999999999
Q ss_pred eEEEecCCCCcEEEEEEccCCeEEEEcCCCeEEEEEecCCc
Q 040361 358 VVRRYSGVGKIITSLAVTPEECFLAGTKDGCLLVYSIENRR 398 (413)
Q Consensus 358 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~dg~i~vw~~~~~~ 398 (413)
.+..+.. ...|.+++|+|++.+++++.++.+++|+++.+.
T Consensus 230 ~~~~~~~-~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~ 269 (319)
T 3frx_A 230 AMYTLSA-QDEVFSLAFSPNRYWLAAATATGIKVFSLDPQY 269 (319)
T ss_dssp EEEEEEC-CSCEEEEEECSSSSEEEEEETTEEEEEEETTEE
T ss_pred EEEEecC-CCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCe
Confidence 9988875 468999999999988876667779999998754
No 33
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=5.6e-39 Score=294.11 Aligned_cols=328 Identities=15% Similarity=0.133 Sum_probs=248.1
Q ss_pred CCCCCCeEEEEeecCCcEEEEecCceEEE------EEeeccCCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccce
Q 040361 58 TRHQPSGIVYVGMLDSSIVLVNQGLTLSV------KMWLTTQLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFE 131 (413)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 131 (413)
.+.+.+..++++..++.+.+|+....... .......++|+++++++++.|+.+++|+.... . .......
T Consensus 63 ~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~---~~~~~~~ 137 (420)
T 3vl1_A 63 TFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFN--L---QREIDQA 137 (420)
T ss_dssp EEEEEETTEEEEEETTEEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEETTSCEEEECTTSC--E---EEEETTS
T ss_pred eeeecCCeEEEEEcCCcEEEEEecccceeeEEecCCceEEEEEecCCCEEEEEECCCCEEEEeCCCc--c---eeeeccc
Confidence 45566777888999999999996543221 12223357999999999999999999753211 1 1111224
Q ss_pred ecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEecccccc
Q 040361 132 LGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAP 211 (413)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~ 211 (413)
+...+.++.|+|+++.+++ |+.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||+.+++..
T Consensus 138 h~~~v~~~~~~~~~~~l~s-~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 216 (420)
T 3vl1_A 138 HVSEITKLKFFPSGEALIS-SSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTI 216 (420)
T ss_dssp SSSCEEEEEECTTSSEEEE-EETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEE
T ss_pred ccCccEEEEECCCCCEEEE-EeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCcee
Confidence 5788999999999997776 555999999999999999999999999999999999999999999999999999877621
Q ss_pred ccccccceeecCCCceee-----ecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCc
Q 040361 212 EKRVRNMQIEAPRKDYVI-----VETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSA 286 (413)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 286 (413)
.. +.........+. ..........+...+.+++|+|+++++++++.||.|++||+++++.+..+...+...
T Consensus 217 ~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 292 (420)
T 3vl1_A 217 HT----FNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCS 292 (420)
T ss_dssp EE----ECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSC
T ss_pred EE----eecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCC
Confidence 10 000000000000 000000112244566677778999999999999999999999999888887666678
Q ss_pred eeeEEEccCCc-EEEEECCCCeEEEEEeCC-ce-eee-ee-cCCceeEEEecCCCCEEEEeCCCCeEEEEECCCC-----
Q 040361 287 LSKLAASRHGR-IVLYGDDDLSLHLFSING-KH-LAS-SE-SNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSL----- 356 (413)
Q Consensus 287 v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~-~~-~~~-~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~----- 356 (413)
+.+++|+|++. ++++++.||.|++||++. .. +.. .. +...+.++.+ +++++|++++.||.|++||+...
T Consensus 293 v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~ 371 (420)
T 3vl1_A 293 CNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERP 371 (420)
T ss_dssp EEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSC
T ss_pred ceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCcc
Confidence 99999999998 999999999999999984 22 333 23 6677888755 57889999999999999998863
Q ss_pred ----ceEEEecCCCCcEEEEEEccCCe----EEEEcCCCeEEEEEecC
Q 040361 357 ----EVVRRYSGVGKIITSLAVTPEEC----FLAGTKDGCLLVYSIEN 396 (413)
Q Consensus 357 ----~~~~~~~~~~~~v~~~~~~~~~~----~l~~~~dg~i~vw~~~~ 396 (413)
.....+..|...|.+++|+|++. +++.+.+|.+.+|++++
T Consensus 372 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 372 AIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp EECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred ceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 22234557888999999999976 78888999999999875
No 34
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.7e-37 Score=271.45 Aligned_cols=245 Identities=16% Similarity=0.333 Sum_probs=214.1
Q ss_pred eecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccc
Q 040361 131 ELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARA 210 (413)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~ 210 (413)
.|...+.++.|+|++++++++ +.|+.|++|++.+++....+.+|...|.+++|+|++++|++|+.|+.|++||+.+++
T Consensus 21 gh~~~v~~~~~s~~~~~l~s~-~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~- 98 (312)
T 4ery_A 21 GHTKAVSSVKFSPNGEWLASS-SADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK- 98 (312)
T ss_dssp CCSSCEEEEEECTTSSEEEEE-ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-
T ss_pred ccCCcEEEEEECCCCCEEEEe-eCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCc-
Confidence 346778999999999987775 459999999999999999999999999999999999999999999999999998876
Q ss_pred cccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeE
Q 040361 211 PEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKL 290 (413)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~ 290 (413)
.+..+.+|...|.+++|+|+++++++|+.|+.|++||+++++.+..+..+ ...+.++
T Consensus 99 ----------------------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~v~~~ 155 (312)
T 4ery_A 99 ----------------------CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH-SDPVSAV 155 (312)
T ss_dssp ----------------------EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCC-SSCEEEE
T ss_pred ----------------------EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCC-CCcEEEE
Confidence 67788999999999999999999999999999999999999998888765 4589999
Q ss_pred EEccCCcEEEEECCCCeEEEEEeCC-ceeeee--ecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCC
Q 040361 291 AASRHGRIVLYGDDDLSLHLFSING-KHLASS--ESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGK 367 (413)
Q Consensus 291 ~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~ 367 (413)
+|+|+++++++++.|+.|++||++. +.+... .+...+..++|+|++++|++++.||.|++||+.+++.+..+.+|..
T Consensus 156 ~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 235 (312)
T 4ery_A 156 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 235 (312)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCC
T ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCC
Confidence 9999999999999999999999984 333332 4566899999999999999999999999999999999999988876
Q ss_pred cEEE--EEEc-cCCeE-EEEcCCCeEEEEEecCCccc
Q 040361 368 IITS--LAVT-PEECF-LAGTKDGCLLVYSIENRRTS 400 (413)
Q Consensus 368 ~v~~--~~~~-~~~~~-l~~~~dg~i~vw~~~~~~~~ 400 (413)
.+.. ..++ +++.+ ++|+.||.|++||+.+++..
T Consensus 236 ~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~ 272 (312)
T 4ery_A 236 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 272 (312)
T ss_dssp SSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEE
T ss_pred ceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhh
Confidence 4322 2344 45654 46999999999999887644
No 35
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.7e-37 Score=282.35 Aligned_cols=277 Identities=13% Similarity=0.142 Sum_probs=226.8
Q ss_pred CCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeec
Q 040361 95 QSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQ 174 (413)
Q Consensus 95 s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~ 174 (413)
++++..+++++.|+.+++|+...... .......+...+.++.|+|+++++++ |+.||.|++||+.+++.+..+.+
T Consensus 100 ~~s~~~l~~~~~d~~v~lw~~~~~~~----~~~~~~~~~~~v~~v~~s~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~ 174 (401)
T 4aez_A 100 DWSNLNVVAVALERNVYVWNADSGSV----SALAETDESTYVASVKWSHDGSFLSV-GLGNGLVDIYDVESQTKLRTMAG 174 (401)
T ss_dssp EECTTSEEEEEETTEEEEEETTTCCE----EEEEECCTTCCEEEEEECTTSSEEEE-EETTSCEEEEETTTCCEEEEECC
T ss_pred eecCCCEEEEECCCeEEEeeCCCCcE----eEeeecCCCCCEEEEEECCCCCEEEE-ECCCCeEEEEECcCCeEEEEecC
Confidence 33446688888999999975322111 11111124677899999999988777 44599999999999999999999
Q ss_pred CCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCC
Q 040361 175 HRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELD 254 (413)
Q Consensus 175 h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~ 254 (413)
|...|.+++| ++++|++|+.||.|++||++... .....+.+|...|.+++|+|+++
T Consensus 175 ~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~----------------------~~~~~~~~~~~~v~~~~~~~~~~ 230 (401)
T 4aez_A 175 HQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIAN----------------------HQIGTLQGHSSEVCGLAWRSDGL 230 (401)
T ss_dssp CSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSS----------------------CEEEEEECCSSCEEEEEECTTSS
T ss_pred CCCceEEEEE--CCCEEEEEcCCCCEEEEecccCc----------------------ceeeEEcCCCCCeeEEEEcCCCC
Confidence 9999999999 56799999999999999998544 15677889999999999999999
Q ss_pred EEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCC-cEEEEEC--CCCeEEEEEeC-CceeeeeecCCceeEE
Q 040361 255 IVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHG-RIVLYGD--DDLSLHLFSIN-GKHLASSESNGRLNCL 330 (413)
Q Consensus 255 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~--~d~~i~i~d~~-~~~~~~~~~~~~i~~~ 330 (413)
+|++|+.|+.|++||+++++.+..+..+ ...|.+++|+|++ .++++++ .|+.|++||++ +..+....+...+.++
T Consensus 231 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~ 309 (401)
T 4aez_A 231 QLASGGNDNVVQIWDARSSIPKFTKTNH-NAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSL 309 (401)
T ss_dssp EEEEEETTSCEEEEETTCSSEEEEECCC-SSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEE
T ss_pred EEEEEeCCCeEEEccCCCCCccEEecCC-cceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEE
Confidence 9999999999999999999998888765 4689999999976 5666654 79999999998 5556666788899999
Q ss_pred EecCCCCEEEE--eCCCCeEEEEECCCCceEE--EecCCCCcEEEEEEccCCeEE-EEcCCCeEEEEEecCCcccc
Q 040361 331 ELSACGQFLVC--GGDQGQIVVRSMNSLEVVR--RYSGVGKIITSLAVTPEECFL-AGTKDGCLLVYSIENRRTSL 401 (413)
Q Consensus 331 ~~s~~~~~l~~--~~~dg~i~v~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l-~~~~dg~i~vw~~~~~~~~~ 401 (413)
+|+|+++++++ |+.||.|++||+.+++... .+.+|...|.+++|+|++.++ +++.||.|++|++.+++...
T Consensus 310 ~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~ 385 (401)
T 4aez_A 310 IWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVK 385 (401)
T ss_dssp EECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-----
T ss_pred EECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcccc
Confidence 99999999999 6689999999999865544 467899999999999998655 69999999999999886553
No 36
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-37 Score=276.86 Aligned_cols=288 Identities=18% Similarity=0.216 Sum_probs=241.7
Q ss_pred CCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEe
Q 040361 93 QLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSI 172 (413)
Q Consensus 93 ~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~ 172 (413)
.|+|+++++++++.|+.+++|+.... ........+...+.++.|+|+++++++++ .||.|++||+.+++.+..+
T Consensus 39 ~~s~~~~~l~~~~~dg~i~vwd~~~~-----~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~ 112 (369)
T 3zwl_B 39 KYNKEGDLLFSCSKDSSASVWYSLNG-----ERLGTLDGHTGTIWSIDVDCFTKYCVTGS-ADYSIKLWDVSNGQCVATW 112 (369)
T ss_dssp EECTTSCEEEEEESSSCEEEEETTTC-----CEEEEECCCSSCEEEEEECTTSSEEEEEE-TTTEEEEEETTTCCEEEEE
T ss_pred EEcCCCCEEEEEeCCCEEEEEeCCCc-----hhhhhhhhcCCcEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCcEEEEe
Confidence 45889999999999999999742211 11122223567889999999998887755 4999999999999999988
Q ss_pred ecCCCeEEEEEECCCCCEEEEccCC-----CcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCC--CeE
Q 040361 173 RQHRDVVSCVAVTTDGSILATGSYD-----TTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDD--IIT 245 (413)
Q Consensus 173 ~~h~~~v~~~~~~~~~~~l~s~s~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~i~ 245 (413)
. |...|.+++|+|++++|++++.+ +.|++||+........... ........+..|.. .+.
T Consensus 113 ~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~ 179 (369)
T 3zwl_B 113 K-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTK------------VSEEPIHKIITHEGLDAAT 179 (369)
T ss_dssp E-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEE------------ECSSCSEEEECCTTCCCEE
T ss_pred e-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecc------------cccceeeeccCCcCcccee
Confidence 8 88999999999999999999998 9999999987753221100 01124556667777 999
Q ss_pred EEEEecCCCEEEEeeCCCcEEEEEccC-CeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeC-Cceeeeeec
Q 040361 246 CLYVSVELDIVISGSKDGTCVFHTLRE-GRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSIN-GKHLASSES 323 (413)
Q Consensus 246 ~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~ 323 (413)
+++|+|+++++++++.||.|++||+++ ++.+..+..+ ...|.+++|+|++.+|++++.|+.|++||++ +..+....+
T Consensus 180 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~ 258 (369)
T 3zwl_B 180 VAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLH-EKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYET 258 (369)
T ss_dssp EEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECC-SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred EEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecC-CCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecC
Confidence 999999999999999999999999998 7778777765 4589999999999999999999999999998 455555678
Q ss_pred CCceeEEEecCCCCEEEEeCCCC--------------eEEEEECCCCceEEEecCCCCcEEEEEEccCCeEE-EEcCCCe
Q 040361 324 NGRLNCLELSACGQFLVCGGDQG--------------QIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFL-AGTKDGC 388 (413)
Q Consensus 324 ~~~i~~~~~s~~~~~l~~~~~dg--------------~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~dg~ 388 (413)
...+.+++|+|+++++++++.++ .+++||..+++.+..+.+|...|++++|+|++.++ +++.||.
T Consensus 259 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 338 (369)
T 3zwl_B 259 DCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGF 338 (369)
T ss_dssp SSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred CCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCe
Confidence 88999999999999999999888 89999999999999999999999999999998655 6999999
Q ss_pred EEEEEecCCccc
Q 040361 389 LLVYSIENRRTS 400 (413)
Q Consensus 389 i~vw~~~~~~~~ 400 (413)
|++|+++++...
T Consensus 339 v~iw~~~~~~~~ 350 (369)
T 3zwl_B 339 IRLHHFEKSYFD 350 (369)
T ss_dssp EEEEEECHHHHT
T ss_pred EEEEECccccch
Confidence 999999886543
No 37
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=3.2e-38 Score=279.93 Aligned_cols=246 Identities=18% Similarity=0.135 Sum_probs=197.9
Q ss_pred ecceeEEEEecCCCCEEEEeecCCCeEEEEEcCC-----------CcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcE
Q 040361 132 LGSQCFTTMQTPSENFLITCGNWENSFQVIALND-----------GRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTV 200 (413)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~-----------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i 200 (413)
+...+.++.|+|+|+.++. ++ |+++++||... .........|...|.+++|+|++ .|++|+.||+|
T Consensus 29 ~~~~v~~~~fs~dG~~l~~-~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v 105 (344)
T 4gqb_B 29 MERQLEAARYRSDGALLLG-AS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAV 105 (344)
T ss_dssp CCSEEEEEEECTTSCEEEE-EE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEE
T ss_pred ccCCEEEEEECCCCCEEEE-Ee-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEE
Confidence 3556888999999997765 44 77777776311 11111222366789999999985 78899999999
Q ss_pred EEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEe
Q 040361 201 MVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLC 280 (413)
Q Consensus 201 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 280 (413)
++||+.+++.... ....+.+|.+.|++++|+|++++|++|+.|++|++||+++++.+..+.
T Consensus 106 ~lWd~~~~~~~~~-------------------~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~ 166 (344)
T 4gqb_B 106 ELWELDENETLIV-------------------SKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYR 166 (344)
T ss_dssp EEEEECTTSSCEE-------------------EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred EEEeccCCCceeE-------------------eeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEc
Confidence 9999988762110 123456899999999999999999999999999999999999999998
Q ss_pred CCCCCceeeEEEccCC-cEEEEECCCCeEEEEEeCC-ceeeee---ecCCceeEEEecCC-CCEEEEeCCCCeEEEEECC
Q 040361 281 HPSGSALSKLAASRHG-RIVLYGDDDLSLHLFSING-KHLASS---ESNGRLNCLELSAC-GQFLVCGGDQGQIVVRSMN 354 (413)
Q Consensus 281 ~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~-~~~~~~---~~~~~i~~~~~s~~-~~~l~~~~~dg~i~v~d~~ 354 (413)
.| ...|.+++|++++ .++++++.|+.|++||++. +..... .+...+.+++|+|+ +++|++|+.||.|++||++
T Consensus 167 ~h-~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~ 245 (344)
T 4gqb_B 167 AH-AAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTK 245 (344)
T ss_dssp CC-SSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESC
T ss_pred Cc-CCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECC
Confidence 76 4589999999987 5789999999999999984 333332 35567899999995 5789999999999999999
Q ss_pred CCceEEEecCCCCcEEEEEEccCC-eEE-EEcCCCeEEEEEecCCccc
Q 040361 355 SLEVVRRYSGVGKIITSLAVTPEE-CFL-AGTKDGCLLVYSIENRRTS 400 (413)
Q Consensus 355 ~~~~~~~~~~~~~~v~~~~~~~~~-~~l-~~~~dg~i~vw~~~~~~~~ 400 (413)
+++++..+.+|...|++++|+|++ ++| +|+.|++|++||+.+++..
T Consensus 246 ~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~ 293 (344)
T 4gqb_B 246 STSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF 293 (344)
T ss_dssp C--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE
T ss_pred CCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE
Confidence 999999999999999999999996 444 6999999999999887643
No 38
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.1e-40 Score=298.92 Aligned_cols=321 Identities=9% Similarity=0.072 Sum_probs=249.2
Q ss_pred EEEecCCCCCCe-EEEEe----------ecCCcEEEEecCceE---EEE------EeeccCCCCCCceeeecCCCCcccc
Q 040361 53 SIICSTRHQPSG-IVYVG----------MLDSSIVLVNQGLTL---SVK------MWLTTQLQSGGNFTFSGSQDPFFGV 112 (413)
Q Consensus 53 ~~~~~~~~~~~~-~~~~~----------~~~~~~~~~~~~~~~---~~~------~~~~~~~s~~~~~l~~~~~d~~~~~ 112 (413)
.+.+..++|++. +++++ ..++.+.+|+..... ... ......|+|++.++++++.|+.+++
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~v 93 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLEL 93 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEE
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEE
Confidence 345566777765 88888 788899999865432 111 1123468999999999999999999
Q ss_pred CCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCc------EEE---EeecCCCeEEEEE
Q 040361 113 GADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGR------VVQ---SIRQHRDVVSCVA 183 (413)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~------~~~---~~~~h~~~v~~~~ 183 (413)
|+...... -.........+...+.++.|+|++..++++|+.|+.|++||+.+++ ... .+..|...|.+++
T Consensus 94 w~~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 172 (416)
T 2pm9_A 94 YSTNEANN-AINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLA 172 (416)
T ss_dssp ECCSSTTS-CCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEE
T ss_pred eecccccc-cccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEE
Confidence 75432100 0112223334577889999999944444556669999999998876 332 3467999999999
Q ss_pred ECCC-CCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecC------CCCeEEEEEecCC-CE
Q 040361 184 VTTD-GSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGH------DDIITCLYVSVEL-DI 255 (413)
Q Consensus 184 ~~~~-~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h------~~~i~~~~~~~~~-~~ 255 (413)
|+|+ +.+|++++.||.|++||+++++ .+..+..| ...|.+++|+|++ .+
T Consensus 173 ~~~~~~~~l~~~~~dg~v~iwd~~~~~-----------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 229 (416)
T 2pm9_A 173 WNQSLAHVFASAGSSNFASIWDLKAKK-----------------------EVIHLSYTSPNSGIKQQLSVVEWHPKNSTR 229 (416)
T ss_dssp ECSSCTTEEEEESSSSCEEEEETTTTE-----------------------EEEEECCCCCSSCCCCCEEEEEECSSCTTE
T ss_pred eCCCCCcEEEEEcCCCCEEEEECCCCC-----------------------cceEEeccccccccCCceEEEEECCCCCCE
Confidence 9998 7899999999999999998876 34445544 7899999999997 68
Q ss_pred EEEeeCCC---cEEEEEccCC-eEEEEEeCCCCCceeeEEEcc-CCcEEEEECCCCeEEEEEeC-Cceeee-eecCCcee
Q 040361 256 VISGSKDG---TCVFHTLREG-RYVRSLCHPSGSALSKLAASR-HGRIVLYGDDDLSLHLFSIN-GKHLAS-SESNGRLN 328 (413)
Q Consensus 256 l~s~~~dg---~i~vwd~~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~-~~~~~~-~~~~~~i~ 328 (413)
+++++.|+ .|++||++++ ..+..+...+...|.+++|+| ++.+|++++.|+.|++||++ ++.+.. ..|...+.
T Consensus 230 l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~ 309 (416)
T 2pm9_A 230 VATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCF 309 (416)
T ss_dssp EEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCC
T ss_pred EEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceE
Confidence 99999998 9999999986 555555513356899999999 89999999999999999998 444443 45788999
Q ss_pred EEEecCCC-CEEEEeCCCCeEEEEECCCCceEEEec-----------------------------------CCCCcEEEE
Q 040361 329 CLELSACG-QFLVCGGDQGQIVVRSMNSLEVVRRYS-----------------------------------GVGKIITSL 372 (413)
Q Consensus 329 ~~~~s~~~-~~l~~~~~dg~i~v~d~~~~~~~~~~~-----------------------------------~~~~~v~~~ 372 (413)
+++|+|++ .+|++++.||.|++||+.+........ .|..++.++
T Consensus 310 ~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (416)
T 2pm9_A 310 KTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAA 389 (416)
T ss_dssp CEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCC
T ss_pred EEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccce
Confidence 99999999 899999999999999998765332211 156778899
Q ss_pred EEccCCeEEE-EcCCCeEEEEEecCC
Q 040361 373 AVTPEECFLA-GTKDGCLLVYSIENR 397 (413)
Q Consensus 373 ~~~~~~~~l~-~~~dg~i~vw~~~~~ 397 (413)
+|+|+|++++ ++.|+.|++|++.+.
T Consensus 390 ~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 390 HWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp EEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred EEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 9999999886 889999999999864
No 39
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.7e-37 Score=275.07 Aligned_cols=241 Identities=15% Similarity=0.227 Sum_probs=202.1
Q ss_pred eeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEE---EeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEecccccc
Q 040361 135 QCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQ---SIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAP 211 (413)
Q Consensus 135 ~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~ 211 (413)
.+..++|+|+++.|++++ .|+.|+|||+.+++... ...+|...|.+++|+|++++|++|+.|+++++|++.....
T Consensus 18 ~v~~l~~sp~g~~las~~-~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~- 95 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCG-GDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDF- 95 (345)
T ss_dssp CEEEEEECTTSSCEEEEE-TTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-E-
T ss_pred cEEEEEECCCCCEEEEEc-CCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCe-
Confidence 788999999999888755 49999999998876432 2367999999999999999999999999999999876531
Q ss_pred ccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCe---EEEEEeCCCCCcee
Q 040361 212 EKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGR---YVRSLCHPSGSALS 288 (413)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~~~~~~v~ 288 (413)
..+..+.+|...|.+++|+|++++|++|+.|+.|++||++++. .+..+..+ ...|.
T Consensus 96 --------------------~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h-~~~v~ 154 (345)
T 3fm0_A 96 --------------------ECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSH-TQDVK 154 (345)
T ss_dssp --------------------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCC-CSCEE
T ss_pred --------------------EEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCc-CCCeE
Confidence 1466788999999999999999999999999999999998764 34445444 56899
Q ss_pred eEEEccCCcEEEEECCCCeEEEEEeCCcee----eeeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCC--------
Q 040361 289 KLAASRHGRIVLYGDDDLSLHLFSINGKHL----ASSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSL-------- 356 (413)
Q Consensus 289 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~----~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~-------- 356 (413)
+++|+|++.+|++++.|+.|++||.+.... ....|...|.+++|+|+|++|++|+.||.|++||....
T Consensus 155 ~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~ 234 (345)
T 3fm0_A 155 HVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVAC 234 (345)
T ss_dssp EEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCC
T ss_pred EEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCcccee
Confidence 999999999999999999999999985432 22468899999999999999999999999999996321
Q ss_pred -------ceEEEecC-CCCcEEEEEEccCCe-EEEEcCCCeEEEEEecCCc
Q 040361 357 -------EVVRRYSG-VGKIITSLAVTPEEC-FLAGTKDGCLLVYSIENRR 398 (413)
Q Consensus 357 -------~~~~~~~~-~~~~v~~~~~~~~~~-~l~~~~dg~i~vw~~~~~~ 398 (413)
+++..+.+ |...|.+++|+|++. +++++.|+.|++|+.....
T Consensus 235 ~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~ 285 (345)
T 3fm0_A 235 SGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNS 285 (345)
T ss_dssp C---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTS
T ss_pred eccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCC
Confidence 23444554 888999999999965 5579999999999998654
No 40
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=5.3e-38 Score=285.46 Aligned_cols=280 Identities=13% Similarity=0.147 Sum_probs=224.6
Q ss_pred ceeeecCCCCccccCCCcCCCccc-CCCCcccceecceeEEEEecCC----C---CEEEEeecCCCeEEEEEcCCCcE--
Q 040361 99 NFTFSGSQDPFFGVGADILSPRNV-GSPLAESFELGSQCFTTMQTPS----E---NFLITCGNWENSFQVIALNDGRV-- 168 (413)
Q Consensus 99 ~~l~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----~---~~l~~~g~~d~~i~i~~~~~~~~-- 168 (413)
+++++++.|+.+++|+........ .........+...+.++.|+|+ + ..+++ ++.|+.|++|++.+++.
T Consensus 27 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s-~~~dg~i~iw~~~~~~~~~ 105 (397)
T 1sq9_A 27 SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT-TSFSGDLLFYRITREDETK 105 (397)
T ss_dssp SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE-EETTSCEEEEEEEECTTTC
T ss_pred CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEE-EcCCCCEEEEEccCCcccc
Confidence 678888888888886532221000 0112223345677899999998 7 66666 55599999999998887
Q ss_pred ---EEEeecC-----CCeEEEEEEC----CCCCE-EEEccCCCcEEEEEecc------ccccccccccceeecCCCceee
Q 040361 169 ---VQSIRQH-----RDVVSCVAVT----TDGSI-LATGSYDTTVMVWEVIR------ARAPEKRVRNMQIEAPRKDYVI 229 (413)
Q Consensus 169 ---~~~~~~h-----~~~v~~~~~~----~~~~~-l~s~s~dg~i~iw~~~~------~~~~~~~~~~~~~~~~~~~~~~ 229 (413)
...+..| ...|.+++|+ |++++ |++++.||.|++||+.+ .....
T Consensus 106 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----------------- 168 (397)
T 1sq9_A 106 KVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLN----------------- 168 (397)
T ss_dssp CEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTC-----------------
T ss_pred cccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceee-----------------
Confidence 8888888 5999999999 99999 99999999999999987 44110
Q ss_pred ecCceeee-------ecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeC---C--CCCceeeEEEccCCc
Q 040361 230 VETPFHIL-------CGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCH---P--SGSALSKLAASRHGR 297 (413)
Q Consensus 230 ~~~~~~~~-------~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~---~--~~~~v~~~~~~~~~~ 297 (413)
..+...+ ..|...|.+++|+|++ ++++++.||.|++||+++++.+..+.. + ....+.+++|+|+++
T Consensus 169 -~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~ 246 (397)
T 1sq9_A 169 -WSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS 246 (397)
T ss_dssp -CCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTT
T ss_pred -ccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCC
Confidence 0011144 4588999999999999 999999999999999999999988876 3 045899999999999
Q ss_pred EEEEECCC---CeEEEEEeC-Cceeeee-e-------------cCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceE
Q 040361 298 IVLYGDDD---LSLHLFSIN-GKHLASS-E-------------SNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVV 359 (413)
Q Consensus 298 ~l~~~~~d---~~i~i~d~~-~~~~~~~-~-------------~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~ 359 (413)
+|++++.| +.|++||++ ++.+... . +...|.+++|+|++++|++++.||.|++||+.+++.+
T Consensus 247 ~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 326 (397)
T 1sq9_A 247 LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERI 326 (397)
T ss_dssp EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE
T ss_pred EEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCcee
Confidence 99999999 999999998 4444333 3 7889999999999999999999999999999999999
Q ss_pred EEec------CC---------------CCcEEEEEEccCC-----------eEEEEcCCCeEEEEEecCCc
Q 040361 360 RRYS------GV---------------GKIITSLAVTPEE-----------CFLAGTKDGCLLVYSIENRR 398 (413)
Q Consensus 360 ~~~~------~~---------------~~~v~~~~~~~~~-----------~~l~~~~dg~i~vw~~~~~~ 398 (413)
..+. +| ...|.+++|+|++ .+++++.||.|++|++++++
T Consensus 327 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 327 TTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp EEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred EEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 9998 78 8999999999997 45579999999999998864
No 41
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.6e-37 Score=275.11 Aligned_cols=242 Identities=14% Similarity=0.229 Sum_probs=202.2
Q ss_pred ecceeEEEEe-----cC-CCCEEEEeecCCCeEEEEEcCCC-------cEEEEeecCCCeEEEEEECCCCCEEEEccCCC
Q 040361 132 LGSQCFTTMQ-----TP-SENFLITCGNWENSFQVIALNDG-------RVVQSIRQHRDVVSCVAVTTDGSILATGSYDT 198 (413)
Q Consensus 132 ~~~~~~~~~~-----~~-~~~~l~~~g~~d~~i~i~~~~~~-------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg 198 (413)
|...+.++.| ++ +++.|+ +|+.|+.|++||+.++ .....+.+|...|.+++|+|++.+|++|+.|+
T Consensus 20 H~~~V~~~~~~~s~~~~~d~~~l~-sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~ 98 (343)
T 2xzm_R 20 HSDWVTSIVAGFSQKENEDSPVLI-SGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDK 98 (343)
T ss_dssp CSSCEEEEEECCCSSTTCCCCEEE-EEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTS
T ss_pred chhhhhheeeEEEeecCCCCCEEE-EEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCC
Confidence 4566778877 66 555555 4666999999999743 45678899999999999999999999999999
Q ss_pred cEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEE
Q 040361 199 TVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRS 278 (413)
Q Consensus 199 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 278 (413)
+|++||+++++ .+..+.+|...|.+++|+|++++|++++.|+.|++||+... ....
T Consensus 99 ~v~lwd~~~~~-----------------------~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~ 154 (343)
T 2xzm_R 99 TLRLWDLRTGT-----------------------TYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFS 154 (343)
T ss_dssp EEEEEETTSSC-----------------------EEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEE
T ss_pred cEEEEECCCCc-----------------------EEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceee
Confidence 99999998877 67788999999999999999999999999999999999743 3333
Q ss_pred Ee--CCCCCceeeEEEccCC----------cEEEEECCCCeEEEEEeCCceeee-eecCCceeEEEecCCCCEEEEeCCC
Q 040361 279 LC--HPSGSALSKLAASRHG----------RIVLYGDDDLSLHLFSINGKHLAS-SESNGRLNCLELSACGQFLVCGGDQ 345 (413)
Q Consensus 279 ~~--~~~~~~v~~~~~~~~~----------~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~d 345 (413)
.. ..+...+.+++|+|++ .++++++.|+.|++||.+...... ..|...|.+++|+|+|++|++|+.|
T Consensus 155 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~d 234 (343)
T 2xzm_R 155 SAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKD 234 (343)
T ss_dssp CCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred eecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEcCC
Confidence 32 1234579999999986 789999999999999976555443 4688899999999999999999999
Q ss_pred CeEEEEECCC-CceEEEecCCCCcEEEEEEccCCeEEEEcCCCeEEEEEecCCcc
Q 040361 346 GQIVVRSMNS-LEVVRRYSGVGKIITSLAVTPEECFLAGTKDGCLLVYSIENRRT 399 (413)
Q Consensus 346 g~i~v~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~dg~i~vw~~~~~~~ 399 (413)
|.|++||+.. ......+. +...|.+++|+|++.+++++.|+.|++|++.+++.
T Consensus 235 g~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~ 288 (343)
T 2xzm_R 235 KKLLIWDILNLTYPQREFD-AGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSK 288 (343)
T ss_dssp CEEEEEESSCCSSCSEEEE-CSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCS
T ss_pred CeEEEEECCCCcccceeec-CCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCC
Confidence 9999999954 44444443 55679999999999999888899999999987654
No 42
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.6e-37 Score=274.36 Aligned_cols=280 Identities=15% Similarity=0.201 Sum_probs=234.0
Q ss_pred ccCCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcE--
Q 040361 91 TTQLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRV-- 168 (413)
Q Consensus 91 ~~~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~-- 168 (413)
..+++|+|+.++.+..++.+..+. .+.. ......+.|...+.++.|+|+++.+++++ ||.|++||+.+++.
T Consensus 14 ~~~~s~dg~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~~~~--dg~i~iw~~~~~~~~~ 86 (337)
T 1gxr_A 14 SFHVTADGQMQPVPFPPDALIGPG---IPRH--ARQINTLNHGEVVCAVTISNPTRHVYTGG--KGCVKVWDISHPGNKS 86 (337)
T ss_dssp EEEECSSSCEEECCCCTTSSSSTT---CCSE--EEEEEEECCSSCCCEEEECSSSSEEEEEC--BSEEEEEETTSTTCCS
T ss_pred EEEECCCCCEEEeecCCCcEeccc---cCCc--cccceeccCCCceEEEEEecCCcEEEEcC--CCeEEEEECCCCCcee
Confidence 456899999998888777665542 1111 11122345677899999999999888754 99999999987653
Q ss_pred -EEEee--cCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeE
Q 040361 169 -VQSIR--QHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIIT 245 (413)
Q Consensus 169 -~~~~~--~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 245 (413)
...+. .|...|.+++|+|++++|++++.||.|++||+.+++. .....+..|...|.
T Consensus 87 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~---------------------~~~~~~~~~~~~i~ 145 (337)
T 1gxr_A 87 PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP---------------------RIKAELTSSAPACY 145 (337)
T ss_dssp CSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC-----------------------EEEEEEECSSSCEE
T ss_pred eeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCc---------------------ceeeecccCCCceE
Confidence 23333 7999999999999999999999999999999987651 13456778999999
Q ss_pred EEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeC-CceeeeeecC
Q 040361 246 CLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSIN-GKHLASSESN 324 (413)
Q Consensus 246 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~ 324 (413)
+++|+|+++++++++.||.|++||+++++.+..+..+ ...+.+++|+|+++++++++.|+.|++||++ ++.+....+.
T Consensus 146 ~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~ 224 (337)
T 1gxr_A 146 ALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGH-TDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFT 224 (337)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECS
T ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecc-cCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCC
Confidence 9999999999999999999999999999999888765 4589999999999999999999999999998 4455556788
Q ss_pred CceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEccCCeEE-EEcCCCeEEEEEecCCccc
Q 040361 325 GRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFL-AGTKDGCLLVYSIENRRTS 400 (413)
Q Consensus 325 ~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~dg~i~vw~~~~~~~~ 400 (413)
..+.+++|+|+++++++++.+|.|++||+.+++.. .+..|...|.+++|+|++.++ +++.||.|++|++.+++..
T Consensus 225 ~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~ 300 (337)
T 1gxr_A 225 SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI 300 (337)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred CceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEE
Confidence 89999999999999999999999999999987754 567899999999999997655 6899999999999987655
No 43
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-37 Score=272.51 Aligned_cols=248 Identities=14% Similarity=0.177 Sum_probs=197.7
Q ss_pred eecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCC--cEEEEe-ec-CCCeEEEEEECCCCCEEEEccCCCcEEEEEec
Q 040361 131 ELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDG--RVVQSI-RQ-HRDVVSCVAVTTDGSILATGSYDTTVMVWEVI 206 (413)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~--~~~~~~-~~-h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~ 206 (413)
.|...+.++.++++ ++++|+.|+.|++||+.++ +....+ .+ |...|.+++|+|++++|++|+.|++|++||+.
T Consensus 12 ~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~ 88 (330)
T 2hes_X 12 LYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKE 88 (330)
T ss_dssp CCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-
T ss_pred cCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcc
Confidence 34667888888877 5666777999999999875 455566 44 99999999999999999999999999999986
Q ss_pred cccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCC----eEEEEEeCC
Q 040361 207 RARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREG----RYVRSLCHP 282 (413)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~----~~~~~~~~~ 282 (413)
....... ....+..+.+|...|.+++|+|++++|++|+.|++|++||++.. +.+..+..+
T Consensus 89 ~~~~~~~----------------~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h 152 (330)
T 2hes_X 89 ESADRTF----------------EMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEH 152 (330)
T ss_dssp ------C----------------CCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCC
T ss_pred cCcCccc----------------cceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccC
Confidence 4321000 00145678899999999999999999999999999999999532 455666655
Q ss_pred CCCceeeEEEccCCcEEEEECCCCeEEEEEeCCc---eeee-eecCCceeEEEecCC--CCEEEEeCCCCeEEEEECCCC
Q 040361 283 SGSALSKLAASRHGRIVLYGDDDLSLHLFSINGK---HLAS-SESNGRLNCLELSAC--GQFLVCGGDQGQIVVRSMNSL 356 (413)
Q Consensus 283 ~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~---~~~~-~~~~~~i~~~~~s~~--~~~l~~~~~dg~i~v~d~~~~ 356 (413)
...|.+++|+|++.+|++++.|+.|++||.... .+.. ..|...|.+++|+|+ +.+|++|+.|+.|++||+..+
T Consensus 153 -~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~ 231 (330)
T 2hes_X 153 -SQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGD 231 (330)
T ss_dssp -SSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEE
T ss_pred -CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCC
Confidence 468999999999999999999999999998743 2333 468899999999999 779999999999999998764
Q ss_pred --------ceEEEecC-CCCcEEEEEEccCCeEEEEcCCCeEEEEEecCCc
Q 040361 357 --------EVVRRYSG-VGKIITSLAVTPEECFLAGTKDGCLLVYSIENRR 398 (413)
Q Consensus 357 --------~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~dg~i~vw~~~~~~ 398 (413)
.....+.. |...|.+++|++++.+++++.||.|++|+..+++
T Consensus 232 ~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~ 282 (330)
T 2hes_X 232 DEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGE 282 (330)
T ss_dssp CTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTE
T ss_pred CccccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCc
Confidence 34455554 8899999999988888889999999999998763
No 44
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=3.2e-37 Score=268.75 Aligned_cols=243 Identities=12% Similarity=0.164 Sum_probs=200.6
Q ss_pred eecceeEEEEecCCCCEEEEeecCCCeEEEEEcCC--CcEEEEeecCCCeEEEEEECCC--CCEEEEccCCCcEEEEEec
Q 040361 131 ELGSQCFTTMQTPSENFLITCGNWENSFQVIALND--GRVVQSIRQHRDVVSCVAVTTD--GSILATGSYDTTVMVWEVI 206 (413)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~--~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~s~dg~i~iw~~~ 206 (413)
.|...+.+++|+|++++|++++ .|+.|+|||+.. ++.+..+.+|.+.|.+++|+++ +++|++|+.|++|++||+.
T Consensus 7 ~h~~~V~~~~~s~~g~~las~s-~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~ 85 (297)
T 2pm7_B 7 AHNEMIHDAVMDYYGKRMATCS-SDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEE 85 (297)
T ss_dssp SCSSCEEEEEECTTSSEEEEEE-TTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBS
T ss_pred CCcCceEEEEECCCCCEEEEEe-CCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcC
Confidence 3467788999999999887755 599999999974 4678899999999999999864 8999999999999999998
Q ss_pred cccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecC--CCEEEEeeCCCcEEEEEccCCeE--EEEEeCC
Q 040361 207 RARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVE--LDIVISGSKDGTCVFHTLREGRY--VRSLCHP 282 (413)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~ 282 (413)
++.. ..+..+.+|...|.+++|+|+ +.+|++++.|+.|++||++++.. ...+..+
T Consensus 86 ~~~~---------------------~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h 144 (297)
T 2pm7_B 86 NGRW---------------------SQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAH 144 (297)
T ss_dssp SSCB---------------------CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECC
T ss_pred CCce---------------------EEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecc
Confidence 7631 134567789999999999997 88999999999999999987632 3344444
Q ss_pred CCCceeeEEEccC-------------CcEEEEECCCCeEEEEEeCCce-----ee-eeecCCceeEEEecCCC---CEEE
Q 040361 283 SGSALSKLAASRH-------------GRIVLYGDDDLSLHLFSINGKH-----LA-SSESNGRLNCLELSACG---QFLV 340 (413)
Q Consensus 283 ~~~~v~~~~~~~~-------------~~~l~~~~~d~~i~i~d~~~~~-----~~-~~~~~~~i~~~~~s~~~---~~l~ 340 (413)
...|.+++|+|+ +++|++++.|+.|++||++... .. ...|...|.+++|+|++ .+|+
T Consensus 145 -~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~la 223 (297)
T 2pm7_B 145 -AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMA 223 (297)
T ss_dssp -SSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEE
T ss_pred -cCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEE
Confidence 558999999996 5799999999999999997422 22 23588899999999985 8999
Q ss_pred EeCCCCeEEEEECCCCc---eEEEe--cCCCCcEEEEEEccCCeEE-EEcCCCeEEEEEecC
Q 040361 341 CGGDQGQIVVRSMNSLE---VVRRY--SGVGKIITSLAVTPEECFL-AGTKDGCLLVYSIEN 396 (413)
Q Consensus 341 ~~~~dg~i~v~d~~~~~---~~~~~--~~~~~~v~~~~~~~~~~~l-~~~~dg~i~vw~~~~ 396 (413)
+++.|+.|++||+.+.. ....+ ..|...|.+++|+|++.+| +++.||.|++|+...
T Consensus 224 s~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 224 SVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp EEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred EEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 99999999999998743 12233 4678899999999998765 599999999999864
No 45
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=3e-37 Score=279.14 Aligned_cols=272 Identities=14% Similarity=0.106 Sum_probs=216.3
Q ss_pred CCCCCC-ceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEE
Q 040361 93 QLQSGG-NFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQS 171 (413)
Q Consensus 93 ~~s~~~-~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~ 171 (413)
.|+|++ +++++|+.|+.+++|+....... .......+...+.++.|+|++..++++++.|+.|++||+.+ +....
T Consensus 80 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~ 155 (383)
T 3ei3_B 80 EWHPTHPTTVAVGSKGGDIILWDYDVQNKT---SFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQV 155 (383)
T ss_dssp EECSSCTTEEEEEEBTSCEEEEETTSTTCE---EEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEE
T ss_pred EECCCCCCEEEEEcCCCeEEEEeCCCcccc---eeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEE
Confidence 568888 89999999999999753211110 11111235788999999996555555577799999999985 55556
Q ss_pred eec---CCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEE
Q 040361 172 IRQ---HRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLY 248 (413)
Q Consensus 172 ~~~---h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~ 248 (413)
+.. |...|.+++|+|++++|++|+.|+.|++||+. ++ ++..+.+|...|.+++
T Consensus 156 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~-----------------------~~~~~~~h~~~v~~~~ 211 (383)
T 3ei3_B 156 FAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GH-----------------------EIFKEKLHKAKVTHAE 211 (383)
T ss_dssp EECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SC-----------------------EEEEEECSSSCEEEEE
T ss_pred EeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CC-----------------------EEEEeccCCCcEEEEE
Confidence 654 44889999999999999999999999999984 33 5778889999999999
Q ss_pred EecCCC-EEEEeeCCCcEEEEEccC----CeEEEEEeCCCCCceeeEEEcc-CCcEEEEECCCCeEEEEEeCC-ceeee-
Q 040361 249 VSVELD-IVISGSKDGTCVFHTLRE----GRYVRSLCHPSGSALSKLAASR-HGRIVLYGDDDLSLHLFSING-KHLAS- 320 (413)
Q Consensus 249 ~~~~~~-~l~s~~~dg~i~vwd~~~----~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~-~~~~~- 320 (413)
|+|+++ ++++++.|+.|++||+++ +..+..+. +...|.+++|+| ++.+|++++.|+.|++||++. .....
T Consensus 212 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 289 (383)
T 3ei3_B 212 FNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMP--HEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQI 289 (383)
T ss_dssp ECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEE--CSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEE
T ss_pred ECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEec--CCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccc
Confidence 999998 999999999999999997 66777664 356899999999 999999999999999999973 22221
Q ss_pred eec-----------------CCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecC--CCCcEEEEEEccCCeEE
Q 040361 321 SES-----------------NGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSG--VGKIITSLAVTPEECFL 381 (413)
Q Consensus 321 ~~~-----------------~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l 381 (413)
..+ .+.+..++|+|++++ +|+.||.|++||+.+++.+..+.+ |...+..++|+|++.+|
T Consensus 290 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l 367 (383)
T 3ei3_B 290 IIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVL 367 (383)
T ss_dssp EECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEE
T ss_pred ccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEE
Confidence 111 234555777788777 888999999999999999999986 45778888999998877
Q ss_pred EEcCCCeEEEEEecC
Q 040361 382 AGTKDGCLLVYSIEN 396 (413)
Q Consensus 382 ~~~~dg~i~vw~~~~ 396 (413)
+++.||.|++||+++
T Consensus 368 ~s~sd~~i~iw~~~~ 382 (383)
T 3ei3_B 368 ASGMGFNILIWNRED 382 (383)
T ss_dssp EEEETTEEEEEECC-
T ss_pred EEecCCcEEEEecCC
Confidence 633599999999975
No 46
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.8e-37 Score=277.23 Aligned_cols=258 Identities=18% Similarity=0.205 Sum_probs=205.5
Q ss_pred eecceeEEEEecCCCCEEEEeec-----CCCeEEEEEcCCCcEE----EEeecCCCeEEEEEECCCCCEEEEccCCCcEE
Q 040361 131 ELGSQCFTTMQTPSENFLITCGN-----WENSFQVIALNDGRVV----QSIRQHRDVVSCVAVTTDGSILATGSYDTTVM 201 (413)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~g~-----~d~~i~i~~~~~~~~~----~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~ 201 (413)
.|...+.++.|+|||++|++++. +|+.|++|+..++... ....+|...|.+++|+|++. +++++.||+|+
T Consensus 40 ~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~ 118 (357)
T 4g56_B 40 CMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVE 118 (357)
T ss_dssp CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCEE
T ss_pred cccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEEE
Confidence 35678999999999999888654 3788999998776543 33456899999999999975 55678899999
Q ss_pred EEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeC
Q 040361 202 VWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCH 281 (413)
Q Consensus 202 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 281 (413)
+||+.+++.... ......+|...|++++|+|++++|++|+.|+.|++||+++++.+..+..
T Consensus 119 lWd~~~~~~~~~-------------------~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~ 179 (357)
T 4g56_B 119 LWEILEKESLLV-------------------NKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNA 179 (357)
T ss_dssp EC--------CC-------------------CCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred EeeccccceeEE-------------------EeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC
Confidence 999988762110 1234558999999999999999999999999999999999999999987
Q ss_pred CCCCceeeEEEccCCc-EEEEECCCCeEEEEEeCC-ceeee---eecCCceeEEEecCC-CCEEEEeCCCCeEEEEECCC
Q 040361 282 PSGSALSKLAASRHGR-IVLYGDDDLSLHLFSING-KHLAS---SESNGRLNCLELSAC-GQFLVCGGDQGQIVVRSMNS 355 (413)
Q Consensus 282 ~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~-~~~~~---~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~v~d~~~ 355 (413)
+ ...|.+++|++++. ++++++.|+.|++||++. +.... ..+...+.+++|+|+ +.+|++|+.|+.|++||+++
T Consensus 180 h-~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~ 258 (357)
T 4g56_B 180 H-SSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKN 258 (357)
T ss_dssp C-SSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSC
T ss_pred C-CCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCC
Confidence 6 45899999999874 788999999999999984 33322 245678999999998 46899999999999999999
Q ss_pred CceEEEecCCCCcEEEEEEccCC-eEE-EEcCCCeEEEEEecCCcccccccccccCCc
Q 040361 356 LEVVRRYSGVGKIITSLAVTPEE-CFL-AGTKDGCLLVYSIENRRTSLPRNVKSKASI 411 (413)
Q Consensus 356 ~~~~~~~~~~~~~v~~~~~~~~~-~~l-~~~~dg~i~vw~~~~~~~~~~~~~~~~~~i 411 (413)
++.+..+.+|...|++++|+|++ ++| +|+.|++|++||+++++.. ..+.|...|
T Consensus 259 ~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~--~~~~H~~~V 314 (357)
T 4g56_B 259 PDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVF--RDLSHRDFV 314 (357)
T ss_dssp GGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEE--EECCCSSCE
T ss_pred CcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEe--EECCCCCCE
Confidence 99999999999999999999986 555 6999999999999987644 233555544
No 47
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=3e-36 Score=289.51 Aligned_cols=326 Identities=13% Similarity=0.116 Sum_probs=248.3
Q ss_pred EEecCCCC--CCeEEEEeecCCcEEEEecCce--------EEEEEee-------ccCCCCCCceeeecCCC----Ccccc
Q 040361 54 IICSTRHQ--PSGIVYVGMLDSSIVLVNQGLT--------LSVKMWL-------TTQLQSGGNFTFSGSQD----PFFGV 112 (413)
Q Consensus 54 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~-------~~~~s~~~~~l~~~~~d----~~~~~ 112 (413)
+.+..+++ ++..++++..++.+.+|+.... .....+. ...|+|+++++++++.+ +.+.+
T Consensus 67 v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~ 146 (615)
T 1pgu_A 67 VTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFIS 146 (615)
T ss_dssp EEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEE
T ss_pred EEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEE
Confidence 45556778 8899999999999999997532 2222222 23689999999999988 67888
Q ss_pred CCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCC---eEEEEEECCC-C
Q 040361 113 GADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRD---VVSCVAVTTD-G 188 (413)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~---~v~~~~~~~~-~ 188 (413)
|+ .. ........+...+.++.|+|+++.++++++.|+.|++||+.+++.+..+.+|.. .|.+++|+|+ +
T Consensus 147 ~d----~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 219 (615)
T 1pgu_A 147 WD----SG---NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSG 219 (615)
T ss_dssp TT----TC---CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTC
T ss_pred EE----CC---CcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCC
Confidence 64 11 122223345778999999999996666677799999999999999999999999 9999999999 9
Q ss_pred CEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeee-e---cCCCCeEEEEEecCCCEEEEeeCCCc
Q 040361 189 SILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHIL-C---GHDDIITCLYVSVELDIVISGSKDGT 264 (413)
Q Consensus 189 ~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~h~~~i~~~~~~~~~~~l~s~~~dg~ 264 (413)
++|++++.||.|++||+.+++ .+..+ . .|...|.+++|+ +++++++++.|+.
T Consensus 220 ~~l~~~~~dg~i~vwd~~~~~-----------------------~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~ 275 (615)
T 1pgu_A 220 EFVITVGSDRKISCFDGKSGE-----------------------FLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADAT 275 (615)
T ss_dssp CEEEEEETTCCEEEEETTTCC-----------------------EEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSE
T ss_pred CEEEEEeCCCeEEEEECCCCC-----------------------EeEEecccccccCCceEEEEEc-CCCEEEEEcCCCc
Confidence 999999999999999998876 45556 4 788899999999 8889999999999
Q ss_pred EEEEEccCCeEEEEEeCCC-------------------------------------------------------------
Q 040361 265 CVFHTLREGRYVRSLCHPS------------------------------------------------------------- 283 (413)
Q Consensus 265 i~vwd~~~~~~~~~~~~~~------------------------------------------------------------- 283 (413)
|++||+++++.+..+..+.
T Consensus 276 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~ 355 (615)
T 1pgu_A 276 IRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSY 355 (615)
T ss_dssp EEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEET
T ss_pred EEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECC
Confidence 9999988777665554320
Q ss_pred ----------------CCceeeEEEccC----------------------------------------------------
Q 040361 284 ----------------GSALSKLAASRH---------------------------------------------------- 295 (413)
Q Consensus 284 ----------------~~~v~~~~~~~~---------------------------------------------------- 295 (413)
...|.++++ ++
T Consensus 356 dg~i~~w~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 434 (615)
T 1pgu_A 356 DGRIMEWSSSSMHQDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQS 434 (615)
T ss_dssp TSCEEETTTTEEECCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEET
T ss_pred CCeEEEEEchhhcCcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEec
Confidence 111222222 11
Q ss_pred ---------------------CcEEEEECC-CCeEEEEEeCCceee---eeecCCceeEEEecCCCCEEEEeCCCCeEEE
Q 040361 296 ---------------------GRIVLYGDD-DLSLHLFSINGKHLA---SSESNGRLNCLELSACGQFLVCGGDQGQIVV 350 (413)
Q Consensus 296 ---------------------~~~l~~~~~-d~~i~i~d~~~~~~~---~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v 350 (413)
++++++++. |+.|++||+....+. ...+...+.+++|+|++++|++++.||.|++
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~i 514 (615)
T 1pgu_A 435 FTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILL 514 (615)
T ss_dssp TTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred cCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEE
Confidence 333444444 555555555533321 1346778999999999999999999999999
Q ss_pred EECCCCceEEEecC-CCCcEEEEEEcc----------CCeEE-EEcCCCeEEEEEecCCcccccccccccCCc
Q 040361 351 RSMNSLEVVRRYSG-VGKIITSLAVTP----------EECFL-AGTKDGCLLVYSIENRRTSLPRNVKSKASI 411 (413)
Q Consensus 351 ~d~~~~~~~~~~~~-~~~~v~~~~~~~----------~~~~l-~~~~dg~i~vw~~~~~~~~~~~~~~~~~~i 411 (413)
||+.+++.+..+.+ |...|++++|+| ++.++ +++.||.|++|++.++.........|...|
T Consensus 515 w~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v 587 (615)
T 1pgu_A 515 YDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGV 587 (615)
T ss_dssp EETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCE
T ss_pred eeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccce
Confidence 99999999999988 999999999999 87666 599999999999998743333333444443
No 48
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-36 Score=267.25 Aligned_cols=272 Identities=15% Similarity=0.177 Sum_probs=226.9
Q ss_pred CCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCC---cEEEEe
Q 040361 96 SGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDG---RVVQSI 172 (413)
Q Consensus 96 ~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~---~~~~~~ 172 (413)
|++.++++++.|+.+++|+.. .. ........+...+.++.|+|+++.+++++ .|+.|++|++... +....+
T Consensus 27 ~~~~~l~s~~~dg~v~vw~~~--~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~~~~~~~~~~~~~~~ 100 (313)
T 3odt_A 27 VDDSKVASVSRDGTVRLWSKD--DQ---WLGTVVYTGQGFLNSVCYDSEKELLLFGG-KDTMINGVPLFATSGEDPLYTL 100 (313)
T ss_dssp EETTEEEEEETTSEEEEEEES--SS---EEEEEEEECSSCEEEEEEETTTTEEEEEE-TTSCEEEEETTCCTTSCC-CEE
T ss_pred cCCCEEEEEEcCCcEEEEECC--CC---EEEEEeecCCccEEEEEECCCCCEEEEec-CCCeEEEEEeeecCCCCcccch
Confidence 567788888899988886421 11 11122234467789999999999888755 4999999998654 667788
Q ss_pred ecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEec-
Q 040361 173 RQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSV- 251 (413)
Q Consensus 173 ~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~- 251 (413)
.+|...|.+++| ++++|++++.||.|++|| ... ....+..|...+.+++|++
T Consensus 101 ~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~-----------------------~~~~~~~~~~~v~~~~~~~~ 153 (313)
T 3odt_A 101 IGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGS-----------------------LVYNLQAHNASVWDAKVVSF 153 (313)
T ss_dssp CCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTE-----------------------EEEEEECCSSCEEEEEEEET
T ss_pred hhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCc-----------------------EEEecccCCCceeEEEEccC
Confidence 899999999999 578999999999999999 333 4677889999999999998
Q ss_pred CCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeC-Cceeee-eecCCceeE
Q 040361 252 ELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSIN-GKHLAS-SESNGRLNC 329 (413)
Q Consensus 252 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~-~~~~~~i~~ 329 (413)
+++.+++++.||.|++|| .++....+...+...+.+++++|++. +++++.|+.|++||++ ++.+.. ..+...+.+
T Consensus 154 ~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~ 230 (313)
T 3odt_A 154 SENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYC 230 (313)
T ss_dssp TTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred CCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEE
Confidence 899999999999999999 56677777765567899999999998 8999999999999998 444444 358899999
Q ss_pred EEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEccCCeEEEEcCCCeEEEEEecCCccccccc
Q 040361 330 LELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFLAGTKDGCLLVYSIENRRTSLPRN 404 (413)
Q Consensus 330 ~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~dg~i~vw~~~~~~~~~~~~ 404 (413)
++|+|++ .+++++.||.|++||+.+++.+..+..|...|.+++|+|++++++++.||.|++|++++++......
T Consensus 231 ~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~~~~~~~~~~ 304 (313)
T 3odt_A 231 IKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGDIIVGSSDNLVRIFSQEKSRWASEDE 304 (313)
T ss_dssp EEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSCEEEEETTSCEEEEESCGGGCCC---
T ss_pred EEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCCEEEEeCCCcEEEEeCCCCceeehhh
Confidence 9999999 5889999999999999999999999999999999999999999999999999999999876655443
No 49
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.1e-37 Score=279.08 Aligned_cols=278 Identities=14% Similarity=0.186 Sum_probs=220.3
Q ss_pred cCCCCCCc-eeeecCC---CCccccCCCcCCCcccCCCCcccceecceeEEEEecCC---CCEEEEeecCCCeEEEEEcC
Q 040361 92 TQLQSGGN-FTFSGSQ---DPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPS---ENFLITCGNWENSFQVIALN 164 (413)
Q Consensus 92 ~~~s~~~~-~l~~~~~---d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~g~~d~~i~i~~~~ 164 (413)
..|+|++. ++++++. |+.+++|+.... .........+...+.++.|+|+ +..+++ |+.||.|++||+.
T Consensus 24 ~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~-~~~dg~i~iwd~~ 98 (357)
T 3i2n_A 24 CKWVPCSAKFVTMGNFARGTGVIQLYEIQHG----DLKLLREIEKAKPIKCGTFGATSLQQRYLAT-GDFGGNLHIWNLE 98 (357)
T ss_dssp EEECTTSSEEEEEEC--CCCEEEEEEEECSS----SEEEEEEEEESSCEEEEECTTCCTTTCCEEE-EETTSCEEEECTT
T ss_pred EEEcCCCceEEEecCccCCCcEEEEEeCCCC----cccceeeecccCcEEEEEEcCCCCCCceEEE-ecCCCeEEEEeCC
Confidence 34688884 4566666 889998643211 1111223356778999999998 465555 5669999999999
Q ss_pred CCc-EEEEeecCCCeEEEEE------ECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeee
Q 040361 165 DGR-VVQSIRQHRDVVSCVA------VTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHIL 237 (413)
Q Consensus 165 ~~~-~~~~~~~h~~~v~~~~------~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (413)
+++ .+..+.+|...|.+++ |+|++++|++++.||.|++||+.++.. ++..+
T Consensus 99 ~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~----------------------~~~~~ 156 (357)
T 3i2n_A 99 APEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDD----------------------PVANM 156 (357)
T ss_dssp SCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSS----------------------CSEEE
T ss_pred CCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCC----------------------cceec
Confidence 888 8889999999999995 578999999999999999999987652 34445
Q ss_pred ecCCC----CeEEEE----EecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEcc---CCcEEEEECCCC
Q 040361 238 CGHDD----IITCLY----VSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASR---HGRIVLYGDDDL 306 (413)
Q Consensus 238 ~~h~~----~i~~~~----~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~ 306 (413)
..|.+ .+.+++ |+++++++++++.||.|++||+++++....... ...+.+++|+| ++.++++++.|+
T Consensus 157 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~l~~~~~dg 234 (357)
T 3i2n_A 157 EPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNI--KNGVCSLEFDRKDISMNKLVATSLEG 234 (357)
T ss_dssp CCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEEC--SSCEEEEEESCSSSSCCEEEEEESTT
T ss_pred cccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCC--CCceEEEEcCCCCCCCCEEEEECCCC
Confidence 44444 788888 678999999999999999999999988665443 45899999999 999999999999
Q ss_pred eEEEEEeCCcee-e------eeecCCceeEEEecCCCC-EEEEeCCCCeEEEEECCCC-------------------ceE
Q 040361 307 SLHLFSINGKHL-A------SSESNGRLNCLELSACGQ-FLVCGGDQGQIVVRSMNSL-------------------EVV 359 (413)
Q Consensus 307 ~i~i~d~~~~~~-~------~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~v~d~~~~-------------------~~~ 359 (413)
.|++||++.... . ...+...|.+++|+|+++ ++++|+.||.|++||+.++ +.+
T Consensus 235 ~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~ 314 (357)
T 3i2n_A 235 KFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLL 314 (357)
T ss_dssp EEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEE
T ss_pred eEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCcccccccccee
Confidence 999999973221 1 126888999999999998 8999999999999999753 456
Q ss_pred EEecCCCCcEEEEEEccCCe-EE-EEcCCCeEEEEEecCCc
Q 040361 360 RRYSGVGKIITSLAVTPEEC-FL-AGTKDGCLLVYSIENRR 398 (413)
Q Consensus 360 ~~~~~~~~~v~~~~~~~~~~-~l-~~~~dg~i~vw~~~~~~ 398 (413)
..+.+|...|++++|+|++. ++ +++.||.|++|++.+.+
T Consensus 315 ~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 315 QNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp EEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred eccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 77888999999999999975 54 58999999999998764
No 50
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=5.8e-38 Score=281.79 Aligned_cols=239 Identities=13% Similarity=0.175 Sum_probs=200.9
Q ss_pred cceeEEEEecCCCC---EEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECC-CCCEEEEccCCCcEEEEEeccc
Q 040361 133 GSQCFTTMQTPSEN---FLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTT-DGSILATGSYDTTVMVWEVIRA 208 (413)
Q Consensus 133 ~~~~~~~~~~~~~~---~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~dg~i~iw~~~~~ 208 (413)
...+.+++|+|++. .++++|+.||.|++||+.+++.+..+.+|...|.+++|+| ++++|++|+.||.|++||+.++
T Consensus 69 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 148 (366)
T 3k26_A 69 DENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD 148 (366)
T ss_dssp TCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTT
T ss_pred CCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecC
Confidence 46688999999843 3444566699999999999999999999999999999999 8999999999999999999877
Q ss_pred cccccccccceeecCCCceeeecCceeee---ecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeC----
Q 040361 209 RAPEKRVRNMQIEAPRKDYVIVETPFHIL---CGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCH---- 281 (413)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~---- 281 (413)
+ .+..+ .+|...|.+++|+|+++++++++.||.|++||+++++....+..
T Consensus 149 ~-----------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 205 (366)
T 3k26_A 149 T-----------------------LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDY 205 (366)
T ss_dssp E-----------------------EEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTC
T ss_pred e-----------------------EEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEe
Confidence 6 45555 68999999999999999999999999999999987654432221
Q ss_pred -----------------------CCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCce---------------eee-ee
Q 040361 282 -----------------------PSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKH---------------LAS-SE 322 (413)
Q Consensus 282 -----------------------~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~---------------~~~-~~ 322 (413)
.+...|.+++|+ ++++++++.|+.|++||++... +.. ..
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (366)
T 3k26_A 206 NPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDY 283 (366)
T ss_dssp CGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEEC
T ss_pred cCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccc
Confidence 135689999998 7799999999999999997421 222 35
Q ss_pred cCCceeEEEecCC--CCEEEEeCCCCeEEEEECCCCce----EEEecCC--CCcEEEEEEccCCeEE-EEcCCCeEEEEE
Q 040361 323 SNGRLNCLELSAC--GQFLVCGGDQGQIVVRSMNSLEV----VRRYSGV--GKIITSLAVTPEECFL-AGTKDGCLLVYS 393 (413)
Q Consensus 323 ~~~~i~~~~~s~~--~~~l~~~~~dg~i~v~d~~~~~~----~~~~~~~--~~~v~~~~~~~~~~~l-~~~~dg~i~vw~ 393 (413)
+...+.+++|+|+ +++|++|+.||.|++||+.+++. ...+..| ...|++++|+|++.++ +++.||.|++||
T Consensus 284 ~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 363 (366)
T 3k26_A 284 SQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWD 363 (366)
T ss_dssp SSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred cCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEE
Confidence 6778999999999 99999999999999999998763 3467777 7899999999998655 699999999999
Q ss_pred ecC
Q 040361 394 IEN 396 (413)
Q Consensus 394 ~~~ 396 (413)
+.+
T Consensus 364 ~~~ 366 (366)
T 3k26_A 364 RLR 366 (366)
T ss_dssp C--
T ss_pred ecC
Confidence 853
No 51
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.2e-38 Score=282.61 Aligned_cols=277 Identities=13% Similarity=0.073 Sum_probs=209.8
Q ss_pred ccCCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCc---
Q 040361 91 TTQLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGR--- 167 (413)
Q Consensus 91 ~~~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~--- 167 (413)
...|+|+|+++++++.|+.+++|+....... .......|...+.++.|+|+++++++++ .|+.|++||+.+++
T Consensus 16 ~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~---~~~~~~~h~~~v~~~~~s~~~~~l~s~s-~d~~v~vwd~~~~~~~~ 91 (377)
T 3dwl_C 16 EHAFNSQRTEFVTTTATNQVELYEQDGNGWK---HARTFSDHDKIVTCVDWAPKSNRIVTCS-QDRNAYVYEKRPDGTWK 91 (377)
T ss_dssp CCEECSSSSEEECCCSSSCBCEEEEETTEEE---ECCCBCCCSSCEEEEEECTTTCCEEEEE-TTSSEEEC------CCC
T ss_pred EEEECCCCCEEEEecCCCEEEEEEccCCceE---EEEEEecCCceEEEEEEeCCCCEEEEEe-CCCeEEEEEcCCCCcee
Confidence 4568999999999999999999753221101 1222234577899999999998877754 59999999999877
Q ss_pred EEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeec-CCCCeEE
Q 040361 168 VVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCG-HDDIITC 246 (413)
Q Consensus 168 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~i~~ 246 (413)
....+.+|...|.+++|+|++++|++|+.|+.|++||++++... .....+.+ |...|.+
T Consensus 92 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--------------------~~~~~~~~~h~~~v~~ 151 (377)
T 3dwl_C 92 QTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDW--------------------WVSKHLKRPLRSTILS 151 (377)
T ss_dssp CEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----C--------------------CCCEEECSSCCSCEEE
T ss_pred eeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccc--------------------eeeeEeecccCCCeEE
Confidence 67778889999999999999999999999999999999876510 02455666 9999999
Q ss_pred EEEecCCCEEEEeeCCCcEEEEEcc------------------CCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeE
Q 040361 247 LYVSVELDIVISGSKDGTCVFHTLR------------------EGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSL 308 (413)
Q Consensus 247 ~~~~~~~~~l~s~~~dg~i~vwd~~------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 308 (413)
++|+|++++|++++.|+.|++||++ .++.+..+ .+...|.+++|+|++++|++++.|+.|
T Consensus 152 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~d~~i 229 (377)
T 3dwl_C 152 LDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY--PSGGWVHAVGFSPSGNALAYAGHDSSV 229 (377)
T ss_dssp EEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC--CCSSSEEEEEECTTSSCEEEEETTTEE
T ss_pred EEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc--cCCceEEEEEECCCCCEEEEEeCCCcE
Confidence 9999999999999999999999985 24455555 445689999999999999999999999
Q ss_pred EEEEeCCce-----ee-eeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCc--e----------------------
Q 040361 309 HLFSINGKH-----LA-SSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLE--V---------------------- 358 (413)
Q Consensus 309 ~i~d~~~~~-----~~-~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~--~---------------------- 358 (413)
++||++... +. ...+...+.+++|+|++++|++|+.++.+ +|+..... .
T Consensus 230 ~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (377)
T 3dwl_C 230 TIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEG 308 (377)
T ss_dssp C-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCC
T ss_pred EEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccc
Confidence 999998432 22 24678899999999999999999877766 66554111 0
Q ss_pred ---E---------EEe----------------cCCCCcEEEEEEccCC-----eEEEEcCCCeEEEEEe
Q 040361 359 ---V---------RRY----------------SGVGKIITSLAVTPEE-----CFLAGTKDGCLLVYSI 394 (413)
Q Consensus 359 ---~---------~~~----------------~~~~~~v~~~~~~~~~-----~~l~~~~dg~i~vw~~ 394 (413)
. ..+ ..|.+.|+++.+.+.. .+++|+.||.|++||+
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 309 REEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp CCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0 001 1288999999987653 4778999999999985
No 52
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=5.1e-37 Score=275.03 Aligned_cols=221 Identities=10% Similarity=0.152 Sum_probs=177.6
Q ss_pred ecCCCeEEEEEcCCCcE-EEE---e-----ecCCCeEEEEEECCCCCEEE--EccCCCcEEEEEecccccccccccccee
Q 040361 152 GNWENSFQVIALNDGRV-VQS---I-----RQHRDVVSCVAVTTDGSILA--TGSYDTTVMVWEVIRARAPEKRVRNMQI 220 (413)
Q Consensus 152 g~~d~~i~i~~~~~~~~-~~~---~-----~~h~~~v~~~~~~~~~~~l~--s~s~dg~i~iw~~~~~~~~~~~~~~~~~ 220 (413)
|+.|+.+++|++..... +.. . ..+...+.+++|+|||++|+ +++.|++|++||+.+++
T Consensus 100 ~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~----------- 168 (365)
T 4h5i_A 100 GKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLT----------- 168 (365)
T ss_dssp TSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTE-----------
T ss_pred ecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCc-----------
Confidence 34578899999865432 221 1 12456689999999999976 45579999999998876
Q ss_pred ecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEE-eCCCCCceeeEEEccCCcEE
Q 040361 221 EAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSL-CHPSGSALSKLAASRHGRIV 299 (413)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l 299 (413)
++..+ .|...|.+++|+|+++++++++.+ .+.+|+..+++.+... ...+...+.+++|+|++..+
T Consensus 169 ------------~~~~~-~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l 234 (365)
T 4h5i_A 169 ------------EKFEI-ETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVL 234 (365)
T ss_dssp ------------EEEEE-ECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEE
T ss_pred ------------EEEEe-CCCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEE
Confidence 45555 488889999999999999999855 5667777777665443 33445679999999999999
Q ss_pred EEECCCC----eEEEEEeCCcee------eeeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEe-cCCCCc
Q 040361 300 LYGDDDL----SLHLFSINGKHL------ASSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRY-SGVGKI 368 (413)
Q Consensus 300 ~~~~~d~----~i~i~d~~~~~~------~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~-~~~~~~ 368 (413)
++++.|+ .++.|++..... ....+...|++++|+|+|++||+|+.|+.|+|||+.+++++..+ .+|...
T Consensus 235 ~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~ 314 (365)
T 4h5i_A 235 IAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFA 314 (365)
T ss_dssp EEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSC
T ss_pred EEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCC
Confidence 9998776 688898874322 12357788999999999999999999999999999999999875 689999
Q ss_pred EEEEEEccCCeEE-EEcCCCeEEEEEecCC
Q 040361 369 ITSLAVTPEECFL-AGTKDGCLLVYSIENR 397 (413)
Q Consensus 369 v~~~~~~~~~~~l-~~~~dg~i~vw~~~~~ 397 (413)
|++++|+|||++| +|+.|++|+||++...
T Consensus 315 V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 315 ITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 9999999998766 5999999999999654
No 53
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-37 Score=284.61 Aligned_cols=277 Identities=14% Similarity=0.196 Sum_probs=220.5
Q ss_pred cCCCC-CCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcC---CCc
Q 040361 92 TQLQS-GGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALN---DGR 167 (413)
Q Consensus 92 ~~~s~-~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~---~~~ 167 (413)
.+|+| +++++++|+.|+.+++|+...............+.+...+.++.|+|+++.+++++ .||.|++||+. +++
T Consensus 69 ~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s-~dg~i~vwd~~~~~~~~ 147 (437)
T 3gre_A 69 SAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSS-KDGQIIVLKVNHYQQES 147 (437)
T ss_dssp EEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEE-TTSEEEEEEEEEEEETT
T ss_pred EEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEe-CCCEEEEEEeccccCCc
Confidence 35789 99999999999999997532110011011122335678899999999888877754 59999999994 666
Q ss_pred EEEEeec------------CCCeEEEEE--ECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCc
Q 040361 168 VVQSIRQ------------HRDVVSCVA--VTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETP 233 (413)
Q Consensus 168 ~~~~~~~------------h~~~v~~~~--~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (413)
....+.+ +...+.++. +++++.+|++|+.|+.|++||+++++ .
T Consensus 148 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-----------------------~ 204 (437)
T 3gre_A 148 EVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLE-----------------------R 204 (437)
T ss_dssp EEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCC-----------------------E
T ss_pred eeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe-----------------------e
Confidence 5554433 445566666 56789999999999999999998877 5
Q ss_pred eeeeec--CCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEc----cCCcEEEEECCCCe
Q 040361 234 FHILCG--HDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAAS----RHGRIVLYGDDDLS 307 (413)
Q Consensus 234 ~~~~~~--h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~~~d~~ 307 (413)
+..+.+ |...|++++|+|++++|++|+.||.|++||+++++.+..+...+...|.+++++ +++.++++++.|+.
T Consensus 205 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~ 284 (437)
T 3gre_A 205 LQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTF 284 (437)
T ss_dssp EEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEE
T ss_pred eEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCc
Confidence 777777 889999999999999999999999999999999999998874445689999665 46789999999999
Q ss_pred EEEEEeC-Cceeeeee---------------------------cCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceE
Q 040361 308 LHLFSIN-GKHLASSE---------------------------SNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVV 359 (413)
Q Consensus 308 i~i~d~~-~~~~~~~~---------------------------~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~ 359 (413)
|++||++ ++.+.... +...|.+++|+ ++++|++|+.||.|++||+.+++..
T Consensus 285 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~ 363 (437)
T 3gre_A 285 LTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSS 363 (437)
T ss_dssp EEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGC
T ss_pred EEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccc
Confidence 9999998 43332221 45568999999 7899999999999999999998877
Q ss_pred EEecC-------------------------------------CCCcEEEEEEccC--CeEE-EEcCCCeEEEEE
Q 040361 360 RRYSG-------------------------------------VGKIITSLAVTPE--ECFL-AGTKDGCLLVYS 393 (413)
Q Consensus 360 ~~~~~-------------------------------------~~~~v~~~~~~~~--~~~l-~~~~dg~i~vw~ 393 (413)
..+.+ |.+.|++++|+++ +.++ +|+.||.|++|+
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 364 KAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred eEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 76665 7899999999998 5555 699999999995
No 54
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.6e-36 Score=273.14 Aligned_cols=284 Identities=14% Similarity=0.100 Sum_probs=225.4
Q ss_pred CCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEe
Q 040361 93 QLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSI 172 (413)
Q Consensus 93 ~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~ 172 (413)
.|+|+++++++++.|+.+++|+...... ........+...+.++.|+|+++.+++++ .|+.|++||+.+++....+
T Consensus 15 ~~s~~~~~l~~~~~d~~v~i~~~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~ 90 (372)
T 1k8k_C 15 AWNKDRTQIAICPNNHEVHIYEKSGNKW---VQVHELKEHNGQVTGVDWAPDSNRIVTCG-TDRNAYVWTLKGRTWKPTL 90 (372)
T ss_dssp EECTTSSEEEEECSSSEEEEEEEETTEE---EEEEEEECCSSCEEEEEEETTTTEEEEEE-TTSCEEEEEEETTEEEEEE
T ss_pred EECCCCCEEEEEeCCCEEEEEeCCCCcE---EeeeeecCCCCcccEEEEeCCCCEEEEEc-CCCeEEEEECCCCeeeeeE
Confidence 4688889999998999998864221100 01112223567889999999998888755 5999999999888765444
Q ss_pred --ecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEe
Q 040361 173 --RQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVS 250 (413)
Q Consensus 173 --~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~ 250 (413)
..|...|.+++|+|++++|++++.|+.|++||+........ ......+|...|.+++|+
T Consensus 91 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~-------------------~~~~~~~~~~~i~~~~~~ 151 (372)
T 1k8k_C 91 VILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWV-------------------CKHIKKPIRSTVLSLDWH 151 (372)
T ss_dssp ECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEE-------------------EEEECTTCCSCEEEEEEC
T ss_pred EeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCccee-------------------eeeeecccCCCeeEEEEc
Confidence 56999999999999999999999999999999987651000 122335789999999999
Q ss_pred cCCCEEEEeeCCCcEEEEEc------------------cCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEE
Q 040361 251 VELDIVISGSKDGTCVFHTL------------------REGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFS 312 (413)
Q Consensus 251 ~~~~~l~s~~~dg~i~vwd~------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d 312 (413)
|+++++++++.||.|++||+ ..++.+..+..+ ...+.+++|+|++++|++++.|+.|++||
T Consensus 152 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~i~d 230 (372)
T 1k8k_C 152 PNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS-CGWVHGVCFSANGSRVAWVSHDSTVCLAD 230 (372)
T ss_dssp TTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC-SSCEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred CCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCC-CCeEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 99999999999999999995 367777777655 45899999999999999999999999999
Q ss_pred eC-Cceeee-eecCCceeEEEecCCCCEEEEeCCCCeEEEEECCC--Cce------------------------------
Q 040361 313 IN-GKHLAS-SESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNS--LEV------------------------------ 358 (413)
Q Consensus 313 ~~-~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~--~~~------------------------------ 358 (413)
++ ++.+.. ..+...+.+++|+|+++++++| .|+.|++|++.+ ++.
T Consensus 231 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (372)
T 1k8k_C 231 ADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKA 309 (372)
T ss_dssp GGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC
T ss_pred CCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhccccc
Confidence 97 454444 3567799999999999999888 899999999987 421
Q ss_pred --E------EEe-cCCCCcEEEEEEc-cCC---e-EEEEcCCCeEEEEEecCCcccc
Q 040361 359 --V------RRY-SGVGKIITSLAVT-PEE---C-FLAGTKDGCLLVYSIENRRTSL 401 (413)
Q Consensus 359 --~------~~~-~~~~~~v~~~~~~-~~~---~-~l~~~~dg~i~vw~~~~~~~~~ 401 (413)
. ..+ .+|...|++++|. ++| . +++|+.||.|++|++.+++..+
T Consensus 310 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~~~ 366 (372)
T 1k8k_C 310 SSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESAL 366 (372)
T ss_dssp ---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHHHC
T ss_pred ccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhHhh
Confidence 0 223 3899999999976 555 4 5579999999999998876553
No 55
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=5.2e-37 Score=269.77 Aligned_cols=244 Identities=14% Similarity=0.163 Sum_probs=198.0
Q ss_pred eecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCc--EEEEeecCCCeEEEEEECC--CCCEEEEccCCCcEEEEEec
Q 040361 131 ELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGR--VVQSIRQHRDVVSCVAVTT--DGSILATGSYDTTVMVWEVI 206 (413)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~--~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~dg~i~iw~~~ 206 (413)
.|...+.++.|+|++++|++ |+.|+.|+|||+.+++ .+..+.+|.+.|.+++|++ ++++|++|+.|++|++||++
T Consensus 11 ~H~~~V~~v~~s~~g~~las-gs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~ 89 (316)
T 3bg1_A 11 SHEDMIHDAQMDYYGTRLAT-CSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREE 89 (316)
T ss_dssp ---CCEEEEEECGGGCEEEE-EETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCS
T ss_pred cccCeEEEeeEcCCCCEEEE-EeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECC
Confidence 45678899999999988777 4559999999998775 4678899999999999986 48999999999999999998
Q ss_pred cccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecC--CCEEEEeeCCCcEEEEEccCCeEE--EEEeCC
Q 040361 207 RARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVE--LDIVISGSKDGTCVFHTLREGRYV--RSLCHP 282 (413)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~--~~~~~~ 282 (413)
++.. .....+.+|...|.+++|+|+ +.+|++|+.|+.|++||++.+... ......
T Consensus 90 ~~~~---------------------~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~ 148 (316)
T 3bg1_A 90 NGTW---------------------EKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNA 148 (316)
T ss_dssp SSCC---------------------CEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTS
T ss_pred CCcc---------------------eEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeecc
Confidence 7531 135567889999999999997 789999999999999999876322 122223
Q ss_pred CCCceeeEEEccC-----------------CcEEEEECCCCeEEEEEeCCc----eeee-eecCCceeEEEecCCC----
Q 040361 283 SGSALSKLAASRH-----------------GRIVLYGDDDLSLHLFSINGK----HLAS-SESNGRLNCLELSACG---- 336 (413)
Q Consensus 283 ~~~~v~~~~~~~~-----------------~~~l~~~~~d~~i~i~d~~~~----~~~~-~~~~~~i~~~~~s~~~---- 336 (413)
+...+.+++|+|+ +++|++++.|+.|++||++.. .+.. ..|...|.+++|+|++
T Consensus 149 h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~ 228 (316)
T 3bg1_A 149 HTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPT 228 (316)
T ss_dssp SSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSC
T ss_pred ccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCC
Confidence 3457899999987 468999999999999999732 2222 4688899999999986
Q ss_pred CEEEEeCCCCeEEEEECCCCc----eEEEecCCCCcEEEEEEccCCeEE-EEcCCCeEEEEEecC
Q 040361 337 QFLVCGGDQGQIVVRSMNSLE----VVRRYSGVGKIITSLAVTPEECFL-AGTKDGCLLVYSIEN 396 (413)
Q Consensus 337 ~~l~~~~~dg~i~v~d~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l-~~~~dg~i~vw~~~~ 396 (413)
++|++|+.||.|++||+.+.. ....+..|...|.+++|+|++.+| +++.|+.|++|+...
T Consensus 229 ~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 229 STIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp CEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred ceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 899999999999999987631 223455688999999999998655 699999999999863
No 56
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.1e-36 Score=277.10 Aligned_cols=280 Identities=16% Similarity=0.176 Sum_probs=224.8
Q ss_pred CCCCCc-eeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecC-CCCEEEEeecCCCeEEEEEcCCC-----
Q 040361 94 LQSGGN-FTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTP-SENFLITCGNWENSFQVIALNDG----- 166 (413)
Q Consensus 94 ~s~~~~-~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~g~~d~~i~i~~~~~~----- 166 (413)
++|+.. ++++++.||.+++|+..-.. ...........|...+.++.|+| +++.+++ |+.||.|++||+.++
T Consensus 42 ~~~~~~~~~~~~~~~g~i~v~~~~~~~-~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s-~s~dg~v~vw~~~~~~~~~~ 119 (402)
T 2aq5_A 42 VNPKFMALICEASGGGAFLVLPLGKTG-RVDKNVPLVCGHTAPVLDIAWCPHNDNVIAS-GSEDCTVMVWEIPDGGLVLP 119 (402)
T ss_dssp ECSSEEEEEBCCSSSCCEEEEETTCCE-ECCTTCCCBCCCSSCEEEEEECTTCTTEEEE-EETTSEEEEEECCTTCCSSC
T ss_pred ECCCeEEEEEEEcCCCEEEEEECccCC-CCCCCCceEecCCCCEEEEEeCCCCCCEEEE-EeCCCeEEEEEccCCCCccc
Confidence 345443 34567888888886432111 11122233345678899999999 6665555 666999999999887
Q ss_pred --cEEEEeecCCCeEEEEEECCCC-CEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeee--ecCC
Q 040361 167 --RVVQSIRQHRDVVSCVAVTTDG-SILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHIL--CGHD 241 (413)
Q Consensus 167 --~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~ 241 (413)
+.+..+.+|...|.+++|+|++ ++|++|+.||.|++||+.+++ .+..+ .+|.
T Consensus 120 ~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~-----------------------~~~~~~~~~~~ 176 (402)
T 2aq5_A 120 LREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA-----------------------AVLTLGPDVHP 176 (402)
T ss_dssp BCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTE-----------------------EEEEECTTTCC
T ss_pred cCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC-----------------------ccEEEecCCCC
Confidence 6678899999999999999998 699999999999999998876 56667 7899
Q ss_pred CCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEE-eCCCCCceeeEEEccCCcEEEEE---CCCCeEEEEEeCC-c
Q 040361 242 DIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSL-CHPSGSALSKLAASRHGRIVLYG---DDDLSLHLFSING-K 316 (413)
Q Consensus 242 ~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~---~~d~~i~i~d~~~-~ 316 (413)
..|.+++|+|++++|++++.||.|++||+++++.+..+ ..+.+..+..++|+|++.+++++ +.|+.|++||++. .
T Consensus 177 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~ 256 (402)
T 2aq5_A 177 DTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLE 256 (402)
T ss_dssp SCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCS
T ss_pred CceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCcccc
Confidence 99999999999999999999999999999999999988 55545458999999999999999 8999999999984 2
Q ss_pred e---eeeeecCCceeEEEecCCCCEEE-EeCCCCeEEEEECCCCce-EEEecC--CCCcEEEEEEccCCeEEEEcCCCeE
Q 040361 317 H---LASSESNGRLNCLELSACGQFLV-CGGDQGQIVVRSMNSLEV-VRRYSG--VGKIITSLAVTPEECFLAGTKDGCL 389 (413)
Q Consensus 317 ~---~~~~~~~~~i~~~~~s~~~~~l~-~~~~dg~i~v~d~~~~~~-~~~~~~--~~~~v~~~~~~~~~~~l~~~~dg~i 389 (413)
. .....+...+.+++|+|++++|+ +|+.||.|++||+.+++. +..+.. |...|.+++|+|++.++++ .++.+
T Consensus 257 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s-~~~~~ 335 (402)
T 2aq5_A 257 EPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN-KCEIA 335 (402)
T ss_dssp SCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG-GTEEE
T ss_pred CCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee-cceeE
Confidence 2 22235677899999999999986 566899999999998874 444433 5689999999999877653 56799
Q ss_pred EEEEecCCcc
Q 040361 390 LVYSIENRRT 399 (413)
Q Consensus 390 ~vw~~~~~~~ 399 (413)
++|++.+++.
T Consensus 336 ~~~~l~~~~~ 345 (402)
T 2aq5_A 336 RFYKLHERKC 345 (402)
T ss_dssp EEEEEETTEE
T ss_pred EEEEcCCCcE
Confidence 9999988643
No 57
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=4.2e-36 Score=310.60 Aligned_cols=341 Identities=15% Similarity=0.149 Sum_probs=270.9
Q ss_pred EEEecCCCCCCeEEEEeecCCcEEEEecCceEEEEEee-------ccCCCCCCceeeecCCCCccccCCCcCCCcccCCC
Q 040361 53 SIICSTRHQPSGIVYVGMLDSSIVLVNQGLTLSVKMWL-------TTQLQSGGNFTFSGSQDPFFGVGADILSPRNVGSP 125 (413)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~ 125 (413)
.+.+..+++++..++++..++.+.+|+......+..+. ...|+|+|+++++++.|+.+++|+.... ..
T Consensus 617 ~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~-----~~ 691 (1249)
T 3sfz_A 617 AVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG-----KL 691 (1249)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC-----CE
T ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCC-----ce
Confidence 45666788999999999999999999987665544332 3468999999999999999999753211 12
Q ss_pred CcccceecceeEEEEecCCC-CEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEE
Q 040361 126 LAESFELGSQCFTTMQTPSE-NFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWE 204 (413)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~-~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~ 204 (413)
......+...+.++.|+|++ ..++++|+.|+.|++||+.+++....+.+|.+.|++++|+|++++|++++.||.|++||
T Consensus 692 ~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd 771 (1249)
T 3sfz_A 692 VHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWD 771 (1249)
T ss_dssp EEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEE
T ss_pred EEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEe
Confidence 22223456778889999863 44566677799999999999999999999999999999999999999999999999999
Q ss_pred eccccccccc-------------------cccceeecCCCceeee-------------cCceee-eecCCCCeEEEEEec
Q 040361 205 VIRARAPEKR-------------------VRNMQIEAPRKDYVIV-------------ETPFHI-LCGHDDIITCLYVSV 251 (413)
Q Consensus 205 ~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~-------------~~~~~~-~~~h~~~i~~~~~~~ 251 (413)
+.++...... +....+ .+.+..++. ...... ..+|...|.+++|+|
T Consensus 772 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp 850 (1249)
T 3sfz_A 772 VRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSW-SADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSP 850 (1249)
T ss_dssp GGGTEEEEEEECCCCC--------CCCCCBCCCCB-CTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECS
T ss_pred CCCCcccceecccccccccCCccccccceEEEEEE-CCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcC
Confidence 9876522110 000011 111211111 111222 237899999999999
Q ss_pred CCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCce--------------
Q 040361 252 ELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKH-------------- 317 (413)
Q Consensus 252 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-------------- 317 (413)
+++++++++.||.|++||+.++..+..+..+ ...|.+++|+|++..+++++.|+.|++||+....
T Consensus 851 ~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h-~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~ 929 (1249)
T 3sfz_A 851 YDHLAVIALSQYCVELWNIDSRLKVADCRGH-LSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVV 929 (1249)
T ss_dssp STTEEEEECSSSCEEEEETTTTEEEEEECCC-SSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEE
T ss_pred CCCEEEEEeCCCeEEEEEcCCCceeeecCCC-ccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEE
Confidence 9999999999999999999999999888876 4589999999999999999999999999974210
Q ss_pred ----------------e---------eeeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEE
Q 040361 318 ----------------L---------ASSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSL 372 (413)
Q Consensus 318 ----------------~---------~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~ 372 (413)
. ........+.+++|+|+++++++|+.+|.|++||+.+++....+.+|...|+++
T Consensus 930 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l 1009 (1249)
T 3sfz_A 930 FQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHI 1009 (1249)
T ss_dssp EETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCE
T ss_pred EcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEE
Confidence 0 001234578999999999999999999999999999999999999999999999
Q ss_pred EEccCCeEE-EEcCCCeEEEEEecCCccc
Q 040361 373 AVTPEECFL-AGTKDGCLLVYSIENRRTS 400 (413)
Q Consensus 373 ~~~~~~~~l-~~~~dg~i~vw~~~~~~~~ 400 (413)
+|+|++.++ +++.||.|++|++.+++..
T Consensus 1010 ~~s~dg~~l~s~~~dg~i~vwd~~~~~~~ 1038 (1249)
T 3sfz_A 1010 QFTADGKTLISSSEDSVIQVWNWQTGDYV 1038 (1249)
T ss_dssp EECSSSSCEEEECSSSBEEEEETTTTEEE
T ss_pred EECCCCCEEEEEcCCCEEEEEECCCCceE
Confidence 999998644 6999999999999887644
No 58
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1e-35 Score=267.87 Aligned_cols=243 Identities=14% Similarity=0.192 Sum_probs=212.8
Q ss_pred ecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCc--EEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEecccc
Q 040361 132 LGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGR--VVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRAR 209 (413)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~ 209 (413)
+...+.++.|+|+++++++++ .|+.|++||+.+++ .+..+.+|...|.+++|+|++++|++++.||.|++||+.+++
T Consensus 7 ~~~~i~~~~~s~~~~~l~~~~-~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 85 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQIAICP-NNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT 85 (372)
T ss_dssp CSSCCCEEEECTTSSEEEEEC-SSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE
T ss_pred cCCCeEEEEECCCCCEEEEEe-CCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCe
Confidence 356788999999999887754 49999999999887 888999999999999999999999999999999999997765
Q ss_pred ccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeE---EEEEeCCCCCc
Q 040361 210 APEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRY---VRSLCHPSGSA 286 (413)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~---~~~~~~~~~~~ 286 (413)
. .....+..|...|.+++|+|+++++++++.|+.|++||++.+.. ...+...+...
T Consensus 86 ~---------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~ 144 (372)
T 1k8k_C 86 W---------------------KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRST 144 (372)
T ss_dssp E---------------------EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSC
T ss_pred e---------------------eeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCC
Confidence 1 02334467999999999999999999999999999999988763 44444445678
Q ss_pred eeeEEEccCCcEEEEECCCCeEEEEEeC-------------------Cceeeee-ecCCceeEEEecCCCCEEEEeCCCC
Q 040361 287 LSKLAASRHGRIVLYGDDDLSLHLFSIN-------------------GKHLASS-ESNGRLNCLELSACGQFLVCGGDQG 346 (413)
Q Consensus 287 v~~~~~~~~~~~l~~~~~d~~i~i~d~~-------------------~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg 346 (413)
|.+++|+|+++++++++.|+.|++||++ +..+... .+...+.+++|+|++++|++++.||
T Consensus 145 i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 224 (372)
T 1k8k_C 145 VLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDS 224 (372)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTT
T ss_pred eeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCC
Confidence 9999999999999999999999999963 3333333 5788999999999999999999999
Q ss_pred eEEEEECCCCceEEEecCCCCcEEEEEEccCCeEEEEcCCCeEEEEEecC
Q 040361 347 QIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFLAGTKDGCLLVYSIEN 396 (413)
Q Consensus 347 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~dg~i~vw~~~~ 396 (413)
.|++||+++++.+..+..|...|.+++|+|++.+++++.|+.|++|++.+
T Consensus 225 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~ 274 (372)
T 1k8k_C 225 TVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDS 274 (372)
T ss_dssp EEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEET
T ss_pred EEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccC
Confidence 99999999999999999999999999999999988866999999999988
No 59
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.3e-37 Score=281.00 Aligned_cols=244 Identities=15% Similarity=0.137 Sum_probs=199.9
Q ss_pred cceeEEEEecCCCCEEEEeecCCCeEEEEEcCCC--cEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccc
Q 040361 133 GSQCFTTMQTPSENFLITCGNWENSFQVIALNDG--RVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARA 210 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~ 210 (413)
...+.++.|+|+++++++ |+.|+.|++||+.++ +.+..+.+|...|.+++|+|++++|++++.|+.|++||+.++..
T Consensus 11 ~~~v~~~~~s~~g~~l~~-~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~ 89 (377)
T 3dwl_C 11 PKPSYEHAFNSQRTEFVT-TTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGT 89 (377)
T ss_dssp SSCCSCCEECSSSSEEEC-CCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------C
T ss_pred CCcEEEEEECCCCCEEEE-ecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCc
Confidence 456788899999987766 555999999999988 77788899999999999999999999999999999999987641
Q ss_pred cccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeE---EEEEeCCCCCce
Q 040361 211 PEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRY---VRSLCHPSGSAL 287 (413)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~---~~~~~~~~~~~v 287 (413)
..+...+.+|...|.+++|+|++++|++++.|+.|++||+++++. ...+..++...|
T Consensus 90 --------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v 149 (377)
T 3dwl_C 90 --------------------WKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTI 149 (377)
T ss_dssp --------------------CCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCE
T ss_pred --------------------eeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCe
Confidence 013566778999999999999999999999999999999998873 667766356789
Q ss_pred eeEEEccCCcEEEEECCCCeEEEEEeC-------------------CceeeeeecCCceeEEEecCCCCEEEEeCCCCeE
Q 040361 288 SKLAASRHGRIVLYGDDDLSLHLFSIN-------------------GKHLASSESNGRLNCLELSACGQFLVCGGDQGQI 348 (413)
Q Consensus 288 ~~~~~~~~~~~l~~~~~d~~i~i~d~~-------------------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i 348 (413)
.+++|+|++++|++++.|+.|++||++ +..+....|...|.+++|+|++++|++++.||.|
T Consensus 150 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i 229 (377)
T 3dwl_C 150 LSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSV 229 (377)
T ss_dssp EEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEE
T ss_pred EEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcE
Confidence 999999999999999999999999985 2222223678889999999999999999999999
Q ss_pred EEEECCCCce----EEEecCCCCcEEEEEEccCCeEEEEcCCCeEEEEEecCC
Q 040361 349 VVRSMNSLEV----VRRYSGVGKIITSLAVTPEECFLAGTKDGCLLVYSIENR 397 (413)
Q Consensus 349 ~v~d~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~dg~i~vw~~~~~ 397 (413)
++||+.+++. +..+.+|...|.+++|+|++++++++.++.+.+|+....
T Consensus 230 ~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~ 282 (377)
T 3dwl_C 230 TIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGNES 282 (377)
T ss_dssp C-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEECCCC-
T ss_pred EEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEeCCC
Confidence 9999999887 788889999999999999998887555555668877643
No 60
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2.2e-37 Score=284.59 Aligned_cols=281 Identities=15% Similarity=0.086 Sum_probs=209.8
Q ss_pred cCCCC-CCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEE
Q 040361 92 TQLQS-GGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQ 170 (413)
Q Consensus 92 ~~~s~-~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~ 170 (413)
.+|+| ++++||+|+.||.+++|+...... ........|...|.++.|+|.+..++++|+.||+|++||+.++....
T Consensus 125 l~~~P~~~~~lasGs~dg~i~lWd~~~~~~---~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~ 201 (435)
T 4e54_B 125 LAWHPTHPSTVAVGSKGGDIMLWNFGIKDK---PTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRV 201 (435)
T ss_dssp EEECSSCTTCEEEEETTSCEEEECSSCCSC---CEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEE
T ss_pred EEEeCCCCCEEEEEeCCCEEEEEECCCCCc---eeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeE
Confidence 35688 457899999999999975322211 11223345678899999998544444456679999999997765443
Q ss_pred Eeec--CCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEE
Q 040361 171 SIRQ--HRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLY 248 (413)
Q Consensus 171 ~~~~--h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~ 248 (413)
.... +...+.+++|+|++++|++|+.||.|++||++.. .+..+.+|...|++++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~------------------------~~~~~~~h~~~v~~v~ 257 (435)
T 4e54_B 202 FASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK------------------------ELWNLRMHKKKVTHVA 257 (435)
T ss_dssp EECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC------------------------BCCCSBCCSSCEEEEE
T ss_pred EeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc------------------------eeEEEecccceEEeee
Confidence 3333 3456789999999999999999999999998643 3566789999999999
Q ss_pred EecCCC-EEEEeeCCCcEEEEEccCCeEEEEEe--CCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCC-ceeee-eec
Q 040361 249 VSVELD-IVISGSKDGTCVFHTLREGRYVRSLC--HPSGSALSKLAASRHGRIVLYGDDDLSLHLFSING-KHLAS-SES 323 (413)
Q Consensus 249 ~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~-~~~ 323 (413)
|+|++. ++++|+.|+.|++||+++.+....+. ..+...|.+++|+|++.+|++++.|+.|++||+.. ..... ..+
T Consensus 258 ~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~ 337 (435)
T 4e54_B 258 LNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPH 337 (435)
T ss_dssp ECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCC
T ss_pred ecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecc
Confidence 999876 78899999999999998876544332 22356899999999999999999999999999973 32222 111
Q ss_pred C------CceeEEEecCCCCEEEEeC------------CCCeEEEEECCCCceEEEec-CCCCcEEEE-EEccCCeEEEE
Q 040361 324 N------GRLNCLELSACGQFLVCGG------------DQGQIVVRSMNSLEVVRRYS-GVGKIITSL-AVTPEECFLAG 383 (413)
Q Consensus 324 ~------~~i~~~~~s~~~~~l~~~~------------~dg~i~v~d~~~~~~~~~~~-~~~~~v~~~-~~~~~~~~l~~ 383 (413)
. ..+....|+|++.+++++. .++.|++||..+++.+..+. +|...|.++ +|+|+|.+|++
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~las 417 (435)
T 4e54_B 338 PHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLAS 417 (435)
T ss_dssp CCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEE
T ss_pred cccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEE
Confidence 1 1233445666666665553 34579999999999988765 677888887 69999988876
Q ss_pred cCCCeEEEEEecCCcc
Q 040361 384 TKDGCLLVYSIENRRT 399 (413)
Q Consensus 384 ~~dg~i~vw~~~~~~~ 399 (413)
+.|+.|++|++++++.
T Consensus 418 g~d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 418 AMGYHILIWSQQEART 433 (435)
T ss_dssp ECSSEEEECCCC----
T ss_pred EcCCcEEEEECCcCee
Confidence 6789999999998864
No 61
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.3e-35 Score=271.68 Aligned_cols=277 Identities=16% Similarity=0.207 Sum_probs=223.1
Q ss_pred CCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEe
Q 040361 93 QLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSI 172 (413)
Q Consensus 93 ~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~ 172 (413)
++|++ +.|++| .|+.+++|+..... .. .....-.+...|.+++|+|+|+++++ |+.||.|+|||+.+++.+..+
T Consensus 112 ~wS~~-n~lAvg-ld~tV~lWd~~tg~--~~-~~~~~~~~~~~V~sv~fspdg~~las-gs~Dg~v~iWd~~~~~~~~~~ 185 (420)
T 4gga_A 112 DWSSG-NVLAVA-LDNSVYLWSASSGD--IL-QLLQMEQPGEYISSVAWIKEGNYLAV-GTSSAEVQLWDVQQQKRLRNM 185 (420)
T ss_dssp EECTT-SEEEEE-ETTEEEEEETTTCC--EE-EEEECCSTTCCEEEEEECTTSSEEEE-EETTSCEEEEETTTTEEEEEE
T ss_pred EECCC-CEEEEE-eCCEEEEEECCCCC--EE-EEEEecCCCCcEEEEEECCCCCEEEE-EECCCeEEEEEcCCCcEEEEE
Confidence 34554 466665 48999997532111 00 00111123456899999999998877 556999999999999999999
Q ss_pred ecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecC
Q 040361 173 RQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVE 252 (413)
Q Consensus 173 ~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~ 252 (413)
.+|...+.+++++ +..|++|+.|+.+++||..... ..+..+.+|...+..+.++++
T Consensus 186 ~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~----------------------~~~~~~~~h~~~~~~~~~~~~ 241 (420)
T 4gga_A 186 TSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAE----------------------HHVATLSGHSQEVCGLRWAPD 241 (420)
T ss_dssp CCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSS----------------------CEEEEEECCSSCEEEEEECTT
T ss_pred eCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccc----------------------eeeEEecccccceeeeeecCC
Confidence 9999999999884 6799999999999999987655 246778899999999999999
Q ss_pred CCEEEEeeCCCcEEEEEccCCeE----EEEEeCCCCCceeeEEEccCC-cEEEE--ECCCCeEEEEEeC-CceeeeeecC
Q 040361 253 LDIVISGSKDGTCVFHTLREGRY----VRSLCHPSGSALSKLAASRHG-RIVLY--GDDDLSLHLFSIN-GKHLASSESN 324 (413)
Q Consensus 253 ~~~l~s~~~dg~i~vwd~~~~~~----~~~~~~~~~~~v~~~~~~~~~-~~l~~--~~~d~~i~i~d~~-~~~~~~~~~~ 324 (413)
++++++++.|+.+++||..+++. +.....+ ...|.+++|+|.+ .++++ |+.|+.|++||+. +.........
T Consensus 242 g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~-~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~ 320 (420)
T 4gga_A 242 GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH-QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH 320 (420)
T ss_dssp SSEEEEEETTSCEEEEESSCCSSCSCCSEEECCC-SSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS
T ss_pred CCeeeeeeccccceEEeeccccccceeeeeeccc-CCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc
Confidence 99999999999999999987653 3334433 5689999999965 45544 4679999999998 4555556777
Q ss_pred CceeEEEecCCCCEEEEeC--CCCeEEEEECCCCceEEEecCCCCcEEEEEEccCCe-EEEEcCCCeEEEEEecCCccc
Q 040361 325 GRLNCLELSACGQFLVCGG--DQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEEC-FLAGTKDGCLLVYSIENRRTS 400 (413)
Q Consensus 325 ~~i~~~~~s~~~~~l~~~~--~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~dg~i~vw~~~~~~~~ 400 (413)
..+.++.|+|+++.+++++ .||.|+|||+.+++++.++.+|.+.|++++|+|||. +++|+.|++|++||+.+....
T Consensus 321 ~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~ 399 (420)
T 4gga_A 321 SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPA 399 (420)
T ss_dssp SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC
T ss_pred cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCcc
Confidence 8899999999999888754 799999999999999999999999999999999986 446999999999999875433
No 62
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-36 Score=275.87 Aligned_cols=280 Identities=12% Similarity=0.101 Sum_probs=230.4
Q ss_pred ccCCCCCCc-eeeecCCCCccccCCC----cCCC--------cccCCCCcc---cceecceeEEEEecCCCCEEEEeecC
Q 040361 91 TTQLQSGGN-FTFSGSQDPFFGVGAD----ILSP--------RNVGSPLAE---SFELGSQCFTTMQTPSENFLITCGNW 154 (413)
Q Consensus 91 ~~~~s~~~~-~l~~~~~d~~~~~~~~----~~~~--------~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~g~~ 154 (413)
...|+|+|+ ++++++.|+.+++|+. .... ..+..++.. ...+...+.++.|+|+++++++++ .
T Consensus 50 ~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~ 128 (425)
T 1r5m_A 50 SSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGV-E 128 (425)
T ss_dssp EEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEE-T
T ss_pred EEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEe-C
Confidence 346899999 9999999999999754 2111 000111110 011355899999999999888755 5
Q ss_pred CCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCce
Q 040361 155 ENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPF 234 (413)
Q Consensus 155 d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (413)
||.|++|| .+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+.+++ .+
T Consensus 129 dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-----------------------~~ 184 (425)
T 1r5m_A 129 NGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGT-----------------------VM 184 (425)
T ss_dssp TSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTE-----------------------EE
T ss_pred CCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCc-----------------------EE
Confidence 99999999 6788899999999999999999999999999999999999998776 34
Q ss_pred eeeecCCCC---------------eEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEE
Q 040361 235 HILCGHDDI---------------ITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIV 299 (413)
Q Consensus 235 ~~~~~h~~~---------------i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 299 (413)
..+..+... +.+++|++++ .+++++.||.|++||+++++.+..+..+ ...+.+++|+|+++++
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l 262 (425)
T 1r5m_A 185 QHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGH-HGPISVLEFNDTNKLL 262 (425)
T ss_dssp EEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCC-SSCEEEEEEETTTTEE
T ss_pred EEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccC-CCceEEEEECCCCCEE
Confidence 445555544 8999999874 6889999999999999999888888765 4689999999999999
Q ss_pred EEECCCCeEEEEEeCCc-eeee-eecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEccC
Q 040361 300 LYGDDDLSLHLFSINGK-HLAS-SESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPE 377 (413)
Q Consensus 300 ~~~~~d~~i~i~d~~~~-~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~ 377 (413)
++++.|+.|++||++.. .... ..+...+.+++|+|++ ++++++.||.|++||+.+++.+..+..|...|.+++|+|+
T Consensus 263 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~ 341 (425)
T 1r5m_A 263 LSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQD 341 (425)
T ss_dssp EEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTT
T ss_pred EEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCC
Confidence 99999999999999843 3333 3578899999999999 9999999999999999999999999999999999999999
Q ss_pred CeEE-EEcCCCeEEEEEecCCc
Q 040361 378 ECFL-AGTKDGCLLVYSIENRR 398 (413)
Q Consensus 378 ~~~l-~~~~dg~i~vw~~~~~~ 398 (413)
+.++ +++.||.|++|++.+++
T Consensus 342 ~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 342 GQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp SSEEEEEETTSCEEEEECHHHH
T ss_pred CCEEEEEECCCeEEEEECCCCc
Confidence 8665 58999999999998876
No 63
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.5e-36 Score=297.00 Aligned_cols=342 Identities=9% Similarity=0.023 Sum_probs=243.1
Q ss_pred EecCCCCCCeEEEEeecCCcEEEEecCceEEEEEe------eccCCCCCCceeeecCCCCccccCCCcCCCcc-cCC-CC
Q 040361 55 ICSTRHQPSGIVYVGMLDSSIVLVNQGLTLSVKMW------LTTQLQSGGNFTFSGSQDPFFGVGADILSPRN-VGS-PL 126 (413)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~s~~~~~l~~~~~d~~~~~~~~~~~~~~-~~~-~~ 126 (413)
....+.+ +..++++..|+.+.+|+......+..+ ....|+|+++++++|+.|+.+++|+....... ... ..
T Consensus 62 ~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~ 140 (902)
T 2oaj_A 62 KEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNL 140 (902)
T ss_dssp EEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCH
T ss_pred EEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccc
Confidence 3344555 457888888999999987554333322 23468999999999999999999753221100 000 00
Q ss_pred ----cccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecC------------------CCeEEEEEE
Q 040361 127 ----AESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQH------------------RDVVSCVAV 184 (413)
Q Consensus 127 ----~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h------------------~~~v~~~~~ 184 (413)
.....+...+.+++|+|++..++++|+.|+.| +||+.+++.+..+..| ...|.+++|
T Consensus 141 ~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~f 219 (902)
T 2oaj_A 141 QKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLY 219 (902)
T ss_dssp HHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEE
T ss_pred cccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEE
Confidence 11123567889999999876666678889999 9999999999888766 578999999
Q ss_pred CCCCCEEEEccCCCcEEEEEecccccccc------------------------ccccceee---cCCC-ceeeec-----
Q 040361 185 TTDGSILATGSYDTTVMVWEVIRARAPEK------------------------RVRNMQIE---APRK-DYVIVE----- 231 (413)
Q Consensus 185 ~~~~~~l~s~s~dg~i~iw~~~~~~~~~~------------------------~~~~~~~~---~~~~-~~~~~~----- 231 (413)
+|+|++|++|+.||+|++||+.+++.... .+..+.+. .|.. ..++..
T Consensus 220 spdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~ 299 (902)
T 2oaj_A 220 HPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISR 299 (902)
T ss_dssp CTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTT
T ss_pred cCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCC
Confidence 99999999999999999999987653210 01111111 0111 111111
Q ss_pred ---Cceee-----------------------------ee-cCCCCeEEEEEec----------CCCEEEEeeCCCcEEEE
Q 040361 232 ---TPFHI-----------------------------LC-GHDDIITCLYVSV----------ELDIVISGSKDGTCVFH 268 (413)
Q Consensus 232 ---~~~~~-----------------------------~~-~h~~~i~~~~~~~----------~~~~l~s~~~dg~i~vw 268 (413)
..+.. +. .|...|..+.+.+ +...+++++.||.|++|
T Consensus 300 ~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~ 379 (902)
T 2oaj_A 300 GDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETM 379 (902)
T ss_dssp SSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEE
T ss_pred CCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEE
Confidence 01111 11 3466777777755 23478888999999999
Q ss_pred EccCCeEEEE-------EeCC---------------------------------CCCceeeEEEccCCcEEEEECCCCeE
Q 040361 269 TLREGRYVRS-------LCHP---------------------------------SGSALSKLAASRHGRIVLYGDDDLSL 308 (413)
Q Consensus 269 d~~~~~~~~~-------~~~~---------------------------------~~~~v~~~~~~~~~~~l~~~~~d~~i 308 (413)
|+.++..... +..+ +...+..++|+|++++|++++.|++|
T Consensus 380 ~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtV 459 (902)
T 2oaj_A 380 LYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSV 459 (902)
T ss_dssp ETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEE
T ss_pred ECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcE
Confidence 9977753321 0000 11234556778999999999999999
Q ss_pred EEEEeCCceee-----e--------eecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCc------------------
Q 040361 309 HLFSINGKHLA-----S--------SESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLE------------------ 357 (413)
Q Consensus 309 ~i~d~~~~~~~-----~--------~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~------------------ 357 (413)
++||+....+. . ..|...|.+++|+|+|++||+|+.||+|+|||+.+++
T Consensus 460 rlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~ 539 (902)
T 2oaj_A 460 RIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFR 539 (902)
T ss_dssp EEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CC
T ss_pred EEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeee
Confidence 99999743321 1 1567889999999999999999999999999997652
Q ss_pred ---------------------------eEEEecCCCCcEEEEEEccCCeEE-EEcCCCeEEEEEecCCcc
Q 040361 358 ---------------------------VVRRYSGVGKIITSLAVTPEECFL-AGTKDGCLLVYSIENRRT 399 (413)
Q Consensus 358 ---------------------------~~~~~~~~~~~v~~~~~~~~~~~l-~~~~dg~i~vw~~~~~~~ 399 (413)
++..+.+|.+.|++++|+||| +| +|+.|++|++||+++++.
T Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~ 608 (902)
T 2oaj_A 540 RFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAI 608 (902)
T ss_dssp SCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEE
T ss_pred eccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeE
Confidence 367788899999999999999 55 599999999999987654
No 64
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=9.8e-36 Score=265.17 Aligned_cols=255 Identities=14% Similarity=0.119 Sum_probs=210.3
Q ss_pred eecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCC----cEEEEeecCCCeEEEEEECC--CCCEEEEccCCCcEEEEE
Q 040361 131 ELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDG----RVVQSIRQHRDVVSCVAVTT--DGSILATGSYDTTVMVWE 204 (413)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~----~~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~dg~i~iw~ 204 (413)
.|...+.++.|+|+++++++++ .||.|++||+.++ +....+.+|...|.+++|+| ++++|++|+.||.|++||
T Consensus 9 gH~~~v~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd 87 (351)
T 3f3f_A 9 GHDDLVHDVVYDFYGRHVATCS-SDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWE 87 (351)
T ss_dssp CCSSCEEEEEECSSSSEEEEEE-TTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEE
T ss_pred ccccceeEEEEcCCCCEEEEee-CCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEe
Confidence 3567899999999999887754 5999999999876 46778889999999999999 699999999999999999
Q ss_pred eccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecC--CCEEEEeeCCCcEEEEEccCCeEEEEEe--
Q 040361 205 VIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVE--LDIVISGSKDGTCVFHTLREGRYVRSLC-- 280 (413)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~-- 280 (413)
+.++....... ....+..+.+|...|.+++|+|+ ++++++++.||.|++||+++++.+..+.
T Consensus 88 ~~~~~~~~~~~--------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 153 (351)
T 3f3f_A 88 EDPDQEECSGR--------------RWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLT 153 (351)
T ss_dssp ECTTSCTTSSC--------------SEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEE
T ss_pred cCCCccccccc--------------CcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccc
Confidence 98764211000 00146677889999999999999 9999999999999999998876543322
Q ss_pred ----------CCCCCceeeEEEccC---CcEEEEECCCCeEEEEEeCCcee---ee-eecCCceeEEEecCCC----CEE
Q 040361 281 ----------HPSGSALSKLAASRH---GRIVLYGDDDLSLHLFSINGKHL---AS-SESNGRLNCLELSACG----QFL 339 (413)
Q Consensus 281 ----------~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~---~~-~~~~~~i~~~~~s~~~----~~l 339 (413)
..+...+.+++|+|+ +..+++++.++.+.+|+...... .. ..|...|.+++|+|++ ++|
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l 233 (351)
T 3f3f_A 154 SEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLI 233 (351)
T ss_dssp EEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEE
T ss_pred ccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEE
Confidence 123457899999997 89999999999998888774432 22 3578899999999998 899
Q ss_pred EEeCCCCeEEEEECCCC----------------------------------------------ceEEEecCCCCcEEEEE
Q 040361 340 VCGGDQGQIVVRSMNSL----------------------------------------------EVVRRYSGVGKIITSLA 373 (413)
Q Consensus 340 ~~~~~dg~i~v~d~~~~----------------------------------------------~~~~~~~~~~~~v~~~~ 373 (413)
++|+.||.|++||++.+ +.+..+.+|...|++++
T Consensus 234 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 313 (351)
T 3f3f_A 234 ATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVS 313 (351)
T ss_dssp EEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEE
T ss_pred EEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEE
Confidence 99999999999999864 56677888999999999
Q ss_pred EccCCeEE-EEcCCCeEEEEEecCCccc
Q 040361 374 VTPEECFL-AGTKDGCLLVYSIENRRTS 400 (413)
Q Consensus 374 ~~~~~~~l-~~~~dg~i~vw~~~~~~~~ 400 (413)
|+|++.++ +++.||.|++|++.+++..
T Consensus 314 ~s~~~~~l~s~~~dg~v~iw~~~~~~~~ 341 (351)
T 3f3f_A 314 WNLTGTILSSAGDDGKVRLWKATYSNEF 341 (351)
T ss_dssp ECSSSCCEEEEETTSCEEEEEECTTSCE
T ss_pred EcCCCCEEEEecCCCcEEEEecCcCcch
Confidence 99998655 6999999999999987543
No 65
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-37 Score=288.18 Aligned_cols=306 Identities=13% Similarity=0.019 Sum_probs=212.2
Q ss_pred CeEEEEeecCCcEEEEecCceE-------EEE----EeeccCCCCC------CceeeecCCCCccccCCCcCCCcc----
Q 040361 63 SGIVYVGMLDSSIVLVNQGLTL-------SVK----MWLTTQLQSG------GNFTFSGSQDPFFGVGADILSPRN---- 121 (413)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~-------~~~----~~~~~~~s~~------~~~l~~~~~d~~~~~~~~~~~~~~---- 121 (413)
..++..+..|+.+.+|+..... .+. ......|+|+ +.+|++++.|+++++|+.......
T Consensus 173 ~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~ 252 (524)
T 2j04_B 173 LEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVF 252 (524)
T ss_dssp ---------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEE
T ss_pred hhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccc
Confidence 3344555667778888742211 000 0112346665 679999999999999864322110
Q ss_pred --cCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCc-EEEEeecCCCeEEEE--EECCCC-CEEEEcc
Q 040361 122 --VGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGR-VVQSIRQHRDVVSCV--AVTTDG-SILATGS 195 (413)
Q Consensus 122 --~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~-~~~~~~~h~~~v~~~--~~~~~~-~~l~s~s 195 (413)
...+......+...+.++.|++++ . +++|+.||+|++||+.+++ ....+.+|.+.|.++ +|+|++ .+|+||+
T Consensus 253 ~~~~~p~~~l~~h~~~v~sv~~s~~~-~-lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S 330 (524)
T 2j04_B 253 KMCEKPSLTLSLADSLITTFDFLSPT-T-VVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVA 330 (524)
T ss_dssp ECCCSCSEEECCTTTCEEEEEESSSS-E-EEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEE
T ss_pred eeecCceEEEEcCCCCEEEEEecCCC-e-EEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEec
Confidence 111111222345778899998764 4 5567779999999998764 456688999999999 578887 8999999
Q ss_pred CCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCC--CeEEEEEecCCCEEEEeeCCCcEEEEEccCC
Q 040361 196 YDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDD--IITCLYVSVELDIVISGSKDGTCVFHTLREG 273 (413)
Q Consensus 196 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~ 273 (413)
.|++|++||+++++ ....+.+|.. .|.+++|+|+++.+++++.|++|++||++++
T Consensus 331 ~D~tvklWD~~~~~-----------------------~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~ 387 (524)
T 2j04_B 331 VDGYFYIFNPKDIA-----------------------TTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAA 387 (524)
T ss_dssp TTSEEEEECGGGHH-----------------------HHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCT
T ss_pred cCCeEEEEECCCCC-----------------------cccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccc
Confidence 99999999998876 4455666653 5889999999999999999999999999999
Q ss_pred eEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCceeeeee------cCCceeEEEecCCCCEEEEeCCCCe
Q 040361 274 RYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKHLASSE------SNGRLNCLELSACGQFLVCGGDQGQ 347 (413)
Q Consensus 274 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~------~~~~i~~~~~s~~~~~l~~~~~dg~ 347 (413)
.++..+..+ ...|.+++|+|++++|++|+.|++|++||+..+.+.... ....+.+++|+|+++.+.. ..+
T Consensus 388 ~~~~~l~gH-~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~-~~~-- 463 (524)
T 2j04_B 388 FAVHPLVSR-ETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRI-DSS-- 463 (524)
T ss_dssp TCCEEEEEC-SSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEE-CCC--
T ss_pred ccceeeecC-CCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEc-cCC--
Confidence 887777765 568999999999999999999999999998754332211 1225779999999985532 222
Q ss_pred EEEEECC-CCceEEEecCCCCcEEEEEEccCC---eEE-EEcCCCeEEEEEecCC
Q 040361 348 IVVRSMN-SLEVVRRYSGVGKIITSLAVTPEE---CFL-AGTKDGCLLVYSIENR 397 (413)
Q Consensus 348 i~v~d~~-~~~~~~~~~~~~~~v~~~~~~~~~---~~l-~~~~dg~i~vw~~~~~ 397 (413)
+.+|+.. ++..+..+.+|...|.+++|+|++ .++ +|+.||.|+||++.-.
T Consensus 464 ~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 464 YEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp CCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred ceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence 3344332 466778889999999999999995 355 5889999999998653
No 66
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=5e-35 Score=281.01 Aligned_cols=334 Identities=11% Similarity=0.093 Sum_probs=248.3
Q ss_pred EEecCCCCCCe-EEEEeecCCcEEEEecCceEEEEEe----------eccCCCCC-CceeeecCCCCccccCCCcCCCcc
Q 040361 54 IICSTRHQPSG-IVYVGMLDSSIVLVNQGLTLSVKMW----------LTTQLQSG-GNFTFSGSQDPFFGVGADILSPRN 121 (413)
Q Consensus 54 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~s~~-~~~l~~~~~d~~~~~~~~~~~~~~ 121 (413)
+.+..+.+.++ +++++..++.+.+|+.......... ....|+|+ ++++++++.|+.+++|+.....
T Consensus 163 v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-- 240 (615)
T 1pgu_A 163 INACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE-- 240 (615)
T ss_dssp EEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC--
T ss_pred EEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC--
Confidence 34445667766 8899999999999997665544433 23468999 9999999999999997532111
Q ss_pred cCCCC-cccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecC----CCeEEEEEECCCCCEEEEccC
Q 040361 122 VGSPL-AESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQH----RDVVSCVAVTTDGSILATGSY 196 (413)
Q Consensus 122 ~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~l~s~s~ 196 (413)
....+ .....+...+.++.|+ +++.+++++ .|+.|++||+.+++.+..+..+ ...+.++.|. +++++++++.
T Consensus 241 ~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~ 317 (615)
T 1pgu_A 241 FLKYIEDDQEPVQGGIFALSWL-DSQKFATVG-ADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSL 317 (615)
T ss_dssp EEEECCBTTBCCCSCEEEEEES-SSSEEEEEE-TTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEET
T ss_pred EeEEecccccccCCceEEEEEc-CCCEEEEEc-CCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEEC
Confidence 10011 1001557788899999 777777655 5999999999999999998876 4778888886 8999999999
Q ss_pred CCcEEEEEecccccccc------cccccee-------------------------------ecCCCceeee---------
Q 040361 197 DTTVMVWEVIRARAPEK------RVRNMQI-------------------------------EAPRKDYVIV--------- 230 (413)
Q Consensus 197 dg~i~iw~~~~~~~~~~------~~~~~~~-------------------------------~~~~~~~~~~--------- 230 (413)
||.|++||+.+++.... .+..+.+ ..+....++.
T Consensus 318 ~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~ 397 (615)
T 1pgu_A 318 DGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKV 397 (615)
T ss_dssp TSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEE
T ss_pred CCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEE
Confidence 99999999876542111 0000000 0000111110
Q ss_pred ---------------------------------------cCceeeeecCCCCeEEEEEecCCCEEEEeeC-CCcEEEEEc
Q 040361 231 ---------------------------------------ETPFHILCGHDDIITCLYVSVELDIVISGSK-DGTCVFHTL 270 (413)
Q Consensus 231 ---------------------------------------~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~-dg~i~vwd~ 270 (413)
...+..+ .|...+.+++|+ ++++++++. |+.|++||+
T Consensus 398 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~ 474 (615)
T 1pgu_A 398 NGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSV-RLNSPGSAVSLS--QNYVAVGLEEGNTIQVFKL 474 (615)
T ss_dssp TTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEEC--SSEEEEEETTTSCEEEEET
T ss_pred EEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeec-ccCCCceEEEEc--CCEEEEeecCCCeEEEEEC
Confidence 0011111 256677777777 678888888 899999998
Q ss_pred cCCeEE-EEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCC-ceeeee-e-cCCceeEEEecC----------CC
Q 040361 271 REGRYV-RSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSING-KHLASS-E-SNGRLNCLELSA----------CG 336 (413)
Q Consensus 271 ~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~-~-~~~~i~~~~~s~----------~~ 336 (413)
.+++.. ..+.. +...|.+++|+|++++|++++.|+.|++||++. +.+... . |...|++++|+| ++
T Consensus 475 ~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~ 553 (615)
T 1pgu_A 475 SDLEVSFDLKTP-LRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEE 553 (615)
T ss_dssp TEEEEEEECSSC-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSC
T ss_pred CCccccccccCC-ccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCC
Confidence 877655 33333 356899999999999999999999999999984 444433 3 889999999999 99
Q ss_pred CEEEEeCCCCeEEEEECCCC-ceEEEecCCCCcEEEEEEccCCeEEEEcCCCeEEEEEecC
Q 040361 337 QFLVCGGDQGQIVVRSMNSL-EVVRRYSGVGKIITSLAVTPEECFLAGTKDGCLLVYSIEN 396 (413)
Q Consensus 337 ~~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~dg~i~vw~~~~ 396 (413)
++|++++.||.|++||+.++ +.+..+.+|...|++++|+|++.+++++.||.|++|+++.
T Consensus 554 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 554 DLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWNVVL 614 (615)
T ss_dssp CEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTEEEEEETTSCEEEEEEC-
T ss_pred CEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCCeEEecCCceEEEEeeec
Confidence 99999999999999999998 7888899999999999999998855799999999999975
No 67
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.4e-35 Score=288.44 Aligned_cols=246 Identities=14% Similarity=0.252 Sum_probs=211.6
Q ss_pred eecceeEEEEecCCCCEEEEeecCCCeEEEEEcCC-----CcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEe
Q 040361 131 ELGSQCFTTMQTPSENFLITCGNWENSFQVIALND-----GRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEV 205 (413)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~-----~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~ 205 (413)
.|...|.++++++++..++++|+.|+.|++|++.+ +.....+.+|...|.+++|+|++++|++|+.||+|++||+
T Consensus 380 ~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~ 459 (694)
T 3dm0_A 380 AHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDL 459 (694)
T ss_dssp CCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred cCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 45677888999988877777788899999999975 3456788999999999999999999999999999999999
Q ss_pred ccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEe--CCC
Q 040361 206 IRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLC--HPS 283 (413)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~--~~~ 283 (413)
.++. ....+.+|...|.+++|+|++++|++|+.|++|++||+.......... ..+
T Consensus 460 ~~~~-----------------------~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h 516 (694)
T 3dm0_A 460 AAGV-----------------------STRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGH 516 (694)
T ss_dssp TTTE-----------------------EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSC
T ss_pred CCCc-----------------------ceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCC
Confidence 8876 577889999999999999999999999999999999986554433322 223
Q ss_pred CCceeeEEEccCC--cEEEEECCCCeEEEEEeCCceee-e-eecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceE
Q 040361 284 GSALSKLAASRHG--RIVLYGDDDLSLHLFSINGKHLA-S-SESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVV 359 (413)
Q Consensus 284 ~~~v~~~~~~~~~--~~l~~~~~d~~i~i~d~~~~~~~-~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~ 359 (413)
...|.+++|+|++ ..+++++.|+.|++||++..... . ..|.+.|.+++|+|++++|++|+.||.|++||+.+++.+
T Consensus 517 ~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~ 596 (694)
T 3dm0_A 517 RDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKL 596 (694)
T ss_dssp SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEE
T ss_pred CCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceE
Confidence 4579999999986 68999999999999999854433 3 468899999999999999999999999999999999988
Q ss_pred EEecCCCCcEEEEEEccCCeEEEEcCCCeEEEEEecCCccc
Q 040361 360 RRYSGVGKIITSLAVTPEECFLAGTKDGCLLVYSIENRRTS 400 (413)
Q Consensus 360 ~~~~~~~~~v~~~~~~~~~~~l~~~~dg~i~vw~~~~~~~~ 400 (413)
..+. +...|.+++|+|++.+++++.|+.|++||+++++..
T Consensus 597 ~~~~-~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~ 636 (694)
T 3dm0_A 597 YSLE-ANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIV 636 (694)
T ss_dssp ECCB-CSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEE
T ss_pred EEec-CCCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCCh
Confidence 8876 456799999999999998778888999999887543
No 68
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=2.7e-35 Score=292.07 Aligned_cols=280 Identities=14% Similarity=0.197 Sum_probs=241.6
Q ss_pred cCCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEE
Q 040361 92 TQLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQS 171 (413)
Q Consensus 92 ~~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~ 171 (413)
.+|+|+|+++++++.|+.+++|+... . ........+...+.++.|+|+++.+++++. ||.|++||+.+++.+..
T Consensus 19 i~~sp~~~~la~~~~~g~v~iwd~~~--~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vw~~~~~~~~~~ 92 (814)
T 3mkq_A 19 IDFHPTEPWVLTTLYSGRVEIWNYET--Q---VEVRSIQVTETPVRAGKFIARKNWIIVGSD-DFRIRVFNYNTGEKVVD 92 (814)
T ss_dssp EEECSSSSEEEEEETTSEEEEEETTT--T---EEEEEEECCSSCEEEEEEEGGGTEEEEEET-TSEEEEEETTTCCEEEE
T ss_pred EEECCCCCEEEEEeCCCEEEEEECCC--C---ceEEEEecCCCcEEEEEEeCCCCEEEEEeC-CCeEEEEECCCCcEEEE
Confidence 35689999999999999999974211 1 111222235678999999999998888655 99999999999999999
Q ss_pred eecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEec
Q 040361 172 IRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSV 251 (413)
Q Consensus 172 ~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~ 251 (413)
+.+|.+.|++++|+|++++|++++.||.|++||+.++. .....+.+|...|.+++|+|
T Consensus 93 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~----------------------~~~~~~~~~~~~v~~~~~~p 150 (814)
T 3mkq_A 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW----------------------ALEQTFEGHEHFVMCVAFNP 150 (814)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTS----------------------EEEEEEECCSSCEEEEEEET
T ss_pred EecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCc----------------------eEEEEEcCCCCcEEEEEEEc
Confidence 99999999999999999999999999999999998763 14667889999999999999
Q ss_pred -CCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEcc--CCcEEEEECCCCeEEEEEeCCce-eee-eecCCc
Q 040361 252 -ELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASR--HGRIVLYGDDDLSLHLFSINGKH-LAS-SESNGR 326 (413)
Q Consensus 252 -~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~-~~~-~~~~~~ 326 (413)
+++.+++++.||.|++||+.++.....+..++...+..++|+| ++.++++++.|+.|++||++... +.. ..+...
T Consensus 151 ~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~ 230 (814)
T 3mkq_A 151 KDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSN 230 (814)
T ss_dssp TEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSC
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCC
Confidence 8889999999999999999998888888776667899999999 99999999999999999998443 333 357889
Q ss_pred eeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEccCCe--EEEEcCCCeEEEEEecCCcc
Q 040361 327 LNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEEC--FLAGTKDGCLLVYSIENRRT 399 (413)
Q Consensus 327 i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~dg~i~vw~~~~~~~ 399 (413)
+.+++|+|+++++++++.||.|++||+.+++.+..+..|...+.+++|+|++. +++++.++.+.+|++.....
T Consensus 231 v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (814)
T 3mkq_A 231 VSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEP 305 (814)
T ss_dssp EEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSC
T ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCc
Confidence 99999999999999999999999999999999999999999999999999975 57777778899999876543
No 69
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=9.3e-35 Score=255.81 Aligned_cols=274 Identities=16% Similarity=0.171 Sum_probs=217.7
Q ss_pred CCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEee
Q 040361 94 LQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIR 173 (413)
Q Consensus 94 ~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~ 173 (413)
+|+++ +|++| .|+++++|+..... ... ....-.+...+.++.|+|+++++++ |+.|+.|++||+++++.+..+.
T Consensus 33 WS~~~-~lAvg-~D~tV~iWd~~tg~--~~~-~~~~~~~~~~V~~v~~~~~~~~l~s-gs~Dg~v~iw~~~~~~~~~~~~ 106 (318)
T 4ggc_A 33 WSSGN-VLAVA-LDNSVYLWSASSGD--ILQ-LLQMEQPGEYISSVAWIKEGNYLAV-GTSSAEVQLWDVQQQKRLRNMT 106 (318)
T ss_dssp ECTTS-EEEEE-ETTEEEEEETTTCC--EEE-EEECCSTTCCEEEEEECTTSSEEEE-EETTSEEEEEETTTTEEEEEEE
T ss_pred ECCCC-EEEEE-eCCEEEEEECCCCC--EEE-EEEecCCCCeEEEEEECCCCCEEEE-EECCCcEEEeecCCceeEEEec
Confidence 45554 55554 58888886422110 000 0011123556889999999998877 5559999999999999999999
Q ss_pred cCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCC
Q 040361 174 QHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVEL 253 (413)
Q Consensus 174 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~ 253 (413)
+|...+.++.+ ++..+++++.++.+++|+..... ..+..+.+|...+..+.+++++
T Consensus 107 ~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~ 162 (318)
T 4ggc_A 107 SHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAE----------------------HHVATLSGHSQEVCGLRWAPDG 162 (318)
T ss_dssp CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSS----------------------CEEEEEECCSSCEEEEEECTTS
T ss_pred CccceEEEeec--CCCEEEEEecCCceEeeecCCCc----------------------eeEEEEcCccCceEEEEEcCCC
Confidence 99999887766 56799999999999999987765 2567788999999999999999
Q ss_pred CEEEEeeCCCcEEEEEccCCeEE----EEEeCCCCCceeeEEEccCCcE---EEEECCCCeEEEEEeCC-ceeeeeecCC
Q 040361 254 DIVISGSKDGTCVFHTLREGRYV----RSLCHPSGSALSKLAASRHGRI---VLYGDDDLSLHLFSING-KHLASSESNG 325 (413)
Q Consensus 254 ~~l~s~~~dg~i~vwd~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~---l~~~~~d~~i~i~d~~~-~~~~~~~~~~ 325 (413)
+++++++.|+.|++||+++++.. .... .....+..+++++++.. +++++.++.|++||.+. .......+..
T Consensus 163 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~ 241 (318)
T 4ggc_A 163 RHLASGGNDNLVNVWPSAPGEGGWVPLQTFT-QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS 241 (318)
T ss_dssp SEEEEEETTSCEEEEESSCBTTBSCCSEEEC-CCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSS
T ss_pred CEEEEEecCcceeEEECCCCcccccceeeec-ccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccccee
Confidence 99999999999999999876532 2222 23457899999986543 34677889999999984 4444567788
Q ss_pred ceeEEEecCCCCEEEEe--CCCCeEEEEECCCCceEEEecCCCCcEEEEEEccCCeEE-EEcCCCeEEEEEecCCc
Q 040361 326 RLNCLELSACGQFLVCG--GDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFL-AGTKDGCLLVYSIENRR 398 (413)
Q Consensus 326 ~i~~~~~s~~~~~l~~~--~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~dg~i~vw~~~~~~ 398 (413)
.+..+.|+|+++.++++ +.|+.|++||+.+++++.++.+|.+.|++++|+|++.+| +|+.||+|++||+.+..
T Consensus 242 ~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 242 QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred eeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 89999999999987764 479999999999999999999999999999999998655 69999999999997653
No 70
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=3.9e-35 Score=265.29 Aligned_cols=244 Identities=10% Similarity=0.109 Sum_probs=205.1
Q ss_pred eecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEee--cCCCeEEEEEECC-CCCEEEEccCCCcEEEEEecc
Q 040361 131 ELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIR--QHRDVVSCVAVTT-DGSILATGSYDTTVMVWEVIR 207 (413)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~--~h~~~v~~~~~~~-~~~~l~s~s~dg~i~iw~~~~ 207 (413)
.+...+.++.|+|++..++++|+.||.|++||+.+++....+. +|...|.+++|+| ++++|++++.|+.|++||+.+
T Consensus 71 ~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 150 (383)
T 3ei3_B 71 PFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG 150 (383)
T ss_dssp CCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS
T ss_pred CCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC
Confidence 4567889999999994444456669999999999988887776 6999999999999 789999999999999999975
Q ss_pred ccccccccccceeecCCCceeeecCceeeee---cCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCC
Q 040361 208 ARAPEKRVRNMQIEAPRKDYVIVETPFHILC---GHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSG 284 (413)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 284 (413)
.. ...+. +|...|.+++|+|+++++++++.|+.|++||+ +++.+..+..+ .
T Consensus 151 ~~------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h-~ 204 (383)
T 3ei3_B 151 SV------------------------IQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLH-K 204 (383)
T ss_dssp CE------------------------EEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECS-S
T ss_pred Cc------------------------eEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccC-C
Confidence 32 33343 34588999999999999999999999999999 57778888765 4
Q ss_pred CceeeEEEccCCc-EEEEECCCCeEEEEEeCC-----ceeeeeecCCceeEEEecC-CCCEEEEeCCCCeEEEEECCCCc
Q 040361 285 SALSKLAASRHGR-IVLYGDDDLSLHLFSING-----KHLASSESNGRLNCLELSA-CGQFLVCGGDQGQIVVRSMNSLE 357 (413)
Q Consensus 285 ~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~-----~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~v~d~~~~~ 357 (413)
..|.+++|+|++. ++++++.|+.|++||++. ..+....+...+.+++|+| ++++|++++.||.|++||+++++
T Consensus 205 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~ 284 (383)
T 3ei3_B 205 AKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWS 284 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTT
T ss_pred CcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCc
Confidence 5899999999998 999999999999999973 3444567899999999999 99999999999999999999887
Q ss_pred eEEEecCCC-----------------CcEEEEEEccCCeEEEEcCCCeEEEEEecCCcccc
Q 040361 358 VVRRYSGVG-----------------KIITSLAVTPEECFLAGTKDGCLLVYSIENRRTSL 401 (413)
Q Consensus 358 ~~~~~~~~~-----------------~~v~~~~~~~~~~~l~~~~dg~i~vw~~~~~~~~~ 401 (413)
....+.+|. ..+..++|+|++++ +++.||.|++||+.+++...
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~ 344 (383)
T 3ei3_B 285 KPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANSGGLVH 344 (383)
T ss_dssp SCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTTCCEEE
T ss_pred cccccccccccccccccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecCCCceee
Confidence 766665442 34555777777777 77899999999999876543
No 71
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=5.7e-35 Score=271.05 Aligned_cols=295 Identities=16% Similarity=0.250 Sum_probs=229.8
Q ss_pred CCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCC
Q 040361 97 GGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHR 176 (413)
Q Consensus 97 ~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~ 176 (413)
+++++++|+.|+.+++|+.... ........|...+.++.|++++ ++++|+.||.|++||+.+++.+..+.+|.
T Consensus 131 ~~~~l~sgs~dg~i~vwd~~~~-----~~~~~~~~h~~~V~~l~~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~~h~ 203 (464)
T 3v7d_B 131 EDNYVITGADDKMIRVYDSINK-----KFLLQLSGHDGGVWALKYAHGG--ILVSGSTDRTVRVWDIKKGCCTHVFEGHN 203 (464)
T ss_dssp ETTEEEEEETTSCEEEEETTTT-----EEEEEECCCSSCEEEEEECSTT--EEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred CCCEEEEEcCCCcEEEEECCCC-----cEEEEEeCCCcCEEEEEEcCCC--EEEEEeCCCCEEEEECCCCcEEEEECCCC
Confidence 4678999999999999753211 1112222467788999998887 55557779999999999999999999999
Q ss_pred CeEEEEEEC--CCCCEEEEccCCCcEEEEEeccccccccccccc----eeecCCCceeeecCceeeeecCCCCeEEEEEe
Q 040361 177 DVVSCVAVT--TDGSILATGSYDTTVMVWEVIRARAPEKRVRNM----QIEAPRKDYVIVETPFHILCGHDDIITCLYVS 250 (413)
Q Consensus 177 ~~v~~~~~~--~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~ 250 (413)
+.|.+++|+ +++++|++|+.||.|++||+.+........... ....+.. .......+.+|...+.++ +
T Consensus 204 ~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~v~~~--~ 277 (464)
T 3v7d_B 204 STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEE----NPYFVGVLRGHMASVRTV--S 277 (464)
T ss_dssp SCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGG----CTTEEEEECCCSSCEEEE--E
T ss_pred CccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCC----CeEEEEEccCccceEEEE--c
Confidence 999999998 578999999999999999998765322110000 0000000 001255678899998887 5
Q ss_pred cCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeC-Cceeee-eecCCcee
Q 040361 251 VELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSIN-GKHLAS-SESNGRLN 328 (413)
Q Consensus 251 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~-~~~~~~i~ 328 (413)
++++++++++.||.|++||+++++.+..+..+ ...|.+++|+|+++++++++.|+.|++||++ ++.+.. ..|...+.
T Consensus 278 ~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~ 356 (464)
T 3v7d_B 278 GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGH-TDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVG 356 (464)
T ss_dssp EETTEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEE
Confidence 77889999999999999999999999988766 4689999999999999999999999999997 444444 36888999
Q ss_pred EEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEccCCeEEEEcCCCeEEEEEecCCccccccccccc
Q 040361 329 CLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFLAGTKDGCLLVYSIENRRTSLPRNVKSK 408 (413)
Q Consensus 329 ~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~dg~i~vw~~~~~~~~~~~~~~~~ 408 (413)
+++|+ +++|++|+.||.|++||+.+++...... +...+..++|++++.+++++.||.|++||+++++........+.
T Consensus 357 ~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g~~~~~~~~~~~ 433 (464)
T 3v7d_B 357 LLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDA 433 (464)
T ss_dssp EEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEETTEEEEEETTTCCEEESCTTTTC
T ss_pred EEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEecCCeEEEEECCCCcEEehhhccCC
Confidence 99997 6899999999999999999988776664 66778888999998888644599999999999876644333333
No 72
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=3.1e-35 Score=263.10 Aligned_cols=247 Identities=19% Similarity=0.289 Sum_probs=209.4
Q ss_pred ecceeEEEEecCCCCEEEEeecC---CCeEEEEEcCCCcEEEEee-cCCCeEEEEEECCC---CCEEEEccCCCcEEEEE
Q 040361 132 LGSQCFTTMQTPSENFLITCGNW---ENSFQVIALNDGRVVQSIR-QHRDVVSCVAVTTD---GSILATGSYDTTVMVWE 204 (413)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~g~~---d~~i~i~~~~~~~~~~~~~-~h~~~v~~~~~~~~---~~~l~s~s~dg~i~iw~ 204 (413)
|...+.++.|+|++..++++|+. |+.|++||+.+++...... +|...|.+++|+|+ +++|++|+.||.|++||
T Consensus 17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd 96 (357)
T 3i2n_A 17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWN 96 (357)
T ss_dssp CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEEC
T ss_pred CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEe
Confidence 56789999999999999988876 8999999999988765543 69999999999998 69999999999999999
Q ss_pred eccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEE------ecCCCEEEEeeCCCcEEEEEccCCe-EEE
Q 040361 205 VIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYV------SVELDIVISGSKDGTCVFHTLREGR-YVR 277 (413)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~------~~~~~~l~s~~~dg~i~vwd~~~~~-~~~ 277 (413)
+.+++ .++..+.+|...|.+++| ++++++|++++.||.|++||+++++ .+.
T Consensus 97 ~~~~~----------------------~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~ 154 (357)
T 3i2n_A 97 LEAPE----------------------MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVA 154 (357)
T ss_dssp TTSCS----------------------SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSE
T ss_pred CCCCC----------------------ccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcce
Confidence 98765 146678899999999965 6789999999999999999999887 666
Q ss_pred EEeCCC---CCceeeEE----EccCCcEEEEECCCCeEEEEEeCCcee-eeeecCCceeEEEecC---CCCEEEEeCCCC
Q 040361 278 SLCHPS---GSALSKLA----ASRHGRIVLYGDDDLSLHLFSINGKHL-ASSESNGRLNCLELSA---CGQFLVCGGDQG 346 (413)
Q Consensus 278 ~~~~~~---~~~v~~~~----~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~i~~~~~s~---~~~~l~~~~~dg 346 (413)
.+..+. ...+.+++ |++++.++++++.|+.|++||++.... ....+...+.+++|+| +++++++++.||
T Consensus 155 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 234 (357)
T 3i2n_A 155 NMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEG 234 (357)
T ss_dssp EECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTT
T ss_pred eccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCC
Confidence 665433 23788888 788999999999999999999985444 4467889999999999 999999999999
Q ss_pred eEEEEECCCCceEEEec-----CCCCcEEEEEEccCCe--EEEEcCCCeEEEEEecCCccc
Q 040361 347 QIVVRSMNSLEVVRRYS-----GVGKIITSLAVTPEEC--FLAGTKDGCLLVYSIENRRTS 400 (413)
Q Consensus 347 ~i~v~d~~~~~~~~~~~-----~~~~~v~~~~~~~~~~--~l~~~~dg~i~vw~~~~~~~~ 400 (413)
.|++||+++++.+..+. +|...|.+++|+|++. +++++.||.|++||+.++...
T Consensus 235 ~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 295 (357)
T 3i2n_A 235 KFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQR 295 (357)
T ss_dssp EEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC
T ss_pred eEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccc
Confidence 99999998876655444 8999999999999976 446999999999999876543
No 73
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=6.1e-34 Score=262.66 Aligned_cols=296 Identities=20% Similarity=0.352 Sum_probs=239.1
Q ss_pred CCeEEEEeecCCcEEEEecCceEEEEEeecc-----CCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceeccee
Q 040361 62 PSGIVYVGMLDSSIVLVNQGLTLSVKMWLTT-----QLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQC 136 (413)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (413)
.+..++++..++.+.+|+.......+.+... ....+++++++|+.|+.+++|+.... ........+...+
T Consensus 128 ~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~-----~~~~~~~~h~~~v 202 (445)
T 2ovr_B 128 CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETG-----ECIHTLYGHTSTV 202 (445)
T ss_dssp ETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETTTT-----EEEEEECCCSSCE
T ss_pred cCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecCCEEEEEeCCCeEEEEECCcC-----cEEEEECCCCCcE
Confidence 4678889999999999997655444433211 11223679999999999999753211 1111122345567
Q ss_pred EEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccc
Q 040361 137 FTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVR 216 (413)
Q Consensus 137 ~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~ 216 (413)
.++.+. ++.+++ |+.||.|++||+.+++.+..+.+|...|.+++| ++++|++|+.||.|++||+.+++
T Consensus 203 ~~~~~~--~~~l~s-~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~------- 270 (445)
T 2ovr_B 203 RCMHLH--EKRVVS-GSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETET------- 270 (445)
T ss_dssp EEEEEE--TTEEEE-EETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTE-------
T ss_pred EEEEec--CCEEEE-EeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCc-------
Confidence 777664 455555 666999999999999999999999999999999 78899999999999999998876
Q ss_pred cceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCC
Q 040361 217 NMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHG 296 (413)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 296 (413)
.+..+.+|...|.+++| ++.++++++.||.|++||+++++.+..+..+ ...+.++.+ ++
T Consensus 271 ----------------~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~v~~~~~--~~ 329 (445)
T 2ovr_B 271 ----------------CLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGH-QSLTSGMEL--KD 329 (445)
T ss_dssp ----------------EEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCC-CSCEEEEEE--ET
T ss_pred ----------------EeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCC-cccEEEEEE--eC
Confidence 67788899999999999 7889999999999999999999999988766 346666665 56
Q ss_pred cEEEEECCCCeEEEEEeC-Cceeeeee----cCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEe-----cCCC
Q 040361 297 RIVLYGDDDLSLHLFSIN-GKHLASSE----SNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRY-----SGVG 366 (413)
Q Consensus 297 ~~l~~~~~d~~i~i~d~~-~~~~~~~~----~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~-----~~~~ 366 (413)
+++++++.||.|++||++ ++.+.... +...|.+++|+ ++++++|+.||.|++||+.+++.+..+ ..|.
T Consensus 330 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 407 (445)
T 2ovr_B 330 NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSG 407 (445)
T ss_dssp TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCC
Confidence 799999999999999997 44444432 77889999995 689999999999999999999998888 4678
Q ss_pred CcEEEEEEccCCeEE-EEcCCCe----EEEEEecCC
Q 040361 367 KIITSLAVTPEECFL-AGTKDGC----LLVYSIENR 397 (413)
Q Consensus 367 ~~v~~~~~~~~~~~l-~~~~dg~----i~vw~~~~~ 397 (413)
+.|.+++|+|++.++ +|+.||+ |.+||++..
T Consensus 408 ~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 408 GVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp CEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred ceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 899999999998877 5889997 999999764
No 74
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-34 Score=260.42 Aligned_cols=245 Identities=12% Similarity=0.178 Sum_probs=205.2
Q ss_pred ceecceeEEEEecCCCCEEEEeecCCCeEEEEEcC--CCcEEEEeecCCCeEEEEEECCC--CCEEEEccCCCcEEEEEe
Q 040361 130 FELGSQCFTTMQTPSENFLITCGNWENSFQVIALN--DGRVVQSIRQHRDVVSCVAVTTD--GSILATGSYDTTVMVWEV 205 (413)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~s~dg~i~iw~~ 205 (413)
..|...+.+++|+|+++++++++ .||.|++||+. +++.+..+.+|...|++++|+++ +++|++|+.||.|++||+
T Consensus 8 ~~h~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~ 86 (379)
T 3jrp_A 8 NAHNELIHDAVLDYYGKRLATCS-SDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKE 86 (379)
T ss_dssp EECCCCEEEEEECSSSSEEEEEE-TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEE
T ss_pred cCCcccEEEEEEcCCCCEEEEEE-CCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEc
Confidence 34577889999999999887754 59999999997 56777889999999999999987 999999999999999999
Q ss_pred ccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecC--CCEEEEeeCCCcEEEEEccCCeE--EEEEeC
Q 040361 206 IRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVE--LDIVISGSKDGTCVFHTLREGRY--VRSLCH 281 (413)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~ 281 (413)
.+++. ..+..+..|...|.+++|+|+ ++++++++.|+.|++||++++.. ...+..
T Consensus 87 ~~~~~---------------------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 145 (379)
T 3jrp_A 87 ENGRW---------------------SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDA 145 (379)
T ss_dssp ETTEE---------------------EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEEC
T ss_pred CCCce---------------------eEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecC
Confidence 87641 135667789999999999999 89999999999999999988743 334444
Q ss_pred CCCCceeeEEEcc-------------CCcEEEEECCCCeEEEEEeCCc-e---e--eeeecCCceeEEEecCC---CCEE
Q 040361 282 PSGSALSKLAASR-------------HGRIVLYGDDDLSLHLFSINGK-H---L--ASSESNGRLNCLELSAC---GQFL 339 (413)
Q Consensus 282 ~~~~~v~~~~~~~-------------~~~~l~~~~~d~~i~i~d~~~~-~---~--~~~~~~~~i~~~~~s~~---~~~l 339 (413)
+ ...|.+++|+| ++.++++++.|+.|++||++.. . . ....|...|.+++|+|+ +++|
T Consensus 146 ~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l 224 (379)
T 3jrp_A 146 H-AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYL 224 (379)
T ss_dssp C-TTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEE
T ss_pred C-CCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeE
Confidence 3 56899999999 6999999999999999999732 1 1 12357889999999999 8999
Q ss_pred EEeCCCCeEEEEECCCCc---eEE--EecCCCCcEEEEEEccCCeEE-EEcCCCeEEEEEecCC
Q 040361 340 VCGGDQGQIVVRSMNSLE---VVR--RYSGVGKIITSLAVTPEECFL-AGTKDGCLLVYSIENR 397 (413)
Q Consensus 340 ~~~~~dg~i~v~d~~~~~---~~~--~~~~~~~~v~~~~~~~~~~~l-~~~~dg~i~vw~~~~~ 397 (413)
++++.||.|++||+.++. ... ....|...|.+++|+|++.++ +++.||.|++|++..+
T Consensus 225 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 225 ASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp EEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred EEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 999999999999999864 222 223488899999999998655 6889999999999853
No 75
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=4.3e-34 Score=254.01 Aligned_cols=244 Identities=19% Similarity=0.300 Sum_probs=210.2
Q ss_pred eecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCc-----EEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEe
Q 040361 131 ELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGR-----VVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEV 205 (413)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~-----~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~ 205 (413)
+|.+.|.+++|+|++..++++|+.|++|+|||+.+++ ....+.+|...|.+++|+|++++|++|+.|+.|++|+.
T Consensus 36 GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~ 115 (340)
T 4aow_A 36 GHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDL 115 (340)
T ss_dssp CCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred CccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEee
Confidence 4678899999999866566667779999999987643 56788899999999999999999999999999999999
Q ss_pred ccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCC
Q 040361 206 IRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGS 285 (413)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 285 (413)
.... .......+...+....++++++++++++.|+.+++||+............+..
T Consensus 116 ~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~ 172 (340)
T 4aow_A 116 TTGT-----------------------TTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSE 172 (340)
T ss_dssp TTTE-----------------------EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSS
T ss_pred cccc-----------------------eeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccC
Confidence 8776 45666778888999999999999999999999999999877665554444456
Q ss_pred ceeeEEEccCC--cEEEEECCCCeEEEEEeCCceeee--eecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEE
Q 040361 286 ALSKLAASRHG--RIVLYGDDDLSLHLFSINGKHLAS--SESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRR 361 (413)
Q Consensus 286 ~v~~~~~~~~~--~~l~~~~~d~~i~i~d~~~~~~~~--~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~ 361 (413)
.+..+++++++ .++++++.|+.|++||++...... ..|...|++++|+|++++|++|+.||.|++||+++.+.+..
T Consensus 173 ~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~ 252 (340)
T 4aow_A 173 WVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYT 252 (340)
T ss_dssp CEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEE
T ss_pred cccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeee
Confidence 88999998764 578899999999999998544433 46888999999999999999999999999999999999988
Q ss_pred ecCCCCcEEEEEEccCCeEEEEcCCCeEEEEEecCCc
Q 040361 362 YSGVGKIITSLAVTPEECFLAGTKDGCLLVYSIENRR 398 (413)
Q Consensus 362 ~~~~~~~v~~~~~~~~~~~l~~~~dg~i~vw~~~~~~ 398 (413)
+.. ...|.++.|+|++.+++++.|+.|++||++++.
T Consensus 253 ~~~-~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~ 288 (340)
T 4aow_A 253 LDG-GDIINALCFSPNRYWLCAATGPSIKIWDLEGKI 288 (340)
T ss_dssp EEC-SSCEEEEEECSSSSEEEEEETTEEEEEETTTTE
T ss_pred ecC-CceEEeeecCCCCceeeccCCCEEEEEECCCCe
Confidence 874 468999999999999999999999999998764
No 76
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-34 Score=252.70 Aligned_cols=243 Identities=17% Similarity=0.228 Sum_probs=211.0
Q ss_pred eecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccc
Q 040361 131 ELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARA 210 (413)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~ 210 (413)
.|...+.++.| ++++++++ |+.||.|++||+.+++....+..|...|.+++|+|++++|++|+.||.|++|++.....
T Consensus 16 ~h~~~v~~~~~-~~~~~l~s-~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~ 93 (313)
T 3odt_A 16 GHDQDVRDVVA-VDDSKVAS-VSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSG 93 (313)
T ss_dssp CCSSCEEEEEE-EETTEEEE-EETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTT
T ss_pred CCCCCcEEEEe-cCCCEEEE-EEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCC
Confidence 34667888888 88888776 45599999999999999999999999999999999999999999999999999876541
Q ss_pred cccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeE
Q 040361 211 PEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKL 290 (413)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~ 290 (413)
. .....+.+|...|.+++| +++++++++.||.|++|| .++....+..+ ...+.++
T Consensus 94 ~--------------------~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~-~~~v~~~ 148 (313)
T 3odt_A 94 E--------------------DPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAH-NASVWDA 148 (313)
T ss_dssp S--------------------CC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECC-SSCEEEE
T ss_pred C--------------------CcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccC-CCceeEE
Confidence 1 146677899999999999 567999999999999999 67777777765 4589999
Q ss_pred EEcc-CCcEEEEECCCCeEEEEEeCCceeeeee-cCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCc
Q 040361 291 AASR-HGRIVLYGDDDLSLHLFSINGKHLASSE-SNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKI 368 (413)
Q Consensus 291 ~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~ 368 (413)
.+.| +++.+++++.|+.|++||.......... +...+.+++|+|++. +++++.||.|++||+++++.+..+.+|...
T Consensus 149 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 227 (313)
T 3odt_A 149 KVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESF 227 (313)
T ss_dssp EEEETTTTEEEEEETTSCEEEEETTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred EEccCCCCEEEEEECCCCEEEEecCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCce
Confidence 9988 8999999999999999995533333333 788999999999998 899999999999999999999999999999
Q ss_pred EEEEEEccCCeEEEEcCCCeEEEEEecCCcccc
Q 040361 369 ITSLAVTPEECFLAGTKDGCLLVYSIENRRTSL 401 (413)
Q Consensus 369 v~~~~~~~~~~~l~~~~dg~i~vw~~~~~~~~~ 401 (413)
|.+++|+|++++++++.||.|++||+.+++...
T Consensus 228 i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~ 260 (313)
T 3odt_A 228 VYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQ 260 (313)
T ss_dssp EEEEEECTTSCEEEEETTSEEEEECTTTCCEEE
T ss_pred EEEEEEecCCCEEEEecCCEEEEEECCCCceeE
Confidence 999999999988899999999999999886543
No 77
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=2.1e-35 Score=272.67 Aligned_cols=285 Identities=12% Similarity=0.134 Sum_probs=207.0
Q ss_pred cCCCCCCceeeecCCCCccccCCCcCCCcc-----cCC-CCcccceec------------ceeEEEEecCCC--CEEEEe
Q 040361 92 TQLQSGGNFTFSGSQDPFFGVGADILSPRN-----VGS-PLAESFELG------------SQCFTTMQTPSE--NFLITC 151 (413)
Q Consensus 92 ~~~s~~~~~l~~~~~d~~~~~~~~~~~~~~-----~~~-~~~~~~~~~------------~~~~~~~~~~~~--~~l~~~ 151 (413)
.+|+|+|++|++|+.|+.+++|+....... ... .......|. ..+.++.|+|++ ..+++
T Consensus 34 v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s- 112 (447)
T 3dw8_B 34 VEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLL- 112 (447)
T ss_dssp EEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEE-
T ss_pred EEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEE-
Confidence 346777888888888888888643211100 000 011111222 668999999998 56666
Q ss_pred ecCCCeEEEEEcCCCcEE---------------------------------------EE-eecCCCeEEEEEECCCCCEE
Q 040361 152 GNWENSFQVIALNDGRVV---------------------------------------QS-IRQHRDVVSCVAVTTDGSIL 191 (413)
Q Consensus 152 g~~d~~i~i~~~~~~~~~---------------------------------------~~-~~~h~~~v~~~~~~~~~~~l 191 (413)
++.|+.|++||+.+++.. .. ..+|...|.+++|+|++++|
T Consensus 113 ~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 192 (447)
T 3dw8_B 113 STNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETY 192 (447)
T ss_dssp EECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEE
T ss_pred eCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEE
Confidence 456999999998764432 12 35799999999999999999
Q ss_pred EEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCC-CEEEEeeCCCcEEEEEc
Q 040361 192 ATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVEL-DIVISGSKDGTCVFHTL 270 (413)
Q Consensus 192 ~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~-~~l~s~~~dg~i~vwd~ 270 (413)
++| .|+.|++||+.........+ ......+.+|...|++++|+|++ ++|++|+.||.|++||+
T Consensus 193 ~s~-~d~~i~iwd~~~~~~~~~~~---------------~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~ 256 (447)
T 3dw8_B 193 LSA-DDLRINLWHLEITDRSFNIV---------------DIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDM 256 (447)
T ss_dssp EEE-CSSEEEEEETTEEEEEEEEE---------------ECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred EEe-CCCeEEEEECCCCCceeeee---------------ecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEEC
Confidence 999 79999999998443100000 00011366899999999999998 99999999999999999
Q ss_pred cCCeE----EEEEeCCCC-----------CceeeEEEccCCcEEEEECCCCeEEEEEeCC--ceeeeeecCCc-------
Q 040361 271 REGRY----VRSLCHPSG-----------SALSKLAASRHGRIVLYGDDDLSLHLFSING--KHLASSESNGR------- 326 (413)
Q Consensus 271 ~~~~~----~~~~~~~~~-----------~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~--~~~~~~~~~~~------- 326 (413)
++++. +..+..+.. ..|.+++|+|++++|++++. +.|++||++. +.+........
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~ 335 (447)
T 3dw8_B 257 RASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCS 335 (447)
T ss_dssp TTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHH
T ss_pred cCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccc
Confidence 99886 677766543 27999999999999999998 9999999973 33333322222
Q ss_pred ---------eeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEec---------------------------------C
Q 040361 327 ---------LNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYS---------------------------------G 364 (413)
Q Consensus 327 ---------i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~---------------------------------~ 364 (413)
+..++|+|++++|++|+.||.|++||+.+++.+. +. .
T Consensus 336 ~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (447)
T 3dw8_B 336 LYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLD 414 (447)
T ss_dssp HHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCC
T ss_pred cccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeecccccccccccCCccccccCCcccccccccccc
Confidence 3349999999999999999999999999887653 22 2
Q ss_pred CCCcEEEEEEccCCeEEEEcCCCeEEEEEec
Q 040361 365 VGKIITSLAVTPEECFLAGTKDGCLLVYSIE 395 (413)
Q Consensus 365 ~~~~v~~~~~~~~~~~l~~~~dg~i~vw~~~ 395 (413)
+...|..++|+|++.+++.+..+.+++|.-+
T Consensus 415 ~~~~i~~~~~~p~~~~la~~~~~~~~~~~~~ 445 (447)
T 3dw8_B 415 FNKKILHTAWHPKENIIAVATTNNLYIFQDK 445 (447)
T ss_dssp TTSCCCEEEECSSSSEEEEECSSCEEEEECC
T ss_pred cCCceeEEEECCCCCEEEEEecceeeeeccc
Confidence 3456889999999988875555568888743
No 78
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=8.7e-35 Score=264.24 Aligned_cols=249 Identities=15% Similarity=0.161 Sum_probs=208.7
Q ss_pred eecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCc------EEEEeecCCCeEEEEEECCC----C---CEEEEccCC
Q 040361 131 ELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGR------VVQSIRQHRDVVSCVAVTTD----G---SILATGSYD 197 (413)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~------~~~~~~~h~~~v~~~~~~~~----~---~~l~s~s~d 197 (413)
.|...+.++.|+| +.+++ |+.||.|++|++.+++ ....+.+|...|.+++|+|+ + ++|++++.|
T Consensus 14 ~h~~~i~~~~~~~--~~l~s-~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~d 90 (397)
T 1sq9_A 14 AHDADIFSVSACN--SFTVS-CSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFS 90 (397)
T ss_dssp CSSSCEEEEEECS--SEEEE-EETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETT
T ss_pred hhhcCeEEEEecC--CeEEE-EcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCC
Confidence 3567888999988 55555 5669999999999888 78888999999999999999 9 999999999
Q ss_pred CcEEEEEeccccccccccccceeecCCCceeeecCceeeeecC-----CCCeEEEEEe----cCCCE-EEEeeCCCcEEE
Q 040361 198 TTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGH-----DDIITCLYVS----VELDI-VISGSKDGTCVF 267 (413)
Q Consensus 198 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-----~~~i~~~~~~----~~~~~-l~s~~~dg~i~v 267 (413)
|.|++|++.++...... ....+..| ...|.+++|+ |++++ |++++.||.|++
T Consensus 91 g~i~iw~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~i 152 (397)
T 1sq9_A 91 GDLLFYRITREDETKKV------------------IFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYI 152 (397)
T ss_dssp SCEEEEEEEECTTTCCE------------------EEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEE
T ss_pred CCEEEEEccCCcccccc------------------cceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEE
Confidence 99999999887621000 15667778 5899999999 99999 999999999999
Q ss_pred EEccC------CeEEE-----EEe------CCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCC-ceeeee-e---c--
Q 040361 268 HTLRE------GRYVR-----SLC------HPSGSALSKLAASRHGRIVLYGDDDLSLHLFSING-KHLASS-E---S-- 323 (413)
Q Consensus 268 wd~~~------~~~~~-----~~~------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~-~---~-- 323 (413)
||+++ ++.+. .+. ..+...+.+++|+|++ ++++++.|+.|++||++. +.+... . |
T Consensus 153 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~ 231 (397)
T 1sq9_A 153 WKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMIN 231 (397)
T ss_dssp EEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---C
T ss_pred EeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccc
Confidence 99988 65554 553 2335689999999999 999999999999999984 444443 3 5
Q ss_pred -CCceeEEEecCCCCEEEEeCCC---CeEEEEECCCCceEEEecC-------------CCCcEEEEEEccCCeEE-EEcC
Q 040361 324 -NGRLNCLELSACGQFLVCGGDQ---GQIVVRSMNSLEVVRRYSG-------------VGKIITSLAVTPEECFL-AGTK 385 (413)
Q Consensus 324 -~~~i~~~~~s~~~~~l~~~~~d---g~i~v~d~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~l-~~~~ 385 (413)
...+.+++|+|++++|++++.| |.|++||+.+++.+..+.. |...|.+++|+|++.++ +++.
T Consensus 232 ~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 311 (397)
T 1sq9_A 232 NSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW 311 (397)
T ss_dssp CCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEET
T ss_pred cCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeC
Confidence 8899999999999999999999 9999999999999999998 99999999999997655 6999
Q ss_pred CCeEEEEEecCCcccc
Q 040361 386 DGCLLVYSIENRRTSL 401 (413)
Q Consensus 386 dg~i~vw~~~~~~~~~ 401 (413)
||.|++||+.+++...
T Consensus 312 dg~i~iwd~~~~~~~~ 327 (397)
T 1sq9_A 312 DGKLRFWDVKTKERIT 327 (397)
T ss_dssp TSEEEEEETTTTEEEE
T ss_pred CCeEEEEEcCCCceeE
Confidence 9999999998876543
No 79
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2.3e-34 Score=262.20 Aligned_cols=285 Identities=16% Similarity=0.158 Sum_probs=215.8
Q ss_pred CCCC-CCceeeecCCCCccccCCCcCCCcccCCC--------CcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEc
Q 040361 93 QLQS-GGNFTFSGSQDPFFGVGADILSPRNVGSP--------LAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIAL 163 (413)
Q Consensus 93 ~~s~-~~~~l~~~~~d~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~ 163 (413)
.|+| +++++++++.|+.+++|+........... ......+...+.++.|+|++..++++++.||.|++||+
T Consensus 50 ~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~ 129 (408)
T 4a11_B 50 DIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDT 129 (408)
T ss_dssp EECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEET
T ss_pred EEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeC
Confidence 3577 77888888888888886432111100000 00011267789999999955544555666999999999
Q ss_pred CCCcEEEEeecCCCeEEEEEECCC---CCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecC
Q 040361 164 NDGRVVQSIRQHRDVVSCVAVTTD---GSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGH 240 (413)
Q Consensus 164 ~~~~~~~~~~~h~~~v~~~~~~~~---~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 240 (413)
.+++....+. +...+.++.|++. +.++++++.|+.|++||+.++. .+..+.+|
T Consensus 130 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~-----------------------~~~~~~~~ 185 (408)
T 4a11_B 130 NTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS-----------------------CSHILQGH 185 (408)
T ss_dssp TTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC-----------------------CCEEECCC
T ss_pred CCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc-----------------------eeeeecCC
Confidence 9999888887 7888999999984 4599999999999999998876 57778899
Q ss_pred CCCeEEEEEecCCC-EEEEeeCCCcEEEEEccCCe-EEEEEe--------------CCCCCceeeEEEccCCcEEEEECC
Q 040361 241 DDIITCLYVSVELD-IVISGSKDGTCVFHTLREGR-YVRSLC--------------HPSGSALSKLAASRHGRIVLYGDD 304 (413)
Q Consensus 241 ~~~i~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~-~~~~~~--------------~~~~~~v~~~~~~~~~~~l~~~~~ 304 (413)
...|.+++|+|+++ ++++++.||.|++||++++. .+..+. ..+...|.+++|+|+++++++++.
T Consensus 186 ~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 265 (408)
T 4a11_B 186 RQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGT 265 (408)
T ss_dssp CSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEET
T ss_pred CCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecC
Confidence 99999999999998 58999999999999998765 333331 223467999999999999999999
Q ss_pred CCeEEEEEeCCceeee-e------ecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEccC
Q 040361 305 DLSLHLFSINGKHLAS-S------ESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPE 377 (413)
Q Consensus 305 d~~i~i~d~~~~~~~~-~------~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~ 377 (413)
|+.|++||++...... . .....+........+..+++++.++.|++||+.+++.+..+.+|...|++++|+|+
T Consensus 266 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~ 345 (408)
T 4a11_B 266 DNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSN 345 (408)
T ss_dssp TSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETT
T ss_pred CCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCC
Confidence 9999999998433221 1 11122222233334556777778999999999999999999999999999999999
Q ss_pred CeEE-EEcCCCeEEEEEecCCcccc
Q 040361 378 ECFL-AGTKDGCLLVYSIENRRTSL 401 (413)
Q Consensus 378 ~~~l-~~~~dg~i~vw~~~~~~~~~ 401 (413)
+.++ +++.||.|++|++++++...
T Consensus 346 ~~~l~s~~~dg~i~iw~~~~~~~~~ 370 (408)
T 4a11_B 346 FQELYSGSRDCNILAWVPSLYEPVP 370 (408)
T ss_dssp TTEEEEEETTSCEEEEEECC-----
T ss_pred CCEEEEECCCCeEEEEeCCCCCccC
Confidence 7655 69999999999999886553
No 80
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=8e-34 Score=263.36 Aligned_cols=296 Identities=22% Similarity=0.219 Sum_probs=238.6
Q ss_pred CCeEEEEeecCCcEEEEecCceEEEEEee-------ccCCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecc
Q 040361 62 PSGIVYVGMLDSSIVLVNQGLTLSVKMWL-------TTQLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGS 134 (413)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (413)
+...++++..++.+.+|+........... ...++|++ .+++|+.|+.+++|+.... ........+..
T Consensus 131 ~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~-----~~~~~~~~h~~ 204 (464)
T 3v7d_B 131 EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKG-----CCTHVFEGHNS 204 (464)
T ss_dssp ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTT-----EEEEEECCCSS
T ss_pred CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCC-----cEEEEECCCCC
Confidence 34689999999999999977665554432 22478887 9999999999999753211 11112223567
Q ss_pred eeEEEEecC--CCCEEEEeecCCCeEEEEEcCCCc-----------------------EEEEeecCCCeEEEEEECCCCC
Q 040361 135 QCFTTMQTP--SENFLITCGNWENSFQVIALNDGR-----------------------VVQSIRQHRDVVSCVAVTTDGS 189 (413)
Q Consensus 135 ~~~~~~~~~--~~~~l~~~g~~d~~i~i~~~~~~~-----------------------~~~~~~~h~~~v~~~~~~~~~~ 189 (413)
.+.++.+.+ ++..+ ++|+.|+.|++||+.+++ ....+.+|...|.++ +++++
T Consensus 205 ~v~~l~~~~~~~~~~l-~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~ 281 (464)
T 3v7d_B 205 TVRCLDIVEYKNIKYI-VTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGN 281 (464)
T ss_dssp CEEEEEEEESSSCEEE-EEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETT
T ss_pred ccEEEEEecCCCCCEE-EEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCC
Confidence 777787774 44544 456669999999998765 255678899999887 46789
Q ss_pred EEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEE
Q 040361 190 ILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHT 269 (413)
Q Consensus 190 ~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd 269 (413)
+|++|+.||.|++||+.+++ ++..+.+|...|.+++|+|+++++++|+.||.|++||
T Consensus 282 ~l~~~~~d~~i~vwd~~~~~-----------------------~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd 338 (464)
T 3v7d_B 282 IVVSGSYDNTLIVWDVAQMK-----------------------CLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWD 338 (464)
T ss_dssp EEEEEETTSCEEEEETTTTE-----------------------EEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred EEEEEeCCCeEEEEECCCCc-----------------------EEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Confidence 99999999999999998876 6778889999999999999999999999999999999
Q ss_pred ccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCC-ceeeeeecCCceeEEEecCCCCEEEEeCCCCeE
Q 040361 270 LREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSING-KHLASSESNGRLNCLELSACGQFLVCGGDQGQI 348 (413)
Q Consensus 270 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i 348 (413)
+++++.+..+..+ ...|.+++++ +.++++++.||.|++||++. .......+...+..++|+++++++++|+ ||.|
T Consensus 339 ~~~~~~~~~~~~h-~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i 414 (464)
T 3v7d_B 339 LENGELMYTLQGH-TALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQF 414 (464)
T ss_dssp TTTTEEEEEECCC-SSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEE
T ss_pred CCCCcEEEEEeCC-CCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeE
Confidence 9999999999876 4589999987 58999999999999999984 4444456777888999999999999998 8999
Q ss_pred EEEECCCCceEEE-ecCCCCcEEEEEEccCCeEE-EEcCCCeEEEEEe
Q 040361 349 VVRSMNSLEVVRR-YSGVGKIITSLAVTPEECFL-AGTKDGCLLVYSI 394 (413)
Q Consensus 349 ~v~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l-~~~~dg~i~vw~~ 394 (413)
++||+.+++.+.. +..|...|.+++|+. +.++ +++.||.+.+|-+
T Consensus 415 ~iwd~~~g~~~~~~~~~~~~~v~~v~~~~-~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 415 NIYNLRSGKLVHANILKDADQIWSVNFKG-KTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp EEEETTTCCEEESCTTTTCSEEEEEEEET-TEEEEEEEETTEEEEEEE
T ss_pred EEEECCCCcEEehhhccCCCcEEEEEecC-CEEEEEEEeCCeEEEEEe
Confidence 9999999999886 567899999999984 4455 5777877666544
No 81
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.1e-35 Score=290.08 Aligned_cols=331 Identities=10% Similarity=0.064 Sum_probs=228.9
Q ss_pred EEecCCCCCCeEEEEeecCCcEEEEecCceEEEEEe------eccCCCCCCceeeecCCCCccccCCCcCCCcccCCCCc
Q 040361 54 IICSTRHQPSGIVYVGMLDSSIVLVNQGLTLSVKMW------LTTQLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLA 127 (413)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~ 127 (413)
+.+..+++++.+++++..++.+.+|+.......... ...+|+| |++|++++.|+.+++|+.... ...
T Consensus 20 V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~------~~~ 92 (902)
T 2oaj_A 20 PIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQ------KVL 92 (902)
T ss_dssp EEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTC------SEE
T ss_pred cEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCC------cEE
Confidence 566678889999999999999999987654333221 2346889 889999999999999753211 112
Q ss_pred ccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEE-----------EEeecCCCeEEEEEECCC-CCEEEEcc
Q 040361 128 ESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVV-----------QSIRQHRDVVSCVAVTTD-GSILATGS 195 (413)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~-----------~~~~~h~~~v~~~~~~~~-~~~l~s~s 195 (413)
..+.++..+.++.|+|+++++++ |+.||.|++||+.+++.. ..+.+|.+.|.+++|+|+ +..|++|+
T Consensus 93 ~~~~~~~~V~~v~~sp~g~~l~s-gs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~ 171 (902)
T 2oaj_A 93 TTVFVPGKITSIDTDASLDWMLI-GLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISY 171 (902)
T ss_dssp EEEECSSCEEEEECCTTCSEEEE-EETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEEC
T ss_pred EEEcCCCCEEEEEECCCCCEEEE-EcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEe
Confidence 23345678999999999998877 555999999999988764 223579999999999996 57899999
Q ss_pred CCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeE
Q 040361 196 YDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRY 275 (413)
Q Consensus 196 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 275 (413)
.||.| +||+++++...........+.+.... .......|...|++++|+|++++|++|+.||.|++||+++++.
T Consensus 172 ~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~-----~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~ 245 (902)
T 2oaj_A 172 EYVTL-TYSLVENEIKQSFIYELPPFAPGGDF-----SEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHM 245 (902)
T ss_dssp SSCEE-EEETTTTEEEEEECCCBCTTCCCSTT-----CCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCE
T ss_pred CCCcE-EEECCCCceEEEEecccCCcCCCccc-----ccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcE
Confidence 99999 99998776211000000000000000 0011223567899999999999999999999999999999887
Q ss_pred EEE--Ee---CC------------CCCceeeEEEcc----CC-cEEEEECCC-----CeEEEEE----------------
Q 040361 276 VRS--LC---HP------------SGSALSKLAASR----HG-RIVLYGDDD-----LSLHLFS---------------- 312 (413)
Q Consensus 276 ~~~--~~---~~------------~~~~v~~~~~~~----~~-~~l~~~~~d-----~~i~i~d---------------- 312 (413)
+.. +. .+ +...|.+++|++ ++ .++++|+.+ ..+.+|+
T Consensus 246 ~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~ 325 (902)
T 2oaj_A 246 IMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMK 325 (902)
T ss_dssp EEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHH
T ss_pred EEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhh
Confidence 654 21 11 123688888853 32 445555333 2454554
Q ss_pred -------------------------------------------------------eC-Cceeee--------eecCCcee
Q 040361 313 -------------------------------------------------------IN-GKHLAS--------SESNGRLN 328 (413)
Q Consensus 313 -------------------------------------------------------~~-~~~~~~--------~~~~~~i~ 328 (413)
+. +..... ..+...|+
T Consensus 326 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~ 405 (902)
T 2oaj_A 326 NYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLAT 405 (902)
T ss_dssp HHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEE
T ss_pred hhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCee
Confidence 32 100000 00112233
Q ss_pred ----------------------------------EEEecCCCCEEEEeCCCCeEEEEECCCCceE----EE--ec-----
Q 040361 329 ----------------------------------CLELSACGQFLVCGGDQGQIVVRSMNSLEVV----RR--YS----- 363 (413)
Q Consensus 329 ----------------------------------~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~----~~--~~----- 363 (413)
.++|+|++++|++|+.||+|++||+.++... .. +.
T Consensus 406 ~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~ 485 (902)
T 2oaj_A 406 TSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNK 485 (902)
T ss_dssp EEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTC
T ss_pred EEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCC
Confidence 3455789999999999999999999887431 11 11
Q ss_pred CCCCcEEEEEEccCCeEE-EEcCCCeEEEEEecCCc
Q 040361 364 GVGKIITSLAVTPEECFL-AGTKDGCLLVYSIENRR 398 (413)
Q Consensus 364 ~~~~~v~~~~~~~~~~~l-~~~~dg~i~vw~~~~~~ 398 (413)
+|...|.+++|+||+++| +|+.||+|++|++.+++
T Consensus 486 ~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~ 521 (902)
T 2oaj_A 486 AKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQ 521 (902)
T ss_dssp SSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECC
T ss_pred CCCCceeEEEecCCCCeEEEEecCcEEEEEEecCcc
Confidence 788999999999998766 59999999999998774
No 82
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.7e-34 Score=251.56 Aligned_cols=237 Identities=13% Similarity=0.072 Sum_probs=191.2
Q ss_pred cCCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCC--CCEEEEeecCCCeEEEEEcCCCc--
Q 040361 92 TQLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPS--ENFLITCGNWENSFQVIALNDGR-- 167 (413)
Q Consensus 92 ~~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~g~~d~~i~i~~~~~~~-- 167 (413)
.+|+|+|++|++|+.|+.+++|+..... .........|...+.++.|+++ ++.|++ |+.|++|++||+.+++
T Consensus 15 ~~~s~~g~~las~s~D~~v~iw~~~~~~---~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s-~s~D~~v~iWd~~~~~~~ 90 (297)
T 2pm7_B 15 AVMDYYGKRMATCSSDKTIKIFEVEGET---HKLIDTLTGHEGPVWRVDWAHPKFGTILAS-CSYDGKVMIWKEENGRWS 90 (297)
T ss_dssp EEECTTSSEEEEEETTSCEEEEEBCSSC---BCCCEEECCCSSCEEEEEECCGGGCSEEEE-EETTTEEEEEEBSSSCBC
T ss_pred EEECCCCCEEEEEeCCCEEEEEecCCCC---cEEEEEEccccCCeEEEEecCCCcCCEEEE-EcCCCEEEEEEcCCCceE
Confidence 4579999999999999999997532111 1222333456778899999875 555555 6669999999998874
Q ss_pred EEEEeecCCCeEEEEEECCC--CCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeE
Q 040361 168 VVQSIRQHRDVVSCVAVTTD--GSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIIT 245 (413)
Q Consensus 168 ~~~~~~~h~~~v~~~~~~~~--~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 245 (413)
.+..+.+|...|.+++|+|+ +.+|++|+.|+.|++||+.+.... ....+.+|...|.
T Consensus 91 ~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~---------------------~~~~~~~h~~~v~ 149 (297)
T 2pm7_B 91 QIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTT---------------------SPIIIDAHAIGVN 149 (297)
T ss_dssp CCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCB---------------------CCEEEECCSSCEE
T ss_pred EEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCce---------------------eeeeeecccCccc
Confidence 56677889999999999997 899999999999999999765310 1345778999999
Q ss_pred EEEEecC-------------CCEEEEeeCCCcEEEEEccCCe----EEEEEeCCCCCceeeEEEccCC---cEEEEECCC
Q 040361 246 CLYVSVE-------------LDIVISGSKDGTCVFHTLREGR----YVRSLCHPSGSALSKLAASRHG---RIVLYGDDD 305 (413)
Q Consensus 246 ~~~~~~~-------------~~~l~s~~~dg~i~vwd~~~~~----~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~d 305 (413)
+++|+|+ +++|++|+.|+.|++||+++++ ....+..| ...|.+++|+|++ .+|++++.|
T Consensus 150 ~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H-~~~V~~v~~sp~~~~~~~las~s~D 228 (297)
T 2pm7_B 150 SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH-SDWVRDVAWSPTVLLRSYMASVSQD 228 (297)
T ss_dssp EEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC-SSCEEEEEECCCCSSSEEEEEEETT
T ss_pred eEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCC-CCceEEEEECCCCCCceEEEEEECC
Confidence 9999996 4699999999999999998765 45566655 5689999999984 899999999
Q ss_pred CeEEEEEeCCce----eee---eecCCceeEEEecCCCCEEEEeCCCCeEEEEECC
Q 040361 306 LSLHLFSINGKH----LAS---SESNGRLNCLELSACGQFLVCGGDQGQIVVRSMN 354 (413)
Q Consensus 306 ~~i~i~d~~~~~----~~~---~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~ 354 (413)
++|++||++... ... ..+...+.+++|+|+|++|++++.||.|++|+..
T Consensus 229 ~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 229 RTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp SCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred CcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 999999997421 111 2467889999999999999999999999999976
No 83
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=2.4e-34 Score=261.74 Aligned_cols=245 Identities=18% Similarity=0.234 Sum_probs=202.2
Q ss_pred EEecCCCCEEEEeecCCCeEEEEEcCCC----cEEEEeecCCCeEEEEEECC-CCCEEEEccCCCcEEEEEecccccccc
Q 040361 139 TMQTPSENFLITCGNWENSFQVIALNDG----RVVQSIRQHRDVVSCVAVTT-DGSILATGSYDTTVMVWEVIRARAPEK 213 (413)
Q Consensus 139 ~~~~~~~~~l~~~g~~d~~i~i~~~~~~----~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~dg~i~iw~~~~~~~~~~ 213 (413)
+.++|+...++++++.||.|+||++... +....+.+|.+.|++++|+| ++++|++|+.||.|++||+.++.....
T Consensus 40 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~ 119 (402)
T 2aq5_A 40 CAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLP 119 (402)
T ss_dssp EEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSC
T ss_pred EEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccc
Confidence 5567777777777778999999999654 23456778999999999999 999999999999999999987742110
Q ss_pred ccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCC-CEEEEeeCCCcEEEEEccCCeEEEEEe-CCCCCceeeEE
Q 040361 214 RVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVEL-DIVISGSKDGTCVFHTLREGRYVRSLC-HPSGSALSKLA 291 (413)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~~v~~~~ 291 (413)
...++..+.+|...|.+++|+|++ ++|++++.||.|++||+++++.+..+. ..+...|.+++
T Consensus 120 ----------------~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 183 (402)
T 2aq5_A 120 ----------------LREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVD 183 (402)
T ss_dssp ----------------BCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEE
T ss_pred ----------------cCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEE
Confidence 002567888999999999999998 699999999999999999999998883 33356899999
Q ss_pred EccCCcEEEEECCCCeEEEEEeCC-ceeeee--ecCCc-eeEEEecCCCCEEEEe---CCCCeEEEEECCCCce-EEEec
Q 040361 292 ASRHGRIVLYGDDDLSLHLFSING-KHLASS--ESNGR-LNCLELSACGQFLVCG---GDQGQIVVRSMNSLEV-VRRYS 363 (413)
Q Consensus 292 ~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~--~~~~~-i~~~~~s~~~~~l~~~---~~dg~i~v~d~~~~~~-~~~~~ 363 (413)
|+|++.+|++++.|+.|++||++. ..+... .+.+. +.+++|+|++++|++| +.|+.|++||+++++. +....
T Consensus 184 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~ 263 (402)
T 2aq5_A 184 WSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQE 263 (402)
T ss_dssp ECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEE
T ss_pred ECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEe
Confidence 999999999999999999999984 444333 45444 8999999999999999 8999999999998664 33332
Q ss_pred -CCCCcEEEEEEccCCeEE--EEcCCCeEEEEEecCCcc
Q 040361 364 -GVGKIITSLAVTPEECFL--AGTKDGCLLVYSIENRRT 399 (413)
Q Consensus 364 -~~~~~v~~~~~~~~~~~l--~~~~dg~i~vw~~~~~~~ 399 (413)
.|...+.+++|+|++.++ +|+.||.|++|++.+++.
T Consensus 264 ~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~ 302 (402)
T 2aq5_A 264 LDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP 302 (402)
T ss_dssp CCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTT
T ss_pred ccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc
Confidence 467789999999997654 366899999999998874
No 84
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=3.9e-34 Score=295.99 Aligned_cols=276 Identities=17% Similarity=0.256 Sum_probs=238.3
Q ss_pred cCCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEE
Q 040361 92 TQLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQS 171 (413)
Q Consensus 92 ~~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~ 171 (413)
.+|+|+|+++++|+.|+.+++|+.... ........+...+.++.|+|+++++++++ .|+.|++||+.+++.+..
T Consensus 621 ~~~s~~~~~l~s~~~d~~i~vw~~~~~-----~~~~~~~~h~~~v~~~~~s~~~~~l~s~~-~d~~v~vwd~~~~~~~~~ 694 (1249)
T 3sfz_A 621 ACFSQDGQRIASCGADKTLQVFKAETG-----EKLLDIKAHEDEVLCCAFSSDDSYIATCS-ADKKVKIWDSATGKLVHT 694 (1249)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTC-----CEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTCCEEEE
T ss_pred EEECCCCCEEEEEeCCCeEEEEECCCC-----CEEEEeccCCCCEEEEEEecCCCEEEEEe-CCCeEEEEECCCCceEEE
Confidence 357999999999999999999753221 11122224577899999999999888755 499999999999999999
Q ss_pred eecCCCeEEEEEECC--CCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEE
Q 040361 172 IRQHRDVVSCVAVTT--DGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYV 249 (413)
Q Consensus 172 ~~~h~~~v~~~~~~~--~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~ 249 (413)
+.+|...|.+++|+| ++.++++|+.|+.|++||+.++. ....+.+|.+.|++++|
T Consensus 695 ~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~-----------------------~~~~~~~h~~~v~~~~~ 751 (1249)
T 3sfz_A 695 YDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE-----------------------CRNTMFGHTNSVNHCRF 751 (1249)
T ss_dssp EECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSS-----------------------EEEEECCCSSCEEEEEE
T ss_pred EcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcc-----------------------hhheecCCCCCEEEEEE
Confidence 999999999999999 56689999999999999998887 67788899999999999
Q ss_pred ecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCC------------CCceeeEEEccCCcEEEEECCCCeEEEEEeCCc-
Q 040361 250 SVELDIVISGSKDGTCVFHTLREGRYVRSLCHPS------------GSALSKLAASRHGRIVLYGDDDLSLHLFSINGK- 316 (413)
Q Consensus 250 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~- 316 (413)
+|+++++++++.||.|++||+++++....+.... ...+.+++|+|++..+++++ ++.+.+||+...
T Consensus 752 sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~ 830 (1249)
T 3sfz_A 752 SPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSG 830 (1249)
T ss_dssp CSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCC
T ss_pred ecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCC
Confidence 9999999999999999999999998877765321 23688899999999999887 689999999843
Q ss_pred eeee--eecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEccCCe-EEEEcCCCeEEEEE
Q 040361 317 HLAS--SESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEEC-FLAGTKDGCLLVYS 393 (413)
Q Consensus 317 ~~~~--~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~dg~i~vw~ 393 (413)
.... ..+...+.+++|+|+++++++++.||.|++||+.++..+..+.+|...|.+++|+|++. +++++.||.|++|+
T Consensus 831 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~ 910 (1249)
T 3sfz_A 831 LLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE 910 (1249)
T ss_dssp EEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 3333 26788999999999999999999999999999999999999999999999999999985 55799999999999
Q ss_pred ecCC
Q 040361 394 IENR 397 (413)
Q Consensus 394 ~~~~ 397 (413)
+.+.
T Consensus 911 ~~~~ 914 (1249)
T 3sfz_A 911 TKKV 914 (1249)
T ss_dssp HHHH
T ss_pred cccc
Confidence 8754
No 85
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1e-34 Score=258.33 Aligned_cols=242 Identities=13% Similarity=0.178 Sum_probs=206.9
Q ss_pred eecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCc---EEEEeecCCCeEEEEEECCCCC-EEEEccCCCcEEEEEe-
Q 040361 131 ELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGR---VVQSIRQHRDVVSCVAVTTDGS-ILATGSYDTTVMVWEV- 205 (413)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~---~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~dg~i~iw~~- 205 (413)
.|...+.++.|+|+++.+++++ .|+.|++|++.+++ ....+.+|...|.+++|+|+++ +|++|+.||.|++||+
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~ 87 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSLLLITS-WDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLI 87 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEE-TTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSS
T ss_pred CCCCcEEEEEEcCCCCEEEEEc-CCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEec
Confidence 3467789999999999887755 59999999998877 3455568999999999999999 9999999999999999
Q ss_pred ccccccccccccceeecCCCceeeecCceeeeec--CCCCeEEEEEecCCCEEEEeeCCCcEEEEEccC---------Ce
Q 040361 206 IRARAPEKRVRNMQIEAPRKDYVIVETPFHILCG--HDDIITCLYVSVELDIVISGSKDGTCVFHTLRE---------GR 274 (413)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~---------~~ 274 (413)
.++. ...+.+ |...|.+++|+| ++++++++.|+.|++||+++ ++
T Consensus 88 ~~~~------------------------~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 142 (342)
T 1yfq_A 88 GSPS------------------------FQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNL 142 (342)
T ss_dssp SSSS------------------------EEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEES
T ss_pred cCCc------------------------eEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCC
Confidence 7765 456677 999999999999 99999999999999999987 66
Q ss_pred EEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCC-ce----eeeeecCCceeEEEecC-CCCEEEEeCCCCeE
Q 040361 275 YVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSING-KH----LASSESNGRLNCLELSA-CGQFLVCGGDQGQI 348 (413)
Q Consensus 275 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~----~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i 348 (413)
.+..+. +...+.+++|++++ +++++.|+.|++||++. .. .....+...+.+++|+| +++++++++.||.|
T Consensus 143 ~~~~~~--~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i 218 (342)
T 1yfq_A 143 NSNNTK--VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRV 218 (342)
T ss_dssp CSSSSS--SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEE
T ss_pred eeeEEe--eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcE
Confidence 555555 34689999999887 89999999999999986 22 23345778999999999 99999999999999
Q ss_pred EEEECCCC------ceEEEecCCCC---------cEEEEEEccCCeEE-EEcCCCeEEEEEecCCccccc
Q 040361 349 VVRSMNSL------EVVRRYSGVGK---------IITSLAVTPEECFL-AGTKDGCLLVYSIENRRTSLP 402 (413)
Q Consensus 349 ~v~d~~~~------~~~~~~~~~~~---------~v~~~~~~~~~~~l-~~~~dg~i~vw~~~~~~~~~~ 402 (413)
++|++... +....+..|.. .|.+++|+|++.++ +++.||.|++||+.+++....
T Consensus 219 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 288 (342)
T 1yfq_A 219 AVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKN 288 (342)
T ss_dssp EEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEE
T ss_pred EEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhh
Confidence 99999886 77788887765 99999999997644 699999999999998865433
No 86
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=2.2e-34 Score=265.75 Aligned_cols=269 Identities=11% Similarity=0.164 Sum_probs=203.3
Q ss_pred cceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCc-----------EEEEeecCC------------CeEEEEEEC
Q 040361 129 SFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGR-----------VVQSIRQHR------------DVVSCVAVT 185 (413)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~-----------~~~~~~~h~------------~~v~~~~~~ 185 (413)
.+.+...+.++.|+|++++|+++ +.||.|+||++.+++ ....+.+|. +.|.+++|+
T Consensus 24 ~~~~~~~V~~v~~s~~g~~la~g-~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~ 102 (447)
T 3dw8_B 24 DVAEADIISTVEFNHSGELLATG-DKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL 102 (447)
T ss_dssp CCCGGGSEEEEEECSSSSEEEEE-ETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEEC
T ss_pred cccccCcEEEEEECCCCCEEEEE-cCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEc
Confidence 34557889999999999988774 459999999998877 578889998 889999999
Q ss_pred CCC--CEEEEccCCCcEEEEEeccccccccccc---------------cceee-cCCCceeeecCceee-eecCCCCeEE
Q 040361 186 TDG--SILATGSYDTTVMVWEVIRARAPEKRVR---------------NMQIE-APRKDYVIVETPFHI-LCGHDDIITC 246 (413)
Q Consensus 186 ~~~--~~l~s~s~dg~i~iw~~~~~~~~~~~~~---------------~~~~~-~~~~~~~~~~~~~~~-~~~h~~~i~~ 246 (413)
|++ .+|++++.|+.|++||+.++........ ..... ...........+... ..+|...|.+
T Consensus 103 ~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 182 (447)
T 3dw8_B 103 PQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINS 182 (447)
T ss_dssp CCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCE
T ss_pred CCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEE
Confidence 998 8999999999999999987542110000 00000 000001111112223 3689999999
Q ss_pred EEEecCCCEEEEeeCCCcEEEEEccC-CeEEEEE------eCCCCCceeeEEEccCC-cEEEEECCCCeEEEEEeCCce-
Q 040361 247 LYVSVELDIVISGSKDGTCVFHTLRE-GRYVRSL------CHPSGSALSKLAASRHG-RIVLYGDDDLSLHLFSINGKH- 317 (413)
Q Consensus 247 ~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~------~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~- 317 (413)
++|+|++++|++| .|+.|++||+++ ++.+..+ ...+...|.+++|+|++ .++++++.|+.|++||++...
T Consensus 183 ~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~ 261 (447)
T 3dw8_B 183 ISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASAL 261 (447)
T ss_dssp EEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSS
T ss_pred EEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcc
Confidence 9999999999998 799999999984 4444432 11235689999999998 999999999999999998433
Q ss_pred ----eeee-ecCC------------ceeEEEecCCCCEEEEeCCCCeEEEEECCC-CceEEEecCCCCc-----------
Q 040361 318 ----LASS-ESNG------------RLNCLELSACGQFLVCGGDQGQIVVRSMNS-LEVVRRYSGVGKI----------- 368 (413)
Q Consensus 318 ----~~~~-~~~~------------~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~----------- 368 (413)
.... .+.. .|.+++|+|+|++|++++. +.|++||+++ ++.+..+.+|...
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 340 (447)
T 3dw8_B 262 CDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYEND 340 (447)
T ss_dssp SCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTS
T ss_pred ccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccccc
Confidence 2332 3333 8999999999999999999 9999999997 8888888887532
Q ss_pred ----EEEEEEccCCeEE-EEcCCCeEEEEEecCCccc
Q 040361 369 ----ITSLAVTPEECFL-AGTKDGCLLVYSIENRRTS 400 (413)
Q Consensus 369 ----v~~~~~~~~~~~l-~~~~dg~i~vw~~~~~~~~ 400 (413)
+..++|+|++.++ +|+.||.|++||+.+++..
T Consensus 341 ~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~ 377 (447)
T 3dw8_B 341 CIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI 377 (447)
T ss_dssp GGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE
T ss_pred ccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce
Confidence 3348999998655 6999999999999987643
No 87
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=7.3e-34 Score=281.77 Aligned_cols=246 Identities=14% Similarity=0.159 Sum_probs=218.9
Q ss_pred ceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEecccc
Q 040361 130 FELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRAR 209 (413)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~ 209 (413)
..|...+.+++|+|++..+++++ .||.|+|||+.+++.+..+.+|...|.+++|+|++++|++|+.||.|++||+.+++
T Consensus 10 ~~h~~~v~~i~~sp~~~~la~~~-~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~ 88 (814)
T 3mkq_A 10 SNRSDRVKGIDFHPTEPWVLTTL-YSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE 88 (814)
T ss_dssp EEECSCEEEEEECSSSSEEEEEE-TTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC
T ss_pred ecCCCceEEEEECCCCCEEEEEe-CCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Confidence 34577899999999999888755 59999999999999999999999999999999999999999999999999998887
Q ss_pred ccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCC-eEEEEEeCCCCCcee
Q 040361 210 APEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREG-RYVRSLCHPSGSALS 288 (413)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~~v~ 288 (413)
.+..+.+|.+.|++++|+|+++++++++.||.|++||+.++ .....+..+ ...+.
T Consensus 89 -----------------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~-~~~v~ 144 (814)
T 3mkq_A 89 -----------------------KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGH-EHFVM 144 (814)
T ss_dssp -----------------------EEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECC-SSCEE
T ss_pred -----------------------EEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCC-CCcEE
Confidence 67788899999999999999999999999999999999987 555666654 56899
Q ss_pred eEEEcc-CCcEEEEECCCCeEEEEEeCCc-eeee--eecCCceeEEEecC--CCCEEEEeCCCCeEEEEECCCCceEEEe
Q 040361 289 KLAASR-HGRIVLYGDDDLSLHLFSINGK-HLAS--SESNGRLNCLELSA--CGQFLVCGGDQGQIVVRSMNSLEVVRRY 362 (413)
Q Consensus 289 ~~~~~~-~~~~l~~~~~d~~i~i~d~~~~-~~~~--~~~~~~i~~~~~s~--~~~~l~~~~~dg~i~v~d~~~~~~~~~~ 362 (413)
+++|+| ++..+++++.|+.|++||++.. .... ..+...+.+++|+| ++.++++++.||.|++||+.+++.+..+
T Consensus 145 ~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~ 224 (814)
T 3mkq_A 145 CVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL 224 (814)
T ss_dssp EEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEE
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEE
Confidence 999999 8899999999999999999733 2222 23448899999999 9999999999999999999999999999
Q ss_pred cCCCCcEEEEEEccCCeEE-EEcCCCeEEEEEecCCccc
Q 040361 363 SGVGKIITSLAVTPEECFL-AGTKDGCLLVYSIENRRTS 400 (413)
Q Consensus 363 ~~~~~~v~~~~~~~~~~~l-~~~~dg~i~vw~~~~~~~~ 400 (413)
.+|...|.+++|+|++.++ +++.||.|++||+.+++..
T Consensus 225 ~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~ 263 (814)
T 3mkq_A 225 EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVE 263 (814)
T ss_dssp ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEE
T ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence 9999999999999998655 6999999999999886544
No 88
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.3e-34 Score=257.66 Aligned_cols=269 Identities=12% Similarity=0.067 Sum_probs=215.9
Q ss_pred CCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCC-EEEEeecCCCeEEEEEc-CCCcEEE
Q 040361 93 QLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSEN-FLITCGNWENSFQVIAL-NDGRVVQ 170 (413)
Q Consensus 93 ~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~g~~d~~i~i~~~-~~~~~~~ 170 (413)
.|+|+++++++++.|+.+++|+...... .........+...+.++.|+|+++ .+++ |+.||.|++||+ .+++. .
T Consensus 18 ~~s~~~~~l~~~~~d~~v~iw~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~dg~i~~wd~~~~~~~-~ 93 (342)
T 1yfq_A 18 KIIPSKSLLLITSWDGSLTVYKFDIQAK--NVDLLQSLRYKHPLLCCNFIDNTDLQIYV-GTVQGEILKVDLIGSPSF-Q 93 (342)
T ss_dssp EEEGGGTEEEEEETTSEEEEEEEETTTT--EEEEEEEEECSSCEEEEEEEESSSEEEEE-EETTSCEEEECSSSSSSE-E
T ss_pred EEcCCCCEEEEEcCCCeEEEEEeCCCCc--cccceeeeecCCceEEEEECCCCCcEEEE-EcCCCeEEEEEeccCCce-E
Confidence 4577888888888999988865322110 011223345677899999999998 6666 556999999999 77765 7
Q ss_pred Eeec--CCCeEEEEEECCCCCEEEEccCCCcEEEEEecc---------ccccccccccceeecCCCceeeecCceeeeec
Q 040361 171 SIRQ--HRDVVSCVAVTTDGSILATGSYDTTVMVWEVIR---------ARAPEKRVRNMQIEAPRKDYVIVETPFHILCG 239 (413)
Q Consensus 171 ~~~~--h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (413)
.+.+ |...|.+++|+| +++|++++.|+.|++||+.+ .+ ++..+.
T Consensus 94 ~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-----------------------~~~~~~- 148 (342)
T 1yfq_A 94 ALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNL-----------------------NSNNTK- 148 (342)
T ss_dssp ECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEES-----------------------CSSSSS-
T ss_pred eccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCC-----------------------eeeEEe-
Confidence 7888 999999999999 99999999999999999987 43 344444
Q ss_pred CCCCeEEEEEecCCCEEEEeeCCCcEEEEEccC-CeE-EEEEeCCCCCceeeEEEcc-CCcEEEEECCCCeEEEEEeCCc
Q 040361 240 HDDIITCLYVSVELDIVISGSKDGTCVFHTLRE-GRY-VRSLCHPSGSALSKLAASR-HGRIVLYGDDDLSLHLFSINGK 316 (413)
Q Consensus 240 h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~-~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~ 316 (413)
|...|.+++|++++ +++++.|+.|++||+++ +.. .......+...+.+++|+| +++++++++.||.+++|+++..
T Consensus 149 ~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~ 226 (342)
T 1yfq_A 149 VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQ 226 (342)
T ss_dssp SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTT
T ss_pred eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCC
Confidence 88999999999886 99999999999999988 543 2333334456899999999 9999999999999999999743
Q ss_pred -------eeee-eec---------CCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCC-CCcEEEEEEccCC
Q 040361 317 -------HLAS-SES---------NGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGV-GKIITSLAVTPEE 378 (413)
Q Consensus 317 -------~~~~-~~~---------~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-~~~v~~~~~~~~~ 378 (413)
.... ..+ ...|.+++|+|++++|++|+.||.|++||+.+++.+..+.+| ...|.+++ |++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~ 304 (342)
T 1yfq_A 227 GDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSD 304 (342)
T ss_dssp CCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECS
T ss_pred CcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCC
Confidence 2222 233 338999999999999999999999999999999999999998 99999999 887
Q ss_pred eEE-EEcCCCe-EEEEEe
Q 040361 379 CFL-AGTKDGC-LLVYSI 394 (413)
Q Consensus 379 ~~l-~~~~dg~-i~vw~~ 394 (413)
.++ +++.||. .+.|..
T Consensus 305 ~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 305 NILCLATSDDTFKTNAAI 322 (342)
T ss_dssp SEEEEEEECTHHHHCSSS
T ss_pred CeEEEEecCCcccccccc
Confidence 655 6999998 555553
No 89
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=5.5e-34 Score=262.07 Aligned_cols=269 Identities=19% Similarity=0.274 Sum_probs=214.7
Q ss_pred CCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeec
Q 040361 95 QSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQ 174 (413)
Q Consensus 95 s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~ 174 (413)
+++++++++|+.|+.+++|+.... ........+...+.++.+ +++.+++ |+.||.|++||+.+++.+..+.+
T Consensus 140 ~~d~~~l~~g~~dg~i~iwd~~~~-----~~~~~~~~h~~~v~~l~~--~~~~l~s-g~~dg~i~vwd~~~~~~~~~~~~ 211 (435)
T 1p22_A 140 QYDDQKIVSGLRDNTIKIWDKNTL-----ECKRILTGHTGSVLCLQY--DERVIIT-GSSDSTVRVWDVNTGEMLNTLIH 211 (435)
T ss_dssp ECCSSEEEEEESSSCEEEEESSSC-----CEEEEECCCSSCEEEEEC--CSSEEEE-EETTSCEEEEESSSCCEEEEECC
T ss_pred EECCCEEEEEeCCCeEEEEeCCCC-----eEEEEEcCCCCcEEEEEE--CCCEEEE-EcCCCeEEEEECCCCcEEEEEcC
Confidence 347889999999999999753211 111122234566777766 5665555 66699999999999999999999
Q ss_pred CCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCC
Q 040361 175 HRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELD 254 (413)
Q Consensus 175 h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~ 254 (413)
|...|.+++|++ .+|++|+.||.|++||+.++... .....+.+|...|.+++| +++
T Consensus 212 h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~--------------------~~~~~~~~~~~~v~~~~~--~~~ 267 (435)
T 1p22_A 212 HCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDI--------------------TLRRVLVGHRAAVNVVDF--DDK 267 (435)
T ss_dssp CCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCC--------------------EEEEEECCCSSCEEEEEE--ETT
T ss_pred CCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCc--------------------eeeeEecCCCCcEEEEEe--CCC
Confidence 999999999974 59999999999999999876511 023567889999999999 678
Q ss_pred EEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeC-Cceeee-eecCCceeEEEe
Q 040361 255 IVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSIN-GKHLAS-SESNGRLNCLEL 332 (413)
Q Consensus 255 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~-~~~~~~i~~~~~ 332 (413)
++++|+.||.|++||+++++.+..+..+ ...+.++.+ ++.++++++.|+.|++||++ +..+.. ..|...+.+++|
T Consensus 268 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~ 344 (435)
T 1p22_A 268 YIVSASGDRTIKVWNTSTCEFVRTLNGH-KRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF 344 (435)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECC-SSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC
T ss_pred EEEEEeCCCeEEEEECCcCcEEEEEcCC-CCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe
Confidence 9999999999999999999999999876 457888888 46899999999999999998 444444 358889999999
Q ss_pred cCCCCEEEEeCCCCeEEEEECCCCc---------eEEEecCCCCcEEEEEEccCCeEEEEcCCCeEEEEEecCCcccc
Q 040361 333 SACGQFLVCGGDQGQIVVRSMNSLE---------VVRRYSGVGKIITSLAVTPEECFLAGTKDGCLLVYSIENRRTSL 401 (413)
Q Consensus 333 s~~~~~l~~~~~dg~i~v~d~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~l~~~~dg~i~vw~~~~~~~~~ 401 (413)
++++|++|+.||.|++||+.+++ .+..+.+|.+.|.+++|. ...+++++.||.|++||+.+.....
T Consensus 345 --~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~s~Dg~i~iwd~~~~~~~~ 419 (435)
T 1p22_A 345 --DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD-EFQIVSSSHDDTILIWDFLNDPAAQ 419 (435)
T ss_dssp --CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC-SSCEEECCSSSEEEEEC--------
T ss_pred --cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEeC-CCEEEEEeCCCEEEEEECCCCCCcc
Confidence 78999999999999999998766 788899999999999993 3456689999999999998865443
No 90
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-33 Score=252.85 Aligned_cols=244 Identities=12% Similarity=0.173 Sum_probs=209.9
Q ss_pred eecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccc
Q 040361 131 ELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARA 210 (413)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~ 210 (413)
.|...+.+++|+|+++++++++ .||.|++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||+.+++
T Consensus 30 ~h~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~- 107 (369)
T 3zwl_B 30 GHERPLTQVKYNKEGDLLFSCS-KDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQ- 107 (369)
T ss_dssp CCSSCEEEEEECTTSCEEEEEE-SSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC-
T ss_pred EeeceEEEEEEcCCCCEEEEEe-CCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-
Confidence 3567789999999998887755 59999999999999999999999999999999999999999999999999998876
Q ss_pred cccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCC-----CcEEEEEccCCeE----------
Q 040361 211 PEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKD-----GTCVFHTLREGRY---------- 275 (413)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~~---------- 275 (413)
.+..+. |...|.+++|+|+++++++++.+ +.|.+||+.....
T Consensus 108 ----------------------~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~ 164 (369)
T 3zwl_B 108 ----------------------CVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEE 164 (369)
T ss_dssp ----------------------EEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSS
T ss_pred ----------------------EEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccc
Confidence 455555 88999999999999999999999 9999999976532
Q ss_pred -EEEEeCCC-CCceeeEEEccCCcEEEEECCCCeEEEEEeCC-ce-eee-eecCCceeEEEecCCCCEEEEeCCCCeEEE
Q 040361 276 -VRSLCHPS-GSALSKLAASRHGRIVLYGDDDLSLHLFSING-KH-LAS-SESNGRLNCLELSACGQFLVCGGDQGQIVV 350 (413)
Q Consensus 276 -~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~-~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v 350 (413)
...+..+. ...+.+++|+|+++++++++.|+.|++||++. .. +.. ..+...+.+++|+|++++|++++.||.|++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v 244 (369)
T 3zwl_B 165 PIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFL 244 (369)
T ss_dssp CSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred eeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEE
Confidence 22222221 12799999999999999999999999999985 33 333 357889999999999999999999999999
Q ss_pred EECCCCceEEEecCCCCcEEEEEEccCCeEE-EEcCCC--------------eEEEEEecCCccc
Q 040361 351 RSMNSLEVVRRYSGVGKIITSLAVTPEECFL-AGTKDG--------------CLLVYSIENRRTS 400 (413)
Q Consensus 351 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~dg--------------~i~vw~~~~~~~~ 400 (413)
||+.+++.+..+. +...+.+++|+|++.++ +++.++ .+++||+.+++..
T Consensus 245 ~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 308 (369)
T 3zwl_B 245 VDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEI 308 (369)
T ss_dssp EETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEE
T ss_pred EECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcch
Confidence 9999999998887 77889999999998766 577777 8999999887654
No 91
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=4.8e-34 Score=256.32 Aligned_cols=244 Identities=16% Similarity=0.180 Sum_probs=196.8
Q ss_pred ceecceeEEEEecCCC--CEEEEeecCCCeEEEEEcCC-CcEE-EEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEe
Q 040361 130 FELGSQCFTTMQTPSE--NFLITCGNWENSFQVIALND-GRVV-QSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEV 205 (413)
Q Consensus 130 ~~~~~~~~~~~~~~~~--~~l~~~g~~d~~i~i~~~~~-~~~~-~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~ 205 (413)
..|...+.++.|+|++ ..++++|+.||.|++||+.+ ++.+ ..+.+|...|.+++|+|++++|++++.||.|++||+
T Consensus 36 ~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~ 115 (368)
T 3mmy_A 36 SSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDL 115 (368)
T ss_dssp SCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred cCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEc
Confidence 3457889999999995 44445566699999999987 5555 788899999999999999999999999999999999
Q ss_pred ccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEE--ecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCC
Q 040361 206 IRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYV--SVELDIVISGSKDGTCVFHTLREGRYVRSLCHPS 283 (413)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~--~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 283 (413)
.+++ ...+.+|...|.+++| +++++++++++.||.|++||+++++.+..+..+.
T Consensus 116 ~~~~------------------------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 171 (368)
T 3mmy_A 116 SSNQ------------------------AIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE 171 (368)
T ss_dssp TTTE------------------------EEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS
T ss_pred CCCC------------------------ceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC
Confidence 8776 3346779999999999 8899999999999999999999887766655332
Q ss_pred ----------------------------------------CCceeeEEEccCCcE----EEEECCCCeEEEEEeCCc---
Q 040361 284 ----------------------------------------GSALSKLAASRHGRI----VLYGDDDLSLHLFSINGK--- 316 (413)
Q Consensus 284 ----------------------------------------~~~v~~~~~~~~~~~----l~~~~~d~~i~i~d~~~~--- 316 (413)
......+.+.++... +++++.|+.|++||++..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~ 251 (368)
T 3mmy_A 172 RCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPA 251 (368)
T ss_dssp CEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHH
T ss_pred CceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCcc
Confidence 122334444443332 899999999999999843
Q ss_pred -eeee-eecCC------------ceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEccCCeEE-
Q 040361 317 -HLAS-SESNG------------RLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFL- 381 (413)
Q Consensus 317 -~~~~-~~~~~------------~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l- 381 (413)
.... ..+.. .+.+++|+|++++|++|+.||.|++||+.+++.+..+..|...|.+++|+|++.++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 331 (368)
T 3mmy_A 252 KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFA 331 (368)
T ss_dssp HHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEE
T ss_pred ccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEE
Confidence 1222 22222 69999999999999999999999999999999999999999999999999998655
Q ss_pred EEcCCCeEEEEEecCC
Q 040361 382 AGTKDGCLLVYSIENR 397 (413)
Q Consensus 382 ~~~~dg~i~vw~~~~~ 397 (413)
+++.|+..+.|++.+.
T Consensus 332 ~~s~d~~~~~~~~~~~ 347 (368)
T 3mmy_A 332 YASSYDWSKGHEFYNP 347 (368)
T ss_dssp EEECCCSTTCGGGCCT
T ss_pred EEecccccccccccCC
Confidence 5888876665555443
No 92
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.5e-34 Score=259.61 Aligned_cols=243 Identities=16% Similarity=0.196 Sum_probs=207.7
Q ss_pred ecceeEEEEecCC----CCEEEEeecCCCeEEEEEcCCCcEEEEeec-----CCCeEEEEEECCC----CCEEEEccCCC
Q 040361 132 LGSQCFTTMQTPS----ENFLITCGNWENSFQVIALNDGRVVQSIRQ-----HRDVVSCVAVTTD----GSILATGSYDT 198 (413)
Q Consensus 132 ~~~~~~~~~~~~~----~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~-----h~~~v~~~~~~~~----~~~l~s~s~dg 198 (413)
|...+.++.|+|+ ...+++++. ++.|++||+.+++.+..+.. |...|.+++|+|+ +++|++|+.||
T Consensus 17 h~~~v~~i~~~p~~~~~~~~~~~~~~-~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg 95 (366)
T 3k26_A 17 HNQPLFGVQFNWHSKEGDPLVFATVG-SNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRG 95 (366)
T ss_dssp TCSCEEEEEECTTCCTTSCEEEEEEE-TTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTC
T ss_pred CCCceEEEEEecccCCCCceEEEECC-CCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCC
Confidence 4678899999984 444555444 88999999998887777654 5578999999998 67999999999
Q ss_pred cEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEec-CCCEEEEeeCCCcEEEEEccCCeEEE
Q 040361 199 TVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSV-ELDIVISGSKDGTCVFHTLREGRYVR 277 (413)
Q Consensus 199 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~ 277 (413)
.|++||+.+++ .+..+.+|...|.+++|+| ++++|++++.||.|++||+++++.+.
T Consensus 96 ~i~v~d~~~~~-----------------------~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 152 (366)
T 3k26_A 96 IIRIINPITMQ-----------------------CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVA 152 (366)
T ss_dssp EEEEECTTTCC-----------------------EEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEE
T ss_pred EEEEEEchhce-----------------------EeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEE
Confidence 99999998876 6778889999999999999 89999999999999999999999988
Q ss_pred EEe--CCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCceeee------------------------------eecCC
Q 040361 278 SLC--HPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKHLAS------------------------------SESNG 325 (413)
Q Consensus 278 ~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~------------------------------~~~~~ 325 (413)
.+. ..+...|.+++|+|+++++++++.|+.|++||++...... ..+..
T Consensus 153 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (366)
T 3k26_A 153 IFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRN 232 (366)
T ss_dssp EECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSS
T ss_pred EecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcc
Confidence 883 2335689999999999999999999999999998432211 12788
Q ss_pred ceeEEEecCCCCEEEEeCCCCeEEEEECCCCce--------------EEEecCCCCcEEEEEEccC--CeEE-EEcCCCe
Q 040361 326 RLNCLELSACGQFLVCGGDQGQIVVRSMNSLEV--------------VRRYSGVGKIITSLAVTPE--ECFL-AGTKDGC 388 (413)
Q Consensus 326 ~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~--------------~~~~~~~~~~v~~~~~~~~--~~~l-~~~~dg~ 388 (413)
.|.+++|+ ++++++++.||.|++||+.+++. +..+..|...|.+++|+|+ +.++ +|+.||.
T Consensus 233 ~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~ 310 (366)
T 3k26_A 233 YVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGK 310 (366)
T ss_dssp CCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSC
T ss_pred eEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCc
Confidence 99999998 78999999999999999987644 7788889999999999999 8766 5999999
Q ss_pred EEEEEecCCccc
Q 040361 389 LLVYSIENRRTS 400 (413)
Q Consensus 389 i~vw~~~~~~~~ 400 (413)
|++||+.+++..
T Consensus 311 i~vwd~~~~~~~ 322 (366)
T 3k26_A 311 LYVWDLEVEDPH 322 (366)
T ss_dssp EEEEECCSSSGG
T ss_pred EEEEECCCCCCc
Confidence 999999987643
No 93
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-33 Score=258.32 Aligned_cols=245 Identities=12% Similarity=0.094 Sum_probs=205.0
Q ss_pred ecceeEEEEecCCCCEEEEeecCCCeEEEEEcC--CCcEEEEee--cCCCeEEEEEECCCCCEEEEccCCCcEEEEEecc
Q 040361 132 LGSQCFTTMQTPSENFLITCGNWENSFQVIALN--DGRVVQSIR--QHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIR 207 (413)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~--~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~ 207 (413)
+...+.++.|+|+++.|+++|+.||.|++||+. +++.+..+. .|...|.+++|+|++++|++|+.||.|++|++.+
T Consensus 101 ~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~ 180 (450)
T 2vdu_B 101 IYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINS 180 (450)
T ss_dssp CCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTS
T ss_pred cCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCC
Confidence 345789999999999987778789999999999 888888886 5779999999999999999999999999999987
Q ss_pred ccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecC---CCEEEEeeCCCcEEEEEccCCeEEEEEeCCCC
Q 040361 208 ARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVE---LDIVISGSKDGTCVFHTLREGRYVRSLCHPSG 284 (413)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 284 (413)
...... +...+.+|...|++++|+|+ +++|++|+.|+.|++||+++++.+..+...+.
T Consensus 181 ~~~~~~-------------------~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~ 241 (450)
T 2vdu_B 181 IPEEKF-------------------TQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHK 241 (450)
T ss_dssp CCCSSC-------------------CCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCS
T ss_pred cccccc-------------------cceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCC
Confidence 652110 23367789999999999999 89999999999999999999988887554446
Q ss_pred CceeeEEEccCCcEEEEECCCCeEEEEEeCC-ceeeeee--------------------------cCCceeEEEecCCCC
Q 040361 285 SALSKLAASRHGRIVLYGDDDLSLHLFSING-KHLASSE--------------------------SNGRLNCLELSACGQ 337 (413)
Q Consensus 285 ~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~--------------------------~~~~i~~~~~s~~~~ 337 (413)
..|.+++|+ ++++|++++.|+.|++||++. +.+.... ....+.+++|+|+++
T Consensus 242 ~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 320 (450)
T 2vdu_B 242 HFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLP 320 (450)
T ss_dssp SCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSS
T ss_pred CceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCC
Confidence 789999999 999999999999999999984 4333321 235688999999999
Q ss_pred EEEEeC-CCCeEEEEEC--CCC---ceEEEecCCCCcEEEEEEccCCeEEEEcC-------CCeEEEEEecCC
Q 040361 338 FLVCGG-DQGQIVVRSM--NSL---EVVRRYSGVGKIITSLAVTPEECFLAGTK-------DGCLLVYSIENR 397 (413)
Q Consensus 338 ~l~~~~-~dg~i~v~d~--~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------dg~i~vw~~~~~ 397 (413)
+|++++ .++.|++|++ .++ +.+..+..| ..|.+++|+|++.+++.+. +..|.+|.+...
T Consensus 321 ~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 321 FVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLN 392 (450)
T ss_dssp EEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred EEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcC
Confidence 999998 8999999999 555 667778777 8899999999776666432 556899988654
No 94
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-34 Score=269.43 Aligned_cols=240 Identities=16% Similarity=0.102 Sum_probs=185.0
Q ss_pred CCCCEEEEeecCCCeEEEEEcCCCcEE----EEeecCCCeEEEEEECCC------CCEEEEccCCCcEEEEEeccccccc
Q 040361 143 PSENFLITCGNWENSFQVIALNDGRVV----QSIRQHRDVVSCVAVTTD------GSILATGSYDTTVMVWEVIRARAPE 212 (413)
Q Consensus 143 ~~~~~l~~~g~~d~~i~i~~~~~~~~~----~~~~~h~~~v~~~~~~~~------~~~l~s~s~dg~i~iw~~~~~~~~~ 212 (413)
|+++.+ ++++.|++|+||++.+++.. ..+.+|.+.|.+++|+|+ +.+|++++.||+|++||+..+....
T Consensus 171 ~~~~~l-aS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~ 249 (524)
T 2j04_B 171 EHLEMF-DKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDV 249 (524)
T ss_dssp ------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSS
T ss_pred hhhhhh-ccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccc
Confidence 334434 44667999999999877642 446678899999999996 5799999999999999997664210
Q ss_pred cccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCe-EEEEEeCCCCCceeeE-
Q 040361 213 KRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGR-YVRSLCHPSGSALSKL- 290 (413)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~~v~~~- 290 (413)
.. ......+...+.+|...|++++|+++ ..|++|+.||+|++||++++. ....+..| ...|.++
T Consensus 250 ~~------------~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H-~~~V~sv~ 315 (524)
T 2j04_B 250 HV------------FKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVH-DSYILSVS 315 (524)
T ss_dssp SE------------EECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECS-SSCEEEEE
T ss_pred cc------------ceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecc-cccEEEEE
Confidence 00 00011245578899999999999986 489999999999999998764 34456655 4589999
Q ss_pred -EEccCC-cEEEEECCCCeEEEEEeCCce-eee-eecC--CceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecC
Q 040361 291 -AASRHG-RIVLYGDDDLSLHLFSINGKH-LAS-SESN--GRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSG 364 (413)
Q Consensus 291 -~~~~~~-~~l~~~~~d~~i~i~d~~~~~-~~~-~~~~--~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~ 364 (413)
++++++ .+|++++.|++|++||++... ... ..+. ..+.+++|+|+++.+++++.|+.|++||++++.++..+.+
T Consensus 316 ~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~g 395 (524)
T 2j04_B 316 TAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVS 395 (524)
T ss_dssp EECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEE
T ss_pred EEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeec
Confidence 578887 899999999999999997422 222 2232 3588999999999999999999999999999998888889
Q ss_pred CCCcEEEEEEccCCeEE-EEcCCCeEEEEEecCC
Q 040361 365 VGKIITSLAVTPEECFL-AGTKDGCLLVYSIENR 397 (413)
Q Consensus 365 ~~~~v~~~~~~~~~~~l-~~~~dg~i~vw~~~~~ 397 (413)
|.+.|++++|+|++.++ +|+.||+|++|++..+
T Consensus 396 H~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~ 429 (524)
T 2j04_B 396 RETTITAIGVSRLHPMVLAGSADGSLIITNAARR 429 (524)
T ss_dssp CSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS
T ss_pred CCCceEEEEeCCCCCeEEEEECCCEEEEEechHh
Confidence 99999999999998655 6999999999998653
No 95
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=3.9e-33 Score=257.28 Aligned_cols=266 Identities=18% Similarity=0.320 Sum_probs=221.6
Q ss_pred CCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeec
Q 040361 95 QSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQ 174 (413)
Q Consensus 95 s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~ 174 (413)
+++|+++++|+.|+.+++|+.... ........+...+.++.++ ++.++ +|+.||.|++||+.+++.+..+.+
T Consensus 126 ~~~g~~l~sg~~dg~i~vwd~~~~-----~~~~~~~~h~~~v~~~~~~--~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~ 197 (445)
T 2ovr_B 126 QFCGNRIVSGSDDNTLKVWSAVTG-----KCLRTLVGHTGGVWSSQMR--DNIII-SGSTDRTLKVWNAETGECIHTLYG 197 (445)
T ss_dssp EEETTEEEEEETTSCEEEEETTTC-----CEEEECCCCSSCEEEEEEE--TTEEE-EEETTSCEEEEETTTTEEEEEECC
T ss_pred EEcCCEEEEEECCCcEEEEECCCC-----cEEEEEcCCCCCEEEEEec--CCEEE-EEeCCCeEEEEECCcCcEEEEECC
Confidence 456899999999999999753211 1122223456677888776 44544 466699999999999999999999
Q ss_pred CCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCC
Q 040361 175 HRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELD 254 (413)
Q Consensus 175 h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~ 254 (413)
|...|.+++|+ ++.|++|+.||.|++||+.+++ .+..+.+|...|.++++ +++
T Consensus 198 h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~-----------------------~~~~~~~~~~~v~~~~~--~~~ 250 (445)
T 2ovr_B 198 HTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQ-----------------------CLHVLMGHVAAVRCVQY--DGR 250 (445)
T ss_dssp CSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCC-----------------------EEEEEECCSSCEEEEEE--CSS
T ss_pred CCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCc-----------------------EEEEEcCCcccEEEEEE--CCC
Confidence 99999999995 5689999999999999998876 67788899999999999 678
Q ss_pred EEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCC-ceeee-eecCCceeEEEe
Q 040361 255 IVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSING-KHLAS-SESNGRLNCLEL 332 (413)
Q Consensus 255 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~-~~~~~~i~~~~~ 332 (413)
++++|+.||.|++||+++++.+..+..+ ...+.++.+ ++.++++++.|+.|++||++. +.+.. ..+...+.++.+
T Consensus 251 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~ 327 (445)
T 2ovr_B 251 RVVSGAYDFMVKVWDPETETCLHTLQGH-TNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL 327 (445)
T ss_dssp CEEEEETTSCEEEEEGGGTEEEEEECCC-SSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCcEeEEecCC-CCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE
Confidence 9999999999999999999999998865 457888888 789999999999999999984 44433 356777777776
Q ss_pred cCCCCEEEEeCCCCeEEEEECCCCceEEEecC---CCCcEEEEEEccCCeEEEEcCCCeEEEEEecCCcccc
Q 040361 333 SACGQFLVCGGDQGQIVVRSMNSLEVVRRYSG---VGKIITSLAVTPEECFLAGTKDGCLLVYSIENRRTSL 401 (413)
Q Consensus 333 s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~dg~i~vw~~~~~~~~~ 401 (413)
+++++++|+.||.|++||+.+++.+..+.. |...|.+++|++ ..+++|+.||.|++||+.+++...
T Consensus 328 --~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~ 396 (445)
T 2ovr_B 328 --KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK-NFVITSSDDGTVKLWDLKTGEFIR 396 (445)
T ss_dssp --ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS-SEEEEEETTSEEEEEETTTCCEEE
T ss_pred --eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECC-CEEEEEeCCCeEEEEECCCCceee
Confidence 577999999999999999999999998886 888999999974 456689999999999999886543
No 96
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=1.2e-33 Score=259.31 Aligned_cols=253 Identities=13% Similarity=0.194 Sum_probs=212.3
Q ss_pred ccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCC----------CcEEEEeecCCCeEEEEEECCCCC-EEEEccC
Q 040361 128 ESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALND----------GRVVQSIRQHRDVVSCVAVTTDGS-ILATGSY 196 (413)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~----------~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~ 196 (413)
..+.|...+.++.|+|++..++++|+.||.|++|++.+ .+.+..+.+|...|++++|+|++. +|++|+.
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 202 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASD 202 (430)
T ss_dssp EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECT
T ss_pred EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeC
Confidence 45667788999999998777777788899999999976 677788899999999999999988 9999999
Q ss_pred CCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEec-CCCEEEEeeCCCcEEEEEccCC--
Q 040361 197 DTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSV-ELDIVISGSKDGTCVFHTLREG-- 273 (413)
Q Consensus 197 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~-- 273 (413)
||.|++|++..+....... .+...+.+|...|.+++|+| ++.+|++++.||.|++||++++
T Consensus 203 dg~i~vwd~~~~~~~~~~~----------------~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~ 266 (430)
T 2xyi_A 203 DHTICLWDINATPKEHRVI----------------DAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT 266 (430)
T ss_dssp TSCEEEEETTSCCBGGGEE----------------ECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS
T ss_pred CCeEEEEeCCCCCCCCcee----------------ccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC
Confidence 9999999998743211100 12456678999999999999 6789999999999999999987
Q ss_pred -eEEEEEeCCCCCceeeEEEccCCc-EEEEECCCCeEEEEEeCC--ceeee-eecCCceeEEEecCCCC-EEEEeCCCCe
Q 040361 274 -RYVRSLCHPSGSALSKLAASRHGR-IVLYGDDDLSLHLFSING--KHLAS-SESNGRLNCLELSACGQ-FLVCGGDQGQ 347 (413)
Q Consensus 274 -~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~--~~~~~-~~~~~~i~~~~~s~~~~-~l~~~~~dg~ 347 (413)
+.+..+..+ ...|++++|+|++. ++++++.|+.|++||++. ..+.. ..|...|.+++|+|+++ +|++++.||.
T Consensus 267 ~~~~~~~~~~-~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~ 345 (430)
T 2xyi_A 267 SKPSHTVDAH-TAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR 345 (430)
T ss_dssp SSCSEEEECC-SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSC
T ss_pred CcceeEeecC-CCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCc
Confidence 466666554 56899999999887 788999999999999984 33333 35889999999999985 7999999999
Q ss_pred EEEEECCC--------------CceEEEecCCCCcEEEEEEccCCe--EEEEcCCCeEEEEEecCC
Q 040361 348 IVVRSMNS--------------LEVVRRYSGVGKIITSLAVTPEEC--FLAGTKDGCLLVYSIENR 397 (413)
Q Consensus 348 i~v~d~~~--------------~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~dg~i~vw~~~~~ 397 (413)
|++||+.. .+.+..+.+|...|++++|+|++. +++++.||.|++|++.+.
T Consensus 346 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 346 LHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred EEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 99999987 366777888999999999999975 446999999999999864
No 97
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-34 Score=263.11 Aligned_cols=278 Identities=12% Similarity=0.187 Sum_probs=211.3
Q ss_pred CCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccc-e-ecceeEEEEecC-CCCEEEEeecCCCeEEEEEcCC---C
Q 040361 93 QLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESF-E-LGSQCFTTMQTP-SENFLITCGNWENSFQVIALND---G 166 (413)
Q Consensus 93 ~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~-~~~~l~~~g~~d~~i~i~~~~~---~ 166 (413)
.|+|++..+++++ . |.+. ......+ . |...+.+++|+| +++++++ |+.||.|++||+.+ +
T Consensus 34 ~f~~~~~~~~~~~------~----w~~~---g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s-~s~dg~v~vwd~~~~~~~ 99 (437)
T 3gre_A 34 EFGPIQEIVRSPN------M----GNLR---GKLIATLMENEPNSITSSAVSPGETPYLIT-GSDQGVIKIWNLKEIIVG 99 (437)
T ss_dssp GGCCCCCCCCCCC------G----GGCC---CCEEEEECTTTTSCEEEEEEECSSSCEEEE-EETTSEEEEEEHHHHHTT
T ss_pred hcCCccccccccc------c----cccc---ceEEeeeccCCCCceEEEEECCCCCCEEEE-ecCCceEEEeECcccccC
Confidence 4678887777665 2 3222 1112222 2 357899999999 7777766 55699999999876 4
Q ss_pred c---EEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEec---cccccccccccceeecCCCceeeecCceeeee--
Q 040361 167 R---VVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVI---RARAPEKRVRNMQIEAPRKDYVIVETPFHILC-- 238 (413)
Q Consensus 167 ~---~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 238 (413)
. ....+ .|...|.+++|+|++++|++|+.||.|++||++ +++... ... ...+..+.
T Consensus 100 ~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~----~~~-----------~~~i~~~~~~ 163 (437)
T 3gre_A 100 EVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVK----FLN-----------CECIRKINLK 163 (437)
T ss_dssp CCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEE----EEE-----------EEEEEEEEGG
T ss_pred cccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceee----ccc-----------cceeEEEEcc
Confidence 3 22333 499999999999999999999999999999996 332100 000 00122221
Q ss_pred c--CCCCeEEEE--EecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCC-CCCceeeEEEccCCcEEEEECCCCeEEEEEe
Q 040361 239 G--HDDIITCLY--VSVELDIVISGSKDGTCVFHTLREGRYVRSLCHP-SGSALSKLAASRHGRIVLYGDDDLSLHLFSI 313 (413)
Q Consensus 239 ~--h~~~i~~~~--~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~ 313 (413)
. +...+.++. ++++++++++++.|+.|++||+++++.+..+..+ +...|.+++|+|+++++++++.|+.|++||+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 243 (437)
T 3gre_A 164 NFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDI 243 (437)
T ss_dssp GGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEET
T ss_pred CcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEc
Confidence 2 667788888 5578999999999999999999999999999863 3568999999999999999999999999999
Q ss_pred CCce-eeee--ecCCceeEEEec----CCCCEEEEeCCCCeEEEEECCCCceEEEecC----------------------
Q 040361 314 NGKH-LASS--ESNGRLNCLELS----ACGQFLVCGGDQGQIVVRSMNSLEVVRRYSG---------------------- 364 (413)
Q Consensus 314 ~~~~-~~~~--~~~~~i~~~~~s----~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~---------------------- 364 (413)
+... +... .+...|.+++|+ |++.+|++|+.||.|++||+.+++.+..+.+
T Consensus 244 ~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 323 (437)
T 3gre_A 244 RFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNF 323 (437)
T ss_dssp TTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCC
T ss_pred CCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceeccccccccccee
Confidence 8444 4433 567789999555 5688999999999999999999988877764
Q ss_pred ----CCCcEEEEEEccCCe-EEEEcCCCeEEEEEecCCcccc
Q 040361 365 ----VGKIITSLAVTPEEC-FLAGTKDGCLLVYSIENRRTSL 401 (413)
Q Consensus 365 ----~~~~v~~~~~~~~~~-~l~~~~dg~i~vw~~~~~~~~~ 401 (413)
|...|++++|+ ++. +++|+.||.|++||+.+++...
T Consensus 324 ~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~ 364 (437)
T 3gre_A 324 CGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSK 364 (437)
T ss_dssp CCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCE
T ss_pred cccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccce
Confidence 44568889999 554 5579999999999999886553
No 98
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=4.4e-34 Score=262.60 Aligned_cols=247 Identities=11% Similarity=0.091 Sum_probs=194.2
Q ss_pred ceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEE--EEeecCCCeEEEEEECC-CCCEEEEccCCCcEEEEEec
Q 040361 130 FELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVV--QSIRQHRDVVSCVAVTT-DGSILATGSYDTTVMVWEVI 206 (413)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~--~~~~~h~~~v~~~~~~~-~~~~l~s~s~dg~i~iw~~~ 206 (413)
..+...|.+++|+|.+..++++|+.||.|+|||+.+++.. ..+.+|.+.|++|+|+| ++++|++|+.||+|++||++
T Consensus 116 ~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~ 195 (435)
T 4e54_B 116 APFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFK 195 (435)
T ss_dssp EECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETT
T ss_pred CCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeecc
Confidence 3456679999999987777777888999999999876544 44568999999999998 78999999999999999997
Q ss_pred cccccccccccceeecCCCceeeecCceeee---ecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCC
Q 040361 207 RARAPEKRVRNMQIEAPRKDYVIVETPFHIL---CGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPS 283 (413)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 283 (413)
+.. ...+ ..+...+.+++|++++++|++|+.||.|++||++ ++.+..+..+
T Consensus 196 ~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h- 249 (435)
T 4e54_B 196 GNI------------------------LRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMH- 249 (435)
T ss_dssp SCE------------------------EEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCC-
T ss_pred CCc------------------------eeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecc-
Confidence 653 2222 2334567899999999999999999999999986 4555566655
Q ss_pred CCceeeEEEccCCc-EEEEECCCCeEEEEEeCCce-----eeeeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCc
Q 040361 284 GSALSKLAASRHGR-IVLYGDDDLSLHLFSINGKH-----LASSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLE 357 (413)
Q Consensus 284 ~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~-----~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~ 357 (413)
...|.+++|+|++. ++++++.|+.|++||++... .....|...|++++|+|+|++|++++.||.|++||+.+++
T Consensus 250 ~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~ 329 (435)
T 4e54_B 250 KKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWD 329 (435)
T ss_dssp SSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSS
T ss_pred cceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCc
Confidence 45899999999875 78899999999999997322 1224688899999999999999999999999999999988
Q ss_pred eEEEecCCCC------cEEEEEEccCCeEE-EE------------cCCCeEEEEEecCCccccc
Q 040361 358 VVRRYSGVGK------IITSLAVTPEECFL-AG------------TKDGCLLVYSIENRRTSLP 402 (413)
Q Consensus 358 ~~~~~~~~~~------~v~~~~~~~~~~~l-~~------------~~dg~i~vw~~~~~~~~~~ 402 (413)
....+..|.. .+....|+|++.++ ++ ..++.|++||..+++....
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~ 393 (435)
T 4e54_B 330 CPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQ 393 (435)
T ss_dssp SEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEE
T ss_pred cceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEE
Confidence 8777665532 23344566654333 22 2446799999998865543
No 99
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-34 Score=258.95 Aligned_cols=252 Identities=13% Similarity=0.134 Sum_probs=200.5
Q ss_pred ccCCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEE
Q 040361 91 TTQLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQ 170 (413)
Q Consensus 91 ~~~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~ 170 (413)
..++||||.++|+++.|++++ + +... ..+ -+|...+..+.|+|+| .++.+.+|+.+.. .
T Consensus 20 sv~~SpDG~~iASas~D~TV~--d----~~~~-~~l---~gh~~~v~~V~FsPdg--------~~~~~~~~~~~~~---~ 78 (588)
T 2j04_A 20 NLTWARDGTLYLTTFPDISIG--Q----PKYA-KDI---NCNSKNLFHVKEFPLE--------FENKLDFELAQQN---G 78 (588)
T ss_dssp CEEECTTSCEEEECSSSEEEE--E----ECCC-SCC---SSBGGGTEEEEEECCC--------CCCTTTTSCCCSS---C
T ss_pred EEEECCCCCEEEEEcCCceee--c----cccc-cee---cCCCccEEEEEECCCC--------CcceEEEEeCCCc---e
Confidence 347899999999999999998 2 1111 112 2578899999999998 3666666654322 2
Q ss_pred Eee-cCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCC-----Ce
Q 040361 171 SIR-QHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDD-----II 244 (413)
Q Consensus 171 ~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~i 244 (413)
.+. .|...|.+++|+|||.+|++++.||.|++||... .+..+. |.. .|
T Consensus 79 ~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-------------------------~l~~l~-~~~~~~~~sv 132 (588)
T 2j04_A 79 LLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-------------------------MLTNLD-SKGNLSSRTY 132 (588)
T ss_dssp SSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE-------------------------EEEECC-CSSCSTTTCE
T ss_pred EeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-------------------------eeeecc-CCCccccccE
Confidence 233 4688999999999999999999999999999432 244455 555 59
Q ss_pred EEEEEecCCCEEEEeeCCCcEEEEEccCCe-------EEEEEe---CCCCCceeeEEEccCCcEEEEECCCCeEEEEEeC
Q 040361 245 TCLYVSVELDIVISGSKDGTCVFHTLREGR-------YVRSLC---HPSGSALSKLAASRHGRIVLYGDDDLSLHLFSIN 314 (413)
Q Consensus 245 ~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-------~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~ 314 (413)
.+++|+|+|++|++|+.||+|++||+..+. .+.++. ..+...|.+++|+|+| +++++.|+.+++||+.
T Consensus 133 ~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~ 210 (588)
T 2j04_A 133 HCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVS 210 (588)
T ss_dssp EEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCC
T ss_pred EEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECC
Confidence 999999999999999999999999998875 356663 2235689999999999 7888889999999998
Q ss_pred Cceee----ee--ecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEE--ccCCeEEE-EcC
Q 040361 315 GKHLA----SS--ESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAV--TPEECFLA-GTK 385 (413)
Q Consensus 315 ~~~~~----~~--~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~-~~~ 385 (413)
+.... .. .|...|.+++|+ |+.||+++ ++.|++||+.+++......+|.+.|.+++| +|++..++ ++.
T Consensus 211 ~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~e 287 (588)
T 2j04_A 211 ASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNK 287 (588)
T ss_dssp SSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSS
T ss_pred CCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcC
Confidence 65532 22 567889999999 68999987 699999999988774444479999999999 99987664 888
Q ss_pred CCeEEEEEec
Q 040361 386 DGCLLVYSIE 395 (413)
Q Consensus 386 dg~i~vw~~~ 395 (413)
||+ ++|..+
T Consensus 288 dG~-klw~~d 296 (588)
T 2j04_A 288 TSY-KVLLED 296 (588)
T ss_dssp CEE-EEEESS
T ss_pred CCC-EEEeec
Confidence 999 999986
No 100
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=3.1e-34 Score=252.06 Aligned_cols=239 Identities=13% Similarity=0.071 Sum_probs=189.0
Q ss_pred ccCCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCC--CCEEEEeecCCCeEEEEEcCCC--
Q 040361 91 TTQLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPS--ENFLITCGNWENSFQVIALNDG-- 166 (413)
Q Consensus 91 ~~~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~g~~d~~i~i~~~~~~-- 166 (413)
..+|+|+|++|++|+.|+++++|+...... ........|...+.++.|+++ ++.|++ |+.|+.|++||+.++
T Consensus 18 ~v~~s~~g~~lasgs~D~~v~lwd~~~~~~---~~~~~l~gH~~~V~~v~~~~~~~~~~l~s-~s~D~~v~iWd~~~~~~ 93 (316)
T 3bg1_A 18 DAQMDYYGTRLATCSSDRSVKIFDVRNGGQ---ILIADLRGHEGPVWQVAWAHPMYGNILAS-CSYDRKVIIWREENGTW 93 (316)
T ss_dssp EEEECGGGCEEEEEETTTEEEEEEEETTEE---EEEEEEECCSSCEEEEEECCGGGSSCEEE-EETTSCEEEECCSSSCC
T ss_pred EeeEcCCCCEEEEEeCCCeEEEEEecCCCc---EEEEEEcCCCccEEEEEeCCCCCCCEEEE-EECCCEEEEEECCCCcc
Confidence 346789999999999999999975321110 011122345678899999864 555555 566999999999887
Q ss_pred cEEEEeecCCCeEEEEEECCC--CCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCe
Q 040361 167 RVVQSIRQHRDVVSCVAVTTD--GSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDII 244 (413)
Q Consensus 167 ~~~~~~~~h~~~v~~~~~~~~--~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i 244 (413)
+....+.+|...|.+++|+|+ +.+|++|+.|+.|++||+...... .....+.+|...|
T Consensus 94 ~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~--------------------~~~~~~~~h~~~v 153 (316)
T 3bg1_A 94 EKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQW--------------------EVKKINNAHTIGC 153 (316)
T ss_dssp CEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCE--------------------EECCBTTSSSSCB
T ss_pred eEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCc--------------------ceeeeeccccCCc
Confidence 466778899999999999997 789999999999999999765310 0134456899999
Q ss_pred EEEEEecC-----------------CCEEEEeeCCCcEEEEEccCC---eEEEEEeCCCCCceeeEEEccCC----cEEE
Q 040361 245 TCLYVSVE-----------------LDIVISGSKDGTCVFHTLREG---RYVRSLCHPSGSALSKLAASRHG----RIVL 300 (413)
Q Consensus 245 ~~~~~~~~-----------------~~~l~s~~~dg~i~vwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~----~~l~ 300 (413)
.+++|+|+ +++|++|+.|+.|++||++.. +.+..+..| ...|.+++|+|++ .+|+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h-~~~V~~v~~sp~~~~~~~~la 232 (316)
T 3bg1_A 154 NAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAH-SDWVRDVAWAPSIGLPTSTIA 232 (316)
T ss_dssp CCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCC-SSCEEEEECCCCSSCSCCEEE
T ss_pred ceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccC-CCceEEEEecCCCCCCCceEE
Confidence 99999987 468999999999999999755 355556655 4689999999986 8899
Q ss_pred EECCCCeEEEEEeCCc------eeeeeecCCceeEEEecCCCCEEEEeCCCCeEEEEECC
Q 040361 301 YGDDDLSLHLFSINGK------HLASSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMN 354 (413)
Q Consensus 301 ~~~~d~~i~i~d~~~~------~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~ 354 (413)
+++.|++|++||++.. ......+...|.+++|+|++++|++++.||.|++|+..
T Consensus 233 s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 233 SCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred EEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 9999999999998741 11224578899999999999999999999999999976
No 101
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=9.6e-33 Score=250.01 Aligned_cols=238 Identities=13% Similarity=0.129 Sum_probs=177.3
Q ss_pred eEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEE-----EeecCCCeEEEEEECC--------CCCEEEEccCCCcEEE
Q 040361 136 CFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQ-----SIRQHRDVVSCVAVTT--------DGSILATGSYDTTVMV 202 (413)
Q Consensus 136 ~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~-----~~~~h~~~v~~~~~~~--------~~~~l~s~s~dg~i~i 202 (413)
.....+.+.+..++++|+.|++|+|||..+++... .+.+|.+.|.+++|+| |+++|++|+.|++|++
T Consensus 91 ~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~ 170 (393)
T 4gq1_A 91 DGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLII 170 (393)
T ss_dssp ------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEE
T ss_pred CcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEE
Confidence 34445556666777778889999999998886543 3578999999999997 7899999999999999
Q ss_pred EEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCC-EEEEeeCCCcEEEEEccCCeEEEEEe-
Q 040361 203 WEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELD-IVISGSKDGTCVFHTLREGRYVRSLC- 280 (413)
Q Consensus 203 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~- 280 (413)
||+.++. ++..+.+|...+.+++|+|++. +|++++.|++|++||+++++......
T Consensus 171 Wd~~~~~-----------------------~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~ 227 (393)
T 4gq1_A 171 WRLTDEG-----------------------PILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQ 227 (393)
T ss_dssp EEEETTE-----------------------EEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC-------
T ss_pred EECCCCc-----------------------eeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccc
Confidence 9998776 5677788999999999999874 89999999999999999876543321
Q ss_pred -----------------------CCCCCceeeEEEc-cCCcEEEEECCCCeEEEEEeCCceee-e-eecCC---------
Q 040361 281 -----------------------HPSGSALSKLAAS-RHGRIVLYGDDDLSLHLFSINGKHLA-S-SESNG--------- 325 (413)
Q Consensus 281 -----------------------~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~i~d~~~~~~~-~-~~~~~--------- 325 (413)
..+...+.++.|+ ++++.+++++.|+.+++||+...... . ..+..
T Consensus 228 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~ 307 (393)
T 4gq1_A 228 TELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLP 307 (393)
T ss_dssp ---CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSC
T ss_pred cCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcc
Confidence 1123457778876 79999999999999999998632211 1 11111
Q ss_pred ---------ceeEEEecC--CCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEccCCeEEEEcCCCeEEEEEe
Q 040361 326 ---------RLNCLELSA--CGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFLAGTKDGCLLVYSI 394 (413)
Q Consensus 326 ---------~i~~~~~s~--~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~dg~i~vw~~ 394 (413)
......++| ++.++++|+.||.|++||+.+++....+..|..+|.+++|+|||++|+.+.++.+.+|.+
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv~lvrL 387 (393)
T 4gq1_A 308 NVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSVLLTRL 387 (393)
T ss_dssp SEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSEEEEEEE
T ss_pred ccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 122223333 345678889999999999999998888888999999999999998887445566778877
Q ss_pred cC
Q 040361 395 EN 396 (413)
Q Consensus 395 ~~ 396 (413)
..
T Consensus 388 ~g 389 (393)
T 4gq1_A 388 MG 389 (393)
T ss_dssp GG
T ss_pred eC
Confidence 54
No 102
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.1e-32 Score=246.91 Aligned_cols=265 Identities=17% Similarity=0.191 Sum_probs=210.8
Q ss_pred EEEeecCCcEEEEecCceEEEEEeec--------cCCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeE
Q 040361 66 VYVGMLDSSIVLVNQGLTLSVKMWLT--------TQLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCF 137 (413)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (413)
++++..++.+.+|+............ ..|+|+++++++|+.|+.+++|+.... ........+...+.
T Consensus 106 l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~v~ 180 (401)
T 4aez_A 106 VVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ-----TKLRTMAGHQARVG 180 (401)
T ss_dssp EEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC-----CEEEEECCCSSCEE
T ss_pred EEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC-----eEEEEecCCCCceE
Confidence 55677889999999776655554432 358999999999999999999753211 11122224566778
Q ss_pred EEEecCCCCEEEEeecCCCeEEEEEcC-CCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccc
Q 040361 138 TTMQTPSENFLITCGNWENSFQVIALN-DGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVR 216 (413)
Q Consensus 138 ~~~~~~~~~~l~~~g~~d~~i~i~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~ 216 (413)
++.| +++.++ +|+.||.|++||+. .+.....+.+|.+.|.+++|+|++++|++|+.||.|++||+.++.
T Consensus 181 ~~~~--~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~------- 250 (401)
T 4aez_A 181 CLSW--NRHVLS-SGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSI------- 250 (401)
T ss_dssp EEEE--ETTEEE-EEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSS-------
T ss_pred EEEE--CCCEEE-EEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCC-------
Confidence 8877 445555 46669999999998 567788899999999999999999999999999999999998876
Q ss_pred cceeecCCCceeeecCceeeeecCCCCeEEEEEecCCC-EEEEee--CCCcEEEEEccCCeEEEEEeCCCCCceeeEEEc
Q 040361 217 NMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELD-IVISGS--KDGTCVFHTLREGRYVRSLCHPSGSALSKLAAS 293 (413)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~-~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~ 293 (413)
+...+..|...|.+++|+|++. ++++++ .|+.|++||+++++.+..+..+ ..+.+++|+
T Consensus 251 ----------------~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~--~~v~~~~~s 312 (401)
T 4aez_A 251 ----------------PKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAG--SQVTSLIWS 312 (401)
T ss_dssp ----------------EEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECS--SCEEEEEEC
T ss_pred ----------------ccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCC--CcEEEEEEC
Confidence 5777889999999999999764 666654 7999999999999999888753 479999999
Q ss_pred cCCcEEEE--ECCCCeEEEEEeCCceee----eeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEec
Q 040361 294 RHGRIVLY--GDDDLSLHLFSINGKHLA----SSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYS 363 (413)
Q Consensus 294 ~~~~~l~~--~~~d~~i~i~d~~~~~~~----~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~ 363 (413)
|++..+++ |+.|+.|++||++..... ...|...|.+++|+|++++|++++.||.|++||+.+++.+....
T Consensus 313 ~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~ 388 (401)
T 4aez_A 313 PHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPI 388 (401)
T ss_dssp SSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC--------
T ss_pred CCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccccccc
Confidence 99999999 558999999999853322 23678899999999999999999999999999999988776543
No 103
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=3.6e-31 Score=239.90 Aligned_cols=268 Identities=12% Similarity=0.094 Sum_probs=218.0
Q ss_pred ceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCe
Q 040361 99 NFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDV 178 (413)
Q Consensus 99 ~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~ 178 (413)
.++++++.|+.+++|+... ......+..+..+.++.++|+++.++++++.|+.|++||+.+++.+..+..+. .
T Consensus 3 ~l~vs~~~d~~v~v~d~~~------~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~ 75 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTS------NKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-S 75 (391)
T ss_dssp EEEEEETTTTEEEEEETTT------TEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-S
T ss_pred EEEEEcCCCCEEEEEECCC------CeEEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-C
Confidence 3567777888888864211 11222344566788999999999998888779999999999999999888665 8
Q ss_pred EEEEEECCCCCEEE-EccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEE-
Q 040361 179 VSCVAVTTDGSILA-TGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIV- 256 (413)
Q Consensus 179 v~~~~~~~~~~~l~-s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l- 256 (413)
+.+++|+|++++|+ +++.|+.|++||+.+++ .+..+. +...+.+++|+|+++.+
T Consensus 76 v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~-----------------------~~~~~~-~~~~~~~~~~s~dg~~l~ 131 (391)
T 1l0q_A 76 PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT-----------------------VAGTVK-TGKSPLGLALSPDGKKLY 131 (391)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEETTTTE-----------------------EEEEEE-CSSSEEEEEECTTSSEEE
T ss_pred ccceEECCCCCEEEEEECCCCEEEEEECCCCe-----------------------EEEEEe-CCCCcceEEECCCCCEEE
Confidence 99999999999875 55577999999998876 344444 44568999999999977
Q ss_pred EEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEE-EEECCCCeEEEEEeCCc-eeeeeecCCceeEEEecC
Q 040361 257 ISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIV-LYGDDDLSLHLFSINGK-HLASSESNGRLNCLELSA 334 (413)
Q Consensus 257 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~-~~~~~~~~~~i~~~~~s~ 334 (413)
++++.|+.|++||+.+++.+..+..+ ..+..++|+|+++.+ ++++.++.|++||++.. ......+...+.+++|+|
T Consensus 132 ~~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~ 209 (391)
T 1l0q_A 132 VTNNGDKTVSVINTVTKAVINTVSVG--RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNP 209 (391)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECC--SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECT
T ss_pred EEeCCCCEEEEEECCCCcEEEEEecC--CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECC
Confidence 78888999999999999998888764 367999999999877 67788999999999854 444456777899999999
Q ss_pred CCCEEEEeC---CCCeEEEEECCCCceEEEecCCCCcEEEEEEccCCeEE--EEcCCCeEEEEEecCCccc
Q 040361 335 CGQFLVCGG---DQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFL--AGTKDGCLLVYSIENRRTS 400 (413)
Q Consensus 335 ~~~~l~~~~---~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l--~~~~dg~i~vw~~~~~~~~ 400 (413)
+++++++++ .++.|++||+.+++.+..+..+. .+.+++|+|+++++ +++.|+.|++||+.+++..
T Consensus 210 ~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~ 279 (391)
T 1l0q_A 210 EGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTIT 279 (391)
T ss_dssp TSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred CCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEE
Confidence 999999887 68999999999999988888665 57899999998543 5788999999999987644
No 104
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.6e-32 Score=245.75 Aligned_cols=278 Identities=9% Similarity=0.064 Sum_probs=199.5
Q ss_pred EEecCCCCCCeEEEEeecC-------CcEEEEecCceE--------EEEE-ee------ccCCCCCCceee---------
Q 040361 54 IICSTRHQPSGIVYVGMLD-------SSIVLVNQGLTL--------SVKM-WL------TTQLQSGGNFTF--------- 102 (413)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~--------~~~~-~~------~~~~s~~~~~l~--------- 102 (413)
+.+..+.+++.+++.|+.+ +.+.+|+..... .... -. ...++++++.++
T Consensus 17 V~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~~~~ 96 (365)
T 4h5i_A 17 AYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNENSTK 96 (365)
T ss_dssp EEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCCHHH
T ss_pred EEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCCccE
Confidence 5566678888888887643 357888743211 0110 00 012344455444
Q ss_pred --ecCCCCccccCCCcCCCcccC----CCCcccceecceeEEEEecCCCCEEEE-eecCCCeEEEEEcCCCcEEEEeecC
Q 040361 103 --SGSQDPFFGVGADILSPRNVG----SPLAESFELGSQCFTTMQTPSENFLIT-CGNWENSFQVIALNDGRVVQSIRQH 175 (413)
Q Consensus 103 --~~~~d~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~d~~i~i~~~~~~~~~~~~~~h 175 (413)
+++.|+.+++|.......... ............+..++|+|+|+++++ +|+.|+.|+|||+.+++.+..+. |
T Consensus 97 l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~ 175 (365)
T 4h5i_A 97 ITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-T 175 (365)
T ss_dssp HHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-C
T ss_pred EEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-C
Confidence 455666677653211111000 001111112334677899999999865 56679999999999999998886 7
Q ss_pred CCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCE
Q 040361 176 RDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDI 255 (413)
Q Consensus 176 ~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~ 255 (413)
...|.+++|+|||++|++++.+ .+++|+..++... ......+|...|.+++|+|+++.
T Consensus 176 ~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~---------------------~~~~~~~~~~~v~~v~fspdg~~ 233 (365)
T 4h5i_A 176 RGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCI---------------------ARKTDFDKNWSLSKINFIADDTV 233 (365)
T ss_dssp SSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEE---------------------EEECCCCTTEEEEEEEEEETTEE
T ss_pred CCceEEEEEccCCceEEeccce-eEEEEEeccCcce---------------------eeeecCCCCCCEEEEEEcCCCCE
Confidence 7889999999999999999865 5666766655410 12345678899999999999999
Q ss_pred EEEeeCCC----cEEEEEccCCeEE----EEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCC-ceeee--eecC
Q 040361 256 VISGSKDG----TCVFHTLREGRYV----RSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSING-KHLAS--SESN 324 (413)
Q Consensus 256 l~s~~~dg----~i~vwd~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~--~~~~ 324 (413)
+++++.|+ .+++||+...... ..+..+ ...|++++|+|+|++|++|+.|+.|++||++. +.+.. ..|.
T Consensus 234 l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~ 312 (365)
T 4h5i_A 234 LIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNR-FKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHS 312 (365)
T ss_dssp EEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESS-CSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSS
T ss_pred EEEEecCCcceeEEeecccccceecceeeeeecCC-CCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCccc
Confidence 99999887 6888998876542 334444 45899999999999999999999999999984 44444 3589
Q ss_pred CceeEEEecCCCCEEEEeCCCCeEEEEECCC
Q 040361 325 GRLNCLELSACGQFLVCGGDQGQIVVRSMNS 355 (413)
Q Consensus 325 ~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~ 355 (413)
..|++++|+|||++|++|+.|++|+|||+..
T Consensus 313 ~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 313 FAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp SCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred CCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 9999999999999999999999999999964
No 105
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.1e-33 Score=271.47 Aligned_cols=244 Identities=12% Similarity=0.189 Sum_probs=205.5
Q ss_pred eecceeEEEEecCCCCEEEEeecCCCeEEEEEcC--CCcEEEEeecCCCeEEEEEECCC--CCEEEEccCCCcEEEEEec
Q 040361 131 ELGSQCFTTMQTPSENFLITCGNWENSFQVIALN--DGRVVQSIRQHRDVVSCVAVTTD--GSILATGSYDTTVMVWEVI 206 (413)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~s~dg~i~iw~~~ 206 (413)
.|.+.+.++.|+|+++++++++ .||.|++||+. +++....+.+|.+.|++++|+|+ +++|++|+.||.|++||+.
T Consensus 7 gH~~~V~~l~~s~dg~~latg~-~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~ 85 (753)
T 3jro_A 7 AHNELIHDAVLDYYGKRLATCS-SDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEE 85 (753)
T ss_dssp -CCCCEEEECCCSSSCCEEEEE-TTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEE
T ss_pred cCcceeEEEEECCCCCeEEEEE-CCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECC
Confidence 4567889999999999877755 59999999997 55778889999999999999988 9999999999999999998
Q ss_pred cccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecC--CCEEEEeeCCCcEEEEEccCCe--EEEEEeCC
Q 040361 207 RARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVE--LDIVISGSKDGTCVFHTLREGR--YVRSLCHP 282 (413)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~--~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~ 282 (413)
++.. .....+.+|...|++++|+|+ ++.+++|+.||.|++||++++. ....+..+
T Consensus 86 ~~~~---------------------~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~ 144 (753)
T 3jro_A 86 NGRW---------------------SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAH 144 (753)
T ss_dssp TTEE---------------------EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECC
T ss_pred CCcc---------------------cccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecC
Confidence 7641 135667889999999999999 9999999999999999998773 23344443
Q ss_pred CCCceeeEEEcc-------------CCcEEEEECCCCeEEEEEeCCc----ee-ee-eecCCceeEEEecCC---CCEEE
Q 040361 283 SGSALSKLAASR-------------HGRIVLYGDDDLSLHLFSINGK----HL-AS-SESNGRLNCLELSAC---GQFLV 340 (413)
Q Consensus 283 ~~~~v~~~~~~~-------------~~~~l~~~~~d~~i~i~d~~~~----~~-~~-~~~~~~i~~~~~s~~---~~~l~ 340 (413)
...|.+++|+| ++..+++++.||.|++||++.. .. .. ..|...|.+++|+|+ +++++
T Consensus 145 -~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~ 223 (753)
T 3jro_A 145 -AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLA 223 (753)
T ss_dssp -SSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEE
T ss_pred -CCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEE
Confidence 56899999999 5899999999999999999743 11 12 357889999999999 89999
Q ss_pred EeCCCCeEEEEECCCCc-----eEEEecCCCCcEEEEEEccCCeEE-EEcCCCeEEEEEecCC
Q 040361 341 CGGDQGQIVVRSMNSLE-----VVRRYSGVGKIITSLAVTPEECFL-AGTKDGCLLVYSIENR 397 (413)
Q Consensus 341 ~~~~dg~i~v~d~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l-~~~~dg~i~vw~~~~~ 397 (413)
+|+.||.|++||+.+++ .......|...|++++|+|++.++ +++.||.|++|++..+
T Consensus 224 s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 224 SVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp EEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred EEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 99999999999999864 333344688899999999998655 6999999999999864
No 106
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.3e-33 Score=246.80 Aligned_cols=238 Identities=9% Similarity=0.103 Sum_probs=183.3
Q ss_pred ecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEecccccccccccccee
Q 040361 141 QTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQI 220 (413)
Q Consensus 141 ~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~ 220 (413)
+++++..++ +|+.||.|++||+.+++.+..+. ...|.++.|+|+ +++++.|++|++|+.........
T Consensus 44 ~~~d~~~l~-sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~------- 110 (343)
T 3lrv_A 44 MYYDKWVCM-CRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILD------- 110 (343)
T ss_dssp SSEEEEEEE-EEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEE-------
T ss_pred hcCCCCEEE-EECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEee-------
Confidence 344455444 56669999999999999888886 467888889887 99999999999998764320000
Q ss_pred ecCCCceeeecCceeee-ecCCCCeEEEEEec--CCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCc
Q 040361 221 EAPRKDYVIVETPFHIL-CGHDDIITCLYVSV--ELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGR 297 (413)
Q Consensus 221 ~~~~~~~~~~~~~~~~~-~~h~~~i~~~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 297 (413)
... ...+..+ .+|.+.|.+++|+| +++++++++.||.|++||+++++.......++...+.+++|+|++.
T Consensus 111 -~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~ 183 (343)
T 3lrv_A 111 -SKT------NKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSL 183 (343)
T ss_dssp -TTT------CCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSC
T ss_pred -cCC------cceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCC
Confidence 000 0012222 36778999999999 9999999999999999999999987776555566799999999999
Q ss_pred EEEEECCCCeEEEEEeCC-cee-ee-ee-cCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecC---CCCcEE
Q 040361 298 IVLYGDDDLSLHLFSING-KHL-AS-SE-SNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSG---VGKIIT 370 (413)
Q Consensus 298 ~l~~~~~d~~i~i~d~~~-~~~-~~-~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~---~~~~v~ 370 (413)
++++|+.|+.|++||++. ..+ .. .. |...|.+++|+|++.+|++++. +.|++||+++++.+..+.. |...+.
T Consensus 184 ~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 262 (343)
T 3lrv_A 184 LLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECD-QTVVCFDLRKDVGTLAYPTYTIPEFKTG 262 (343)
T ss_dssp EEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEES-SBEEEEETTSSTTCBSSCCCBC-----C
T ss_pred EEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeC-CeEEEEEcCCCCcceeeccccccccccc
Confidence 999999999999999984 333 22 34 7899999999999999999994 5999999999877655543 333443
Q ss_pred --EEEEccCCeEEE-EcC-CCeEEEEEecCCcc
Q 040361 371 --SLAVTPEECFLA-GTK-DGCLLVYSIENRRT 399 (413)
Q Consensus 371 --~~~~~~~~~~l~-~~~-dg~i~vw~~~~~~~ 399 (413)
+++|+|++++++ ++. |+.|++|++++...
T Consensus 263 ~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~ 295 (343)
T 3lrv_A 263 TVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTK 295 (343)
T ss_dssp CEEEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred ceEEEECCCCCEEEEecCCCCcEEEEEEccccc
Confidence 699999987775 555 99999999976543
No 107
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-31 Score=247.12 Aligned_cols=234 Identities=9% Similarity=0.104 Sum_probs=194.7
Q ss_pred ceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCc---EEEEeec------------------------------------
Q 040361 134 SQCFTTMQTPSENFLITCGNWENSFQVIALNDGR---VVQSIRQ------------------------------------ 174 (413)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~---~~~~~~~------------------------------------ 174 (413)
..+.++.++++|+++++ +. ++.|++||+.+|+ .+..+..
T Consensus 5 ~p~~~v~~s~dg~~l~~-~~-~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFA-II-KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp CCCCEEEECSSSSEEEE-EE-TTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred ccEEEEEecCCCCEEEE-Ee-CCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 44566779999995555 44 8899999999998 6655553
Q ss_pred ------------------CCCeEEEEEECCCCCEE-EEccCCCcEEEEEec--cccccccccccceeecCCCceeeecCc
Q 040361 175 ------------------HRDVVSCVAVTTDGSIL-ATGSYDTTVMVWEVI--RARAPEKRVRNMQIEAPRKDYVIVETP 233 (413)
Q Consensus 175 ------------------h~~~v~~~~~~~~~~~l-~s~s~dg~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (413)
|.+.|.+++|+|++++| ++|+.||.|++||+. ++. .
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~-----------------------~ 139 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKN-----------------------V 139 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSS-----------------------C
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCc-----------------------e
Confidence 33379999999999996 899999999999998 555 4
Q ss_pred eeeee--cCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEE----EEeCCCCCceeeEEEccC---CcEEEEECC
Q 040361 234 FHILC--GHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVR----SLCHPSGSALSKLAASRH---GRIVLYGDD 304 (413)
Q Consensus 234 ~~~~~--~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~----~~~~~~~~~v~~~~~~~~---~~~l~~~~~ 304 (413)
+..+. .|...|++++|+|++++|++|+.||.+++|++.++.... .+..+ ...|.+++|+|+ +++|++++.
T Consensus 140 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~sp~~~~~~~l~s~~~ 218 (450)
T 2vdu_B 140 LKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGH-VSMLTDVHLIKDSDGHQFIITSDR 218 (450)
T ss_dssp EEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEEC-SSCEEEEEEEECTTSCEEEEEEET
T ss_pred eeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecc-cCceEEEEEcCCCCCCcEEEEEcC
Confidence 45554 677899999999999999999999999999998876543 44444 458999999999 999999999
Q ss_pred CCeEEEEEeCC-ceeee--eecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecC-----------------
Q 040361 305 DLSLHLFSING-KHLAS--SESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSG----------------- 364 (413)
Q Consensus 305 d~~i~i~d~~~-~~~~~--~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~----------------- 364 (413)
|+.|++||++. ..+.. ..|...|.+++|+ ++++|++|+.|+.|++||+.+++.+..+..
T Consensus 219 d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (450)
T 2vdu_B 219 DEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPR 297 (450)
T ss_dssp TSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC---
T ss_pred CCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhccccccc
Confidence 99999999984 43433 3688999999999 999999999999999999999998877752
Q ss_pred --------CCCcEEEEEEccCCeEE-EEc-CCCeEEEEEe
Q 040361 365 --------VGKIITSLAVTPEECFL-AGT-KDGCLLVYSI 394 (413)
Q Consensus 365 --------~~~~v~~~~~~~~~~~l-~~~-~dg~i~vw~~ 394 (413)
....|.+++|+|++.++ +++ .|+.|++|++
T Consensus 298 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 298 FQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp -------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred ccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 23579999999998666 465 8999999999
No 108
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=2.7e-31 Score=242.90 Aligned_cols=283 Identities=14% Similarity=0.165 Sum_probs=211.2
Q ss_pred CeEEEEeecCCcEEEEecCceEEEEEe---------eccCCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceec
Q 040361 63 SGIVYVGMLDSSIVLVNQGLTLSVKMW---------LTTQLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELG 133 (413)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (413)
.++++++. ++.+++|+.......++. ...+|+|+|+++++|+.|+.+++|+.... ..+.....|.
T Consensus 116 ~n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~-----~~~~~~~~h~ 189 (420)
T 4gga_A 116 GNVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ-----KRLRNMTSHS 189 (420)
T ss_dssp TSEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTT-----EEEEEECCCS
T ss_pred CCEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCC-----cEEEEEeCCC
Confidence 46788876 789999997765544433 23468999999999999999999753221 1112222344
Q ss_pred ceeEEEEecCCCCEEEEeecCCCeEEEEEcCC-CcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccc
Q 040361 134 SQCFTTMQTPSENFLITCGNWENSFQVIALND-GRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPE 212 (413)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~ 212 (413)
..+.++.+ ++.. +++|+.|+.+++||... ...+..+.+|...+..+.|+|+++++++++.|+.+++|+..+++...
T Consensus 190 ~~v~~~s~--~~~~-l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~ 266 (420)
T 4gga_A 190 ARVGSLSW--NSYI-LSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGW 266 (420)
T ss_dssp SCEEEEEE--ETTE-EEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCS
T ss_pred CceEEEee--CCCE-EEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccc
Confidence 55555544 4444 55577799999999876 45667889999999999999999999999999999999998765221
Q ss_pred cccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCC-EEEE--eeCCCcEEEEEccCCeEEEEEeCCCCCceee
Q 040361 213 KRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELD-IVIS--GSKDGTCVFHTLREGRYVRSLCHPSGSALSK 289 (413)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~-~l~s--~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~ 289 (413)
. .+.....|...|.+++|+|.+. ++++ |+.|++|++||+.+++....+..+. .+.+
T Consensus 267 ~-------------------~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~--~v~~ 325 (420)
T 4gga_A 267 V-------------------PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS--QVCS 325 (420)
T ss_dssp C-------------------CSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSS--CEEE
T ss_pred e-------------------eeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecccc--ceee
Confidence 1 3556778999999999999665 4544 5689999999999999999887653 7899
Q ss_pred EEEccCCcEEEEEC--CCCeEEEEEeC-Cceeee-eecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCC
Q 040361 290 LAASRHGRIVLYGD--DDLSLHLFSIN-GKHLAS-SESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGV 365 (413)
Q Consensus 290 ~~~~~~~~~l~~~~--~d~~i~i~d~~-~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~ 365 (413)
+.|+++++.+++++ .|+.|++||+. ++.+.. ..|.+.|++++|+|+|++|++|+.||+|+|||+....+..+.+.+
T Consensus 326 ~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~ 405 (420)
T 4gga_A 326 ILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRRERE 405 (420)
T ss_dssp EEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC------
T ss_pred eeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhhc
Confidence 99999998887754 78999999998 444444 468999999999999999999999999999999887776666655
Q ss_pred CCcEEEEEEc
Q 040361 366 GKIITSLAVT 375 (413)
Q Consensus 366 ~~~v~~~~~~ 375 (413)
...+....+.
T Consensus 406 ~~~~~~~s~~ 415 (420)
T 4gga_A 406 KASAAKSSLI 415 (420)
T ss_dssp ----------
T ss_pred cCCccccccC
Confidence 5544443443
No 109
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=4.8e-32 Score=246.87 Aligned_cols=327 Identities=15% Similarity=0.150 Sum_probs=212.0
Q ss_pred EEecCCCC-CCeEEEEeecCCcEEEEecCceEEEE--------------------EeeccCCCC-CCceeeecCCCCccc
Q 040361 54 IICSTRHQ-PSGIVYVGMLDSSIVLVNQGLTLSVK--------------------MWLTTQLQS-GGNFTFSGSQDPFFG 111 (413)
Q Consensus 54 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~s~-~~~~l~~~~~d~~~~ 111 (413)
+.+..+.+ ++..++++..++.+.+|+........ ......|+| ++.++++++.|+.++
T Consensus 46 v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~ 125 (408)
T 4a11_B 46 INTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLK 125 (408)
T ss_dssp EEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEE
T ss_pred EEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEE
Confidence 35556777 88999999999999999965432111 112235788 778999999999999
Q ss_pred cCCCcCCCcccCCCCcccceecceeEEEEecCCCC--EEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCC
Q 040361 112 VGADILSPRNVGSPLAESFELGSQCFTTMQTPSEN--FLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGS 189 (413)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 189 (413)
+|+.... .....+.+...+..+.+.+.+. .++++|+.|+.|++||+.+++.+..+.+|...|.+++|+|+++
T Consensus 126 iwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 199 (408)
T 4a11_B 126 VWDTNTL------QTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYD 199 (408)
T ss_dssp EEETTTT------EEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCT
T ss_pred EeeCCCC------ccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCC
Confidence 9753211 1222334566677788887543 2445566699999999999999999999999999999999988
Q ss_pred -EEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEE
Q 040361 190 -ILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFH 268 (413)
Q Consensus 190 -~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vw 268 (413)
.|++|+.||.|++||+++.............. ...........|...|.+++|+|++++|++++.||.|++|
T Consensus 200 ~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 272 (408)
T 4a11_B 200 YILATASADSRVKLWDVRRASGCLITLDQHNGK-------KSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLW 272 (408)
T ss_dssp TEEEEEETTSCEEEEETTCSSCCSEECCTTTTC-------SCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred cEEEEEcCCCcEEEEECCCCCcccccccccccc-------cceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEE
Confidence 58999999999999998765222111000000 0001223346799999999999999999999999999999
Q ss_pred EccCCeEEEEEeCCC----CCceeeEEEccCCcEEEEECCCCeEEEEEeC-Cceeee-eecCCceeEEEecCCCCEEEEe
Q 040361 269 TLREGRYVRSLCHPS----GSALSKLAASRHGRIVLYGDDDLSLHLFSIN-GKHLAS-SESNGRLNCLELSACGQFLVCG 342 (413)
Q Consensus 269 d~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~-~~~~~~i~~~~~s~~~~~l~~~ 342 (413)
|+++++....+.... ...+........+..+++++.++.|++||+. +..+.. ..|...|.+++|+|++++|++|
T Consensus 273 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 352 (408)
T 4a11_B 273 NSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSG 352 (408)
T ss_dssp ETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEE
T ss_pred ECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEE
Confidence 999887654433211 1122222333345667777888999999998 444444 3588999999999999999999
Q ss_pred CCCCeEEEEECCCCceEEEecCCCCcEEEEEEccC--CeEEEEcCCCeEEEEEecC
Q 040361 343 GDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPE--ECFLAGTKDGCLLVYSIEN 396 (413)
Q Consensus 343 ~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~dg~i~vw~~~~ 396 (413)
+.||.|++||+.+++.+.....+... ..+.+. ..+.+.+.++.+++|+...
T Consensus 353 ~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 353 SRDCNILAWVPSLYEPVPDDDETTTK---SQLNPAFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp ETTSCEEEEEECC-------------------------------------------
T ss_pred CCCCeEEEEeCCCCCccCCCCceEec---cccccccceeecccCccCceeecCCcc
Confidence 99999999999998887655433221 233333 3344688899999998754
No 110
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=3.6e-30 Score=236.57 Aligned_cols=277 Identities=12% Similarity=0.071 Sum_probs=217.6
Q ss_pred cCCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEE
Q 040361 92 TQLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQS 171 (413)
Q Consensus 92 ~~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~ 171 (413)
..++|++.++++++.|+.+.+|+.................+...+..+.+++++..+++ ++.|+.|++||+.+++.+..
T Consensus 128 ~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s-~~~d~~v~~~d~~~~~~~~~ 206 (433)
T 3bws_A 128 VRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVS-QMQANAVHVFDLKTLAYKAT 206 (433)
T ss_dssp CEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEE-EGGGTEEEEEETTTCCEEEE
T ss_pred EEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEE-ECCCCEEEEEECCCceEEEE
Confidence 35789888899999999999975321111100111112234557788888777765555 55699999999999999999
Q ss_pred eecCCCeEEEEEECCCCCEEE-EccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEe
Q 040361 172 IRQHRDVVSCVAVTTDGSILA-TGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVS 250 (413)
Q Consensus 172 ~~~h~~~v~~~~~~~~~~~l~-s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~ 250 (413)
+..|...+.+++|+|++++++ +++.|+.|++||+.+++ .+..+.. ...+.+++|+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~-----------------------~~~~~~~-~~~~~~~~~~ 262 (433)
T 3bws_A 207 VDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKL-----------------------EIRKTDK-IGLPRGLLLS 262 (433)
T ss_dssp EECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTE-----------------------EEEECCC-CSEEEEEEEC
T ss_pred EcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCc-----------------------EEEEecC-CCCceEEEEc
Confidence 999999999999999999885 55589999999998776 3444443 4458999999
Q ss_pred cCCCEEEEee--------CCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcE-EEEECCCCeEEEEEeCC-ceeee
Q 040361 251 VELDIVISGS--------KDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRI-VLYGDDDLSLHLFSING-KHLAS 320 (413)
Q Consensus 251 ~~~~~l~s~~--------~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~i~d~~~-~~~~~ 320 (413)
|+++.+++++ .|+.|++||+++++.+..+... ..+..++|+|+++. +++++.++.|++||+++ +....
T Consensus 263 ~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~ 340 (433)
T 3bws_A 263 KDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPP--GNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKS 340 (433)
T ss_dssp TTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEE--ECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCC--CCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEE
Confidence 9999998888 5889999999999887776443 36889999999975 46668999999999984 44455
Q ss_pred eecCCceeEEEecCCCCEEEEeCC---------------CCeEEEEECCCCceEEEecCCCCcEEEEEEccCCeEE-EEc
Q 040361 321 SESNGRLNCLELSACGQFLVCGGD---------------QGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFL-AGT 384 (413)
Q Consensus 321 ~~~~~~i~~~~~s~~~~~l~~~~~---------------dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~ 384 (413)
..+...+.+++|+|+|+++++++. ||.|++||+.+++.+..+.. ...+.+++|+|+++++ +++
T Consensus 341 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~ 419 (433)
T 3bws_A 341 IPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISD 419 (433)
T ss_dssp EECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEE
T ss_pred ecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEE
Confidence 667788999999999998888766 57999999999999888875 4579999999998655 444
Q ss_pred -CCCeEEEEEecC
Q 040361 385 -KDGCLLVYSIEN 396 (413)
Q Consensus 385 -~dg~i~vw~~~~ 396 (413)
.|+.|++|+++.
T Consensus 420 ~~d~~i~v~~~~~ 432 (433)
T 3bws_A 420 FLDHQIRVYRRDG 432 (433)
T ss_dssp TTTTEEEEEEETT
T ss_pred CCCCeEEEEEecC
Confidence 599999999864
No 111
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=5.2e-31 Score=242.25 Aligned_cols=230 Identities=16% Similarity=0.321 Sum_probs=196.4
Q ss_pred cceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccc
Q 040361 133 GSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPE 212 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~ 212 (413)
...+.++.+ +++.+++ |+.||.|++||+.+++....+.+|.+.|.+++| ++++|++|+.||.|++||+.+++
T Consensus 133 ~~~v~~~~~--d~~~l~~-g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~--- 204 (435)
T 1p22_A 133 SKGVYCLQY--DDQKIVS-GLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGE--- 204 (435)
T ss_dssp CCCEEEEEC--CSSEEEE-EESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCC---
T ss_pred CCcEEEEEE--CCCEEEE-EeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCc---
Confidence 344555544 6776666 556999999999999999999999999999999 78899999999999999998887
Q ss_pred cccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEE---EEEeCCCCCceee
Q 040361 213 KRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYV---RSLCHPSGSALSK 289 (413)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~---~~~~~~~~~~v~~ 289 (413)
.+..+.+|...|.+++|++ +.+++|+.||.|++||++++... ..+..+ ...|.+
T Consensus 205 --------------------~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-~~~v~~ 261 (435)
T 1p22_A 205 --------------------MLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGH-RAAVNV 261 (435)
T ss_dssp --------------------EEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCC-SSCEEE
T ss_pred --------------------EEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCC-CCcEEE
Confidence 6778889999999999974 59999999999999999887654 344443 568888
Q ss_pred EEEccCCcEEEEECCCCeEEEEEeCC-ceeee-eecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCC
Q 040361 290 LAASRHGRIVLYGDDDLSLHLFSING-KHLAS-SESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGK 367 (413)
Q Consensus 290 ~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~ 367 (413)
+++ +++++++++.|+.|++||++. +.+.. ..+...+.++++ +++++++|+.||.|++||+++++.+..+.+|..
T Consensus 262 ~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~ 337 (435)
T 1p22_A 262 VDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE 337 (435)
T ss_dssp EEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSS
T ss_pred EEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcC
Confidence 888 788999999999999999984 44433 357888999998 578999999999999999999999999999999
Q ss_pred cEEEEEEccCCeEEEEcCCCeEEEEEecCCc
Q 040361 368 IITSLAVTPEECFLAGTKDGCLLVYSIENRR 398 (413)
Q Consensus 368 ~v~~~~~~~~~~~l~~~~dg~i~vw~~~~~~ 398 (413)
.|.+++|. ...+++|+.||.|++||+.+++
T Consensus 338 ~v~~~~~~-~~~l~sg~~dg~i~vwd~~~~~ 367 (435)
T 1p22_A 338 LVRCIRFD-NKRIVSGAYDGKIKVWDLVAAL 367 (435)
T ss_dssp CEEEEECC-SSEEEEEETTSCEEEEEHHHHT
T ss_pred cEEEEEec-CCEEEEEeCCCcEEEEECCCCC
Confidence 99999993 3456679999999999998765
No 112
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-32 Score=242.16 Aligned_cols=266 Identities=8% Similarity=0.017 Sum_probs=195.1
Q ss_pred CCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcC--------
Q 040361 93 QLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALN-------- 164 (413)
Q Consensus 93 ~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~-------- 164 (413)
.+.+++.++++|+.|+.+++|+..... . ...+. ...+.++.++|. +++|+.|+.|++|+..
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~-----~-~~~~~-~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~~~~~ 111 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSK-----T-ITTIT-TPNPRTGGEHPA----IISRGPCNRLLLLYPGNQITILDS 111 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSS-----C-EEEEE-EECCCTTCCCCS----EEEECSTTEEEEEETTTEEEEEET
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCc-----E-EEEEe-cCCceeeeeCCc----eEEecCCCeEEEEEccCceEEeec
Confidence 456778889999999999997532111 0 01111 233445556666 5556679999999654
Q ss_pred -CCcEEEEee-cCCCeEEEEEECC--CCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeee-ec
Q 040361 165 -DGRVVQSIR-QHRDVVSCVAVTT--DGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHIL-CG 239 (413)
Q Consensus 165 -~~~~~~~~~-~h~~~v~~~~~~~--~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 239 (413)
+++.+..+. +|.+.|.+++|+| ++++|++|+.||+|++||+++++ ..... ..
T Consensus 112 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~-----------------------~~~~~~~~ 168 (343)
T 3lrv_A 112 KTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDS-----------------------QYIVHSAK 168 (343)
T ss_dssp TTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSC-----------------------EEEEECCC
T ss_pred CCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCc-----------------------EEEEEecC
Confidence 566555554 6788999999999 99999999999999999998876 33333 34
Q ss_pred CCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEE-EEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCcee
Q 040361 240 HDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYV-RSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKHL 318 (413)
Q Consensus 240 h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 318 (413)
|...|++++|+|++.++++|+.||.|++||+++++.+ ..+...+...|.+++|+|++.+|++++. +.|++||++....
T Consensus 169 ~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~-~~v~iwd~~~~~~ 247 (343)
T 3lrv_A 169 SDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECD-QTVVCFDLRKDVG 247 (343)
T ss_dssp SSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEES-SBEEEEETTSSTT
T ss_pred CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeC-CeEEEEEcCCCCc
Confidence 5568999999999999999999999999999999887 7777634579999999999999999994 4999999984322
Q ss_pred -eeee----cCCce--eEEEecCCCCEEEEeCC-CCeEEEEECCCCceEEEecCCCCcEEEEEEcc---CC-eEEEEcCC
Q 040361 319 -ASSE----SNGRL--NCLELSACGQFLVCGGD-QGQIVVRSMNSLEVVRRYSGVGKIITSLAVTP---EE-CFLAGTKD 386 (413)
Q Consensus 319 -~~~~----~~~~i--~~~~~s~~~~~l~~~~~-dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~---~~-~~l~~~~d 386 (413)
.... +...+ .+++|+|+|++|++++. |+.|++|++......... .++..+.|.+ +. .+++++.|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d 323 (343)
T 3lrv_A 248 TLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGD 323 (343)
T ss_dssp CBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEET
T ss_pred ceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecC
Confidence 2111 22333 46999999999999888 999999999765443332 4677788887 64 45568888
Q ss_pred CeEEEEEecCC
Q 040361 387 GCLLVYSIENR 397 (413)
Q Consensus 387 g~i~vw~~~~~ 397 (413)
|.+.++-....
T Consensus 324 ~~~~~~~~~~~ 334 (343)
T 3lrv_A 324 GGIAAILKTND 334 (343)
T ss_dssp TEEEEEEECSS
T ss_pred CceEEEEecCC
Confidence 88888765443
No 113
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-31 Score=238.61 Aligned_cols=212 Identities=18% Similarity=0.261 Sum_probs=180.4
Q ss_pred CcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeE
Q 040361 166 GRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIIT 245 (413)
Q Consensus 166 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 245 (413)
|+++..+.+|.+.|++++|+|++++|++|+.||.|++||+..... ..+..+.+|...|+
T Consensus 1 G~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~---------------------~~~~~~~~h~~~v~ 59 (379)
T 3jrp_A 1 GSMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH---------------------KLIDTLTGHEGPVW 59 (379)
T ss_dssp ----CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE---------------------EEEEEECCCSSCEE
T ss_pred CCccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcc---------------------eeeeEecCCCCcEE
Confidence 355677889999999999999999999999999999999973320 15677889999999
Q ss_pred EEEEecC--CCEEEEeeCCCcEEEEEccCCe--EEEEEeCCCCCceeeEEEccC--CcEEEEECCCCeEEEEEeCCc---
Q 040361 246 CLYVSVE--LDIVISGSKDGTCVFHTLREGR--YVRSLCHPSGSALSKLAASRH--GRIVLYGDDDLSLHLFSINGK--- 316 (413)
Q Consensus 246 ~~~~~~~--~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~--- 316 (413)
+++|+++ +++|++++.||.|++||+.+++ .+..+..+ ...|.+++|+|+ +.++++++.|+.|++||++..
T Consensus 60 ~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~ 138 (379)
T 3jrp_A 60 RVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVH-SASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT 138 (379)
T ss_dssp EEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCC-SSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCC
T ss_pred EEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCC-CcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCce
Confidence 9999977 8999999999999999999987 55555544 568999999999 999999999999999999843
Q ss_pred -eeeeeecCCceeEEEecC-------------CCCEEEEeCCCCeEEEEECCCCc----eEEEecCCCCcEEEEEEccC-
Q 040361 317 -HLASSESNGRLNCLELSA-------------CGQFLVCGGDQGQIVVRSMNSLE----VVRRYSGVGKIITSLAVTPE- 377 (413)
Q Consensus 317 -~~~~~~~~~~i~~~~~s~-------------~~~~l~~~~~dg~i~v~d~~~~~----~~~~~~~~~~~v~~~~~~~~- 377 (413)
......+...+.+++|+| ++.++++|+.||.|++||+++++ ....+.+|...|.+++|+|+
T Consensus 139 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~ 218 (379)
T 3jrp_A 139 SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV 218 (379)
T ss_dssp CEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCC
T ss_pred eeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCC
Confidence 222346888999999999 69999999999999999998764 44677889999999999999
Q ss_pred --CeEE-EEcCCCeEEEEEecCCcc
Q 040361 378 --ECFL-AGTKDGCLLVYSIENRRT 399 (413)
Q Consensus 378 --~~~l-~~~~dg~i~vw~~~~~~~ 399 (413)
+.++ +++.||.|++||+.+++.
T Consensus 219 ~~~~~l~s~~~dg~i~iwd~~~~~~ 243 (379)
T 3jrp_A 219 LLRSYLASVSQDRTCIIWTQDNEQG 243 (379)
T ss_dssp SSSEEEEEEETTSCEEEEEESSTTS
T ss_pred CCCCeEEEEeCCCEEEEEeCCCCCc
Confidence 7766 599999999999998753
No 114
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=7.3e-31 Score=224.31 Aligned_cols=236 Identities=13% Similarity=0.092 Sum_probs=166.2
Q ss_pred EEEeecCCCeEEEEEcCCC---cEEEEeecCCC-------------------------eEEEEEECCC----CCEEEEcc
Q 040361 148 LITCGNWENSFQVIALNDG---RVVQSIRQHRD-------------------------VVSCVAVTTD----GSILATGS 195 (413)
Q Consensus 148 l~~~g~~d~~i~i~~~~~~---~~~~~~~~h~~-------------------------~v~~~~~~~~----~~~l~s~s 195 (413)
.+++++ ...|++|+..++ +.++++..|.. .|..++++|| ++.+++++
T Consensus 56 ~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g 134 (356)
T 2w18_A 56 CIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSG 134 (356)
T ss_dssp EEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEE
T ss_pred EEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCC
Confidence 344444 889999999988 77788877764 5667777777 77788766
Q ss_pred CCCcEEEEEecccccc-------ccccccceeecCCCceeeecCceeeeecCCCCeEEEEEec---CCCEEEEeeCCCcE
Q 040361 196 YDTTVMVWEVIRARAP-------EKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSV---ELDIVISGSKDGTC 265 (413)
Q Consensus 196 ~dg~i~iw~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~---~~~~l~s~~~dg~i 265 (413)
.+ +.+|++.+++.. .+.++.+.+. +. .+.+..+.+|...++.++|++ ++.+|++++.|++|
T Consensus 135 ~~--~~v~~l~~g~lv~ss~~g~d~~V~~~~~s-~d------G~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TI 205 (356)
T 2w18_A 135 NI--KAVLGLTKRRLVSSSGTLSDQQVEVMTFA-ED------GGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNI 205 (356)
T ss_dssp EE--EEEEEETTTEEEEEESSSTTCEEEEEEEC-TT------SCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEE
T ss_pred Ce--EEEEecCCCcEEEecccCCCCcEEEEEEC-CC------CceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcE
Confidence 42 555555443310 0011111110 00 124566778999999999999 77999999999999
Q ss_pred EEEEccCCeEEEEEeCCCC--CceeeEEEccCCcEE------------EEECCCCeEEEEEeCCceee-ee------ecC
Q 040361 266 VFHTLREGRYVRSLCHPSG--SALSKLAASRHGRIV------------LYGDDDLSLHLFSINGKHLA-SS------ESN 324 (413)
Q Consensus 266 ~vwd~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l------------~~~~~d~~i~i~d~~~~~~~-~~------~~~ 324 (413)
++||+.++++++++..++. ..+.+++|+|++.++ ++|+.|++|++||..+.... .. ++.
T Consensus 206 kIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~ 285 (356)
T 2w18_A 206 VIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQA 285 (356)
T ss_dssp EEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCC
T ss_pred EEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCc
Confidence 9999999999999975432 357778999999887 55778999999999854432 21 223
Q ss_pred CceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEE-EEEEccCCeEE-EEcCCCeEEEEEec
Q 040361 325 GRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIIT-SLAVTPEECFL-AGTKDGCLLVYSIE 395 (413)
Q Consensus 325 ~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l-~~~~dg~i~vw~~~ 395 (413)
..+.+..+ ++.++++|+.|++|+|||+.+++++.++.+|...+. +++|+|||++| +|+.|++|++||+.
T Consensus 286 ~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~~ 356 (356)
T 2w18_A 286 GRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHYS 356 (356)
T ss_dssp CCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEEC
T ss_pred ceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecCC
Confidence 33333333 477899999999999999999999999999987655 58999998766 69999999999963
No 115
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=1.5e-29 Score=229.26 Aligned_cols=304 Identities=11% Similarity=0.050 Sum_probs=235.0
Q ss_pred eEEEEeecCCcEEEEecCceEEEEEee------ccCCCCCCcee-eecCCCCccccCCCcCCCcccCCCCcccceeccee
Q 040361 64 GIVYVGMLDSSIVLVNQGLTLSVKMWL------TTQLQSGGNFT-FSGSQDPFFGVGADILSPRNVGSPLAESFELGSQC 136 (413)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~s~~~~~l-~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (413)
-++.++..++.+.+|+.......+... ...++|+|+++ ++++.|+.+++|+... ......+..+..+
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~------~~~~~~~~~~~~v 76 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTAT------NNVIATVPAGSSP 76 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTT------TEEEEEEECSSSE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCC------CeEEEEEECCCCc
Confidence 356667788999999977655544432 33689999877 6777999999974321 1122334445688
Q ss_pred EEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEE-EEccCCCcEEEEEecccccccccc
Q 040361 137 FTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSIL-ATGSYDTTVMVWEVIRARAPEKRV 215 (413)
Q Consensus 137 ~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~s~dg~i~iw~~~~~~~~~~~~ 215 (413)
..+.|+|+++++++++..++.|++||+.+++.+..+..| ..+.+++|+|++++| ++++.|+.|++||+.+++
T Consensus 77 ~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~------ 149 (391)
T 1l0q_A 77 QGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKA------ 149 (391)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE------
T ss_pred cceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCc------
Confidence 899999999999988887899999999999998888755 468999999999987 788889999999998776
Q ss_pred ccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEE-EEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEcc
Q 040361 216 RNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIV-ISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASR 294 (413)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~ 294 (413)
.+..+..+ ..+.+++|+|+++.+ ++++.++.|++||+++++....+... ..+.+++|+|
T Consensus 150 -----------------~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~~~ 209 (391)
T 1l0q_A 150 -----------------VINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE--AAPSGIAVNP 209 (391)
T ss_dssp -----------------EEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS--SEEEEEEECT
T ss_pred -----------------EEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecC--CCccceEECC
Confidence 44555544 456999999999877 67788999999999999988877653 4789999999
Q ss_pred CCcEEEEEC---CCCeEEEEEeCC-ceeeeeecCCceeEEEecCCCCEE-EEeCCCCeEEEEECCCCceEEEecCCCCcE
Q 040361 295 HGRIVLYGD---DDLSLHLFSING-KHLASSESNGRLNCLELSACGQFL-VCGGDQGQIVVRSMNSLEVVRRYSGVGKII 369 (413)
Q Consensus 295 ~~~~l~~~~---~d~~i~i~d~~~-~~~~~~~~~~~i~~~~~s~~~~~l-~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v 369 (413)
+++++++++ .++.|++||++. +.+........+.+++|+|+++++ ++++.|+.|++||+.+++.+..+..+..+.
T Consensus 210 ~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~ 289 (391)
T 1l0q_A 210 EGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPY 289 (391)
T ss_dssp TSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEE
T ss_pred CCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCC
Confidence 999998887 689999999984 444445555678999999999977 567889999999999999988887665432
Q ss_pred E---EEEEc------------cC--------C--e-EEEEcCCCeEEEEEecCCccc
Q 040361 370 T---SLAVT------------PE--------E--C-FLAGTKDGCLLVYSIENRRTS 400 (413)
Q Consensus 370 ~---~~~~~------------~~--------~--~-~l~~~~dg~i~vw~~~~~~~~ 400 (413)
. .+.+. .+ . . +...+.|..+++|++.++...
T Consensus 290 ~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~ 346 (391)
T 1l0q_A 290 ASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSS 346 (391)
T ss_dssp CCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEE
T ss_pred ccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCccc
Confidence 1 12222 21 1 2 333667889999999887643
No 116
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=8.4e-31 Score=233.93 Aligned_cols=268 Identities=9% Similarity=0.031 Sum_probs=197.3
Q ss_pred cCCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEE
Q 040361 92 TQLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQS 171 (413)
Q Consensus 92 ~~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~ 171 (413)
.+|+|||.++++|+.++ +++|+.. +. ..... .....+..+.+.++++.++++|+.|+.|++||..+++.+..
T Consensus 25 v~fs~dg~~la~g~~~~-~~iw~~~--~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~ 96 (355)
T 3vu4_A 25 YEFNQDQSCLILSTLKS-FEIYNVH--PV--AHIMS---QEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSR 96 (355)
T ss_dssp EEECTTSSEEEEECSSE-EEEEEET--TE--EEEEE---EECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEE
T ss_pred EEECCCCCEEEEEcCCE-EEEEecC--Cc--ceeee---eecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEE
Confidence 45788999988888776 4675321 11 00000 11123555677888888888788799999999999999998
Q ss_pred eecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccc-cccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEe
Q 040361 172 IRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRA-RAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVS 250 (413)
Q Consensus 172 ~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~ 250 (413)
+. |...|.+++|+++. ++++ .|+.|++||+.+. + .+..+.. +...++++
T Consensus 97 ~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~-----------------------~~~~~~~---~~~~~~~s 146 (355)
T 3vu4_A 97 IK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWK-----------------------RITDDIR---FGGVCEFS 146 (355)
T ss_dssp EE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCC-----------------------BSSCCEE---EEEEEEEE
T ss_pred EE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCce-----------------------eeEEecc---CCceEEEE
Confidence 87 67799999998764 4443 4789999999877 3 2233333 33445666
Q ss_pred cCCCEEEE--eeCCCcEEEEEccCCe----------------EEEEEeCCCCCceeeEEEccCCcEEEEECCCCe-EEEE
Q 040361 251 VELDIVIS--GSKDGTCVFHTLREGR----------------YVRSLCHPSGSALSKLAASRHGRIVLYGDDDLS-LHLF 311 (413)
Q Consensus 251 ~~~~~l~s--~~~dg~i~vwd~~~~~----------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~i~ 311 (413)
+ .+++. |+.||.|++||++++. .+..+..| ...|.+++|+|++++|++++.|++ |++|
T Consensus 147 ~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h-~~~v~~~~~s~~g~~l~s~s~d~~~v~iw 223 (355)
T 3vu4_A 147 N--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAH-TNPIKMVRLNRKSDMVATCSQDGTIIRVF 223 (355)
T ss_dssp T--TEEEEEESSCTTCEEEEECCC------------------CCEEECCC-SSCEEEEEECTTSSEEEEEETTCSEEEEE
T ss_pred c--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEcc-CCceEEEEECCCCCEEEEEeCCCCEEEEE
Confidence 6 55655 6899999999998765 15566655 568999999999999999999998 9999
Q ss_pred EeC-Cceeeeee---cCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceE--EEe--------------------c-C
Q 040361 312 SIN-GKHLASSE---SNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVV--RRY--------------------S-G 364 (413)
Q Consensus 312 d~~-~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~--~~~--------------------~-~ 364 (413)
|++ ++.+.... |...|.+++|+|++++|++++.|+.|++||+...... ..+ . .
T Consensus 224 d~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (355)
T 3vu4_A 224 KTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVD 303 (355)
T ss_dssp ETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCC
T ss_pred ECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccC
Confidence 998 55555554 8899999999999999999999999999999764311 111 1 1
Q ss_pred CCCcEEEEEEccCCeEE-EEcCCCeEEEEEecCCccc
Q 040361 365 VGKIITSLAVTPEECFL-AGTKDGCLLVYSIENRRTS 400 (413)
Q Consensus 365 ~~~~v~~~~~~~~~~~l-~~~~dg~i~vw~~~~~~~~ 400 (413)
.......++|++++.++ +++.||.+++|++..++..
T Consensus 304 ~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~~~ 340 (355)
T 3vu4_A 304 KHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDDEM 340 (355)
T ss_dssp TTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEETTT
T ss_pred CCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCCCC
Confidence 12234678999998655 6999999999999876543
No 117
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.8e-31 Score=239.85 Aligned_cols=285 Identities=10% Similarity=0.091 Sum_probs=206.7
Q ss_pred EecCCCCCCeEEEEeecCCcEEEEecCceEEEE----EeeccCCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccc
Q 040361 55 ICSTRHQPSGIVYVGMLDSSIVLVNQGLTLSVK----MWLTTQLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESF 130 (413)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 130 (413)
.+..++|++.++++++.|+.+. +......++ -.-..+|+|+| .++.+.+|. .. ......+
T Consensus 19 ~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~----~~---~~~~~~~ 82 (588)
T 2j04_A 19 NNLTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLE-------FENKLDFEL----AQ---QNGLLNS 82 (588)
T ss_dssp CCEEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCC-------CCCTTTTSC----CC---SSCSSTT
T ss_pred EEEEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCC-------CcceEEEEe----CC---CceEeec
Confidence 3445678888888888887776 322111110 00123467777 566666642 21 1111122
Q ss_pred eecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCC-----eEEEEEECCCCCEEEEccCCCcEEEEEe
Q 040361 131 ELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRD-----VVSCVAVTTDGSILATGSYDTTVMVWEV 205 (413)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~s~s~dg~i~iw~~ 205 (413)
.+...+.+++|+|+|..+++++ .||.|++||.+. ++..+. |.. .|.+++|+|||++|++|+.||+|++||+
T Consensus 83 ~~~~~V~~vawSPdG~~LAs~s-~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~ 158 (588)
T 2j04_A 83 QPVCYPRVCKPSPIDDWMAVLS-NNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSI 158 (588)
T ss_dssp SCSCCEEEEEECSSSSCEEEEE-TTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEEC
T ss_pred CCCCcEEEEEECCCCCEEEEEe-CCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEEC
Confidence 3367899999999999998855 499999999644 667777 665 5999999999999999999999999999
Q ss_pred ccccccccccccceeecCCCceeeecCceeee----ecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeE---EEE
Q 040361 206 IRARAPEKRVRNMQIEAPRKDYVIVETPFHIL----CGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRY---VRS 278 (413)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~---~~~ 278 (413)
.++....... ..+..+ .+|...|.+++|+|++ +++++.|+.|++||+..+.. .++
T Consensus 159 ~~~~l~~~~~----------------i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~t 220 (588)
T 2j04_A 159 RKNSENTPEF----------------YFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRM 220 (588)
T ss_dssp CCCTTTCCCC----------------EEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEE
T ss_pred CCCccccccc----------------eeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceee
Confidence 8764100000 013444 6788899999999998 88889999999999987773 345
Q ss_pred EeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCcee-eee-ecCCceeEEEe--cCCCCEEEEeCCCCeEEEEECC
Q 040361 279 LCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKHL-ASS-ESNGRLNCLEL--SACGQFLVCGGDQGQIVVRSMN 354 (413)
Q Consensus 279 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~-~~~~~i~~~~~--s~~~~~l~~~~~dg~i~v~d~~ 354 (413)
+...+...|.+++|+ +..+++++ +++|++||+.+... ... +|...+..++| +|++..+++++++|. ++|...
T Consensus 221 L~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 221 IQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp EECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred ecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 643445689999999 68888887 69999999996665 333 78899999999 999999999999999 999874
Q ss_pred C-----------------------CceEEEecCCCCcEEEEEEccCCeEEE
Q 040361 355 S-----------------------LEVVRRYSGVGKIITSLAVTPEECFLA 382 (413)
Q Consensus 355 ~-----------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~ 382 (413)
. +..+..+.+ ...|.+++|+|||+++|
T Consensus 297 ~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~-~~~I~~va~SPdG~~lA 346 (588)
T 2j04_A 297 ELHVTADNIIAPYLEKKFKKWSTIWNEFNNYET-TLVIHGISLSPDGYSIA 346 (588)
T ss_dssp SEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCC-EEEEEEEEECTTSSEEE
T ss_pred cEEECCCceEEEEcCCEEEEEECCCCceeeecc-ceEEEEEEECCCCCEEE
Confidence 2 111122222 34589999999998776
No 118
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=3.1e-31 Score=236.05 Aligned_cols=257 Identities=12% Similarity=0.128 Sum_probs=195.2
Q ss_pred CCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCC--CCEEEEeecCCCeEEEEEcCCC----
Q 040361 93 QLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPS--ENFLITCGNWENSFQVIALNDG---- 166 (413)
Q Consensus 93 ~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~g~~d~~i~i~~~~~~---- 166 (413)
.|+|+++++++++.|+.+++|+....... .........+...+.++.|+|. ++.+++ |+.||.|++||+.++
T Consensus 18 ~~~~~~~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s-~~~dg~v~vwd~~~~~~~~ 95 (351)
T 3f3f_A 18 VYDFYGRHVATCSSDQHIKVFKLDKDTSN-WELSDSWRAHDSSIVAIDWASPEYGRIIAS-ASYDKTVKLWEEDPDQEEC 95 (351)
T ss_dssp EECSSSSEEEEEETTSEEEEEEECSSSCC-EEEEEEEECCSSCEEEEEECCGGGCSEEEE-EETTSCEEEEEECTTSCTT
T ss_pred EEcCCCCEEEEeeCCCeEEEEECCCCCCc-ceecceeccCCCcEEEEEEcCCCCCCEEEE-EcCCCeEEEEecCCCcccc
Confidence 46888899999999999998643211110 0111112235678899999994 666666 555999999999887
Q ss_pred -----cEEEEeecCCCeEEEEEECCC--CCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeec
Q 040361 167 -----RVVQSIRQHRDVVSCVAVTTD--GSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCG 239 (413)
Q Consensus 167 -----~~~~~~~~h~~~v~~~~~~~~--~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (413)
+.+..+..|...|.+++|+|+ +++|++++.||.|++||+.+++........... .........
T Consensus 96 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~----------~~~~~~~~~ 165 (351)
T 3f3f_A 96 SGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEM----------KVLSIPPAN 165 (351)
T ss_dssp SSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEE----------ESCSCCCSS
T ss_pred cccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccc----------cccccccCC
Confidence 567888899999999999999 999999999999999999887632211000000 001112236
Q ss_pred CCCCeEEEEEecC---CCEEEEeeCCCcEEEEEccCCeE--EEEEeCCCCCceeeEEEccCC----cEEEEECCCCeEEE
Q 040361 240 HDDIITCLYVSVE---LDIVISGSKDGTCVFHTLREGRY--VRSLCHPSGSALSKLAASRHG----RIVLYGDDDLSLHL 310 (413)
Q Consensus 240 h~~~i~~~~~~~~---~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~d~~i~i 310 (413)
|...+.+++|+|+ +..+++++.|+.+.+|+...++. +..+..+ ...|.+++|+|++ ++|++++.|+.|++
T Consensus 166 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~i 244 (351)
T 3f3f_A 166 HLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGH-KSLIRSISWAPSIGRWYQLIATGCKDGRIRI 244 (351)
T ss_dssp CSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCC-CSCEEEEEECCCSSCSSEEEEEEETTSCEEE
T ss_pred cccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCC-CcceeEEEECCCCCCcceEEEEEcCCCeEEE
Confidence 8889999999997 89999999999998888877765 4445444 5689999999998 89999999999999
Q ss_pred EEeCCc-----------------------------------------------eeee-eecCCceeEEEecCCCCEEEEe
Q 040361 311 FSINGK-----------------------------------------------HLAS-SESNGRLNCLELSACGQFLVCG 342 (413)
Q Consensus 311 ~d~~~~-----------------------------------------------~~~~-~~~~~~i~~~~~s~~~~~l~~~ 342 (413)
||++.. .+.. ..|...|++++|+|++++|++|
T Consensus 245 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~ 324 (351)
T 3f3f_A 245 FKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSA 324 (351)
T ss_dssp EEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEE
T ss_pred EeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEe
Confidence 999742 2222 2477899999999999999999
Q ss_pred CCCCeEEEEECCCCceEEEe
Q 040361 343 GDQGQIVVRSMNSLEVVRRY 362 (413)
Q Consensus 343 ~~dg~i~v~d~~~~~~~~~~ 362 (413)
+.||.|++||+.+++.+..+
T Consensus 325 ~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 325 GDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp ETTSCEEEEEECTTSCEEEE
T ss_pred cCCCcEEEEecCcCcchhhe
Confidence 99999999999987665544
No 119
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.98 E-value=2.1e-29 Score=231.53 Aligned_cols=244 Identities=14% Similarity=0.118 Sum_probs=203.1
Q ss_pred ceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEE-----EeecCCCeEEEEEECCCCCEEEEccCCCcEEEEE
Q 040361 130 FELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQ-----SIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWE 204 (413)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~-----~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~ 204 (413)
+..+..+.++.++| +..+++++..++.|++||+.+++... .+.+|.+.|.+++|+++++++++++.|+.|++||
T Consensus 119 ~~~~~~~~~~~~s~-~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d 197 (433)
T 3bws_A 119 FKTGFQPKSVRFID-NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFD 197 (433)
T ss_dssp EECSSCBCCCEESS-SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEE
T ss_pred EcCCCCceEEEEeC-CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEE
Confidence 33455566788899 66777777778999999999999887 3457899999999999999999999999999999
Q ss_pred eccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEE-EeeCCCcEEEEEccCCeEEEEEeCCC
Q 040361 205 VIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVI-SGSKDGTCVFHTLREGRYVRSLCHPS 283 (413)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~ 283 (413)
+++++ .+..+..|...+.+++|+|+++.++ +++.|+.|++||+++++.+..+..+
T Consensus 198 ~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~- 253 (433)
T 3bws_A 198 LKTLA-----------------------YKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI- 253 (433)
T ss_dssp TTTCC-----------------------EEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-
T ss_pred CCCce-----------------------EEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-
Confidence 98776 5667778999999999999999775 5558999999999999988877653
Q ss_pred CCceeeEEEccCCcEEEEEC--------CCCeEEEEEeCC-ceeeeeecCCceeEEEecCCCCEE-EEeCCCCeEEEEEC
Q 040361 284 GSALSKLAASRHGRIVLYGD--------DDLSLHLFSING-KHLASSESNGRLNCLELSACGQFL-VCGGDQGQIVVRSM 353 (413)
Q Consensus 284 ~~~v~~~~~~~~~~~l~~~~--------~d~~i~i~d~~~-~~~~~~~~~~~i~~~~~s~~~~~l-~~~~~dg~i~v~d~ 353 (413)
..+..++++|+++.+++++ .|+.|++||++. +......+...+.+++|+|+++.+ ++++.++.|++||+
T Consensus 254 -~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~ 332 (433)
T 3bws_A 254 -GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDL 332 (433)
T ss_dssp -SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEET
T ss_pred -CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEEC
Confidence 3689999999999998887 588999999984 444445566688999999999755 66689999999999
Q ss_pred CCCceEEEecCCCCcEEEEEEccCCeEE-EEcC---------------CCeEEEEEecCCccc
Q 040361 354 NSLEVVRRYSGVGKIITSLAVTPEECFL-AGTK---------------DGCLLVYSIENRRTS 400 (413)
Q Consensus 354 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~---------------dg~i~vw~~~~~~~~ 400 (413)
.+++.+..+. +...+.+++|+|++.++ +++. ||.|++||+.+++..
T Consensus 333 ~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~ 394 (433)
T 3bws_A 333 KEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVK 394 (433)
T ss_dssp TTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEE
T ss_pred CCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEE
Confidence 9998888776 67789999999998644 4443 579999999887644
No 120
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=5.7e-29 Score=218.76 Aligned_cols=243 Identities=16% Similarity=0.244 Sum_probs=195.5
Q ss_pred EEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEee--cCCCeEEEEEECCCCCEEEEccCCCcEEEEEecccccccccc
Q 040361 138 TTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIR--QHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRV 215 (413)
Q Consensus 138 ~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~ 215 (413)
.+.|++++ ++++|. |++|+|||+.++++++.++ +|...|++++|+|++++|++|+.||+|++|++++++
T Consensus 30 ~l~WS~~~--~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~------ 100 (318)
T 4ggc_A 30 LVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK------ 100 (318)
T ss_dssp CEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTE------
T ss_pred EEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCce------
Confidence 36688765 555566 9999999999999988775 578889999999999999999999999999999887
Q ss_pred ccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeE-EEEEeCCCCCceeeEEEcc
Q 040361 216 RNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRY-VRSLCHPSGSALSKLAASR 294 (413)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~~v~~~~~~~ 294 (413)
.+..+.+|...+.++.+ ++..+++++.++.+++|+...... +..+..+ ...+..+.+.+
T Consensus 101 -----------------~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 160 (318)
T 4ggc_A 101 -----------------RLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGH-SQEVCGLRWAP 160 (318)
T ss_dssp -----------------EEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECC-SSCEEEEEECT
T ss_pred -----------------eEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCc-cCceEEEEEcC
Confidence 67888999998877655 567999999999999999887654 4445544 56899999999
Q ss_pred CCcEEEEECCCCeEEEEEeCCce------eeeeecCCceeEEEecCCCCE---EEEeCCCCeEEEEECCCCceEEEecCC
Q 040361 295 HGRIVLYGDDDLSLHLFSINGKH------LASSESNGRLNCLELSACGQF---LVCGGDQGQIVVRSMNSLEVVRRYSGV 365 (413)
Q Consensus 295 ~~~~l~~~~~d~~i~i~d~~~~~------~~~~~~~~~i~~~~~s~~~~~---l~~~~~dg~i~v~d~~~~~~~~~~~~~ 365 (413)
+++++++++.|+.|++||++... .....+.+.+.+++++|++.. +++++.++.|++||........... +
T Consensus 161 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~ 239 (318)
T 4ggc_A 161 DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-A 239 (318)
T ss_dssp TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-C
T ss_pred CCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-c
Confidence 99999999999999999997322 222456788999999998653 3467889999999999887776654 6
Q ss_pred CCcEEEEEEccCCe-EEE--EcCCCeEEEEEecCCcccccccccccCCc
Q 040361 366 GKIITSLAVTPEEC-FLA--GTKDGCLLVYSIENRRTSLPRNVKSKASI 411 (413)
Q Consensus 366 ~~~v~~~~~~~~~~-~l~--~~~dg~i~vw~~~~~~~~~~~~~~~~~~i 411 (413)
...+..+.|+|++. +++ |+.|+.|++||+.+++...... .|...|
T Consensus 240 ~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~-gH~~~V 287 (318)
T 4ggc_A 240 HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK-GHTSRV 287 (318)
T ss_dssp SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC-CCSSCE
T ss_pred eeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEc-CCCCCE
Confidence 77899999999954 444 4589999999999886553322 455444
No 121
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=1.4e-29 Score=225.94 Aligned_cols=232 Identities=12% Similarity=0.146 Sum_probs=182.7
Q ss_pred ceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEE-EEccCCCcEEEEEeccc
Q 040361 130 FELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSIL-ATGSYDTTVMVWEVIRA 208 (413)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~s~dg~i~iw~~~~~ 208 (413)
..+...+.+++|+|+++++++ |+ +..+++|++++++....... ..+..+++.++++.+ ++++.|++|++||..++
T Consensus 16 ~~h~~~V~~v~fs~dg~~la~-g~-~~~~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~ 91 (355)
T 3vu4_A 16 NHVSNPVTDYEFNQDQSCLIL-ST-LKSFEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKK 91 (355)
T ss_dssp ---CCCCCEEEECTTSSEEEE-EC-SSEEEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSSTTEEEEEETTTT
T ss_pred ccCCCceEEEEECCCCCEEEE-Ec-CCEEEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECCccEEEEEECCCC
Confidence 345778899999999997776 55 44688999988776655432 347788888888877 57888899999999887
Q ss_pred cccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCC-eEEEEEeCCCCCce
Q 040361 209 RAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREG-RYVRSLCHPSGSAL 287 (413)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~~v 287 (413)
+ .+..+. |...|.+++++++. ++.+ .|+.|++||+.++ +.+..+.. ..
T Consensus 92 ~-----------------------~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~----~~ 140 (355)
T 3vu4_A 92 Q-----------------------DVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR----FG 140 (355)
T ss_dssp E-----------------------EEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE----EE
T ss_pred c-----------------------EEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc----CC
Confidence 6 455554 67799999998763 4443 4789999999988 65555443 23
Q ss_pred eeEEEccCCcEEEE--ECCCCeEEEEEeCCce------------------eeeeecCCceeEEEecCCCCEEEEeCCCCe
Q 040361 288 SKLAASRHGRIVLY--GDDDLSLHLFSINGKH------------------LASSESNGRLNCLELSACGQFLVCGGDQGQ 347 (413)
Q Consensus 288 ~~~~~~~~~~~l~~--~~~d~~i~i~d~~~~~------------------~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~ 347 (413)
..+++++ .++++ |+.+|.|++||++... .....|...|.+++|+|+|++|++|+.||+
T Consensus 141 ~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~ 218 (355)
T 3vu4_A 141 GVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGT 218 (355)
T ss_dssp EEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCS
T ss_pred ceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCC
Confidence 3455666 55555 6889999999998432 233578899999999999999999999998
Q ss_pred -EEEEECCCCceEEEec-C-CCCcEEEEEEccCCeEE-EEcCCCeEEEEEecCCc
Q 040361 348 -IVVRSMNSLEVVRRYS-G-VGKIITSLAVTPEECFL-AGTKDGCLLVYSIENRR 398 (413)
Q Consensus 348 -i~v~d~~~~~~~~~~~-~-~~~~v~~~~~~~~~~~l-~~~~dg~i~vw~~~~~~ 398 (413)
|++||+++++.+..+. + |...|.+++|+|++.++ +++.|+.|++||++++.
T Consensus 219 ~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 219 IIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp EEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred EEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence 9999999999999998 5 99999999999998766 69999999999998764
No 122
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=1.3e-29 Score=232.51 Aligned_cols=243 Identities=15% Similarity=0.174 Sum_probs=194.5
Q ss_pred CCCCC-CceeeecCCCCccccCCCcCCCcc-----cCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCC
Q 040361 93 QLQSG-GNFTFSGSQDPFFGVGADILSPRN-----VGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDG 166 (413)
Q Consensus 93 ~~s~~-~~~l~~~~~d~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~ 166 (413)
.++|+ +.++++++.|+.+++|+....... ...+......+...+.++.|+|++..++++|+.||.|++|++.++
T Consensus 135 ~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~ 214 (430)
T 2xyi_A 135 RYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINAT 214 (430)
T ss_dssp EEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSC
T ss_pred EECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCC
Confidence 57887 689999999999999764321110 122333334566778999999999855555777999999999873
Q ss_pred cE-------EEEeecCCCeEEEEEECC-CCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeee
Q 040361 167 RV-------VQSIRQHRDVVSCVAVTT-DGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILC 238 (413)
Q Consensus 167 ~~-------~~~~~~h~~~v~~~~~~~-~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (413)
.. ...+.+|...|.+++|+| ++.+|++++.||.|++||+++.... .++..+.
T Consensus 215 ~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~--------------------~~~~~~~ 274 (430)
T 2xyi_A 215 PKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS--------------------KPSHTVD 274 (430)
T ss_dssp CBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSS--------------------SCSEEEE
T ss_pred CCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCC--------------------cceeEee
Confidence 22 356678999999999999 7889999999999999999876310 1456677
Q ss_pred cCCCCeEEEEEecCCC-EEEEeeCCCcEEEEEccC-CeEEEEEeCCCCCceeeEEEccCCc-EEEEECCCCeEEEEEeCC
Q 040361 239 GHDDIITCLYVSVELD-IVISGSKDGTCVFHTLRE-GRYVRSLCHPSGSALSKLAASRHGR-IVLYGDDDLSLHLFSING 315 (413)
Q Consensus 239 ~h~~~i~~~~~~~~~~-~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~ 315 (413)
.|...|++++|+|++. ++++|+.||.|++||+++ ...+..+..+ ...|.+++|+|++. ++++++.|+.|++||++.
T Consensus 275 ~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h-~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 275 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESH-KDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 353 (430)
T ss_dssp CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECC-SSCEEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred cCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecC-CCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence 8999999999999887 688999999999999998 5567777765 46899999999884 789999999999999974
Q ss_pred ---------------ceeee-eecCCceeEEEecCCCC-EEEEeCCCCeEEEEECCCC
Q 040361 316 ---------------KHLAS-SESNGRLNCLELSACGQ-FLVCGGDQGQIVVRSMNSL 356 (413)
Q Consensus 316 ---------------~~~~~-~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~v~d~~~~ 356 (413)
..+.. ..|...|.+++|+|++. +|++++.||.|++|++...
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 354 IGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp TTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred CccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 22222 35778899999999999 8999999999999998753
No 123
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.5e-29 Score=245.99 Aligned_cols=209 Identities=18% Similarity=0.249 Sum_probs=177.4
Q ss_pred EEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEE
Q 040361 169 VQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLY 248 (413)
Q Consensus 169 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~ 248 (413)
+..+.+|.+.|++++|+|++++|++|+.||.|++||+..+.. .....+.+|.+.|++++
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~---------------------~~~~~l~~h~~~V~~l~ 60 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH---------------------KLIDTLTGHEGPVWRVD 60 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE---------------------EEEEEECCCSSCEEEEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC---------------------ccceeccCCcCceEEEE
Confidence 346788999999999999999999999999999999974320 15677889999999999
Q ss_pred EecC--CCEEEEeeCCCcEEEEEccCCe--EEEEEeCCCCCceeeEEEccC--CcEEEEECCCCeEEEEEeCCc----ee
Q 040361 249 VSVE--LDIVISGSKDGTCVFHTLREGR--YVRSLCHPSGSALSKLAASRH--GRIVLYGDDDLSLHLFSINGK----HL 318 (413)
Q Consensus 249 ~~~~--~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~----~~ 318 (413)
|+++ ++++++|+.||.|++||+.+++ .+..+..+ ...|.+++|+|+ +..+++++.||.|++||++.. ..
T Consensus 61 ~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h-~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~ 139 (753)
T 3jro_A 61 WAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVH-SASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI 139 (753)
T ss_dssp ECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCC-SSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCE
T ss_pred ecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCC-CCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCccee
Confidence 9988 8999999999999999999987 55555544 568999999999 999999999999999999843 22
Q ss_pred eeeecCCceeEEEecC-------------CCCEEEEeCCCCeEEEEECCCC----ceEEEecCCCCcEEEEEEccC---C
Q 040361 319 ASSESNGRLNCLELSA-------------CGQFLVCGGDQGQIVVRSMNSL----EVVRRYSGVGKIITSLAVTPE---E 378 (413)
Q Consensus 319 ~~~~~~~~i~~~~~s~-------------~~~~l~~~~~dg~i~v~d~~~~----~~~~~~~~~~~~v~~~~~~~~---~ 378 (413)
....+...+.+++|+| ++.++++|+.||.|++||++++ .....+.+|...|++++|+|+ +
T Consensus 140 ~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~ 219 (753)
T 3jro_A 140 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR 219 (753)
T ss_dssp EEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSS
T ss_pred EeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCC
Confidence 3356888999999999 5899999999999999999876 556778899999999999999 7
Q ss_pred eEE-EEcCCCeEEEEEecCCcc
Q 040361 379 CFL-AGTKDGCLLVYSIENRRT 399 (413)
Q Consensus 379 ~~l-~~~~dg~i~vw~~~~~~~ 399 (413)
.++ +++.||.|++||+.+++.
T Consensus 220 ~~l~s~s~Dg~I~iwd~~~~~~ 241 (753)
T 3jro_A 220 SYLASVSQDRTCIIWTQDNEQG 241 (753)
T ss_dssp EEEEEEESSSCEEEEEESSSSS
T ss_pred CEEEEEecCCEEEEecCCCCCC
Confidence 766 699999999999998753
No 124
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=6.5e-29 Score=222.82 Aligned_cols=216 Identities=16% Similarity=0.219 Sum_probs=175.8
Q ss_pred EcCCCcEEEEeecCCCeEEEEEECCC---CCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeee
Q 040361 162 ALNDGRVVQSIRQHRDVVSCVAVTTD---GSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILC 238 (413)
Q Consensus 162 ~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (413)
+....+.+..+.+|.+.|++++|+|+ +++|++|+.||.|++||+.+... .....+.
T Consensus 25 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~---------------------~~~~~~~ 83 (368)
T 3mmy_A 25 NHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ---------------------TIPKAQQ 83 (368)
T ss_dssp SSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC---------------------EEEEEEE
T ss_pred CCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc---------------------eeEEEec
Confidence 45566778888999999999999999 69999999999999999987321 1236788
Q ss_pred cCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEE--ccCCcEEEEECCCCeEEEEEeCC-
Q 040361 239 GHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAA--SRHGRIVLYGDDDLSLHLFSING- 315 (413)
Q Consensus 239 ~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~d~~i~i~d~~~- 315 (413)
+|...|++++|+|++++|++++.||.|++||+++++.+..... ...|.+++| ++++.++++++.|+.|++||++.
T Consensus 84 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 161 (368)
T 3mmy_A 84 MHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQH--DAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSS 161 (368)
T ss_dssp ECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC--SSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCS
T ss_pred cccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccc--cCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCC
Confidence 9999999999999999999999999999999999988775543 458999999 89999999999999999999973
Q ss_pred ceeeeee------------------------------------------cCCceeEEEecCCCCE----EEEeCCCCeEE
Q 040361 316 KHLASSE------------------------------------------SNGRLNCLELSACGQF----LVCGGDQGQIV 349 (413)
Q Consensus 316 ~~~~~~~------------------------------------------~~~~i~~~~~s~~~~~----l~~~~~dg~i~ 349 (413)
+.+.... ......++++.++... +++++.||.|+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~ 241 (368)
T 3mmy_A 162 NPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVA 241 (368)
T ss_dssp SCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEE
T ss_pred cEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEE
Confidence 2222211 1123445555554443 99999999999
Q ss_pred EEECCCC---ceEEEecCCCC------------cEEEEEEccCCeEE-EEcCCCeEEEEEecCCccc
Q 040361 350 VRSMNSL---EVVRRYSGVGK------------IITSLAVTPEECFL-AGTKDGCLLVYSIENRRTS 400 (413)
Q Consensus 350 v~d~~~~---~~~~~~~~~~~------------~v~~~~~~~~~~~l-~~~~dg~i~vw~~~~~~~~ 400 (413)
+||+... +.+..+..|.. .|++++|+|++.++ +++.||.|++||+.+++..
T Consensus 242 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~ 308 (368)
T 3mmy_A 242 IHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKL 308 (368)
T ss_dssp EEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEE
T ss_pred EEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEE
Confidence 9999987 55667777765 79999999998555 6999999999999987654
No 125
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=6.8e-29 Score=224.72 Aligned_cols=258 Identities=8% Similarity=-0.031 Sum_probs=169.7
Q ss_pred CCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecC-------CCCEEEEeecCCCeEEEEEcCCC
Q 040361 94 LQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTP-------SENFLITCGNWENSFQVIALNDG 166 (413)
Q Consensus 94 ~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~g~~d~~i~i~~~~~~ 166 (413)
+++++.++++++.|+++++|+...........+.....|...+.++.|+| .+..++++|+.|++|+|||+.++
T Consensus 97 ~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~ 176 (393)
T 4gq1_A 97 SPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDE 176 (393)
T ss_dssp CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETT
T ss_pred cCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCC
Confidence 56777899999999999997533222111122233345678899999987 13345555667999999999998
Q ss_pred cEEEEeecCCCeEEEEEECCCC-CEEEEccCCCcEEEEEeccccccccccccceeecCCCceeee---cCceeeeecCCC
Q 040361 167 RVVQSIRQHRDVVSCVAVTTDG-SILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIV---ETPFHILCGHDD 242 (413)
Q Consensus 167 ~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~h~~ 242 (413)
..+..+..|...|.+++|+|++ .+|++|+.|++|++||+.+++............... ..... ........+|..
T Consensus 177 ~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~ 255 (393)
T 4gq1_A 177 GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPW-LLTLNTLPLVNTCHSSGIAS 255 (393)
T ss_dssp EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCC-SEEEESGGGC------CCSS
T ss_pred ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccce-EEecccccceeeeecccccc
Confidence 8888888899999999999987 479999999999999998876432211110000000 00000 011223467889
Q ss_pred CeEEEEEe-cCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCC-----------------CceeeEEEcc--CCcEEEEE
Q 040361 243 IITCLYVS-VELDIVISGSKDGTCVFHTLREGRYVRSLCHPSG-----------------SALSKLAASR--HGRIVLYG 302 (413)
Q Consensus 243 ~i~~~~~~-~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-----------------~~v~~~~~~~--~~~~l~~~ 302 (413)
.+.++.|+ ++++.+++++.|+.+++||+..++....+..+.. .......+.+ ++.++++|
T Consensus 256 ~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg 335 (393)
T 4gq1_A 256 SLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAH 335 (393)
T ss_dssp SCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEE
T ss_pred cceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEE
Confidence 99999997 7999999999999999999987766554432211 1112223333 44567788
Q ss_pred CCCCeEEEEEeC-Ccee-eeeecCCceeEEEecCCCCEEEEeCCCCeEEEEEC
Q 040361 303 DDDLSLHLFSIN-GKHL-ASSESNGRLNCLELSACGQFLVCGGDQGQIVVRSM 353 (413)
Q Consensus 303 ~~d~~i~i~d~~-~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~ 353 (413)
+.|+.|++||+. +... ....+..+|.+++|+|||++||+++.+| +.+|.+
T Consensus 336 s~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 336 SQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp TTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred CCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 999999999998 3333 3356888999999999999999998776 556654
No 126
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=4.5e-27 Score=201.02 Aligned_cols=177 Identities=12% Similarity=0.078 Sum_probs=139.3
Q ss_pred CCCeEEEEEc-CCCcEEEEeecCCCeEEEEEECC---CCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceee
Q 040361 154 WENSFQVIAL-NDGRVVQSIRQHRDVVSCVAVTT---DGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVI 229 (413)
Q Consensus 154 ~d~~i~i~~~-~~~~~~~~~~~h~~~v~~~~~~~---~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (413)
.|+.|++|++ .+|+.+..+.+|...++.++|++ ++.+|++|+.|++|++||+.+++
T Consensus 155 ~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk-------------------- 214 (356)
T 2w18_A 155 SDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQ-------------------- 214 (356)
T ss_dssp TTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCC--------------------
T ss_pred CCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCc--------------------
Confidence 4999999999 56899999999999999999999 78999999999999999999988
Q ss_pred ecCceeeeecCC---CCeEEEEEecCCCEE------------EEeeCCCcEEEEEccCCeEEEEEeC--CCCCceeeEEE
Q 040361 230 VETPFHILCGHD---DIITCLYVSVELDIV------------ISGSKDGTCVFHTLREGRYVRSLCH--PSGSALSKLAA 292 (413)
Q Consensus 230 ~~~~~~~~~~h~---~~i~~~~~~~~~~~l------------~s~~~dg~i~vwd~~~~~~~~~~~~--~~~~~v~~~~~ 292 (413)
.+.++.+|. ..+.+++|+|++.++ ++|+.|++|++||..+++.+..+.. +.+.....+..
T Consensus 215 ---~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg 291 (356)
T 2w18_A 215 ---LLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEG 291 (356)
T ss_dssp ---EEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEE
T ss_pred ---EEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcc
Confidence 677777654 367788999999876 5688899999999999998876531 11111112333
Q ss_pred ccCCcEEEEECCCCeEEEEEeC-Cceeeee-ecCCce-eEEEecCCCCEEEEeCCCCeEEEEEC
Q 040361 293 SRHGRIVLYGDDDLSLHLFSIN-GKHLASS-ESNGRL-NCLELSACGQFLVCGGDQGQIVVRSM 353 (413)
Q Consensus 293 ~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~-~~~~~i-~~~~~s~~~~~l~~~~~dg~i~v~d~ 353 (413)
+.++.++++++.|++|++||+. ++.+... .|...+ .+++|+|||++|++|+.|++|+|||+
T Consensus 292 ~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 292 DVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred ccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 4447889999999999999999 4555554 355544 46899999999999999999999985
No 127
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.96 E-value=1.7e-25 Score=209.78 Aligned_cols=315 Identities=10% Similarity=0.085 Sum_probs=233.5
Q ss_pred CCCCCeEEEEeecCCcEEEEecCceEEEEEee------ccCCCCCCceeeecCCCCccccCCCcCCCcccCCCCccccee
Q 040361 59 RHQPSGIVYVGMLDSSIVLVNQGLTLSVKMWL------TTQLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFEL 132 (413)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (413)
+.+...++.++..++.+.+|+......+..+. ...++|+|+++++++.|+.+.+|+.. . .. ......+..
T Consensus 145 ~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~-~-~t--~~~~~~i~~ 220 (543)
T 1nir_A 145 LDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLW-A-KE--PTKVAEIKI 220 (543)
T ss_dssp CCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEETTSEEEEEETT-S-SS--CEEEEEEEC
T ss_pred cCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcccceEEECCCCCEEEEECCCCeEEEEECc-C-CC--CcEEEEEec
Confidence 34556677777788899999876654444443 23589999999999999999997531 0 11 112234455
Q ss_pred cceeEEEEecC----CCCEEEEeecCCCeEEEEEcCCCcEEEEeec----------CC-CeEEEEEECCCCC-EEEEccC
Q 040361 133 GSQCFTTMQTP----SENFLITCGNWENSFQVIALNDGRVVQSIRQ----------HR-DVVSCVAVTTDGS-ILATGSY 196 (413)
Q Consensus 133 ~~~~~~~~~~~----~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~----------h~-~~v~~~~~~~~~~-~l~s~s~ 196 (413)
+.....++++| +|+++++++..+++|.+||..+++++..+.. |. ..+..+.++|++. ++++...
T Consensus 221 g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~ 300 (543)
T 1nir_A 221 GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE 300 (543)
T ss_dssp CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC
Confidence 67788999999 9999998887799999999999999988865 22 3789999999765 4567778
Q ss_pred CCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEe-eCCCcEEEEEccCCeE
Q 040361 197 DTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISG-SKDGTCVFHTLREGRY 275 (413)
Q Consensus 197 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~-~~dg~i~vwd~~~~~~ 275 (413)
++.|.+||..+.+.. .+..+ .+...+..+.|+|++++++++ ..+++|.+||+.++++
T Consensus 301 ~g~i~vvd~~~~~~l---------------------~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l 358 (543)
T 1nir_A 301 TGKVLLVNYKDIDNL---------------------TVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRL 358 (543)
T ss_dssp TTEEEEEECTTSSSC---------------------EEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEE
T ss_pred CCeEEEEEecCCCcc---------------------eeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeE
Confidence 999999999876510 11122 356678889999999977655 5689999999999999
Q ss_pred EEEEeCC---CCCceeeEEEccC-CcEEEEEC-CCCeEEEEEeCC--------ceeeee-ecCCceeEEEecCCCCEEEE
Q 040361 276 VRSLCHP---SGSALSKLAASRH-GRIVLYGD-DDLSLHLFSING--------KHLASS-ESNGRLNCLELSACGQFLVC 341 (413)
Q Consensus 276 ~~~~~~~---~~~~v~~~~~~~~-~~~l~~~~-~d~~i~i~d~~~--------~~~~~~-~~~~~i~~~~~s~~~~~l~~ 341 (413)
+..+... +......+ ++|+ +..++++. .|++|.+||+.. +.+... .+...+..++++|++++|++
T Consensus 359 ~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v 437 (543)
T 1nir_A 359 SALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYV 437 (543)
T ss_dssp EEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEE
T ss_pred EEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEE
Confidence 8888642 21112222 4676 66666665 689999999974 333333 35567788999999999999
Q ss_pred eC-------CCCeEEEEECCCCceE-EEe--------cCCCCcEEEEEEccCCeEE-EE-----cCCCeEEEEEecCCcc
Q 040361 342 GG-------DQGQIVVRSMNSLEVV-RRY--------SGVGKIITSLAVTPEECFL-AG-----TKDGCLLVYSIENRRT 399 (413)
Q Consensus 342 ~~-------~dg~i~v~d~~~~~~~-~~~--------~~~~~~v~~~~~~~~~~~l-~~-----~~dg~i~vw~~~~~~~ 399 (413)
++ .+++|.|||+.+++.. ..+ ..+...+..+.|+|+|+.+ ++ +.|+.|.|||.++++.
T Consensus 438 ~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~ 517 (543)
T 1nir_A 438 DTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKL 517 (543)
T ss_dssp CCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred ecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceE
Confidence 87 2679999999998876 443 3457789999999998655 22 2579999999999875
Q ss_pred c
Q 040361 400 S 400 (413)
Q Consensus 400 ~ 400 (413)
.
T Consensus 518 ~ 518 (543)
T 1nir_A 518 K 518 (543)
T ss_dssp E
T ss_pred E
Confidence 5
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.95 E-value=4.4e-26 Score=207.48 Aligned_cols=225 Identities=14% Similarity=0.130 Sum_probs=176.9
Q ss_pred CCEEEEeecC--C---CeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCC---cEEEEEeccccccccccc
Q 040361 145 ENFLITCGNW--E---NSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDT---TVMVWEVIRARAPEKRVR 216 (413)
Q Consensus 145 ~~~l~~~g~~--d---~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg---~i~iw~~~~~~~~~~~~~ 216 (413)
+..+++++.. + +.|++||+. +.....+.+|...+.+++|+|||++|++++.++ .|++||+.+++
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~------- 214 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA------- 214 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC-------
T ss_pred CCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCc-------
Confidence 5666665542 2 799999997 455677788999999999999999999999875 99999998876
Q ss_pred cceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEE-EeeCCCc--EEEEEccCCeEEEEEeCCCCCceeeEEEc
Q 040361 217 NMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVI-SGSKDGT--CVFHTLREGRYVRSLCHPSGSALSKLAAS 293 (413)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~-s~~~dg~--i~vwd~~~~~~~~~~~~~~~~~v~~~~~~ 293 (413)
...+..|...+.+++|+|+++.|+ +++.++. |++||+.+++. ..+..+ ...+..++|+
T Consensus 215 -----------------~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~-~~~~~~~~~s 275 (415)
T 2hqs_A 215 -----------------VRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDG-RSNNTEPTWF 275 (415)
T ss_dssp -----------------EEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCC-SSCEEEEEEC
T ss_pred -----------------EEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCC-CCcccceEEC
Confidence 345667888999999999999877 6666665 99999988876 344443 4578999999
Q ss_pred cCCcEEEEECC-CC--eEEEEEeCCceeee-eecCCceeEEEecCCCCEEEEeCCC---CeEEEEECCCCceEEEecCCC
Q 040361 294 RHGRIVLYGDD-DL--SLHLFSINGKHLAS-SESNGRLNCLELSACGQFLVCGGDQ---GQIVVRSMNSLEVVRRYSGVG 366 (413)
Q Consensus 294 ~~~~~l~~~~~-d~--~i~i~d~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~v~d~~~~~~~~~~~~~~ 366 (413)
|+|+.|++++. ++ .|++||+.+..... ..+...+.+++|+|+|++|++++.+ +.|++||+.+++.. .+..+.
T Consensus 276 pdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~ 354 (415)
T 2hqs_A 276 PDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF 354 (415)
T ss_dssp TTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS
T ss_pred CCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC
Confidence 99998887775 44 68888988554433 3456788899999999999988764 58999999988764 455554
Q ss_pred CcEEEEEEccCCeEE-EEcCCC---eEEEEEecCCc
Q 040361 367 KIITSLAVTPEECFL-AGTKDG---CLLVYSIENRR 398 (413)
Q Consensus 367 ~~v~~~~~~~~~~~l-~~~~dg---~i~vw~~~~~~ 398 (413)
.+.+++|+|||+++ +++.++ .|++||+..+.
T Consensus 355 -~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~ 389 (415)
T 2hqs_A 355 -LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF 389 (415)
T ss_dssp -SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC
T ss_pred -CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCc
Confidence 89999999998755 465555 79999987543
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=2.1e-25 Score=209.14 Aligned_cols=274 Identities=13% Similarity=0.201 Sum_probs=207.1
Q ss_pred CCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEc--CCCcEEE
Q 040361 93 QLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIAL--NDGRVVQ 170 (413)
Q Consensus 93 ~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~--~~~~~~~ 170 (413)
.++|++.++++++.|+.+.+|+... ......+..+..+..+.++|+++++++++. |+.|++||+ .+++.+.
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t------~~~~~~i~~g~~~~~v~~spdg~~l~v~~~-d~~V~v~D~~~~t~~~~~ 216 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDS------KKIVKVIDTGYAVHISRMSASGRYLLVIGR-DARIDMIDLWAKEPTKVA 216 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTT------CCEEEEEECSTTEEEEEECTTSCEEEEEET-TSEEEEEETTSSSCEEEE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCC------ceEEEEEecCcccceEEECCCCCEEEEECC-CCeEEEEECcCCCCcEEE
Confidence 3688888889999999999864221 111223332333678889999999988665 799999999 8899998
Q ss_pred EeecCCCeEEEEEECC----CCCEEEEccC-CCcEEEEEeccccccccccccceeecCCCceeeecCceeeeec------
Q 040361 171 SIRQHRDVVSCVAVTT----DGSILATGSY-DTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCG------ 239 (413)
Q Consensus 171 ~~~~h~~~v~~~~~~~----~~~~l~s~s~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 239 (413)
.+. +...+..++|+| ||++|++++. +++|.+||..+.+ ++..+..
T Consensus 217 ~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~-----------------------~~~~i~~~g~~~~ 272 (543)
T 1nir_A 217 EIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE-----------------------PKQIVSTRGMTVD 272 (543)
T ss_dssp EEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC-----------------------EEEEEECCEECSS
T ss_pred EEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccc-----------------------cceeecccCcccC
Confidence 888 456789999999 9999999885 8999999988776 3333332
Q ss_pred ----C-CCCeEEEEEecCCC-EEEEeeCCCcEEEEEccCCeEEE--EEeCCCCCceeeEEEccCCcEEEEE-CCCCeEEE
Q 040361 240 ----H-DDIITCLYVSVELD-IVISGSKDGTCVFHTLREGRYVR--SLCHPSGSALSKLAASRHGRIVLYG-DDDLSLHL 310 (413)
Q Consensus 240 ----h-~~~i~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~i 310 (413)
| ...+.++.+++++. ++++...++.|.+||+.+.+.+. .+. .+..+..+.|+|++++++++ ..+++|.+
T Consensus 273 ~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~--~~~~~~~~~~spdg~~l~va~~~~~~v~v 350 (543)
T 1nir_A 273 TQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG--AAPFLHDGGWDSSHRYFMTAANNSNKVAV 350 (543)
T ss_dssp SCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE--CCSSCCCEEECTTSCEEEEEEGGGTEEEE
T ss_pred ccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec--cCcCccCceECCCCCEEEEEecCCCeEEE
Confidence 2 23788999999766 56677789999999998766544 343 24568899999999977654 56889999
Q ss_pred EEeCCceee-eee-----cCCceeEEEecCC-CCEEEEeC-CCCeEEEEECCC-------CceEEEecCCCCcEEEEEEc
Q 040361 311 FSINGKHLA-SSE-----SNGRLNCLELSAC-GQFLVCGG-DQGQIVVRSMNS-------LEVVRRYSGVGKIITSLAVT 375 (413)
Q Consensus 311 ~d~~~~~~~-~~~-----~~~~i~~~~~s~~-~~~l~~~~-~dg~i~v~d~~~-------~~~~~~~~~~~~~v~~~~~~ 375 (413)
||+....+. ... |.+....+ ++|+ +.+++++. .|++|.+||+.+ ++.+.++.+|...+..++++
T Consensus 351 ~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~ 429 (543)
T 1nir_A 351 IDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTH 429 (543)
T ss_dssp EETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECC
T ss_pred EECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcC
Confidence 999854443 332 33333333 4677 66667765 689999999998 89999999998888999999
Q ss_pred cCCeEEE-Ec-------CCCeEEEEEecCCccc
Q 040361 376 PEECFLA-GT-------KDGCLLVYSIENRRTS 400 (413)
Q Consensus 376 ~~~~~l~-~~-------~dg~i~vw~~~~~~~~ 400 (413)
|+++.|. ++ .+++|.+||+.+++..
T Consensus 430 pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~ 462 (543)
T 1nir_A 430 PKSSHLYVDTTFNPDARISQSVAVFDLKNLDAK 462 (543)
T ss_dssp TTCCEEEECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred CCCCcEEEecCCCCCcccCceEEEEECCCCCCC
Confidence 9987775 44 2779999999988755
No 130
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.95 E-value=4.1e-25 Score=201.07 Aligned_cols=247 Identities=13% Similarity=0.034 Sum_probs=189.6
Q ss_pred CceeeecCCC------CccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCC--CeEEEEEcCCCcEE
Q 040361 98 GNFTFSGSQD------PFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWE--NSFQVIALNDGRVV 169 (413)
Q Consensus 98 ~~~l~~~~~d------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d--~~i~i~~~~~~~~~ 169 (413)
+..++.++.+ +.+++|+.. . ........+...+.++.|+|+|+.+++++..+ ..|++||+.+++..
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~--g----~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~ 216 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYD--G----YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR 216 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETT--S----CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE
T ss_pred CCEEEEEEecCCCCccceEEEEcCC--C----CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE
Confidence 5555544443 678886432 1 12233344567889999999999998876522 49999999998875
Q ss_pred EEeecCCCeEEEEEECCCCCEEE-EccCCCc--EEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEE
Q 040361 170 QSIRQHRDVVSCVAVTTDGSILA-TGSYDTT--VMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITC 246 (413)
Q Consensus 170 ~~~~~h~~~v~~~~~~~~~~~l~-s~s~dg~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 246 (413)
.+..|...+.+++|+|||++|+ +++.|+. |++||+.+++ ...+..|...+.+
T Consensus 217 -~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~------------------------~~~l~~~~~~~~~ 271 (415)
T 2hqs_A 217 -QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ------------------------IRQVTDGRSNNTE 271 (415)
T ss_dssp -EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC------------------------EEECCCCSSCEEE
T ss_pred -EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC------------------------EEeCcCCCCcccc
Confidence 5667888999999999999888 6666655 8999987765 3566778889999
Q ss_pred EEEecCCCEEEEeeC-CC--cEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCC---CeEEEEEeCCceeee
Q 040361 247 LYVSVELDIVISGSK-DG--TCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDD---LSLHLFSINGKHLAS 320 (413)
Q Consensus 247 ~~~~~~~~~l~s~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~ 320 (413)
++|+|+++.|++++. ++ .|.+||+.+++.. .+..+ ...+..++|+|+|++|++++.+ ..|++||+.+.....
T Consensus 272 ~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~~~-~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~ 349 (415)
T 2hqs_A 272 PTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWE-GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV 349 (415)
T ss_dssp EEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCS-SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE
T ss_pred eEECCCCCEEEEEECCCCCcEEEEEECCCCCEE-EEecC-CCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEE
Confidence 999999998888776 45 6778898877643 33332 4578899999999999887754 589999998655544
Q ss_pred eecCCceeEEEecCCCCEEEEeCCCC---eEEEEECCCCceEEEecCCCCcEEEEEEccCC
Q 040361 321 SESNGRLNCLELSACGQFLVCGGDQG---QIVVRSMNSLEVVRRYSGVGKIITSLAVTPEE 378 (413)
Q Consensus 321 ~~~~~~i~~~~~s~~~~~l~~~~~dg---~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 378 (413)
......+.+++|+|+|++|++++.++ .|++||+. +.....+..|.+.|.+++|+|.-
T Consensus 350 l~~~~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 350 LSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp CCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCC
T ss_pred ecCCCCcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCcccccc
Confidence 43334899999999999999888776 89999987 56677888899999999999973
No 131
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.94 E-value=1.7e-24 Score=192.26 Aligned_cols=241 Identities=14% Similarity=0.159 Sum_probs=173.6
Q ss_pred ecceeEEEEecCCCCEEEEeecCCCeEEEEEcC--CCcE--EEEeecCCCeEEEEEECCCCCEEEEcc-CCCcEEEEEec
Q 040361 132 LGSQCFTTMQTPSENFLITCGNWENSFQVIALN--DGRV--VQSIRQHRDVVSCVAVTTDGSILATGS-YDTTVMVWEVI 206 (413)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~--~~~~--~~~~~~h~~~v~~~~~~~~~~~l~s~s-~dg~i~iw~~~ 206 (413)
+...+..+.++|+++++++++..++.|.+|++. +++. +..+..+. .+..++|+|++++|++++ .++.|.+||+.
T Consensus 36 ~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~ 114 (343)
T 1ri6_A 36 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLE 114 (343)
T ss_dssp CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECC
Confidence 345567788999999998877755999999997 5553 34455444 788999999999887665 48899999995
Q ss_pred cccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEee-CCCcEEEEEccC-CeEEE----EEe
Q 040361 207 RARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGS-KDGTCVFHTLRE-GRYVR----SLC 280 (413)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~-~dg~i~vwd~~~-~~~~~----~~~ 280 (413)
.+.. ......+. ....+.+++|+|+++.+++++ .++.|.+||+.+ ++... .+.
T Consensus 115 ~~~~--------------------~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~ 173 (343)
T 1ri6_A 115 DGLP--------------------VGVVDVVE-GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVT 173 (343)
T ss_dssp TTEE--------------------EEEEEEEC-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEE
T ss_pred CCcc--------------------cccccccc-CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccc
Confidence 2210 00233333 334588999999999888777 899999999987 65432 333
Q ss_pred CCCCCceeeEEEccCCcEEEE-ECCCCeEEEEEeCC--cee---eeee-------cCCceeEEEecCCCCEEE-EeCCCC
Q 040361 281 HPSGSALSKLAASRHGRIVLY-GDDDLSLHLFSING--KHL---ASSE-------SNGRLNCLELSACGQFLV-CGGDQG 346 (413)
Q Consensus 281 ~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~i~d~~~--~~~---~~~~-------~~~~i~~~~~s~~~~~l~-~~~~dg 346 (413)
.+.+..+..++|+|+++++++ +..++.+.+|+++. ..+ .... ....+..++|+|+|++|+ ++..++
T Consensus 174 ~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~ 253 (343)
T 1ri6_A 174 TVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTAS 253 (343)
T ss_dssp CSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTT
T ss_pred cCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCC
Confidence 344557888999999997654 55889999999952 221 1111 123566899999998877 455789
Q ss_pred eEEEEECC----CCceEEEecCCCCcEEEEEEccCCeEE-EEc-CCCeEEEEEec
Q 040361 347 QIVVRSMN----SLEVVRRYSGVGKIITSLAVTPEECFL-AGT-KDGCLLVYSIE 395 (413)
Q Consensus 347 ~i~v~d~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~-~dg~i~vw~~~ 395 (413)
.|.+||+. ..+.+..+..+.. +.+++|+|+++++ +++ .++.|.+|+++
T Consensus 254 ~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 254 LITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp EEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred EEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 99999998 3345555654444 8899999998644 554 68999999765
No 132
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.94 E-value=4.4e-24 Score=188.75 Aligned_cols=238 Identities=11% Similarity=0.068 Sum_probs=177.8
Q ss_pred EEEecCCCCEEEEeecCCCeEEEEEcCCCcE-EEEeecCCCeEEEEEECCCCCEEEEccCCC---cEEEEEecccccccc
Q 040361 138 TTMQTPSENFLITCGNWENSFQVIALNDGRV-VQSIRQHRDVVSCVAVTTDGSILATGSYDT---TVMVWEVIRARAPEK 213 (413)
Q Consensus 138 ~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg---~i~iw~~~~~~~~~~ 213 (413)
.++++|+++.+++++..++.|.+||..+++. ...+..+.....+++|+|++++|+++..++ .|.+||+.+++
T Consensus 44 ~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~---- 119 (331)
T 3u4y_A 44 DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNK---- 119 (331)
T ss_dssp EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTE----
T ss_pred eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCC----
Confidence 8889999998888887789999999999988 777777777666699999999999666653 89999998776
Q ss_pred ccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEE-EeeCCCc-EEEEEccCCeEEEEE---eCCCCCcee
Q 040361 214 RVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVI-SGSKDGT-CVFHTLREGRYVRSL---CHPSGSALS 288 (413)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~-s~~~dg~-i~vwd~~~~~~~~~~---~~~~~~~v~ 288 (413)
.+..+. +.....+++|+|++++++ +...++. |.+|++.....+... ....+..+.
T Consensus 120 -------------------~~~~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~ 179 (331)
T 3u4y_A 120 -------------------FISTIP-IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPF 179 (331)
T ss_dssp -------------------EEEEEE-CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEE
T ss_pred -------------------eEEEEE-CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCcc
Confidence 334443 344568999999998555 4455688 999998754332111 112244688
Q ss_pred eEEEccCCcEE-EEECCCCeEEEEEeC-Cce---eeeeecCCceeEEEecCCCCEEEEeC-CCCeEEEEECCCCce--EE
Q 040361 289 KLAASRHGRIV-LYGDDDLSLHLFSIN-GKH---LASSESNGRLNCLELSACGQFLVCGG-DQGQIVVRSMNSLEV--VR 360 (413)
Q Consensus 289 ~~~~~~~~~~l-~~~~~d~~i~i~d~~-~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~v~d~~~~~~--~~ 360 (413)
.++|+|+++++ +++..++.|++||++ ++. +........+..++|+|+|+++++++ .++.|.+||+.+++. +.
T Consensus 180 ~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~ 259 (331)
T 3u4y_A 180 NITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVK 259 (331)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEE
T ss_pred ceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeec
Confidence 99999999865 555578999999998 444 44555667788999999999776654 578899999998877 44
Q ss_pred EecCC----CC---cEEEEEEccCCeEE--EEcCCCeEEEEEecCCcc
Q 040361 361 RYSGV----GK---IITSLAVTPEECFL--AGTKDGCLLVYSIENRRT 399 (413)
Q Consensus 361 ~~~~~----~~---~v~~~~~~~~~~~l--~~~~dg~i~vw~~~~~~~ 399 (413)
.+..+ .. ....++|+||++++ ++..++.|.+|++.+...
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 260 SFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVV 307 (331)
T ss_dssp EEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEE
T ss_pred ccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcc
Confidence 43322 22 23558999998644 466778999999987654
No 133
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.93 E-value=1.2e-23 Score=187.46 Aligned_cols=258 Identities=9% Similarity=0.043 Sum_probs=196.8
Q ss_pred CCCCCCceeeecCC-------CCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCC
Q 040361 93 QLQSGGNFTFSGSQ-------DPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALND 165 (413)
Q Consensus 93 ~~s~~~~~l~~~~~-------d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~ 165 (413)
.++|+|+.++.++. ++.+.+++. .. ......+.....+..+.++++++.+++++..++.|.+||..+
T Consensus 47 ~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~----~~--~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~ 120 (353)
T 3vgz_A 47 AYSQQENALWLATSQSRKLDKGGVVYRLDP----VT--LEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKT 120 (353)
T ss_dssp EEETTTTEEEEEECCCTTTEESEEEEEECT----TT--CCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred EECCCCCEEEEEcCCCcCCCCCccEEEEcC----CC--CeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCC
Confidence 56889988877764 456766532 11 112223334455677889999998888887789999999999
Q ss_pred CcEEEEeecCCC---------eEEEEEECCCCCEEEEcc--CCCcEEEEEeccccccccccccceeecCCCceeeecCce
Q 040361 166 GRVVQSIRQHRD---------VVSCVAVTTDGSILATGS--YDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPF 234 (413)
Q Consensus 166 ~~~~~~~~~h~~---------~v~~~~~~~~~~~l~s~s--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (413)
++.+..+..+.. .+.+++|+|+++++++++ .++.|.+||..+++ ..
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~-----------------------~~ 177 (353)
T 3vgz_A 121 GEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIK-----------------------LK 177 (353)
T ss_dssp CCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTE-----------------------EE
T ss_pred CeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCc-----------------------eE
Confidence 999888876543 278999999999887775 47889999998776 34
Q ss_pred eeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCC---CCCceeeEEEccCCcEEEEEC-CCCeEEE
Q 040361 235 HILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHP---SGSALSKLAASRHGRIVLYGD-DDLSLHL 310 (413)
Q Consensus 235 ~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~-~d~~i~i 310 (413)
..+..+...+.+++|+|+++.+++++.++.|.+||+.+++....+... ....+..++++|+++.+++++ .++.|.+
T Consensus 178 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~ 257 (353)
T 3vgz_A 178 TAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLV 257 (353)
T ss_dssp EEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEE
T ss_pred EEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEE
Confidence 555545666888999999999999999999999999999988877652 233577899999998776655 4589999
Q ss_pred EEeCC-ceeeeeecCCceeEEEecCCCCEEEEe-CCCCeEEEEECCCCceEEEecCCCCcEEEEEEccCCeEE
Q 040361 311 FSING-KHLASSESNGRLNCLELSACGQFLVCG-GDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFL 381 (413)
Q Consensus 311 ~d~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 381 (413)
||+.. +.+....... ...++|+|+|++++++ ..++.|.+||..+++.+..+.. ...+.+++|+|+|+++
T Consensus 258 ~d~~~~~~~~~~~~~~-~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l 328 (353)
T 3vgz_A 258 VDTRNGNILAKVAAPE-SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT-PTHPNSLALSADGKTL 328 (353)
T ss_dssp EETTTCCEEEEEECSS-CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC-CSEEEEEEECTTSCEE
T ss_pred EECCCCcEEEEEEcCC-CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec-CCCCCeEEEcCCCCEE
Confidence 99974 4444443333 3679999999966555 4789999999999998888874 4478999999998633
No 134
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.93 E-value=3.1e-23 Score=183.25 Aligned_cols=234 Identities=12% Similarity=0.110 Sum_probs=181.5
Q ss_pred EEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccC-CCcEEEEEecccccccccccc
Q 040361 139 TMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSY-DTTVMVWEVIRARAPEKRVRN 217 (413)
Q Consensus 139 ~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~-dg~i~iw~~~~~~~~~~~~~~ 217 (413)
.+|.++++.+++++..++.|.+||..+++....+..+...+ .++|+|+++++++++. ++.|.+||+.+++
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~-------- 73 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEP-------- 73 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSS--------
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCc--------
Confidence 34567788888888889999999999999998888777777 9999999997766655 8999999998876
Q ss_pred ceeecCCCceeeecCc-eeeeecCCCCeEEEEEecCCCEEEEeeCCC---cEEEEEccCCeEEEEEeCCCCCceeeEEEc
Q 040361 218 MQIEAPRKDYVIVETP-FHILCGHDDIITCLYVSVELDIVISGSKDG---TCVFHTLREGRYVRSLCHPSGSALSKLAAS 293 (413)
Q Consensus 218 ~~~~~~~~~~~~~~~~-~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~ 293 (413)
. ...+..+..+..+++|+|++++++++..++ .|.+||+.+++.+..+... .....++|+
T Consensus 74 ---------------~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~--~~~~~~~~s 136 (331)
T 3u4y_A 74 ---------------PKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP--YDAVGIAIS 136 (331)
T ss_dssp ---------------CEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC--TTEEEEEEC
T ss_pred ---------------eeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC--CCccceEEC
Confidence 3 455566666666699999999988665553 8999999999988887654 357899999
Q ss_pred cCCcEEEEE-CCCCe-EEEEEeCCc-ee-----eeeecCCceeEEEecCCCCEEE-EeCCCCeEEEEECCCCce---EEE
Q 040361 294 RHGRIVLYG-DDDLS-LHLFSINGK-HL-----ASSESNGRLNCLELSACGQFLV-CGGDQGQIVVRSMNSLEV---VRR 361 (413)
Q Consensus 294 ~~~~~l~~~-~~d~~-i~i~d~~~~-~~-----~~~~~~~~i~~~~~s~~~~~l~-~~~~dg~i~v~d~~~~~~---~~~ 361 (413)
|++++++++ ..++. +.+|+++.. .+ ........+..++|+|+|++++ ++..++.|++||+.+++. +..
T Consensus 137 pdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~ 216 (331)
T 3u4y_A 137 PNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNA 216 (331)
T ss_dssp TTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEE
T ss_pred CCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeee
Confidence 999855544 55577 999998731 11 1223445689999999999655 455789999999999888 777
Q ss_pred ecCCCCcEEEEEEccCCeEE-E-EcCCCeEEEEEecCCcc
Q 040361 362 YSGVGKIITSLAVTPEECFL-A-GTKDGCLLVYSIENRRT 399 (413)
Q Consensus 362 ~~~~~~~v~~~~~~~~~~~l-~-~~~dg~i~vw~~~~~~~ 399 (413)
+.. ...+..++|+|||+++ + ...++.|.+||+++++.
T Consensus 217 ~~~-~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~ 255 (331)
T 3u4y_A 217 VGT-NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTL 255 (331)
T ss_dssp EEC-SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEE
T ss_pred ccC-CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCce
Confidence 764 4567899999998744 3 45678899999998765
No 135
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.93 E-value=2.9e-24 Score=190.22 Aligned_cols=236 Identities=14% Similarity=0.037 Sum_probs=182.8
Q ss_pred eeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeec-C----CCeEEEEEECCCCCEEEEcc------------CC
Q 040361 135 QCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQ-H----RDVVSCVAVTTDGSILATGS------------YD 197 (413)
Q Consensus 135 ~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~-h----~~~v~~~~~~~~~~~l~s~s------------~d 197 (413)
.+..+.++|+++.+++++..++.|.+||+.+++.+..+.. + ...+..++|+|++++|++++ .+
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 114 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP 114 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence 4567889999999888887789999999999998877763 2 22577899999999998886 57
Q ss_pred CcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEE
Q 040361 198 TTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVR 277 (413)
Q Consensus 198 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 277 (413)
+.|.+||+.+++ .+..+.. ...+.+++|+|++++++++ ++.|.+||+.+++...
T Consensus 115 ~~i~v~d~~~~~-----------------------~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~ 168 (337)
T 1pby_B 115 TRVALYDAETLS-----------------------RRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVE 168 (337)
T ss_dssp CEEEEEETTTTE-----------------------EEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEE
T ss_pred ceEEEEECCCCc-----------------------EEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEee
Confidence 999999997765 2333332 4557889999999988877 6899999999999887
Q ss_pred EEeCCCCCceeeEEEccCCcEEEEECCC-C-----------------------eEEEEEeCCceeee---eecCCceeEE
Q 040361 278 SLCHPSGSALSKLAASRHGRIVLYGDDD-L-----------------------SLHLFSINGKHLAS---SESNGRLNCL 330 (413)
Q Consensus 278 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~-----------------------~i~i~d~~~~~~~~---~~~~~~i~~~ 330 (413)
.+..... ...+.++|++..+++.+.. + .|.+||+.+..+.. ..+...+.++
T Consensus 169 ~~~~~~~--~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~ 246 (337)
T 1pby_B 169 DKPIQSW--EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFST 246 (337)
T ss_dssp EECSTTT--TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEE
T ss_pred eeecccc--CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeE
Confidence 7765431 1233788988866554433 2 46899998544322 2345678899
Q ss_pred EecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEccCCeE-EEEcCCCeEEEEEecCCcccc
Q 040361 331 ELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECF-LAGTKDGCLLVYSIENRRTSL 401 (413)
Q Consensus 331 ~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~dg~i~vw~~~~~~~~~ 401 (413)
+|+|+|++++++ ++.|++||+.+++.+..+.. ...+.+++|+|++++ ++++.++.|.+||+++++...
T Consensus 247 ~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~ 315 (337)
T 1pby_B 247 AVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL-PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKG 315 (337)
T ss_dssp EECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEE
T ss_pred EECCCCCEEEEe--CCeEEEEECCCCcCcceecC-CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEE
Confidence 999999999988 78999999999988887764 346789999999864 467889999999999876543
No 136
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.93 E-value=1.1e-23 Score=206.66 Aligned_cols=310 Identities=13% Similarity=0.023 Sum_probs=218.5
Q ss_pred ecCCCCCCeEEEEeec-CC-----cEEEEecCceEEEEEe-------------------------------eccCCCCCC
Q 040361 56 CSTRHQPSGIVYVGML-DS-----SIVLVNQGLTLSVKMW-------------------------------LTTQLQSGG 98 (413)
Q Consensus 56 ~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~-------------------------------~~~~~s~~~ 98 (413)
...+.+++..++.+.. ++ .+.+|+.......++. ....|||||
T Consensus 41 ~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg 120 (741)
T 2ecf_A 41 KPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDA 120 (741)
T ss_dssp EEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTS
T ss_pred CceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCC
Confidence 3345677777776666 66 7999986554333332 334689999
Q ss_pred ceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCe
Q 040361 99 NFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDV 178 (413)
Q Consensus 99 ~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~ 178 (413)
++|++++. +.+.+|+...... ........+...+..+.|+|+|+.++++. ++.|++||+.+++.......+...
T Consensus 121 ~~l~~~~~-~~i~~~d~~~~~~---~~~~~l~~~~~~~~~~~~SPDG~~la~~~--~~~i~~~d~~~g~~~~~~~~~~~~ 194 (741)
T 2ecf_A 121 QRLLFPLG-GELYLYDLKQEGK---AAVRQLTHGEGFATDAKLSPKGGFVSFIR--GRNLWVIDLASGRQMQLTADGSTT 194 (741)
T ss_dssp SEEEEEET-TEEEEEESSSCST---TSCCBCCCSSSCEEEEEECTTSSEEEEEE--TTEEEEEETTTTEEEECCCCCCSS
T ss_pred CEEEEEeC-CcEEEEECCCCCc---ceEEEcccCCcccccccCCCCCCEEEEEe--CCcEEEEecCCCCEEEeccCCccc
Confidence 99988876 7777764322100 01112223346688899999999988865 679999999988877655544432
Q ss_pred ----------------EEEEEECCCCCEEEEccCCC---------------------------------cEEEEEecc-c
Q 040361 179 ----------------VSCVAVTTDGSILATGSYDT---------------------------------TVMVWEVIR-A 208 (413)
Q Consensus 179 ----------------v~~~~~~~~~~~l~s~s~dg---------------------------------~i~iw~~~~-~ 208 (413)
+..++|+|||++|++++.|+ .|.+||+.+ +
T Consensus 195 ~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~ 274 (741)
T 2ecf_A 195 IGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQA 274 (741)
T ss_dssp EEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTC
T ss_pred eeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCC
Confidence 47899999999999988765 677778766 5
Q ss_pred cccccccccceeecCCCceeeecCceeee--ecCCCCeEEEEEecCCCEEEEeeC-----CCcEEEEEccCCeEEEEEeC
Q 040361 209 RAPEKRVRNMQIEAPRKDYVIVETPFHIL--CGHDDIITCLYVSVELDIVISGSK-----DGTCVFHTLREGRYVRSLCH 281 (413)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~i~~~~~~~~~~~l~s~~~-----dg~i~vwd~~~~~~~~~~~~ 281 (413)
+ ..... ..|...+..++| ||++.|+.++. +..|++||+.+++....+..
T Consensus 275 ~-----------------------~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~ 330 (741)
T 2ecf_A 275 Q-----------------------TQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHE 330 (741)
T ss_dssp C-----------------------CEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEE
T ss_pred c-----------------------eEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEc
Confidence 4 11111 147778999999 99999887653 56899999999987776654
Q ss_pred CCCC---ceeeEEEccCCcEEEEECCCCeEEEEEeC--Cceeee-eecCCceeEE-EecCCCCEEE-EeCCCC--eEEEE
Q 040361 282 PSGS---ALSKLAASRHGRIVLYGDDDLSLHLFSIN--GKHLAS-SESNGRLNCL-ELSACGQFLV-CGGDQG--QIVVR 351 (413)
Q Consensus 282 ~~~~---~v~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~-~~~~~~i~~~-~~s~~~~~l~-~~~~dg--~i~v~ 351 (413)
+... .+..++|+|+|+++++++.++.+++|.++ +. ... ..+...+..+ .|+|+|+.|+ +++.++ .++||
T Consensus 331 ~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~ 409 (741)
T 2ecf_A 331 TSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIY 409 (741)
T ss_dssp ECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEE
T ss_pred CCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEE
Confidence 4322 34689999999999999999877777664 55 333 3456667777 5999998775 455555 89999
Q ss_pred ECCC-CceEEEecCCCCcEEEEEEccCCeEEE--EcCC---CeEEEEEecCC
Q 040361 352 SMNS-LEVVRRYSGVGKIITSLAVTPEECFLA--GTKD---GCLLVYSIENR 397 (413)
Q Consensus 352 d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~--~~~d---g~i~vw~~~~~ 397 (413)
++.. +.....+.. ...+.+++|+|||+.++ .+.. ..+.+|+...+
T Consensus 410 ~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 410 AVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp EEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred EEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 8864 555666765 66789999999986553 3322 46888887543
No 137
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.93 E-value=4.5e-23 Score=183.55 Aligned_cols=243 Identities=12% Similarity=0.141 Sum_probs=173.6
Q ss_pred cceeEEEEecCCCCEEEEeecC--CCeEEEEEcCCCc--EEEEeecCCCeEEEEEECCCCCEEEEcc-CCCcEEEEEecc
Q 040361 133 GSQCFTTMQTPSENFLITCGNW--ENSFQVIALNDGR--VVQSIRQHRDVVSCVAVTTDGSILATGS-YDTTVMVWEVIR 207 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~g~~--d~~i~i~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~s-~dg~i~iw~~~~ 207 (413)
......++++|+++ +++++.. ++.|++|++.+++ .+..+..+...+..++|+||+++|++++ .++.|.+|++..
T Consensus 39 ~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~ 117 (347)
T 3hfq_A 39 TQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAA 117 (347)
T ss_dssp CSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECT
T ss_pred cCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCC
Confidence 34456688899998 6665542 6899999997766 3445455778889999999999888887 689999999964
Q ss_pred ccccccccccceeecCCCceeeecCceeeee---------cCCCCeEEEEEecCCCEEEEeeCCCcEEEEEcc-CCeEE-
Q 040361 208 ARAPEKRVRNMQIEAPRKDYVIVETPFHILC---------GHDDIITCLYVSVELDIVISGSKDGTCVFHTLR-EGRYV- 276 (413)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~-~~~~~- 276 (413)
..... .+..+. .+...+.+++|+|+++++++...++.|.+||+. +++..
T Consensus 118 ~g~~~--------------------~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~ 177 (347)
T 3hfq_A 118 DGALT--------------------LTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSE 177 (347)
T ss_dssp TSCEE--------------------EEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEE
T ss_pred CCCee--------------------ecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEE
Confidence 22100 111111 123358899999999977777778899999998 55433
Q ss_pred -EEEeCCCCCceeeEEEccCCcEEEE-ECCCCeEEEEEeCC--ceeee---e-ecC------CceeEEEecCCCCEEE-E
Q 040361 277 -RSLCHPSGSALSKLAASRHGRIVLY-GDDDLSLHLFSING--KHLAS---S-ESN------GRLNCLELSACGQFLV-C 341 (413)
Q Consensus 277 -~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~i~d~~~--~~~~~---~-~~~------~~i~~~~~s~~~~~l~-~ 341 (413)
..+..+.+..+..++|+|+|+++++ ...++.+.+|+++. ..+.. . ... ..+..++|+|+|++|+ +
T Consensus 178 ~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~ 257 (347)
T 3hfq_A 178 QSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVS 257 (347)
T ss_dssp EEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEE
T ss_pred eeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEE
Confidence 2333444456788999999996555 67788999999873 22211 1 111 4588899999999875 4
Q ss_pred eCCCCeEEEEECC---CCceEEEecCCCCcEEEEEEccCCeEE-EE-cCCCeEEEEEecC
Q 040361 342 GGDQGQIVVRSMN---SLEVVRRYSGVGKIITSLAVTPEECFL-AG-TKDGCLLVYSIEN 396 (413)
Q Consensus 342 ~~~dg~i~v~d~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~-~~dg~i~vw~~~~ 396 (413)
...++.|.+|++. ..+.+..+..+...+..++|+|||++| ++ ..++.|.+|+++.
T Consensus 258 ~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~ 317 (347)
T 3hfq_A 258 NRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDL 317 (347)
T ss_dssp EETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred eCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeC
Confidence 5568999999997 335556666666778999999998644 44 4568999996643
No 138
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.92 E-value=2.5e-22 Score=178.98 Aligned_cols=242 Identities=11% Similarity=0.062 Sum_probs=188.9
Q ss_pred ecceeEEEEecCCCCEEEEeecC------CCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEE-EccCCCcEEEEE
Q 040361 132 LGSQCFTTMQTPSENFLITCGNW------ENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILA-TGSYDTTVMVWE 204 (413)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~g~~------d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~s~dg~i~iw~ 204 (413)
.......+.++|+++.++++... ++.|.+||..+++.+..+.. ...+..++|+|++++++ +...++.|.+||
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d 117 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAID 117 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence 35567788999999998887753 67899999999999888874 34577899999999654 556689999999
Q ss_pred eccccccccccccceeecCCCceeeecCceeeeecCCC---------CeEEEEEecCCCEEEEee--CCCcEEEEEccCC
Q 040361 205 VIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDD---------IITCLYVSVELDIVISGS--KDGTCVFHTLREG 273 (413)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---------~i~~~~~~~~~~~l~s~~--~dg~i~vwd~~~~ 273 (413)
..+++ .+..+..+.. .+.+++|+|+++.+++++ .++.|.+||+.++
T Consensus 118 ~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~ 174 (353)
T 3vgz_A 118 AKTGE-----------------------VKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNI 174 (353)
T ss_dssp TTTCC-----------------------EEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTT
T ss_pred CCCCe-----------------------eEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCC
Confidence 98876 3333433322 268899999999777665 4789999999999
Q ss_pred eEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCceee-eee-----cCCceeEEEecCCCCEEEEeCC-CC
Q 040361 274 RYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKHLA-SSE-----SNGRLNCLELSACGQFLVCGGD-QG 346 (413)
Q Consensus 274 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~-----~~~~i~~~~~s~~~~~l~~~~~-dg 346 (413)
+.+..+... +..+..++++|+++.+++++.++.|.+||+...... ... +...+..++|+|+|+++++++. ++
T Consensus 175 ~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~ 253 (353)
T 3vgz_A 175 KLKTAIQNT-GKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAA 253 (353)
T ss_dssp EEEEEECCC-CTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSS
T ss_pred ceEEEecCC-CCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCC
Confidence 998888633 345788999999999999999999999999854433 322 3456788999999997776654 59
Q ss_pred eEEEEECCCCceEEEecCCCCcEEEEEEccCCe-EEE-EcCCCeEEEEEecCCccc
Q 040361 347 QIVVRSMNSLEVVRRYSGVGKIITSLAVTPEEC-FLA-GTKDGCLLVYSIENRRTS 400 (413)
Q Consensus 347 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~-~~~dg~i~vw~~~~~~~~ 400 (413)
.|.+||..+++.+..+.... ...++|+|+++ +++ ...++.|.+||+.+++..
T Consensus 254 ~v~~~d~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~ 307 (353)
T 3vgz_A 254 EVLVVDTRNGNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVV 307 (353)
T ss_dssp EEEEEETTTCCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEE
T ss_pred EEEEEECCCCcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEE
Confidence 99999999999888777543 25689999975 444 667999999999887644
No 139
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.92 E-value=1.2e-23 Score=206.40 Aligned_cols=236 Identities=12% Similarity=0.057 Sum_probs=185.9
Q ss_pred cceeEEEEecCCCCEEEEeecCCC-----eEEEEEcCCCcEEEEeecCC------------------------CeEEEEE
Q 040361 133 GSQCFTTMQTPSENFLITCGNWEN-----SFQVIALNDGRVVQSIRQHR------------------------DVVSCVA 183 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~g~~d~-----~i~i~~~~~~~~~~~~~~h~------------------------~~v~~~~ 183 (413)
...+..+.|+|+|+++++++..|+ .|++||+.+++....+..+. ..|.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 345778999999999998776477 89999999998887776543 2388999
Q ss_pred ECCCCCEEEEccCCCcEEEEEeccc---cccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEee
Q 040361 184 VTTDGSILATGSYDTTVMVWEVIRA---RAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGS 260 (413)
Q Consensus 184 ~~~~~~~l~s~s~dg~i~iw~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~ 260 (413)
|+|||++|++++. +.|.+||+.++ . ...+..|...+..++|+|||++|+.++
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~------------------------~~~l~~~~~~~~~~~~SPDG~~la~~~ 170 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAA------------------------VRQLTHGEGFATDAKLSPKGGFVSFIR 170 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTS------------------------CCBCCCSSSCEEEEEECTTSSEEEEEE
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcce------------------------EEEcccCCcccccccCCCCCCEEEEEe
Confidence 9999999999886 99999999877 4 334556778899999999999999887
Q ss_pred CCCcEEEEEccCCeEEEEEeCCCCC---------------ceeeEEEccCCcEEEEECCCC-------------------
Q 040361 261 KDGTCVFHTLREGRYVRSLCHPSGS---------------ALSKLAASRHGRIVLYGDDDL------------------- 306 (413)
Q Consensus 261 ~dg~i~vwd~~~~~~~~~~~~~~~~---------------~v~~~~~~~~~~~l~~~~~d~------------------- 306 (413)
++.|++||+.+++.......+... .+..++|+|||+.|++++.|+
T Consensus 171 -~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~ 249 (741)
T 2ecf_A 171 -GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVI 249 (741)
T ss_dssp -TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEE
T ss_pred -CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccce
Confidence 568999999988766544332210 147899999999999887655
Q ss_pred --------------eEEEEEeCC-ceeeee----ecCCceeEEEecCCCCEEEEeCC-----CCeEEEEECCCCceEEEe
Q 040361 307 --------------SLHLFSING-KHLASS----ESNGRLNCLELSACGQFLVCGGD-----QGQIVVRSMNSLEVVRRY 362 (413)
Q Consensus 307 --------------~i~i~d~~~-~~~~~~----~~~~~i~~~~~s~~~~~l~~~~~-----dg~i~v~d~~~~~~~~~~ 362 (413)
.|++||+.+ ...... .+...+..++| |||++|++++. +..|++||+.+++....+
T Consensus 250 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~ 328 (741)
T 2ecf_A 250 EQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLA 328 (741)
T ss_dssp EEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEE
T ss_pred EeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEE
Confidence 788899876 554432 35677899999 99999987653 568999999999877766
Q ss_pred cCCCC----cEEEEEEccCCeEE-EEcCCCeEEEEEec
Q 040361 363 SGVGK----IITSLAVTPEECFL-AGTKDGCLLVYSIE 395 (413)
Q Consensus 363 ~~~~~----~v~~~~~~~~~~~l-~~~~dg~i~vw~~~ 395 (413)
..+.. .+.+++|+|||+++ +++.||.+.+|.++
T Consensus 329 ~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~ 366 (741)
T 2ecf_A 329 HETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRID 366 (741)
T ss_dssp EEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEEC
T ss_pred EcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEc
Confidence 55443 45688999998766 47888988888776
No 140
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.92 E-value=2.9e-22 Score=177.75 Aligned_cols=289 Identities=12% Similarity=0.104 Sum_probs=192.2
Q ss_pred eEEEEe-ecCCcEEEEecC---ceEEEEEee------ccCCCCCCceeeecCCC-CccccCCCcCCCcccCCCCccccee
Q 040361 64 GIVYVG-MLDSSIVLVNQG---LTLSVKMWL------TTQLQSGGNFTFSGSQD-PFFGVGADILSPRNVGSPLAESFEL 132 (413)
Q Consensus 64 ~~~~~~-~~~~~~~~~~~~---~~~~~~~~~------~~~~s~~~~~l~~~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (413)
..++++ ..++.+.+|+.. ......... ...++|+|+++++++.+ +.+.+|+........ .....+..
T Consensus 5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~ 82 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL--TFAAESAL 82 (343)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE--EEEEEEEC
T ss_pred EEEEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCce--eecccccc
Confidence 344444 668899999763 222222222 23589999988888776 888886432111111 01112222
Q ss_pred cceeEEEEecCCCCEEEEeecCCCeEEEEEcC---CCcEEEEeecCCCeEEEEEECCCCCEEEEcc-CCCcEEEEEecc-
Q 040361 133 GSQCFTTMQTPSENFLITCGNWENSFQVIALN---DGRVVQSIRQHRDVVSCVAVTTDGSILATGS-YDTTVMVWEVIR- 207 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~---~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s-~dg~i~iw~~~~- 207 (413)
...+..++++|+++.+++++..++.|.+||+. .++....+..+ ..+.+++|+|++++|++++ .++.|.+||+.+
T Consensus 83 ~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~ 161 (343)
T 1ri6_A 83 PGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDD 161 (343)
T ss_dssp SSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred CCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCC
Confidence 34677889999999998888778999999994 33445555543 4588999999999888877 899999999976
Q ss_pred ccccccccccceeecCCCceeeecCcee--eeec-CCCCeEEEEEecCCCEEEEe-eCCCcEEEEEccC--CeE--EEEE
Q 040361 208 ARAPEKRVRNMQIEAPRKDYVIVETPFH--ILCG-HDDIITCLYVSVELDIVISG-SKDGTCVFHTLRE--GRY--VRSL 279 (413)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-h~~~i~~~~~~~~~~~l~s~-~~dg~i~vwd~~~--~~~--~~~~ 279 (413)
++.. ... .+.. ....+..++|+|++++++.+ ..++.|.+||+.. ++. ...+
T Consensus 162 ~~~~---------------------~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~ 220 (343)
T 1ri6_A 162 GHLV---------------------AQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTL 220 (343)
T ss_dssp SCEE---------------------EEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEE
T ss_pred Ccee---------------------eecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeec
Confidence 4300 011 1222 33478899999999976544 5789999999953 432 2223
Q ss_pred e-CCC----CCceeeEEEccCCcEEE-EECCCCeEEEEEeC--Cce---eeeeecCCceeEEEecCCCCEEEEeC-CCCe
Q 040361 280 C-HPS----GSALSKLAASRHGRIVL-YGDDDLSLHLFSIN--GKH---LASSESNGRLNCLELSACGQFLVCGG-DQGQ 347 (413)
Q Consensus 280 ~-~~~----~~~v~~~~~~~~~~~l~-~~~~d~~i~i~d~~--~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~ 347 (413)
. .+. ...+..++|+|++++++ +...++.|.+||++ +.. +........+..++|+|+|++|++++ .++.
T Consensus 221 ~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~ 300 (343)
T 1ri6_A 221 DMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHH 300 (343)
T ss_dssp ECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCE
T ss_pred cccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCCCe
Confidence 2 111 12456799999998776 55578999999997 322 22233344588999999999888887 6899
Q ss_pred EEEEE--CCCCc--eEEEecCCCCcEEEEEEccC
Q 040361 348 IVVRS--MNSLE--VVRRYSGVGKIITSLAVTPE 377 (413)
Q Consensus 348 i~v~d--~~~~~--~~~~~~~~~~~v~~~~~~~~ 377 (413)
|.+|+ ..+++ .+..+.. .....+++|.++
T Consensus 301 v~v~~~d~~~g~~~~~~~~~~-g~~p~~i~~~~~ 333 (343)
T 1ri6_A 301 ISVYEIVGEQGLLHEKGRYAV-GQGPMWVVVNAH 333 (343)
T ss_dssp EEEEEEETTTTEEEEEEEEEC-SSSCCEEEEEEE
T ss_pred EEEEEEcCCCceeeEcccccc-CCCCeeEEEEcc
Confidence 99994 44553 3444543 245667778775
No 141
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.92 E-value=3.8e-23 Score=179.28 Aligned_cols=221 Identities=13% Similarity=0.112 Sum_probs=168.8
Q ss_pred ecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEecc-ccccccccccceeecCCCceeee
Q 040361 152 GNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIR-ARAPEKRVRNMQIEAPRKDYVIV 230 (413)
Q Consensus 152 g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 230 (413)
+..|+.|++||+.+++.. .+..|...|.+++|+|++++|++++ ++.|.+||+.+ ++
T Consensus 18 ~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~--------------------- 74 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPS--------------------- 74 (297)
T ss_dssp CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCS---------------------
T ss_pred CCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCC---------------------
Confidence 445889999999988866 4455899999999999999999986 78999999988 65
Q ss_pred cCceeeeecC-CCCeEEEEEecCCCEEEEee--CCCcEEEEE--ccCCeEEEEEeCCCCCceeeEEEccCCcEEE-EECC
Q 040361 231 ETPFHILCGH-DDIITCLYVSVELDIVISGS--KDGTCVFHT--LREGRYVRSLCHPSGSALSKLAASRHGRIVL-YGDD 304 (413)
Q Consensus 231 ~~~~~~~~~h-~~~i~~~~~~~~~~~l~s~~--~dg~i~vwd--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~ 304 (413)
.......| ...+.+++|+|+++++++++ .++...+|. +.++. ...+... ..+..++|+|+++.++ ++..
T Consensus 75 --~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~--~~~~~~~~spdg~~l~~~~~~ 149 (297)
T 2ojh_A 75 --PEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN--LPSYWHGWSPDGKSFTYCGIR 149 (297)
T ss_dssp --CEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS--SSEEEEEECTTSSEEEEEEEE
T ss_pred --ceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC--CCccceEECCCCCEEEEEECC
Confidence 33334444 36788999999999999988 334555554 44444 3444433 2488899999999877 6778
Q ss_pred CCeEEEEEeC--Ccee-eeeecCCceeEEEecCCCCEEEEeC-CCCeEEEEECC-CCceEEEecCCCCcEEEEEEccCCe
Q 040361 305 DLSLHLFSIN--GKHL-ASSESNGRLNCLELSACGQFLVCGG-DQGQIVVRSMN-SLEVVRRYSGVGKIITSLAVTPEEC 379 (413)
Q Consensus 305 d~~i~i~d~~--~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~v~d~~-~~~~~~~~~~~~~~v~~~~~~~~~~ 379 (413)
++.+++|+++ +... ....+...+.+++|+|+|++|++++ .++.+++|++. .+..+..+..|...+.+++|+|+++
T Consensus 150 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 229 (297)
T 2ojh_A 150 DQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGD 229 (297)
T ss_dssp TTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSS
T ss_pred CCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCC
Confidence 8999999864 3333 3345667899999999999887665 58899999886 5566777877888899999999987
Q ss_pred EE-EEcCC-----------CeEEEEEecCCccc
Q 040361 380 FL-AGTKD-----------GCLLVYSIENRRTS 400 (413)
Q Consensus 380 ~l-~~~~d-----------g~i~vw~~~~~~~~ 400 (413)
++ +++.+ +.|++||+++++..
T Consensus 230 ~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 262 (297)
T 2ojh_A 230 KVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVE 262 (297)
T ss_dssp EEEEEEEETTCCSCCSSEEEEEEEEETTSCSCE
T ss_pred EEEEEEcCCCCCcccccCceEEEEEecCCCCce
Confidence 55 44443 57999999887543
No 142
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.92 E-value=1.7e-23 Score=181.60 Aligned_cols=230 Identities=11% Similarity=0.046 Sum_probs=172.2
Q ss_pred ceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCC-CcEEEEeecC-CCeEEEEEECCCCCEEEEcc--CCCcEEEEEe
Q 040361 130 FELGSQCFTTMQTPSENFLITCGNWENSFQVIALND-GRVVQSIRQH-RDVVSCVAVTTDGSILATGS--YDTTVMVWEV 205 (413)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~-~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~s--~dg~i~iw~~ 205 (413)
..+...+.++.|+|+++++++++ ++.|++||+.+ ++.......| ...+.+++|+|++++|++++ .++...+|.+
T Consensus 38 ~~~~~~v~~~~~spdg~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~ 115 (297)
T 2ojh_A 38 WQTPELFEAPNWSPDGKYLLLNS--EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLL 115 (297)
T ss_dssp EEESSCCEEEEECTTSSEEEEEE--TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEE
T ss_pred ccCCcceEeeEECCCCCEEEEEc--CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEE
Confidence 34466788999999999888854 88999999999 8887777666 47889999999999999998 4466777776
Q ss_pred ccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEE-EeeCCCcEEEEEccC-CeEEEEEeCCC
Q 040361 206 IRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVI-SGSKDGTCVFHTLRE-GRYVRSLCHPS 283 (413)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~-s~~~dg~i~vwd~~~-~~~~~~~~~~~ 283 (413)
+.... ....+..+ ..+..++|+|+++.++ +++.++.+.+|+++. +.....+..+
T Consensus 116 ~~~~~----------------------~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~- 171 (297)
T 2ojh_A 116 PSTGG----------------------TPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHG- 171 (297)
T ss_dssp ETTCC----------------------CCEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCS-
T ss_pred ECCCC----------------------ceEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccC-
Confidence 53321 12233333 3488899999999877 788899999998642 2233344333
Q ss_pred CCceeeEEEccCCcEEEEEC-CCCeEEEEEeC--Cceeee-eecCCceeEEEecCCCCEEEEeCCC-----------CeE
Q 040361 284 GSALSKLAASRHGRIVLYGD-DDLSLHLFSIN--GKHLAS-SESNGRLNCLELSACGQFLVCGGDQ-----------GQI 348 (413)
Q Consensus 284 ~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~--~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~d-----------g~i 348 (413)
...+..++|+|+++.+++++ .++.+++|+++ +..... ..+...+..++|+|+|++|++++.+ +.|
T Consensus 172 ~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l 251 (297)
T 2ojh_A 172 EGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRV 251 (297)
T ss_dssp SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEE
T ss_pred CCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEE
Confidence 45789999999999877655 58889999875 334333 3456778899999999999888765 569
Q ss_pred EEEECCCCce--EEEecCCCCcEEEEEEccCCeEE-EEcC
Q 040361 349 VVRSMNSLEV--VRRYSGVGKIITSLAVTPEECFL-AGTK 385 (413)
Q Consensus 349 ~v~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l-~~~~ 385 (413)
++||+.+++. +..+.+|...+.+++|+|++..+ +++.
T Consensus 252 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 291 (297)
T 2ojh_A 252 QLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRY 291 (297)
T ss_dssp EEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEE
T ss_pred EEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEe
Confidence 9999998765 34444788889999999998655 4443
No 143
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.91 E-value=2.8e-23 Score=203.19 Aligned_cols=275 Identities=12% Similarity=0.055 Sum_probs=189.2
Q ss_pred ccCCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecc----eeEEEEecCCCCEEEEeecC--------CCeE
Q 040361 91 TTQLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGS----QCFTTMQTPSENFLITCGNW--------ENSF 158 (413)
Q Consensus 91 ~~~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~g~~--------d~~i 158 (413)
...|+|||+++++ +.|+.+++|+...... ...+..+. .+..+.|+|+|++++++... ++.+
T Consensus 21 ~~~~spdg~~~~~-~~dg~i~~~d~~~g~~------~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i 93 (723)
T 1xfd_A 21 EAKWISDTEFIYR-EQKGTVRLWNVETNTS------TVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYY 93 (723)
T ss_dssp CCCBSSSSCBCCC-CSSSCEEEBCGGGCCC------EEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEE
T ss_pred ccEEcCCCcEEEE-eCCCCEEEEECCCCcE------EEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeE
Confidence 3578999998877 7889999865322111 11111122 37789999999999887542 3789
Q ss_pred EEEEcCCCcEEEEee---cCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCcee
Q 040361 159 QVIALNDGRVVQSIR---QHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFH 235 (413)
Q Consensus 159 ~i~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (413)
++||+.+++. ..+. +|...+..++|+|||+.|++++. +.|++||+.+++ ...
T Consensus 94 ~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~-----------------------~~~ 148 (723)
T 1xfd_A 94 VLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQ-----------------------AIR 148 (723)
T ss_dssp EEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSC-----------------------CEE
T ss_pred EEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCc-----------------------eEE
Confidence 9999998876 3343 35556889999999999999886 789999998765 222
Q ss_pred eeecCCC------------------CeEEEEEecCCCEEEEeeCCC----------------------------------
Q 040361 236 ILCGHDD------------------IITCLYVSVELDIVISGSKDG---------------------------------- 263 (413)
Q Consensus 236 ~~~~h~~------------------~i~~~~~~~~~~~l~s~~~dg---------------------------------- 263 (413)
....+.. .+.+++|+||++.|++++.|+
T Consensus 149 ~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 228 (723)
T 1xfd_A 149 VVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSI 228 (723)
T ss_dssp EECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEE
T ss_pred EecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCee
Confidence 2222222 337899999999999887553
Q ss_pred cEEEEEccCCeEEEEEeCCC-----CCceeeEEEccCCcEEEEEC----CCCeEEEEEeCCceeee---eecCCce----
Q 040361 264 TCVFHTLREGRYVRSLCHPS-----GSALSKLAASRHGRIVLYGD----DDLSLHLFSINGKHLAS---SESNGRL---- 327 (413)
Q Consensus 264 ~i~vwd~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~----~d~~i~i~d~~~~~~~~---~~~~~~i---- 327 (413)
.|++||+.+++....+..+. ...+..++|+|||+++++.. .+..|++||+.+..... ..+...+
T Consensus 229 ~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~ 308 (723)
T 1xfd_A 229 SLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQN 308 (723)
T ss_dssp EEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCC
T ss_pred EEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccC
Confidence 79999998887655555431 34688899999999887654 23579999998543322 2233333
Q ss_pred eEEEecCCCCEEEE--eCCCC------eEEEEE-CCCCce--EEEecCCCCcEEE-EEEccCCeEE-E-EcCC--CeEEE
Q 040361 328 NCLELSACGQFLVC--GGDQG------QIVVRS-MNSLEV--VRRYSGVGKIITS-LAVTPEECFL-A-GTKD--GCLLV 391 (413)
Q Consensus 328 ~~~~~s~~~~~l~~--~~~dg------~i~v~d-~~~~~~--~~~~~~~~~~v~~-~~~~~~~~~l-~-~~~d--g~i~v 391 (413)
..++|+|||+.|+. +..++ .|++|| ...++. ...+..+...+.. ++|+|||+.| . +..+ +.+++
T Consensus 309 ~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l 388 (723)
T 1xfd_A 309 EEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQL 388 (723)
T ss_dssp CCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEE
T ss_pred CCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEE
Confidence 37899999997765 44566 577777 344441 4555543444554 6999998655 3 4444 88999
Q ss_pred EEecCC
Q 040361 392 YSIENR 397 (413)
Q Consensus 392 w~~~~~ 397 (413)
|++...
T Consensus 389 ~~~~~~ 394 (723)
T 1xfd_A 389 YSANTV 394 (723)
T ss_dssp EEECSS
T ss_pred EEEeCC
Confidence 999754
No 144
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.91 E-value=1.4e-22 Score=197.56 Aligned_cols=274 Identities=11% Similarity=0.085 Sum_probs=191.1
Q ss_pred cCCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCC-----C
Q 040361 92 TQLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALND-----G 166 (413)
Q Consensus 92 ~~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~-----~ 166 (413)
.+||||+.++++ .++.+.+|+.... . ......+...+..+.|+|+|+.++++. ++.|++|++.+ +
T Consensus 87 ~~~spd~~~~~~--~~~~i~~~d~~~~--~----~~~l~~~~~~~~~~~~SpdG~~la~~~--~~~i~v~~~~~~~~~~g 156 (706)
T 2z3z_A 87 TLDAGRGLVVLF--TQGGLVGFDMLAR--K----VTYLFDTNEETASLDFSPVGDRVAYVR--NHNLYIARGGKLGEGMS 156 (706)
T ss_dssp EEETTTTEEEEE--ETTEEEEEETTTT--E----EEEEECCTTCCTTCEECTTSSEEEEEE--TTEEEEEECBCTTSCCC
T ss_pred EEECCCCeEEEE--ECCEEEEEECCCC--c----eEEccCCcccccCCcCCCCCCEEEEEE--CCeEEEEecCcccccCC
Confidence 458999444454 3488888643211 1 111112234566788999999998853 89999999988 8
Q ss_pred cEEEEeecCCCe--------------EEEEEECCCCCEEEEcc---------------------------------CCCc
Q 040361 167 RVVQSIRQHRDV--------------VSCVAVTTDGSILATGS---------------------------------YDTT 199 (413)
Q Consensus 167 ~~~~~~~~h~~~--------------v~~~~~~~~~~~l~s~s---------------------------------~dg~ 199 (413)
+.......+... +.+++|+|||++|++++ .+..
T Consensus 157 ~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~ 236 (706)
T 2z3z_A 157 RAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVT 236 (706)
T ss_dssp CCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEE
T ss_pred CcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeE
Confidence 776655444332 48899999999999987 3467
Q ss_pred EEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCC-----cEEEEEccCCe
Q 040361 200 VMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDG-----TCVFHTLREGR 274 (413)
Q Consensus 200 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg-----~i~vwd~~~~~ 274 (413)
|.+||+.+++.. .+.....|...+.+++|+||++.|++++.++ .|++||+.+++
T Consensus 237 l~~~d~~~~~~~---------------------~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~ 295 (706)
T 2z3z_A 237 VGIYHLATGKTV---------------------YLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGR 295 (706)
T ss_dssp EEEEETTTTEEE---------------------ECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCC
T ss_pred EEEEECCCCceE---------------------eeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCc
Confidence 888988766510 0111125677899999999999999887775 89999999984
Q ss_pred EEEEEe-CCCC---CceeeEEEcc--CCcEEEEECCCCeEEEEEeC--Cceeeee-ecCCceeE-EEecCCCCEEEEe-C
Q 040361 275 YVRSLC-HPSG---SALSKLAASR--HGRIVLYGDDDLSLHLFSIN--GKHLASS-ESNGRLNC-LELSACGQFLVCG-G 343 (413)
Q Consensus 275 ~~~~~~-~~~~---~~v~~~~~~~--~~~~l~~~~~d~~i~i~d~~--~~~~~~~-~~~~~i~~-~~~s~~~~~l~~~-~ 343 (413)
....+. .... ..+..++|+| +|++++++..++.+++|+++ +..+... .+...+.. ++|+|+|+.|+.+ .
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~ 375 (706)
T 2z3z_A 296 FVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFEST 375 (706)
T ss_dssp EEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEES
T ss_pred eeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEec
Confidence 333332 2111 1246789999 99999999999988888775 4444433 34555666 7999999877654 4
Q ss_pred CCC----eEEEEECCCCceEEEecCCCCcEEEEEEccCCeEEE-E-cCC---CeEEEEEecCCc
Q 040361 344 DQG----QIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFLA-G-TKD---GCLLVYSIENRR 398 (413)
Q Consensus 344 ~dg----~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~-~~d---g~i~vw~~~~~~ 398 (413)
.++ .|+.||+.+++ ...+. +...+.+++|+|||++++ . +.+ +.|++||+++++
T Consensus 376 ~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 376 EASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp SSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred CCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 444 67778887765 34444 667799999999986553 3 333 569999998875
No 145
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.91 E-value=6.1e-22 Score=176.17 Aligned_cols=269 Identities=10% Similarity=0.032 Sum_probs=187.3
Q ss_pred CCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecc--eeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEE
Q 040361 93 QLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGS--QCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQ 170 (413)
Q Consensus 93 ~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~ 170 (413)
++++++.++++++.++.+.+|+.... + ....+..+. .+..+.++|+++.+++++..++.|.+||+.+++...
T Consensus 6 ~~~~~~~~~v~~~~~~~v~~~d~~~~--~----~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~ 79 (349)
T 1jmx_B 6 ALKAGHEYMIVTNYPNNLHVVDVASD--T----VYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTF 79 (349)
T ss_dssp CCCTTCEEEEEEETTTEEEEEETTTT--E----EEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred cccCCCEEEEEeCCCCeEEEEECCCC--c----EEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEE
Confidence 45677777788888888877542111 1 111122223 456788999999888877778999999999999887
Q ss_pred EeecCC------CeEEEEEECCCCCEEEEccCC------------CcEEEEEeccccccccccccceeecCCCceeeecC
Q 040361 171 SIRQHR------DVVSCVAVTTDGSILATGSYD------------TTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVET 232 (413)
Q Consensus 171 ~~~~h~------~~v~~~~~~~~~~~l~s~s~d------------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (413)
.+..+. ..+..++|+|||++|++++.+ +.|.+||+.+++.. .
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~--------------------~ 139 (349)
T 1jmx_B 80 HANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA--------------------K 139 (349)
T ss_dssp EEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB--------------------C
T ss_pred EEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccc--------------------c
Confidence 776432 237889999999999999866 89999999875411 0
Q ss_pred ceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCC-----------------------ceee
Q 040361 233 PFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGS-----------------------ALSK 289 (413)
Q Consensus 233 ~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-----------------------~v~~ 289 (413)
.+..+. +...+.+++|+|+++ +++++. .|.+||+.+++.+..+...... ....
T Consensus 140 ~~~~~~-~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (349)
T 1jmx_B 140 PVRTFP-MPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYT 215 (349)
T ss_dssp CSEEEE-CCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEE
T ss_pred eeeecc-CCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeee
Confidence 122232 344688999999999 555543 4999999999888777543200 2233
Q ss_pred EEEccCCc-----------EEEEECCCCeEEEEEeCCceeeeeecCCceeEEEecC-CCCEEEEeCCCCeEEEEECCCCc
Q 040361 290 LAASRHGR-----------IVLYGDDDLSLHLFSINGKHLASSESNGRLNCLELSA-CGQFLVCGGDQGQIVVRSMNSLE 357 (413)
Q Consensus 290 ~~~~~~~~-----------~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~v~d~~~~~ 357 (413)
+++++++. ++.....++.+.+|++. .....+..++|+| ++++++++ ++.|++||+.+++
T Consensus 216 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~ 286 (349)
T 1jmx_B 216 IARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFA-------DLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRK 286 (349)
T ss_dssp EEEC-------CCCEEEEEEEEEETTTCCEEEEEEE-------ECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTE
T ss_pred eeecCCCcCCccccccceeEEEEeccCCcEEecccc-------cCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCe
Confidence 55554331 12233344455555542 2455788999999 99999988 8899999999999
Q ss_pred eEEEecCCCCcEEEEEEccCCe-EEEEcCCCeEEEEEecCCcccc
Q 040361 358 VVRRYSGVGKIITSLAVTPEEC-FLAGTKDGCLLVYSIENRRTSL 401 (413)
Q Consensus 358 ~~~~~~~~~~~v~~~~~~~~~~-~l~~~~dg~i~vw~~~~~~~~~ 401 (413)
.+..+.. ...+.+++|+|++. +++++.++.|.+||+++++...
T Consensus 287 ~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~ 330 (349)
T 1jmx_B 287 LIKAANL-DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVK 330 (349)
T ss_dssp EEEEEEC-SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEE
T ss_pred EEEEEcC-CCCccceEECCCCCEEEEecCCCeEEEEeccccceee
Confidence 8887763 34577999999975 5567888999999998876543
No 146
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.91 E-value=5.6e-23 Score=201.02 Aligned_cols=295 Identities=12% Similarity=0.039 Sum_probs=192.4
Q ss_pred CCCCCeEEEEeecCCcEEEEecCceEEEEEee----------ccCCCCCCceeeecCCC---------CccccCCCcCCC
Q 040361 59 RHQPSGIVYVGMLDSSIVLVNQGLTLSVKMWL----------TTQLQSGGNFTFSGSQD---------PFFGVGADILSP 119 (413)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~s~~~~~l~~~~~d---------~~~~~~~~~~~~ 119 (413)
+.+++.+++. ..++.+.+|+........+.. ...|||||+++++++.+ +.+.+|+.....
T Consensus 24 ~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~ 102 (723)
T 1xfd_A 24 WISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGD 102 (723)
T ss_dssp BSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCC
T ss_pred EcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCc
Confidence 4455554444 467788888865543333332 23589999999988765 445565322111
Q ss_pred cccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeE------------------EE
Q 040361 120 RNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVV------------------SC 181 (413)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v------------------~~ 181 (413)
. ..+.....+...+..+.|+|+|+.+++++ ++.|++||+.+++.......+...+ .+
T Consensus 103 --~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~--~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~ 177 (723)
T 1xfd_A 103 --P-QSLDPPEVSNAKLQYAGWGPKGQQLIFIF--ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIA 177 (723)
T ss_dssp --C-EECCCTTCCSCCCSBCCBCSSTTCEEEEE--TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEE
T ss_pred --e-EeccCCccccccccccEECCCCCEEEEEE--CCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcce
Confidence 1 11111112223367788999999999866 5899999999988877666544333 78
Q ss_pred EEECCCCCEEEEccCCC----------------------------------cEEEEEeccccccccccccceeecCCCce
Q 040361 182 VAVTTDGSILATGSYDT----------------------------------TVMVWEVIRARAPEKRVRNMQIEAPRKDY 227 (413)
Q Consensus 182 ~~~~~~~~~l~s~s~dg----------------------------------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 227 (413)
++|+|||++|++++.|+ .|++||+.+++
T Consensus 178 ~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~------------------ 239 (723)
T 1xfd_A 178 HWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPT------------------ 239 (723)
T ss_dssp EEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSC------------------
T ss_pred EEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCc------------------
Confidence 99999999999987653 45555554443
Q ss_pred eeecCceeeeec------CCCCeEEEEEecCCCEEEEeeC----CCcEEEEEccCCeEEEEEeCCCCCce----eeEEEc
Q 040361 228 VIVETPFHILCG------HDDIITCLYVSVELDIVISGSK----DGTCVFHTLREGRYVRSLCHPSGSAL----SKLAAS 293 (413)
Q Consensus 228 ~~~~~~~~~~~~------h~~~i~~~~~~~~~~~l~s~~~----dg~i~vwd~~~~~~~~~~~~~~~~~v----~~~~~~ 293 (413)
....+.. +...+..++|+||++++++... +..|++||+.+++....+..++...+ ..++|+
T Consensus 240 -----~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~s 314 (723)
T 1xfd_A 240 -----HDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFS 314 (723)
T ss_dssp -----CCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEEC
T ss_pred -----eeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEc
Confidence 1223333 3667899999999998876643 35799999999987766543322233 378999
Q ss_pred cCCcEEEE--ECCCC------eEEEEE-eCCce---eeee-ecCCceeE-EEecCCCCEEEEeCC-C--CeEEEEECCCC
Q 040361 294 RHGRIVLY--GDDDL------SLHLFS-INGKH---LASS-ESNGRLNC-LELSACGQFLVCGGD-Q--GQIVVRSMNSL 356 (413)
Q Consensus 294 ~~~~~l~~--~~~d~------~i~i~d-~~~~~---~~~~-~~~~~i~~-~~~s~~~~~l~~~~~-d--g~i~v~d~~~~ 356 (413)
|+|+.|+. +..++ .|++|| ..+.. .... .....+.. ++|+|+|+.|+..+. + +.+++|++...
T Consensus 315 pdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~ 394 (723)
T 1xfd_A 315 KDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTV 394 (723)
T ss_dssp TTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSS
T ss_pred CCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCC
Confidence 99997765 44566 577777 34433 3332 22334444 699999999876544 4 78999998643
Q ss_pred c--eEEEecC---CCCcEEEEEEccCCeEEE
Q 040361 357 E--VVRRYSG---VGKIITSLAVTPEECFLA 382 (413)
Q Consensus 357 ~--~~~~~~~---~~~~v~~~~~~~~~~~l~ 382 (413)
. ....+.. |...+..++|+|||++++
T Consensus 395 ~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~ 425 (723)
T 1xfd_A 395 GNFNRQCLSCDLVENCTYFSASFSHSMDFFL 425 (723)
T ss_dssp TTCCCBCSSTTSSSSCCCCEEEECTTSSEEE
T ss_pred CCCCcceecccccCCCCeEEEEECCCCCEEE
Confidence 2 3334443 567788999999987554
No 147
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.90 E-value=1.1e-22 Score=206.23 Aligned_cols=246 Identities=11% Similarity=0.126 Sum_probs=181.3
Q ss_pred cceeEEEEecCCCCEEEEeecCCCeEEEEEcCC-CcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEecccccc
Q 040361 133 GSQCFTTMQTPSENFLITCGNWENSFQVIALND-GRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAP 211 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~ 211 (413)
...+....|+++ .+++++..|+.+.||.+.. +.....+..|. .+..++|+|||++|+++ .++.|.+|++....
T Consensus 203 ~~~v~~~~~s~d--~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~-- 276 (1045)
T 1k32_A 203 STHVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEK-- 276 (1045)
T ss_dssp SSCCEEEEEETT--EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTTCC--
T ss_pred CCcccceEEeCC--EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCceE--
Confidence 344556667666 6666666688888997653 44455666555 35677999999999887 48999999983322
Q ss_pred ccccccceeecCCCceeeecCceeeeecCCCCeEEEEEe-cCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeE
Q 040361 212 EKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVS-VELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKL 290 (413)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~-~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~ 290 (413)
+..+..... ........|...+.+++|+ |+++.+++++ ++.+.+|++..+.... +..+....+..+
T Consensus 277 ---l~~l~~~~~--------~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~~~~~~~~~~~ 343 (1045)
T 1k32_A 277 ---IEKIEIGDL--------ESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VPEPLRIRYVRR 343 (1045)
T ss_dssp ---EEECCCCCC--------CBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CSCCSCEEEEEE
T ss_pred ---eeeeccCcc--------cccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-ccCCCcceEEee
Confidence 000000000 0001112355678999999 9999998887 8899999998776543 443332278899
Q ss_pred EEccCCcEEEEECCCCeEE-EEEeCCceeee-eecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCc
Q 040361 291 AASRHGRIVLYGDDDLSLH-LFSINGKHLAS-SESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKI 368 (413)
Q Consensus 291 ~~~~~~~~l~~~~~d~~i~-i~d~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~ 368 (413)
+|+ +++.+++++.+..+. +||+.+..... ..+...+..++|+|||++|++++.++.|++||+.+++....+.+|...
T Consensus 344 ~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~ 422 (1045)
T 1k32_A 344 GGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAM 422 (1045)
T ss_dssp CSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSC
T ss_pred eEc-CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCC
Confidence 999 999999888888888 99998554333 355678999999999999999999999999999999888777788889
Q ss_pred EEEEEEccCCeEEE-EcCC----------CeEEEEEecCCc
Q 040361 369 ITSLAVTPEECFLA-GTKD----------GCLLVYSIENRR 398 (413)
Q Consensus 369 v~~~~~~~~~~~l~-~~~d----------g~i~vw~~~~~~ 398 (413)
+.+++|+|||++++ ++.+ +.|++||+.+++
T Consensus 423 v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~ 463 (1045)
T 1k32_A 423 ITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK 463 (1045)
T ss_dssp CCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred ccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc
Confidence 99999999997664 4443 489999998865
No 148
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.90 E-value=2.7e-21 Score=171.09 Aligned_cols=265 Identities=11% Similarity=0.041 Sum_probs=188.9
Q ss_pred eEEEEeecCCcEEEEecCceEEEEEee---------ccCCCCCCcee-eecCCCCccccCCCcCCCcccCCCCccccee-
Q 040361 64 GIVYVGMLDSSIVLVNQGLTLSVKMWL---------TTQLQSGGNFT-FSGSQDPFFGVGADILSPRNVGSPLAESFEL- 132 (413)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~s~~~~~l-~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~- 132 (413)
.+++++..++.+.+|+.......+.+. ...++|+|+.+ +++..++.+.+++..... ....+..
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~------~~~~~~~~ 75 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGE------TLGRIDLS 75 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCC------EEEEEECC
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCC------eEeeEEcC
Confidence 456777888999999876554444432 12479999765 556667888886421111 1111111
Q ss_pred -----cceeEEEEecCCCCEEEEeec-----------CCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccC
Q 040361 133 -----GSQCFTTMQTPSENFLITCGN-----------WENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSY 196 (413)
Q Consensus 133 -----~~~~~~~~~~~~~~~l~~~g~-----------~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~ 196 (413)
...+..+.++|+++.++++.. .++.|.+||+.+++....+.. ...+.+++|+|++++|+++
T Consensus 76 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~-- 152 (337)
T 1pby_B 76 TPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL-- 152 (337)
T ss_dssp BTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--
T ss_pred CcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--
Confidence 225567889999998888641 379999999999988887764 4567889999999988887
Q ss_pred CCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCC--CCeEEEEEecCCCEEEEeeCCC-----------
Q 040361 197 DTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHD--DIITCLYVSVELDIVISGSKDG----------- 263 (413)
Q Consensus 197 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~i~~~~~~~~~~~l~s~~~dg----------- 263 (413)
++.|.+||+.+++ ....+..+. .+ +.|+|++..++..+.++
T Consensus 153 ~~~i~~~d~~~~~-----------------------~~~~~~~~~~~~~---~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 206 (337)
T 1pby_B 153 GRDLHVMDPEAGT-----------------------LVEDKPIQSWEAE---TYAQPDVLAVWNQHESSGVMATPFYTAR 206 (337)
T ss_dssp SSSEEEEETTTTE-----------------------EEEEECSTTTTTT---TBCCCBCCCCCCCCTTTTEEEEEEEEEB
T ss_pred CCeEEEEECCCCc-----------------------EeeeeeccccCCC---ceeCCCccEEeeeccCCCceeeeeeccc
Confidence 6889999998776 223333222 22 26778877655443322
Q ss_pred -------------cEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCc-eeeeeecCCceeE
Q 040361 264 -------------TCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGK-HLASSESNGRLNC 329 (413)
Q Consensus 264 -------------~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~i~~ 329 (413)
.|.+||+.+++....-.......+..++|+|++++++++ ++.|++||++.. .+........+.+
T Consensus 207 ~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~ 284 (337)
T 1pby_B 207 KDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYS 284 (337)
T ss_dssp TTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCE
T ss_pred cccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCceee
Confidence 468999998877521112223467889999999999888 789999999854 4444555667899
Q ss_pred EEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCC
Q 040361 330 LELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGV 365 (413)
Q Consensus 330 ~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~ 365 (413)
++|+|+|++|++++.++.|++||+.+++.+..+..+
T Consensus 285 ~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~ 320 (337)
T 1pby_B 285 VNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp EEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred EEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcC
Confidence 999999999999999999999999999988887644
No 149
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.90 E-value=3.9e-22 Score=194.48 Aligned_cols=251 Identities=12% Similarity=0.087 Sum_probs=178.9
Q ss_pred ceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEecc-----c
Q 040361 134 SQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIR-----A 208 (413)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~-----~ 208 (413)
..+..+.|+|+ +.++++. ++.|++||+.+++... +..+...+.+++|+|||++|+++ .|+.|++|++.+ +
T Consensus 82 ~~v~~~~~spd-~~~~~~~--~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g 156 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT--QGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMS 156 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE--TTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCC
T ss_pred cCceeEEECCC-CeEEEEE--CCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCC
Confidence 45788999999 7777754 7999999998887654 44567788999999999999995 689999999987 5
Q ss_pred cccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEee----------------------------
Q 040361 209 RAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGS---------------------------- 260 (413)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~---------------------------- 260 (413)
+.... .. . ....+....+ ....+...+.+++|+||+++|++++
T Consensus 157 ~~~~~-~~---~---~~~~~~~g~~--~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~ 227 (706)
T 2z3z_A 157 RAIAV-TI---D---GTETLVYGQA--VHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPM 227 (706)
T ss_dssp CCEES-CS---C---CBTTEEESSC--CGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCB
T ss_pred CcEEe-cc---C---CCCCeEcccc--hhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCC
Confidence 41100 00 0 0000000000 1112233468899999999999887
Q ss_pred -----CCCcEEEEEccCCeEEEEEeC-CCCCceeeEEEccCCcEEEEECCCC-----eEEEEEeCCc-eeeee---ecCC
Q 040361 261 -----KDGTCVFHTLREGRYVRSLCH-PSGSALSKLAASRHGRIVLYGDDDL-----SLHLFSINGK-HLASS---ESNG 325 (413)
Q Consensus 261 -----~dg~i~vwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~-~~~~~---~~~~ 325 (413)
.+..|++||+.+++....... .+...+..++|+|+|+.|++++.++ .|++||+.+. ..... ....
T Consensus 228 ~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~ 307 (706)
T 2z3z_A 228 AGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKH 307 (706)
T ss_dssp TTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSS
T ss_pred CCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCC
Confidence 446799999998876544322 2345789999999999998877665 8999999854 43322 2222
Q ss_pred ---ceeEEEecC--CCCEEEEeCCCCeEEEEECC-CCceEEEecCCCCcEEE-EEEccCCeEE-E-EcCCC----eEEEE
Q 040361 326 ---RLNCLELSA--CGQFLVCGGDQGQIVVRSMN-SLEVVRRYSGVGKIITS-LAVTPEECFL-A-GTKDG----CLLVY 392 (413)
Q Consensus 326 ---~i~~~~~s~--~~~~l~~~~~dg~i~v~d~~-~~~~~~~~~~~~~~v~~-~~~~~~~~~l-~-~~~dg----~i~vw 392 (413)
.+..++|+| +|+++++++.+|.++||++. ++..+..+..+...+.+ ++|+|+++.+ . +..++ .|+.|
T Consensus 308 ~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~ 387 (706)
T 2z3z_A 308 YVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCI 387 (706)
T ss_dssp CCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEE
T ss_pred eECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEE
Confidence 246789999 99999999999999999876 66777888878777877 7999998543 3 55554 67777
Q ss_pred EecCCc
Q 040361 393 SIENRR 398 (413)
Q Consensus 393 ~~~~~~ 398 (413)
++.+++
T Consensus 388 d~~~~~ 393 (706)
T 2z3z_A 388 DIKGGK 393 (706)
T ss_dssp ETTCCC
T ss_pred EcCCCC
Confidence 776654
No 150
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.89 E-value=5.2e-22 Score=189.14 Aligned_cols=230 Identities=11% Similarity=0.069 Sum_probs=174.3
Q ss_pred cceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCC-CeEEEEEECCCCCEEEEccC---CCcEEEEEecc-
Q 040361 133 GSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHR-DVVSCVAVTTDGSILATGSY---DTTVMVWEVIR- 207 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~s~---dg~i~iw~~~~- 207 (413)
...+..+.++|||+.+++++..||+++||++.+++.. .+..|. ..+..++|+|| +.+++++. +....+|.+..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence 3458899999999999998777999999999666554 454555 68999999999 77777665 56677877755
Q ss_pred -ccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCC--EEEEeeCCCcEEEEEccCCeEEEEEeCCCC
Q 040361 208 -ARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELD--IVISGSKDGTCVFHTLREGRYVRSLCHPSG 284 (413)
Q Consensus 208 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 284 (413)
... ...+... ..+...+|+|+++ .+++++ ++.+.+||+.+++.......+.
T Consensus 99 ~~g~-----------------------~~~l~~~-~~~~~~~~s~dg~~~~~~s~~-~~~~~l~d~~~g~~~~l~~~~~- 152 (582)
T 3o4h_A 99 RPGE-----------------------EQRLEAV-KPMRILSGVDTGEAVVFTGAT-EDRVALYALDGGGLRELARLPG- 152 (582)
T ss_dssp STTC-----------------------CEECTTS-CSBEEEEEEECSSCEEEEEEC-SSCEEEEEEETTEEEEEEEESS-
T ss_pred CCCc-----------------------cccccCC-CCceeeeeCCCCCeEEEEecC-CCCceEEEccCCcEEEeecCCC-
Confidence 221 1122212 2234668888875 344444 4455599999987765554332
Q ss_pred CceeeEEEccCCcEEEEECCC----CeEEEEEeCCceee-eeecCCceeEEEecCCCCEEEEeCCCC--eEEEEECCCCc
Q 040361 285 SALSKLAASRHGRIVLYGDDD----LSLHLFSINGKHLA-SSESNGRLNCLELSACGQFLVCGGDQG--QIVVRSMNSLE 357 (413)
Q Consensus 285 ~~v~~~~~~~~~~~l~~~~~d----~~i~i~d~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~dg--~i~v~d~~~~~ 357 (413)
.+++|+|||+.|++++.+ +.|++||+.+.... ...+.+.+..++|+|||++|+++..++ .|++||+.+++
T Consensus 153 ---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~ 229 (582)
T 3o4h_A 153 ---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGS 229 (582)
T ss_dssp ---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCC
T ss_pred ---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCc
Confidence 789999999999987766 78999998844443 345677889999999999999888888 89999999988
Q ss_pred eEEEecCCCCcEEEEE--------EccCCeEE-EEcCCCeEEEEEe
Q 040361 358 VVRRYSGVGKIITSLA--------VTPEECFL-AGTKDGCLLVYSI 394 (413)
Q Consensus 358 ~~~~~~~~~~~v~~~~--------~~~~~~~l-~~~~dg~i~vw~~ 394 (413)
.. .+..|...+..++ |+|||.++ +++.|+.+++|++
T Consensus 230 ~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 230 VE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp EE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred EE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 87 7777777777777 99999766 5889999999999
No 151
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.89 E-value=6.1e-22 Score=200.83 Aligned_cols=265 Identities=11% Similarity=0.063 Sum_probs=201.1
Q ss_pred CCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEee
Q 040361 94 LQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIR 173 (413)
Q Consensus 94 ~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~ 173 (413)
|+++ .++++++.|+...+|........ . ..+..+.......|+|+|+.++++. ++.|++|++...+. ..+.
T Consensus 211 ~s~d-~l~~~~~~dg~~~l~~~~~~g~~----~-~~l~~~~~~~~~~~SpDG~~la~~~--~~~i~~~d~~~~~l-~~l~ 281 (1045)
T 1k32_A 211 IVGH-RIYFITDIDGFGQIYSTDLDGKD----L-RKHTSFTDYYPRHLNTDGRRILFSK--GGSIYIFNPDTEKI-EKIE 281 (1045)
T ss_dssp EETT-EEEEEECTTSSCEEEEEETTSCS----C-EECCCCCSSCEEEEEESSSCEEEEE--TTEEEEECTTTCCE-EECC
T ss_pred EeCC-EEEEEEeccCceEEEEEeCCCCc----c-eEecCCCCcceeeEcCCCCEEEEEe--CCEEEEecCCceEe-eeec
Confidence 4565 66678888888888742221111 1 1111122344568899999888753 89999999954444 3555
Q ss_pred c-----------CCCeEEEEEEC-CCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCC
Q 040361 174 Q-----------HRDVVSCVAVT-TDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHD 241 (413)
Q Consensus 174 ~-----------h~~~v~~~~~~-~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 241 (413)
. |...+.+++|+ |||++|++++ ++.|.+|++..+. ...+..|.
T Consensus 282 ~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~------------------------~~~~~~~~ 336 (1045)
T 1k32_A 282 IGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTY------------------------VLKVPEPL 336 (1045)
T ss_dssp CCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSB------------------------EEECSCCS
T ss_pred cCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCc------------------------eEEccCCC
Confidence 4 34578999999 9999999887 7899999987654 33455677
Q ss_pred C-CeEEEEEecCCCEEEEeeCCCcEE-EEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCceee
Q 040361 242 D-IITCLYVSVELDIVISGSKDGTCV-FHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKHLA 319 (413)
Q Consensus 242 ~-~i~~~~~~~~~~~l~s~~~dg~i~-vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 319 (413)
. .+..++|+ +++.++.++.++.+. +||+..++.. .+. .+...+..++|+|+|+.|++++.++.|++||+.+....
T Consensus 337 ~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~-~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~ 413 (1045)
T 1k32_A 337 RIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFE-ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPT 413 (1045)
T ss_dssp CEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECC-CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred cceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-Eec-CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceE
Confidence 7 89999999 999999988888888 9999877654 343 33467899999999999999999999999999854433
Q ss_pred -ee-ecCCceeEEEecCCCCEEEEeCCCC----------eEEEEECCCCceEEEecCCCCcEEEEEEccCCeEE-EEcCC
Q 040361 320 -SS-ESNGRLNCLELSACGQFLVCGGDQG----------QIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFL-AGTKD 386 (413)
Q Consensus 320 -~~-~~~~~i~~~~~s~~~~~l~~~~~dg----------~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~d 386 (413)
.. .+...+.+++|+|||++|++++.++ .|++||+.+++ +..+..|...+.+++|+|||+.+ .++.+
T Consensus 414 ~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~ 492 (1045)
T 1k32_A 414 VIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYR 492 (1045)
T ss_dssp EEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESC
T ss_pred EeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecc
Confidence 33 5777889999999999998887644 89999999887 66777888889999999998755 57777
Q ss_pred CeEEEEEecC
Q 040361 387 GCLLVYSIEN 396 (413)
Q Consensus 387 g~i~vw~~~~ 396 (413)
+...+|+...
T Consensus 493 ~~~~~~~~~~ 502 (1045)
T 1k32_A 493 SLDPSPDRVV 502 (1045)
T ss_dssp CCCCEECSSS
T ss_pred cCCcCcchhc
Confidence 7777777543
No 152
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.89 E-value=6.7e-22 Score=180.49 Aligned_cols=226 Identities=12% Similarity=0.084 Sum_probs=161.8
Q ss_pred CeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCcee
Q 040361 156 NSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFH 235 (413)
Q Consensus 156 ~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (413)
+.+++|+... . .....++.+++++++.++++++.|+ +++|+........... .............
T Consensus 23 ~~vri~~~~~-~------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 87 (434)
T 2oit_A 23 KKVRIFDSPE-E------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPG-------DDPNKIVDKVQGL 87 (434)
T ss_dssp CEEECSCCCS-S------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTT-------CCTTCEEECCCCE
T ss_pred eeEEecCCcc-c------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccc-------cCcccccccCccc
Confidence 4677775421 1 2345678999999999999999888 8998875432110000 0000000001111
Q ss_pred eeecCCCCeEEEEEecCCCEEE----EeeCCCcEEEEEccCC--------eEEEEEe--CCCCCceeeEEEccC-CcEEE
Q 040361 236 ILCGHDDIITCLYVSVELDIVI----SGSKDGTCVFHTLREG--------RYVRSLC--HPSGSALSKLAASRH-GRIVL 300 (413)
Q Consensus 236 ~~~~h~~~i~~~~~~~~~~~l~----s~~~dg~i~vwd~~~~--------~~~~~~~--~~~~~~v~~~~~~~~-~~~l~ 300 (413)
...+...|.+++|+|++++|+ +|+.|+.|++||++++ +.+..+. ..+...|.+++|+|+ +.+|+
T Consensus 88 -~~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~la 166 (434)
T 2oit_A 88 -LVPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVA 166 (434)
T ss_dssp -EECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEE
T ss_pred -cccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEE
Confidence 234677899999999999999 8899999999998765 2222222 223568999999997 89999
Q ss_pred EECCCCeEEEEEeCCceee--eeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCC-------CcEEE
Q 040361 301 YGDDDLSLHLFSINGKHLA--SSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVG-------KIITS 371 (413)
Q Consensus 301 ~~~~d~~i~i~d~~~~~~~--~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-------~~v~~ 371 (413)
+++.|++|++||++..... ...|...+.+++|+|+|++|++|+.||.|++||.+ ++....+..|. ..|.+
T Consensus 167 s~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~ 245 (434)
T 2oit_A 167 VCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLD 245 (434)
T ss_dssp EEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEE
T ss_pred EEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEE
Confidence 9999999999999854332 24567889999999999999999999999999998 56666555432 37999
Q ss_pred EEEccCCeEEE--EcCCC------eEEEEEecCCc
Q 040361 372 LAVTPEECFLA--GTKDG------CLLVYSIENRR 398 (413)
Q Consensus 372 ~~~~~~~~~l~--~~~dg------~i~vw~~~~~~ 398 (413)
+.|++++.+++ ...|| .+++|++.+.+
T Consensus 246 v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~ 280 (434)
T 2oit_A 246 VLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKE 280 (434)
T ss_dssp EEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTT
T ss_pred EEEecCceEEEEEccCCCccCCCCceEEEEeccCC
Confidence 99999988774 33443 38999998754
No 153
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.89 E-value=6.6e-20 Score=163.95 Aligned_cols=252 Identities=9% Similarity=0.124 Sum_probs=166.4
Q ss_pred cceeEEEEecCCCCEEEEeec---CCCeEEEEEcCC--CcE--EEEeecCCCeEEEEEECCCCCEEEEcc-CCCcEEEEE
Q 040361 133 GSQCFTTMQTPSENFLITCGN---WENSFQVIALND--GRV--VQSIRQHRDVVSCVAVTTDGSILATGS-YDTTVMVWE 204 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~g~---~d~~i~i~~~~~--~~~--~~~~~~h~~~v~~~~~~~~~~~l~s~s-~dg~i~iw~ 204 (413)
......++++|+++.+++++. .++.|.+|++.. ++. +.....+......+++ ++++|++++ .++.|.+|+
T Consensus 49 ~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~ 126 (361)
T 3scy_A 49 VANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFP 126 (361)
T ss_dssp CSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEE
T ss_pred CCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEE
Confidence 344455788999998888765 237999998865 443 3344445667778888 788777765 578999999
Q ss_pred eccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEee-CCCcEEEEEccCCeE------E-
Q 040361 205 VIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGS-KDGTCVFHTLREGRY------V- 276 (413)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~------~- 276 (413)
+................ . ........+...+.+++|+|+++++++++ .++.|.+|++..... +
T Consensus 127 ~~~~g~~~~~~~~~~~~-g--------~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~ 197 (361)
T 3scy_A 127 IGQDGALLPASDVIEFK-G--------SGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFL 197 (361)
T ss_dssp BCTTSCBCSCSEEEECC-C--------CCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCE
T ss_pred eCCCCcCcccceeEEcc-C--------CCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCccccccee
Confidence 97543211110000000 0 00000011233468899999999665554 588999999875431 1
Q ss_pred -----EEEeCCCCCceeeEEEccCCcEEEEEC-CCCeEEEEEeCCceeee---e----ecCCceeEEEecCCCCEEEEeC
Q 040361 277 -----RSLCHPSGSALSKLAASRHGRIVLYGD-DDLSLHLFSINGKHLAS---S----ESNGRLNCLELSACGQFLVCGG 343 (413)
Q Consensus 277 -----~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~---~----~~~~~i~~~~~s~~~~~l~~~~ 343 (413)
.......+..+..++|+|+++++++++ .++.|.+|+++...+.. . .+......++|+|||++|+++.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~ 277 (361)
T 3scy_A 198 TKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASN 277 (361)
T ss_dssp EEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEE
T ss_pred ecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEEC
Confidence 233334455688999999999877666 68999999997443321 1 1223467999999999987665
Q ss_pred C--CCeEEEEECC--CCc--eEEEecCCCCcEEEEEEccCCeEE-EE-cCCCeEEEEEecC
Q 040361 344 D--QGQIVVRSMN--SLE--VVRRYSGVGKIITSLAVTPEECFL-AG-TKDGCLLVYSIEN 396 (413)
Q Consensus 344 ~--dg~i~v~d~~--~~~--~~~~~~~~~~~v~~~~~~~~~~~l-~~-~~dg~i~vw~~~~ 396 (413)
. ++.|.+|++. +++ .+..+.. ...+.+++|+|||++| ++ ..++.|.+|+++.
T Consensus 278 ~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~ 337 (361)
T 3scy_A 278 RLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQ 337 (361)
T ss_dssp CSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECT
T ss_pred CCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEEC
Confidence 5 4899999986 444 4445554 5578899999998755 44 4789999977653
No 154
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.88 E-value=3.5e-21 Score=175.77 Aligned_cols=206 Identities=11% Similarity=0.095 Sum_probs=149.7
Q ss_pred eEEEEecCCCCEEEEeecCCCeEEEEEcCCC----------cEEEE-----eecCCCeEEEEEECCCCCEEE----EccC
Q 040361 136 CFTTMQTPSENFLITCGNWENSFQVIALNDG----------RVVQS-----IRQHRDVVSCVAVTTDGSILA----TGSY 196 (413)
Q Consensus 136 ~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~----------~~~~~-----~~~h~~~v~~~~~~~~~~~l~----s~s~ 196 (413)
+..+++++++..+++++. ++ +++|+.... ..... ...|...|.+++|+|++++|+ +|+.
T Consensus 39 ~n~lavs~~~~~l~~~~~-dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~ 116 (434)
T 2oit_A 39 SSLLAVSNKYGLVFAGGA-SG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEY 116 (434)
T ss_dssp CBCEEEETTTTEEEEEET-TE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTT
T ss_pred ccEEEEecCCCEEEEECC-CE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCC
Confidence 345667888888877554 65 888875310 11111 112567899999999999999 8999
Q ss_pred CCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecC-CCEEEEeeCCCcEEEEEccCCeE
Q 040361 197 DTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVE-LDIVISGSKDGTCVFHTLREGRY 275 (413)
Q Consensus 197 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~ 275 (413)
|+.|++||+.+.......... .......+.+|...|.+++|+|+ +++|++++.||+|++||++++..
T Consensus 117 d~~v~iwd~~~~~~~~~~~~~------------~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~ 184 (434)
T 2oit_A 117 GSIIAFFDVRTFSNEAKQQKR------------PFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK 184 (434)
T ss_dssp EEEEEEEEHHHHHCTTCSSCC------------CSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEE
T ss_pred CceEEEEEccccccCCcCCcc------------eeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcc
Confidence 999999999775210000000 00013456779999999999998 78999999999999999999876
Q ss_pred EEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCceeeee-e-------cCCceeEEEecCCCCEEEEe-CCCC
Q 040361 276 VRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKHLASS-E-------SNGRLNCLELSACGQFLVCG-GDQG 346 (413)
Q Consensus 276 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~-------~~~~i~~~~~s~~~~~l~~~-~~dg 346 (413)
......+ ...+.+++|+|+|++|++|+.|+.|++||+++...... . +...+.+++|++++.++++. ..+|
T Consensus 185 ~~~~~~~-~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg 263 (434)
T 2oit_A 185 VCATLPS-TVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADG 263 (434)
T ss_dssp EEEEECG-GGCEEEEEECTTSSCEEEEETTSCEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTC
T ss_pred eeeccCC-CCceeEEEEcCCCCEEEEEcCCCcEEEEccCCcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCC
Confidence 6555543 45899999999999999999999999999985443322 1 12378999999988877543 3333
Q ss_pred ------eEEEEECCCC
Q 040361 347 ------QIVVRSMNSL 356 (413)
Q Consensus 347 ------~i~v~d~~~~ 356 (413)
.+++|++...
T Consensus 264 ~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 264 TLETSPDVVMALLPKK 279 (434)
T ss_dssp CSSSCCEEEEEECCCT
T ss_pred ccCCCCceEEEEeccC
Confidence 4899999864
No 155
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.87 E-value=5.5e-21 Score=172.72 Aligned_cols=275 Identities=9% Similarity=0.004 Sum_probs=179.9
Q ss_pred ccCCCCCCceeeecCC-CCccccCCCcCCCcccCCCCccccee-cceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcE
Q 040361 91 TTQLQSGGNFTFSGSQ-DPFFGVGADILSPRNVGSPLAESFEL-GSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRV 168 (413)
Q Consensus 91 ~~~~s~~~~~l~~~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~ 168 (413)
...|||||+.|+.++. ++...+|.......... ..... ...+....|+|+++.|+++.. ++.|++||+.+++.
T Consensus 40 ~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~----~lt~~~~~~~~~~~~spdg~~l~~~~~-~~~l~~~d~~~g~~ 114 (388)
T 3pe7_A 40 QKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVAT----QLTEGRGDNTFGGFLSPDDDALFYVKD-GRNLMRVDLATLEE 114 (388)
T ss_dssp SCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEE----ECCCSSCBCSSSCEECTTSSEEEEEET-TTEEEEEETTTCCE
T ss_pred CccCCCCCCEEEEEEcCCCCceEEEEeCCCCceE----EeeeCCCCCccceEEcCCCCEEEEEeC-CCeEEEEECCCCcc
Confidence 3678999998877766 77655542111111111 11111 222235679999999988665 78999999999988
Q ss_pred EEEeecCCCeEEEEE--ECCCCCEEEE----------------------ccCCCcEEEEEeccccccccccccceeecCC
Q 040361 169 VQSIRQHRDVVSCVA--VTTDGSILAT----------------------GSYDTTVMVWEVIRARAPEKRVRNMQIEAPR 224 (413)
Q Consensus 169 ~~~~~~h~~~v~~~~--~~~~~~~l~s----------------------~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 224 (413)
...+..+...+.... +++++++++. ...+..|.+||+.+++
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~--------------- 179 (388)
T 3pe7_A 115 NVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE--------------- 179 (388)
T ss_dssp EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC---------------
T ss_pred eeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc---------------
Confidence 877777777665444 4899998874 2345678889988765
Q ss_pred CceeeecCceeeeecCCCCeEEEEEec-CCCEEEEeeCC------CcEEEEEccCCeEEEEEeCCCC-CceeeEEEccCC
Q 040361 225 KDYVIVETPFHILCGHDDIITCLYVSV-ELDIVISGSKD------GTCVFHTLREGRYVRSLCHPSG-SALSKLAASRHG 296 (413)
Q Consensus 225 ~~~~~~~~~~~~~~~h~~~i~~~~~~~-~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~ 296 (413)
...+..+...+..++|+| +++.|+.+..+ ..|.++|+..+.. ..+..... ..+...+|+|+|
T Consensus 180 ---------~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg 249 (388)
T 3pe7_A 180 ---------STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDG 249 (388)
T ss_dssp ---------EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTS
T ss_pred ---------eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCC
Confidence 344455677789999999 99988876653 3788888765543 33433222 357788999999
Q ss_pred cEEEEECC-C----CeEEEEEeCCceeeee-ecCCc------eeEEEecCCCCEEEEe---------CCCCeEEEEECCC
Q 040361 297 RIVLYGDD-D----LSLHLFSINGKHLASS-ESNGR------LNCLELSACGQFLVCG---------GDQGQIVVRSMNS 355 (413)
Q Consensus 297 ~~l~~~~~-d----~~i~i~d~~~~~~~~~-~~~~~------i~~~~~s~~~~~l~~~---------~~dg~i~v~d~~~ 355 (413)
+.|+..+. + ..|++||+.+...... ..... .....|+|||+.|+.. ..+..|++||+.+
T Consensus 250 ~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~ 329 (388)
T 3pe7_A 250 SALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKN 329 (388)
T ss_dssp SCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTT
T ss_pred CEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccC
Confidence 97755432 1 2499999985443221 11110 1223799999988754 4566899999998
Q ss_pred CceEEEecCCCC-----------cEEEEEEccCCeEEE--EcCCCeEEEEEecC
Q 040361 356 LEVVRRYSGVGK-----------IITSLAVTPEECFLA--GTKDGCLLVYSIEN 396 (413)
Q Consensus 356 ~~~~~~~~~~~~-----------~v~~~~~~~~~~~l~--~~~dg~i~vw~~~~ 396 (413)
++. ..+..+.. .+.+++|+|||+.++ +..+|...+|.++-
T Consensus 330 ~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l 382 (388)
T 3pe7_A 330 GTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATL 382 (388)
T ss_dssp TEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEEC
T ss_pred Cce-EEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEEC
Confidence 765 44554554 578889999986443 55677777776643
No 156
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.87 E-value=1.2e-19 Score=162.28 Aligned_cols=268 Identities=11% Similarity=0.109 Sum_probs=170.4
Q ss_pred CCCCCCceeeecCCC----CccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcE
Q 040361 93 QLQSGGNFTFSGSQD----PFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRV 168 (413)
Q Consensus 93 ~~s~~~~~l~~~~~d----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~ 168 (413)
.++|+|+++++++.+ +.+.+|......... ..+............+.+ +++.++++...++.|.+|++.....
T Consensus 56 ~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~-~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~ 132 (361)
T 3scy_A 56 IPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTL-HLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGA 132 (361)
T ss_dssp EECTTSSEEEEEECCSSTTCEEEEEEEETTTTEE-EEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSC
T ss_pred EECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcE-EEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCc
Confidence 579999999988876 677776422110111 011111111233444555 8888888887789999999975432
Q ss_pred EEEe------ec--------CCCeEEEEEECCCCCEEEEcc-CCCcEEEEEecccccccc-c-cccceeecCCCceeeec
Q 040361 169 VQSI------RQ--------HRDVVSCVAVTTDGSILATGS-YDTTVMVWEVIRARAPEK-R-VRNMQIEAPRKDYVIVE 231 (413)
Q Consensus 169 ~~~~------~~--------h~~~v~~~~~~~~~~~l~s~s-~dg~i~iw~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~ 231 (413)
+..+ .+ +...+.+++|+|||++|++++ .++.|.+|++........ . +.. ..
T Consensus 133 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~------------~~ 200 (361)
T 3scy_A 133 LLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLT------------KG 200 (361)
T ss_dssp BCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEE------------EE
T ss_pred CcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceee------------cc
Confidence 2111 11 223468899999999766554 588999999976541000 0 000 00
Q ss_pred CceeeeecCCCCeEEEEEecCCCEEEEee-CCCcEEEEEccCCeEE--EEEeCC--CCCceeeEEEccCCcEEEEECC--
Q 040361 232 TPFHILCGHDDIITCLYVSVELDIVISGS-KDGTCVFHTLREGRYV--RSLCHP--SGSALSKLAASRHGRIVLYGDD-- 304 (413)
Q Consensus 232 ~~~~~~~~h~~~i~~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~--~~~~~~--~~~~v~~~~~~~~~~~l~~~~~-- 304 (413)
........+......++|+|+++++++++ .++.|.+||+.+++.. ..+... .......++|+|+|++|+++..
T Consensus 201 ~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~ 280 (361)
T 3scy_A 201 TPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLK 280 (361)
T ss_dssp EEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSS
T ss_pred cccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCC
Confidence 00111223445678999999999877666 6899999999877652 333221 1234679999999998876655
Q ss_pred CCeEEEEEeC---Cc--eeeeeecCCceeEEEecCCCCEEEEeC-CCCeEEEEE--CCCCceEEEec-CCCCcEEEEEEc
Q 040361 305 DLSLHLFSIN---GK--HLASSESNGRLNCLELSACGQFLVCGG-DQGQIVVRS--MNSLEVVRRYS-GVGKIITSLAVT 375 (413)
Q Consensus 305 d~~i~i~d~~---~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~v~d--~~~~~~~~~~~-~~~~~v~~~~~~ 375 (413)
++.|.+|+++ +. .+........+..++|+|+|++|++++ .++.|.+|+ ..+++...... .+...+.|+.|.
T Consensus 281 ~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 281 ADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp SCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred CCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 4899999996 23 122223355788999999999888876 678999964 45666654332 244578888886
No 157
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.86 E-value=1.4e-19 Score=162.07 Aligned_cols=241 Identities=12% Similarity=0.075 Sum_probs=166.4
Q ss_pred eeEEEEecCCCCEEEEeecCCCeEEEEEcC-CCcEEEEeecC-CCeEEEEEECCCCCE--EEEcc-------------CC
Q 040361 135 QCFTTMQTPSENFLITCGNWENSFQVIALN-DGRVVQSIRQH-RDVVSCVAVTTDGSI--LATGS-------------YD 197 (413)
Q Consensus 135 ~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~-~~~~~~~~~~h-~~~v~~~~~~~~~~~--l~s~s-------------~d 197 (413)
.+..++++|++++++++.. + .|.+|++. +++........ .+.+.+++|+|||++ ++++. .+
T Consensus 41 ~~~~~a~spdg~~l~~~~~-~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~ 118 (365)
T 1jof_A 41 PISWMTFDHERKNIYGAAM-K-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFA 118 (365)
T ss_dssp CCSEEEECTTSSEEEEEEB-T-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred CCcEEEECCCCCEEEEEcc-c-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCC
Confidence 3456788999998877554 5 99999997 78765443311 123556899999994 55664 68
Q ss_pred CcEEEEEecc-ccccccccccceeecCCCceeeecCceeeee-cCCCCeEEEEEecCCCEEEEeeC-CCcEEEEEcc-CC
Q 040361 198 TTVMVWEVIR-ARAPEKRVRNMQIEAPRKDYVIVETPFHILC-GHDDIITCLYVSVELDIVISGSK-DGTCVFHTLR-EG 273 (413)
Q Consensus 198 g~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~i~~~~~~~~~~~l~s~~~-dg~i~vwd~~-~~ 273 (413)
+.+.+|++.. ++. .. .+..+. .+...+.+++|+|+++++++++. ++.|.+||+. ++
T Consensus 119 g~v~v~~~~~~g~~-~~-------------------~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g 178 (365)
T 1jof_A 119 GYGNVFSVSETGKL-EK-------------------NVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASG 178 (365)
T ss_dssp CEEEEEEECTTCCE-EE-------------------EEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTS
T ss_pred ceEEEEccCCCCcC-cc-------------------eEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCC
Confidence 9999999974 330 00 111111 24567899999999998877654 6799999998 67
Q ss_pred eEE--EEEeCC-CCCceeeEEEccCCcEEEEEC-CCCeEEEEEeC---Cceee---e---eec-----CC------ceeE
Q 040361 274 RYV--RSLCHP-SGSALSKLAASRHGRIVLYGD-DDLSLHLFSIN---GKHLA---S---SES-----NG------RLNC 329 (413)
Q Consensus 274 ~~~--~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~---~~~~~---~---~~~-----~~------~i~~ 329 (413)
+.. ..+..+ ++..+..++|+|+|+++++++ .++.|.+|+++ ++... . ... .. .+..
T Consensus 179 ~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 258 (365)
T 1jof_A 179 EVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRAD 258 (365)
T ss_dssp CEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEE
T ss_pred CEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCccccccccccccc
Confidence 653 333322 245689999999999887765 47899999875 33211 1 111 11 4789
Q ss_pred EE-ecCCCCEEEEeCCCC------eEEEEECC-CCceEE---EecCCCCcEEEEEEcc---CCeEE-EEcC-CCeEEEEE
Q 040361 330 LE-LSACGQFLVCGGDQG------QIVVRSMN-SLEVVR---RYSGVGKIITSLAVTP---EECFL-AGTK-DGCLLVYS 393 (413)
Q Consensus 330 ~~-~s~~~~~l~~~~~dg------~i~v~d~~-~~~~~~---~~~~~~~~v~~~~~~~---~~~~l-~~~~-dg~i~vw~ 393 (413)
++ |+|||++|++++.+. .|.+|++. +++... ....+...+..++|+| ||++| +++. ++.|.+|+
T Consensus 259 i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~ 338 (365)
T 1jof_A 259 VCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYR 338 (365)
T ss_dssp EEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEE
T ss_pred EEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEE
Confidence 99 999999988765432 89999996 566543 2333455567889999 77655 4554 58999999
Q ss_pred ecCC
Q 040361 394 IENR 397 (413)
Q Consensus 394 ~~~~ 397 (413)
++..
T Consensus 339 ~~~~ 342 (365)
T 1jof_A 339 WKDE 342 (365)
T ss_dssp EETT
T ss_pred Echh
Confidence 9875
No 158
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.86 E-value=2.7e-18 Score=148.23 Aligned_cols=236 Identities=10% Similarity=0.124 Sum_probs=177.7
Q ss_pred ceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEee------cCCCeEEEEEE-CCCCCEEEEccC-CCcEEEEEe
Q 040361 134 SQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIR------QHRDVVSCVAV-TTDGSILATGSY-DTTVMVWEV 205 (413)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~------~h~~~v~~~~~-~~~~~~l~s~s~-dg~i~iw~~ 205 (413)
.....+++.+++..+++ ...++.|.+||.+ ++.+..+. +|...+..+++ .++++.+++... ++.|.+|+
T Consensus 30 ~~p~~v~~~~~g~l~v~-~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d- 106 (286)
T 1q7f_A 30 TEPSGVAVNAQNDIIVA-DTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN- 106 (286)
T ss_dssp SCEEEEEECTTCCEEEE-EGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-
T ss_pred CCCceEEECCCCCEEEE-ECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-
Confidence 34567778888875554 4558999999986 66666664 24467899999 577777766643 88999999
Q ss_pred ccccccccccccceeecCCCceeeecCceeeee-cCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeC-CC
Q 040361 206 IRARAPEKRVRNMQIEAPRKDYVIVETPFHILC-GHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCH-PS 283 (413)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~ 283 (413)
.+++ .+..+. .+...+.+++++++++++++...++.|.+||. .++.+..+.. ..
T Consensus 107 ~~g~-----------------------~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~ 162 (286)
T 1q7f_A 107 QYGQ-----------------------FVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKH 162 (286)
T ss_dssp TTSC-----------------------EEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTT
T ss_pred CCCc-----------------------EEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCc
Confidence 3443 222232 23456889999999998888888899999996 5666666643 22
Q ss_pred CCceeeEEEccCCcEEEEECCCCeEEEEEeCCceeeeeecC---CceeEEEecCCCCEEEEeCCCC-eEEEEECCCCceE
Q 040361 284 GSALSKLAASRHGRIVLYGDDDLSLHLFSINGKHLASSESN---GRLNCLELSACGQFLVCGGDQG-QIVVRSMNSLEVV 359 (413)
Q Consensus 284 ~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~i~~~~~s~~~~~l~~~~~dg-~i~v~d~~~~~~~ 359 (413)
...+..++++++++++++...++.|++||.++..+...... ..+..++++++|+++++...++ .|.+||. +++.+
T Consensus 163 ~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~ 241 (286)
T 1q7f_A 163 LEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLI 241 (286)
T ss_dssp CSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEE
T ss_pred cCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEE
Confidence 34688999999999888888899999999988766655332 5688999999999988888876 9999995 56677
Q ss_pred EEecCCC--CcEEEEEEccCCeEEEEcCCCeEEEEEecCC
Q 040361 360 RRYSGVG--KIITSLAVTPEECFLAGTKDGCLLVYSIENR 397 (413)
Q Consensus 360 ~~~~~~~--~~v~~~~~~~~~~~l~~~~dg~i~vw~~~~~ 397 (413)
..+..+. ..+.+++++|+|++++++.|++|++|++...
T Consensus 242 ~~~~~~~~~~~~~~i~~~~~g~l~vs~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 242 SALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRYVQL 281 (286)
T ss_dssp EEEEESSCCSCEEEEEEETTTEEEEEETTTEEEEEECSCC
T ss_pred EEEcccCCCCcceeEEECCCCcEEEECCCCeEEEEEcccc
Confidence 6665443 3478999999998776677999999998653
No 159
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.86 E-value=2.2e-21 Score=189.59 Aligned_cols=235 Identities=9% Similarity=0.027 Sum_probs=169.9
Q ss_pred EEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCC---eEEEEEECCCCCEEEEccC---------CCcEEEEE
Q 040361 137 FTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRD---VVSCVAVTTDGSILATGSY---------DTTVMVWE 204 (413)
Q Consensus 137 ~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~l~s~s~---------dg~i~iw~ 204 (413)
....|+|+++ +++.+. |+.|++||+.+++....+..|.. .+.+++|+|||++|++++. ++.|++||
T Consensus 19 ~~~~~s~dg~-~~~~~~-d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d 96 (719)
T 1z68_A 19 FFPNWISGQE-YLHQSA-DNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYD 96 (719)
T ss_dssp CCCEESSSSE-EEEECT-TSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred CccEECCCCe-EEEEcC-CCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEE
Confidence 4567899995 454444 99999999999998877776644 3889999999999999876 78999999
Q ss_pred eccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCC
Q 040361 205 VIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSG 284 (413)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 284 (413)
+.+++... ...+ ...+..++|+|||+.|+.+. ++.|++||+.+++..........
T Consensus 97 ~~~g~~~~---------------------~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~ 151 (719)
T 1z68_A 97 LSNGEFVR---------------------GNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRE 151 (719)
T ss_dssp TTTTEECC---------------------SSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBT
T ss_pred CCCCcccc---------------------ceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCc
Confidence 98876100 0111 24578899999999999885 78999999988876543322211
Q ss_pred C-----------------ceeeEEEccCCcEEEEECCCC----------------------------------eEEEEEe
Q 040361 285 S-----------------ALSKLAASRHGRIVLYGDDDL----------------------------------SLHLFSI 313 (413)
Q Consensus 285 ~-----------------~v~~~~~~~~~~~l~~~~~d~----------------------------------~i~i~d~ 313 (413)
. ....++|+|||+.|++++.|. .|++||+
T Consensus 152 ~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~ 231 (719)
T 1z68_A 152 NKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDT 231 (719)
T ss_dssp TTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEES
T ss_pred CCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEEC
Confidence 1 124899999999999887542 7889999
Q ss_pred CCcee----ee------eecCCceeEEEecCCCCEEEEeCCC----CeEEEEE----CCCCceEEEe----cCCCCcEE-
Q 040361 314 NGKHL----AS------SESNGRLNCLELSACGQFLVCGGDQ----GQIVVRS----MNSLEVVRRY----SGVGKIIT- 370 (413)
Q Consensus 314 ~~~~~----~~------~~~~~~i~~~~~s~~~~~l~~~~~d----g~i~v~d----~~~~~~~~~~----~~~~~~v~- 370 (413)
.+... .. ..+...+..++|+||++++++.... ..|++|| ..+++....+ .+|...+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~ 311 (719)
T 1z68_A 232 TYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGG 311 (719)
T ss_dssp SCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSS
T ss_pred CCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEcc
Confidence 86543 11 1356678999999998877774322 3588899 8777765545 35666666
Q ss_pred ----EEEEccCCe--EE-EEcCCC--eEEEEEecCCc
Q 040361 371 ----SLAVTPEEC--FL-AGTKDG--CLLVYSIENRR 398 (413)
Q Consensus 371 ----~~~~~~~~~--~l-~~~~dg--~i~vw~~~~~~ 398 (413)
.+.|+|||+ ++ +...+| .|.+|++.+++
T Consensus 312 ~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~ 348 (719)
T 1z68_A 312 FFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN 348 (719)
T ss_dssp SSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT
T ss_pred ccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc
Confidence 789999986 23 244555 56677776654
No 160
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.86 E-value=1.6e-20 Score=178.96 Aligned_cols=260 Identities=8% Similarity=-0.005 Sum_probs=175.2
Q ss_pred cCCCCCCceeeecCC-CCccccCCCcCCCcccCCCCcccceec-ceeEEEEecCCCCEEEEeecC---CCeEEEEEcCC-
Q 040361 92 TQLQSGGNFTFSGSQ-DPFFGVGADILSPRNVGSPLAESFELG-SQCFTTMQTPSENFLITCGNW---ENSFQVIALND- 165 (413)
Q Consensus 92 ~~~s~~~~~l~~~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~g~~---d~~i~i~~~~~- 165 (413)
..|+|||+.|+.++. |+.+++|.. .. ....+...++ ..+....|+|+ .+++++.. +....+|.+..
T Consensus 27 ~~~~~DG~~la~~s~~~g~~~lw~~--~~----g~~~~lt~~~~~~~~~~~~spd--~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 27 LQGVVDGDKLLVVGFSEGSVNAYLY--DG----GETVKLNREPINSVLDPHYGVG--RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp EEEEETTTEEEEEEEETTEEEEEEE--ET----TEEEECCSSCCSEECEECTTCS--EEEEEEECSTTSCCEEEEEEETT
T ss_pred eecCCCCCeEEEEEccCCceeEEEE--cC----CCcEeeecccccccccccCCCC--eEEEEeccCCCCcceEEEEEecc
Confidence 346888988887776 888888742 11 1111122223 46778889988 45554443 44455654432
Q ss_pred --CcEEEEeecCCCeEEEEEECCCCC--EEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCC
Q 040361 166 --GRVVQSIRQHRDVVSCVAVTTDGS--ILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHD 241 (413)
Q Consensus 166 --~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 241 (413)
+... .+..+. .+...+|+||++ .+++++.+ .+.+||+.+++ . ..+..+.
T Consensus 99 ~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~-~~~l~d~~~g~-----------------------~-~~l~~~~ 151 (582)
T 3o4h_A 99 RPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATED-RVALYALDGGG-----------------------L-RELARLP 151 (582)
T ss_dssp STTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSS-CEEEEEEETTE-----------------------E-EEEEEES
T ss_pred CCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCC-CceEEEccCCc-----------------------E-EEeecCC
Confidence 3333 343222 233567777775 44445444 45599998775 2 2222333
Q ss_pred CCeEEEEEecCCCEEEEeeCC----CcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCC--eEEEEEeCC
Q 040361 242 DIITCLYVSVELDIVISGSKD----GTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDL--SLHLFSING 315 (413)
Q Consensus 242 ~~i~~~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~i~d~~~ 315 (413)
. .+++|+|||+.+++++.+ +.|++||+.+++.. .+..+ ...+..++|+|||+.|+++..++ .|++||+++
T Consensus 152 ~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~-~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~ 227 (582)
T 3o4h_A 152 G--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSG-EGSFSSASISPGMKVTAGLETAREARLVTVDPRD 227 (582)
T ss_dssp S--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCS-SCEEEEEEECTTSCEEEEEECSSCEEEEEECTTT
T ss_pred C--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecC-CCccccceECCCCCEEEEccCCCeeEEEEEcCCC
Confidence 3 789999999999988777 78999999888765 44433 45689999999999999888888 899999985
Q ss_pred ceeee-eecCCceeEEE--------ecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEccCCeEE-EEcC
Q 040361 316 KHLAS-SESNGRLNCLE--------LSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFL-AGTK 385 (413)
Q Consensus 316 ~~~~~-~~~~~~i~~~~--------~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~ 385 (413)
..... ..+...+..++ |+|||.++++++.+|.+++|++ ++... .+.+.+.+++|+ +++++ +++.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~ 301 (582)
T 3o4h_A 228 GSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTS 301 (582)
T ss_dssp CCEEECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEE
T ss_pred CcEEEccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcC
Confidence 44433 34555666666 9999999999999999999999 66554 345679999999 88766 4555
Q ss_pred CC---eEEEEEecC
Q 040361 386 DG---CLLVYSIEN 396 (413)
Q Consensus 386 dg---~i~vw~~~~ 396 (413)
+. .+++|+..+
T Consensus 302 ~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 302 LSTPPRIVSLPSGE 315 (582)
T ss_dssp TTEEEEEEEETTCC
T ss_pred CCCCCeEEEEcCCC
Confidence 53 366666543
No 161
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.85 E-value=1.4e-20 Score=183.93 Aligned_cols=314 Identities=8% Similarity=-0.007 Sum_probs=198.0
Q ss_pred CCCCeEEEEeecCCcEEEEecCceEEEEEee----------ccCCCCCCceeeecCC---------CCccccCCCcCCCc
Q 040361 60 HQPSGIVYVGMLDSSIVLVNQGLTLSVKMWL----------TTQLQSGGNFTFSGSQ---------DPFFGVGADILSPR 120 (413)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~s~~~~~l~~~~~---------d~~~~~~~~~~~~~ 120 (413)
.+++.+++.+ .++.+.+|+........+.. ...+||||++|+.++. ++.+.+|+....
T Consensus 24 s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g-- 100 (719)
T 1z68_A 24 ISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNG-- 100 (719)
T ss_dssp SSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT--
T ss_pred CCCCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCC--
Confidence 3445444443 57889999976554444332 2368999999988876 678888643211
Q ss_pred ccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEe-ecCCCeE-----------------EEE
Q 040361 121 NVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSI-RQHRDVV-----------------SCV 182 (413)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~-~~h~~~v-----------------~~~ 182 (413)
.... ... ....+..+.|+|+|+.++++. ++.|++|++.+++..... .++...| .++
T Consensus 101 ~~~~--~~~--l~~~~~~~~~SPDG~~la~~~--~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~ 174 (719)
T 1z68_A 101 EFVR--GNE--LPRPIQYLCWSPVGSKLAYVY--QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYAL 174 (719)
T ss_dssp EECC--SSC--CCSSBCCEEECSSTTCEEEEE--TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCE
T ss_pred cccc--cee--cCcccccceECCCCCEEEEEE--CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccE
Confidence 1100 001 123467789999999998864 889999999888775433 2333322 489
Q ss_pred EECCCCCEEEEccCCC----------------------------------cEEEEEeccccccccccccceeecCCCcee
Q 040361 183 AVTTDGSILATGSYDT----------------------------------TVMVWEVIRARAPEKRVRNMQIEAPRKDYV 228 (413)
Q Consensus 183 ~~~~~~~~l~s~s~dg----------------------------------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (413)
+|+|||++|++++.|. .|++||+.+++.... ...
T Consensus 175 ~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~----~~~-------- 242 (719)
T 1z68_A 175 WWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGP----QEV-------- 242 (719)
T ss_dssp EECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCC----EEC--------
T ss_pred EECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccce----eEc--------
Confidence 9999999999988652 566777765541000 000
Q ss_pred eecCceeeeecCCCCeEEEEEecCCCEEEEeeCC----CcEEEEE----ccCCeEEEEEe---CCCCCcee-----eEEE
Q 040361 229 IVETPFHILCGHDDIITCLYVSVELDIVISGSKD----GTCVFHT----LREGRYVRSLC---HPSGSALS-----KLAA 292 (413)
Q Consensus 229 ~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~d----g~i~vwd----~~~~~~~~~~~---~~~~~~v~-----~~~~ 292 (413)
.....+.+|...+..++|+||++++++.... ..|.+|| +.+++....+. ..+...+. .+.|
T Consensus 243 ---~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (719)
T 1z68_A 243 ---PVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVF 319 (719)
T ss_dssp ---CCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEE
T ss_pred ---cCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEE
Confidence 0002234688889999999998777764432 2488899 77776544332 22233454 7899
Q ss_pred ccCCcEEEE--ECCCC--eEEEEEeCCceeeee-ecCCceeEEEecCCCCEEEEeCCC-----CeEEEEECCC--Cc-eE
Q 040361 293 SRHGRIVLY--GDDDL--SLHLFSINGKHLASS-ESNGRLNCLELSACGQFLVCGGDQ-----GQIVVRSMNS--LE-VV 359 (413)
Q Consensus 293 ~~~~~~l~~--~~~d~--~i~i~d~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~v~d~~~--~~-~~ 359 (413)
+|+|+.++. ...++ .|++||+.+...... .....+..+.++ +++.|+..+.+ +.+++|.+.. +. ..
T Consensus 320 spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 398 (719)
T 1z68_A 320 SYDAISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSK 398 (719)
T ss_dssp CTTSSCEEEEEECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCE
T ss_pred CCCCCeEEEEEEccCCceEEEEEECCCCceEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCc
Confidence 999986544 44555 577777765443332 344557777777 77776665544 7788887653 32 12
Q ss_pred EEec----CCCCcEEEEEEccCCeEE--EEcCC--CeEEEEEecCCc
Q 040361 360 RRYS----GVGKIITSLAVTPEECFL--AGTKD--GCLLVYSIENRR 398 (413)
Q Consensus 360 ~~~~----~~~~~v~~~~~~~~~~~l--~~~~d--g~i~vw~~~~~~ 398 (413)
..+. +|...+..+.|+|++.++ +++.+ ..+.+|++.+++
T Consensus 399 ~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~ 445 (719)
T 1z68_A 399 KCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQ 445 (719)
T ss_dssp EESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCC
T ss_pred eeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCC
Confidence 3333 255678899999997533 34433 468899987765
No 162
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.85 E-value=1.8e-18 Score=153.76 Aligned_cols=220 Identities=13% Similarity=0.187 Sum_probs=154.6
Q ss_pred CCeEEEEEc--CCCcEEE-EeecCCCeEEEEEECCCCCEEEEccC---CCcEEEEEeccccccccccccceeecCCCcee
Q 040361 155 ENSFQVIAL--NDGRVVQ-SIRQHRDVVSCVAVTTDGSILATGSY---DTTVMVWEVIRARAPEKRVRNMQIEAPRKDYV 228 (413)
Q Consensus 155 d~~i~i~~~--~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~s~s~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (413)
++.|++|.+ .+++... ....+...+..++|+|||+ |++++. ++.|.+|++.++..
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~------------------ 75 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA------------------ 75 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE------------------
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE------------------
Confidence 456777765 4565543 2334567788899999999 655554 68999999966541
Q ss_pred eecCceeeeecCCCCeEEEEEecCCCEEEEee-CCCcEEEEEcc-CC--eEEEEEeCCC--------CCceeeEEEccCC
Q 040361 229 IVETPFHILCGHDDIITCLYVSVELDIVISGS-KDGTCVFHTLR-EG--RYVRSLCHPS--------GSALSKLAASRHG 296 (413)
Q Consensus 229 ~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~-~dg~i~vwd~~-~~--~~~~~~~~~~--------~~~v~~~~~~~~~ 296 (413)
..+..+..+...+..++|+|++++|++++ .++.+.+||+. .+ ..+..+.... ...+..++|+|++
T Consensus 76 ---~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg 152 (347)
T 3hfq_A 76 ---HKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDN 152 (347)
T ss_dssp ---EEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTS
T ss_pred ---EEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCC
Confidence 12334455677889999999999888877 68999999996 33 3333333211 1247789999999
Q ss_pred cEEEEECCCCeEEEEEeC-Cceeee-----eecCCceeEEEecCCCCEEEE-eCCCCeEEEEECCC--Cce--EEEecCC
Q 040361 297 RIVLYGDDDLSLHLFSIN-GKHLAS-----SESNGRLNCLELSACGQFLVC-GGDQGQIVVRSMNS--LEV--VRRYSGV 365 (413)
Q Consensus 297 ~~l~~~~~d~~i~i~d~~-~~~~~~-----~~~~~~i~~~~~s~~~~~l~~-~~~dg~i~v~d~~~--~~~--~~~~~~~ 365 (413)
+++++...++.|++|++. ...+.. ......+..++|+|+|+++++ +..++.|.+|++.. ++. +..+...
T Consensus 153 ~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~ 232 (347)
T 3hfq_A 153 RLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTI 232 (347)
T ss_dssp CEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESS
T ss_pred cEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeec
Confidence 977777788999999998 333321 123346788999999996655 56788999999874 443 2233322
Q ss_pred C------CcEEEEEEccCCeEE--EEcCCCeEEEEEecC
Q 040361 366 G------KIITSLAVTPEECFL--AGTKDGCLLVYSIEN 396 (413)
Q Consensus 366 ~------~~v~~~~~~~~~~~l--~~~~dg~i~vw~~~~ 396 (413)
. ..+..++|+|||+++ +...++.|.+|++..
T Consensus 233 ~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~ 271 (347)
T 3hfq_A 233 PADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA 271 (347)
T ss_dssp CTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG
T ss_pred CCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC
Confidence 2 458999999998744 356789999999973
No 163
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.84 E-value=6.1e-18 Score=148.99 Aligned_cols=240 Identities=14% Similarity=0.146 Sum_probs=182.9
Q ss_pred ceeEEEEecCCCCEEEEeecCC------------------------CeEEEEEcCCCcEEEEee-cCCCeEEEEEECCCC
Q 040361 134 SQCFTTMQTPSENFLITCGNWE------------------------NSFQVIALNDGRVVQSIR-QHRDVVSCVAVTTDG 188 (413)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~g~~d------------------------~~i~i~~~~~~~~~~~~~-~h~~~v~~~~~~~~~ 188 (413)
..+..++++++|+.+++.. .+ +.|.+||..+++....+. ++-.....++++++|
T Consensus 24 ~~v~~va~d~~G~l~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHR-GDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp SCEEEEEECTTCCEEEEEC-TTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred CCceEEEECCCCCEEEEeC-CCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 4577888899998776543 34 479999999899887665 355688999999999
Q ss_pred CEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeee---------ecCCCCeEEEEEec-CCCEEEE
Q 040361 189 SILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHIL---------CGHDDIITCLYVSV-ELDIVIS 258 (413)
Q Consensus 189 ~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~h~~~i~~~~~~~-~~~~l~s 258 (413)
+++++...++.|++|+...... .+..+ .++......++++| ++.++++
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~----------------------~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~ 160 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEG----------------------PLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVS 160 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSC----------------------CSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEE
T ss_pred CEEEEECCCCEEEEEeCCCCeE----------------------EEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEE
Confidence 9999988899999999754420 11112 23455688999999 7888888
Q ss_pred ee-CCCcEEEEEccCCeEEEEEeCCC---------CCceeeEEEccC-CcEEEEECCCCeEEEEEeC-Cceeeee---ec
Q 040361 259 GS-KDGTCVFHTLREGRYVRSLCHPS---------GSALSKLAASRH-GRIVLYGDDDLSLHLFSIN-GKHLASS---ES 323 (413)
Q Consensus 259 ~~-~dg~i~vwd~~~~~~~~~~~~~~---------~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~-~~~~~~~---~~ 323 (413)
.+ .++.|++|| .+++.+..+.... -.....++++|+ +.++++...++.|++||.+ ++.+... ..
T Consensus 161 d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~ 239 (329)
T 3fvz_A 161 DGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASF 239 (329)
T ss_dssp ECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTT
T ss_pred eCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEecccc
Confidence 76 699999999 5777777664221 123788999998 7888888889999999998 7666554 24
Q ss_pred CCceeEEEecC------CCCEEEEeCCCCeEEEEECCCCceEEEec---CCCCcEEEEEEccCCeEE-EEcCCCeEEEEE
Q 040361 324 NGRLNCLELSA------CGQFLVCGGDQGQIVVRSMNSLEVVRRYS---GVGKIITSLAVTPEECFL-AGTKDGCLLVYS 393 (413)
Q Consensus 324 ~~~i~~~~~s~------~~~~l~~~~~dg~i~v~d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l-~~~~dg~i~vw~ 393 (413)
...+..++++| +|+..++...+..|++||..+++.+..+. .+...+.+++++|+|.++ +...++.|++|+
T Consensus 240 ~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~ 319 (329)
T 3fvz_A 240 GRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFT 319 (329)
T ss_dssp TTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEE
T ss_pred CCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEe
Confidence 45788899999 33333334455689999999999998873 566779999999998655 577889999999
Q ss_pred ecCC
Q 040361 394 IENR 397 (413)
Q Consensus 394 ~~~~ 397 (413)
++..
T Consensus 320 ~~~~ 323 (329)
T 3fvz_A 320 LTEK 323 (329)
T ss_dssp EEEC
T ss_pred CCcc
Confidence 8754
No 164
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.83 E-value=6.1e-20 Score=179.52 Aligned_cols=235 Identities=8% Similarity=0.019 Sum_probs=168.3
Q ss_pred eEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCe-----EEEEEECCCCCEEEEccCC---------CcEE
Q 040361 136 CFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDV-----VSCVAVTTDGSILATGSYD---------TTVM 201 (413)
Q Consensus 136 ~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~-----v~~~~~~~~~~~l~s~s~d---------g~i~ 201 (413)
...+.|+|++++++. + |+.|++||+.+++....+.+|... ...++|||||++|+.++.+ +.+.
T Consensus 19 ~~~~~w~~dg~~~~~-~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~ 95 (740)
T 4a5s_A 19 LYSLRWISDHEYLYK-Q--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD 95 (740)
T ss_dssp CCCEEECSSSEEEEE-E--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred ccccEECCCCcEEEE-c--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence 456889999976665 4 899999999999988888877642 2347899999999998876 5667
Q ss_pred EEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeC
Q 040361 202 VWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCH 281 (413)
Q Consensus 202 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 281 (413)
+||+.+++ ...+..|...+...+|||||+.|+.+. ++.|++||+.+++..+....
T Consensus 96 ~~d~~~~~------------------------~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~ 150 (740)
T 4a5s_A 96 IYDLNKRQ------------------------LITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWT 150 (740)
T ss_dssp EEETTTTE------------------------ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSC
T ss_pred EEECCCCc------------------------EEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCC
Confidence 99998876 334566778899999999999998884 78999999988775442221
Q ss_pred CCCC-----------------ceeeEEEccCCcEEEEECCC------------------------------------CeE
Q 040361 282 PSGS-----------------ALSKLAASRHGRIVLYGDDD------------------------------------LSL 308 (413)
Q Consensus 282 ~~~~-----------------~v~~~~~~~~~~~l~~~~~d------------------------------------~~i 308 (413)
.... ....+.|+|||+.|+..+.| ..|
T Consensus 151 g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l 230 (740)
T 4a5s_A 151 GKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKF 230 (740)
T ss_dssp CBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEE
T ss_pred CCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEE
Confidence 1111 12358999999999886422 158
Q ss_pred EEEEeCC---c---eeeee-------ecCCceeEEEecCCCCEEEEeC----CCCeEEEEECCCCc----eE--EEe--c
Q 040361 309 HLFSING---K---HLASS-------ESNGRLNCLELSACGQFLVCGG----DQGQIVVRSMNSLE----VV--RRY--S 363 (413)
Q Consensus 309 ~i~d~~~---~---~~~~~-------~~~~~i~~~~~s~~~~~l~~~~----~dg~i~v~d~~~~~----~~--~~~--~ 363 (413)
++||+.+ . ..... .+...+..++|+|||+.++... .+..|++||+.+++ +. ..+ .
T Consensus 231 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~ 310 (740)
T 4a5s_A 231 FVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEM 310 (740)
T ss_dssp EEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEE
T ss_pred EEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeec
Confidence 8899887 4 33222 2566789999999999766543 33479999999887 22 222 3
Q ss_pred CCCCcEE-----EEEEccCCeE-E-EEc-CC--CeEEEEEecCCc
Q 040361 364 GVGKIIT-----SLAVTPEECF-L-AGT-KD--GCLLVYSIENRR 398 (413)
Q Consensus 364 ~~~~~v~-----~~~~~~~~~~-l-~~~-~d--g~i~vw~~~~~~ 398 (413)
.|...|. .+.|+|||+. + ..+ .+ ..|++|++.+++
T Consensus 311 ~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~ 355 (740)
T 4a5s_A 311 STTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD 355 (740)
T ss_dssp CSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSS
T ss_pred cCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCc
Confidence 4554443 6889999863 3 333 34 458888887654
No 165
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.82 E-value=1.1e-18 Score=157.65 Aligned_cols=236 Identities=12% Similarity=0.069 Sum_probs=165.9
Q ss_pred EEecCCCCEEEEeecCCC--eEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccc
Q 040361 139 TMQTPSENFLITCGNWEN--SFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVR 216 (413)
Q Consensus 139 ~~~~~~~~~l~~~g~~d~--~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~ 216 (413)
..|+|+|+.+++++..++ .|.+||+.+++......++...+..++|+||++.|+.++.++.|.+||+.+++
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~------- 113 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLE------- 113 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCC-------
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCc-------
Confidence 568999999999876566 58889999998887777777666678899999999999999999999998876
Q ss_pred cceeecCCCceeeecCceeeeecCCCCeEEEE--EecCCCEEEEe----------------------eCCCcEEEEEccC
Q 040361 217 NMQIEAPRKDYVIVETPFHILCGHDDIITCLY--VSVELDIVISG----------------------SKDGTCVFHTLRE 272 (413)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~--~~~~~~~l~s~----------------------~~dg~i~vwd~~~ 272 (413)
....+..+...+.... +++++..++.. ..+..|.+||+.+
T Consensus 114 ----------------~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~ 177 (388)
T 3pe7_A 114 ----------------ENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKT 177 (388)
T ss_dssp ----------------EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTT
T ss_pred ----------------ceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCC
Confidence 2333444444443333 47888887642 2457899999998
Q ss_pred CeEEEEEeCCCCCceeeEEEcc-CCcEEEEECCC------CeEEEEEeCCceeeee-ecC--CceeEEEecCCCCEEEEe
Q 040361 273 GRYVRSLCHPSGSALSKLAASR-HGRIVLYGDDD------LSLHLFSINGKHLASS-ESN--GRLNCLELSACGQFLVCG 342 (413)
Q Consensus 273 ~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d------~~i~i~d~~~~~~~~~-~~~--~~i~~~~~s~~~~~l~~~ 342 (413)
++....... ...+..+.|+| +++.|+....+ ..|.++|+.+...... ... ..+...+|+|||+.|+..
T Consensus 178 g~~~~l~~~--~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~ 255 (388)
T 3pe7_A 178 GESTVILQE--NQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYV 255 (388)
T ss_dssp CCEEEEEEE--SSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEE
T ss_pred CceEEeecC--CccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEE
Confidence 876554443 23688999999 99988776543 3788888876544433 222 357788999999977654
Q ss_pred CC-CC----eEEEEECCCCceE--EEecCCCCc---EEEEEEccCCeEEE-E---------cCCCeEEEEEecCCcc
Q 040361 343 GD-QG----QIVVRSMNSLEVV--RRYSGVGKI---ITSLAVTPEECFLA-G---------TKDGCLLVYSIENRRT 399 (413)
Q Consensus 343 ~~-dg----~i~v~d~~~~~~~--~~~~~~~~~---v~~~~~~~~~~~l~-~---------~~dg~i~vw~~~~~~~ 399 (413)
+. ++ .|++||+.+++.. ..+.++... ...+.|+|||+.++ . ..+..|++||+.+++.
T Consensus 256 ~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 332 (388)
T 3pe7_A 256 SYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ 332 (388)
T ss_dssp EEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE
T ss_pred ecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce
Confidence 32 22 4999999988743 333321000 11236999986543 2 4567899999988654
No 166
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.82 E-value=1.7e-18 Score=167.53 Aligned_cols=230 Identities=11% Similarity=0.040 Sum_probs=161.8
Q ss_pred cCCCCE-EEEeecCCCeEEEEEcC--C-CcEEEEeec-----CCCeEEEEEECCCCCEEEEccCC----------CcEEE
Q 040361 142 TPSENF-LITCGNWENSFQVIALN--D-GRVVQSIRQ-----HRDVVSCVAVTTDGSILATGSYD----------TTVMV 202 (413)
Q Consensus 142 ~~~~~~-l~~~g~~d~~i~i~~~~--~-~~~~~~~~~-----h~~~v~~~~~~~~~~~l~s~s~d----------g~i~i 202 (413)
+|+|+. ++++...+..|+++++. . ++ ...+.. |...+..++|+|||+.|++++.| ..|.+
T Consensus 87 SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~ 165 (662)
T 3azo_A 87 RPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAA 165 (662)
T ss_dssp CSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEE
T ss_pred ecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEE
Confidence 499998 77766556677777775 2 43 445555 67789999999999999998877 58999
Q ss_pred EEecc------ccccccccccceeecCCCceeeecCceeeee-cCCCCeEEEEEecCCCEEEEeeCC--------CcEEE
Q 040361 203 WEVIR------ARAPEKRVRNMQIEAPRKDYVIVETPFHILC-GHDDIITCLYVSVELDIVISGSKD--------GTCVF 267 (413)
Q Consensus 203 w~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~i~~~~~~~~~~~l~s~~~d--------g~i~v 267 (413)
||+.+ +. ...+. .+...+..++|+|||++|+.++.+ ..|.+
T Consensus 166 ~~~~~~~~~~~~~------------------------~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~ 221 (662)
T 3azo_A 166 VPLDGSAAADRSA------------------------VRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKT 221 (662)
T ss_dssp EETTSTTTTCGGG------------------------SEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEE
T ss_pred EECCCCccccCCc------------------------eeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEE
Confidence 99877 43 23344 555677889999999999877755 37999
Q ss_pred EEcc-CC--eEEEEEeCCCCCceeeEEEccCCcEEEEECCCC--eEEEEEeCCceeee-eecCCc---------eeEEEe
Q 040361 268 HTLR-EG--RYVRSLCHPSGSALSKLAASRHGRIVLYGDDDL--SLHLFSINGKHLAS-SESNGR---------LNCLEL 332 (413)
Q Consensus 268 wd~~-~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~-~~~~~~---------i~~~~~ 332 (413)
||+. ++ .....+.......+..+.|+|+|++++++..++ .|++||+.+..... ...... +..++|
T Consensus 222 ~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~ 301 (662)
T 3azo_A 222 ARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAP 301 (662)
T ss_dssp EEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEE
T ss_pred EEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeE
Confidence 9998 56 233334332234788999999999888888888 66666765433332 222111 467899
Q ss_pred cCCCCEEEEeCCCCeEEEE--ECCCCceEEEecCCCCcEEEE-EEccCCeEEE-EcCCCe--EEEEEecCCc
Q 040361 333 SACGQFLVCGGDQGQIVVR--SMNSLEVVRRYSGVGKIITSL-AVTPEECFLA-GTKDGC--LLVYSIENRR 398 (413)
Q Consensus 333 s~~~~~l~~~~~dg~i~v~--d~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~-~~~dg~--i~vw~~~~~~ 398 (413)
+|++++++++.. +.++|| |+.+++ +..+..+...+..+ +++++..+++ ++.+.. |.+|++.+++
T Consensus 302 ~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~ 371 (662)
T 3azo_A 302 LANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGR 371 (662)
T ss_dssp CTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCC
T ss_pred eCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 999999999998 998998 655554 67787787788877 5554444444 555544 5555555554
No 167
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.81 E-value=7.2e-18 Score=149.77 Aligned_cols=291 Identities=10% Similarity=0.026 Sum_probs=172.2
Q ss_pred CCCCCeEEEEeecCCcEEEEecCceEEEEEeec--------cCCCCCCceee-ecCCCCccccCCCcCCCcccCCCCccc
Q 040361 59 RHQPSGIVYVGMLDSSIVLVNQGLTLSVKMWLT--------TQLQSGGNFTF-SGSQDPFFGVGADILSPRNVGSPLAES 129 (413)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~s~~~~~l~-~~~~d~~~~~~~~~~~~~~~~~~~~~~ 129 (413)
..+...++.++..++.+.+|+.......+.+.. ..++|+|++++ +...++.+.+++..... . ...
T Consensus 7 ~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~--~----~~~ 80 (349)
T 1jmx_B 7 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK--N----TFH 80 (349)
T ss_dssp CCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTE--E----EEE
T ss_pred ccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCc--E----EEE
Confidence 455677788888899999999766554444321 24799998664 55677888886422111 0 011
Q ss_pred cee-------cceeEEEEecCCCCEEEEeecC-----------CCeEEEEEcCCCcEE---EEeecCCCeEEEEEECCCC
Q 040361 130 FEL-------GSQCFTTMQTPSENFLITCGNW-----------ENSFQVIALNDGRVV---QSIRQHRDVVSCVAVTTDG 188 (413)
Q Consensus 130 ~~~-------~~~~~~~~~~~~~~~l~~~g~~-----------d~~i~i~~~~~~~~~---~~~~~h~~~v~~~~~~~~~ 188 (413)
+.. ...+..+.++|+++++++++.. ++.|.+||+.+++.. ..+. +...+.+++|+||+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg 159 (349)
T 1jmx_B 81 ANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDG 159 (349)
T ss_dssp EESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTS
T ss_pred EEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCC
Confidence 111 2235678899999999887752 489999999885433 3343 34468899999999
Q ss_pred CEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeee-cCC-C---CeEEEEEecCCCEEEEeeC-C
Q 040361 189 SILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILC-GHD-D---IITCLYVSVELDIVISGSK-D 262 (413)
Q Consensus 189 ~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~-~---~i~~~~~~~~~~~l~s~~~-d 262 (413)
+ +++++. .|.+||..+++.... ..................... ... . ....+++++++........ .
T Consensus 160 ~-l~~~~~--~i~~~d~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 232 (349)
T 1jmx_B 160 S-LYVAGP--DIYKMDVKTGKYTVA----LPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLL 232 (349)
T ss_dssp C-EEEESS--SEEEECTTTCCEEEE----ECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEE
T ss_pred c-EEEccC--cEEEEeCCCCceecc----ccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccc
Confidence 9 555543 499999987652110 000000000000000000000 000 0 2334555544321100000 0
Q ss_pred CcEEEEEccCCeEEEEEeCCCCCceeeEEEcc-CCcEEEEECCCCeEEEEEeCCce-eeeeecCCceeEEEecCCCCEEE
Q 040361 263 GTCVFHTLREGRYVRSLCHPSGSALSKLAASR-HGRIVLYGDDDLSLHLFSINGKH-LASSESNGRLNCLELSACGQFLV 340 (413)
Q Consensus 263 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~ 340 (413)
..+..+|..+++....-....+..+..++++| ++++++++ ++.|.+||++... +........+.+++|+|+|++|+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 310 (349)
T 1jmx_B 233 YGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLY 310 (349)
T ss_dssp EEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEE
T ss_pred eeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEE
Confidence 11122444433321111111244688999999 99999888 8899999998544 34455566788999999999888
Q ss_pred EeCCCCeEEEEECCCCceEEEecCC
Q 040361 341 CGGDQGQIVVRSMNSLEVVRRYSGV 365 (413)
Q Consensus 341 ~~~~dg~i~v~d~~~~~~~~~~~~~ 365 (413)
+++.++.|++||..+++.+..++.+
T Consensus 311 ~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 311 LGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp EESBSSEEEEEETTTTEEEEEEECS
T ss_pred EecCCCeEEEEeccccceeeeeecC
Confidence 8888999999999999988887644
No 168
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.81 E-value=8.1e-19 Score=158.81 Aligned_cols=277 Identities=8% Similarity=-0.047 Sum_probs=171.5
Q ss_pred eccCCCCCCceeeecC-CCCccccCCCcCCCcccCCCCcccceecceeE-EEEecCCCCEEEEeecCCCeEEEEEcCCCc
Q 040361 90 LTTQLQSGGNFTFSGS-QDPFFGVGADILSPRNVGSPLAESFELGSQCF-TTMQTPSENFLITCGNWENSFQVIALNDGR 167 (413)
Q Consensus 90 ~~~~~s~~~~~l~~~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~ 167 (413)
....+||||++++... .++...+|.......... .......... ...|+|+++.+++++. ++.|++||+.+++
T Consensus 39 ~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~----~l~~~~~~~~~~~~~spdg~~l~~~~~-~~~l~~~d~~~~~ 113 (396)
T 3c5m_A 39 YQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAV----QLTEGKGDNTFGGFISTDERAFFYVKN-ELNLMKVDLETLE 113 (396)
T ss_dssp TSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEE----ECCCSSCBCTTTCEECTTSSEEEEEET-TTEEEEEETTTCC
T ss_pred ecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEE----EeecCCCCccccceECCCCCEEEEEEc-CCcEEEEECCCCC
Confidence 3457899999876543 334333321111111110 0111112222 2568999999988665 7799999999888
Q ss_pred EEEEeecCCCeEEE-------------------EEECCCCCEEEEc-----cCCCcEEEEEeccccccccccccceeecC
Q 040361 168 VVQSIRQHRDVVSC-------------------VAVTTDGSILATG-----SYDTTVMVWEVIRARAPEKRVRNMQIEAP 223 (413)
Q Consensus 168 ~~~~~~~h~~~v~~-------------------~~~~~~~~~l~s~-----s~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 223 (413)
.......+...... +.|+|+++.++.+ ..+..|.+||+.+++
T Consensus 114 ~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~-------------- 179 (396)
T 3c5m_A 114 EQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGE-------------- 179 (396)
T ss_dssp EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCC--------------
T ss_pred cEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCc--------------
Confidence 77666655543333 3467777766654 355678888887665
Q ss_pred CCceeeecCceeeeecCCCCeEEEEEec-CCCEEEEeeCC------CcEEEEEccCCeEEEEEeCCC-CCceeeEEEccC
Q 040361 224 RKDYVIVETPFHILCGHDDIITCLYVSV-ELDIVISGSKD------GTCVFHTLREGRYVRSLCHPS-GSALSKLAASRH 295 (413)
Q Consensus 224 ~~~~~~~~~~~~~~~~h~~~i~~~~~~~-~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~-~~~v~~~~~~~~ 295 (413)
...+..+...+..+.|+| +++.++..+.+ ..|.+||+..++.. .+..+. ...+..++|+|+
T Consensus 180 ----------~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spd 248 (396)
T 3c5m_A 180 ----------LEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPD 248 (396)
T ss_dssp ----------EEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTT
T ss_pred ----------EEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECCC
Confidence 223335667789999999 78767665543 46888898665433 332221 235778899999
Q ss_pred CcEEEEECCC-----CeEEEEEeCCceeeee-ecCCceeEEEecC-CCCEEEEeC----------------CCCeEEEEE
Q 040361 296 GRIVLYGDDD-----LSLHLFSINGKHLASS-ESNGRLNCLELSA-CGQFLVCGG----------------DQGQIVVRS 352 (413)
Q Consensus 296 ~~~l~~~~~d-----~~i~i~d~~~~~~~~~-~~~~~i~~~~~s~-~~~~l~~~~----------------~dg~i~v~d 352 (413)
|+.|+..+.+ +.|++||+.+...... .... .. +.|+| +|+++++++ .++.|++||
T Consensus 249 g~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d 326 (396)
T 3c5m_A 249 GSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLN 326 (396)
T ss_dssp SSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEE
T ss_pred CCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEe
Confidence 9987766433 4499999985443332 2222 33 89999 999888754 347899999
Q ss_pred CCCCceEEEecCCCC-----------cEEEEEEccCCeEE-E-EcCCCeEEEEEe--cCCcc
Q 040361 353 MNSLEVVRRYSGVGK-----------IITSLAVTPEECFL-A-GTKDGCLLVYSI--ENRRT 399 (413)
Q Consensus 353 ~~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~l-~-~~~dg~i~vw~~--~~~~~ 399 (413)
+.+++.. .+..+.. .+..++|+|||+.+ . +..++...+|.+ .+++.
T Consensus 327 ~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~ 387 (396)
T 3c5m_A 327 TKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYK 387 (396)
T ss_dssp TTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC
T ss_pred cccCceE-EccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccccc
Confidence 9887653 3444443 25667899998644 3 444565555554 44433
No 169
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.81 E-value=4.6e-17 Score=138.99 Aligned_cols=213 Identities=15% Similarity=0.169 Sum_probs=170.1
Q ss_pred CCCEEEEeecCCCeEEEEEcCCCcEEEEeecCC-CeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeec
Q 040361 144 SENFLITCGNWENSFQVIALNDGRVVQSIRQHR-DVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEA 222 (413)
Q Consensus 144 ~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~ 222 (413)
+++ ++++++.++.|.+||.++|+.+..+..+. ..+.++.++|+|+.|++ .++.|..||. +++
T Consensus 4 ~~~-~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs--~~~~V~~~d~-~G~------------- 66 (276)
T 3no2_A 4 PQH-LLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFS--YSKGAKMITR-DGR------------- 66 (276)
T ss_dssp CCE-EEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEE--CBSEEEEECT-TSC-------------
T ss_pred CCc-EEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEe--CCCCEEEECC-CCC-------------
Confidence 344 45557779999999999999999998776 57889999999998883 4678999998 665
Q ss_pred CCCceeeecCceeeeecC-CCCeEEEEEecCCCEEEEeeC-CCcEEEEEccCCeEEEEEeCCCC-----CceeeEEEccC
Q 040361 223 PRKDYVIVETPFHILCGH-DDIITCLYVSVELDIVISGSK-DGTCVFHTLREGRYVRSLCHPSG-----SALSKLAASRH 295 (413)
Q Consensus 223 ~~~~~~~~~~~~~~~~~h-~~~i~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~-----~~v~~~~~~~~ 295 (413)
.+..+..+ ...+.++.+.++++++++.+. ++.|..+|. +|+.+..+..... .....++..++
T Consensus 67 ----------~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~ 135 (276)
T 3no2_A 67 ----------ELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKK 135 (276)
T ss_dssp ----------EEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTT
T ss_pred ----------EEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCC
Confidence 34455544 346788999999999999887 788888885 7888877753211 13456778999
Q ss_pred CcEEEEECCCCeEEEEEeCCceeeeeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCC------CcE
Q 040361 296 GRIVLYGDDDLSLHLFSINGKHLASSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVG------KII 369 (413)
Q Consensus 296 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~------~~v 369 (413)
|+++++...++.|..||.+++.+........+.++.+.++|++++++..++.|..+|..+++.+.++..+. ..+
T Consensus 136 G~~lv~~~~~~~v~~~d~~G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~ 215 (276)
T 3no2_A 136 GNYLVPLFATSEVREIAPNGQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFV 215 (276)
T ss_dssp SCEEEEETTTTEEEEECTTSCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEE
T ss_pred CCEEEEecCCCEEEEECCCCCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCcccccc
Confidence 99999999999999999998888777666677788899999999999989999999999999998886432 237
Q ss_pred EEEEEccCCeEEEEc
Q 040361 370 TSLAVTPEECFLAGT 384 (413)
Q Consensus 370 ~~~~~~~~~~~l~~~ 384 (413)
..+...++|.+++++
T Consensus 216 ~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 216 AQLFPLQNGGLYICN 230 (276)
T ss_dssp EEEEECTTSCEEEEE
T ss_pred ccceEcCCCCEEEEe
Confidence 888899998777544
No 170
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.80 E-value=6.3e-18 Score=151.24 Aligned_cols=239 Identities=8% Similarity=0.077 Sum_probs=159.9
Q ss_pred CCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCE-EEEeec-------------CCCeE
Q 040361 93 QLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENF-LITCGN-------------WENSF 158 (413)
Q Consensus 93 ~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~g~-------------~d~~i 158 (413)
.++|+|+++++++.+ .+.+|+..... .... .. ..........+.++|+|+. +++++. .++.+
T Consensus 46 a~spdg~~l~~~~~~-~v~~~~~~~~g-~~~~-~~-~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v 121 (365)
T 1jof_A 46 TFDHERKNIYGAAMK-KWSSFAVKSPT-EIVH-EA-SHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYG 121 (365)
T ss_dssp EECTTSSEEEEEEBT-EEEEEEEEETT-EEEE-EE-EEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEE
T ss_pred EECCCCCEEEEEccc-eEEEEEECCCC-CEEE-ee-EeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceE
Confidence 479999999988887 77776421111 1100 00 0001122344778999996 343332 58999
Q ss_pred EEEEcC-CCcEEEEee----cCCCeEEEEEECCCCCEEEEccC-CCcEEEEEec-cccccccccccceeecCCCceeeec
Q 040361 159 QVIALN-DGRVVQSIR----QHRDVVSCVAVTTDGSILATGSY-DTTVMVWEVI-RARAPEKRVRNMQIEAPRKDYVIVE 231 (413)
Q Consensus 159 ~i~~~~-~~~~~~~~~----~h~~~v~~~~~~~~~~~l~s~s~-dg~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (413)
.+|++. +++....+. .+...+.+++|+|||++|+++.. ++.|.+|++. +++..
T Consensus 122 ~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~-------------------- 181 (365)
T 1jof_A 122 NVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVE-------------------- 181 (365)
T ss_dssp EEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEE--------------------
T ss_pred EEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEE--------------------
Confidence 999997 576655444 25678999999999998887653 6799999997 55410
Q ss_pred Cceeeee--cCCCCeEEEEEecCCCEEEEeeC-CCcEEEEEcc--CCeEE---EEEeC-CCC----C-------ceeeEE
Q 040361 232 TPFHILC--GHDDIITCLYVSVELDIVISGSK-DGTCVFHTLR--EGRYV---RSLCH-PSG----S-------ALSKLA 291 (413)
Q Consensus 232 ~~~~~~~--~h~~~i~~~~~~~~~~~l~s~~~-dg~i~vwd~~--~~~~~---~~~~~-~~~----~-------~v~~~~ 291 (413)
.+..+. .|...+..++|+|+++++++++. ++.|.+|++. +++.. ..+.. +.+ . .+..++
T Consensus 182 -~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~ 260 (365)
T 1jof_A 182 -LVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVC 260 (365)
T ss_dssp -EEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEE
T ss_pred -EeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEE
Confidence 112222 24567899999999998887765 6899999875 56543 22321 111 1 478899
Q ss_pred -EccCCcEEEEECCCC------eEEEEEeC-Cceeee----ee-cCCceeEEEecC---CCCEEEEeCCC-CeEEEEECC
Q 040361 292 -ASRHGRIVLYGDDDL------SLHLFSIN-GKHLAS----SE-SNGRLNCLELSA---CGQFLVCGGDQ-GQIVVRSMN 354 (413)
Q Consensus 292 -~~~~~~~l~~~~~d~------~i~i~d~~-~~~~~~----~~-~~~~i~~~~~s~---~~~~l~~~~~d-g~i~v~d~~ 354 (413)
|+|+|++|++++.+. .|.+|+++ ...+.. .. ....+..++|+| +|++|++++.+ +.|.+|++.
T Consensus 261 ~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~ 340 (365)
T 1jof_A 261 ALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWK 340 (365)
T ss_dssp EECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred EECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEc
Confidence 999999888765432 89999995 333321 22 344577899999 89999998764 899999987
Q ss_pred CC
Q 040361 355 SL 356 (413)
Q Consensus 355 ~~ 356 (413)
..
T Consensus 341 ~~ 342 (365)
T 1jof_A 341 DE 342 (365)
T ss_dssp TT
T ss_pred hh
Confidence 65
No 171
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.80 E-value=1.7e-16 Score=140.05 Aligned_cols=262 Identities=11% Similarity=0.037 Sum_probs=178.6
Q ss_pred eccCCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEE
Q 040361 90 LTTQLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVV 169 (413)
Q Consensus 90 ~~~~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~ 169 (413)
....|++++..++..+.++.++.| ..... ............++|+++++ +++++..++.|.+||..+++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~----~~~~~~~~~~~~~~~~~~g~-l~~~~~~~~~i~~~d~~~~~~~ 79 (333)
T 2dg1_A 9 PTLFYSGKSNSAVPIISESELQTI----TAEPW----LEISKKGLQLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIK 79 (333)
T ss_dssp CBCCSCGGGGCSSCCCCGGGSCEE----ECEEE----EEEESSCCCEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEE
T ss_pred ceeeecCCccceeEEeecccCccc----cccee----EEEeccCccccCcEECCCCC-EEEEECCCCEEEEEeCCCCcEE
Confidence 345678888888877778888774 11111 01111123456778888888 4444666899999999888876
Q ss_pred EEeecCCCeEEEEEECCCCCEEEEccCC----CcEEEEEeccccccccccccceeecCCCceeeecCceeeee--cCCCC
Q 040361 170 QSIRQHRDVVSCVAVTTDGSILATGSYD----TTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILC--GHDDI 243 (413)
Q Consensus 170 ~~~~~h~~~v~~~~~~~~~~~l~s~s~d----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~ 243 (413)
.....+...+.+++++++++++++...+ +.|.+||..++.. ...+. .+...
T Consensus 80 ~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~-----------------------~~~~~~~~~~~~ 136 (333)
T 2dg1_A 80 RPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL-----------------------QDIIEDLSTAYC 136 (333)
T ss_dssp EEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC-----------------------EEEECSSSSCCC
T ss_pred EEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEE-----------------------EEEEccCccCCc
Confidence 6554577889999999999988877666 6899999876651 11111 23457
Q ss_pred eEEEEEecCCCEEEEeeC------CCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEE-EEECCCCeEEEEEeC--
Q 040361 244 ITCLYVSVELDIVISGSK------DGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIV-LYGDDDLSLHLFSIN-- 314 (413)
Q Consensus 244 i~~~~~~~~~~~l~s~~~------dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~i~d~~-- 314 (413)
+..++++|+++++++... .+.|..+|..+++....... ...+..++++|+++.+ ++...++.|++||++
T Consensus 137 ~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~ 214 (333)
T 2dg1_A 137 IDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN--ISVANGIALSTDEKVLWVTETTANRLHRIALEDD 214 (333)
T ss_dssp EEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE--ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred ccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC--CCcccceEECCCCCEEEEEeCCCCeEEEEEecCC
Confidence 889999999988877654 35666666655544332221 1247889999999855 455567899999995
Q ss_pred Cceeee------eec--CCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCC------cEEEEEEccCC-e
Q 040361 315 GKHLAS------SES--NGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGK------IITSLAVTPEE-C 379 (413)
Q Consensus 315 ~~~~~~------~~~--~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~------~v~~~~~~~~~-~ 379 (413)
+..+.. ... ...+..++++++|+++++...++.|.+||. +++.+..+..+.. .+.+++|+||+ .
T Consensus 215 g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~ 293 (333)
T 2dg1_A 215 GVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQ 293 (333)
T ss_dssp SSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCE
T ss_pred CcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCE
Confidence 332211 111 246788999999998888877889999998 5677766654432 68999999996 5
Q ss_pred EEEEcCC
Q 040361 380 FLAGTKD 386 (413)
Q Consensus 380 ~l~~~~d 386 (413)
+++++.+
T Consensus 294 L~v~~~~ 300 (333)
T 2dg1_A 294 LIICSND 300 (333)
T ss_dssp EEEEEEC
T ss_pred EEEEeCc
Confidence 5444433
No 172
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.80 E-value=2.5e-17 Score=146.68 Aligned_cols=216 Identities=13% Similarity=0.117 Sum_probs=147.8
Q ss_pred CCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEcc----------CCCcEEEEEeccccccccccccceeecC
Q 040361 154 WENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGS----------YDTTVMVWEVIRARAPEKRVRNMQIEAP 223 (413)
Q Consensus 154 ~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 223 (413)
.|+.|++||..+++.+..+..+..+ .++|+||+++++++. .++.|.+||..+.+
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~-------------- 92 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLT-------------- 92 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCC--------------
T ss_pred ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCc--------------
Confidence 3789999999999999888876555 899999999999886 36789999987765
Q ss_pred CCceeeecCceeeeec------CCCCeEEEEEecCCCEEEEeeC--CCcEEEEEccCCeEEEE-EeCCCC--------Cc
Q 040361 224 RKDYVIVETPFHILCG------HDDIITCLYVSVELDIVISGSK--DGTCVFHTLREGRYVRS-LCHPSG--------SA 286 (413)
Q Consensus 224 ~~~~~~~~~~~~~~~~------h~~~i~~~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~-~~~~~~--------~~ 286 (413)
.+..+.. +......++++|++++|+++.. ++.|.+||+.+++.+.. +..... ..
T Consensus 93 ---------~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~ 163 (361)
T 2oiz_A 93 ---------FEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRP 163 (361)
T ss_dssp ---------EEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSS
T ss_pred ---------EEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCC
Confidence 2333322 2244667899999999988764 57899999999988777 432110 00
Q ss_pred eeeEEEcc--------------------------------------CCcEEEEECCCCeEEEEEeCCceeee---eec--
Q 040361 287 LSKLAASR--------------------------------------HGRIVLYGDDDLSLHLFSINGKHLAS---SES-- 323 (413)
Q Consensus 287 v~~~~~~~--------------------------------------~~~~l~~~~~d~~i~i~d~~~~~~~~---~~~-- 323 (413)
..-+++++ ++..++..+.++.+.++|+....... ...
T Consensus 164 ~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~ 243 (361)
T 2oiz_A 164 RSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLN 243 (361)
T ss_dssp SEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCC
T ss_pred eeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccC
Confidence 00111112 22222333344555566654221110 000
Q ss_pred ---------CCceeEEEecCCCCEEEEeCC-----------CCeEEEEECCCCceEEEecCCCCcEEEEEEccCCeEE-E
Q 040361 324 ---------NGRLNCLELSACGQFLVCGGD-----------QGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFL-A 382 (413)
Q Consensus 324 ---------~~~i~~~~~s~~~~~l~~~~~-----------dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~ 382 (413)
......++|+|+++.++++.. .+.|.+||+.+++.+.++..+. +.+++|+|||++| +
T Consensus 244 ~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v 321 (361)
T 2oiz_A 244 DEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLT 321 (361)
T ss_dssp HHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEE
T ss_pred ccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEE
Confidence 011123789999887777543 3589999999999999998776 9999999998766 4
Q ss_pred EcCCCeEEEEEecCC
Q 040361 383 GTKDGCLLVYSIENR 397 (413)
Q Consensus 383 ~~~dg~i~vw~~~~~ 397 (413)
++. +.|.+||.+++
T Consensus 322 ~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 322 LDG-GNVNVYDISQP 335 (361)
T ss_dssp ECS-SCEEEEECSSS
T ss_pred eCC-CeEEEEECCCC
Confidence 555 99999999998
No 173
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.79 E-value=4.7e-17 Score=159.14 Aligned_cols=329 Identities=12% Similarity=0.063 Sum_probs=190.7
Q ss_pred CCCCCeEEEEeecCCcEEEEecCceEEEEEeec------------cCCCCCCceeeecCCCCcc---------ccCCCcC
Q 040361 59 RHQPSGIVYVGMLDSSIVLVNQGLTLSVKMWLT------------TQLQSGGNFTFSGSQDPFF---------GVGADIL 117 (413)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~s~~~~~l~~~~~d~~~---------~~~~~~~ 117 (413)
..+++.+++.+ ++.+.+|+........+... ..+||||++++.++.+..+ .+|+..
T Consensus 24 w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~- 100 (740)
T 4a5s_A 24 WISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLN- 100 (740)
T ss_dssp ECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT-
T ss_pred ECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECC-
Confidence 44566666665 88999999766554444221 2359999999988877544 354321
Q ss_pred CCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEe-ecCCCeE-----------------
Q 040361 118 SPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSI-RQHRDVV----------------- 179 (413)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~-~~h~~~v----------------- 179 (413)
.... .....+...+....|+|+|+.++.+. ++.|++|++.+++..+.. .++...+
T Consensus 101 -~~~~----~~l~~~~~~~~~~~~SPdG~~la~~~--~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~ 173 (740)
T 4a5s_A 101 -KRQL----ITEERIPNNTQWVTWSPVGHKLAYVW--NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAY 173 (740)
T ss_dssp -TTEE----CCSSCCCTTEEEEEECSSTTCEEEEE--TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSS
T ss_pred -CCcE----EEcccCCCcceeeEECCCCCEEEEEE--CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCC
Confidence 1111 11122345678899999999998864 889999999888765422 2333323
Q ss_pred EEEEECCCCCEEEEccCCCc-EEEEEeccccccc---ccccccee---ecCCC--ceee--ecC-------ceeeee---
Q 040361 180 SCVAVTTDGSILATGSYDTT-VMVWEVIRARAPE---KRVRNMQI---EAPRK--DYVI--VET-------PFHILC--- 238 (413)
Q Consensus 180 ~~~~~~~~~~~l~s~s~dg~-i~iw~~~~~~~~~---~~~~~~~~---~~~~~--~~~~--~~~-------~~~~~~--- 238 (413)
..+.|+|||++|+.++.|.+ +.+|++....... ........ +.+.. .+.+ ... ....+.
T Consensus 174 ~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~ 253 (740)
T 4a5s_A 174 SALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPA 253 (740)
T ss_dssp BCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCH
T ss_pred cceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCc
Confidence 34899999999999876544 7777764322110 00000000 00000 0000 000 112222
Q ss_pred ---cCCCCeEEEEEecCCCEEEEeeC----CCcEEEEEccCCe----EE--EEE-eCCCCCce-----eeEEEccCCcEE
Q 040361 239 ---GHDDIITCLYVSVELDIVISGSK----DGTCVFHTLREGR----YV--RSL-CHPSGSAL-----SKLAASRHGRIV 299 (413)
Q Consensus 239 ---~h~~~i~~~~~~~~~~~l~s~~~----dg~i~vwd~~~~~----~~--~~~-~~~~~~~v-----~~~~~~~~~~~l 299 (413)
+|...+..++|+||++.++.... +..|.+||+.+++ +. ..+ ...+...+ ...+|+|||+.+
T Consensus 254 ~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l 333 (740)
T 4a5s_A 254 SMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSF 333 (740)
T ss_dssp HHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEE
T ss_pred cCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEE
Confidence 37778999999999996665432 3479999999886 21 111 11122233 368899999977
Q ss_pred E-EEC-CC--CeEEEEEeCCceeeee-ecCCceeEEEecCCCCEEE-EeCC----CC--eEEEEECCCCceEEEecC---
Q 040361 300 L-YGD-DD--LSLHLFSINGKHLASS-ESNGRLNCLELSACGQFLV-CGGD----QG--QIVVRSMNSLEVVRRYSG--- 364 (413)
Q Consensus 300 ~-~~~-~d--~~i~i~d~~~~~~~~~-~~~~~i~~~~~s~~~~~l~-~~~~----dg--~i~v~d~~~~~~~~~~~~--- 364 (413)
+ ..+ .+ ..|++||+.+...... .....+..+. .++++.|+ ++.. .+ .|+..++..+.....+..
T Consensus 334 ~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~-~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~ 412 (740)
T 4a5s_A 334 YKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIE-ALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELN 412 (740)
T ss_dssp EEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEEEE-EECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTS
T ss_pred EEEEEcCCCceEEEEEECCCCceEecccCCEEEEEEE-EEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccC
Confidence 6 544 33 4688888886554443 2334455543 24465544 4444 23 455555554443334432
Q ss_pred -CCCcEEEEEEccCCeEEE--EcC--CCeEEEEEecCCc
Q 040361 365 -VGKIITSLAVTPEECFLA--GTK--DGCLLVYSIENRR 398 (413)
Q Consensus 365 -~~~~v~~~~~~~~~~~l~--~~~--dg~i~vw~~~~~~ 398 (413)
.......+.|+|++++++ .+. -..+.+++..+++
T Consensus 413 ~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~ 451 (740)
T 4a5s_A 413 PERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDK 451 (740)
T ss_dssp TTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTE
T ss_pred CCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCc
Confidence 235688999999986553 222 2467788877654
No 174
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.78 E-value=3.3e-16 Score=135.81 Aligned_cols=234 Identities=11% Similarity=0.039 Sum_probs=165.5
Q ss_pred eeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccc
Q 040361 135 QCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKR 214 (413)
Q Consensus 135 ~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~ 214 (413)
....++|+|+++.+++++..++.|..|+..++ ...+..+...+.+++++++++++++...++.|.+||..+++...
T Consensus 29 ~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~-- 104 (296)
T 3e5z_A 29 WTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWES-- 104 (296)
T ss_dssp SEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEE--
T ss_pred cccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEE--
Confidence 34578889999977777877999999999877 66677788889999999999988887778899999987665100
Q ss_pred cccceeecCCCceeeecCceeeee-cCCCCeEEEEEecCCCEEEE----ee-------------CCCcEEEEEccCCeEE
Q 040361 215 VRNMQIEAPRKDYVIVETPFHILC-GHDDIITCLYVSVELDIVIS----GS-------------KDGTCVFHTLREGRYV 276 (413)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~i~~~~~~~~~~~l~s----~~-------------~dg~i~vwd~~~~~~~ 276 (413)
...... .....+..++++++|+++++ |+ ..+.|..++.. ++..
T Consensus 105 ------------------~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~ 165 (296)
T 3e5z_A 105 ------------------IADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLS 165 (296)
T ss_dssp ------------------EECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEE
T ss_pred ------------------EeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEE
Confidence 000000 11234678999999998887 33 13456666654 4433
Q ss_pred EEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeC--Cce---eee-eecCCceeEEEecCCCCEEEEeCCCCeEEE
Q 040361 277 RSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSIN--GKH---LAS-SESNGRLNCLELSACGQFLVCGGDQGQIVV 350 (413)
Q Consensus 277 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~~---~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v 350 (413)
.+... ......++|+|+++.+++.+.++.|++|++. +.. ... ......+..++++++|+++++. ++.|.+
T Consensus 166 -~~~~~-~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~ 241 (296)
T 3e5z_A 166 -APIRD-RVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHV 241 (296)
T ss_dssp -EEECC-CSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEE
T ss_pred -EeecC-CCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEE
Confidence 33322 3457889999999988888888999999996 322 111 1234556789999999977766 789999
Q ss_pred EECCCCceEEEecCCCCcEEEEEE-ccCCe-EEEEcCCCeEEEEEecCCc
Q 040361 351 RSMNSLEVVRRYSGVGKIITSLAV-TPEEC-FLAGTKDGCLLVYSIENRR 398 (413)
Q Consensus 351 ~d~~~~~~~~~~~~~~~~v~~~~~-~~~~~-~l~~~~dg~i~vw~~~~~~ 398 (413)
||.. ++.+..+..+.. +.+++| .|++. +.+++.+ .+.-++.++++
T Consensus 242 ~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~ 288 (296)
T 3e5z_A 242 LTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRG 288 (296)
T ss_dssp ECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETT-EEEEEECSCCB
T ss_pred ECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCC-eEEEEEccccc
Confidence 9986 788888877777 899999 57865 4455554 34444554443
No 175
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.78 E-value=3.5e-16 Score=134.91 Aligned_cols=196 Identities=15% Similarity=0.216 Sum_probs=145.0
Q ss_pred eeEEEEec-CCCCEEEEeecCCCeEEEEEcCCCcEEEEeec-CCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccc
Q 040361 135 QCFTTMQT-PSENFLITCGNWENSFQVIALNDGRVVQSIRQ-HRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPE 212 (413)
Q Consensus 135 ~~~~~~~~-~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~ 212 (413)
.+..+++. +++..+++....++.|.+|| .+++.+..+.. +...+.+++++++++.+++...++.|.+|+... +
T Consensus 78 ~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~--- 152 (286)
T 1q7f_A 78 YPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-N--- 152 (286)
T ss_dssp SEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-C---
T ss_pred CceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC-C---
Confidence 35566774 45544444322378999999 57777776643 456789999999999888888889999999642 2
Q ss_pred cccccceeecCCCceeeecCceeeee--cCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCC-CCceee
Q 040361 213 KRVRNMQIEAPRKDYVIVETPFHILC--GHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPS-GSALSK 289 (413)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~~v~~ 289 (413)
.+..+. .+...+..++++++++++++...++.|++||. +++.+..+.... ...+..
T Consensus 153 --------------------~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~ 211 (286)
T 1q7f_A 153 --------------------VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIG 211 (286)
T ss_dssp --------------------EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEE
T ss_pred --------------------EEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcE
Confidence 122222 34456899999999998888888999999997 566666665331 246789
Q ss_pred EEEccCCcEEEEECCCC-eEEEEEeCCceeeeeec---CCceeEEEecCCCCEEEEeCCCCeEEEEECCCCc
Q 040361 290 LAASRHGRIVLYGDDDL-SLHLFSINGKHLASSES---NGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLE 357 (413)
Q Consensus 290 ~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~---~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~ 357 (413)
++++++|+++++...++ .|.+||.+++.+..... ...+.+++++|+|+++++ +.++.|++|+.....
T Consensus 212 i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 212 VGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLA 282 (286)
T ss_dssp EEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred EEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccccc
Confidence 99999999988888876 99999988776655432 234779999999987777 568999999986543
No 176
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.77 E-value=2.3e-16 Score=140.46 Aligned_cols=266 Identities=10% Similarity=0.052 Sum_probs=174.7
Q ss_pred cCCCCCCceeeecC----------CCCccccCCCcCCCcccCC-C-CcccceecceeEEEEecCCCCEEEEeecC-CCeE
Q 040361 92 TQLQSGGNFTFSGS----------QDPFFGVGADILSPRNVGS-P-LAESFELGSQCFTTMQTPSENFLITCGNW-ENSF 158 (413)
Q Consensus 92 ~~~s~~~~~l~~~~----------~d~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~l~~~g~~-d~~i 158 (413)
..++|||++++.++ .++.+.+++..... .... . .............+.++|+|++++++... ++.|
T Consensus 55 i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~-~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v 133 (361)
T 2oiz_A 55 VQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLT-FEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI 133 (361)
T ss_dssp EEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCC-EEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEE
T ss_pred eEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCc-EEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeE
Confidence 46899999998875 35678876421100 0000 0 00011112345567889999999987654 6899
Q ss_pred EEEEcCCCcEEEE-eecCCCeEEEEEECCCC-CEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceee
Q 040361 159 QVIALNDGRVVQS-IRQHRDVVSCVAVTTDG-SILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHI 236 (413)
Q Consensus 159 ~i~~~~~~~~~~~-~~~h~~~v~~~~~~~~~-~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (413)
.+||+.+++.+.. +.. .+. ..+.+.|++ ..+++.+.||.+.+|++........... ....
T Consensus 134 ~v~d~~~~~~~~~~i~~-~~~-~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~----------------~~~~ 195 (361)
T 2oiz_A 134 GIVDVAKGDYVEDVTAA-AGC-WSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSR----------------SKQM 195 (361)
T ss_dssp EEEETTTTEEEEEEGGG-TTE-EEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEE----------------CCCC
T ss_pred EEEECCCCcEEEEEecC-CCc-ceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeecc----------------ccce
Confidence 9999999998888 653 222 235567765 6788889999999999865321000000 0011
Q ss_pred eecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCe--EEEEEeCCC---------CCceeeEEEccCCcEEEEECC-
Q 040361 237 LCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGR--YVRSLCHPS---------GSALSKLAASRHGRIVLYGDD- 304 (413)
Q Consensus 237 ~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~---------~~~v~~~~~~~~~~~l~~~~~- 304 (413)
+..+..++ .+.+++++..++..+.++.+.++|+.... ....+.... ......++++|+++.++++..
T Consensus 196 ~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~ 274 (361)
T 2oiz_A 196 FSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHP 274 (361)
T ss_dssp SCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEES
T ss_pred EcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEcc
Confidence 12222222 22345677777777788999999986543 222222110 012234789999887776542
Q ss_pred ----------CCeEEEEEeCCc-eeeeeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCC--ceEEEecCCCCcEEE
Q 040361 305 ----------DLSLHLFSINGK-HLASSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSL--EVVRRYSGVGKIITS 371 (413)
Q Consensus 305 ----------d~~i~i~d~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~--~~~~~~~~~~~~v~~ 371 (413)
.+.|.+||+... .+....... +.+++|+|+|++|++++. +.|.+||..++ +.+.++..+......
T Consensus 275 ~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~ 352 (361)
T 2oiz_A 275 DGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQ 352 (361)
T ss_dssp SCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEE
T ss_pred CCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEE
Confidence 348999999854 444455445 999999999999999887 99999999999 999988767788899
Q ss_pred EEEccCCe
Q 040361 372 LAVTPEEC 379 (413)
Q Consensus 372 ~~~~~~~~ 379 (413)
++++|+|.
T Consensus 353 ~~~~p~G~ 360 (361)
T 2oiz_A 353 VQFHPVGG 360 (361)
T ss_dssp EEECCCSC
T ss_pred EEecCCCC
Confidence 99999974
No 177
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.77 E-value=7.7e-18 Score=152.36 Aligned_cols=235 Identities=10% Similarity=0.040 Sum_probs=157.5
Q ss_pred EEEEecCCCCEEEEeecCC--CeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccc
Q 040361 137 FTTMQTPSENFLITCGNWE--NSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKR 214 (413)
Q Consensus 137 ~~~~~~~~~~~l~~~g~~d--~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~ 214 (413)
....|+|+|+.++++...+ ..|.+||+.+++......++......+.|+|||++|+.++.++.|.+||+.+++.
T Consensus 39 ~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~---- 114 (396)
T 3c5m_A 39 YQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEE---- 114 (396)
T ss_dssp TSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCE----
T ss_pred ecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCc----
Confidence 3456799999988876543 3788899988876554443333333478999999999999999999999877651
Q ss_pred cccceeecCCCceeeecCceeeeecCCCCeEE-------------------EEEecCCCEEEEe-----eCCCcEEEEEc
Q 040361 215 VRNMQIEAPRKDYVIVETPFHILCGHDDIITC-------------------LYVSVELDIVISG-----SKDGTCVFHTL 270 (413)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~-------------------~~~~~~~~~l~s~-----~~dg~i~vwd~ 270 (413)
......+...... +.|+|+++.++.+ ..+..|.+||+
T Consensus 115 -------------------~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~ 175 (396)
T 3c5m_A 115 -------------------QVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDI 175 (396)
T ss_dssp -------------------EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEET
T ss_pred -------------------EEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEEC
Confidence 1111111111111 3467777766544 35678999999
Q ss_pred cCCeEEEEEeCCCCCceeeEEEcc-CCcEEEEECCC------CeEEEEEeCCceeeee-ec--CCceeEEEecCCCCEEE
Q 040361 271 REGRYVRSLCHPSGSALSKLAASR-HGRIVLYGDDD------LSLHLFSINGKHLASS-ES--NGRLNCLELSACGQFLV 340 (413)
Q Consensus 271 ~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d------~~i~i~d~~~~~~~~~-~~--~~~i~~~~~s~~~~~l~ 340 (413)
.+++....... ...+..+.|+| ++..|+..+.+ ..|.+||+.+...... .+ ...+..++|+|+|++|+
T Consensus 176 ~~g~~~~~~~~--~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~ 253 (396)
T 3c5m_A 176 ETGELEVIHQD--TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMA 253 (396)
T ss_dssp TTCCEEEEEEE--SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEE
T ss_pred CCCcEEeeccC--CcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEE
Confidence 88876655433 34688899999 78766665433 4688899875543332 22 23578899999999877
Q ss_pred EeCCC-----CeEEEEECCCCceEEEecCCCCcEEEEEEcc-CCeEEE-Ec----------------CCCeEEEEEecCC
Q 040361 341 CGGDQ-----GQIVVRSMNSLEVVRRYSGVGKIITSLAVTP-EECFLA-GT----------------KDGCLLVYSIENR 397 (413)
Q Consensus 341 ~~~~d-----g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~-~~----------------~dg~i~vw~~~~~ 397 (413)
.++.+ +.|++||+.+++...... ... .. +.|+| ||++++ ++ .++.|++||+.++
T Consensus 254 ~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (396)
T 3c5m_A 254 YVSYFKGQTDRVIYKANPETLENEEVMV-MPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAK 330 (396)
T ss_dssp EEEEETTTCCEEEEEECTTTCCEEEEEE-CCS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTT
T ss_pred EEecCCCCccceEEEEECCCCCeEEeee-CCC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccC
Confidence 76443 459999998876543322 122 33 89999 987665 32 3478999999876
Q ss_pred cc
Q 040361 398 RT 399 (413)
Q Consensus 398 ~~ 399 (413)
+.
T Consensus 331 ~~ 332 (396)
T 3c5m_A 331 SA 332 (396)
T ss_dssp BC
T ss_pred ce
Confidence 53
No 178
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.76 E-value=5.6e-16 Score=132.41 Aligned_cols=240 Identities=10% Similarity=-0.009 Sum_probs=169.5
Q ss_pred eeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccc
Q 040361 135 QCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKR 214 (413)
Q Consensus 135 ~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~ 214 (413)
....+++.++++.++++...++.|.+|+..++........+...+.+++++++++.+++.. ++.|.+||.....
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~----- 98 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNN----- 98 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSC-----
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCce-----
Confidence 5567788898885552445588999998765543322223445678999999998766666 8899999976543
Q ss_pred cccceeecCCCceeeecCceeeee-cCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEc
Q 040361 215 VRNMQIEAPRKDYVIVETPFHILC-GHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAAS 293 (413)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~ 293 (413)
...+. .....+..++++++++++++...++.|.+|+..+........ .....+..++++
T Consensus 99 -------------------~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~-~~~~~p~~i~~~ 158 (270)
T 1rwi_B 99 -------------------QTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPF-TGLNDPDGVAVD 158 (270)
T ss_dssp -------------------CEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCC-CSCCSCCCEEEC
T ss_pred -------------------EeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeecc-ccCCCceeEEEe
Confidence 11111 223567899999999988887778899999866554332221 112357889999
Q ss_pred cCCcEEEEECCCCeEEEEEeCCceeeee--ecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEE
Q 040361 294 RHGRIVLYGDDDLSLHLFSINGKHLASS--ESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITS 371 (413)
Q Consensus 294 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~ 371 (413)
++++++++...++.|.+||..+...... .....+..++++++|.++++...++.|.+||............+...+.+
T Consensus 159 ~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~ 238 (270)
T 1rwi_B 159 NSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLA 238 (270)
T ss_dssp TTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEE
T ss_pred CCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCcee
Confidence 9999888877788999999986554432 22256889999999988888888899999998765443322233357899
Q ss_pred EEEccCCeEE-EEcCCCeEEEEEecCCccc
Q 040361 372 LAVTPEECFL-AGTKDGCLLVYSIENRRTS 400 (413)
Q Consensus 372 ~~~~~~~~~l-~~~~dg~i~vw~~~~~~~~ 400 (413)
++++++|.++ +...++.|+++++...+..
T Consensus 239 i~~~~~g~l~v~~~~~~~v~~~~~~~~~~~ 268 (270)
T 1rwi_B 239 VAVDSDRTVYVADRGNDRVVKLTSLEHHHH 268 (270)
T ss_dssp EEECTTCCEEEEEGGGTEEEEECCCGGGSC
T ss_pred EEECCCCCEEEEECCCCEEEEEcCCCcccc
Confidence 9999998755 5778999999999876543
No 179
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.76 E-value=5.5e-16 Score=150.92 Aligned_cols=242 Identities=7% Similarity=0.072 Sum_probs=171.8
Q ss_pred eeEEEEecCCCCEEEEeecCCC----eEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCc-----------
Q 040361 135 QCFTTMQTPSENFLITCGNWEN----SFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTT----------- 199 (413)
Q Consensus 135 ~~~~~~~~~~~~~l~~~g~~d~----~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~----------- 199 (413)
.+....|+|+|+.++++.+.+| .|++||+.+++.......+ ..+..++|+|||+.|+.++.++.
T Consensus 126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~ 204 (710)
T 2xdw_A 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST 204 (710)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccccccc
Confidence 4567889999999998766444 8999999999887643322 22667999999999999888766
Q ss_pred -----EEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeC-----CCcEEEEE
Q 040361 200 -----VMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSK-----DGTCVFHT 269 (413)
Q Consensus 200 -----i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~-----dg~i~vwd 269 (413)
|++|++.++..... .+.....|...+..+.|+||+++|+.++. +..|++||
T Consensus 205 ~~~~~v~~~~l~t~~~~~~-------------------~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d 265 (710)
T 2xdw_A 205 NLHQKLYYHVLGTDQSEDI-------------------LCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCD 265 (710)
T ss_dssp CCCCEEEEEETTSCGGGCE-------------------EEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEE
T ss_pred CCCCEEEEEECCCCcccce-------------------EEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEE
Confidence 99999876651100 11112234556789999999998887664 56899999
Q ss_pred ccC------Ce-EEEEEeCCCCCceeeEEEccCCcEEEEECC----CCeEEEEEeCCce----eeeeecC--CceeEEEe
Q 040361 270 LRE------GR-YVRSLCHPSGSALSKLAASRHGRIVLYGDD----DLSLHLFSINGKH----LASSESN--GRLNCLEL 332 (413)
Q Consensus 270 ~~~------~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~----~~~~~~~--~~i~~~~~ 332 (413)
+.+ +. ....+..+.. .+.. .++++|+.|+..+. ++.|.+||+.+.. .....+. ..+..++|
T Consensus 266 ~~~~~~~~~~~~~~~~l~~~~~-~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~ 343 (710)
T 2xdw_A 266 LQQESNGITGILKWVKLIDNFE-GEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVAC 343 (710)
T ss_dssp GGGSSSSSCSSCCCEEEECSSS-SCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEE
T ss_pred CcccccccCCccceEEeeCCCC-cEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEE
Confidence 986 43 3445544332 3333 57888887766544 3469999997432 2222332 36888999
Q ss_pred cCCCCEEEEeCCCCe--EEEEECCCCceEEEecCCCCcEEEEEEccCCe-EE-E-E--cCCCeEEEEEecCCc
Q 040361 333 SACGQFLVCGGDQGQ--IVVRSMNSLEVVRRYSGVGKIITSLAVTPEEC-FL-A-G--TKDGCLLVYSIENRR 398 (413)
Q Consensus 333 s~~~~~l~~~~~dg~--i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l-~-~--~~dg~i~vw~~~~~~ 398 (413)
++++.++++...++. |++||+.+++.+..+..+.+.+..+.++|++. ++ + . ...+.|+.||+.+++
T Consensus 344 ~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 344 VRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp ETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 988888888888884 66678877887788887888899999999863 33 2 2 246789999998876
No 180
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.75 E-value=3.6e-16 Score=138.78 Aligned_cols=212 Identities=12% Similarity=0.129 Sum_probs=147.0
Q ss_pred CCCEEEEeec--------CCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCC---Cc--EEEEEeccccc
Q 040361 144 SENFLITCGN--------WENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYD---TT--VMVWEVIRARA 210 (413)
Q Consensus 144 ~~~~l~~~g~--------~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d---g~--i~iw~~~~~~~ 210 (413)
+|+.++.+.. .++.|.+||+.+++... + ..+..++|+|||++|+.++.+ +. |.+|++.+++
T Consensus 23 dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~- 96 (347)
T 2gop_A 23 KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLS- 96 (347)
T ss_dssp ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTE-
T ss_pred CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCc-
Confidence 7888776531 25689999998887543 3 567889999999999987754 33 6677776654
Q ss_pred cccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCC---------------------------C
Q 040361 211 PEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKD---------------------------G 263 (413)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~d---------------------------g 263 (413)
... +..+.. +..++|+|+++.|+.++.+ .
T Consensus 97 ----------------------~~~-l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 152 (347)
T 2gop_A 97 ----------------------SKK-ILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKT 152 (347)
T ss_dssp ----------------------EEE-EEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEE
T ss_pred ----------------------eEE-EEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccc
Confidence 222 222333 8999999999988877632 5
Q ss_pred cEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCC---------CeEEEEEeCCceeeeeecCCceeEEEecC
Q 040361 264 TCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDD---------LSLHLFSINGKHLASSESNGRLNCLELSA 334 (413)
Q Consensus 264 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------~~i~i~d~~~~~~~~~~~~~~i~~~~~s~ 334 (413)
.|.+||+.+++.+..+.. . .+..++|+|+| +++++..+ ..|.++| .++......+ ..+.. ++|
T Consensus 153 ~l~~~d~~~~~~~~~l~~--~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~~-~~~~~--~sp 224 (347)
T 2gop_A 153 TFWIFDTESEEVIEEFEK--P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE-DGKEEKMFEK-VSFYA--VDS 224 (347)
T ss_dssp EEEEEETTTTEEEEEEEE--E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE-TTEEEEEEEE-ESEEE--EEE
T ss_pred eEEEEECCCCeEEeeecC--C-CcccccCCCCe-EEEEEecccccccccccccEEEeC-CCceEEeccC-cceee--ECC
Confidence 799999998887455544 2 67889999999 77776543 2455556 3332222233 44444 399
Q ss_pred CCCEEEEeCCC--------CeEEEEECCCCceEEEecCCCCcEEE-EEEccCCeEEEEcCCCeEEEEEecCC
Q 040361 335 CGQFLVCGGDQ--------GQIVVRSMNSLEVVRRYSGVGKIITS-LAVTPEECFLAGTKDGCLLVYSIENR 397 (413)
Q Consensus 335 ~~~~l~~~~~d--------g~i~v~d~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~dg~i~vw~~~~~ 397 (413)
+|++|+.++.+ ..|++|| +++.......+...+.. +.|+ |+.+++++.++.+++| +.++
T Consensus 225 dg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg~~~~~~~~~~~~l~-~~~g 292 (347)
T 2gop_A 225 DGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GKVYFTLFEEGSVNLY-IWDG 292 (347)
T ss_dssp CSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TEEEEEEEETTEEEEE-EESS
T ss_pred CCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-CcEEEEEecCCcEEEE-EcCC
Confidence 99988776543 4788888 56655545566778886 9999 8844468889999999 8744
No 181
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.75 E-value=8.5e-16 Score=136.38 Aligned_cols=223 Identities=9% Similarity=0.052 Sum_probs=153.8
Q ss_pred ceeEEEEecCCCCEEEEeecCC--C--eEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCC------------
Q 040361 134 SQCFTTMQTPSENFLITCGNWE--N--SFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYD------------ 197 (413)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~g~~d--~--~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d------------ 197 (413)
..+....|+|+|+.++++...+ + .|.+|++.+++.......+ . +..++|+|||+.|+.++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence 3456788999999998876533 3 4888898888766555433 3 9999999999999887642
Q ss_pred ---------------CcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCC
Q 040361 198 ---------------TTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKD 262 (413)
Q Consensus 198 ---------------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~d 262 (413)
..|.+||+.+++ .+..+.. . .+..++|+|++ +++++..+
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~-----------------------~~~~l~~-~-~~~~~~~spdg-~~~~~~~~ 190 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEE-----------------------VIEEFEK-P-RFSSGIWHRDK-IVVNVPHR 190 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTE-----------------------EEEEEEE-E-TTCEEEEETTE-EEEEEECC
T ss_pred cceeecCcccccCccceEEEEECCCCe-----------------------EEeeecC-C-CcccccCCCCe-EEEEEecc
Confidence 468888887665 2133333 3 67889999999 77777654
Q ss_pred C-------cEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCC--------CeEEEEEeCCceeeee-ecCCc
Q 040361 263 G-------TCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDD--------LSLHLFSINGKHLASS-ESNGR 326 (413)
Q Consensus 263 g-------~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------~~i~i~d~~~~~~~~~-~~~~~ 326 (413)
+ ...+|.+.+++. ..+..+ ..+.. ++|+|+.|+..+.+ ..|++|| .++..... .+...
T Consensus 191 ~~~~~~~~~~~l~~~d~~~~-~~l~~~--~~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~~~~~~ 264 (347)
T 2gop_A 191 EIIPQYFKFWDIYIWEDGKE-EKMFEK--VSFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYD-GKEVMGILDEVDRG 264 (347)
T ss_dssp CSSCCSSCCEEEEEEETTEE-EEEEEE--ESEEE--EEECSSCEEEEECCSSSCCCSSCEEEEEC-SSCEEESSTTCCSE
T ss_pred cccccccccccEEEeCCCce-EEeccC--cceee--ECCCCCEEEEEEccccCCccccceEEEEC-CCceEeccccCCcc
Confidence 2 345555445543 333322 23433 39999988776543 4788888 54433222 34567
Q ss_pred eeE-EEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEccCCeEEEEcCCCeE-EEEEec
Q 040361 327 LNC-LELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFLAGTKDGCL-LVYSIE 395 (413)
Q Consensus 327 i~~-~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~dg~i-~vw~~~ 395 (413)
+.. +.|+ ++ ++++++.++.++|| +.+++... +..+...|.+++|+| ..+++++.++.. .+|.++
T Consensus 265 ~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~-~~~~~~~v~~~~~s~-~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 265 VGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKP-IAKGRHWIMGFDVDE-IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEE-EECSSSEEEEEEESS-SEEEEEECSSSCCEEEEES
T ss_pred cCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEE-EecCCCeEEeeeeeC-cEEEEEcCCCChHHheEeC
Confidence 776 8999 88 88999999999999 87666544 434577899999999 655666666654 777776
No 182
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.74 E-value=2.5e-14 Score=123.87 Aligned_cols=237 Identities=8% Similarity=-0.018 Sum_probs=166.3
Q ss_pred ceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEE-EeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccc
Q 040361 134 SQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQ-SIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPE 212 (413)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~ 212 (413)
..+..+++.+++..+++ ...++.|..|+.. ++... .+......+..+++.++++.+++...++.|..||. ++..
T Consensus 57 ~~~~~i~~~~~g~l~v~-~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-- 131 (299)
T 2z2n_A 57 AKVMCLTISSDGEVWFT-ENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKI-- 131 (299)
T ss_dssp CCEEEEEECTTSCEEEE-ETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE--
T ss_pred CceeeEEECCCCCEEEe-CCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCE--
Confidence 44667778888886665 3337889999976 44322 22234567899999999988888777889999987 4331
Q ss_pred cccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEE
Q 040361 213 KRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAA 292 (413)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~ 292 (413)
.......+...+..+++.++++++++...++.|..||. +++............+..+++
T Consensus 132 --------------------~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~ 190 (299)
T 2z2n_A 132 --------------------REYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITK 190 (299)
T ss_dssp --------------------EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEE
T ss_pred --------------------EEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEE
Confidence 01112224456889999999988887777889999998 666544322222346789999
Q ss_pred ccCCcEEEEECCCCeEEEEEeCCceeee-e-ecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEE-ecCCCCcE
Q 040361 293 SRHGRIVLYGDDDLSLHLFSINGKHLAS-S-ESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRR-YSGVGKII 369 (413)
Q Consensus 293 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~-~~~~~~~v 369 (413)
++++.++++...++.|..||..+..... . .....+.+++++++|+++++...++.|..||. +++.... +..+...+
T Consensus 191 ~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~ 269 (299)
T 2z2n_A 191 GNDDALWFVEIIGNKIGRITTSGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIEEYPIQIKSAEP 269 (299)
T ss_dssp CTTSSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEEEEECSSSSCCE
T ss_pred CCCCCEEEEccCCceEEEECCCCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCceEEEeCCCCCCcc
Confidence 9999988887778899999995443222 1 23367889999999997777767889999998 4443221 33445679
Q ss_pred EEEEEccCCeEEEEcCCCeEEEEEecCCc
Q 040361 370 TSLAVTPEECFLAGTKDGCLLVYSIENRR 398 (413)
Q Consensus 370 ~~~~~~~~~~~l~~~~dg~i~vw~~~~~~ 398 (413)
.++++ +++.+..+...+.|..++.++++
T Consensus 270 ~~i~~-~~g~l~v~~~~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 270 HGICF-DGETIWFAMECDKIGKLTLIKDN 297 (299)
T ss_dssp EEEEE-CSSCEEEEETTTEEEEEEEC---
T ss_pred ceEEe-cCCCEEEEecCCcEEEEEcCccc
Confidence 99999 88887766556778888887653
No 183
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.74 E-value=1.7e-16 Score=153.60 Aligned_cols=235 Identities=11% Similarity=0.008 Sum_probs=162.4
Q ss_pred cceeEEEEecCCCCEEEEee--cCCCeEEEEEcCCCcEEEEeecCCCeEE---------EEEEC--CCCCE-EEEccC-C
Q 040361 133 GSQCFTTMQTPSENFLITCG--NWENSFQVIALNDGRVVQSIRQHRDVVS---------CVAVT--TDGSI-LATGSY-D 197 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~g--~~d~~i~i~~~~~~~~~~~~~~h~~~v~---------~~~~~--~~~~~-l~s~s~-d 197 (413)
...+....++++.-.++ .+ ..++...||....+.....+..|...+. ...|+ |||+. |+.++. +
T Consensus 23 ~~~~~~~~~s~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~ 101 (662)
T 3azo_A 23 SGRPACVGAVGDEVWWV-APRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGD 101 (662)
T ss_dssp CSCCEEEEEETTEEEEE-EEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTT
T ss_pred CCccceeEEcCCeEEEE-ecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCC
Confidence 44566677776543333 34 4578899998655556677777766665 56565 99998 765543 4
Q ss_pred CcEEEEEec--c-ccccccccccceeecCCCceeeecCceeeeec-----CCCCeEEEEEecCCCEEEEeeCC-------
Q 040361 198 TTVMVWEVI--R-ARAPEKRVRNMQIEAPRKDYVIVETPFHILCG-----HDDIITCLYVSVELDIVISGSKD------- 262 (413)
Q Consensus 198 g~i~iw~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----h~~~i~~~~~~~~~~~l~s~~~d------- 262 (413)
..|.++++. . +. ...+.. |...+..++|+||++.|+.++.+
T Consensus 102 ~~l~~~~~~~~g~~~------------------------~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~ 157 (662)
T 3azo_A 102 QRLYAFEPDAPGGAV------------------------PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPS 157 (662)
T ss_dssp CCEEEECTTSTTCCC------------------------CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTT
T ss_pred CeEEEEcCCCCCCCC------------------------CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCC
Confidence 556666554 2 22 223333 66778899999999999988877
Q ss_pred ---CcEEEEEccC------CeEEEEEe-CCCCCceeeEEEccCCcEEEEECCC--------CeEEEEEeC-Cc---eeee
Q 040361 263 ---GTCVFHTLRE------GRYVRSLC-HPSGSALSKLAASRHGRIVLYGDDD--------LSLHLFSIN-GK---HLAS 320 (413)
Q Consensus 263 ---g~i~vwd~~~------~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d--------~~i~i~d~~-~~---~~~~ 320 (413)
..|++||+.+ ++. ..+. .+ ...+..++|+|||+.|+..+.+ ..|++||+. .. ....
T Consensus 158 ~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~-~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~ 235 (662)
T 3azo_A 158 DVRRFLAAVPLDGSAAADRSAV-RELSDDA-HRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRT 235 (662)
T ss_dssp CEEEEEEEEETTSTTTTCGGGS-EESSCSC-SSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEE
T ss_pred CceeEEEEEECCCCccccCCce-eEEEecC-CCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEE
Confidence 5899999987 544 3443 32 3467889999999999877644 479999998 33 3332
Q ss_pred -e-ecCCceeEEEecCCCCEEEEeCCCC--eEEEEECCCCceEEEecCCCCc--------EEEEEEccCCeEEE-EcCCC
Q 040361 321 -S-ESNGRLNCLELSACGQFLVCGGDQG--QIVVRSMNSLEVVRRYSGVGKI--------ITSLAVTPEECFLA-GTKDG 387 (413)
Q Consensus 321 -~-~~~~~i~~~~~s~~~~~l~~~~~dg--~i~v~d~~~~~~~~~~~~~~~~--------v~~~~~~~~~~~l~-~~~dg 387 (413)
. .+...+..++|+|||+++++++.++ .|++||+.+++.......+... +..++|+|+++++. +.. +
T Consensus 236 l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~ 314 (662)
T 3azo_A 236 LLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-G 314 (662)
T ss_dssp EEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-S
T ss_pred eCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-C
Confidence 2 3467899999999999888888888 6777777677655433332221 56789999987764 666 9
Q ss_pred eEEEEEec
Q 040361 388 CLLVYSIE 395 (413)
Q Consensus 388 ~i~vw~~~ 395 (413)
.+++|.++
T Consensus 315 ~~~l~~~d 322 (662)
T 3azo_A 315 AAVLGILD 322 (662)
T ss_dssp SCEEEEEE
T ss_pred ccEEEEEE
Confidence 99999554
No 184
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.73 E-value=6.6e-15 Score=129.36 Aligned_cols=226 Identities=12% Similarity=0.027 Sum_probs=163.9
Q ss_pred CCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCC
Q 040361 145 ENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPR 224 (413)
Q Consensus 145 ~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 224 (413)
++.+.++...++.|.+||..+++.+..+. .......++++++++.+++...++.|.+||..+++
T Consensus 53 ~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~--------------- 116 (328)
T 3dsm_A 53 DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYE--------------- 116 (328)
T ss_dssp TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTE---------------
T ss_pred CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCe---------------
Confidence 45555556668999999999999998886 34678899998888555554488999999998776
Q ss_pred CceeeecCceeeeecCC-----CCeEEEEEecCCCEEEEee-CCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcE
Q 040361 225 KDYVIVETPFHILCGHD-----DIITCLYVSVELDIVISGS-KDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRI 298 (413)
Q Consensus 225 ~~~~~~~~~~~~~~~h~-----~~i~~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 298 (413)
....+.... .....+++ .++.++++.. .++.|.++|+.+++.+..+... .....++++++|++
T Consensus 117 --------~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g--~~p~~i~~~~dG~l 185 (328)
T 3dsm_A 117 --------ITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG--IQPTSLVMDKYNKM 185 (328)
T ss_dssp --------EEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS--SCBCCCEECTTSEE
T ss_pred --------EEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC--CCccceEEcCCCCE
Confidence 222222211 14456666 4444444443 4889999999999988888653 35678999999998
Q ss_pred EEEECCC----------CeEEEEEeCCceee-eeec--CCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEE--ec
Q 040361 299 VLYGDDD----------LSLHLFSINGKHLA-SSES--NGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRR--YS 363 (413)
Q Consensus 299 l~~~~~d----------~~i~i~d~~~~~~~-~~~~--~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~--~~ 363 (413)
+++...+ +.|.++|..+..+. .... ...+..++++|++++|+++.. .|.+||..+++.... +.
T Consensus 186 ~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~ 263 (328)
T 3dsm_A 186 WTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLE 263 (328)
T ss_dssp EEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBC
T ss_pred EEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeec
Confidence 7777665 78999999855443 3332 346899999999999988765 899999998876421 22
Q ss_pred CCCCcEEEEEEccC-CeEE-EE----cCCCeEEEEEecCCccc
Q 040361 364 GVGKIITSLAVTPE-ECFL-AG----TKDGCLLVYSIENRRTS 400 (413)
Q Consensus 364 ~~~~~v~~~~~~~~-~~~l-~~----~~dg~i~vw~~~~~~~~ 400 (413)
........++++|+ +.+. +. ..++.|.+|+.+ ++..
T Consensus 264 ~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~ 305 (328)
T 3dsm_A 264 FRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLI 305 (328)
T ss_dssp CCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEE
T ss_pred CCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEE
Confidence 22467899999995 6555 45 578999999987 6544
No 185
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.72 E-value=8.1e-14 Score=130.40 Aligned_cols=310 Identities=10% Similarity=0.071 Sum_probs=206.3
Q ss_pred EEEEeecCCcEEEEecCceEEEEEee------ccCCCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEE
Q 040361 65 IVYVGMLDSSIVLVNQGLTLSVKMWL------TTQLQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFT 138 (413)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (413)
++.+...++.+.+++......+..+. ...+||||+++++++.|+.+.+++..... ......+..+.....
T Consensus 169 ~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t----~~~v~~i~~G~~P~~ 244 (567)
T 1qks_A 169 FSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKE----PTTVAEIKIGSEARS 244 (567)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSS----CCEEEEEECCSEEEE
T ss_pred EEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCC----CcEeEEEecCCCCce
Confidence 33444456777777765543333222 23589999999999999988886431011 112234444566788
Q ss_pred EEec----CCCCEEEEeecCCCeEEEEEcCCCcEEEEeec----------CCC-eEEEEEECCCCCE-EEEccCCCcEEE
Q 040361 139 TMQT----PSENFLITCGNWENSFQVIALNDGRVVQSIRQ----------HRD-VVSCVAVTTDGSI-LATGSYDTTVMV 202 (413)
Q Consensus 139 ~~~~----~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~----------h~~-~v~~~~~~~~~~~-l~s~s~dg~i~i 202 (413)
+.++ |+|++++++...++.|.++|..+.+.++.+.. |.. .+..+..++++.. +++...+|.|.+
T Consensus 245 ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~ 324 (567)
T 1qks_A 245 IETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILL 324 (567)
T ss_dssp EEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred eEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEE
Confidence 8999 69999999998899999999999999887752 222 6788888887554 455566799999
Q ss_pred EEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEee-CCCcEEEEEccCCeEEEEEeC
Q 040361 203 WEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGS-KDGTCVFHTLREGRYVRSLCH 281 (413)
Q Consensus 203 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~ 281 (413)
+|....... .+..+ ........+.|+|++++++++. .++.|.++|+.+++.+..+..
T Consensus 325 vd~~~~~~~---------------------~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~v 382 (567)
T 1qks_A 325 VDYTDLNNL---------------------KTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDT 382 (567)
T ss_dssp EETTCSSEE---------------------EEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEEC
T ss_pred EecCCCccc---------------------eeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEec
Confidence 998654310 11112 2334566889999999876655 578999999999998877764
Q ss_pred -CCC-CceeeEE-EccCCc-EEEEEC-CCCeEEEEEeCC--------ceeeeeecC-CceeEEEecCCCCEEEEeCC---
Q 040361 282 -PSG-SALSKLA-ASRHGR-IVLYGD-DDLSLHLFSING--------KHLASSESN-GRLNCLELSACGQFLVCGGD--- 344 (413)
Q Consensus 282 -~~~-~~v~~~~-~~~~~~-~l~~~~-~d~~i~i~d~~~--------~~~~~~~~~-~~i~~~~~s~~~~~l~~~~~--- 344 (413)
... .+-.... ++|++. .++++. .++.|.++|... +.+...... ..-..+..+|+++++.+...
T Consensus 383 gg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~ 462 (567)
T 1qks_A 383 GGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNP 462 (567)
T ss_dssp SSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCS
T ss_pred cCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCC
Confidence 211 0112223 577744 444443 568999999874 223333322 23345778999999998763
Q ss_pred ----CCeEEEEECCCC-----c-eEEEec--------CCCCcEEEEEEccCCeEE--EE-c---CCCeEEEEEecCCccc
Q 040361 345 ----QGQIVVRSMNSL-----E-VVRRYS--------GVGKIITSLAVTPEECFL--AG-T---KDGCLLVYSIENRRTS 400 (413)
Q Consensus 345 ----dg~i~v~d~~~~-----~-~~~~~~--------~~~~~v~~~~~~~~~~~l--~~-~---~dg~i~vw~~~~~~~~ 400 (413)
.+.|.++|+.+. . ....+. .....+..+.|+|+|..+ +. + .++.|.++|.++++..
T Consensus 463 ~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~ 542 (567)
T 1qks_A 463 EAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELK 542 (567)
T ss_dssp SHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEE
T ss_pred CcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEE
Confidence 359999999876 2 112232 124578999999998643 42 2 4799999999987644
No 186
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.71 E-value=2.3e-15 Score=132.85 Aligned_cols=230 Identities=10% Similarity=0.072 Sum_probs=163.2
Q ss_pred EEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEecccccccccccc
Q 040361 138 TTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRN 217 (413)
Q Consensus 138 ~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~ 217 (413)
++.|++++..++.. ..++.++.| .++....+..+...+.+++|++++++++++..++.|.+||..+++
T Consensus 10 ~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~-------- 77 (333)
T 2dg1_A 10 TLFYSGKSNSAVPI-ISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKE-------- 77 (333)
T ss_dssp BCCSCGGGGCSSCC-CCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCC--------
T ss_pred eeeecCCccceeEE-eecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCc--------
Confidence 34455655554443 337788888 456666777777788999999999988888889999999987765
Q ss_pred ceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCC----CcEEEEEccCCeEEEEEe-CCCCCceeeEEE
Q 040361 218 MQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKD----GTCVFHTLREGRYVRSLC-HPSGSALSKLAA 292 (413)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~-~~~~~~v~~~~~ 292 (413)
.......+...+.+++++++++++++...+ +.|.+||..++.....+. ......+..+++
T Consensus 78 ---------------~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~ 142 (333)
T 2dg1_A 78 ---------------IKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVF 142 (333)
T ss_dssp ---------------EEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEE
T ss_pred ---------------EEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEE
Confidence 222222456789999999999988877766 689999998776553333 122456889999
Q ss_pred ccCCcEEEEECC------CCeEEEEEeCCceeee-eecCCceeEEEecCCCCEEE-EeCCCCeEEEEECCC-CceEEE--
Q 040361 293 SRHGRIVLYGDD------DLSLHLFSINGKHLAS-SESNGRLNCLELSACGQFLV-CGGDQGQIVVRSMNS-LEVVRR-- 361 (413)
Q Consensus 293 ~~~~~~l~~~~~------d~~i~i~d~~~~~~~~-~~~~~~i~~~~~s~~~~~l~-~~~~dg~i~v~d~~~-~~~~~~-- 361 (413)
+|+++++++... .+.|..+|.++..+.. ......+..++|+|+|++|+ +.+.++.|++||+.+ +..+..
T Consensus 143 d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~ 222 (333)
T 2dg1_A 143 DSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFG 222 (333)
T ss_dssp CTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEE
T ss_pred CCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCccccc
Confidence 999988887664 3567777766433332 23334578899999998654 455678999999963 333221
Q ss_pred ------ecCCCCcEEEEEEccCCeEEE-EcCCCeEEEEEec
Q 040361 362 ------YSGVGKIITSLAVTPEECFLA-GTKDGCLLVYSIE 395 (413)
Q Consensus 362 ------~~~~~~~v~~~~~~~~~~~l~-~~~dg~i~vw~~~ 395 (413)
+.++ ..+..++++++|.+.+ ...++.|.+|+.+
T Consensus 223 ~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 223 ATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp EEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred ceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCC
Confidence 1222 4688899999987665 5567899999984
No 187
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.70 E-value=1.5e-15 Score=147.38 Aligned_cols=241 Identities=12% Similarity=-0.019 Sum_probs=163.7
Q ss_pred ceeEEEEecCCCCEEEEeecC----CCeEEEEEcCCCcEEEEeecCCCeE--EEEEECCCCCEEEEccCCCc--------
Q 040361 134 SQCFTTMQTPSENFLITCGNW----ENSFQVIALNDGRVVQSIRQHRDVV--SCVAVTTDGSILATGSYDTT-------- 199 (413)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~g~~----d~~i~i~~~~~~~~~~~~~~h~~~v--~~~~~~~~~~~l~s~s~dg~-------- 199 (413)
..+....|+|+|++++++.+. +..|++||+.+++.+. ..+...+ ..++|+|||+.|+.++.|..
T Consensus 121 ~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~ 198 (695)
T 2bkl_A 121 VSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDER 198 (695)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGG
T ss_pred EEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCccccC
Confidence 356778999999999876543 3589999999988641 1122222 67999999999999988776
Q ss_pred -----EEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCC----cEEEEEc
Q 040361 200 -----VMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDG----TCVFHTL 270 (413)
Q Consensus 200 -----i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg----~i~vwd~ 270 (413)
|++|++.++..... .+.....|...+..+.|+|+|++|+.++.++ .|.+||.
T Consensus 199 ~~~~~v~~~~l~t~~~~~~-------------------lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~ 259 (695)
T 2bkl_A 199 PGYTTIRYHTLGTEPSKDT-------------------VVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRP 259 (695)
T ss_dssp GGGCEEEEEETTSCGGGCE-------------------EEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECT
T ss_pred CCCCEEEEEECCCCchhce-------------------EEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcC
Confidence 99999977652100 1222334556788999999999888777666 6777776
Q ss_pred cCCeEEEEEeCCCCCceeeEEEccCCcEEEEEC---CCCeEEEEEeCCce----eeeeec--CCceeEEEecCCCCEEEE
Q 040361 271 REGRYVRSLCHPSGSALSKLAASRHGRIVLYGD---DDLSLHLFSINGKH----LASSES--NGRLNCLELSACGQFLVC 341 (413)
Q Consensus 271 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~i~d~~~~~----~~~~~~--~~~i~~~~~s~~~~~l~~ 341 (413)
.++... .+..+.. .+....+ +++.+++.+. .++.|.+||+++.. .....+ ...+..++++ ++.++++
T Consensus 260 ~~~~~~-~l~~~~~-~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~ 335 (695)
T 2bkl_A 260 GEKDFR-LLVKGVG-AKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLE 335 (695)
T ss_dssp TCSSCE-EEEECSS-CCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEE
T ss_pred CCCceE-EeecCCC-ceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEE
Confidence 555433 3333322 3444555 5666444444 35789999997422 222222 4567888888 7778888
Q ss_pred eCCCCeEEEEECC-CCceEEEecCC-CCcEEEEEEccCCe-EE-EE---cCCCeEEEEEecCCcc
Q 040361 342 GGDQGQIVVRSMN-SLEVVRRYSGV-GKIITSLAVTPEEC-FL-AG---TKDGCLLVYSIENRRT 399 (413)
Q Consensus 342 ~~~dg~i~v~d~~-~~~~~~~~~~~-~~~v~~~~~~~~~~-~l-~~---~~dg~i~vw~~~~~~~ 399 (413)
...|+..+||.+. +++....+..+ ...+..+.++|++. ++ +. ...+.|++||+.+++.
T Consensus 336 ~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 336 YLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 8899988887654 45666666655 56788888999864 33 22 2457899999988764
No 188
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.69 E-value=1.3e-13 Score=124.47 Aligned_cols=237 Identities=13% Similarity=0.077 Sum_probs=163.8
Q ss_pred eeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCC--cEEEEEeccccccc
Q 040361 135 QCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDT--TVMVWEVIRARAPE 212 (413)
Q Consensus 135 ~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg--~i~iw~~~~~~~~~ 212 (413)
....+++.++++ |+++...++.|++||..+++........ .... ++|+++++.|+++..++ .|.+|+........
T Consensus 132 ~P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 132 YMWGIAAVGNNT-VLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CEEEEEECSTTE-EEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CceEEEEeCCCC-EEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 456778888887 4444555789999999888776665543 3333 99999999998888766 67777765543100
Q ss_pred cccccceeecCCCceeeecCceeeeec-CCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEE----EeCCCCCce
Q 040361 213 KRVRNMQIEAPRKDYVIVETPFHILCG-HDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRS----LCHPSGSAL 287 (413)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~----~~~~~~~~v 287 (413)
.+..+.. ....+.+++++|+...|+.+..++.|+.||..++..... .........
T Consensus 209 --------------------~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P 268 (409)
T 3hrp_A 209 --------------------RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNP 268 (409)
T ss_dssp --------------------EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSS
T ss_pred --------------------EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCc
Confidence 0101112 345678899999555555577789999999987764322 111111111
Q ss_pred e-eEEEccC-CcEEEEECCCCeEEEEEeCCceeeeeecC---------------CceeEEEecCCCCEEEEeC-CCCeEE
Q 040361 288 S-KLAASRH-GRIVLYGDDDLSLHLFSINGKHLASSESN---------------GRLNCLELSACGQFLVCGG-DQGQIV 349 (413)
Q Consensus 288 ~-~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---------------~~i~~~~~s~~~~~l~~~~-~dg~i~ 349 (413)
. .++++|+ +.++++...++.|+.|+.++......... .....++++|+|+++++-. .++.|+
T Consensus 269 ~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~ 348 (409)
T 3hrp_A 269 GPYLIYYFVDSNFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLR 348 (409)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEE
T ss_pred cccEEEeCCCCEEEEEeCCCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEE
Confidence 3 8999994 67777777889999999987643333321 3478999999999888888 899999
Q ss_pred EEECCCCceEEEecCC---------------CCcEEEEEEccCCeEE-EEcCCCeEEEEEec
Q 040361 350 VRSMNSLEVVRRYSGV---------------GKIITSLAVTPEECFL-AGTKDGCLLVYSIE 395 (413)
Q Consensus 350 v~d~~~~~~~~~~~~~---------------~~~v~~~~~~~~~~~l-~~~~dg~i~vw~~~ 395 (413)
.|++.+++.. .+.++ -.....+++++++.++ +-..++.|+.++++
T Consensus 349 ~~~~~~G~v~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 349 KLDILDGYVS-TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp EEETTTTEEE-EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred EEECCCCEEE-EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence 9998777643 33333 2458999999998766 56778889888763
No 189
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.69 E-value=9.4e-15 Score=128.56 Aligned_cols=201 Identities=14% Similarity=0.118 Sum_probs=151.0
Q ss_pred CCeEEEEEECCCCCEEEEccCC------------------------CcEEEEEeccccccccccccceeecCCCceeeec
Q 040361 176 RDVVSCVAVTTDGSILATGSYD------------------------TTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVE 231 (413)
Q Consensus 176 ~~~v~~~~~~~~~~~l~s~s~d------------------------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (413)
-+.+.+++++|+|+++++.+.+ +.|.+||..+++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~---------------------- 80 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAE---------------------- 80 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCC----------------------
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCe----------------------
Confidence 4678999999999999888777 468888876665
Q ss_pred Cceeeee-cCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCe-EEEEEeC--------CCCCceeeEEEcc-CCcEEE
Q 040361 232 TPFHILC-GHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGR-YVRSLCH--------PSGSALSKLAASR-HGRIVL 300 (413)
Q Consensus 232 ~~~~~~~-~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~--------~~~~~v~~~~~~~-~~~~l~ 300 (413)
....+. ++-.....++++++++++++...++.|++||..... .+..+.. ..-.....++++| ++.+++
T Consensus 81 -~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv 159 (329)
T 3fvz_A 81 -ILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFV 159 (329)
T ss_dssp -EEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEE
T ss_pred -EEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEE
Confidence 222222 344578899999999998888889999999985432 4555531 1123578999999 788888
Q ss_pred EEC-CCCeEEEEEeCCceeeeeecC-----------CceeEEEecCC-CCEEEEeCCCCeEEEEECCCCceEEEec--CC
Q 040361 301 YGD-DDLSLHLFSINGKHLASSESN-----------GRLNCLELSAC-GQFLVCGGDQGQIVVRSMNSLEVVRRYS--GV 365 (413)
Q Consensus 301 ~~~-~d~~i~i~d~~~~~~~~~~~~-----------~~i~~~~~s~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~--~~ 365 (413)
+.+ .++.|++||.++..+...... ..+..++++|+ +.++++...++.|++||..+++.+..+. .+
T Consensus 160 ~d~~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~ 239 (329)
T 3fvz_A 160 SDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASF 239 (329)
T ss_dssp EECSSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTT
T ss_pred EeCCCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEecccc
Confidence 886 689999999887766654211 23789999998 7788888889999999999899888874 45
Q ss_pred CCcEEEEEEccCCeEEE--------EcCCCeEEEEEecCCccc
Q 040361 366 GKIITSLAVTPEECFLA--------GTKDGCLLVYSIENRRTS 400 (413)
Q Consensus 366 ~~~v~~~~~~~~~~~l~--------~~~dg~i~vw~~~~~~~~ 400 (413)
...+.+++|+| +.++. ...+..|++|++.+++..
T Consensus 240 ~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~ 281 (329)
T 3fvz_A 240 GRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEII 281 (329)
T ss_dssp TTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEE
T ss_pred CCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEE
Confidence 66789999999 44332 233458999998877543
No 190
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.68 E-value=3.3e-13 Score=116.78 Aligned_cols=235 Identities=10% Similarity=-0.009 Sum_probs=170.5
Q ss_pred ceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEe-ecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccc
Q 040361 134 SQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSI-RQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPE 212 (413)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~ 212 (413)
..+..+++.++|..+++. ..++.|.+||.. ++..... ..+...+.++++++++..+++...++.|..|+.. +..
T Consensus 15 ~~~~~i~~d~~g~l~v~~-~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-- 89 (299)
T 2z2n_A 15 TGPYGITVSDKGKVWITQ-HKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-- 89 (299)
T ss_dssp CCEEEEEECTTSCEEEEE-TTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE--
T ss_pred CCccceEECCCCCEEEEe-cCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE--
Confidence 456778888888876653 337899999987 6544322 2355789999999999988887778889999865 220
Q ss_pred cccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEE
Q 040361 213 KRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAA 292 (413)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~ 292 (413)
....+......+..+++.++++++++...++.|..||. +++............+..+++
T Consensus 90 --------------------~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~ 148 (299)
T 2z2n_A 90 --------------------KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITL 148 (299)
T ss_dssp --------------------EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEE
T ss_pred --------------------EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEE
Confidence 01111224457889999999988888777889999998 655443322222446889999
Q ss_pred ccCCcEEEEECCCCeEEEEEeCCceeee-e-ecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEE-ecCCCCcE
Q 040361 293 SRHGRIVLYGDDDLSLHLFSINGKHLAS-S-ESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRR-YSGVGKII 369 (413)
Q Consensus 293 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~-~~~~~~~v 369 (413)
++++.++++...++.|..||..++.... . .....+..++++++|+++++...++.|.+||. +++.... ...+...+
T Consensus 149 ~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~ 227 (299)
T 2z2n_A 149 GSDNALWFTENQNNAIGRITESGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARP 227 (299)
T ss_dssp CTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCE
T ss_pred cCCCCEEEEeCCCCEEEEEcCCCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCc
Confidence 9999888888888899999995443332 1 23456789999999998888777889999999 6664332 23345679
Q ss_pred EEEEEccCCeEEEE-cCCCeEEEEEec
Q 040361 370 TSLAVTPEECFLAG-TKDGCLLVYSIE 395 (413)
Q Consensus 370 ~~~~~~~~~~~l~~-~~dg~i~vw~~~ 395 (413)
.+++++++|.+.++ ..++.|..|+..
T Consensus 228 ~~i~~~~~g~l~v~~~~~~~i~~~d~~ 254 (299)
T 2z2n_A 228 HAITAGAGIDLWFTEWGANKIGRLTSN 254 (299)
T ss_dssp EEEEECSTTCEEEEETTTTEEEEEETT
T ss_pred eeEEECCCCCEEEeccCCceEEEECCC
Confidence 99999999876654 467889999973
No 191
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.68 E-value=1.9e-14 Score=124.70 Aligned_cols=201 Identities=8% Similarity=0.002 Sum_probs=148.6
Q ss_pred EEEeecCCCeEEEEEECCCCC-EEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEE
Q 040361 169 VQSIRQHRDVVSCVAVTTDGS-ILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCL 247 (413)
Q Consensus 169 ~~~~~~h~~~v~~~~~~~~~~-~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~ 247 (413)
+..+..+.....+++|+|+++ .++++..++.|..|+..++ ...+..+...+.++
T Consensus 20 ~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-------------------------~~~~~~~~~~~~~l 74 (296)
T 3e5z_A 20 ARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-------------------------LSPEMHPSHHQNGH 74 (296)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-------------------------EEEEESSCSSEEEE
T ss_pred EEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-------------------------eEEEECCCCCccee
Confidence 344445566778999999998 7888888999999998654 12334566778999
Q ss_pred EEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCC---CCCceeeEEEccCCcEEEEE----C-------------CCCe
Q 040361 248 YVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHP---SGSALSKLAASRHGRIVLYG----D-------------DDLS 307 (413)
Q Consensus 248 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~----~-------------~d~~ 307 (413)
+++++++++++...++.|.+||..+++........ ....+..++++|+|+++++. + ..+.
T Consensus 75 ~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~ 154 (296)
T 3e5z_A 75 CLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRW 154 (296)
T ss_dssp EECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCE
T ss_pred eECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcE
Confidence 99999998888777889999999888765433211 12346789999999988873 2 1346
Q ss_pred EEEEEeCCceeeeeecCCceeEEEecCCCCEEEEeCCCCeEEEEECC-CCce---EEEecCCCCcEEEEEEccCCeEEEE
Q 040361 308 LHLFSINGKHLASSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMN-SLEV---VRRYSGVGKIITSLAVTPEECFLAG 383 (413)
Q Consensus 308 i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~-~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~ 383 (413)
|..++..+..............++|+|+|+.+++.+.++.|++||+. +++. ...+..+...+.+++++++|++.++
T Consensus 155 l~~~~~~g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~ 234 (296)
T 3e5z_A 155 VFRLAPDGTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWAS 234 (296)
T ss_dssp EEEECTTSCEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEE
T ss_pred EEEECCCCCEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEE
Confidence 77777664443334455667899999999988888888999999987 5554 2333334556778999999987776
Q ss_pred cCCCeEEEEEec
Q 040361 384 TKDGCLLVYSIE 395 (413)
Q Consensus 384 ~~dg~i~vw~~~ 395 (413)
. ++.|.+|+.+
T Consensus 235 ~-~~~v~~~~~~ 245 (296)
T 3e5z_A 235 A-GDGVHVLTPD 245 (296)
T ss_dssp E-TTEEEEECTT
T ss_pred c-CCeEEEECCC
Confidence 6 8899999986
No 192
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.68 E-value=2e-13 Score=127.68 Aligned_cols=227 Identities=11% Similarity=0.043 Sum_probs=166.8
Q ss_pred CCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEec--cccccccccccceeec
Q 040361 145 ENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVI--RARAPEKRVRNMQIEA 222 (413)
Q Consensus 145 ~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~--~~~~~~~~~~~~~~~~ 222 (413)
++.++++...++.|.++|..+++.+..+... ..+..+.|+|||+++++++.|+.|.+||+. +.+
T Consensus 166 ~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~------------- 231 (567)
T 1qks_A 166 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT------------- 231 (567)
T ss_dssp GGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC-------------
T ss_pred CceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCc-------------
Confidence 4566666777999999999999999988743 356789999999999999999999999985 443
Q ss_pred CCCceeeecCceeeeecCCCCeEEEEEe----cCCCEEEEeeC-CCcEEEEEccCCeEEEEEeCCC----------CCce
Q 040361 223 PRKDYVIVETPFHILCGHDDIITCLYVS----VELDIVISGSK-DGTCVFHTLREGRYVRSLCHPS----------GSAL 287 (413)
Q Consensus 223 ~~~~~~~~~~~~~~~~~h~~~i~~~~~~----~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~----------~~~v 287 (413)
.+..+... .....++|+ |+++++++++. ++.+.++|..+.+.+..+.... ...+
T Consensus 232 ----------~v~~i~~G-~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rv 300 (567)
T 1qks_A 232 ----------TVAEIKIG-SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRV 300 (567)
T ss_dssp ----------EEEEEECC-SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCE
T ss_pred ----------EeEEEecC-CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCce
Confidence 33444432 335789999 69998877665 5899999999999988775321 2256
Q ss_pred eeEEEccCCc-EEEEECCCCeEEEEEeCCc---eeeeeecCCceeEEEecCCCCEEEEeC-CCCeEEEEECCCCceEEEe
Q 040361 288 SKLAASRHGR-IVLYGDDDLSLHLFSINGK---HLASSESNGRLNCLELSACGQFLVCGG-DQGQIVVRSMNSLEVVRRY 362 (413)
Q Consensus 288 ~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~v~d~~~~~~~~~~ 362 (413)
..+..++++. +++....+|.|.++|.... .+...........+.|+|+|++++++. .++.|.++|+.+++.+..+
T Consensus 301 a~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i 380 (567)
T 1qks_A 301 AAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIE 380 (567)
T ss_dssp EEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred EEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEE
Confidence 7788888754 4555667799999998742 222234455677899999999887654 6789999999999887766
Q ss_pred cC-----CCCcEEEEEEccC-CeEEE-E-cCCCeEEEEEecCC
Q 040361 363 SG-----VGKIITSLAVTPE-ECFLA-G-TKDGCLLVYSIENR 397 (413)
Q Consensus 363 ~~-----~~~~v~~~~~~~~-~~~l~-~-~~dg~i~vw~~~~~ 397 (413)
.. |.+.-..+ ++|+ +.+.+ + ..++.|.+++..++
T Consensus 381 ~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~ 422 (567)
T 1qks_A 381 DTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPE 422 (567)
T ss_dssp ECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTT
T ss_pred eccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCC
Confidence 53 32212222 6887 55444 3 35689999999874
No 193
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.67 E-value=6.5e-14 Score=123.01 Aligned_cols=218 Identities=6% Similarity=-0.014 Sum_probs=159.0
Q ss_pred CCCeEEEEEcCCCcEEEEee------cCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCce
Q 040361 154 WENSFQVIALNDGRVVQSIR------QHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDY 227 (413)
Q Consensus 154 ~d~~i~i~~~~~~~~~~~~~------~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 227 (413)
.++.|.+||.++++....+. ........+.+. +++.+++...++.|.+||..+++
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~------------------ 75 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFK------------------ 75 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCC------------------
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccE------------------
Confidence 47899999999998776542 122446777774 45556666678999999998887
Q ss_pred eeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCC----ceeeEEEccCCcEEEEEC
Q 040361 228 VIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGS----ALSKLAASRHGRIVLYGD 303 (413)
Q Consensus 228 ~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~ 303 (413)
.+..+. .......++++++++.+++...++.|.+||+.+++....+...... ....+++ .++.++++..
T Consensus 76 -----~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~ 148 (328)
T 3dsm_A 76 -----EVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCW 148 (328)
T ss_dssp -----EEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEEC
T ss_pred -----EEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcC
Confidence 344453 3466789999998865555548999999999999988877653211 4567777 4555555554
Q ss_pred -CCCeEEEEEeCCce-eeeeecCCceeEEEecCCCCEEEEeCCC----------CeEEEEECCCCceEEEecCC-CCcEE
Q 040361 304 -DDLSLHLFSINGKH-LASSESNGRLNCLELSACGQFLVCGGDQ----------GQIVVRSMNSLEVVRRYSGV-GKIIT 370 (413)
Q Consensus 304 -~d~~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d----------g~i~v~d~~~~~~~~~~~~~-~~~v~ 370 (413)
.++.|.++|+.... ............++++|+|++++++..+ +.|.++|..+++....+... ...+.
T Consensus 149 ~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~ 228 (328)
T 3dsm_A 149 SYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPS 228 (328)
T ss_dssp TTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCE
T ss_pred CCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCce
Confidence 48899999998544 4444445567889999999988777655 79999999999888777532 34689
Q ss_pred EEEEccCCeEE-EEcCCCeEEEEEecCCcc
Q 040361 371 SLAVTPEECFL-AGTKDGCLLVYSIENRRT 399 (413)
Q Consensus 371 ~~~~~~~~~~l-~~~~dg~i~vw~~~~~~~ 399 (413)
.++|+|++..+ ++.. .|.+||..+++.
T Consensus 229 ~la~~~d~~~lyv~~~--~v~~~d~~t~~~ 256 (328)
T 3dsm_A 229 EVQLNGTRDTLYWINN--DIWRMPVEADRV 256 (328)
T ss_dssp EEEECTTSCEEEEESS--SEEEEETTCSSC
T ss_pred eEEEecCCCEEEEEcc--EEEEEECCCCce
Confidence 99999986544 4443 899999988764
No 194
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.66 E-value=5e-13 Score=119.01 Aligned_cols=235 Identities=9% Similarity=-0.011 Sum_probs=161.6
Q ss_pred EEEecCCCCEEEEeec---------CCCeEEEEEcCCCcEEEEeecC-------CCeEEEEEECCCCCEEEEccC--CCc
Q 040361 138 TTMQTPSENFLITCGN---------WENSFQVIALNDGRVVQSIRQH-------RDVVSCVAVTTDGSILATGSY--DTT 199 (413)
Q Consensus 138 ~~~~~~~~~~l~~~g~---------~d~~i~i~~~~~~~~~~~~~~h-------~~~v~~~~~~~~~~~l~s~s~--dg~ 199 (413)
.+.++|+++.+.++.. .++.|.+||..+.+.+..+..- ......++|+|||++|+++.. ++.
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 7888999999998753 3678999999998888777532 123458999999999998874 578
Q ss_pred EEEEEeccccccccccccceeecCCCceeeecCceee-eecCCCCeEEEEEecCC-CEEEEeeCCCcEEEEEccCCeEEE
Q 040361 200 VMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHI-LCGHDDIITCLYVSVEL-DIVISGSKDGTCVFHTLREGRYVR 277 (413)
Q Consensus 200 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~i~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~ 277 (413)
|.++| .+++ .+.. +. ... ++.+.+++ +.+++.+.||.+.++|. +++...
T Consensus 150 v~viD-~t~~-----------------------~~~~~i~-~~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~ 200 (373)
T 2mad_H 150 VGLVV-QGGS-----------------------SDDQLLS-SPT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAG 200 (373)
T ss_pred EEEEE-CCCC-----------------------EEeEEcC-CCc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEE
Confidence 99999 8776 2222 22 111 23444554 45667778999999999 887664
Q ss_pred EEeC----CCCCc-eeeEEEccCCcEEEEECCCCeEEEEEeCCceee---eee-----------cCCceeEEEecCCCCE
Q 040361 278 SLCH----PSGSA-LSKLAASRHGRIVLYGDDDLSLHLFSINGKHLA---SSE-----------SNGRLNCLELSACGQF 338 (413)
Q Consensus 278 ~~~~----~~~~~-v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~---~~~-----------~~~~i~~~~~s~~~~~ 338 (413)
.... ....+ .....+.+++..++..+..+.+.+.|+.+.... ... .......++++|+++.
T Consensus 201 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~ 280 (373)
T 2mad_H 201 AGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDG 280 (373)
T ss_pred EEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCE
Confidence 3321 11111 123455666555555556789999998643211 111 1223445789999988
Q ss_pred EEEeCC----------CCeEEEEECCCCceEEEecCCCCcEEEEEEccCCe-EE-EEc-CCCeEEEEEecCCccccc
Q 040361 339 LVCGGD----------QGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEEC-FL-AGT-KDGCLLVYSIENRRTSLP 402 (413)
Q Consensus 339 l~~~~~----------dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l-~~~-~dg~i~vw~~~~~~~~~~ 402 (413)
++++.. .+.|.++|..+++.+.++.. .....+++|+|||+ ++ ++. .++.|.+||+++++....
T Consensus 281 lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 281 IYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred EEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 777643 35899999999999998863 34689999999986 44 555 589999999999876543
No 195
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.66 E-value=1.5e-14 Score=123.37 Aligned_cols=187 Identities=13% Similarity=0.086 Sum_probs=150.2
Q ss_pred CCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCC-CCeEEEEEecCCCEEEEeeCCCcE
Q 040361 187 DGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHD-DIITCLYVSVELDIVISGSKDGTC 265 (413)
Q Consensus 187 ~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~i~~~~~~~~~~~l~s~~~dg~i 265 (413)
.++.|++++.|+.|.+||.++++ .+..+..+. ..+.++.++|+++++++ .++.|
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~-----------------------~~w~~~~~~~~~~~~~~~~pdG~ilvs--~~~~V 58 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKE-----------------------IVWEYPLEKGWECNSVAATKAGEILFS--YSKGA 58 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTE-----------------------EEEEEECCTTCCCCEEEECTTSCEEEE--CBSEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCe-----------------------EEEEeCCCccCCCcCeEECCCCCEEEe--CCCCE
Confidence 45789999999999999998887 456666655 46889999999998883 47889
Q ss_pred EEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECC-CCeEEEEEeCCceeeeeecC-------CceeEEEecCCCC
Q 040361 266 VFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDD-DLSLHLFSINGKHLASSESN-------GRLNCLELSACGQ 337 (413)
Q Consensus 266 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~-------~~i~~~~~s~~~~ 337 (413)
..||. +++.+..+..+....+.++.+.++|+++++.+. ++.+..+|.+++.+...... .....+++.++|+
T Consensus 59 ~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~ 137 (276)
T 3no2_A 59 KMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGN 137 (276)
T ss_dssp EEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSC
T ss_pred EEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCC
Confidence 99999 899999998754457888999999999999877 78888888888776654311 2345667899999
Q ss_pred EEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEccCCeEE-EEcCCCeEEEEEecCCcccc
Q 040361 338 FLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFL-AGTKDGCLLVYSIENRRTSL 401 (413)
Q Consensus 338 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~dg~i~vw~~~~~~~~~ 401 (413)
++++...++.|..||.. ++.+.++... ..+.++...++|.++ +++.++.|..+|.++++...
T Consensus 138 ~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w 200 (276)
T 3no2_A 138 YLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVR 200 (276)
T ss_dssp EEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEE
T ss_pred EEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEE
Confidence 99999999999999998 9999888754 345667788888766 46667789999988776543
No 196
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.66 E-value=3.1e-13 Score=117.98 Aligned_cols=233 Identities=11% Similarity=0.101 Sum_probs=162.1
Q ss_pred eEEEEecCCCCEEEEe------ecCCCeEEEEEcCCCcEEEEee----cCCCeEEEEEECCC-CCEEEEccCCCcEEEEE
Q 040361 136 CFTTMQTPSENFLITC------GNWENSFQVIALNDGRVVQSIR----QHRDVVSCVAVTTD-GSILATGSYDTTVMVWE 204 (413)
Q Consensus 136 ~~~~~~~~~~~~l~~~------g~~d~~i~i~~~~~~~~~~~~~----~h~~~v~~~~~~~~-~~~l~s~s~dg~i~iw~ 204 (413)
...++|.+++..++++ +..++.|.+||..+++...... ++...+.+++++++ ++++++.. .+.|.+||
T Consensus 20 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l~~~d 98 (314)
T 1pjx_A 20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGLLVVQ 98 (314)
T ss_dssp CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEEEEEE
T ss_pred ccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCEEEEe
Confidence 3567778778665551 3348899999988887653322 24567899999999 76555544 44788898
Q ss_pred eccccccccccccceeecCCCceeeecCceeee-e-----cCCCCeEEEEEecCCCEEEEeeCC---------------C
Q 040361 205 VIRARAPEKRVRNMQIEAPRKDYVIVETPFHIL-C-----GHDDIITCLYVSVELDIVISGSKD---------------G 263 (413)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~h~~~i~~~~~~~~~~~l~s~~~d---------------g 263 (413)
.. ++ ...+ . .....+.+++++++++++++...+ +
T Consensus 99 ~~-g~------------------------~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~ 153 (314)
T 1pjx_A 99 TD-GT------------------------FEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFG 153 (314)
T ss_dssp TT-SC------------------------EEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCE
T ss_pred CC-CC------------------------EEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCC
Confidence 76 44 1111 0 112357899999999888777655 5
Q ss_pred cEEEEEccCCeEEEEEeCCCCCceeeEEEc----cCCcEEE-EECCCCeEEEEEeC-Ccee------eeee-cC-CceeE
Q 040361 264 TCVFHTLREGRYVRSLCHPSGSALSKLAAS----RHGRIVL-YGDDDLSLHLFSIN-GKHL------ASSE-SN-GRLNC 329 (413)
Q Consensus 264 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~-~~~~d~~i~i~d~~-~~~~------~~~~-~~-~~i~~ 329 (413)
.|..||.. ++....... ......++++ ++++.++ +...++.|.+||++ ...+ .... +. ..+..
T Consensus 154 ~l~~~~~~-g~~~~~~~~--~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~ 230 (314)
T 1pjx_A 154 SIYCFTTD-GQMIQVDTA--FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADG 230 (314)
T ss_dssp EEEEECTT-SCEEEEEEE--ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEE
T ss_pred eEEEECCC-CCEEEeccC--CCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCc
Confidence 67777765 554333222 1246788999 9986554 44678899999976 2221 1111 12 56788
Q ss_pred EEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEccCCe-EEE-EcCCCeEEEEEecCC
Q 040361 330 LELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEEC-FLA-GTKDGCLLVYSIENR 397 (413)
Q Consensus 330 ~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~-~~~dg~i~vw~~~~~ 397 (413)
++++++|+++++...++.|.+||..+++.+..+..+...+.+++|++++. +++ ...++.|..|++...
T Consensus 231 i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 231 MDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp EEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred eEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 99999999888887888999999987887777776767899999999986 444 556789999998753
No 197
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.66 E-value=2.6e-14 Score=139.76 Aligned_cols=241 Identities=12% Similarity=0.076 Sum_probs=161.5
Q ss_pred eeEEEEecCCCCEEEEeecCCC----eEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCc-----------
Q 040361 135 QCFTTMQTPSENFLITCGNWEN----SFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTT----------- 199 (413)
Q Consensus 135 ~~~~~~~~~~~~~l~~~g~~d~----~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~----------- 199 (413)
.+....|+|||++++++.+.+| .|++||+.+++.+... .+...+..++|+|| +.|+.++.|+.
T Consensus 164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~ 241 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNY 241 (741)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------CCC
T ss_pred EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcccccccccCCC
Confidence 5667899999999998766444 5999999999876532 12222357899999 99988877654
Q ss_pred ---EEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCC-----cEEEEEcc
Q 040361 200 ---VMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDG-----TCVFHTLR 271 (413)
Q Consensus 200 ---i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg-----~i~vwd~~ 271 (413)
|++|++.++..... .+.....+...+..+.|+|||++|+..+.++ .|++||+.
T Consensus 242 ~~~v~~~~lgt~~~~~~-------------------lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~ 302 (741)
T 1yr2_A 242 NQTVWLHRLGTPQSADQ-------------------PVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVT 302 (741)
T ss_dssp CCEEEEEETTSCGGGCE-------------------EEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEE
T ss_pred CCEEEEEECCCCchhCE-------------------EEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECC
Confidence 78888765541000 1111122334578999999999888776544 89999998
Q ss_pred CCe-E-EEEEeCCCCCceeeEEEccCCcEEEEECC----CCeEEEEEeCCc--eeee-e-ecCCceeEEEecCCCCEEEE
Q 040361 272 EGR-Y-VRSLCHPSGSALSKLAASRHGRIVLYGDD----DLSLHLFSINGK--HLAS-S-ESNGRLNCLELSACGQFLVC 341 (413)
Q Consensus 272 ~~~-~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~--~~~~-~-~~~~~i~~~~~s~~~~~l~~ 341 (413)
++. . ...+..+.. ..... ++|+++.|+..+. ++.|.+||+.+. .... . .+...+..++++ ++.++++
T Consensus 303 ~~~~~~~~~l~~~~~-~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~ 379 (741)
T 1yr2_A 303 NGKIGPVTALIPDLK-AQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFAS 379 (741)
T ss_dssp TTEECCCEEEECSSS-SCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEE
T ss_pred CCCCcccEEecCCCC-ceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEE
Confidence 873 1 444544332 33333 3488888777654 456999998752 2222 2 334456677777 5667788
Q ss_pred eCCCCeEEEEECC-CCceEEEecC-CCCcEEEEEEccCCe-EE-E---EcCCCeEEEEEecCCcc
Q 040361 342 GGDQGQIVVRSMN-SLEVVRRYSG-VGKIITSLAVTPEEC-FL-A---GTKDGCLLVYSIENRRT 399 (413)
Q Consensus 342 ~~~dg~i~v~d~~-~~~~~~~~~~-~~~~v~~~~~~~~~~-~l-~---~~~dg~i~vw~~~~~~~ 399 (413)
...|+..+||.+. +++....+.. +...+..+.++|++. ++ + ....+.|++||+.+++.
T Consensus 380 ~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 380 YIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp EEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred EEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 8888887776554 4566666664 356789999999864 33 2 23458899999988753
No 198
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.65 E-value=1.1e-12 Score=113.63 Aligned_cols=233 Identities=8% Similarity=0.011 Sum_probs=164.7
Q ss_pred ceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEE-EeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccc
Q 040361 134 SQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQ-SIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPE 212 (413)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~ 212 (413)
..+..+.+.+++..+++ ...++.|..||.. ++... .+......+.++++.++++++++...++.|..++.. ++.
T Consensus 62 ~~~~~i~~~~~g~l~v~-~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-- 136 (300)
T 2qc5_A 62 AKVMCLIVSSLGDIWFT-ENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTI-- 136 (300)
T ss_dssp CCEEEEEECTTSCEEEE-ETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCE--
T ss_pred CcceeEEECCCCCEEEE-ecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCE--
Confidence 34567777888876665 4447889999987 65532 222244678999999999988887778889999876 431
Q ss_pred cccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeC-CCCCceeeEE
Q 040361 213 KRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCH-PSGSALSKLA 291 (413)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~~v~~~~ 291 (413)
....+......+..+++.++++++++...++.|..+|. +++... +.. .....+..++
T Consensus 137 --------------------~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~ 194 (300)
T 2qc5_A 137 --------------------YEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE-YPLPTNAAAPVGIT 194 (300)
T ss_dssp --------------------EEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEE
T ss_pred --------------------EEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE-eeCCCCCCCcceEE
Confidence 01112223456789999999997777766889999998 565543 322 2234688999
Q ss_pred EccCCcEEEEECCCCeEEEEEeCCceeeee--ecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEE-EecCCCCc
Q 040361 292 ASRHGRIVLYGDDDLSLHLFSINGKHLASS--ESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVR-RYSGVGKI 368 (413)
Q Consensus 292 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~-~~~~~~~~ 368 (413)
+++++.++++....+.|..||..+...... .....+.+++++++|++.++...++.|..||. +++... .+......
T Consensus 195 ~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~ 273 (300)
T 2qc5_A 195 SGNDGALWFVEIMGNKIGRITTTGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAE 273 (300)
T ss_dssp ECTTSSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCC
T ss_pred ECCCCCEEEEccCCCEEEEEcCCCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEECCccCCc
Confidence 999998888887788999999865543332 23456889999999997777777899999998 454332 23334456
Q ss_pred EEEEEEccCCeEEEEcCCCeEEEEEec
Q 040361 369 ITSLAVTPEECFLAGTKDGCLLVYSIE 395 (413)
Q Consensus 369 v~~~~~~~~~~~l~~~~dg~i~vw~~~ 395 (413)
+.+++++++|.+..++.. .|..++.+
T Consensus 274 ~~~i~~~~~g~l~v~~~~-~i~~~~p~ 299 (300)
T 2qc5_A 274 PHGITFGKDGSVWFALKC-KIGKLNLN 299 (300)
T ss_dssp CCCEEECTTSCEEEECSS-EEEEEEEC
T ss_pred cceeEeCCCCCEEEEccC-ceEEeCCC
Confidence 889999999987776654 67777653
No 199
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.63 E-value=6.8e-14 Score=119.37 Aligned_cols=197 Identities=8% Similarity=-0.030 Sum_probs=142.4
Q ss_pred eEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEecccccccccc
Q 040361 136 CFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRV 215 (413)
Q Consensus 136 ~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~ 215 (413)
+..+++.++++.+++ .. ++.|.+||................+..++++++++.+++...++.|.+|+..+..
T Consensus 69 p~~i~~~~~g~l~v~-~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~------ 140 (270)
T 1rwi_B 69 PQGLAVDGAGTVYVT-DF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKT------ 140 (270)
T ss_dssp CCCEEECTTCCEEEE-ET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCS------
T ss_pred cceeEECCCCCEEEE-cC-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCce------
Confidence 455677888884444 44 8899999986654432222233678999999999988887778899999643332
Q ss_pred ccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccC
Q 040361 216 RNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRH 295 (413)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 295 (413)
...........+.+++++++++++++...++.|.+||............. ...+..++++++
T Consensus 141 -----------------~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~-~~~p~~i~~d~~ 202 (270)
T 1rwi_B 141 -----------------QTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTD-ITAPWGIAVDEA 202 (270)
T ss_dssp -----------------CEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSS-CCSEEEEEECTT
T ss_pred -----------------eEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccC-CCCceEEEECCC
Confidence 11111122345678999999998887777889999998766544322222 246889999999
Q ss_pred CcEEEEECCCCeEEEEEeCCceeeeee--cCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCce
Q 040361 296 GRIVLYGDDDLSLHLFSINGKHLASSE--SNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEV 358 (413)
Q Consensus 296 ~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~ 358 (413)
|.++++...++.|.+||..+....... ....+.+++++++|+++++...++.|++|++...+.
T Consensus 203 g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 203 GTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp CCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred CCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence 988888888899999999865544332 235689999999999888889999999999876544
No 200
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.62 E-value=1.3e-13 Score=133.89 Aligned_cols=229 Identities=10% Similarity=-0.017 Sum_probs=151.8
Q ss_pred cCCCCEEEEeecCCC----eEEEEEcCCCcEEEEee------cCCCeEEEEEECCCCCEEE-----EccCCCcEEEEEec
Q 040361 142 TPSENFLITCGNWEN----SFQVIALNDGRVVQSIR------QHRDVVSCVAVTTDGSILA-----TGSYDTTVMVWEVI 206 (413)
Q Consensus 142 ~~~~~~l~~~g~~d~----~i~i~~~~~~~~~~~~~------~h~~~v~~~~~~~~~~~l~-----s~s~dg~i~iw~~~ 206 (413)
+++|++++......+ .+.+.+...++....+. +|...+..++|||||++|+ .|+.+..|++||+.
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~ 155 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD 155 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence 478888887665333 34555555555443332 4566899999999999999 56667899999998
Q ss_pred cccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCc-------------EEEEEccCC
Q 040361 207 RARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGT-------------CVFHTLREG 273 (413)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~-------------i~vwd~~~~ 273 (413)
+++... ...+... ....++|+||++.|+.++.|.. |++|++.++
T Consensus 156 tg~~~~---------------------~~~~~~~--~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~ 212 (695)
T 2bkl_A 156 SGEWSK---------------------VDVIEGG--KYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTE 212 (695)
T ss_dssp TCCBCS---------------------SCCBSCC--TTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSC
T ss_pred CCCCcC---------------------CcccCcc--cccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCC
Confidence 887210 0011111 1257899999999999888776 999999887
Q ss_pred eE--EEEEeCC-CCCceeeEEEccCCcEEEEECCCC----eEEEEEeCCcee-eeeecCCceeEEEecCCCCEEEEeC--
Q 040361 274 RY--VRSLCHP-SGSALSKLAASRHGRIVLYGDDDL----SLHLFSINGKHL-ASSESNGRLNCLELSACGQFLVCGG-- 343 (413)
Q Consensus 274 ~~--~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~----~i~i~d~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~-- 343 (413)
.. ...+... +...+..+.++|+|++|+..+.++ .|++++..+... ....+........+ ++|++++.+.
T Consensus 213 ~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~l~~~s~~~ 291 (695)
T 2bkl_A 213 PSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDRFYVLTDEG 291 (695)
T ss_dssp GGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTEEEEEECTT
T ss_pred chhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCcEEEEECCC
Confidence 62 2222221 123678899999999988877655 677776653333 23334445555556 5666544444
Q ss_pred -CCCeEEEEECCCCce---EEEecCC-CCcEEEEEEccCCeEE-EEcCCCeEEEEEec
Q 040361 344 -DQGQIVVRSMNSLEV---VRRYSGV-GKIITSLAVTPEECFL-AGTKDGCLLVYSIE 395 (413)
Q Consensus 344 -~dg~i~v~d~~~~~~---~~~~~~~-~~~v~~~~~~~~~~~l-~~~~dg~i~vw~~~ 395 (413)
.++.|.+||+.+++. ...+..+ ...+..++|+ ++.++ +...|+..++|.+.
T Consensus 292 ~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~ 348 (695)
T 2bkl_A 292 APRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVAT 348 (695)
T ss_dssp CTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred CCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence 358999999987653 3333333 4568888998 55555 58889988888775
No 201
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.61 E-value=6.2e-12 Score=108.80 Aligned_cols=235 Identities=11% Similarity=-0.011 Sum_probs=168.8
Q ss_pred ceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEE-eecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccc
Q 040361 134 SQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQS-IRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPE 212 (413)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~ 212 (413)
..+..+.+.+++..+++ ...++.|.+||.. ++.... +..+...+..+++.++++..++...++.|..||.. ++.
T Consensus 20 ~~p~~i~~d~~g~l~v~-~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~-- 94 (300)
T 2qc5_A 20 SGPYGITSSEDGKVWFT-QHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF-- 94 (300)
T ss_dssp CCEEEEEECTTSCEEEE-ETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE--
T ss_pred CCcceeeECCCCCEEEE-cCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe--
Confidence 45567778888886665 4347899999987 665432 22344678999999999988877778889999876 431
Q ss_pred cccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEE
Q 040361 213 KRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAA 292 (413)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~ 292 (413)
....+......+.++++.++++++++...++.|..+|.. ++............+..+++
T Consensus 95 --------------------~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~ 153 (300)
T 2qc5_A 95 --------------------TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITL 153 (300)
T ss_dssp --------------------EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEE
T ss_pred --------------------EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEE
Confidence 011112234568899999999988887778899999987 65543222212346889999
Q ss_pred ccCCcEEEEECCCCeEEEEEeCCceeeee--ecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEE-ecCCCCcE
Q 040361 293 SRHGRIVLYGDDDLSLHLFSINGKHLASS--ESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRR-YSGVGKII 369 (413)
Q Consensus 293 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~-~~~~~~~v 369 (413)
+++++++++...++.|..||..+...... .....+..++++++|++.++....+.|.+||. +++.... +..+...+
T Consensus 154 d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~ 232 (300)
T 2qc5_A 154 GSDNALWFTENQNNSIGRITNTGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARP 232 (300)
T ss_dssp CTTSSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCE
T ss_pred CCCCCEEEEecCCCeEEEECCCCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCc
Confidence 99999777777788999999865544322 23346889999999988888777889999998 5554332 33445678
Q ss_pred EEEEEccCCeEEE-EcCCCeEEEEEec
Q 040361 370 TSLAVTPEECFLA-GTKDGCLLVYSIE 395 (413)
Q Consensus 370 ~~~~~~~~~~~l~-~~~dg~i~vw~~~ 395 (413)
.+++++++|.+.+ ...++.|..|+..
T Consensus 233 ~~i~~d~~g~l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 233 HAITAGKNSEIWFTEWGANQIGRITND 259 (300)
T ss_dssp EEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred eEEEECCCCCEEEeccCCCeEEEECCC
Confidence 9999999987665 4456889999873
No 202
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.61 E-value=1.8e-13 Score=133.23 Aligned_cols=231 Identities=11% Similarity=0.041 Sum_probs=152.0
Q ss_pred CCCCEEEEeecCCC----eEEEEEcCCCcEEEEee------cCCCeEEEEEECCCCCEEEEccCCC-----cEEEEEecc
Q 040361 143 PSENFLITCGNWEN----SFQVIALNDGRVVQSIR------QHRDVVSCVAVTTDGSILATGSYDT-----TVMVWEVIR 207 (413)
Q Consensus 143 ~~~~~l~~~g~~d~----~i~i~~~~~~~~~~~~~------~h~~~v~~~~~~~~~~~l~s~s~dg-----~i~iw~~~~ 207 (413)
|+|++++..-...+ .+.+.+...++....+. +|...+..++|+|||++|+.++.++ .|++||+.+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 78888777654332 34444544444433222 2445789999999999998765543 899999988
Q ss_pred ccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCc----------------EEEEEcc
Q 040361 208 ARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGT----------------CVFHTLR 271 (413)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~----------------i~vwd~~ 271 (413)
++ ....... ...+..++|+||++.|+.++.++. |++|++.
T Consensus 161 g~-----------------------~~~~~~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~ 216 (710)
T 2xdw_A 161 AK-----------------------ELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLG 216 (710)
T ss_dssp TE-----------------------EEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETT
T ss_pred CC-----------------------CCccccc-CcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECC
Confidence 76 1221111 122667999999999998887766 9999998
Q ss_pred CCeEE--EEEeCC-CCCceeeEEEccCCcEEEEECC-----CCeEEEEEeCC------c--eeee-eecCCceeEEEecC
Q 040361 272 EGRYV--RSLCHP-SGSALSKLAASRHGRIVLYGDD-----DLSLHLFSING------K--HLAS-SESNGRLNCLELSA 334 (413)
Q Consensus 272 ~~~~~--~~~~~~-~~~~v~~~~~~~~~~~l~~~~~-----d~~i~i~d~~~------~--~~~~-~~~~~~i~~~~~s~ 334 (413)
+++.. ..+... +...+..+.|+|+|++|+..+. +..|++||+.+ . .... ..+...+.. .|+|
T Consensus 217 t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~ 295 (710)
T 2xdw_A 217 TDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTN 295 (710)
T ss_dssp SCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEE
T ss_pred CCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEec
Confidence 87632 222222 1234678999999999887654 56899999874 2 2222 333333433 5889
Q ss_pred CCCEEEEeCC----CCeEEEEECCCCc--eEEEecCCCC--cEEEEEEccCCeEE-EEcCCCe--EEEEEecCCc
Q 040361 335 CGQFLVCGGD----QGQIVVRSMNSLE--VVRRYSGVGK--IITSLAVTPEECFL-AGTKDGC--LLVYSIENRR 398 (413)
Q Consensus 335 ~~~~l~~~~~----dg~i~v~d~~~~~--~~~~~~~~~~--~v~~~~~~~~~~~l-~~~~dg~--i~vw~~~~~~ 398 (413)
+|+.|+..+. ++.|.+||+.++. ....+..|.. .+..+.|++++.++ +...|+. |.+|++.+++
T Consensus 296 dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~ 370 (710)
T 2xdw_A 296 EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGA 370 (710)
T ss_dssp ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCC
T ss_pred cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCC
Confidence 9987776544 3469999998764 2344444543 68889999777666 4667775 5666765554
No 203
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.60 E-value=3.5e-13 Score=118.47 Aligned_cols=236 Identities=16% Similarity=0.114 Sum_probs=162.1
Q ss_pred EEecCCCCEEEEeec---------CCCeEEEEEcCCCcEEEEeecCC-------CeEEEEEECCCCCEEEEccC--CCcE
Q 040361 139 TMQTPSENFLITCGN---------WENSFQVIALNDGRVVQSIRQHR-------DVVSCVAVTTDGSILATGSY--DTTV 200 (413)
Q Consensus 139 ~~~~~~~~~l~~~g~---------~d~~i~i~~~~~~~~~~~~~~h~-------~~v~~~~~~~~~~~l~s~s~--dg~i 200 (413)
+.++|+++.+.++.. .++.|.+||..+++.+..+.... .....++|+|||++|+++.. ++.|
T Consensus 83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~V 162 (386)
T 3sjl_D 83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAV 162 (386)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEE
T ss_pred EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeE
Confidence 888999999887652 36789999999999998885321 24557899999999988764 6899
Q ss_pred EEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccC-CeEEEEE
Q 040361 201 MVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLRE-GRYVRSL 279 (413)
Q Consensus 201 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~ 279 (413)
.++|+.+.+ .+..+.-. + . ...+....+.+++.+.||.+.+.++.+ ++.....
T Consensus 163 sVID~~t~~-----------------------vv~tI~v~-g-~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~ 216 (386)
T 3sjl_D 163 GVVDLEGKA-----------------------FKRMLDVP-D-C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITH 216 (386)
T ss_dssp EEEETTTTE-----------------------EEEEEECC-S-E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEE
T ss_pred EEEECCCCc-----------------------EEEEEECC-C-c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEee
Confidence 999998887 33334221 1 1 222333455777888899999999876 5543222
Q ss_pred eCC---CCCce-eeEEEc-cCCcEEEEECCCCeEEEEEeCCceeee---ee-----------cCCceeEEEecCCCCEEE
Q 040361 280 CHP---SGSAL-SKLAAS-RHGRIVLYGDDDLSLHLFSINGKHLAS---SE-----------SNGRLNCLELSACGQFLV 340 (413)
Q Consensus 280 ~~~---~~~~v-~~~~~~-~~~~~l~~~~~d~~i~i~d~~~~~~~~---~~-----------~~~~i~~~~~s~~~~~l~ 340 (413)
... ....+ ....|. ++|++++ .+.+|.+++.|+.+..... .. ..+....++++++++.++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~ly 295 (386)
T 3sjl_D 217 TEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIY 295 (386)
T ss_dssp CCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEE
T ss_pred cceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEE
Confidence 111 11122 224554 5776555 4557899999997543211 11 123345678899998888
Q ss_pred EeCC----------CCeEEEEECCCCceEEEecCCCCcEEEEEEccCCe--EEE-EcCCCeEEEEEecCCccccc
Q 040361 341 CGGD----------QGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEEC--FLA-GTKDGCLLVYSIENRRTSLP 402 (413)
Q Consensus 341 ~~~~----------dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~-~~~dg~i~vw~~~~~~~~~~ 402 (413)
+... .+.|.++|+.+++.+.++.. ...+.++++++|++ +++ ...++.|.++|..+++....
T Consensus 296 V~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v-g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~ 369 (386)
T 3sjl_D 296 LLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRS 369 (386)
T ss_dssp EEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred EEeccccccccCCCCCEEEEEECCCCeEEEEEEC-CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEE
Confidence 7642 25799999999999998874 34688999999974 445 55689999999999875543
No 204
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.60 E-value=1.9e-12 Score=112.08 Aligned_cols=215 Identities=12% Similarity=0.004 Sum_probs=149.2
Q ss_pred EEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccc
Q 040361 137 FTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVR 216 (413)
Q Consensus 137 ~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~ 216 (413)
-...|+++++.++.+...++.|+.||..+++.. .+. ....+.+++++++++++++ . ++.|.+||..+++..
T Consensus 16 Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~----- 86 (297)
T 3g4e_A 16 ESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAV----- 86 (297)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEE-----
T ss_pred cCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEE-----
Confidence 356778888888888887899999999887653 332 4578999999999995554 3 567999998766410
Q ss_pred cceeecCCCceeeecCceeeeec--CCCCeEEEEEecCCCEEEEeeCC---------CcEEEEEccC-CeEEEEEeCCCC
Q 040361 217 NMQIEAPRKDYVIVETPFHILCG--HDDIITCLYVSVELDIVISGSKD---------GTCVFHTLRE-GRYVRSLCHPSG 284 (413)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~--h~~~i~~~~~~~~~~~l~s~~~d---------g~i~vwd~~~-~~~~~~~~~~~~ 284 (413)
.+..... ....+..++++++++++++...+ ..-.+|.+.. ++....... .
T Consensus 87 ----------------~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~--~ 148 (297)
T 3g4e_A 87 ----------------VLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQ--V 148 (297)
T ss_dssp ----------------EEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEE--E
T ss_pred ----------------EEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeec--c
Confidence 0111110 12347889999999977654321 2334554432 333322221 1
Q ss_pred CceeeEEEccCCcEEE-EECCCCeEEEEEeC--Cceee------ee-ecCCceeEEEecCCCCEEEEeCCCCeEEEEECC
Q 040361 285 SALSKLAASRHGRIVL-YGDDDLSLHLFSIN--GKHLA------SS-ESNGRLNCLELSACGQFLVCGGDQGQIVVRSMN 354 (413)
Q Consensus 285 ~~v~~~~~~~~~~~l~-~~~~d~~i~i~d~~--~~~~~------~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~ 354 (413)
...+.++|+|+++.++ +.+.++.|..|+++ ...+. .. ...+.+..++++++|++.++....+.|.+||..
T Consensus 149 ~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~ 228 (297)
T 3g4e_A 149 DISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPV 228 (297)
T ss_dssp SBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTT
T ss_pred ccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCC
Confidence 2467899999998664 55667899999974 22111 11 123567899999999988887778899999999
Q ss_pred CCceEEEecCCCCcEEEEEEc-cCC
Q 040361 355 SLEVVRRYSGVGKIITSLAVT-PEE 378 (413)
Q Consensus 355 ~~~~~~~~~~~~~~v~~~~~~-~~~ 378 (413)
+++.+..+..+...+++++|. |++
T Consensus 229 tG~~~~~i~~p~~~~t~~~f~g~d~ 253 (297)
T 3g4e_A 229 TGKRLQTVKLPVDKTTSCCFGGKNY 253 (297)
T ss_dssp TCCEEEEEECSSSBEEEEEEESGGG
T ss_pred CceEEEEEECCCCCceEEEEeCCCC
Confidence 999998888777789999998 774
No 205
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.57 E-value=4.1e-13 Score=120.23 Aligned_cols=233 Identities=14% Similarity=0.029 Sum_probs=156.9
Q ss_pred CCCCEEEEeecCC----CeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEcc----------CCCcEEEEEeccc
Q 040361 143 PSENFLITCGNWE----NSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGS----------YDTTVMVWEVIRA 208 (413)
Q Consensus 143 ~~~~~l~~~g~~d----~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s----------~dg~i~iw~~~~~ 208 (413)
++++.+.++...+ +.|.++|..+++.+..+..-..+ .++++||+++|+++. .++.|.++|..+.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 4566666655434 79999999999999999865555 899999999988876 4678999999887
Q ss_pred cccccccccceeecCCCceeeecCceeeeecC-------CCCeEEEEEecCCCEEEEeeC--CCcEEEEEccCCeEEEEE
Q 040361 209 RAPEKRVRNMQIEAPRKDYVIVETPFHILCGH-------DDIITCLYVSVELDIVISGSK--DGTCVFHTLREGRYVRSL 279 (413)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-------~~~i~~~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~ 279 (413)
+ .+..+.-- ......+.++||+++++.+.. ++.|.+.|+.+++.+.++
T Consensus 160 ~-----------------------vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I 216 (426)
T 3c75_H 160 L-----------------------PIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRML 216 (426)
T ss_dssp C-----------------------EEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEE
T ss_pred c-----------------------EEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEE
Confidence 6 22222210 122346788899888887764 577888898888887776
Q ss_pred eCCCCC------ceeeE-------------------------------------EEccCCcEEEEECCCCeEEEEEeCCc
Q 040361 280 CHPSGS------ALSKL-------------------------------------AASRHGRIVLYGDDDLSLHLFSINGK 316 (413)
Q Consensus 280 ~~~~~~------~v~~~-------------------------------------~~~~~~~~l~~~~~d~~i~i~d~~~~ 316 (413)
..+... .-..+ .+.+++..++.....+.+.+.|+.+.
T Consensus 217 ~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~ 296 (426)
T 3c75_H 217 DVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAE 296 (426)
T ss_dssp ECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSS
T ss_pred EcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCC
Confidence 542100 00012 23444444444444556666776533
Q ss_pred eeeee---e-----------cCCceeEEEecCCCCEEEEeCC----------CCeEEEEECCCCceEEEecCCCCcEEEE
Q 040361 317 HLASS---E-----------SNGRLNCLELSACGQFLVCGGD----------QGQIVVRSMNSLEVVRRYSGVGKIITSL 372 (413)
Q Consensus 317 ~~~~~---~-----------~~~~i~~~~~s~~~~~l~~~~~----------dg~i~v~d~~~~~~~~~~~~~~~~v~~~ 372 (413)
..... . .......++++|+++.+++... .+.|.++|..+++.+.++... ....++
T Consensus 297 ~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg-~~P~gi 375 (426)
T 3c75_H 297 GATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG-HEIDSI 375 (426)
T ss_dssp CEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEE
T ss_pred ceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC-CCcCeE
Confidence 22111 0 0111223789999887777642 357999999999999988742 358899
Q ss_pred EEccCCe-EE-EEc-CCCeEEEEEecCCcccc
Q 040361 373 AVTPEEC-FL-AGT-KDGCLLVYSIENRRTSL 401 (413)
Q Consensus 373 ~~~~~~~-~l-~~~-~dg~i~vw~~~~~~~~~ 401 (413)
.|+|||+ ++ +.. .++.|.++|+.+.+...
T Consensus 376 a~spDg~~~lyv~n~~s~~VsVID~~t~kvv~ 407 (426)
T 3c75_H 376 NVSQDAEPLLYALSAGTQTLHIYDAATGEELR 407 (426)
T ss_dssp EECCSSSCEEEEEETTTTEEEEEETTTCCEEE
T ss_pred EEccCCCEEEEEEcCCCCeEEEEECCCCCEEE
Confidence 9999976 44 554 69999999999987653
No 206
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.57 E-value=1.7e-12 Score=112.86 Aligned_cols=227 Identities=11% Similarity=0.032 Sum_probs=153.1
Q ss_pred eEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEecccccccccc
Q 040361 136 CFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRV 215 (413)
Q Consensus 136 ~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~ 215 (413)
....+|+++++.|+.++..++.|..|+. +++ ...+..+...+..++++++|+++++...++.|..|+.+ ++. ..
T Consensus 47 ~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~--~~- 120 (305)
T 3dr2_A 47 SEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQA--HL- 120 (305)
T ss_dssp EEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE--EE-
T ss_pred ccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCE--EE-
Confidence 3457789999988888888899999998 455 34555577789999999999977766666789999874 330 00
Q ss_pred ccceeecCCCceeeecCceeeeec-CCCCeEEEEEecCCCEEEE----eeC-------------CCcEEEEEccCCeEEE
Q 040361 216 RNMQIEAPRKDYVIVETPFHILCG-HDDIITCLYVSVELDIVIS----GSK-------------DGTCVFHTLREGRYVR 277 (413)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~-h~~~i~~~~~~~~~~~l~s----~~~-------------dg~i~vwd~~~~~~~~ 277 (413)
......+ ....+..++++++++++++ |.. .+.|..+|..+++...
T Consensus 121 -----------------~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~ 183 (305)
T 3dr2_A 121 -----------------LVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQR 183 (305)
T ss_dssp -----------------EECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEE
T ss_pred -----------------EEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEE
Confidence 0000111 1234677999999998886 432 2567788876666443
Q ss_pred EEeCCCCCceeeEEEccCCcEEEEECCC------CeEEEEEeCCceeee-----eecCCceeEEEecCCCCEEEEeCCCC
Q 040361 278 SLCHPSGSALSKLAASRHGRIVLYGDDD------LSLHLFSINGKHLAS-----SESNGRLNCLELSACGQFLVCGGDQG 346 (413)
Q Consensus 278 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~-----~~~~~~i~~~~~s~~~~~l~~~~~dg 346 (413)
.. . ......++|+|+++.|+++... +.|+.|++.+..+.. ....+.+..++++++|++. +++.+
T Consensus 184 ~~-~--~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lw-v~~~~- 258 (305)
T 3dr2_A 184 MA-D--LDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLW-SSSGT- 258 (305)
T ss_dssp EE-E--ESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEE-ECCSS-
T ss_pred Ee-c--CCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEE-EecCC-
Confidence 33 1 2356789999999977776554 789999987433221 1123456678999999944 44444
Q ss_pred eEEEEECCCCceEEEecCCCCcEEEEEEccCCe-EEEEcCCCeEEEEE
Q 040361 347 QIVVRSMNSLEVVRRYSGVGKIITSLAVTPEEC-FLAGTKDGCLLVYS 393 (413)
Q Consensus 347 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~dg~i~vw~ 393 (413)
.|.+|+. +++.+..+..+. .+.+++|.+++. +..++.++ ++.++
T Consensus 259 gv~~~~~-~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 259 GVCVFDS-DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp EEEEECT-TSCEEEEEECSS-CCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred cEEEECC-CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence 5999998 577777776555 588999998864 44555543 44333
No 207
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.54 E-value=3.1e-13 Score=119.37 Aligned_cols=180 Identities=12% Similarity=0.035 Sum_probs=131.3
Q ss_pred eEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEE
Q 040361 178 VVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVI 257 (413)
Q Consensus 178 ~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~ 257 (413)
.++.+++++...++++|+.++ +++|++...+..... . ..+ ..+.. ...+.. |+.++| ++++|+
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~-------~-~~~----~~~~~-~~~lp~-V~~l~f--d~~~L~ 101 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITS-------D-STP----LTFKW-EKEIPD-VIFVCF--HGDQVL 101 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHS-------S-SCC----CCCSE-EEECTT-EEEEEE--ETTEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhcc-------c-ccc----ccceE-EeeCCC-eeEEEE--CCCEEE
Confidence 688999999999999999885 566998655410000 0 000 00112 224666 999999 889999
Q ss_pred EeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCceeeeeecCCceeEEEecCCCC
Q 040361 258 SGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKHLASSESNGRLNCLELSACGQ 337 (413)
Q Consensus 258 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~ 337 (413)
++ .++.|++||+++.......... ...+.++.+.+. .++++..||.|.+||++...... ....|+|++|||+|
T Consensus 102 v~-~~~~l~v~dv~sl~~~~~~~~~-~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~--~~~~Vs~v~WSpkG- 174 (388)
T 1xip_A 102 VS-TRNALYSLDLEELSEFRTVTSF-EKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ--LAQNVTSFDVTNSQ- 174 (388)
T ss_dssp EE-ESSEEEEEESSSTTCEEEEEEC-SSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE--EEESEEEEEECSSE-
T ss_pred EE-cCCcEEEEEchhhhccCcccee-ecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc--ccCCceEEEEcCCc-
Confidence 88 8899999999876654444433 345777666554 38888999999999998444332 34689999999999
Q ss_pred EEEEeCCCCeEEEEECCCCce--EEEe------c---CCCCcEEEEEEccCCeEEE
Q 040361 338 FLVCGGDQGQIVVRSMNSLEV--VRRY------S---GVGKIITSLAVTPEECFLA 382 (413)
Q Consensus 338 ~l~~~~~dg~i~v~d~~~~~~--~~~~------~---~~~~~v~~~~~~~~~~~l~ 382 (413)
++.|..||.+++|+...++. ..++ . +|...|.++.|.+++.+++
T Consensus 175 -~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv 229 (388)
T 1xip_A 175 -LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLA 229 (388)
T ss_dssp -EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEE
T ss_pred -eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEE
Confidence 67888999999999887765 5556 2 3678899999999988774
No 208
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.53 E-value=3.2e-11 Score=105.74 Aligned_cols=210 Identities=14% Similarity=0.081 Sum_probs=146.2
Q ss_pred EEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccc
Q 040361 137 FTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVR 216 (413)
Q Consensus 137 ~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~ 216 (413)
....|+++++.++.++..++.|..||..+++.. .+. ....+.+++|+++++++++. .+ .|.+||..+++.
T Consensus 52 egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~------ 121 (326)
T 2ghs_A 52 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVL------ 121 (326)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCE------
T ss_pred cCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcE------
Confidence 345678888888887877899999999877653 333 35679999999999877764 44 488898876651
Q ss_pred cceeecCCCceeeecCceeeeec-----CCCCeEEEEEecCCCEEEEeeC------CCcEEEEEccCCeEEEEEeCCCCC
Q 040361 217 NMQIEAPRKDYVIVETPFHILCG-----HDDIITCLYVSVELDIVISGSK------DGTCVFHTLREGRYVRSLCHPSGS 285 (413)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~-----h~~~i~~~~~~~~~~~l~s~~~------dg~i~vwd~~~~~~~~~~~~~~~~ 285 (413)
..+.. ....+..++++++++++++... .+.|..+| +++....... ..
T Consensus 122 ------------------~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~--~~ 179 (326)
T 2ghs_A 122 ------------------TLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFAD--IS 179 (326)
T ss_dssp ------------------EEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEE--ES
T ss_pred ------------------EEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCC--Cc
Confidence 11111 1235789999999997765542 24555555 5554332221 12
Q ss_pred ceeeEEEccCCcEEEE-ECCCCeEEEEEeC--Cc-ee-----e-ee-ecCCceeEEEecCCCCEEEEeCCCCeEEEEECC
Q 040361 286 ALSKLAASRHGRIVLY-GDDDLSLHLFSIN--GK-HL-----A-SS-ESNGRLNCLELSACGQFLVCGGDQGQIVVRSMN 354 (413)
Q Consensus 286 ~v~~~~~~~~~~~l~~-~~~d~~i~i~d~~--~~-~~-----~-~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~ 354 (413)
....++|+|+++.++. ...++.|.+||++ +. .+ . .. .....+..++++++|++.++...++.|.+||.
T Consensus 180 ~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~- 258 (326)
T 2ghs_A 180 IPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT- 258 (326)
T ss_dssp SEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-
T ss_pred ccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-
Confidence 4678999999986654 4567899999985 22 11 1 11 12356788999999988777766789999998
Q ss_pred CCceEEEecCCCCcEEEEEEc-cCCe
Q 040361 355 SLEVVRRYSGVGKIITSLAVT-PEEC 379 (413)
Q Consensus 355 ~~~~~~~~~~~~~~v~~~~~~-~~~~ 379 (413)
+++.+..+..+...+++++|+ +++.
T Consensus 259 ~g~~~~~i~~~~~~~~~~af~g~d~~ 284 (326)
T 2ghs_A 259 DGNHIARYEVPGKQTTCPAFIGPDAS 284 (326)
T ss_dssp TCCEEEEEECSCSBEEEEEEESTTSC
T ss_pred CCCEEEEEECCCCCcEEEEEecCCCC
Confidence 677777777777789999998 8853
No 209
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.52 E-value=3.9e-12 Score=111.86 Aligned_cols=282 Identities=12% Similarity=0.082 Sum_probs=171.5
Q ss_pred CCcEEEEecCceEEEEEeec-----cCCCCCCceeeecC----------CCCccccCCCcCCCcccCCCCc--ccceecc
Q 040361 72 DSSIVLVNQGLTLSVKMWLT-----TQLQSGGNFTFSGS----------QDPFFGVGADILSPRNVGSPLA--ESFELGS 134 (413)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~-----~~~s~~~~~l~~~~----------~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 134 (413)
++.+.+++......+..+.. ..+||||++++.+. .++.+.+++.......-..... .......
T Consensus 58 ~~~V~ViD~~t~~v~~~I~vG~~P~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~ 137 (386)
T 3sjl_D 58 VTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGT 137 (386)
T ss_dssp SEEEEEEETTTTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSC
T ss_pred CCEEEEEECCCCeEEEEEECCCCCcEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCC
Confidence 35666666544443333321 35799999998775 3567877543221100000000 0111122
Q ss_pred eeEEEEecCCCCEEEEeecC-CCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEecc-ccccc
Q 040361 135 QCFTTMQTPSENFLITCGNW-ENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIR-ARAPE 212 (413)
Q Consensus 135 ~~~~~~~~~~~~~l~~~g~~-d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~-~~~~~ 212 (413)
....+.++|+|+++.++... ++.|.++|+.+++.+.++..-. . ...+....+.+++.+.||++.+.++.+ ++...
T Consensus 138 ~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g-~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~ 214 (386)
T 3sjl_D 138 YPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD-C--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEI 214 (386)
T ss_dssp CGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS-E--EEEEEEETTEEEEEETTSCEEEEECCSSSCCEE
T ss_pred CCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC-c--ceeecCCCceeEEECCCCCEEEEECCCCCeEEE
Confidence 45567889999999887653 7899999999999999886422 1 222333456777888889988888866 33100
Q ss_pred cccccceeecCCCceeeecCceeeeecCCCCeE-EEEEe-cCCCEEEEeeCCCcEEEEEccCCe--EEEEEeC-C-----
Q 040361 213 KRVRNMQIEAPRKDYVIVETPFHILCGHDDIIT-CLYVS-VELDIVISGSKDGTCVFHTLREGR--YVRSLCH-P----- 282 (413)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~-~~~~~-~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~-~----- 282 (413)
.. ...+..-...+. ...|. ++++++. .+.+|.|.+.|+.... ....+.. .
T Consensus 215 --~~-----------------~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~ 274 (386)
T 3sjl_D 215 --TH-----------------TEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERA 274 (386)
T ss_dssp --EE-----------------CCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHH
T ss_pred --ee-----------------cceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceecccccccc
Confidence 00 000000111111 23554 5665444 5558999999996553 3322220 0
Q ss_pred ---CCCceeeEEEccCCcEEEEECC----------CCeEEEEEeCC-ceeeeeecCCceeEEEecCCCC-EEEEe-CCCC
Q 040361 283 ---SGSALSKLAASRHGRIVLYGDD----------DLSLHLFSING-KHLASSESNGRLNCLELSACGQ-FLVCG-GDQG 346 (413)
Q Consensus 283 ---~~~~v~~~~~~~~~~~l~~~~~----------d~~i~i~d~~~-~~~~~~~~~~~i~~~~~s~~~~-~l~~~-~~dg 346 (413)
.......++++++++.+++... .+.|.++|+.. +.+........+..+++++|++ +|++. ..++
T Consensus 275 ~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~~~ 354 (386)
T 3sjl_D 275 DGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDK 354 (386)
T ss_dssp TTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEETTTT
T ss_pred ccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcCCCC
Confidence 0123455788999888887642 25799999984 4444555556888999999997 66664 5689
Q ss_pred eEEEEECCCCceEEEecCCCCcEEEEEEccC
Q 040361 347 QIVVRSMNSLEVVRRYSGVGKIITSLAVTPE 377 (413)
Q Consensus 347 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~ 377 (413)
.|.++|..+++.+.++... +..+.|.+++|
T Consensus 355 ~VsViD~~t~k~~~~i~~~-~~p~~l~~s~d 384 (386)
T 3sjl_D 355 TLYIHDAESGEELRSVNQL-GHGPQVITTAD 384 (386)
T ss_dssp EEEEEETTTCCEEEEECCC-CSSCCEEEECC
T ss_pred eEEEEECCCCcEEEEecCC-CCCceeEECCc
Confidence 9999999999999998743 33455667665
No 210
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.52 E-value=4.8e-13 Score=118.12 Aligned_cols=168 Identities=11% Similarity=0.045 Sum_probs=128.3
Q ss_pred eeEEEEecCCCCEEEEeecCCCeEEEEEcCCCc-----------EEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEE
Q 040361 135 QCFTTMQTPSENFLITCGNWENSFQVIALNDGR-----------VVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVW 203 (413)
Q Consensus 135 ~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~-----------~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw 203 (413)
.+..+++++....++++|. + .+.+|++.+.+ ..... .+.. |+.++| |+++|+++ .++.|++|
T Consensus 39 ~~nlLais~~~gll~a~~~-~-~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASG-S-KAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp CCBCEEEETTTTEEEEEET-T-EEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEE
T ss_pred cccEEEEcCCCCEEEEeCC-C-EEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEE
Confidence 3556777888888887664 4 67779865332 11222 3666 999999 89999999 88999999
Q ss_pred EeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCC
Q 040361 204 EVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPS 283 (413)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 283 (413)
|+.+.. .......|...+.++.+.+. .+++++.||.|.+||+.++.... +
T Consensus 112 dv~sl~-----------------------~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-~---- 161 (388)
T 1xip_A 112 DLEELS-----------------------EFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-L---- 161 (388)
T ss_dssp ESSSTT-----------------------CEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-E----
T ss_pred Echhhh-----------------------ccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-c----
Confidence 997765 23345567777888777654 38889999999999999887653 2
Q ss_pred CCceeeEEEccCCcEEEEECCCCeEEEEEeCCcee---eee----------ecCCceeEEEecCCCCEEEE
Q 040361 284 GSALSKLAASRHGRIVLYGDDDLSLHLFSINGKHL---ASS----------ESNGRLNCLELSACGQFLVC 341 (413)
Q Consensus 284 ~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---~~~----------~~~~~i~~~~~s~~~~~l~~ 341 (413)
...|++++|+|+| ++.|..||.+++|+.++..+ ... .+...|.++.|.+++.++++
T Consensus 162 ~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 162 AQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred cCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 2379999999999 67889999999999987663 222 25788999999999998886
No 211
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.52 E-value=2.2e-10 Score=102.00 Aligned_cols=246 Identities=8% Similarity=-0.006 Sum_probs=153.2
Q ss_pred CCCCCCceeeecC----------CCCccccCCCcCCCcccCCCCc--ccceecceeEEEEecCCCCEEEEeecC-CCeEE
Q 040361 93 QLQSGGNFTFSGS----------QDPFFGVGADILSPRNVGSPLA--ESFELGSQCFTTMQTPSENFLITCGNW-ENSFQ 159 (413)
Q Consensus 93 ~~s~~~~~l~~~~----------~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~g~~-d~~i~ 159 (413)
.+||||++++.+. .++.+.+++.......-..+.. ...........+.++|+|++++++... ++.|.
T Consensus 72 ~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~ 151 (373)
T 2mad_H 72 VAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVG 151 (373)
T ss_pred EECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEE
Confidence 5799999998875 3566766532111000000000 011111234578899999999987654 58899
Q ss_pred EEEcCCCcEEEE-eecCCCeEEEEEECCCC-CEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeee
Q 040361 160 VIALNDGRVVQS-IRQHRDVVSCVAVTTDG-SILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHIL 237 (413)
Q Consensus 160 i~~~~~~~~~~~-~~~h~~~v~~~~~~~~~-~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (413)
++| .+++.+.. +... . ++.+.|++ +.+++.+.||.+.+++. +++.... .. ....+
T Consensus 152 viD-~t~~~~~~~i~~~-~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~-~~----------------~~~~~ 208 (373)
T 2mad_H 152 LVV-QGGSSDDQLLSSP-T---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGA-GL----------------VGAML 208 (373)
T ss_pred EEE-CCCCEEeEEcCCC-c---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEE-Ee----------------ccccc
Confidence 999 99999887 6532 2 23444554 45667778999999999 6652100 00 00000
Q ss_pred ecCCCC-eEEEEEecCCCEEEEeeCCCcEEEEEccCCe--EEEEEeCCC---------CCceeeEEEccCCcEEEEECC-
Q 040361 238 CGHDDI-ITCLYVSVELDIVISGSKDGTCVFHTLREGR--YVRSLCHPS---------GSALSKLAASRHGRIVLYGDD- 304 (413)
Q Consensus 238 ~~h~~~-i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~---------~~~v~~~~~~~~~~~l~~~~~- 304 (413)
....+ .....+.+++..++..+..+.+.+.|+..+. .+..+.... ......+.++++++.+++...
T Consensus 209 -~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~ 287 (373)
T 2mad_H 209 -TAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSE 287 (373)
T ss_pred -cCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEecc
Confidence 11112 1234456665554444467899999986543 222322110 112344788999888877643
Q ss_pred ---------CCeEEEEEeCCcee-eeeecCCceeEEEecCCCC-EEEEeC-CCCeEEEEECCCCceEEEe
Q 040361 305 ---------DLSLHLFSINGKHL-ASSESNGRLNCLELSACGQ-FLVCGG-DQGQIVVRSMNSLEVVRRY 362 (413)
Q Consensus 305 ---------d~~i~i~d~~~~~~-~~~~~~~~i~~~~~s~~~~-~l~~~~-~dg~i~v~d~~~~~~~~~~ 362 (413)
.+.|.++|+...++ ...........++|+|||+ +++++. .++.|.++|+.+++.+..+
T Consensus 288 ~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 288 QSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred CCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 35799999985444 5566666789999999999 777776 5899999999999999884
No 212
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.51 E-value=3e-12 Score=125.17 Aligned_cols=227 Identities=12% Similarity=0.056 Sum_probs=145.0
Q ss_pred cCCCCEEEEeecCCC----eEEEEEcC---CCcEEEEe------ecCCCeEEEEEECCCCCEEEEccCC-----CcEEEE
Q 040361 142 TPSENFLITCGNWEN----SFQVIALN---DGRVVQSI------RQHRDVVSCVAVTTDGSILATGSYD-----TTVMVW 203 (413)
Q Consensus 142 ~~~~~~l~~~g~~d~----~i~i~~~~---~~~~~~~~------~~h~~~v~~~~~~~~~~~l~s~s~d-----g~i~iw 203 (413)
+|+|++++......+ .+.+.+.. .++....+ .+|...+..++|+|||++|+.++.+ ..|++|
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 194 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV 194 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 488998887665333 33444444 34433322 2244478899999999999887654 469999
Q ss_pred EeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCc--------------EEEEE
Q 040361 204 EVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGT--------------CVFHT 269 (413)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~--------------i~vwd 269 (413)
|+.+++. +. ...+...+..++|+|| +.|+.++.++. |++|+
T Consensus 195 dl~tg~~-----------------------~~-~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~ 249 (741)
T 1yr2_A 195 GVADGKP-----------------------LA-DELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHR 249 (741)
T ss_dssp ETTTCCE-----------------------EE-EEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEE
T ss_pred ECCCCCC-----------------------CC-ccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEE
Confidence 9988861 11 1111122357889999 88888776654 88999
Q ss_pred ccCCeE--EEEEeCCC-CCceeeEEEccCCcEEEEECCC-----CeEEEEEeCCc--e-eee-eecCCceeEEEecCCCC
Q 040361 270 LREGRY--VRSLCHPS-GSALSKLAASRHGRIVLYGDDD-----LSLHLFSINGK--H-LAS-SESNGRLNCLELSACGQ 337 (413)
Q Consensus 270 ~~~~~~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~--~-~~~-~~~~~~i~~~~~s~~~~ 337 (413)
+.++.. ...+.... ...+..+.|+|+|++|+..+.+ ..|++||+.+. . ... .......... ++|+|+
T Consensus 250 lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~ 328 (741)
T 1yr2_A 250 LGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGD 328 (741)
T ss_dssp TTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETT
T ss_pred CCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCC
Confidence 977652 22232221 1247889999999988876643 48999999754 2 222 2333334444 358898
Q ss_pred EEEEeCC----CCeEEEEECCCC--ceEEEecCCCCcEEEEEEccCCeEE-EEcCCCeEEEEEec
Q 040361 338 FLVCGGD----QGQIVVRSMNSL--EVVRRYSGVGKIITSLAVTPEECFL-AGTKDGCLLVYSIE 395 (413)
Q Consensus 338 ~l~~~~~----dg~i~v~d~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~dg~i~vw~~~ 395 (413)
.|+..+. ++.|.+||+.++ +....+..+...+.++.++ ++.++ +...|+..++|.+.
T Consensus 329 ~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~ 392 (741)
T 1yr2_A 329 QLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFD 392 (741)
T ss_dssp EEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEE
T ss_pred EEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence 8877654 456999999875 3334444555567788888 44544 57888887777665
No 213
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.49 E-value=1.8e-11 Score=108.29 Aligned_cols=218 Identities=12% Similarity=0.107 Sum_probs=151.5
Q ss_pred CCCCEEEEeecCCCeEEEEEcCCC----cEEEEee------c-CCCeEEEEEECCCCCEEEEccCC------CcEEEEEe
Q 040361 143 PSENFLITCGNWENSFQVIALNDG----RVVQSIR------Q-HRDVVSCVAVTTDGSILATGSYD------TTVMVWEV 205 (413)
Q Consensus 143 ~~~~~l~~~g~~d~~i~i~~~~~~----~~~~~~~------~-h~~~v~~~~~~~~~~~l~s~s~d------g~i~iw~~ 205 (413)
.++++|++.|..++.|+++|+.+. +..++++ . -...-..+...|+| .++++..+ |.|.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 789999999999999999999755 6677773 1 11245667888999 77776555 78999998
Q ss_pred ccccccccccccceeecCCCceeeecCceeeeec--CC-CCeEEEEEecCCCEEEEee-------------------CCC
Q 040361 206 IRARAPEKRVRNMQIEAPRKDYVIVETPFHILCG--HD-DIITCLYVSVELDIVISGS-------------------KDG 263 (413)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~-~~i~~~~~~~~~~~l~s~~-------------------~dg 263 (413)
.+.+ .+..+.. .. .--..+.|+|+++.+++.. .+.
T Consensus 172 ~T~~-----------------------v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d 228 (462)
T 2ece_A 172 YSFE-----------------------PLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGN 228 (462)
T ss_dssp TTCC-----------------------EEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCC
T ss_pred CCCe-----------------------EEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCC
Confidence 8776 3333331 11 1234578899999888874 368
Q ss_pred cEEEEEccCCeEEEEEeCC-CCCceeeEEE--ccCCcEEEEEC------CCCeEEEEEeCCceeee-----ee-------
Q 040361 264 TCVFHTLREGRYVRSLCHP-SGSALSKLAA--SRHGRIVLYGD------DDLSLHLFSINGKHLAS-----SE------- 322 (413)
Q Consensus 264 ~i~vwd~~~~~~~~~~~~~-~~~~v~~~~~--~~~~~~l~~~~------~d~~i~i~d~~~~~~~~-----~~------- 322 (413)
+|.+||+.+++.+.++... .+.....+.| +|+++++++++ .+++|.+|..++..... ..
T Consensus 229 ~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~ 308 (462)
T 2ece_A 229 RIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGN 308 (462)
T ss_dssp EEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSS
T ss_pred EEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccc
Confidence 9999999999888888764 2234555655 99999888776 45678776654221110 00
Q ss_pred ----------cCCceeEEEecCCCCEEEEeCC-CCeEEEEECCC---CceEEEecCCC--------------CcEEEEEE
Q 040361 323 ----------SNGRLNCLELSACGQFLVCGGD-QGQIVVRSMNS---LEVVRRYSGVG--------------KIITSLAV 374 (413)
Q Consensus 323 ----------~~~~i~~~~~s~~~~~l~~~~~-dg~i~v~d~~~---~~~~~~~~~~~--------------~~v~~~~~ 374 (413)
.......+.+|+||++|.++.. .+.|.+||+.+ .+++..+.... +....+.+
T Consensus 309 lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~l 388 (462)
T 2ece_A 309 LPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEI 388 (462)
T ss_dssp CCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEE
T ss_pred ccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEE
Confidence 0245788999999999888764 67999999863 35555554221 13688999
Q ss_pred ccCCeEE-EEc
Q 040361 375 TPEECFL-AGT 384 (413)
Q Consensus 375 ~~~~~~l-~~~ 384 (413)
+|||++| ++.
T Consensus 389 SpDGk~LyVaN 399 (462)
T 2ece_A 389 SRDGRRVYVTN 399 (462)
T ss_dssp CTTSSEEEEEC
T ss_pred cCCCCEEEEEc
Confidence 9998655 455
No 214
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.46 E-value=2.5e-11 Score=105.74 Aligned_cols=198 Identities=9% Similarity=0.098 Sum_probs=137.1
Q ss_pred CCeEEEEEECCCCCEEEE-------ccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeee-----cCCCC
Q 040361 176 RDVVSCVAVTTDGSILAT-------GSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILC-----GHDDI 243 (413)
Q Consensus 176 ~~~v~~~~~~~~~~~l~s-------~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~h~~~ 243 (413)
-....+++|+++++.+++ +..++.|..||..+++. ..+. ++...
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~------------------------~~~~~~~~~~~~~~ 72 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKK------------------------TVICKPEVNGYGGI 72 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCE------------------------EEEECCEETTEECC
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcE------------------------EEEEecccCCCCCC
Confidence 345678999999988888 67889999999766651 1111 24456
Q ss_pred eEEEEEecC-CCEEEEeeCCCcEEEEEccCCeEEEE-EeCC---CCCceeeEEEccCCcEEEEECCC-------------
Q 040361 244 ITCLYVSVE-LDIVISGSKDGTCVFHTLREGRYVRS-LCHP---SGSALSKLAASRHGRIVLYGDDD------------- 305 (413)
Q Consensus 244 i~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~---~~~~v~~~~~~~~~~~l~~~~~d------------- 305 (413)
+.+++++++ ++++++.. ...|.+||.. ++.... .... ....+..++++++++++++...+
T Consensus 73 ~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~ 150 (314)
T 1pjx_A 73 PAGCQCDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQE 150 (314)
T ss_dssp EEEEEECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSS
T ss_pred CceEEEecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccC
Confidence 889999999 66555544 4478999987 665433 2211 12347899999999988877655
Q ss_pred --CeEEEEEeCCceeeeeecCCceeEEEec----CCCCEEEE-eCCCCeEEEEECC-CCc-----eEEEecCCC-CcEEE
Q 040361 306 --LSLHLFSINGKHLASSESNGRLNCLELS----ACGQFLVC-GGDQGQIVVRSMN-SLE-----VVRRYSGVG-KIITS 371 (413)
Q Consensus 306 --~~i~i~d~~~~~~~~~~~~~~i~~~~~s----~~~~~l~~-~~~dg~i~v~d~~-~~~-----~~~~~~~~~-~~v~~ 371 (413)
+.|..||..+..............++++ |+++.+++ ...++.|.+||.. +++ ....+..+. ..+..
T Consensus 151 ~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~ 230 (314)
T 1pjx_A 151 KFGSIYCFTTDGQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADG 230 (314)
T ss_dssp SCEEEEEECTTSCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEE
T ss_pred CCCeEEEECCCCCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCc
Confidence 5777887764443333333456889999 99976554 4568899999976 443 223344444 66889
Q ss_pred EEEccCCeEEE-EcCCCeEEEEEecCCcc
Q 040361 372 LAVTPEECFLA-GTKDGCLLVYSIENRRT 399 (413)
Q Consensus 372 ~~~~~~~~~l~-~~~dg~i~vw~~~~~~~ 399 (413)
++++++|.+.+ ...++.|.+|+.++++.
T Consensus 231 i~~d~~G~l~v~~~~~~~i~~~d~~~g~~ 259 (314)
T 1pjx_A 231 MDFDEDNNLLVANWGSSHIEVFGPDGGQP 259 (314)
T ss_dssp EEEBTTCCEEEEEETTTEEEEECTTCBSC
T ss_pred eEECCCCCEEEEEcCCCEEEEEcCCCCcE
Confidence 99999987765 45678999999875543
No 215
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.45 E-value=1.6e-10 Score=99.88 Aligned_cols=200 Identities=9% Similarity=-0.002 Sum_probs=136.2
Q ss_pred cCCCeEEEEEECCC-CCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecC
Q 040361 174 QHRDVVSCVAVTTD-GSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVE 252 (413)
Q Consensus 174 ~h~~~v~~~~~~~~-~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~ 252 (413)
.+..-..+..|+++ +..+++...++.|..||..++. ...+ .....+.+++++++
T Consensus 10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~------------------------~~~~-~~~~~~~~i~~~~d 64 (297)
T 3g4e_A 10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQ------------------------VQRV-TMDAPVSSVALRQS 64 (297)
T ss_dssp CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCC------------------------EEEE-ECSSCEEEEEEBTT
T ss_pred cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCc------------------------EEEE-eCCCceEEEEECCC
Confidence 34445568889985 5566676778999999987765 1222 34567899999999
Q ss_pred CCEEEEeeCCCcEEEEEccCCeEEEEEeCC---CCCceeeEEEccCCcEEEEECC-----------CCeEEEEEeCCcee
Q 040361 253 LDIVISGSKDGTCVFHTLREGRYVRSLCHP---SGSALSKLAASRHGRIVLYGDD-----------DLSLHLFSINGKHL 318 (413)
Q Consensus 253 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~-----------d~~i~i~d~~~~~~ 318 (413)
++++++ . +..|.+||..+++........ ....++.++++|+|+++++... .+.|+.++..+...
T Consensus 65 G~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~ 142 (297)
T 3g4e_A 65 GGYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVK 142 (297)
T ss_dssp SSEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEE
T ss_pred CCEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEE
Confidence 995554 3 567999999888754433321 1235788999999997765422 23455555555443
Q ss_pred eeeecCCceeEEEecCCCCEEE-EeCCCCeEEEEEC--CCCce-----EEEecCCCCcEEEEEEccCCeEEE-EcCCCeE
Q 040361 319 ASSESNGRLNCLELSACGQFLV-CGGDQGQIVVRSM--NSLEV-----VRRYSGVGKIITSLAVTPEECFLA-GTKDGCL 389 (413)
Q Consensus 319 ~~~~~~~~i~~~~~s~~~~~l~-~~~~dg~i~v~d~--~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~-~~~dg~i 389 (413)
.........+.++|+|+++.|+ +.+.++.|.+||+ .++.. ...+..+...+..++++++|++.+ ...++.|
T Consensus 143 ~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v 222 (297)
T 3g4e_A 143 KYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRV 222 (297)
T ss_dssp EEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEE
T ss_pred EEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEE
Confidence 3333445578999999998664 5566789999987 45543 223333446788999999987665 5567789
Q ss_pred EEEEecCCccc
Q 040361 390 LVYSIENRRTS 400 (413)
Q Consensus 390 ~vw~~~~~~~~ 400 (413)
..|+.++++..
T Consensus 223 ~~~d~~tG~~~ 233 (297)
T 3g4e_A 223 IRLDPVTGKRL 233 (297)
T ss_dssp EEECTTTCCEE
T ss_pred EEEcCCCceEE
Confidence 99999877644
No 216
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.44 E-value=1.5e-11 Score=108.31 Aligned_cols=226 Identities=8% Similarity=-0.079 Sum_probs=146.0
Q ss_pred CEEEEeecCCC----eEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEcc----------CCCcEEEEEecccccc
Q 040361 146 NFLITCGNWEN----SFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGS----------YDTTVMVWEVIRARAP 211 (413)
Q Consensus 146 ~~l~~~g~~d~----~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s----------~dg~i~iw~~~~~~~~ 211 (413)
..+.++...++ .|.++|..+++.+..+..-..+ .+.++||+++++++. .++.|.+||..+.+
T Consensus 32 ~~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~-- 107 (368)
T 1mda_H 32 RRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL-- 107 (368)
T ss_dssp TEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC--
T ss_pred CeEEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCC--
Confidence 33444444344 8899999999999999765555 799999999998886 47889999999887
Q ss_pred ccccccceeecCCCceeeecCceeeeecC-------CCCeEEEEEecCCCEEEEeeC--CCcEEE--EEccCCeEEEEEe
Q 040361 212 EKRVRNMQIEAPRKDYVIVETPFHILCGH-------DDIITCLYVSVELDIVISGSK--DGTCVF--HTLREGRYVRSLC 280 (413)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-------~~~i~~~~~~~~~~~l~s~~~--dg~i~v--wd~~~~~~~~~~~ 280 (413)
.+..+.-. ......++++||+++++.+.. +..+.+ +|+.+ +..+.
T Consensus 108 ---------------------vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~ 163 (368)
T 1mda_H 108 ---------------------PIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTK 163 (368)
T ss_dssp ---------------------EEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEE
T ss_pred ---------------------EEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEE
Confidence 34444322 123456888999988887764 356777 88765 23332
Q ss_pred CCCC-----------------CceeeEE--------------------------EccCCcEEEEECCCCeEEEEEeCCce
Q 040361 281 HPSG-----------------SALSKLA--------------------------ASRHGRIVLYGDDDLSLHLFSINGKH 317 (413)
Q Consensus 281 ~~~~-----------------~~v~~~~--------------------------~~~~~~~l~~~~~d~~i~i~d~~~~~ 317 (413)
.+.. ..+..+. ..+++..++..+. +.+.+.|+.+..
T Consensus 164 v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~ 242 (368)
T 1mda_H 164 SASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAG 242 (368)
T ss_dssp CSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSC
T ss_pred CCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCc
Confidence 1100 0000000 0223333333333 667777775321
Q ss_pred --e-eeee-----------cCCceeEEEecCCCCEEEEeCC---------CCeEEEEECCCCceEEEecCCCCcEEEEEE
Q 040361 318 --L-ASSE-----------SNGRLNCLELSACGQFLVCGGD---------QGQIVVRSMNSLEVVRRYSGVGKIITSLAV 374 (413)
Q Consensus 318 --~-~~~~-----------~~~~i~~~~~s~~~~~l~~~~~---------dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~ 374 (413)
+ .... .......++++|+++.++++.. ++.+.++|+.+++.+.++.... ....++|
T Consensus 243 ~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~ 321 (368)
T 1mda_H 243 ATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIA 321 (368)
T ss_dssp CEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEE
T ss_pred ceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEE
Confidence 1 1110 0111223789999998887643 2356699999999998887443 6889999
Q ss_pred ccCCe--EEEEc-CCCeEEEEEecCCcccc
Q 040361 375 TPEEC--FLAGT-KDGCLLVYSIENRRTSL 401 (413)
Q Consensus 375 ~~~~~--~l~~~-~dg~i~vw~~~~~~~~~ 401 (413)
+|||+ +++.. .++.|.++|+.+++...
T Consensus 322 s~Dg~~l~va~~~~~~~VsVID~~t~kvv~ 351 (368)
T 1mda_H 322 AQDGASDNYANSAGTEVLDIYDAASDQDQS 351 (368)
T ss_dssp CCSSSCEEEEEETTTTEEEEEESSSCEEEE
T ss_pred CCCCCEEEEEccCCCCeEEEEECCCCcEEE
Confidence 99975 34566 59999999999987553
No 217
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.44 E-value=2.2e-11 Score=118.06 Aligned_cols=239 Identities=8% Similarity=0.011 Sum_probs=151.6
Q ss_pred eeEEEEecCCCCEEEEeecCC----CeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCc-----------
Q 040361 135 QCFTTMQTPSENFLITCGNWE----NSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTT----------- 199 (413)
Q Consensus 135 ~~~~~~~~~~~~~l~~~g~~d----~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~----------- 199 (413)
.+..+.++|+|++++.+.+.. ..|++||+.+++.+.... +......++|+ |++.|+.++.+..
T Consensus 130 ~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~ 207 (693)
T 3iuj_A 130 ALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQ 207 (693)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTEEEEEESSCCC-------CCC
T ss_pred EEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCCEEEEEEecCcccccccccCCC
Confidence 455678999999998765433 479999999998754311 11113568899 9999998887743
Q ss_pred --EEEEEeccccccccccccceeecCCCceeeecCceeeeec-CCCCeEEEEEecCCCEEEEeeC----CCcEEEEEccC
Q 040361 200 --VMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCG-HDDIITCLYVSVELDIVISGSK----DGTCVFHTLRE 272 (413)
Q Consensus 200 --i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~i~~~~~~~~~~~l~s~~~----dg~i~vwd~~~ 272 (413)
|++|++.+...... .+..... |...+..+.|+||+++++.... +..|+++|+.+
T Consensus 208 ~~v~~~~lgt~~~~~~-------------------~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~ 268 (693)
T 3iuj_A 208 HKVYFHRLGTAQEDDR-------------------LVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQ 268 (693)
T ss_dssp CEEEEEETTSCGGGCE-------------------EEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTS
T ss_pred cEEEEEECCCCcccce-------------------EEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCC
Confidence 88888876542100 1222223 4455788999999998754332 35899999977
Q ss_pred Ce-EEEEEeCCCCCceeeEEEccCCcEEE-EECCC---CeEEEEEeCCcee----eeeecCCceeEEEecCCCCEEEEeC
Q 040361 273 GR-YVRSLCHPSGSALSKLAASRHGRIVL-YGDDD---LSLHLFSINGKHL----ASSESNGRLNCLELSACGQFLVCGG 343 (413)
Q Consensus 273 ~~-~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d---~~i~i~d~~~~~~----~~~~~~~~i~~~~~s~~~~~l~~~~ 343 (413)
+. ....+..+.. ..... +++++..|+ ....+ +.|..+|+.+... ....+...+. .|++++++|+...
T Consensus 269 ~~~~~~~l~~~~~-~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~ 344 (693)
T 3iuj_A 269 ENAPLLTVQGDLD-ADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEY 344 (693)
T ss_dssp TTCCCEEEECSSS-SCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEE
T ss_pred CCCceEEEeCCCC-ceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEE
Confidence 63 3344444322 33333 566555544 44443 6799999874321 2233444443 8899999887765
Q ss_pred CCC---eEEEEECCCCceEEEec-CCCCcEEEEEEccCCe-EEEEc----CCCeEEEEEecCCcc
Q 040361 344 DQG---QIVVRSMNSLEVVRRYS-GVGKIITSLAVTPEEC-FLAGT----KDGCLLVYSIENRRT 399 (413)
Q Consensus 344 ~dg---~i~v~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~l~~~----~dg~i~vw~~~~~~~ 399 (413)
.++ .|++||+..+ ....+. .....+..+.+++++. ++... .-+.|+.||+.+++.
T Consensus 345 ~~~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 345 MVDATARVEQFDYEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp EETTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred EECCeeEEEEEECCCC-eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 443 6889998754 444454 2345677888888854 33322 237899999877653
No 218
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.42 E-value=1.8e-10 Score=103.93 Aligned_cols=195 Identities=13% Similarity=0.105 Sum_probs=136.2
Q ss_pred CeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEE
Q 040361 177 DVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIV 256 (413)
Q Consensus 177 ~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l 256 (413)
.....++|+++++++++...++.|+.||..++. +..+........ ++|+++++.|
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~------------------------~~~~~~~~~~~~-ia~~~~g~~l 185 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNK------------------------VTTVHPGFKGGK-PAVTKDKQRV 185 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTE------------------------EEEEEETCCBCB-CEECTTSSEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCE------------------------EEEeeccCCCCc-eeEecCCCcE
Confidence 467899999999988888888999999997765 222222233334 8999999988
Q ss_pred EEeeCCC--cEEEEEccCCeEEEEE---eCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCceeeee------ecCC
Q 040361 257 ISGSKDG--TCVFHTLREGRYVRSL---CHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKHLASS------ESNG 325 (413)
Q Consensus 257 ~s~~~dg--~i~vwd~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~------~~~~ 325 (413)
++++.++ .|.+++...+.....+ .......+.+++++|++..|+++..++.|+.||..+...... ....
T Consensus 186 ~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~ 265 (409)
T 3hrp_A 186 YSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLG 265 (409)
T ss_dssp EEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCC
T ss_pred EEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCC
Confidence 8888766 7899998766544333 121235678899999555555577788999999985443332 1111
Q ss_pred c-ee-EEEecCC-CCEEEEeCCCCeEEEEECCCCceEEEecCCC---------------CcEEEEEEccCCeEE-EEc-C
Q 040361 326 R-LN-CLELSAC-GQFLVCGGDQGQIVVRSMNSLEVVRRYSGVG---------------KIITSLAVTPEECFL-AGT-K 385 (413)
Q Consensus 326 ~-i~-~~~~s~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~---------------~~v~~~~~~~~~~~l-~~~-~ 385 (413)
. .. .++|+|+ +.++++...++.|+.|+.... +..+.++. .....++++++|.++ +-. .
T Consensus 266 ~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~ 343 (409)
T 3hrp_A 266 TNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFK 343 (409)
T ss_dssp CSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTT
T ss_pred CCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCC
Confidence 1 13 9999995 666666677889999987643 33333221 348899999998655 566 7
Q ss_pred CCeEEEEEecCCc
Q 040361 386 DGCLLVYSIENRR 398 (413)
Q Consensus 386 dg~i~vw~~~~~~ 398 (413)
+++|+.|++.+++
T Consensus 344 ~~~I~~~~~~~G~ 356 (409)
T 3hrp_A 344 GYCLRKLDILDGY 356 (409)
T ss_dssp TCEEEEEETTTTE
T ss_pred CCEEEEEECCCCE
Confidence 8999999976654
No 219
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.40 E-value=9.5e-11 Score=103.49 Aligned_cols=232 Identities=9% Similarity=0.070 Sum_probs=150.5
Q ss_pred ceeEEEEecCCCCEEEEeecC-CCeEEEEEcCCCcEEEEe-------ecCCCeEEEEEECCCCCEEEEccC-----CCcE
Q 040361 134 SQCFTTMQTPSENFLITCGNW-ENSFQVIALNDGRVVQSI-------RQHRDVVSCVAVTTDGSILATGSY-----DTTV 200 (413)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~g~~-d~~i~i~~~~~~~~~~~~-------~~h~~~v~~~~~~~~~~~l~s~s~-----dg~i 200 (413)
.....++++++|+.+++...+ ++.++||.+.+++.. .+ ..|...+..++++++++++++-.. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 456778888999877764322 343555555455533 22 135578999999999876665433 5789
Q ss_pred EEEEeccccccccccccceeecCCCceeeecCceeeee------cCCCCeEEEEEecCCCE-EEEee---CCCcEEEEEc
Q 040361 201 MVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILC------GHDDIITCLYVSVELDI-VISGS---KDGTCVFHTL 270 (413)
Q Consensus 201 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~h~~~i~~~~~~~~~~~-l~s~~---~dg~i~vwd~ 270 (413)
.+||+.+++ .+..+. .+...+..+++++++.. +++-. .++.|.+||+
T Consensus 96 ~~~d~~tg~-----------------------~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~ 152 (343)
T 2qe8_A 96 VAWDTLNNQ-----------------------LSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDL 152 (343)
T ss_dssp EEEETTTTE-----------------------EEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEET
T ss_pred EEEECCCCe-----------------------EEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEEC
Confidence 999988765 122221 12345688999986544 45544 5789999999
Q ss_pred cCCeEEEEEeCCC----------------------------CCceeeEEEccCCcEEEEECCCC-eEEEEEeC---C-c-
Q 040361 271 REGRYVRSLCHPS----------------------------GSALSKLAASRHGRIVLYGDDDL-SLHLFSIN---G-K- 316 (413)
Q Consensus 271 ~~~~~~~~~~~~~----------------------------~~~v~~~~~~~~~~~l~~~~~d~-~i~i~d~~---~-~- 316 (413)
.+++..+.+..+. ...+..++++|+++.|+++...+ .++.++.. . .
T Consensus 153 ~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~ 232 (343)
T 2qe8_A 153 QTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQL 232 (343)
T ss_dssp TTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTC
T ss_pred CCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCC
Confidence 8887766553210 02357899999998888776554 56555542 1 0
Q ss_pred -------eeeeeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecC-CCCcEEEEEEccCCeEE-EEcCCC
Q 040361 317 -------HLASSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSG-VGKIITSLAVTPEECFL-AGTKDG 387 (413)
Q Consensus 317 -------~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l-~~~~dg 387 (413)
.+......+....++++++|.++++...++.|.+||..+++....... +...+.+++|.++++++ +.+..+
T Consensus 233 ~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~ 312 (343)
T 2qe8_A 233 TDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLH 312 (343)
T ss_dssp CHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGG
T ss_pred ChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccc
Confidence 011122334567899999999999999999999999856654333322 24568999999998655 444434
Q ss_pred eE
Q 040361 388 CL 389 (413)
Q Consensus 388 ~i 389 (413)
.+
T Consensus 313 ~~ 314 (343)
T 2qe8_A 313 HS 314 (343)
T ss_dssp GS
T ss_pred cc
Confidence 33
No 220
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.39 E-value=9.9e-14 Score=123.72 Aligned_cols=202 Identities=11% Similarity=0.081 Sum_probs=111.3
Q ss_pred CCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecC
Q 040361 144 SENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAP 223 (413)
Q Consensus 144 ~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 223 (413)
++..+++ ++.|+.|+.||..+|+.+..+.. +.+.+..+..++..+++++.||.|+.||..+++..+
T Consensus 8 ~~~~v~~-gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w----------- 73 (369)
T 2hz6_A 8 PETLLFV-STLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLT----------- 73 (369)
T ss_dssp CTTEEEE-EETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSE-----------
T ss_pred eCCEEEE-EcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceee-----------
Confidence 4555555 55599999999999999988876 455555556678788888999999999998876321
Q ss_pred CCceeeecCceeeeecCCC-CeE-EEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEE
Q 040361 224 RKDYVIVETPFHILCGHDD-IIT-CLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLY 301 (413)
Q Consensus 224 ~~~~~~~~~~~~~~~~h~~-~i~-~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 301 (413)
.+..+.. .+. +..+. .+..+++++.|+.++.||..+|+.+..+..+. ...++|++..+++
T Consensus 74 ------------~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~-----~~~~~p~~~~v~~ 135 (369)
T 2hz6_A 74 ------------KLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF-----ADSLSPSTSLLYL 135 (369)
T ss_dssp ------------ECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC---------------------------EEE
T ss_pred ------------eeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC-----cccccccCCEEEE
Confidence 1111100 000 00111 24467788889999999999999988776542 1345568888999
Q ss_pred ECCCCeEEEEEeC-CceeeeeecCCceeEEEecCCC---CEEEEeCCCCeEEEEECCCCceEEEecCCCCcEE-EEEEcc
Q 040361 302 GDDDLSLHLFSIN-GKHLASSESNGRLNCLELSACG---QFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIIT-SLAVTP 376 (413)
Q Consensus 302 ~~~d~~i~i~d~~-~~~~~~~~~~~~i~~~~~s~~~---~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~-~~~~~~ 376 (413)
++.++.|+.||.+ ++.+...... .....+++.+. ..+++++.+|.|+.||..+++.+.++.. ..++. ...+++
T Consensus 136 ~~~dg~v~a~d~~tG~~~W~~~~~-~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~-~~pv~~~~~~~~ 213 (369)
T 2hz6_A 136 GRTEYTITMYDTKTRELRWNATYF-DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY-ASPVVAFYVWQR 213 (369)
T ss_dssp EEEEEEEECCCSSSSSCCCEEEEE-EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC-SSCEEEEEECTT
T ss_pred EecCCEEEEEECCCCCEEEeEecc-cccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC-CCceEEEEEecC
Confidence 9999999999997 4443332211 11223344432 5577788899999999999999887763 34443 344555
Q ss_pred CCe
Q 040361 377 EEC 379 (413)
Q Consensus 377 ~~~ 379 (413)
++.
T Consensus 214 dg~ 216 (369)
T 2hz6_A 214 EGL 216 (369)
T ss_dssp SSC
T ss_pred Cce
Confidence 664
No 221
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.39 E-value=1.7e-10 Score=111.12 Aligned_cols=205 Identities=8% Similarity=0.069 Sum_probs=139.1
Q ss_pred CCeEEEEEcCCCcEEEEeecCC-------------------------------CeEEEEEECCCCCEEEEccCCCc----
Q 040361 155 ENSFQVIALNDGRVVQSIRQHR-------------------------------DVVSCVAVTTDGSILATGSYDTT---- 199 (413)
Q Consensus 155 d~~i~i~~~~~~~~~~~~~~h~-------------------------------~~v~~~~~~~~~~~l~s~s~dg~---- 199 (413)
++.|+.||..+|+.+..+..-. ..-..++++|+...++.++.++.
T Consensus 182 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~ 261 (689)
T 1yiq_A 182 RGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDP 261 (689)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred CCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCcccc
Confidence 6899999999999988775210 01125778888889998887764
Q ss_pred ---------------EEEEEeccccccccccccceeecCCCceeeecCceeeeec--CC-------CCeEEEEEecCCC-
Q 040361 200 ---------------VMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCG--HD-------DIITCLYVSVELD- 254 (413)
Q Consensus 200 ---------------i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~-------~~i~~~~~~~~~~- 254 (413)
|..||.++++.. -.++. |. ..........+++
T Consensus 262 ~~~~~~~gd~~y~~~v~AlD~~TG~~~-----------------------W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~ 318 (689)
T 1yiq_A 262 KWRSQAKGDNLFLSSIVAVNADTGEYV-----------------------WHYQTTPGDAWDYTATQHMILAELPIDGKP 318 (689)
T ss_dssp HHHHTTCSCCTTTTEEEEEETTTCCEE-----------------------EEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred CCCCCCCCCceeeeeEEEEEccCCcee-----------------------EeeecCCcccccccCCCCcEEEeeccCCcE
Confidence 899999888732 22221 11 1222222333554
Q ss_pred --EEEEeeCCCcEEEEEccCCeEEEEEeCCCC--------------------------------------CceeeEEEcc
Q 040361 255 --IVISGSKDGTCVFHTLREGRYVRSLCHPSG--------------------------------------SALSKLAASR 294 (413)
Q Consensus 255 --~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~--------------------------------------~~v~~~~~~~ 294 (413)
.++.++.+|.++++|.++|+.+........ .....++++|
T Consensus 319 ~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp 398 (689)
T 1yiq_A 319 RKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNP 398 (689)
T ss_dssp EEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEET
T ss_pred EEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECC
Confidence 788999999999999999998855432110 0112368888
Q ss_pred CCcEEEEECC---------------------------------------------CCeEEEEEeC-CceeeeeecCCcee
Q 040361 295 HGRIVLYGDD---------------------------------------------DLSLHLFSIN-GKHLASSESNGRLN 328 (413)
Q Consensus 295 ~~~~l~~~~~---------------------------------------------d~~i~i~d~~-~~~~~~~~~~~~i~ 328 (413)
+..++++... +|.|+.||+. ++.+.......+..
T Consensus 399 ~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~ 478 (689)
T 1yiq_A 399 DTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFN 478 (689)
T ss_dssp TTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCC
T ss_pred CCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCcc
Confidence 8777776521 3779999998 55555555445454
Q ss_pred EEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCc-EEEEEEccCCe-EEE
Q 040361 329 CLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKI-ITSLAVTPEEC-FLA 382 (413)
Q Consensus 329 ~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~-~l~ 382 (413)
.-.+...+.++++|+.||.++.||.++++.+.+++...+. -.-+.|..+|+ |++
T Consensus 479 ~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 479 GGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVT 534 (689)
T ss_dssp CCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEE
Confidence 4566678889999999999999999999999888744322 23466777875 443
No 222
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.36 E-value=3.2e-10 Score=101.53 Aligned_cols=267 Identities=10% Similarity=0.079 Sum_probs=161.8
Q ss_pred CcEEEEecCceEEEEEee-----ccCCCCCCceeeecC----------CCCccccCCCcCCCcccCCCCc--ccceecce
Q 040361 73 SSIVLVNQGLTLSVKMWL-----TTQLQSGGNFTFSGS----------QDPFFGVGADILSPRNVGSPLA--ESFELGSQ 135 (413)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~-----~~~~s~~~~~l~~~~----------~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 135 (413)
+.+.+++......+..+. -..+||||++++.+. .++.+.+.+.......-...+. ........
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~~Pgia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~ 178 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGFLPHPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTY 178 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCC
T ss_pred CeEEEEECCCCEEEEEEECCCCCceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCC
Confidence 456666654443333222 235799999998876 3566777542211100000000 00001123
Q ss_pred eEEEEecCCCCEEEEeecC-CCeEEEEEcCCCcEEEEeecCCCeEEEEEECCC-CCEEEEccCCCcEEEEEecccccccc
Q 040361 136 CFTTMQTPSENFLITCGNW-ENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTD-GSILATGSYDTTVMVWEVIRARAPEK 213 (413)
Q Consensus 136 ~~~~~~~~~~~~l~~~g~~-d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~dg~i~iw~~~~~~~~~~ 213 (413)
...+.++|+|++++++... ++.|.++|+.+++.+..+..-. . ....|+ .+.+++.+.||.+.+.+..+++....
T Consensus 179 P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g-~---~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~ 254 (426)
T 3c75_H 179 QWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD-C---YHIFPASPTVFYMNCRDGSLARVDFADGETKVT 254 (426)
T ss_dssp GGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS-E---EEEEEEETTEEEEEETTSSEEEEECCTTCCEEE
T ss_pred cceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC-c---eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEE
Confidence 4457789999999987653 6899999999999998886422 1 222333 25556666778877777744331100
Q ss_pred ccccceeecCCCceeeecCceeeeecCCCCe-EEEEEecCCCEEEEeeCCCcEEEEEccCCeEE--EEEeCC--C-----
Q 040361 214 RVRNMQIEAPRKDYVIVETPFHILCGHDDII-TCLYVSVELDIVISGSKDGTCVFHTLREGRYV--RSLCHP--S----- 283 (413)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i-~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~--~~~~~~--~----- 283 (413)
. . ..+.....++ ..+.+.+++..++..+..+.+.+.|+...... ..+... .
T Consensus 255 -~-----------------~-~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g 315 (426)
T 3c75_H 255 -N-----------------T-EVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADD 315 (426)
T ss_dssp -E-----------------C-CCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGT
T ss_pred -e-----------------e-eeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccc
Confidence 0 0 0011111111 13467888887776677899999998655422 111110 0
Q ss_pred --CCceeeEEEccCCcEEEEECC----------CCeEEEEEeCC-ceeeeeecCCceeEEEecCCCC-EEEEeC-CCCeE
Q 040361 284 --GSALSKLAASRHGRIVLYGDD----------DLSLHLFSING-KHLASSESNGRLNCLELSACGQ-FLVCGG-DQGQI 348 (413)
Q Consensus 284 --~~~v~~~~~~~~~~~l~~~~~----------d~~i~i~d~~~-~~~~~~~~~~~i~~~~~s~~~~-~l~~~~-~dg~i 348 (413)
......++++++++.+++... .+.|.++|+.. +.+...........++|+|||+ ++++.. .++.|
T Consensus 316 ~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~V 395 (426)
T 3c75_H 316 WRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQTL 395 (426)
T ss_dssp EEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEE
T ss_pred cccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeE
Confidence 012234789999887777542 35799999984 4444555555689999999999 888877 58999
Q ss_pred EEEECCCCceEEEe
Q 040361 349 VVRSMNSLEVVRRY 362 (413)
Q Consensus 349 ~v~d~~~~~~~~~~ 362 (413)
.++|+.+++.+.++
T Consensus 396 sVID~~t~kvv~tI 409 (426)
T 3c75_H 396 HIYDAATGEELRSV 409 (426)
T ss_dssp EEEETTTCCEEEEE
T ss_pred EEEECCCCCEEEEe
Confidence 99999999999887
No 223
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.34 E-value=7.2e-10 Score=96.12 Aligned_cols=185 Identities=13% Similarity=0.124 Sum_probs=121.9
Q ss_pred ceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecC----CCeEEEEEECCCCCEEEE----ccC---------
Q 040361 134 SQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQH----RDVVSCVAVTTDGSILAT----GSY--------- 196 (413)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~l~s----~s~--------- 196 (413)
..+..+.+.++|+.++ +...++.|.+|+.+ ++........ ...+..++++++|+..+| |..
T Consensus 86 ~~~~gl~~d~dG~l~v-~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~ 163 (305)
T 3dr2_A 86 AFTNGNAVDAQQRLVH-CEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPAD 163 (305)
T ss_dssp SCEEEEEECTTSCEEE-EETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCC
T ss_pred CccceeeECCCCCEEE-EECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccc
Confidence 4466778889888544 44446789999985 6543322211 234678999999998886 442
Q ss_pred ----CCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCC------CcEE
Q 040361 197 ----DTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKD------GTCV 266 (413)
Q Consensus 197 ----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~d------g~i~ 266 (413)
.+.|..||..+++ +..+. .......++|+|+++.|+.+... +.|.
T Consensus 164 ~~~~~~~v~~~d~~~g~------------------------~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~ 218 (305)
T 3dr2_A 164 PELAHHSVYRLPPDGSP------------------------LQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEIT 218 (305)
T ss_dssp CSSSCEEEEEECSSSCC------------------------CEEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEE
T ss_pred cccCCCeEEEEcCCCCc------------------------EEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEE
Confidence 2345555554443 11122 23456789999999977776655 7899
Q ss_pred EEEccCCeEE--EEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCceeeeeecCCceeEEEecCCCCEEEEeCC
Q 040361 267 FHTLREGRYV--RSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKHLASSESNGRLNCLELSACGQFLVCGGD 344 (413)
Q Consensus 267 vwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 344 (413)
+||+..+... ..+..........++++++|++.+ +..+ .|.+|+.+++.+........+.+++|+++++.|++++.
T Consensus 219 ~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv-~~~~-gv~~~~~~g~~~~~~~~~~~~~~~~f~~d~~~L~it~~ 296 (305)
T 3dr2_A 219 AFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWS-SSGT-GVCVFDSDGQLLGHIPTPGTASNCTFDQAQQRLFITGG 296 (305)
T ss_dssp EEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEE-CCSS-EEEEECTTSCEEEEEECSSCCCEEEECTTSCEEEEEET
T ss_pred EEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEE-ecCC-cEEEECCCCCEEEEEECCCceeEEEEeCCCCEEEEEcC
Confidence 9998765421 122111123456799999999544 4444 59999998887776655557899999999988888776
Q ss_pred CCe
Q 040361 345 QGQ 347 (413)
Q Consensus 345 dg~ 347 (413)
++.
T Consensus 297 ~~l 299 (305)
T 3dr2_A 297 PCL 299 (305)
T ss_dssp TEE
T ss_pred CeE
Confidence 543
No 224
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.33 E-value=7.9e-10 Score=106.28 Aligned_cols=219 Identities=9% Similarity=0.070 Sum_probs=150.9
Q ss_pred CCeEEEEEcCCCcEEEEeecCCCe--------------------------------EEEEEECCCCCEEEEccCCC----
Q 040361 155 ENSFQVIALNDGRVVQSIRQHRDV--------------------------------VSCVAVTTDGSILATGSYDT---- 198 (413)
Q Consensus 155 d~~i~i~~~~~~~~~~~~~~h~~~--------------------------------v~~~~~~~~~~~l~s~s~dg---- 198 (413)
++.|+.||..+|+.+..+...... ...++++|++..++.++.++
T Consensus 189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~ 268 (677)
T 1kb0_A 189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWS 268 (677)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCcccc
Confidence 689999999999999877642211 12467888888888877664
Q ss_pred ---------------cEEEEEeccccccccccccceeecCCCceeeecCceeeeec--CC-------CCeEEEEEecCC-
Q 040361 199 ---------------TVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCG--HD-------DIITCLYVSVEL- 253 (413)
Q Consensus 199 ---------------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~-------~~i~~~~~~~~~- 253 (413)
+|..+|.++++.. -.++. |. .....+....+|
T Consensus 269 ~~~~~~~~gd~~~~~sv~AlD~~TG~~~-----------------------W~~~~~~~d~wd~~~~~~p~l~~~~~dG~ 325 (677)
T 1kb0_A 269 HKVRSPKGGDNLYLASIVALDPDTGKYK-----------------------WHYQETPGDNWDYTSTQPMILADIKIAGK 325 (677)
T ss_dssp HHHHSTTCCCCTTTTEEEEECTTTCCEE-----------------------EEEESSTTCCSCCCCCSCCEEEEEEETTE
T ss_pred CCCCCccCCCCeeeEEEEEEECCCCCEE-----------------------EEEecCCCcccccccCCCcEEEecccCCc
Confidence 4888888887722 22211 21 122223333466
Q ss_pred --CEEEEeeCCCcEEEEEccCCeEEEEEeCCCC----------Cce------------------------eeEEEccCCc
Q 040361 254 --DIVISGSKDGTCVFHTLREGRYVRSLCHPSG----------SAL------------------------SKLAASRHGR 297 (413)
Q Consensus 254 --~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~----------~~v------------------------~~~~~~~~~~ 297 (413)
..++.++.+|.++++|..+|+.+..+..... ..+ ..++++|+..
T Consensus 326 ~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~ 405 (677)
T 1kb0_A 326 PRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTG 405 (677)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTT
T ss_pred EeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCC
Confidence 6789999999999999999999887653210 001 2568889888
Q ss_pred EEEEECC-------------------------------------------CCeEEEEEeC-CceeeeeecCCceeEEEec
Q 040361 298 IVLYGDD-------------------------------------------DLSLHLFSIN-GKHLASSESNGRLNCLELS 333 (413)
Q Consensus 298 ~l~~~~~-------------------------------------------d~~i~i~d~~-~~~~~~~~~~~~i~~~~~s 333 (413)
++++... .+.|..||+. ++.+....+..++....+.
T Consensus 406 ~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~ 485 (677)
T 1kb0_A 406 LVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLT 485 (677)
T ss_dssp EEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEE
T ss_pred EEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceE
Confidence 8777532 2789999998 5555555555556666677
Q ss_pred CCCCEEEEeCCCCeEEEEECCCCceEEEecCCC-CcEEEEEEccCCe-EEE--EcC---------------CCeEEEEEe
Q 040361 334 ACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVG-KIITSLAVTPEEC-FLA--GTK---------------DGCLLVYSI 394 (413)
Q Consensus 334 ~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~-~l~--~~~---------------dg~i~vw~~ 394 (413)
..+..+++++.||.+++||..+++.+.++.... ..-.-+.|..+|+ +++ .+. .+.+..|.+
T Consensus 486 ~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l 565 (677)
T 1kb0_A 486 TAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVV 565 (677)
T ss_dssp ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEE
T ss_pred eCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEec
Confidence 788899999999999999999999999887433 2223355667875 443 221 468889988
Q ss_pred cC
Q 040361 395 EN 396 (413)
Q Consensus 395 ~~ 396 (413)
..
T Consensus 566 ~~ 567 (677)
T 1kb0_A 566 GG 567 (677)
T ss_dssp TC
T ss_pred cc
Confidence 73
No 225
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.33 E-value=1.9e-09 Score=94.30 Aligned_cols=190 Identities=10% Similarity=0.021 Sum_probs=128.4
Q ss_pred eEEEEEECCC-CCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEE
Q 040361 178 VVSCVAVTTD-GSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIV 256 (413)
Q Consensus 178 ~v~~~~~~~~-~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l 256 (413)
-..+..|+|+ +..+++...++.|..||..++. ...+ .....+.+++++++++++
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~------------------------~~~~-~~~~~v~~i~~~~dg~l~ 104 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGR------------------------KTVH-ALPFMGSALAKISDSKQL 104 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTE------------------------EEEE-ECSSCEEEEEEEETTEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCc------------------------EEEE-ECCCcceEEEEeCCCeEE
Confidence 3457789997 4556677778899999987654 1222 234678999999999877
Q ss_pred EEeeCCCcEEEEEccCCeEEEEEeCC---CCCceeeEEEccCCcEEEEECC------CCeEEEEEeCCceeeeeecCCce
Q 040361 257 ISGSKDGTCVFHTLREGRYVRSLCHP---SGSALSKLAASRHGRIVLYGDD------DLSLHLFSINGKHLASSESNGRL 327 (413)
Q Consensus 257 ~s~~~dg~i~vwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~~~~i 327 (413)
++. .+ .|.+||..+++........ ....+..++++++|+++++... .+.|+.++ .++...........
T Consensus 105 v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~~~~ 181 (326)
T 2ghs_A 105 IAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-KGKVTKLFADISIP 181 (326)
T ss_dssp EEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-TTEEEEEEEEESSE
T ss_pred EEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-CCcEEEeeCCCccc
Confidence 654 44 4999999888754333221 1235788999999997765532 35677777 44332222333456
Q ss_pred eEEEecCCCCEEEE-eCCCCeEEEEECC--CC-c-----eEEEecCCCCcEEEEEEccCCeEEE-EcCCCeEEEEEec
Q 040361 328 NCLELSACGQFLVC-GGDQGQIVVRSMN--SL-E-----VVRRYSGVGKIITSLAVTPEECFLA-GTKDGCLLVYSIE 395 (413)
Q Consensus 328 ~~~~~s~~~~~l~~-~~~dg~i~v~d~~--~~-~-----~~~~~~~~~~~v~~~~~~~~~~~l~-~~~dg~i~vw~~~ 395 (413)
..++|+|+++.++. .+.++.|.+||+. ++ + ....+......+..++++++|.+.+ ...++.|..|+.+
T Consensus 182 ~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~ 259 (326)
T 2ghs_A 182 NSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD 259 (326)
T ss_dssp EEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT
T ss_pred CCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC
Confidence 78999999987654 4567899999986 55 3 2223333445678999999987665 4456789999874
No 226
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.33 E-value=6.3e-10 Score=99.60 Aligned_cols=227 Identities=12% Similarity=0.151 Sum_probs=144.9
Q ss_pred CCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecC
Q 040361 144 SENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAP 223 (413)
Q Consensus 144 ~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 223 (413)
++..+++ ++.++.|..+|..+|+.+............... .+..++.++.++.|..+|..+++..+
T Consensus 102 ~~~~v~v-~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W----------- 167 (376)
T 3q7m_A 102 SGGHVYI-GSEKAQVYALNTSDGTVAWQTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKW----------- 167 (376)
T ss_dssp ETTEEEE-EETTSEEEEEETTTCCEEEEEECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEE-----------
T ss_pred eCCEEEE-EcCCCEEEEEECCCCCEEEEEeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEE-----------
Confidence 3455555 445899999999999998777654322111122 24478888889999999998887322
Q ss_pred CCceeeecCceeeeecCCCC-----eEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCc------eeeEEE
Q 040361 224 RKDYVIVETPFHILCGHDDI-----ITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSA------LSKLAA 292 (413)
Q Consensus 224 ~~~~~~~~~~~~~~~~h~~~-----i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~------v~~~~~ 292 (413)
........ ....... +..++.++.++.+..+|..+++.+.......... +..+..
T Consensus 168 ------------~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~ 233 (376)
T 3q7m_A 168 ------------TVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDT 233 (376)
T ss_dssp ------------EEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCC
T ss_pred ------------EEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCC
Confidence 11111100 0111122 3567788889999999999999988776432100 000111
Q ss_pred cc--CCcEEEEECCCCeEEEEEeC-CceeeeeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecC-CCCc
Q 040361 293 SR--HGRIVLYGDDDLSLHLFSIN-GKHLASSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSG-VGKI 368 (413)
Q Consensus 293 ~~--~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-~~~~ 368 (413)
.| .+..+++++.++.+..+|.+ ++.+..... .....+.. ++..+++++.++.|..+|..+++.+..... ....
T Consensus 234 ~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~-~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~ 310 (376)
T 3q7m_A 234 TPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL-GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRL 310 (376)
T ss_dssp CCEEETTEEEEECTTSCEEEEETTTCCEEEEECC-CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSC
T ss_pred CcEEECCEEEEEecCcEEEEEECCCCcEEeeccC-CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCc
Confidence 11 24667778888999999997 554444332 23344444 466788888899999999999998877652 2222
Q ss_pred EEEEEEccCCeEEEEcCCCeEEEEEecCCccccc
Q 040361 369 ITSLAVTPEECFLAGTKDGCLLVYSIENRRTSLP 402 (413)
Q Consensus 369 v~~~~~~~~~~~l~~~~dg~i~vw~~~~~~~~~~ 402 (413)
+...... ++.+++++.+|.|.++|.++++....
T Consensus 311 ~~~~~~~-~~~l~v~~~~g~l~~~d~~tG~~~~~ 343 (376)
T 3q7m_A 311 LTSPVLY-NGNLVVGDSEGYLHWINVEDGRFVAQ 343 (376)
T ss_dssp CCCCEEE-TTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred ccCCEEE-CCEEEEEeCCCeEEEEECCCCcEEEE
Confidence 3333333 57788899999999999999876543
No 227
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.31 E-value=1.6e-09 Score=96.96 Aligned_cols=224 Identities=14% Similarity=0.132 Sum_probs=138.4
Q ss_pred CCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeE-----EEEEECCCCCEEEEccCCCcEEEEEeccccccccccccce
Q 040361 145 ENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVV-----SCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQ 219 (413)
Q Consensus 145 ~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v-----~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~ 219 (413)
+..+++ +..++.|..+|..+|+.+.......... ..... .+..++.++.++.+..+|..+++..+.....
T Consensus 143 ~~~v~v-~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~-- 217 (376)
T 3q7m_A 143 DGLVLI-HTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQRIS-- 217 (376)
T ss_dssp TTEEEE-ECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE--ETTEEEECCTTTEEEEEETTTCCEEEEEECC--
T ss_pred CCEEEE-EcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE--ECCEEEEEcCCCEEEEEECCCCcEEEEEecc--
Confidence 344444 5558999999999999988776432211 11122 2457888888999999999887732211000
Q ss_pred eecCCCceeeecCceeeee-cCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcE
Q 040361 220 IEAPRKDYVIVETPFHILC-GHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRI 298 (413)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~-~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 298 (413)
.+... .....+. ....++ . .+..++.++.++.+..+|..+++.+...... ....+.. ++..
T Consensus 218 --~~~~~-----~~~~~~~~~~~~p~----~--~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~---~~~~~~~--~~~~ 279 (376)
T 3q7m_A 218 --QATGS-----TEIDRLSDVDTTPV----V--VNGVVFALAYNGNLTALDLRSGQIMWKRELG---SVNDFIV--DGNR 279 (376)
T ss_dssp --C----------------CCCCCCE----E--ETTEEEEECTTSCEEEEETTTCCEEEEECCC---CEEEEEE--ETTE
T ss_pred --cCCCC-----cccccccccCCCcE----E--ECCEEEEEecCcEEEEEECCCCcEEeeccCC---CCCCceE--ECCE
Confidence 00000 0000000 001111 1 2456777888999999999999988776542 2333333 3567
Q ss_pred EEEECCCCeEEEEEeC-Cceeeeee-c-CCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEc
Q 040361 299 VLYGDDDLSLHLFSIN-GKHLASSE-S-NGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVT 375 (413)
Q Consensus 299 l~~~~~d~~i~i~d~~-~~~~~~~~-~-~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~ 375 (413)
+++++.++.|..+|.+ ++.+.... . ...+..... .+..|++++.+|.|+++|..+++.+..+......+.+....
T Consensus 280 l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~ 357 (376)
T 3q7m_A 280 IYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVA 357 (376)
T ss_dssp EEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEE
T ss_pred EEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEE
Confidence 7778888999999987 44443332 1 122222333 35688899999999999999999988776533333322222
Q ss_pred cCCeEEEEcCCCeEEEEE
Q 040361 376 PEECFLAGTKDGCLLVYS 393 (413)
Q Consensus 376 ~~~~~l~~~~dg~i~vw~ 393 (413)
.++.+++++.+|.|+.|+
T Consensus 358 ~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 358 ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp ETTEEEEEBTTSCEEEEE
T ss_pred ECCEEEEEeCCCEEEEEe
Confidence 367888899999999986
No 228
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.31 E-value=7.5e-10 Score=106.65 Aligned_cols=257 Identities=11% Similarity=0.152 Sum_probs=154.6
Q ss_pred CCEEEEeecCCCeEEEEEcCCCcEEEEeecC--CCeEEEEEECC---CCCEEEEcc------CCCcEEEEEecccccccc
Q 040361 145 ENFLITCGNWENSFQVIALNDGRVVQSIRQH--RDVVSCVAVTT---DGSILATGS------YDTTVMVWEVIRARAPEK 213 (413)
Q Consensus 145 ~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h--~~~v~~~~~~~---~~~~l~s~s------~dg~i~iw~~~~~~~~~~ 213 (413)
+..+++ ++.|+.|..+|..+|+.+..+... ......+..+| ++ .++.++ .+|.|..||..+++..+.
T Consensus 121 ~g~v~v-~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 198 (689)
T 1yiq_A 121 KGKVYV-GVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWR 198 (689)
T ss_dssp TTEEEE-ECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred CCEEEE-EccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEE
Confidence 445544 555999999999999999777642 11111111122 44 444443 378999999999884432
Q ss_pred ccccceeecCCCc----eeeec-Cc----eeee-ecCCCCeEEEEEecCCCEEEEeeCCCc-------------------
Q 040361 214 RVRNMQIEAPRKD----YVIVE-TP----FHIL-CGHDDIITCLYVSVELDIVISGSKDGT------------------- 264 (413)
Q Consensus 214 ~~~~~~~~~~~~~----~~~~~-~~----~~~~-~~h~~~i~~~~~~~~~~~l~s~~~dg~------------------- 264 (413)
..... ..+... .+... .. .... .++......++++++...++.++.++.
T Consensus 199 ~~~~~--~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~ 276 (689)
T 1yiq_A 199 FYTVP--GDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSS 276 (689)
T ss_dssp EESSC--CCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTE
T ss_pred ecccC--CCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeee
Confidence 11000 000000 00000 00 0000 011122235788888888888887763
Q ss_pred EEEEEccCCeEEEEEeCCCC--------CceeeEEEccCCc---EEEEECCCCeEEEEEeC-CceeeeeecC--------
Q 040361 265 CVFHTLREGRYVRSLCHPSG--------SALSKLAASRHGR---IVLYGDDDLSLHLFSIN-GKHLASSESN-------- 324 (413)
Q Consensus 265 i~vwd~~~~~~~~~~~~~~~--------~~v~~~~~~~~~~---~l~~~~~d~~i~i~d~~-~~~~~~~~~~-------- 324 (413)
|..+|.++|+.+..+..... ..........+|+ .++.++.+|.++++|.+ ++.+......
T Consensus 277 v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~ 356 (689)
T 1yiq_A 277 IVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGM 356 (689)
T ss_dssp EEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEE
T ss_pred EEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecccccccccccccc
Confidence 99999999999988864211 1111112223554 78899999999999987 4444211100
Q ss_pred --------------------------------CceeEEEecCCCCEEEEeCC----------------------------
Q 040361 325 --------------------------------GRLNCLELSACGQFLVCGGD---------------------------- 344 (413)
Q Consensus 325 --------------------------------~~i~~~~~s~~~~~l~~~~~---------------------------- 344 (413)
.....++++|+..++++...
T Consensus 357 ~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 436 (689)
T 1yiq_A 357 DMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRT 436 (689)
T ss_dssp ETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEE
T ss_pred CccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccc
Confidence 01123788888887776521
Q ss_pred -----------------CCeEEEEECCCCceEEEecCCCCcEEEEEEcc-CCeEEEEcCCCeEEEEEecCCccccccccc
Q 040361 345 -----------------QGQIVVRSMNSLEVVRRYSGVGKIITSLAVTP-EECFLAGTKDGCLLVYSIENRRTSLPRNVK 406 (413)
Q Consensus 345 -----------------dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~dg~i~vw~~~~~~~~~~~~~~ 406 (413)
+|.|+.||+.+++.+.+++.+.. +..-.+.. .+.++.++.||.|+.||.++++......+.
T Consensus 437 ~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~-~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~ 515 (689)
T 1yiq_A 437 GMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTI-FNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAA 515 (689)
T ss_dssp CCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSS-CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred cccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCC-ccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCC
Confidence 37899999999999988765432 22223443 466667999999999999999877655443
No 229
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.31 E-value=2.2e-10 Score=105.00 Aligned_cols=232 Identities=8% Similarity=-0.033 Sum_probs=156.0
Q ss_pred CCCCEEEEeecCCCeEEEEEcCCCcEEEEeec-CCCeEEEEEE-C-CCCCEEEEcc------------------CCCcEE
Q 040361 143 PSENFLITCGNWENSFQVIALNDGRVVQSIRQ-HRDVVSCVAV-T-TDGSILATGS------------------YDTTVM 201 (413)
Q Consensus 143 ~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~-h~~~v~~~~~-~-~~~~~l~s~s------------------~dg~i~ 201 (413)
+||+++.++...++.|.+.|+.+.++.+.+.- .......+++ + |+++++++++ .++.+.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 47888988887788999999999998886643 2345778888 5 8999998884 245688
Q ss_pred EEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCC-------------------
Q 040361 202 VWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKD------------------- 262 (413)
Q Consensus 202 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~d------------------- 262 (413)
+.|.++.+ ...++.--. ....++++|+++++++.+.+
T Consensus 179 vID~~t~~-----------------------v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~ 234 (595)
T 1fwx_A 179 AVDADKWE-----------------------VAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIV 234 (595)
T ss_dssp EEETTTTE-----------------------EEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEE
T ss_pred EEECCCCe-----------------------EEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEE
Confidence 88887654 122221111 22345566666665555533
Q ss_pred -------------------CcEEEEEccC--CeE-EEEEeCCCCCceeeEEEccCCcEEEEEC-CCCeEEEEEeCCc---
Q 040361 263 -------------------GTCVFHTLRE--GRY-VRSLCHPSGSALSKLAASRHGRIVLYGD-DDLSLHLFSINGK--- 316 (413)
Q Consensus 263 -------------------g~i~vwd~~~--~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~--- 316 (413)
+.|.+.|.++ ++. +..+... ....++.++|||+++++++ .+.+|.++|+...
T Consensus 235 V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg--~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~ 312 (595)
T 1fwx_A 235 VFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIA--NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAV 312 (595)
T ss_dssp EEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEE--SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHH
T ss_pred EeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecC--CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccc
Confidence 2477888877 544 5555432 2567899999999877765 5789999999843
Q ss_pred ----------eeeeeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCC----------CceEEEecCCCCcE-----EE
Q 040361 317 ----------HLASSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNS----------LEVVRRYSGVGKII-----TS 371 (413)
Q Consensus 317 ----------~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~----------~~~~~~~~~~~~~v-----~~ 371 (413)
.............++|+|+|...++.--|+.|.+||+.. .+.+.++..|-.+- .+
T Consensus 313 ~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g 392 (595)
T 1fwx_A 313 FYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMG 392 (595)
T ss_dssp HHSCCCGGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTT
T ss_pred cccccCcccceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccc
Confidence 223344556789999999995455667799999999977 55677777665432 12
Q ss_pred EEEccCCeEE-E---EcCCCeE----------EEEEecCCccc
Q 040361 372 LAVTPEECFL-A---GTKDGCL----------LVYSIENRRTS 400 (413)
Q Consensus 372 ~~~~~~~~~l-~---~~~dg~i----------~vw~~~~~~~~ 400 (413)
+.++|||++| + .+.|..+ .++|+..++..
T Consensus 393 ~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~ 435 (595)
T 1fwx_A 393 ETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMV 435 (595)
T ss_dssp TSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCE
T ss_pred eEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcEE
Confidence 2457898766 3 2334431 78898765543
No 230
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.30 E-value=2.4e-10 Score=100.23 Aligned_cols=220 Identities=13% Similarity=0.113 Sum_probs=151.4
Q ss_pred CCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCC
Q 040361 145 ENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPR 224 (413)
Q Consensus 145 ~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 224 (413)
+..+.+ ++.++.|..+|.. ++.......+...+.++...+++. |+.++.++.|..+|.. ++
T Consensus 107 ~~~l~v-~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~--------------- 167 (330)
T 3hxj_A 107 EDILYV-TSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GT--------------- 167 (330)
T ss_dssp TTEEEE-ECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SC---------------
T ss_pred CCEEEE-EecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CC---------------
Confidence 444444 4458899999988 887777766666666777777776 5567778899999987 54
Q ss_pred CceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECC
Q 040361 225 KDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDD 304 (413)
Q Consensus 225 ~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 304 (413)
....+......+.++...+++.+++. + +.|..+| .+++........ ...+.++...+++.+. +++.
T Consensus 168 --------~~~~~~~~~~~~~~~~~d~~g~l~v~-t--~~l~~~d-~~g~~~~~~~~~-~~~~~~~~~~~~g~l~-v~t~ 233 (330)
T 3hxj_A 168 --------EKWRFKTNDAITSAASIGKDGTIYFG-S--DKVYAIN-PDGTEKWNFYAG-YWTVTRPAISEDGTIY-VTSL 233 (330)
T ss_dssp --------EEEEEECSSCCCSCCEECTTCCEEEE-S--SSEEEEC-TTSCEEEEECCS-SCCCSCCEECTTSCEE-EEET
T ss_pred --------EeEEEecCCCceeeeEEcCCCEEEEE-e--CEEEEEC-CCCcEEEEEccC-CcceeceEECCCCeEE-EEcC
Confidence 22333333445666777777765544 4 8899999 788777776644 3467888888887654 4555
Q ss_pred CCeEEEEEeCCceeeeeecC-CceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEccCCeEEEE
Q 040361 305 DLSLHLFSINGKHLASSESN-GRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFLAG 383 (413)
Q Consensus 305 d~~i~i~d~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 383 (413)
++.|..+|..+..+...... ..+..+.+.+++ .|.+++.+|.|..+|. +++.+..+......+.++...+++.+..+
T Consensus 234 ~~gl~~~~~~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~~g 311 (330)
T 3hxj_A 234 DGHLYAINPDGTEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIYFG 311 (330)
T ss_dssp TTEEEEECTTSCEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEEEE
T ss_pred CCeEEEECCCCCEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEEEE
Confidence 77888888777666554332 233445565555 5667778889999996 67777777655666778888888999999
Q ss_pred cCCCeEEEEEecCCcc
Q 040361 384 TKDGCLLVYSIENRRT 399 (413)
Q Consensus 384 ~~dg~i~vw~~~~~~~ 399 (413)
+.+|.+++...+..+.
T Consensus 312 t~~G~~~~~~~~~~~~ 327 (330)
T 3hxj_A 312 TRNGKFYALFNLEHHH 327 (330)
T ss_dssp CTTSCEEEEEC-----
T ss_pred cCCCeEEEEecccccc
Confidence 9999999987765443
No 231
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.30 E-value=4.1e-10 Score=108.29 Aligned_cols=255 Identities=11% Similarity=0.137 Sum_probs=158.2
Q ss_pred CCEEEEeecCCCeEEEEEcCCCcEEEEeecC-C----CeEEE-EEECCCCCEEEEccC------CCcEEEEEeccccccc
Q 040361 145 ENFLITCGNWENSFQVIALNDGRVVQSIRQH-R----DVVSC-VAVTTDGSILATGSY------DTTVMVWEVIRARAPE 212 (413)
Q Consensus 145 ~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h-~----~~v~~-~~~~~~~~~l~s~s~------dg~i~iw~~~~~~~~~ 212 (413)
+..+++ ++.|+.|..+|..+|+.+..+..+ . ..+.. ... .+..++.++. ++.|+.+|..+++..+
T Consensus 128 ~~~v~v-~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W 204 (677)
T 1kb0_A 128 KGKVYV-GAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKW 204 (677)
T ss_dssp TTEEEE-ECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred CCEEEE-EcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEE
Confidence 445555 455999999999999999888754 2 11111 111 2345555543 7999999999987433
Q ss_pred cccccceeecCCC-ceeee---------c---CceeeeecCCCCeEEEEEecCCCEEEEeeCCC----------------
Q 040361 213 KRVRNMQIEAPRK-DYVIV---------E---TPFHILCGHDDIITCLYVSVELDIVISGSKDG---------------- 263 (413)
Q Consensus 213 ~~~~~~~~~~~~~-~~~~~---------~---~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg---------------- 263 (413)
..-. ..+.. ..... . .......+.......+++++++..++.++.++
T Consensus 205 ~~~~----~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~ 280 (677)
T 1kb0_A 205 RWFS----VPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNL 280 (677)
T ss_dssp EEES----SCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCT
T ss_pred Eecc----CCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCe
Confidence 2110 00000 00000 0 00000001122234678888888888877664
Q ss_pred ---cEEEEEccCCeEEEEEeCCCC--------CceeeEEEccCC---cEEEEECCCCeEEEEEeC-CceeeeeecC----
Q 040361 264 ---TCVFHTLREGRYVRSLCHPSG--------SALSKLAASRHG---RIVLYGDDDLSLHLFSIN-GKHLASSESN---- 324 (413)
Q Consensus 264 ---~i~vwd~~~~~~~~~~~~~~~--------~~v~~~~~~~~~---~~l~~~~~d~~i~i~d~~-~~~~~~~~~~---- 324 (413)
.|..+|.++|+.+..+..... .....+....+| ..++.++.+|.++++|.+ ++.+......
T Consensus 281 ~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~ 360 (677)
T 1kb0_A 281 YLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNW 360 (677)
T ss_dssp TTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSS
T ss_pred eeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCc
Confidence 599999999999988764321 112222333467 688999999999999997 5544332211
Q ss_pred -------C-c------------------------eeEEEecCCCCEEEEeCC----------------------------
Q 040361 325 -------G-R------------------------LNCLELSACGQFLVCGGD---------------------------- 344 (413)
Q Consensus 325 -------~-~------------------------i~~~~~s~~~~~l~~~~~---------------------------- 344 (413)
+ + -..++++|++.++++...
T Consensus 361 ~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 440 (677)
T 1kb0_A 361 ASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGW 440 (677)
T ss_dssp EEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTC
T ss_pred ccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccc
Confidence 0 0 125688999888877532
Q ss_pred ---------------CCeEEEEECCCCceEEEecCCCCcEEEEEEccC-CeEEEEcCCCeEEEEEecCCcccccccccc
Q 040361 345 ---------------QGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPE-ECFLAGTKDGCLLVYSIENRRTSLPRNVKS 407 (413)
Q Consensus 345 ---------------dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~dg~i~vw~~~~~~~~~~~~~~~ 407 (413)
.|.|..||+.+++.+.+++. ..++.+..+..+ +.++.++.||.+++||.++++......+.+
T Consensus 441 ~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~ 518 (677)
T 1kb0_A 441 NTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGT 518 (677)
T ss_dssp CCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred ccccccccccCCCCCccEEEEEeCCCCcEEeecCC-CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCC
Confidence 27899999999999887763 333444445545 566678999999999999998776655443
No 232
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.28 E-value=2.8e-13 Score=120.78 Aligned_cols=184 Identities=13% Similarity=0.073 Sum_probs=106.7
Q ss_pred CCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEE
Q 040361 187 DGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCV 266 (413)
Q Consensus 187 ~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~ 266 (413)
++..+++++.||.|+.||..+++ .+..+.. +.+.+..+..++..+++++.||.|+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~-----------------------~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~ 62 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGS-----------------------IKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLY 62 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCC-----------------------EEEEEEC--CCSCCCC-----CCEEECTTTCCEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCC-----------------------EEEEecC--CCceecceEcCCCEEEEeCCCCEEE
Confidence 57789999999999999999887 3333433 3444444556777888888999999
Q ss_pred EEEccCCeEEEEEeCCCCCceee-EEEccCCcEEEEECCCCeEEEEEeC-CceeeeeecCCceeEEEecCCCCEEEEeCC
Q 040361 267 FHTLREGRYVRSLCHPSGSALSK-LAASRHGRIVLYGDDDLSLHLFSIN-GKHLASSESNGRLNCLELSACGQFLVCGGD 344 (413)
Q Consensus 267 vwd~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 344 (413)
.||..+|+.+..+..+....+.+ ..+. .+..+++++.++.++.||.+ |+.+....... ...++|++..+++++.
T Consensus 63 a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~---~~~~~p~~~~v~~~~~ 138 (369)
T 2hz6_A 63 TLGSKNNEGLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF---ADSLSPSTSLLYLGRT 138 (369)
T ss_dssp EC-----CCSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC-------------------------EEEEEE
T ss_pred EEECCCCceeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC---cccccccCCEEEEEec
Confidence 99999998877664331111111 1111 34567778888999999998 55544433222 2356678889999999
Q ss_pred CCeEEEEECCCCceEEEecCCCCcEEEEEEccC----CeEEEEcCCCeEEEEEecCCcccc
Q 040361 345 QGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPE----ECFLAGTKDGCLLVYSIENRRTSL 401 (413)
Q Consensus 345 dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~dg~i~vw~~~~~~~~~ 401 (413)
++.|+.||..+++.+..+..+. .....+.++ +.+++++.||.|+.||.++++...
T Consensus 139 dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W 197 (369)
T 2hz6_A 139 EYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLW 197 (369)
T ss_dssp EEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEE
T ss_pred CCEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEE
Confidence 9999999999998876654221 122333432 567788899999999999887654
No 233
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.27 E-value=4.4e-10 Score=108.89 Aligned_cols=234 Identities=13% Similarity=0.036 Sum_probs=147.4
Q ss_pred ccCCCCCCceee-----ecCCCCccccCCCcCCCcccCCCCcccceecce-eEEEEecCCCCEEEEeecCC---------
Q 040361 91 TTQLQSGGNFTF-----SGSQDPFFGVGADILSPRNVGSPLAESFELGSQ-CFTTMQTPSENFLITCGNWE--------- 155 (413)
Q Consensus 91 ~~~~s~~~~~l~-----~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~g~~d--------- 155 (413)
...+||||++++ .|+....+++++..... .+... .... ...+.|+ |++.++.+...+
T Consensus 133 ~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~-----~~~~~--~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~ 204 (693)
T 3iuj_A 133 QLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQ-----PLETP--LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSAR 204 (693)
T ss_dssp EEEECTTSSEEEEEEECSSCCEEEEEEEETTTCS-----EEEEE--EEEEESCCCEEE-TTTEEEEEESSCCC-------
T ss_pred EEEECCCCCEEEEEEecCCCceEEEEEEECCCCC-----CCccc--cCCceeccEEEe-CCCEEEEEEecCccccccccc
Confidence 346899999887 33334556665422111 11111 1111 2467899 999988876532
Q ss_pred ---CeEEEEEcCCCcE----EEEeec-CCCeEEEEEECCCCCEEEEcc----CCCcEEEEEeccccccccccccceeecC
Q 040361 156 ---NSFQVIALNDGRV----VQSIRQ-HRDVVSCVAVTTDGSILATGS----YDTTVMVWEVIRARAPEKRVRNMQIEAP 223 (413)
Q Consensus 156 ---~~i~i~~~~~~~~----~~~~~~-h~~~v~~~~~~~~~~~l~s~s----~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 223 (413)
..|++|++.++.. +..... |...+..+.|+|||++|+... .+..|.++|+.++..
T Consensus 205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~------------- 271 (693)
T 3iuj_A 205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENA------------- 271 (693)
T ss_dssp CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTC-------------
T ss_pred CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCC-------------
Confidence 3599999987642 333333 455678899999999885433 235789999876641
Q ss_pred CCceeeecCceeeeecCCCCeEEEEEecCCCEEE-EeeCC---CcEEEEEccCCeE--EEEEeCCCCCceeeEEEccCCc
Q 040361 224 RKDYVIVETPFHILCGHDDIITCLYVSVELDIVI-SGSKD---GTCVFHTLREGRY--VRSLCHPSGSALSKLAASRHGR 297 (413)
Q Consensus 224 ~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~-s~~~d---g~i~vwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~ 297 (413)
....+..+....... +++++..|+ ....+ +.|..+|+.++.. ...+..+.. .+. .++++++
T Consensus 272 ---------~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~-~~~--~~s~~g~ 338 (693)
T 3iuj_A 272 ---------PLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQ-QVL--TVHSGSG 338 (693)
T ss_dssp ---------CCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS-SCE--EEEEETT
T ss_pred ---------ceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCC-CEE--EEEEECC
Confidence 234455566655555 566666554 44433 5799999987654 234444433 333 8889888
Q ss_pred EEEEECCCC---eEEEEEeCCceeeeee--cCCceeEEEecCCCCEEEEeCCC----CeEEEEECCCCce
Q 040361 298 IVLYGDDDL---SLHLFSINGKHLASSE--SNGRLNCLELSACGQFLVCGGDQ----GQIVVRSMNSLEV 358 (413)
Q Consensus 298 ~l~~~~~d~---~i~i~d~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~d----g~i~v~d~~~~~~ 358 (413)
.|+....++ .|++||+++....... ..+.+..+.++++++.++....+ +.|+.||+.+++.
T Consensus 339 ~lv~~~~~~g~~~l~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 339 YLFAEYMVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp EEEEEEEETTEEEEEEECTTSCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred EEEEEEEECCeeEEEEEECCCCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 877765443 7899999876655433 34567777888888766655443 7899999987754
No 234
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.25 E-value=3.8e-08 Score=83.43 Aligned_cols=221 Identities=8% Similarity=-0.049 Sum_probs=143.5
Q ss_pred ceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEE-EccCCCcEEEEEeccccccc
Q 040361 134 SQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILA-TGSYDTTVMVWEVIRARAPE 212 (413)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~s~dg~i~iw~~~~~~~~~ 212 (413)
.....+++.++++.+.++...++.|..++...+.....+.........+++++++..|+ +-...+.|.+++++...
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~--- 112 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ--- 112 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC---
Confidence 34567888888888888777788999999976655444433335678999999755554 44556789988875432
Q ss_pred cccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeC---CCcEEEEEccCCeEEEEEeCCCCCceee
Q 040361 213 KRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSK---DGTCVFHTLREGRYVRSLCHPSGSALSK 289 (413)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~v~~ 289 (413)
..............++++|++..|..+.. .+.|..+++.. .....+..........
T Consensus 113 --------------------~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~~~~~~~~~P~g 171 (267)
T 1npe_A 113 --------------------RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRILAQDNLGLPNG 171 (267)
T ss_dssp --------------------CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCEEEECTTCSCEEE
T ss_pred --------------------EEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcEEEEECCCCCCcE
Confidence 01111111245688999996665554443 36888888753 3333332222235788
Q ss_pred EEEccCCcEE-EEECCCCeEEEEEeCCceeee-eecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCC-
Q 040361 290 LAASRHGRIV-LYGDDDLSLHLFSINGKHLAS-SESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVG- 366 (413)
Q Consensus 290 ~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~- 366 (413)
+++++++..| ++-...+.|..+|+.+..... .........++.. .+.++++...++.|.++|..+++.+..+....
T Consensus 172 ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~ 250 (267)
T 1npe_A 172 LTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQ 250 (267)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSC
T ss_pred EEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEccccc
Confidence 9999976555 555667899999998654332 2223344566664 34444455567899999999999888886433
Q ss_pred CcEEEEEEccCCe
Q 040361 367 KIITSLAVTPEEC 379 (413)
Q Consensus 367 ~~v~~~~~~~~~~ 379 (413)
.....+++.|++.
T Consensus 251 ~~p~gi~~~~~~~ 263 (267)
T 1npe_A 251 TRLYGITIALSQC 263 (267)
T ss_dssp CCCCCEEEECSCC
T ss_pred cccceeeecCccC
Confidence 2467788888764
No 235
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.23 E-value=1.1e-09 Score=96.65 Aligned_cols=205 Identities=12% Similarity=0.073 Sum_probs=131.2
Q ss_pred CeEEEEEECCCCCEEEEcc--CCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCC
Q 040361 177 DVVSCVAVTTDGSILATGS--YDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELD 254 (413)
Q Consensus 177 ~~v~~~~~~~~~~~l~s~s--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~ 254 (413)
..+..++++++|+.+++.. .++.+++|.+.+++ +. ..+.. ......|...+..++++++++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~-----~~----~~p~~--------~~~~~~~~~~p~gv~~d~~g~ 79 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG-----LI----PFPPQ--------SGNAIITFDTVLGIKSDGNGI 79 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTE-----EE----ESCCC--------CSSCCCCCSCEEEEEECSSSE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCC-----ee----cCCCc--------ccCcccceeEeeEEEEcCCCc
Confidence 6789999999999988853 23446777775332 00 00000 011224567889999999987
Q ss_pred EEEEeeC-----CCcEEEEEccCCeEEEEEeCCC-----CCceeeEEEccCC-cEEEEEC---CCCeEEEEEeCCceeee
Q 040361 255 IVISGSK-----DGTCVFHTLREGRYVRSLCHPS-----GSALSKLAASRHG-RIVLYGD---DDLSLHLFSINGKHLAS 320 (413)
Q Consensus 255 ~l~s~~~-----dg~i~vwd~~~~~~~~~~~~~~-----~~~v~~~~~~~~~-~~l~~~~---~d~~i~i~d~~~~~~~~ 320 (413)
++++-.. ++.|.+||+.+++.+..+..+. ...+..+++++++ ..+++.. .++.|.+||+.+.....
T Consensus 80 L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r 159 (343)
T 2qe8_A 80 VWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAAR 159 (343)
T ss_dssp EEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEE
T ss_pred EEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEE
Confidence 6665433 5789999999999887776431 2346889999864 4445554 57899999987332222
Q ss_pred -eec------------------------------CCceeEEEecCCCCEEEEeCCCC-eEEEEECC---CCc-----eEE
Q 040361 321 -SES------------------------------NGRLNCLELSACGQFLVCGGDQG-QIVVRSMN---SLE-----VVR 360 (413)
Q Consensus 321 -~~~------------------------------~~~i~~~~~s~~~~~l~~~~~dg-~i~v~d~~---~~~-----~~~ 360 (413)
... ...+..++|+|+|+.|+++...+ .++.++.. .+. ...
T Consensus 160 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 239 (343)
T 2qe8_A 160 VLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGS 239 (343)
T ss_dssp ECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHT
T ss_pred EecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhc
Confidence 110 12357899999999888876655 55555532 111 000
Q ss_pred --EecCCCCcEEEEEEccCCeEE-EEcCCCeEEEEEecCCc
Q 040361 361 --RYSGVGKIITSLAVTPEECFL-AGTKDGCLLVYSIENRR 398 (413)
Q Consensus 361 --~~~~~~~~v~~~~~~~~~~~l-~~~~dg~i~vw~~~~~~ 398 (413)
...++......++++++|.++ +...++.|.+|+.++++
T Consensus 240 ~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~ 280 (343)
T 2qe8_A 240 KIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRA 280 (343)
T ss_dssp TCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTE
T ss_pred ceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCC
Confidence 111233456678999998766 56778899999984443
No 236
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.19 E-value=2.9e-08 Score=82.70 Aligned_cols=203 Identities=13% Similarity=0.052 Sum_probs=139.1
Q ss_pred cEEEEeecCCC--eEEEEEECCCCCEEEEccC--CCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCC-
Q 040361 167 RVVQSIRQHRD--VVSCVAVTTDGSILATGSY--DTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHD- 241 (413)
Q Consensus 167 ~~~~~~~~h~~--~v~~~~~~~~~~~l~s~s~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~- 241 (413)
+.+.++. |.. ....+.|++|+..+++.+. ++.|.++|+.+++ .+..+.-..
T Consensus 10 ~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~-----------------------v~~~i~l~~~ 65 (266)
T 2iwa_A 10 EVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGK-----------------------VENIHKMDDS 65 (266)
T ss_dssp EEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCC-----------------------EEEEEECCTT
T ss_pred eEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCC-----------------------EEEEEecCCC
Confidence 4555664 443 4689999998755555443 5799999999887 233322111
Q ss_pred CCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCcee-ee
Q 040361 242 DIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKHL-AS 320 (413)
Q Consensus 242 ~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~ 320 (413)
.....+++.. +.+.++.-.++.+.++|..+++.+.++..... ....++++++.++++..++.|.++|..+..+ ..
T Consensus 66 ~fgeGi~~~g-~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~---~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~ 141 (266)
T 2iwa_A 66 YFGEGLTLLN-EKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMK---DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKK 141 (266)
T ss_dssp CCEEEEEEET-TEEEEEETTCSEEEEEETTTTEEEEEEECCSS---SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEE
T ss_pred cceEEEEEeC-CEEEEEEecCCEEEEEECCCCcEEEEEECCCC---CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEE
Confidence 1223455542 24445556788999999999999999875411 2244666888777777889999999985443 33
Q ss_pred ee---cC---CceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCC-------------CCcEEEEEEccCC-e-
Q 040361 321 SE---SN---GRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGV-------------GKIITSLAVTPEE-C- 379 (413)
Q Consensus 321 ~~---~~---~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-------------~~~v~~~~~~~~~-~- 379 (413)
.. .. ..++.+.|. +|+..+....++.|.+.|..+++.+..+... ....+.++|+|++ +
T Consensus 142 I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~l 220 (266)
T 2iwa_A 142 HNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRI 220 (266)
T ss_dssp EECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEE
T ss_pred EEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEE
Confidence 22 11 236678887 7766666666889999999999998888631 1357899999995 4
Q ss_pred EEEEcCCCeEEEEEecCCc
Q 040361 380 FLAGTKDGCLLVYSIENRR 398 (413)
Q Consensus 380 ~l~~~~dg~i~vw~~~~~~ 398 (413)
|+++...+.|++.++....
T Consensus 221 fVTgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 221 FVTGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp EEEETTCSEEEEEEEEECC
T ss_pred EEECCCCCeEEEEEEeccc
Confidence 4468888999999998754
No 237
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.19 E-value=7.2e-08 Score=81.69 Aligned_cols=227 Identities=8% Similarity=0.039 Sum_probs=141.4
Q ss_pred CEEEEeecCCCeEEEEEcCCCcE-----EEEeecCCCeEEEEEECCCCCEEE-EccCCCcEEEEEeccccccccccccce
Q 040361 146 NFLITCGNWENSFQVIALNDGRV-----VQSIRQHRDVVSCVAVTTDGSILA-TGSYDTTVMVWEVIRARAPEKRVRNMQ 219 (413)
Q Consensus 146 ~~l~~~g~~d~~i~i~~~~~~~~-----~~~~~~h~~~v~~~~~~~~~~~l~-s~s~dg~i~iw~~~~~~~~~~~~~~~~ 219 (413)
.+|+++. .+.|+.++++.... ...+......+..++|++++..|+ +-..++.|..++.....
T Consensus 2 ~~l~~~~--~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~---------- 69 (267)
T 1npe_A 2 THLLFAQ--TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE---------- 69 (267)
T ss_dssp EEEEEEE--EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC----------
T ss_pred cEEEEEc--CCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCC----------
Confidence 3455543 35788888865432 112222234678999999665555 44557889999986543
Q ss_pred eecCCCceeeecCceeeeecCCCCeEEEEEecCCCEE-EEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcE
Q 040361 220 IEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIV-ISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRI 298 (413)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 298 (413)
....+.........+++++++..+ ++-...+.|.++++.... ...+..........++++|++..
T Consensus 70 -------------~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~-~~~~~~~~~~~P~~i~vd~~~g~ 135 (267)
T 1npe_A 70 -------------PTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ-RRVLFDTGLVNPRGIVTDPVRGN 135 (267)
T ss_dssp -------------CEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSSEEEEEEETTTTE
T ss_pred -------------cEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC-EEEEEECCCCCccEEEEeeCCCE
Confidence 111122222457889999875544 455557789999986433 22232221245789999996555
Q ss_pred EEEEC-C--CCeEEEEEeCCceeeee--ecCCceeEEEecCCCCEEE-EeCCCCeEEEEECCCCceEEEecCCCCcEEEE
Q 040361 299 VLYGD-D--DLSLHLFSINGKHLASS--ESNGRLNCLELSACGQFLV-CGGDQGQIVVRSMNSLEVVRRYSGVGKIITSL 372 (413)
Q Consensus 299 l~~~~-~--d~~i~i~d~~~~~~~~~--~~~~~i~~~~~s~~~~~l~-~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~ 372 (413)
|+.+. . .+.|..+++++...... ........++++++++.|+ +-...+.|.++|.........+.. ......+
T Consensus 136 lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi 214 (267)
T 1npe_A 136 LYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAV 214 (267)
T ss_dssp EEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEE
T ss_pred EEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEE
Confidence 54443 3 46899999886543332 2234678999999876654 445678999999976544333332 3345677
Q ss_pred EEccCCeEE-EEcCCCeEEEEEecCCccc
Q 040361 373 AVTPEECFL-AGTKDGCLLVYSIENRRTS 400 (413)
Q Consensus 373 ~~~~~~~~l-~~~~dg~i~vw~~~~~~~~ 400 (413)
+.. ++.++ +....+.|..++..+++..
T Consensus 215 ~~d-~~~lyva~~~~~~v~~~d~~~g~~~ 242 (267)
T 1npe_A 215 TSY-GKNLYYTDWKTNSVIAMDLAISKEM 242 (267)
T ss_dssp EEE-TTEEEEEETTTTEEEEEETTTTEEE
T ss_pred EEe-CCEEEEEECCCCeEEEEeCCCCCce
Confidence 765 45444 5667789999999877644
No 238
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.17 E-value=2e-08 Score=89.04 Aligned_cols=231 Identities=11% Similarity=0.095 Sum_probs=146.2
Q ss_pred EeeccC------CC--CCCceee-ecCCCCccccCCCcCCCcccC--CCCc-ccc--e-ecceeEEEEecCCCCEEEEee
Q 040361 88 MWLTTQ------LQ--SGGNFTF-SGSQDPFFGVGADILSPRNVG--SPLA-ESF--E-LGSQCFTTMQTPSENFLITCG 152 (413)
Q Consensus 88 ~~~~~~------~s--~~~~~l~-~~~~d~~~~~~~~~~~~~~~~--~~~~-~~~--~-~~~~~~~~~~~~~~~~l~~~g 152 (413)
-|+.|. ++ +++++|+ ++-.++.+.+.+...++++.. ..+. ..+ . .......+..+|+| .++.+.
T Consensus 77 gwn~css~~~~~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~ 155 (462)
T 2ece_A 77 GWNACSSALCPNGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISAL 155 (462)
T ss_dssp EESCCGGGGSTTCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEE
T ss_pred chhhhhhhcccccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcC
Confidence 476553 46 7887775 566677787765444443211 1110 001 1 11245566778999 554433
Q ss_pred cCC------CeEEEEEcCCCcEEEEeecC--C-CeEEEEEECCCCCEEEEcc-------------------CCCcEEEEE
Q 040361 153 NWE------NSFQVIALNDGRVVQSIRQH--R-DVVSCVAVTTDGSILATGS-------------------YDTTVMVWE 204 (413)
Q Consensus 153 ~~d------~~i~i~~~~~~~~~~~~~~h--~-~~v~~~~~~~~~~~l~s~s-------------------~dg~i~iw~ 204 (413)
. + |.|.++|..+++++..+..- . .--..+.|+|+++.+++.. .+.+|.+||
T Consensus 156 g-~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D 234 (462)
T 2ece_A 156 G-NEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWD 234 (462)
T ss_dssp E-ETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEE
T ss_pred C-CcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEE
Confidence 2 3 78999999999999988632 2 2234588899999999884 368999999
Q ss_pred eccccccccccccceeecCCCceeeecCceeeeecC--CCCeEEEEE--ecCCCEEEEee------CCCcEEEEEccCCe
Q 040361 205 VIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGH--DDIITCLYV--SVELDIVISGS------KDGTCVFHTLREGR 274 (413)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~i~~~~~--~~~~~~l~s~~------~dg~i~vwd~~~~~ 274 (413)
+.+++ .+..+.-- ......+.| +|+++++..++ .+++|.+|....++
T Consensus 235 ~~~~k-----------------------~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~ 291 (462)
T 2ece_A 235 LRKRK-----------------------RIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGK 291 (462)
T ss_dssp TTTTE-----------------------EEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTE
T ss_pred CCCCc-----------------------EeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCc
Confidence 98764 23333321 123345555 99999877666 46688887766554
Q ss_pred EE--EEEeCCC-----------------CCceeeEEEccCCcEEEEECC-CCeEEEEEeC-C---ceeeeeecC------
Q 040361 275 YV--RSLCHPS-----------------GSALSKLAASRHGRIVLYGDD-DLSLHLFSIN-G---KHLASSESN------ 324 (413)
Q Consensus 275 ~~--~~~~~~~-----------------~~~v~~~~~~~~~~~l~~~~~-d~~i~i~d~~-~---~~~~~~~~~------ 324 (413)
.. ..+..+. ......+.+++|+++|+++.. .+.|.+||+. . +.+......
T Consensus 292 ~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~ 371 (462)
T 2ece_A 292 WNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRA 371 (462)
T ss_dssp EEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCB
T ss_pred eeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccc
Confidence 22 1111110 235788999999999887764 6799999985 2 222222222
Q ss_pred ---------CceeEEEecCCCCEEEEeC
Q 040361 325 ---------GRLNCLELSACGQFLVCGG 343 (413)
Q Consensus 325 ---------~~i~~~~~s~~~~~l~~~~ 343 (413)
+....++++|||++|+++.
T Consensus 372 ~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 372 DHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred cccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 1368899999999999887
No 239
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.17 E-value=4.8e-09 Score=92.39 Aligned_cols=231 Identities=5% Similarity=-0.080 Sum_probs=143.1
Q ss_pred EEEecCCCCEEEEeec---------CCCeEEEEEcCCCcEEEEeecC-------CCeEEEEEECCCCCEEEEccC--CCc
Q 040361 138 TTMQTPSENFLITCGN---------WENSFQVIALNDGRVVQSIRQH-------RDVVSCVAVTTDGSILATGSY--DTT 199 (413)
Q Consensus 138 ~~~~~~~~~~l~~~g~---------~d~~i~i~~~~~~~~~~~~~~h-------~~~v~~~~~~~~~~~l~s~s~--dg~ 199 (413)
.+.++|+++.+.++.. .++.|.+||..+++.+..+... ......++++|||++++++.. +..
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~ 148 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence 6888999999888752 3689999999999999998643 123567999999999998864 467
Q ss_pred EEE--EEecccccccccccc-c----------eeecCCCceeeecCce-----ee--------eecCCCCeEEEEEecCC
Q 040361 200 VMV--WEVIRARAPEKRVRN-M----------QIEAPRKDYVIVETPF-----HI--------LCGHDDIITCLYVSVEL 253 (413)
Q Consensus 200 i~i--w~~~~~~~~~~~~~~-~----------~~~~~~~~~~~~~~~~-----~~--------~~~h~~~i~~~~~~~~~ 253 (413)
+.+ +|..+-. .-.+.. . ....+.+........- .. +.-...+. . .+++
T Consensus 149 v~V~~iD~~tv~--~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~ 222 (368)
T 1mda_H 149 AGLSVPGASDDQ--LTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYP 222 (368)
T ss_dssp EEEEETTTEEEE--EEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTT
T ss_pred EEEEEEchhhce--EEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccC
Confidence 888 8886611 000000 0 0000111111110000 00 00011222 2 5566
Q ss_pred CEEEEeeCCCcEEEEEccCCe--EEEEEeCCC------C---CceeeEEEccCCcEEEEECC---------CCeEEEEEe
Q 040361 254 DIVISGSKDGTCVFHTLREGR--YVRSLCHPS------G---SALSKLAASRHGRIVLYGDD---------DLSLHLFSI 313 (413)
Q Consensus 254 ~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~------~---~~v~~~~~~~~~~~l~~~~~---------d~~i~i~d~ 313 (413)
..++..+. +.+.+.|+.... .+..+.... + .....++++++++.++++.. ++.+.++|+
T Consensus 223 ~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~ 301 (368)
T 1mda_H 223 GMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTA 301 (368)
T ss_dssp TEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEES
T ss_pred CEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEEC
Confidence 66666666 889999986532 222222110 0 11223789999988876532 235669999
Q ss_pred CCc-eeeeeecCCceeEEEecCCCC-EEEEeC-CCCeEEEEECCCCceEEEecCCCCcEEEEEEcc
Q 040361 314 NGK-HLASSESNGRLNCLELSACGQ-FLVCGG-DQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTP 376 (413)
Q Consensus 314 ~~~-~~~~~~~~~~i~~~~~s~~~~-~l~~~~-~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~ 376 (413)
... .+...........++|+|||+ .+++.. .++.|.++|+.+++.+.++.... ....+++.+
T Consensus 302 ~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~-~P~~i~~~~ 366 (368)
T 1mda_H 302 SVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDK-GPESLSVQN 366 (368)
T ss_dssp SSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCS-CCCEEECCC
T ss_pred CCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCC-CCCEEEeec
Confidence 844 444444445789999999998 455555 58999999999999999998544 345666554
No 240
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.10 E-value=2.2e-09 Score=94.06 Aligned_cols=206 Identities=14% Similarity=0.120 Sum_probs=130.0
Q ss_pred ecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeec
Q 040361 152 GNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVE 231 (413)
Q Consensus 152 g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (413)
++.++.|..|| .+++...........+.++...+++. |..++.+ |..+|. +++...
T Consensus 36 ~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~------------------- 91 (330)
T 3hxj_A 36 GSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKW------------------- 91 (330)
T ss_dssp SSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGG-------------------
T ss_pred EcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEE-------------------
Confidence 45588899999 88888776665556667787877764 5556655 888875 443111
Q ss_pred CceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEE
Q 040361 232 TPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLF 311 (413)
Q Consensus 232 ~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~ 311 (413)
.+...........+. +..+..++.++.|..+|.. ++.......+ ...+.++...+++. +.+++.++.|..|
T Consensus 92 ----~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~-~~~~~~~~~~~~g~-l~vgt~~~~l~~~ 162 (330)
T 3hxj_A 92 ----RFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTK-KAIYATPIVSEDGT-IYVGSNDNYLYAI 162 (330)
T ss_dssp ----GSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECS-SCCCSCCEECTTSC-EEEECTTSEEEEE
T ss_pred ----EEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCC-CceeeeeEEcCCCE-EEEEcCCCEEEEE
Confidence 111111111222222 4456677778888888887 7766666543 23456666666666 5556677888888
Q ss_pred EeCCceeeeee-cCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEccCCeEEEEcCCCeEE
Q 040361 312 SINGKHLASSE-SNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFLAGTKDGCLL 390 (413)
Q Consensus 312 d~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~dg~i~ 390 (413)
|.+++...... ....+.++.+.+++.+.+.. +.|..+| .+++.+..+......+.++...++|.+.+++.++.|.
T Consensus 163 d~~g~~~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~ 238 (330)
T 3hxj_A 163 NPDGTEKWRFKTNDAITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLY 238 (330)
T ss_dssp CTTSCEEEEEECSSCCCSCCEECTTCCEEEES---SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEETTTEEE
T ss_pred CCCCCEeEEEecCCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEcCCCeEE
Confidence 88755444332 23445666676677654443 6788888 6777766666555667777888887777777777777
Q ss_pred EEEe
Q 040361 391 VYSI 394 (413)
Q Consensus 391 vw~~ 394 (413)
.++.
T Consensus 239 ~~~~ 242 (330)
T 3hxj_A 239 AINP 242 (330)
T ss_dssp EECT
T ss_pred EECC
Confidence 7763
No 241
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=99.06 E-value=2.6e-07 Score=80.57 Aligned_cols=235 Identities=8% Similarity=-0.041 Sum_probs=142.8
Q ss_pred EEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeec-------------------CCCeEEEEEECC-CCCEEEEccC
Q 040361 137 FTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQ-------------------HRDVVSCVAVTT-DGSILATGSY 196 (413)
Q Consensus 137 ~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~-------------------h~~~v~~~~~~~-~~~~l~s~s~ 196 (413)
..+++.++++.+.+ +..++.|..|+..+++....... ....+..+++.+ +++ |+.+..
T Consensus 22 ~~i~~d~~g~~l~v-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~d~ 99 (322)
T 2fp8_A 22 NSFTFDSTNKGFYT-SVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIVDC 99 (322)
T ss_dssp CCEECCTTCSSEEE-ECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEEET
T ss_pred eEEEEcCCCCEEEE-EcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEEEC
Confidence 34556777764544 55588999998876554322110 113578899997 565 444444
Q ss_pred CCcEEEEEeccccccccccccceeecCCCceeeecCceeeeec-CCCCeEEEEEec-CCCEEEEeeC-------------
Q 040361 197 DTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCG-HDDIITCLYVSV-ELDIVISGSK------------- 261 (413)
Q Consensus 197 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~i~~~~~~~-~~~~l~s~~~------------- 261 (413)
.+.|..+|..++... .+ .....+ .......+++.+ ++++.++-..
T Consensus 100 ~~~i~~~d~~~g~~~--~~------------------~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~ 159 (322)
T 2fp8_A 100 YYHLSVVGSEGGHAT--QL------------------ATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMD 159 (322)
T ss_dssp TTEEEEECTTCEECE--EE------------------ESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHH
T ss_pred CCCEEEEeCCCCEEE--Ee------------------cccCCCCcccccceEEEecCCCEEEEECCcccccccccceehc
Confidence 455777776544310 00 000000 113467899999 8887766432
Q ss_pred ----CCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEE-CCCCeEEEEEeCCc---eeee-eecCCceeEEEe
Q 040361 262 ----DGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYG-DDDLSLHLFSINGK---HLAS-SESNGRLNCLEL 332 (413)
Q Consensus 262 ----dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~---~~~~-~~~~~~i~~~~~ 332 (413)
++.|..+|..+++....... ......++++++++.++++ ..++.|..|++.+. .... ....+ ...+++
T Consensus 160 ~~~~~g~v~~~d~~~~~~~~~~~~--~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~ 236 (322)
T 2fp8_A 160 TSDKTGRLIKYDPSTKETTLLLKE--LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKR 236 (322)
T ss_dssp HTCCCEEEEEEETTTTEEEEEEEE--ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEE
T ss_pred ccCCCceEEEEeCCCCEEEEeccC--CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEE
Confidence 36788899877764332221 1235679999999866554 56789999998742 1111 12334 788999
Q ss_pred cCCCCEEEEeCC----------CCeEEEEECCCCceEEEecCCC----CcEEEEEEccCCeEE-EEcCCCeEEEEEecCC
Q 040361 333 SACGQFLVCGGD----------QGQIVVRSMNSLEVVRRYSGVG----KIITSLAVTPEECFL-AGTKDGCLLVYSIENR 397 (413)
Q Consensus 333 s~~~~~l~~~~~----------dg~i~v~d~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l-~~~~dg~i~vw~~~~~ 397 (413)
+++|++.++... .+.|..+|. .++.+..+.... ..++++++. +++++ +...++.|..+++...
T Consensus 237 d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~~-~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 237 NADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQEH-DGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp CTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEEE-TTEEEEECSSCSEEEEEEC---
T ss_pred CCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEEe-CCEEEEeecCCCceEEEecccc
Confidence 999987666544 467888887 477777665432 346677764 66655 4557888999998754
Q ss_pred c
Q 040361 398 R 398 (413)
Q Consensus 398 ~ 398 (413)
.
T Consensus 315 ~ 315 (322)
T 2fp8_A 315 G 315 (322)
T ss_dssp -
T ss_pred c
Confidence 3
No 242
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.05 E-value=9.5e-08 Score=91.79 Aligned_cols=205 Identities=13% Similarity=0.129 Sum_probs=132.4
Q ss_pred CCeEEEEEcCCCcEEEEeecCC---C----------------------------eEEEEEECCCCCEEEEccCCCc----
Q 040361 155 ENSFQVIALNDGRVVQSIRQHR---D----------------------------VVSCVAVTTDGSILATGSYDTT---- 199 (413)
Q Consensus 155 d~~i~i~~~~~~~~~~~~~~h~---~----------------------------~v~~~~~~~~~~~l~s~s~dg~---- 199 (413)
+|.|+.+|..+|+.+..+.... . ....++++++...++.++.++.
T Consensus 177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~ 256 (668)
T 1kv9_A 177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNR 256 (668)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCcccc
Confidence 5899999999999998775310 0 1123678888888888877663
Q ss_pred ---------------EEEEEeccccccccccccceeecCCCceeeecCceeeeec--CC-------CCeEEEEEecCCC-
Q 040361 200 ---------------VMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCG--HD-------DIITCLYVSVELD- 254 (413)
Q Consensus 200 ---------------i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~-------~~i~~~~~~~~~~- 254 (413)
|..+|.++++.. -.++. |. .+.....+..+++
T Consensus 257 ~~~~~~~gd~l~~~~v~AlD~~tG~~~-----------------------W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~ 313 (668)
T 1kv9_A 257 EVRSPGGGDNLYLSSILAIRPDTGKLA-----------------------WHYQVTPGDSWDFTATQQITLAELNIDGKP 313 (668)
T ss_dssp HHHSTTCCCCTTTTEEEEECTTTCCEE-----------------------EEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred CCCCCCCCCceeeeeEEEEcCCCCcee-----------------------eEeecCCCccccccCCCCcEEEEeccCCcE
Confidence 888888888732 22221 21 2222233334564
Q ss_pred --EEEEeeCCCcEEEEEccCCeEEEEEeCCC-----------CCc------------------------eeeEEEccCCc
Q 040361 255 --IVISGSKDGTCVFHTLREGRYVRSLCHPS-----------GSA------------------------LSKLAASRHGR 297 (413)
Q Consensus 255 --~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-----------~~~------------------------v~~~~~~~~~~ 297 (413)
.++.++.+|.++++|..+|+.+....... ..+ -..++++|+..
T Consensus 314 ~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g 393 (668)
T 1kv9_A 314 RKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTG 393 (668)
T ss_dssp EEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTT
T ss_pred EEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCC
Confidence 68899999999999999999885443211 000 11267777766
Q ss_pred EEEEE------------------------------------CCCCeEEEEEeC-CceeeeeecCCceeEEEecCCCCEEE
Q 040361 298 IVLYG------------------------------------DDDLSLHLFSIN-GKHLASSESNGRLNCLELSACGQFLV 340 (413)
Q Consensus 298 ~l~~~------------------------------------~~d~~i~i~d~~-~~~~~~~~~~~~i~~~~~s~~~~~l~ 340 (413)
++++. ..++.|..||+. ++.+-......+.....+...+.+++
T Consensus 394 ~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf 473 (668)
T 1kv9_A 394 LVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVF 473 (668)
T ss_dssp EEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEE
T ss_pred EEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEE
Confidence 65541 123789999997 44444444444444445556788999
Q ss_pred EeCCCCeEEEEECCCCceEEEecCCCCcE-EEEEEccCCe-EEE
Q 040361 341 CGGDQGQIVVRSMNSLEVVRRYSGVGKII-TSLAVTPEEC-FLA 382 (413)
Q Consensus 341 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~v-~~~~~~~~~~-~l~ 382 (413)
+++.||.++.||..+++.+.++....... .-+.+..+|+ +++
T Consensus 474 ~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva 517 (668)
T 1kv9_A 474 QGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVA 517 (668)
T ss_dssp EECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred EECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEEEE
Confidence 99999999999999999998886543211 1234445665 443
No 243
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.04 E-value=9.7e-08 Score=87.76 Aligned_cols=225 Identities=11% Similarity=0.034 Sum_probs=155.4
Q ss_pred CEEEEeecCCCeEEEEEcCCCcEEEEeec---------------------------------CC------CeEEEEEECC
Q 040361 146 NFLITCGNWENSFQVIALNDGRVVQSIRQ---------------------------------HR------DVVSCVAVTT 186 (413)
Q Consensus 146 ~~l~~~g~~d~~i~i~~~~~~~~~~~~~~---------------------------------h~------~~v~~~~~~~ 186 (413)
-+.+.+|...|.++|+-+.+++.+..+.- +. +.......|.
T Consensus 15 ~~~f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~ 94 (595)
T 1fwx_A 15 YYGFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSF 94 (595)
T ss_dssp EEEEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEE
T ss_pred EEEEeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCC
Confidence 34566677799999999988887776630 00 1111233333
Q ss_pred -----CCCEEEEccC-CCcEEEEEeccccccccccccceeecCCCceeeecCceeeeec-CCCCeEEEEE-e-cCCCEEE
Q 040361 187 -----DGSILATGSY-DTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCG-HDDIITCLYV-S-VELDIVI 257 (413)
Q Consensus 187 -----~~~~l~s~s~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~i~~~~~-~-~~~~~l~ 257 (413)
||++|+.... +++|.+.|+.+.+ ....+.- .......+++ + |++++++
T Consensus 95 t~g~~DG~~lfVnd~~~~rVavIdl~t~~-----------------------~~~ii~ip~g~~phg~~~~~~p~~~~v~ 151 (595)
T 1fwx_A 95 TEGKYDGRFLFMNDKANTRVARVRCDVMK-----------------------CDAILEIPNAKGIHGLRPQKWPRSNYVF 151 (595)
T ss_dssp ETTEEEEEEEEEEETTTTEEEEEETTTTE-----------------------EEEEEECSSCCSEEEEEECCSSBCSEEE
T ss_pred CCCCcCCCEEEEEcCCCCEEEEEECCCce-----------------------EeeEEeCCCCCCCcceeeeecCCCcEEE
Confidence 7777776554 5679999998876 3332221 2234678887 4 8999888
Q ss_pred Eee------------------CCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCC-------------
Q 040361 258 SGS------------------KDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDL------------- 306 (413)
Q Consensus 258 s~~------------------~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~------------- 306 (413)
.++ .++.+.+.|..+.+...++.... ....++++|+|+++++.+.+.
T Consensus 152 ~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg--~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~ 229 (595)
T 1fwx_A 152 CNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG--NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAE 229 (595)
T ss_dssp EEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS--CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCS
T ss_pred EecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC--CccceEECCCCCEEEEEecCcccCcchhhccccc
Confidence 874 24579999999999998887542 457788999999998887543
Q ss_pred -------------------------eEEEEEeCC---ce-eeeeecCCceeEEEecCCCCEEEEeC-CCCeEEEEECCCC
Q 040361 307 -------------------------SLHLFSING---KH-LASSESNGRLNCLELSACGQFLVCGG-DQGQIVVRSMNSL 356 (413)
Q Consensus 307 -------------------------~i~i~d~~~---~~-~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~v~d~~~~ 356 (413)
.|.+.|... .. +..........++.++|||+++++++ .+..|.++|+.+.
T Consensus 230 ~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~ 309 (595)
T 1fwx_A 230 MDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRF 309 (595)
T ss_dssp EEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGH
T ss_pred cceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECccc
Confidence 255555553 12 22333344567899999999877665 5789999999865
Q ss_pred c------------eEEEecCCCCcEEEEEEccCCeEE-EEcCCCeEEEEEecC
Q 040361 357 E------------VVRRYSGVGKIITSLAVTPEECFL-AGTKDGCLLVYSIEN 396 (413)
Q Consensus 357 ~------------~~~~~~~~~~~v~~~~~~~~~~~l-~~~~dg~i~vw~~~~ 396 (413)
+ .+.++. -......++|+|+|... +.-.|+.|.+|++++
T Consensus 310 ~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 310 DAVFYENADPRSAVVAEPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp HHHHHSCCCGGGGEEECCB-CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred ccccccccCcccceEEEcC-CCCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 3 344444 34568899999999533 577899999999987
No 244
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.00 E-value=2.7e-07 Score=75.92 Aligned_cols=187 Identities=14% Similarity=0.104 Sum_probs=123.9
Q ss_pred cEEEEeecCC--CeEEEEEECCCCCEEEEccCCC--cEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCC
Q 040361 167 RVVQSIRQHR--DVVSCVAVTTDGSILATGSYDT--TVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDD 242 (413)
Q Consensus 167 ~~~~~~~~h~--~~v~~~~~~~~~~~l~s~s~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 242 (413)
+.++++. |. .-...+.|+ ++.++.+.+.+| .|+.+|+.+++ .+..+.-. .
T Consensus 32 ~vv~~~p-hd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgk-----------------------v~~~~~l~-~ 85 (262)
T 3nol_A 32 QIVHSYP-HDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGK-----------------------TLQQIELG-K 85 (262)
T ss_dssp EEEEEEE-CCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCC-----------------------EEEEEECC-T
T ss_pred EEEEEec-CCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCc-----------------------EEEEEecC-C
Confidence 3455553 44 345788998 677777777766 89999999887 23333222 2
Q ss_pred CeE--EEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCc-eee
Q 040361 243 IIT--CLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGK-HLA 319 (413)
Q Consensus 243 ~i~--~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~ 319 (413)
... .++... +++.+..-.++.+.+||..+.+.+.++.... ....++++++.|+.+..++.|.++|..+. .+.
T Consensus 86 ~~FgeGit~~g-~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~----eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~ 160 (262)
T 3nol_A 86 RYFGEGISDWK-DKIVGLTWKNGLGFVWNIRNLRQVRSFNYDG----EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVR 160 (262)
T ss_dssp TCCEEEEEEET-TEEEEEESSSSEEEEEETTTCCEEEEEECSS----CCCCEEECSSCEEECCSSSEEEEECTTTCSEEE
T ss_pred ccceeEEEEeC-CEEEEEEeeCCEEEEEECccCcEEEEEECCC----CceEEecCCCEEEEECCCCeEEEEcCCCCeEEE
Confidence 222 244432 2344444568899999999999999998643 22334467777777777889999999843 333
Q ss_pred eee---cC---CceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCC------------CCcEEEEEEccC-CeE
Q 040361 320 SSE---SN---GRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGV------------GKIITSLAVTPE-ECF 380 (413)
Q Consensus 320 ~~~---~~---~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~------------~~~v~~~~~~~~-~~~ 380 (413)
... .. ..++.+.+. +|+..+..-.++.|.+.|..+++.+..+... ....+.|+|+|+ +++
T Consensus 161 ~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~l 239 (262)
T 3nol_A 161 TITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRL 239 (262)
T ss_dssp EEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEE
T ss_pred EEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEE
Confidence 321 12 334557776 7776666667889999999999998877532 235799999998 455
Q ss_pred E-EEcC
Q 040361 381 L-AGTK 385 (413)
Q Consensus 381 l-~~~~ 385 (413)
+ +|-.
T Consensus 240 fVTGK~ 245 (262)
T 3nol_A 240 FVTGKL 245 (262)
T ss_dssp EEEETT
T ss_pred EEECCC
Confidence 5 4543
No 245
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.99 E-value=3.2e-07 Score=76.40 Aligned_cols=192 Identities=9% Similarity=0.002 Sum_probs=128.7
Q ss_pred EEEEecCCCCEEEEeec-CCCeEEEEEcCCCcEEEEeecCC-CeEEEEEECCCCCEE-EEccCCCcEEEEEecccccccc
Q 040361 137 FTTMQTPSENFLITCGN-WENSFQVIALNDGRVVQSIRQHR-DVVSCVAVTTDGSIL-ATGSYDTTVMVWEVIRARAPEK 213 (413)
Q Consensus 137 ~~~~~~~~~~~l~~~g~-~d~~i~i~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l-~s~s~dg~i~iw~~~~~~~~~~ 213 (413)
..+.+++++..++++|. .++.|+++|+.+++.+..+.-.. .....+++. +..| ++.-.++.+.++|..+.+
T Consensus 24 ~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~---- 97 (266)
T 2iwa_A 24 QGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLS---- 97 (266)
T ss_dssp EEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTE----
T ss_pred ccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCc----
Confidence 45677887655555453 35799999999999998875321 122345554 4444 444568899999998776
Q ss_pred ccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCC----Cceee
Q 040361 214 RVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSG----SALSK 289 (413)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~----~~v~~ 289 (413)
.+..+..-... ...++++++.++.+..++.|.++|..+.+.+..+..... ..++.
T Consensus 98 -------------------v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~ne 156 (266)
T 2iwa_A 98 -------------------NIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNE 156 (266)
T ss_dssp -------------------EEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEE
T ss_pred -------------------EEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCccccccee
Confidence 34444321111 233556777777667789999999999998888764321 13567
Q ss_pred EEEccCCcEEEEECCCCeEEEEEeCC-ceeeeeecC--------------CceeEEEecCCCC-EEEEeCCCCeEEEEEC
Q 040361 290 LAASRHGRIVLYGDDDLSLHLFSING-KHLASSESN--------------GRLNCLELSACGQ-FLVCGGDQGQIVVRSM 353 (413)
Q Consensus 290 ~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~--------------~~i~~~~~s~~~~-~l~~~~~dg~i~v~d~ 353 (413)
+.+. ++...+....++.|.+.|+.. +.+...... ...+.++|+|+++ +++++...+.|.+.++
T Consensus 157 le~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l 235 (266)
T 2iwa_A 157 LEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKL 235 (266)
T ss_dssp EEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred EEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEE
Confidence 7777 776666666788999999984 444433221 3568999999986 4556667788888887
Q ss_pred CCC
Q 040361 354 NSL 356 (413)
Q Consensus 354 ~~~ 356 (413)
...
T Consensus 236 ~~~ 238 (266)
T 2iwa_A 236 HLV 238 (266)
T ss_dssp EEC
T ss_pred ecc
Confidence 653
No 246
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.98 E-value=8.3e-06 Score=80.41 Aligned_cols=240 Identities=13% Similarity=0.167 Sum_probs=157.4
Q ss_pred ceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeec-------CCCeEEEEEECCCCCEEEEccCCCcEEEEEec
Q 040361 134 SQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQ-------HRDVVSCVAVTTDGSILATGSYDTTVMVWEVI 206 (413)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~-------h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~ 206 (413)
..+.++...++|...+.+ .+ -|.+|+..+++....... ....|.++...++|. |..|+.++-|..|+..
T Consensus 263 ~~i~~i~~d~~g~lWigt--~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~ 338 (795)
T 4a2l_A 263 NYIRSLAMDSQNRLWIGT--FN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPI 338 (795)
T ss_dssp SBEEEEEECTTSCEEEEE--SS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGG
T ss_pred CeEEEEEEcCCCCEEEEe--CC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCC
Confidence 457777777888877653 24 588999877765443221 236799999998886 5567777778888876
Q ss_pred cccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeC-----
Q 040361 207 RARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCH----- 281 (413)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~----- 281 (413)
+....... .. .. .-.-....|.++...+++++. .|+.++-|..||..+++...-...
T Consensus 339 ~~~~~~~~-----~~-----------~~-~~~l~~~~V~~i~~d~~g~lW-iGt~~~Gl~~~~~~~~~~~~~~~~~~~~~ 400 (795)
T 4a2l_A 339 RNRFKNIR-----NI-----------PY-KNSLSDNVVSCIVEDKDKNLW-IGTNDGGLNLYNPITQRFTSYTLQEDESA 400 (795)
T ss_dssp GGSSEEEC-----CC-----------TT-SSSCSCSSEEEEEECTTSCEE-EEESSSCEEEECTTTCCEEEECCC-----
T ss_pred cccceEEc-----CC-----------CC-CCCCCCCeeEEEEECCCCCEE-EEECCCCeEEEcCCCCcEEEEecCCCCcc
Confidence 54310000 00 00 000123568899888877644 577777799999877765432211
Q ss_pred --CCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCceeeeee------cCCceeEEEecCCCCEEEEeCCCCeEEEEEC
Q 040361 282 --PSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKHLASSE------SNGRLNCLELSACGQFLVCGGDQGQIVVRSM 353 (413)
Q Consensus 282 --~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~------~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~ 353 (413)
-....|.++...+++..|.+|+.++-|..||.++....... ....|.++...++|++.+... + -+.+||.
T Consensus 401 ~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~-Gl~~~~~ 478 (795)
T 4a2l_A 401 RGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-S-ALVRFNP 478 (795)
T ss_dssp -CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-S-CEEEEET
T ss_pred cCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-C-ceeEEeC
Confidence 11346888888888885666776677999998865544432 245688999888888665554 4 5888998
Q ss_pred CCCceEEEec------CCCCcEEEEEEccCCeEEEEcCCCeEEEEEecCCc
Q 040361 354 NSLEVVRRYS------GVGKIITSLAVTPEECFLAGTKDGCLLVYSIENRR 398 (413)
Q Consensus 354 ~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~dg~i~vw~~~~~~ 398 (413)
.+++...... .....|.++...++|.+..|+. +-|..|+..+++
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~ 528 (795)
T 4a2l_A 479 EQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQEGLD 528 (795)
T ss_dssp TTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCEEEEEEETTE
T ss_pred CCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-CceEEEeCCCCe
Confidence 8765433211 1235799999999998887776 558888887654
No 247
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.97 E-value=2.2e-07 Score=87.41 Aligned_cols=256 Identities=10% Similarity=0.026 Sum_probs=145.0
Q ss_pred CCEEEEeecCCCeEEEEEcCCCcEEEEeecCC----CeEEE-EEECCCCCEEEEccC------CCcEEEEEecccccccc
Q 040361 145 ENFLITCGNWENSFQVIALNDGRVVQSIRQHR----DVVSC-VAVTTDGSILATGSY------DTTVMVWEVIRARAPEK 213 (413)
Q Consensus 145 ~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~----~~v~~-~~~~~~~~~l~s~s~------dg~i~iw~~~~~~~~~~ 213 (413)
+..+++ ++.|+.|..+|..+|+.+....... ..+.+ .... ++ .++.++. ++.|..+|..+++..++
T Consensus 115 ~~~v~v-~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 191 (571)
T 2ad6_A 115 AGQIVK-KQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWR 191 (571)
T ss_dssp TTEEEE-ECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred CCEEEE-EeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CC-EEEEEecCCccCCCCEEEEEECCCCcEEEE
Confidence 444444 4458999999999999987765321 01111 0111 34 4555544 78999999998874432
Q ss_pred cccccee-e---cCC--Cceeeec--C-cee-----ee-ecCCCCeEEEEEecCCCEEEEeeCC----------------
Q 040361 214 RVRNMQI-E---APR--KDYVIVE--T-PFH-----IL-CGHDDIITCLYVSVELDIVISGSKD---------------- 262 (413)
Q Consensus 214 ~~~~~~~-~---~~~--~~~~~~~--~-~~~-----~~-~~h~~~i~~~~~~~~~~~l~s~~~d---------------- 262 (413)
.-..... . .+. ....+.. . ... .. .+-......+++.++...+..+..+
T Consensus 192 ~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~ 271 (571)
T 2ad6_A 192 AFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWT 271 (571)
T ss_dssp EESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTT
T ss_pred EccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeE
Confidence 1110000 0 000 0000000 0 000 00 0000111235566666666655432
Q ss_pred CcEEEEEccCCeEEEEEeCCCCC-----ceee---EEEccCCc---EEEEECCCCeEEEEEeC-CceeeeeecCC-----
Q 040361 263 GTCVFHTLREGRYVRSLCHPSGS-----ALSK---LAASRHGR---IVLYGDDDLSLHLFSIN-GKHLASSESNG----- 325 (413)
Q Consensus 263 g~i~vwd~~~~~~~~~~~~~~~~-----~v~~---~~~~~~~~---~l~~~~~d~~i~i~d~~-~~~~~~~~~~~----- 325 (413)
+.|..+|.++|+.+..+...... .+.. +....+|+ .++.++.+|.++++|.. ++.+.......
T Consensus 272 ~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~ 351 (571)
T 2ad6_A 272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF 351 (571)
T ss_dssp TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred EEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcccc
Confidence 35999999999999888643110 1111 22224674 67788999999999987 55443322111
Q ss_pred ---------ce--------------------------eEEEecCCCCEEEEeC---------------------------
Q 040361 326 ---------RL--------------------------NCLELSACGQFLVCGG--------------------------- 343 (413)
Q Consensus 326 ---------~i--------------------------~~~~~s~~~~~l~~~~--------------------------- 343 (413)
++ ..++++|+..++++..
T Consensus 352 ~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~ 431 (571)
T 2ad6_A 352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAM 431 (571)
T ss_dssp EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred ccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcccccccee
Confidence 11 2457888877776643
Q ss_pred ----------CCCeEEEEECCCCceEEEecCCCCcEEEEE-EccCCeEEEEcCCCeEEEEEecCCccccccc
Q 040361 344 ----------DQGQIVVRSMNSLEVVRRYSGVGKIITSLA-VTPEECFLAGTKDGCLLVYSIENRRTSLPRN 404 (413)
Q Consensus 344 ----------~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~-~~~~~~~l~~~~dg~i~vw~~~~~~~~~~~~ 404 (413)
.+|.|..||+.+++.+.++.... .+.+.. ...++.+++++.||.|+.||.++++......
T Consensus 432 ~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~ 502 (571)
T 2ad6_A 432 YPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK 502 (571)
T ss_dssp EECTTSTTSCCCEEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ccCccccCCCCCCeEEEEECCCCCEEEEecCCC-CccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEe
Confidence 35789999999999887775322 222222 2335777789999999999999998765444
No 248
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.95 E-value=1.9e-06 Score=71.26 Aligned_cols=205 Identities=9% Similarity=0.096 Sum_probs=136.0
Q ss_pred ceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeec-CCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccc
Q 040361 134 SQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQ-HRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPE 212 (413)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~ 212 (413)
.....+++.|+++.|.++...++.|..+|.. ++.++.+.- -....-.|++.+++.++++.-.++.+.++++.......
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~ 105 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVK 105 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEE
T ss_pred cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeee
Confidence 4577888999988888878778999999997 888888742 22457788888988877776677889999886554100
Q ss_pred cccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEcc---CCeEEEEEeC------CC
Q 040361 213 KRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLR---EGRYVRSLCH------PS 283 (413)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~---~~~~~~~~~~------~~ 283 (413)
......+ ... ..........++|+|.++.|.++.+.....+|.+. ....+..+.. ..
T Consensus 106 -~~~~~~~------------~~~-~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~ 171 (255)
T 3qqz_A 106 -ILKKIKI------------PLQ-ESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFT 171 (255)
T ss_dssp -EEEEEEC------------CCS-SCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCC
T ss_pred -eeeeecc------------ccc-cccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccc
Confidence 0000000 000 01234567899999998877777766555555553 1111121211 11
Q ss_pred CCceeeEEEccC-CcEEEEECCCCeEEEEEeCCceeeeeecC----------CceeEEEecCCCCEEEEeCCCCeEEEEE
Q 040361 284 GSALSKLAASRH-GRIVLYGDDDLSLHLFSINGKHLASSESN----------GRLNCLELSACGQFLVCGGDQGQIVVRS 352 (413)
Q Consensus 284 ~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~----------~~i~~~~~s~~~~~l~~~~~dg~i~v~d 352 (413)
-..+.+++++|. +.+++.+.....|..+|.+++.+...... .....++|.++|++.++ ++.+.+++|.
T Consensus 172 ~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~ 250 (255)
T 3qqz_A 172 LDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFT 250 (255)
T ss_dssp SSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEE
T ss_pred cCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEE
Confidence 235688999995 56777778888999999998866554322 26789999999985555 5667777775
Q ss_pred CC
Q 040361 353 MN 354 (413)
Q Consensus 353 ~~ 354 (413)
-.
T Consensus 251 ~~ 252 (255)
T 3qqz_A 251 PQ 252 (255)
T ss_dssp C-
T ss_pred ec
Confidence 43
No 249
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.95 E-value=3.6e-07 Score=85.95 Aligned_cols=131 Identities=9% Similarity=-0.008 Sum_probs=87.3
Q ss_pred cCCC---EEEEeeCCCcEEEEEccCCeEEEEEeCCC------------CCce--------------------------ee
Q 040361 251 VELD---IVISGSKDGTCVFHTLREGRYVRSLCHPS------------GSAL--------------------------SK 289 (413)
Q Consensus 251 ~~~~---~l~s~~~dg~i~vwd~~~~~~~~~~~~~~------------~~~v--------------------------~~ 289 (413)
.+++ .++.++.+|.+.++|..+|+.+....... +.++ ..
T Consensus 311 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~ 390 (571)
T 2ad6_A 311 VNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGV 390 (571)
T ss_dssp ETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCB
T ss_pred cCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCC
Confidence 4663 57788999999999999999988765432 0111 24
Q ss_pred EEEccCCcEEEEEC-------------------------------------CCCeEEEEEeC-CceeeeeecCCceeEEE
Q 040361 290 LAASRHGRIVLYGD-------------------------------------DDLSLHLFSIN-GKHLASSESNGRLNCLE 331 (413)
Q Consensus 290 ~~~~~~~~~l~~~~-------------------------------------~d~~i~i~d~~-~~~~~~~~~~~~i~~~~ 331 (413)
++++|+..++++.. .++.|..||+. ++.+........+....
T Consensus 391 ~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~ 470 (571)
T 2ad6_A 391 DSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGT 470 (571)
T ss_dssp CEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBC
T ss_pred ceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCcccee
Confidence 57788777666643 35789999987 55555544444443333
Q ss_pred ecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCc-EEEEEEccCCeEE
Q 040361 332 LSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKI-ITSLAVTPEECFL 381 (413)
Q Consensus 332 ~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l 381 (413)
+...+..+++++.||.|+.+|.++++.+.++...... -.-+.+..+|+++
T Consensus 471 ~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~y 521 (571)
T 2ad6_A 471 LYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQY 521 (571)
T ss_dssp EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred EEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEE
Confidence 3445677888999999999999999999888743221 1123355677644
No 250
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.95 E-value=2e-07 Score=89.57 Aligned_cols=257 Identities=9% Similarity=0.109 Sum_probs=150.1
Q ss_pred CCEEEEeecCCCeEEEEEcCCCcEEEEeecCCC-eEEEEEECC--CCCEEEEccC------CCcEEEEEecccccccccc
Q 040361 145 ENFLITCGNWENSFQVIALNDGRVVQSIRQHRD-VVSCVAVTT--DGSILATGSY------DTTVMVWEVIRARAPEKRV 215 (413)
Q Consensus 145 ~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~-~v~~~~~~~--~~~~l~s~s~------dg~i~iw~~~~~~~~~~~~ 215 (413)
+..+++ ++.|+.|..+|..+|+.+..+..... ....+.-+| .+..++.+.. +|.|..+|..+++..+...
T Consensus 117 ~~~v~v-~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 195 (668)
T 1kv9_A 117 GDKVYV-GTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY 195 (668)
T ss_dssp BTEEEE-ECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CCEEEE-EcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence 344444 45599999999999999987764210 000011111 1335555543 5899999999987443211
Q ss_pred ccceeecCCCc----eee-e-----cCceeeeecCCCCeEEEEEecCCCEEEEeeCCC-------------------cEE
Q 040361 216 RNMQIEAPRKD----YVI-V-----ETPFHILCGHDDIITCLYVSVELDIVISGSKDG-------------------TCV 266 (413)
Q Consensus 216 ~~~~~~~~~~~----~~~-~-----~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg-------------------~i~ 266 (413)
... ..+... .+. . ...+....++......+++.++...++.++.++ .|.
T Consensus 196 ~~~--~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~ 273 (668)
T 1kv9_A 196 TVP--GDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSIL 273 (668)
T ss_dssp SSC--CCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred ccC--CCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence 000 000000 000 0 000000001222233577888888888887766 399
Q ss_pred EEEccCCeEEEEEeCCC-C-------CceeeEEEccCCc---EEEEECCCCeEEEEEeC-CceeeeeecC----------
Q 040361 267 FHTLREGRYVRSLCHPS-G-------SALSKLAASRHGR---IVLYGDDDLSLHLFSIN-GKHLASSESN---------- 324 (413)
Q Consensus 267 vwd~~~~~~~~~~~~~~-~-------~~v~~~~~~~~~~---~l~~~~~d~~i~i~d~~-~~~~~~~~~~---------- 324 (413)
.+|.++|+.+..+.... . .+.....+..+++ .++.++.+|.++++|.. ++.+......
T Consensus 274 AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~ 353 (668)
T 1kv9_A 274 AIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDL 353 (668)
T ss_dssp EECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECT
T ss_pred EEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccccccc
Confidence 99999999998887431 1 1222222334665 68889999999999987 5544211100
Q ss_pred ---C------------------------ceeEEEecCCCCEEEEe-----------------------------------
Q 040361 325 ---G------------------------RLNCLELSACGQFLVCG----------------------------------- 342 (413)
Q Consensus 325 ---~------------------------~i~~~~~s~~~~~l~~~----------------------------------- 342 (413)
. ....++++|+...+++.
T Consensus 354 ~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~ 433 (668)
T 1kv9_A 354 ATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPA 433 (668)
T ss_dssp TTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCG
T ss_pred ccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCC
Confidence 0 01126778876665541
Q ss_pred -CCCCeEEEEECCCCceEEEecCCCCcEEEEEEc-cCCeEEEEcCCCeEEEEEecCCcccccccc
Q 040361 343 -GDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVT-PEECFLAGTKDGCLLVYSIENRRTSLPRNV 405 (413)
Q Consensus 343 -~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~dg~i~vw~~~~~~~~~~~~~ 405 (413)
..+|.|..||+.+++.+.+.+.+. +.....+. ..+.+++++.||.|+.||.++++......+
T Consensus 434 ~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~ 497 (668)
T 1kv9_A 434 AVVSGALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEA 497 (668)
T ss_dssp GGCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCccceEEEEeCCCCcEEEEccCCC-CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecC
Confidence 134889999999999987776432 22222232 346677899999999999999887655443
No 251
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.91 E-value=4.1e-06 Score=75.91 Aligned_cols=235 Identities=9% Similarity=0.015 Sum_probs=142.0
Q ss_pred eEEEEecC-CCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccC-CC---cEEEEEeccccc
Q 040361 136 CFTTMQTP-SENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSY-DT---TVMVWEVIRARA 210 (413)
Q Consensus 136 ~~~~~~~~-~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~-dg---~i~iw~~~~~~~ 210 (413)
...+++.| ++..|.++-. .+.|+.+|+..++...... .......++|++++++|+.+.. ++ ...+|-...+..
T Consensus 139 P~~lavdp~~~g~Lyv~d~-~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~ 216 (430)
T 3tc9_A 139 AVWLSFDPKNHNHLYLVGE-QHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF 216 (430)
T ss_dssp CCEEEEETTEEEEEEEEEB-TEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS
T ss_pred CCEEEECCCCCCeEEEEeC-CCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce
Confidence 45667787 4566666554 3889999997766554443 4566889999999996665543 22 122333233321
Q ss_pred cccccccceeecCCCceeeecCceeeeecCCCCeEEEEEec-CCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceee
Q 040361 211 PEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSV-ELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSK 289 (413)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~ 289 (413)
. ....+.. ......++++| ++.++++-..++.|..++...+................
T Consensus 217 ~---------------------~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~g 274 (430)
T 3tc9_A 217 K---------------------VITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFH 274 (430)
T ss_dssp C---------------------SEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEE
T ss_pred e---------------------eeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCccee
Confidence 0 0011211 23346788999 67767676678899999998776533333322335678
Q ss_pred EEEccCCc-EEEEECCCCeEEEEEeCCc--ee----eeeec-------C--------Ccee-EEEec--------CCCCE
Q 040361 290 LAASRHGR-IVLYGDDDLSLHLFSINGK--HL----ASSES-------N--------GRLN-CLELS--------ACGQF 338 (413)
Q Consensus 290 ~~~~~~~~-~l~~~~~d~~i~i~d~~~~--~~----~~~~~-------~--------~~i~-~~~~s--------~~~~~ 338 (413)
++++|+++ ++++-...+.|..++.++. .+ ..... . .... .++.. ++|.+
T Consensus 275 ia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~l 354 (430)
T 3tc9_A 275 IQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDF 354 (430)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEE
T ss_pred EEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeE
Confidence 99999999 4555567789999988742 11 11110 0 1123 45553 34666
Q ss_pred EEEeCCCCeEEEEECCCCceEEEecC----C-------------CCcEEEEEEcc-CCeEE-EEcCCCeEEEEEec
Q 040361 339 LVCGGDQGQIVVRSMNSLEVVRRYSG----V-------------GKIITSLAVTP-EECFL-AGTKDGCLLVYSIE 395 (413)
Q Consensus 339 l~~~~~dg~i~v~d~~~~~~~~~~~~----~-------------~~~v~~~~~~~-~~~~l-~~~~dg~i~vw~~~ 395 (413)
+++-..++.|+.++ .+++....... . -.....++++| ++.++ +-..+..|+.++++
T Consensus 355 yvaD~~n~~I~~i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 355 YFCDRENHCIRILT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EEEEGGGTEEEEEC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEEECCCcEEEEEC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 66666778899988 45544322211 0 12578999999 47665 45567788888765
No 252
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.91 E-value=8.1e-06 Score=70.78 Aligned_cols=228 Identities=13% Similarity=0.050 Sum_probs=140.8
Q ss_pred EEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEE-EEccCCCcEEEEEeccccccccccccceeecCCC
Q 040361 147 FLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSIL-ATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRK 225 (413)
Q Consensus 147 ~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 225 (413)
+|+++. ...|+..|+.+.+....+. ....+..++|++++..| ++-..++.|..+++.......
T Consensus 3 ~ll~~~--~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~------------- 66 (316)
T 1ijq_A 3 YLFFTN--RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS------------- 66 (316)
T ss_dssp EEEEEC--BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------------------
T ss_pred EEEEEC--CCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCc-------------
Confidence 344433 4679999998877666554 34567899999865544 455567889999886521000
Q ss_pred ceeeecCceeeeecCCCCeEEEEEecCCC-EEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEEC-
Q 040361 226 DYVIVETPFHILCGHDDIITCLYVSVELD-IVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGD- 303 (413)
Q Consensus 226 ~~~~~~~~~~~~~~h~~~i~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~- 303 (413)
.....+...-.....+++.+.+. +.++-...+.|.+.|+........+.. .......++++|.+..|+.+.
T Consensus 67 ------~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~-~~~~P~~iavdp~~g~ly~~d~ 139 (316)
T 1ijq_A 67 ------SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE-NGSKPRAIVVDPVHGFMYWTDW 139 (316)
T ss_dssp -------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEEC-TTCCEEEEEEETTTTEEEEEEC
T ss_pred ------ccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEEC-CCCCcceEEeCCCCCEEEEEcc
Confidence 01111222223457888986544 455556678999999864433222322 234678999998655554443
Q ss_pred CC-CeEEEEEeCCceeeee--ecCCceeEEEecCCCCEEEEe-CCCCeEEEEECCCCceEEEe-c--CCCCcEEEEEEcc
Q 040361 304 DD-LSLHLFSINGKHLASS--ESNGRLNCLELSACGQFLVCG-GDQGQIVVRSMNSLEVVRRY-S--GVGKIITSLAVTP 376 (413)
Q Consensus 304 ~d-~~i~i~d~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~-~~dg~i~v~d~~~~~~~~~~-~--~~~~~v~~~~~~~ 376 (413)
.. +.|..+++++...... ..-.....+++++++..|+.+ ...+.|..+|+.... ...+ . ........+++..
T Consensus 140 ~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~~ 218 (316)
T 1ijq_A 140 GTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFE 218 (316)
T ss_dssp SSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEET
T ss_pred CCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEEC
Confidence 33 7899999987654433 233567899999887666554 466799999987432 2222 2 1234567888864
Q ss_pred CCeEEEEcCCCeEEEEEecCCc
Q 040361 377 EECFLAGTKDGCLLVYSIENRR 398 (413)
Q Consensus 377 ~~~~l~~~~dg~i~vw~~~~~~ 398 (413)
+..+++-...+.|..++..+++
T Consensus 219 ~~ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 219 DKVFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp TEEEEEETTTTEEEEEETTTCC
T ss_pred CEEEEEECCCCeEEEEeCCCCc
Confidence 4445567777889988876654
No 253
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.91 E-value=4.9e-07 Score=85.07 Aligned_cols=254 Identities=10% Similarity=0.051 Sum_probs=143.4
Q ss_pred EEEeecCCCeEEEEEcCCCcEEEEeecCCC----eEEE-EEECCCCCEEEEcc------CCCcEEEEEeccccccccccc
Q 040361 148 LITCGNWENSFQVIALNDGRVVQSIRQHRD----VVSC-VAVTTDGSILATGS------YDTTVMVWEVIRARAPEKRVR 216 (413)
Q Consensus 148 l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~----~v~~-~~~~~~~~~l~s~s------~dg~i~iw~~~~~~~~~~~~~ 216 (413)
+++ ++.|+.|..+|..+|+.+........ .+.+ ... .++ .++.++ .+|.|+.+|..+++..++.-.
T Consensus 124 V~v-~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 124 ILK-TQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp EEE-ECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred EEE-EcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcC
Confidence 444 55599999999999999877653220 1111 011 134 455554 379999999998874432111
Q ss_pred cceee-c---CCC--ceeee-------cC-ceeeeecCCCCe-EEEEEecCCCEEEEeeCC----------------CcE
Q 040361 217 NMQIE-A---PRK--DYVIV-------ET-PFHILCGHDDII-TCLYVSVELDIVISGSKD----------------GTC 265 (413)
Q Consensus 217 ~~~~~-~---~~~--~~~~~-------~~-~~~~~~~h~~~i-~~~~~~~~~~~l~s~~~d----------------g~i 265 (413)
..... . +.. ..... .+ .-..+..-...+ ..+++.++...++.+..+ +.|
T Consensus 201 ~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv 280 (599)
T 1w6s_A 201 TGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTI 280 (599)
T ss_dssp SSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEE
T ss_pred CCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceE
Confidence 00000 0 000 00000 00 000000001111 134566777777766654 379
Q ss_pred EEEEccCCeEEEEEeCCCCC-----ceee-EEEc---cCC---cEEEEECCCCeEEEEEeC-CceeeeeecC--------
Q 040361 266 VFHTLREGRYVRSLCHPSGS-----ALSK-LAAS---RHG---RIVLYGDDDLSLHLFSIN-GKHLASSESN-------- 324 (413)
Q Consensus 266 ~vwd~~~~~~~~~~~~~~~~-----~v~~-~~~~---~~~---~~l~~~~~d~~i~i~d~~-~~~~~~~~~~-------- 324 (413)
..+|.++|+.+..+...... .... +.+. .+| ..++.++.+|.++++|.+ ++.+......
T Consensus 281 ~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~ 360 (599)
T 1w6s_A 281 FGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKS 360 (599)
T ss_dssp EEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEE
T ss_pred EEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccc
Confidence 99999999999888753211 0111 1122 456 567789999999999987 5544332211
Q ss_pred -----C-c--------------------------eeEEEecCCCCEEEEe------------------------------
Q 040361 325 -----G-R--------------------------LNCLELSACGQFLVCG------------------------------ 342 (413)
Q Consensus 325 -----~-~--------------------------i~~~~~s~~~~~l~~~------------------------------ 342 (413)
+ + -..++++|+..++++.
T Consensus 361 ~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~ 440 (599)
T 1w6s_A 361 VDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYP 440 (599)
T ss_dssp ECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred cccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceecc
Confidence 0 1 1245677766655442
Q ss_pred ---C------CCCeEEEEECCCCceEEEecCCCCcEE-EEEEccCCeEEEEcCCCeEEEEEecCCcccccccc
Q 040361 343 ---G------DQGQIVVRSMNSLEVVRRYSGVGKIIT-SLAVTPEECFLAGTKDGCLLVYSIENRRTSLPRNV 405 (413)
Q Consensus 343 ---~------~dg~i~v~d~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~dg~i~vw~~~~~~~~~~~~~ 405 (413)
+ ..|.|..||+.+++.+.+.+.. .+.. .......+.++.++.||.|+.||.++++......+
T Consensus 441 ~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l 512 (599)
T 1w6s_A 441 GPKGDRQNYEGLGQIKAYNAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKI 512 (599)
T ss_dssp CTTSBTTTTBCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCcCCcccCCCcCeEEEEECCCCCEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeC
Confidence 1 3478999999999988776521 1111 11223356777899999999999999987765543
No 254
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.89 E-value=9.4e-06 Score=71.38 Aligned_cols=227 Identities=8% Similarity=-0.035 Sum_probs=141.2
Q ss_pred CCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEE-EccCCCcEEEEEeccccccccccccceeecC
Q 040361 145 ENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILA-TGSYDTTVMVWEVIRARAPEKRVRNMQIEAP 223 (413)
Q Consensus 145 ~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 223 (413)
...|+++. ...|+..++........+.. ...+..++|++.+..|+ +-...+.|..+++....
T Consensus 44 ~~~ll~~~--~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~-------------- 106 (349)
T 3v64_C 44 EPVLLFAN--RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSN-------------- 106 (349)
T ss_dssp CCEEEEEC--BSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--------------
T ss_pred CceeEeec--ccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCC--------------
Confidence 34455433 45688888866555444443 34578999997655554 44567888888876553
Q ss_pred CCceeeecCceeeeecCCCCeEEEEEecCCC-EEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEE-EE
Q 040361 224 RKDYVIVETPFHILCGHDDIITCLYVSVELD-IVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIV-LY 301 (413)
Q Consensus 224 ~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~ 301 (413)
....+.........+++.+.+. ++++-...+.|.+.++.... ...+..........++++|.+..| ++
T Consensus 107 ---------~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~-~~~l~~~~l~~P~~iavdp~~g~ly~t 176 (349)
T 3v64_C 107 ---------VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH-RKVLLWQSLEKPRAIALHPMEGTIYWT 176 (349)
T ss_dssp ---------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECTTCSCEEEEEEETTTTEEEEE
T ss_pred ---------ceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc-eEEEEeCCCCCcceEEEecCcCeEEEe
Confidence 1111222223456788887544 44555567789999986443 233322223457899999865544 44
Q ss_pred ECCC-CeEEEEEeCCceeeee--ecCCceeEEEecCCCCEEEEe-CCCCeEEEEECCCCceEEEecCCCCcEEEEEEccC
Q 040361 302 GDDD-LSLHLFSINGKHLASS--ESNGRLNCLELSACGQFLVCG-GDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPE 377 (413)
Q Consensus 302 ~~~d-~~i~i~d~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~-~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~ 377 (413)
-... +.|..+++++...... ..-.....++++|++..|+.+ ...+.|..+|+........+.........+++..+
T Consensus 177 d~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~~~ 256 (349)
T 3v64_C 177 DWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFED 256 (349)
T ss_dssp ECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETT
T ss_pred ccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEECC
Confidence 4455 7899999987554432 233457899999876655554 55678999998754333333333456788888544
Q ss_pred CeEEEEcCCCeEEEEEecCCc
Q 040361 378 ECFLAGTKDGCLLVYSIENRR 398 (413)
Q Consensus 378 ~~~l~~~~dg~i~vw~~~~~~ 398 (413)
..+++-...+.|..++..+++
T Consensus 257 ~ly~td~~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 257 SLYWTDWHTKSINSANKFTGK 277 (349)
T ss_dssp EEEEEETTTTEEEEEETTTCC
T ss_pred EEEEecCCCCeEEEEEccCCC
Confidence 445576677888888754544
No 255
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.89 E-value=4.4e-05 Score=75.25 Aligned_cols=231 Identities=12% Similarity=0.153 Sum_probs=153.5
Q ss_pred cceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeec--------CCCeEEEEEECCCCCEEEEccCCCcEEEEE
Q 040361 133 GSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQ--------HRDVVSCVAVTTDGSILATGSYDTTVMVWE 204 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~--------h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~ 204 (413)
...+.++...++|...+ |..++-|..|+..+++....... ....|.++...++++.|..|+.++-|..||
T Consensus 356 ~~~V~~i~~d~~g~lWi--Gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d 433 (795)
T 4a2l_A 356 DNVVSCIVEDKDKNLWI--GTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILH 433 (795)
T ss_dssp CSSEEEEEECTTSCEEE--EESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEE
T ss_pred CCeeEEEEECCCCCEEE--EECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEe
Confidence 34577777777887766 45466799999877765443211 246799999988888566777777799999
Q ss_pred eccccccccccccceeecCCCceeeecCceeeee-----cCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEE
Q 040361 205 VIRARAPEKRVRNMQIEAPRKDYVIVETPFHILC-----GHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSL 279 (413)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 279 (413)
..+++. ..+. .....|.++...+++.+.+.. . +-+.+||..+++.....
T Consensus 434 ~~~~~~------------------------~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~~~~~~ 487 (795)
T 4a2l_A 434 RNSGQV------------------------ENFNQRNSQLVNENVYAILPDGEGNLWLGT-L-SALVRFNPEQRSFTTIE 487 (795)
T ss_dssp TTTCCE------------------------EEECTTTSCCSCSCEEEEEECSSSCEEEEE-S-SCEEEEETTTTEEEECC
T ss_pred CCCCcE------------------------EEeecCCCCcCCCeeEEEEECCCCCEEEEe-c-CceeEEeCCCCeEEEcc
Confidence 876541 1111 234578899888888765544 4 45888998877654322
Q ss_pred eC-----CCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCceeeee-------ecCCceeEEEecCCCCEEEEeCCCCe
Q 040361 280 CH-----PSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKHLASS-------ESNGRLNCLELSACGQFLVCGGDQGQ 347 (413)
Q Consensus 280 ~~-----~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-------~~~~~i~~~~~s~~~~~l~~~~~dg~ 347 (413)
.. .....|.++...+++.+.+... +-|..||.++...... .....|.++...++|++.+... . -
T Consensus 488 ~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-G 563 (795)
T 4a2l_A 488 KEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDIQKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-G 563 (795)
T ss_dssp BCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTEEEECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-C
T ss_pred ccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCeEEEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-C
Confidence 11 1124688898998888776665 4588899875544211 1234688899988898665544 3 5
Q ss_pred EEEEECCCCceEEEec---C-CCCcEEEEEEccCCeEEEEcCCCeEEEEEecCC
Q 040361 348 IVVRSMNSLEVVRRYS---G-VGKIITSLAVTPEECFLAGTKDGCLLVYSIENR 397 (413)
Q Consensus 348 i~v~d~~~~~~~~~~~---~-~~~~v~~~~~~~~~~~l~~~~dg~i~vw~~~~~ 397 (413)
+..||..+.+.. .+. + ....|.++...++|.+..++..| |..|+.+++
T Consensus 564 l~~~d~~~~~~~-~~~~~~gl~~~~i~~i~~d~~g~lWi~t~~G-l~~~~~~~~ 615 (795)
T 4a2l_A 564 FYCFNEKDKQIK-RYNTTNGLPNNVVYGILEDSFGRLWLSTNRG-ISCFNPETE 615 (795)
T ss_dssp EEEEETTTTEEE-EECGGGTCSCSCEEEEEECTTSCEEEEETTE-EEEEETTTT
T ss_pred ceeECCCCCcEE-EeCCCCCCchhheEEEEECCCCCEEEEcCCc-eEEEcCCCC
Confidence 788998775443 332 1 23568999999888877766544 666776654
No 256
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.89 E-value=9.9e-06 Score=69.92 Aligned_cols=219 Identities=11% Similarity=0.046 Sum_probs=131.1
Q ss_pred ceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCC--cEEEEEecccccc
Q 040361 134 SQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDT--TVMVWEVIRARAP 211 (413)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg--~i~iw~~~~~~~~ 211 (413)
.....+++.++++.+ ++...++.|..||... +....+. -......+++.++++++++..... .|..++..+++
T Consensus 32 ~~pegia~~~~g~ly-v~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~-- 106 (306)
T 2p4o_A 32 TFLENLASAPDGTIF-VTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT-- 106 (306)
T ss_dssp CCEEEEEECTTSCEE-EEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC--
T ss_pred CCcceEEECCCCCEE-EEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCe--
Confidence 345667888887744 4454578999998764 4443333 345788999999998666554332 35555655544
Q ss_pred ccccccceeecCCCceeeecCceeeee--cCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeE-EEEEe------C-
Q 040361 212 EKRVRNMQIEAPRKDYVIVETPFHILC--GHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRY-VRSLC------H- 281 (413)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~------~- 281 (413)
+..+. ........++..+++..+++-..++.|..+|...++. +.... .
T Consensus 107 ----------------------~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~ 164 (306)
T 2p4o_A 107 ----------------------VETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNS 164 (306)
T ss_dssp ----------------------EEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSST
T ss_pred ----------------------EEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccc
Confidence 11111 1112223444445544455544688899999876532 21111 0
Q ss_pred -CCCCceeeEEEccCCcEE-EEECCCCeEEEEEeCC-cee---eeeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCC
Q 040361 282 -PSGSALSKLAASRHGRIV-LYGDDDLSLHLFSING-KHL---ASSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNS 355 (413)
Q Consensus 282 -~~~~~v~~~~~~~~~~~l-~~~~~d~~i~i~d~~~-~~~---~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~ 355 (413)
..-...+.+ +++++.+ ++-...+.|..|++.+ ..+ ...........++++++|+++++....+.|.++|..
T Consensus 165 ~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~- 241 (306)
T 2p4o_A 165 ESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD- 241 (306)
T ss_dssp TCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-
T ss_pred cCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-
Confidence 011134445 7777655 4556678999999874 111 111112356779999999987777778899999975
Q ss_pred CceE--EEecCCCCcEEEEEEc---cCC-eEEE
Q 040361 356 LEVV--RRYSGVGKIITSLAVT---PEE-CFLA 382 (413)
Q Consensus 356 ~~~~--~~~~~~~~~v~~~~~~---~~~-~~l~ 382 (413)
++.. ..+......+++++|. |++ .+++
T Consensus 242 G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyV 274 (306)
T 2p4o_A 242 RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYV 274 (306)
T ss_dssp CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEE
T ss_pred CCEEEEeecccccCCceEEEEecccCCCCEEEE
Confidence 5553 2344334568999998 784 4443
No 257
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.87 E-value=1.7e-06 Score=71.18 Aligned_cols=187 Identities=12% Similarity=0.057 Sum_probs=124.6
Q ss_pred cEEEEeecCC--CeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCe
Q 040361 167 RVVQSIRQHR--DVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDII 244 (413)
Q Consensus 167 ~~~~~~~~h~--~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i 244 (413)
+.+.++. |. .-...+.|+ ++.++++.+.+|.|+++|+++++. +..+......-
T Consensus 44 ~Vv~~~p-hd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv-----------------------~~~~l~~~~Fg 98 (268)
T 3nok_A 44 HIIREYP-HATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQP-----------------------VWMERLGNIFA 98 (268)
T ss_dssp EEEEEEE-CCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSC-----------------------SEEEECTTCCE
T ss_pred EEEEEEc-CCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcE-----------------------EeEECCCCcce
Confidence 4455553 43 334788887 466777888889999999999872 23221111111
Q ss_pred EEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCcee-eee--
Q 040361 245 TCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKHL-ASS-- 321 (413)
Q Consensus 245 ~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~-- 321 (413)
..+++.. +++.+..-.++.+.+||..+.+.+.++..... -..++ ++++.|+.+..++.|.++|..+..+ ...
T Consensus 99 eGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~e--GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V 173 (268)
T 3nok_A 99 EGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERTTRYSGE--GWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQV 173 (268)
T ss_dssp EEEEECS-SCEEEEESSSCEEEEEETTTTEEEEEEECSSC--CCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred eEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEEEeCCCc--eeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEe
Confidence 2344433 34555556789999999999999999986422 23344 5678888888889999999985433 322
Q ss_pred -ecC---CceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCC-------------CCcEEEEEEccC-CeEE-E
Q 040361 322 -ESN---GRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGV-------------GKIITSLAVTPE-ECFL-A 382 (413)
Q Consensus 322 -~~~---~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-------------~~~v~~~~~~~~-~~~l-~ 382 (413)
... ..++.+.|. +|+..+..-.++.|.+.|..+++.+..+... .+..+.|+|+|+ ++++ +
T Consensus 174 ~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVT 252 (268)
T 3nok_A 174 KLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMT 252 (268)
T ss_dssp EETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEE
T ss_pred CCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEe
Confidence 122 244667776 7766665556889999999999998877521 246799999998 4444 4
Q ss_pred Ec
Q 040361 383 GT 384 (413)
Q Consensus 383 ~~ 384 (413)
|-
T Consensus 253 GK 254 (268)
T 3nok_A 253 GK 254 (268)
T ss_dssp ET
T ss_pred CC
Confidence 54
No 258
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.86 E-value=5.2e-06 Score=67.71 Aligned_cols=197 Identities=13% Similarity=0.059 Sum_probs=126.3
Q ss_pred cEEEEeecCC--CeEEEEEECCCCCEEEEccCCC--cEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCC
Q 040361 167 RVVQSIRQHR--DVVSCVAVTTDGSILATGSYDT--TVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDD 242 (413)
Q Consensus 167 ~~~~~~~~h~--~~v~~~~~~~~~~~l~s~s~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 242 (413)
+.+.++. |. .-...+.|++ +.++.+.+.+| .|+.+|+.+++ .+....-...
T Consensus 10 ~v~~~~p-hd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgk-----------------------v~~~~~l~~~ 64 (243)
T 3mbr_X 10 RVVKRYP-HDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGR-----------------------ILQRAEVPPP 64 (243)
T ss_dssp EEEEEEE-CCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCC-----------------------EEEEEECCTT
T ss_pred EEEEEcC-CCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCC-----------------------EEEEEeCCCC
Confidence 3455553 44 4467899986 56666666654 89999999887 2333322211
Q ss_pred C-eEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCcee-ee
Q 040361 243 I-ITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKHL-AS 320 (413)
Q Consensus 243 ~-i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~ 320 (413)
. -..+++.. +++.+..-.++.+.+||..+.+.+.++..... ...+.+++..|+.+..++.|.++|..+..+ ..
T Consensus 65 ~fgeGi~~~~-~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~----Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~ 139 (243)
T 3mbr_X 65 YFGAGIVAWR-DRLIQLTWRNHEGFVYDLATLTPRARFRYPGE----GWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGS 139 (243)
T ss_dssp CCEEEEEEET-TEEEEEESSSSEEEEEETTTTEEEEEEECSSC----CCEEEECSSCEEEECSSSEEEEECTTTCCEEEE
T ss_pred cceeEEEEeC-CEEEEEEeeCCEEEEEECCcCcEEEEEeCCCC----ceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEE
Confidence 1 12334432 34445556789999999999999999986532 233446677777777789999999985433 22
Q ss_pred ee---cC---CceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCC-------------CCcEEEEEEccC-CeE
Q 040361 321 SE---SN---GRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGV-------------GKIITSLAVTPE-ECF 380 (413)
Q Consensus 321 ~~---~~---~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-------------~~~v~~~~~~~~-~~~ 380 (413)
.. .. ..++.+.+. +|+..+..-.+..|.+.|..+++.+..+... .+..+.|+++|+ +++
T Consensus 140 I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~l 218 (243)
T 3mbr_X 140 IKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRL 218 (243)
T ss_dssp EECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEE
T ss_pred EEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEE
Confidence 21 11 344566665 6766666656789999999999998877511 235799999997 455
Q ss_pred E-EEcCCCeEEEEEe
Q 040361 381 L-AGTKDGCLLVYSI 394 (413)
Q Consensus 381 l-~~~~dg~i~vw~~ 394 (413)
+ +|-.=..++--.+
T Consensus 219 fVTGK~wp~~~~v~~ 233 (243)
T 3mbr_X 219 FVTGKRWPMLYEIRL 233 (243)
T ss_dssp EEEETTCSEEEEEEE
T ss_pred EEECCCCCcEEEEEE
Confidence 5 4544343333333
No 259
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.86 E-value=7.2e-07 Score=84.02 Aligned_cols=259 Identities=14% Similarity=0.087 Sum_probs=145.8
Q ss_pred CCEEEEeecCCCeEEEEEcCCCcEEEEeecCCC----eEE---EEEEC-CCCC-EEEEcc------CCCcEEEEEecccc
Q 040361 145 ENFLITCGNWENSFQVIALNDGRVVQSIRQHRD----VVS---CVAVT-TDGS-ILATGS------YDTTVMVWEVIRAR 209 (413)
Q Consensus 145 ~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~----~v~---~~~~~-~~~~-~l~s~s------~dg~i~iw~~~~~~ 209 (413)
+..+++ ++.|+.|..+|..+|+.+........ .+. .+.=. .+++ .+++++ .++.|..+|..+++
T Consensus 117 ~~~v~~-~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~ 195 (582)
T 1flg_A 117 GDKVFF-GTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGE 195 (582)
T ss_dssp TTEEEE-EETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCC
T ss_pred CCEEEE-EeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCC
Confidence 344444 45599999999999999877654321 111 11100 1233 566665 37899999999887
Q ss_pred cccccccc-ceeecCCCceeee--cCc----------------eeeeecCCCCeEEEEEecCCCEEEEeeC---------
Q 040361 210 APEKRVRN-MQIEAPRKDYVIV--ETP----------------FHILCGHDDIITCLYVSVELDIVISGSK--------- 261 (413)
Q Consensus 210 ~~~~~~~~-~~~~~~~~~~~~~--~~~----------------~~~~~~h~~~i~~~~~~~~~~~l~s~~~--------- 261 (413)
..+..-.. .......+..... ... .....+. ..-..+++.++...++.+..
T Consensus 196 ~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg-~~w~~~a~d~~~g~vyv~~gn~~~~~~~~ 274 (582)
T 1flg_A 196 EIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGG-APWQSASFDAETNTIIVGAGNPGPWNTWA 274 (582)
T ss_dssp EEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBC-CCCSCCEEETTTTEEEEEECCBSSSCGGG
T ss_pred EEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCc-cccCCceEcCCCCEEEEeCCCCCcccCcc
Confidence 54421100 0000000000000 000 0000011 11124567777777765552
Q ss_pred -----------C----CcEEEEEccCCeEEEEEeCCCCC-----ceee-EEEc---cCC---cEEEEECCCCeEEEEEeC
Q 040361 262 -----------D----GTCVFHTLREGRYVRSLCHPSGS-----ALSK-LAAS---RHG---RIVLYGDDDLSLHLFSIN 314 (413)
Q Consensus 262 -----------d----g~i~vwd~~~~~~~~~~~~~~~~-----~v~~-~~~~---~~~---~~l~~~~~d~~i~i~d~~ 314 (413)
| +.|..+|..+|+.+..+...... .+.. +... .+| ..++.++.+|.++++|.+
T Consensus 275 r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~ 354 (582)
T 1flg_A 275 RTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRS 354 (582)
T ss_dssp GSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETT
T ss_pred cccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECC
Confidence 2 58999999999999988642110 1111 2222 456 478889999999999987
Q ss_pred -CceeeeeecCC--------------c--------------------------------eeEEEecCCCCEEEEeC----
Q 040361 315 -GKHLASSESNG--------------R--------------------------------LNCLELSACGQFLVCGG---- 343 (413)
Q Consensus 315 -~~~~~~~~~~~--------------~--------------------------------i~~~~~s~~~~~l~~~~---- 343 (413)
++.+....... + ...++++|+...+++..
T Consensus 355 tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~ 434 (582)
T 1flg_A 355 NGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWK 434 (582)
T ss_dssp TCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEE
T ss_pred CCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcc
Confidence 54443322110 0 11346666655544422
Q ss_pred -----------------------------CCCeEEEEECCCCceEEEecCCCCcEEEEEEccCCeEEEEcCCCeEEEEEe
Q 040361 344 -----------------------------DQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFLAGTKDGCLLVYSI 394 (413)
Q Consensus 344 -----------------------------~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~dg~i~vw~~ 394 (413)
.+|.|..||+.+++.+.+...............++.++.++.||.++.||.
T Consensus 435 ~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~ 514 (582)
T 1flg_A 435 EDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDA 514 (582)
T ss_dssp EEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEET
T ss_pred eeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEEC
Confidence 368899999999998877653321111111223577778999999999999
Q ss_pred cCCcccccccc
Q 040361 395 ENRRTSLPRNV 405 (413)
Q Consensus 395 ~~~~~~~~~~~ 405 (413)
++++......+
T Consensus 515 ~tG~~lW~~~~ 525 (582)
T 1flg_A 515 KSGKELWKFQT 525 (582)
T ss_dssp TTCCEEEEEEC
T ss_pred CCCCEEEEecC
Confidence 99987765443
No 260
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.84 E-value=6.2e-06 Score=71.43 Aligned_cols=227 Identities=10% Similarity=0.030 Sum_probs=142.0
Q ss_pred EEEEeecCCCeEEEEEcCCCc--EEEEeecCCCeEEEEEECCC-CCEEEEccCCCcEEEEEeccccccccccccceeecC
Q 040361 147 FLITCGNWENSFQVIALNDGR--VVQSIRQHRDVVSCVAVTTD-GSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAP 223 (413)
Q Consensus 147 ~l~~~g~~d~~i~i~~~~~~~--~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 223 (413)
+|+++. ...|+.+++.... ....+. ....+.+++|++. +..+++-...+.|..+++.....
T Consensus 6 ~ll~~~--~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~------------- 69 (318)
T 3sov_A 6 LLLYAN--RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES------------- 69 (318)
T ss_dssp EEEEEC--EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSC-------------
T ss_pred EEEEEc--cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCc-------------
Confidence 344433 5689999997653 222222 2245678999885 44455555678888888765531
Q ss_pred CCceeeecCceeeeecCCCCeEEEEEecCC-CEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEE
Q 040361 224 RKDYVIVETPFHILCGHDDIITCLYVSVEL-DIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYG 302 (413)
Q Consensus 224 ~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 302 (413)
....+...-.....+++.+.+ +++++-...+.|.++++... ....+..........++++|.+..|+..
T Consensus 70 ---------~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~-~~~~l~~~~~~~P~giavdp~~g~ly~t 139 (318)
T 3sov_A 70 ---------VQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGS-LRKVLFWQELDQPRAIALDPSSGFMYWT 139 (318)
T ss_dssp ---------CCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECSSCSSEEEEEEEGGGTEEEEE
T ss_pred ---------eEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCC-cEEEEEeCCCCCccEEEEeCCCCEEEEE
Confidence 011122222345678888744 45555556788999998543 3333322223467899999865555554
Q ss_pred C--CCCeEEEEEeCCceeeee--ecCCceeEEEecCCCCEEEEe-CCCCeEEEEECCCCceEEEecCCCCcEEEEEEccC
Q 040361 303 D--DDLSLHLFSINGKHLASS--ESNGRLNCLELSACGQFLVCG-GDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPE 377 (413)
Q Consensus 303 ~--~d~~i~i~d~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~-~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~ 377 (413)
. ..+.|..+++++...... ..-...+.+++++++..|+.+ +..+.|..+|+..................+++..+
T Consensus 140 d~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~~ 219 (318)
T 3sov_A 140 DWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED 219 (318)
T ss_dssp ECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEETT
T ss_pred ecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeCC
Confidence 4 357899999986544332 223467899999976655554 56789999998643332223333456778888766
Q ss_pred CeEEEEcCCCeEEEEEecCCcc
Q 040361 378 ECFLAGTKDGCLLVYSIENRRT 399 (413)
Q Consensus 378 ~~~l~~~~dg~i~vw~~~~~~~ 399 (413)
+.|.+-...+.|..++..+++.
T Consensus 220 ~lywtd~~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 220 ILYWTDWSTHSILACNKYTGEG 241 (318)
T ss_dssp EEEEEETTTTEEEEEETTTCCS
T ss_pred EEEEEecCCCeEEEEECCCCCc
Confidence 5666777788899999876654
No 261
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.79 E-value=1.3e-05 Score=72.64 Aligned_cols=233 Identities=14% Similarity=0.097 Sum_probs=142.2
Q ss_pred eEEEEecCC--CCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCC---Cc-EEEEEecccc
Q 040361 136 CFTTMQTPS--ENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYD---TT-VMVWEVIRAR 209 (413)
Q Consensus 136 ~~~~~~~~~--~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d---g~-i~iw~~~~~~ 209 (413)
...+++.|+ +..|.++-. .+.|+.++..+++...... .......++++++++++++.... .. +...+.....
T Consensus 141 P~gvavd~~s~~g~Lyv~D~-~~~I~~id~~~g~v~~~~~-~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~ 218 (433)
T 4hw6_A 141 IWRMMFDPNSNYDDLYWVGQ-RDAFRHVDFVNQYVDIKTT-NIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF 218 (433)
T ss_dssp CCEEEECTTTTTCEEEEECB-TSCEEEEETTTTEEEEECC-CCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred CceEEEccccCCCEEEEEeC-CCCEEEEECCCCEEEEeec-CCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe
Confidence 456777874 455555443 3899999998777665443 45668899999999955544321 11 2222221111
Q ss_pred ccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEec-CCCEEEEeeCCCcEEEEEccCCeEEEEE-eCCCCCce
Q 040361 210 APEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSV-ELDIVISGSKDGTCVFHTLREGRYVRSL-CHPSGSAL 287 (413)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~~v 287 (413)
. ....+. .......+++++ ++.++++-..++.|+.+|..++.....+ ........
T Consensus 219 -~---------------------~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~ 275 (433)
T 4hw6_A 219 -T---------------------ERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSN 275 (433)
T ss_dssp -C---------------------CEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSC
T ss_pred -e---------------------cccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCc
Confidence 0 001111 123346688899 6666666667788999999877663333 22212223
Q ss_pred eeEEEccCCc-EEEEECCCCeEEEEEeCC--cee----eeeec---------------CCceeEEEe---------cCCC
Q 040361 288 SKLAASRHGR-IVLYGDDDLSLHLFSING--KHL----ASSES---------------NGRLNCLEL---------SACG 336 (413)
Q Consensus 288 ~~~~~~~~~~-~l~~~~~d~~i~i~d~~~--~~~----~~~~~---------------~~~i~~~~~---------s~~~ 336 (413)
..++++|+++ ++++-...+.|+.+++++ ..+ ..... -.....+++ .++|
T Consensus 276 ~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g 355 (433)
T 4hw6_A 276 FHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEY 355 (433)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCE
T ss_pred ccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCC
Confidence 4699999998 455556678999988762 211 11111 123667899 7778
Q ss_pred CEEEEeCCCCeEEEEECCCCceEEEecCC------------------CCcEEEEEEc-cCCeEE-EEcCCCeEEEEEec
Q 040361 337 QFLVCGGDQGQIVVRSMNSLEVVRRYSGV------------------GKIITSLAVT-PEECFL-AGTKDGCLLVYSIE 395 (413)
Q Consensus 337 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~------------------~~~v~~~~~~-~~~~~l-~~~~dg~i~vw~~~ 395 (413)
.++++-..++.|+.++. ++... ++.+. -.....|+++ +++.++ +-..++.|+.++++
T Consensus 356 ~lyvaD~~n~~I~~~~~-~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 356 DFYFCDRDSHTVRVLTP-EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EEEEEETTTTEEEEECT-TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred cEEEEECCCCEEEEECC-CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 88888778889999985 55433 33211 1237889999 667665 45567788888775
No 262
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.78 E-value=1.5e-05 Score=71.18 Aligned_cols=227 Identities=8% Similarity=-0.029 Sum_probs=141.2
Q ss_pred CCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEE-EEccCCCcEEEEEeccccccccccccceeecC
Q 040361 145 ENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSIL-ATGSYDTTVMVWEVIRARAPEKRVRNMQIEAP 223 (413)
Q Consensus 145 ~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 223 (413)
..+|+++. ...|+.+++........+.. ...+..++|++.+..| ++-...+.|..+++....
T Consensus 87 ~~~l~~~~--~~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~-------------- 149 (386)
T 3v65_B 87 EPVLLFAN--RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSN-------------- 149 (386)
T ss_dssp CCEEEEEC--BSCEEEECTTSCCCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC--------------
T ss_pred cceeEeec--CccceeeccCCCcEEEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCC--------------
Confidence 44455433 46788888876665554443 3457899999755554 455567888888876543
Q ss_pred CCceeeecCceeeeecCCCCeEEEEEecCCC-EEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEE
Q 040361 224 RKDYVIVETPFHILCGHDDIITCLYVSVELD-IVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYG 302 (413)
Q Consensus 224 ~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 302 (413)
....+.........+++.+.+. ++++-...+.|.+.++.... ...+..........++++|.+..|+..
T Consensus 150 ---------~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~-~~~l~~~~l~~P~giavdp~~g~ly~t 219 (386)
T 3v65_B 150 ---------VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH-RKVLLWQSLEKPRAIALHPMEGTIYWT 219 (386)
T ss_dssp ---------EEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCS-CEEEECSSCSCEEEEEEETTTTEEEEE
T ss_pred ---------cEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCc-eEEeecCCCCCCcEEEEEcCCCeEEEe
Confidence 1111222223446788887544 44555557788888875433 223322222467899999866555544
Q ss_pred -CCC-CeEEEEEeCCceeeee--ecCCceeEEEecCCCCEEEEe-CCCCeEEEEECCCCceEEEecCCCCcEEEEEEccC
Q 040361 303 -DDD-LSLHLFSINGKHLASS--ESNGRLNCLELSACGQFLVCG-GDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPE 377 (413)
Q Consensus 303 -~~d-~~i~i~d~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~-~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~ 377 (413)
... +.|..+++++...... ..-.....++++|++..|+.+ ...+.|..+|+........+.........+++..+
T Consensus 220 d~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~~~ 299 (386)
T 3v65_B 220 DWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFED 299 (386)
T ss_dssp ECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEETT
T ss_pred ccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEECC
Confidence 444 7899999986554433 233457899999876655554 56678999998754333333333456788888544
Q ss_pred CeEEEEcCCCeEEEEEecCCc
Q 040361 378 ECFLAGTKDGCLLVYSIENRR 398 (413)
Q Consensus 378 ~~~l~~~~dg~i~vw~~~~~~ 398 (413)
..|++-...+.|..++..+++
T Consensus 300 ~ly~td~~~~~V~~~~~~~G~ 320 (386)
T 3v65_B 300 SLYWTDWHTKSINSANKFTGK 320 (386)
T ss_dssp EEEEEETTTTEEEEEETTTCC
T ss_pred EEEEeeCCCCeEEEEECCCCc
Confidence 455677778888888855543
No 263
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.78 E-value=5e-07 Score=74.30 Aligned_cols=169 Identities=8% Similarity=0.036 Sum_probs=111.5
Q ss_pred CCEEEEeecCCCeEEEEEcCCCcEEEEeecCCC-eEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecC
Q 040361 145 ENFLITCGNWENSFQVIALNDGRVVQSIRQHRD-VVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAP 223 (413)
Q Consensus 145 ~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 223 (413)
++.|..+...+|.|+++|+.+++.+..+ -... .--.+++..+ +..+..-.++.+.+||..+.+
T Consensus 64 ~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~-~Ly~ltw~~~~v~V~D~~Tl~-------------- 127 (268)
T 3nok_A 64 QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGE-RLYQLTWTEGLLFTWSGMPPQ-------------- 127 (268)
T ss_dssp TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSS-CEEEEESSSCEEEEEETTTTE--------------
T ss_pred CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCC-EEEEEEccCCEEEEEECCcCc--------------
Confidence 4555555666889999999999998877 3222 1233555432 344445568999999998877
Q ss_pred CCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCC----CceeeEEEccCCcEE
Q 040361 224 RKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSG----SALSKLAASRHGRIV 299 (413)
Q Consensus 224 ~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l 299 (413)
.+..+..- ..-..++ ++++.|+.+..++.|.++|..+.+.+.++..... ..++.+.+. +|.+.
T Consensus 128 ---------~~~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~ly 194 (268)
T 3nok_A 128 ---------RERTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIY 194 (268)
T ss_dssp ---------EEEEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred ---------EEEEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEE
Confidence 34444432 2223333 5677777777789999999999999888764221 134566766 77777
Q ss_pred EEECCCCeEEEEEeCC-ceeeeee--------------cCCceeEEEecCCCCE-EEEe
Q 040361 300 LYGDDDLSLHLFSING-KHLASSE--------------SNGRLNCLELSACGQF-LVCG 342 (413)
Q Consensus 300 ~~~~~d~~i~i~d~~~-~~~~~~~--------------~~~~i~~~~~s~~~~~-l~~~ 342 (413)
+....+..|.+.|.+. +.+.... .....+.++++|+++. +++|
T Consensus 195 anvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 195 ANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 7676788999999984 4333321 1235789999998654 4444
No 264
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.77 E-value=1.3e-05 Score=70.50 Aligned_cols=215 Identities=8% Similarity=-0.050 Sum_probs=135.6
Q ss_pred ceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCC-CCEEEEccCCCcEEEEEeccccccc
Q 040361 134 SQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTD-GSILATGSYDTTVMVWEVIRARAPE 212 (413)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~dg~i~iw~~~~~~~~~ 212 (413)
.....+.|.+.++.|..+-...+.|+.++++.+.....+.........+++.+. ++.+++-...+.|.+.+++...
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~--- 149 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH--- 149 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS---
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc---
Confidence 346778888888888877777889999998776654444433345578888875 4445555667788888876443
Q ss_pred cccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEE-EeeCC-CcEEEEEccCCeEEEEEeCCCCCceeeE
Q 040361 213 KRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVI-SGSKD-GTCVFHTLREGRYVRSLCHPSGSALSKL 290 (413)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~-s~~~d-g~i~vwd~~~~~~~~~~~~~~~~~v~~~ 290 (413)
....+...-.....++++|.+..+. +-... +.|...++.. .....+....-.....+
T Consensus 150 --------------------~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~~~~~~~PnGl 208 (349)
T 3v64_C 150 --------------------RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG-SGRRIIADTHLFWPNGL 208 (349)
T ss_dssp --------------------CEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CSCEESCCSSCSCEEEE
T ss_pred --------------------eEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC-CCcEEEEECCCCCcceE
Confidence 1112222334568899998655544 44344 7788888753 33333322222357889
Q ss_pred EEccCCcEE-EEECCCCeEEEEEeCCceeeee--ecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCC
Q 040361 291 AASRHGRIV-LYGDDDLSLHLFSINGKHLASS--ESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGK 367 (413)
Q Consensus 291 ~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~ 367 (413)
++++++..| ++-...+.|..+|+++...... ........+++ ..+.++++-...+.|..++..+++.+..+.....
T Consensus 209 a~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~ 287 (349)
T 3v64_C 209 TIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLH 287 (349)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEECSCS
T ss_pred EEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEeccCCC
Confidence 999865554 4555678999999986443322 22345677888 3555666666788899998777766655543323
Q ss_pred cEEEEE
Q 040361 368 IITSLA 373 (413)
Q Consensus 368 ~v~~~~ 373 (413)
...+++
T Consensus 288 ~p~gi~ 293 (349)
T 3v64_C 288 FPMDIH 293 (349)
T ss_dssp CCCCEE
T ss_pred CCceEE
Confidence 333343
No 265
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.76 E-value=1.5e-06 Score=81.86 Aligned_cols=132 Identities=12% Similarity=0.123 Sum_probs=85.7
Q ss_pred cCCC---EEEEeeCCCcEEEEEccCCeEEEEEeCCCC------------Cc-----------------------------
Q 040361 251 VELD---IVISGSKDGTCVFHTLREGRYVRSLCHPSG------------SA----------------------------- 286 (413)
Q Consensus 251 ~~~~---~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~------------~~----------------------------- 286 (413)
.+++ .++.++.+|.++++|.++|+.+..+..... .+
T Consensus 331 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~G 410 (582)
T 1flg_A 331 KDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLG 410 (582)
T ss_dssp SSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTC
T ss_pred CCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCcc
Confidence 3563 688899999999999999999877654310 00
Q ss_pred ---eeeEEEccCCcEEEEEC---------------------------------CCCeEEEEEeC-CceeeeeecCCceeE
Q 040361 287 ---LSKLAASRHGRIVLYGD---------------------------------DDLSLHLFSIN-GKHLASSESNGRLNC 329 (413)
Q Consensus 287 ---v~~~~~~~~~~~l~~~~---------------------------------~d~~i~i~d~~-~~~~~~~~~~~~i~~ 329 (413)
-..++++|+..++++.. .+|.|..||+. ++.+-......+...
T Consensus 411 g~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~ 490 (582)
T 1flg_A 411 GKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWA 490 (582)
T ss_dssp SSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCS
T ss_pred ccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcc
Confidence 01345666554444422 25789999987 555544433333322
Q ss_pred EEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcE-EEEEEccCCe-EEE
Q 040361 330 LELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKII-TSLAVTPEEC-FLA 382 (413)
Q Consensus 330 ~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v-~~~~~~~~~~-~l~ 382 (413)
-.+...+.+++.|+.||.++.||.++++.+.+++...... .-+.|..+|+ |++
T Consensus 491 g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~ 545 (582)
T 1flg_A 491 GVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLG 545 (582)
T ss_dssp CCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred cceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEEE
Confidence 2223357788889999999999999999998887543221 1255667775 443
No 266
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.75 E-value=6.4e-05 Score=67.37 Aligned_cols=231 Identities=13% Similarity=0.048 Sum_probs=144.3
Q ss_pred CEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEE-EccCCCcEEEEEeccccccccccccceeecCC
Q 040361 146 NFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILA-TGSYDTTVMVWEVIRARAPEKRVRNMQIEAPR 224 (413)
Q Consensus 146 ~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 224 (413)
.+++++. ...|+..++........+. ....+..++|++.+..|+ +-...+.|..+++.......
T Consensus 84 ~~ll~~~--~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~------------ 148 (400)
T 3p5b_L 84 AYLFFTN--RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS------------ 148 (400)
T ss_dssp CEEEEEE--TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------C------------
T ss_pred ceeEEec--cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCC------------
Confidence 4455544 5789999987766555444 456788999998655554 44556788888876522000
Q ss_pred CceeeecCceeeeecCCCCeEEEEEec-CCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEEC
Q 040361 225 KDYVIVETPFHILCGHDDIITCLYVSV-ELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGD 303 (413)
Q Consensus 225 ~~~~~~~~~~~~~~~h~~~i~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 303 (413)
.....+.........+++.+ .+++.++-...+.|.+.++........+.. .......++++|.+..|+...
T Consensus 149 -------~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~-~~~~P~~iavdp~~g~ly~td 220 (400)
T 3p5b_L 149 -------SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE-NGSKPRAIVVDPVHGFMYWTD 220 (400)
T ss_dssp -------CCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEEC-SSCCEEEEEEETTTTEEEEEE
T ss_pred -------cceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeC-CCCCcceEEEecccCeEEEEe
Confidence 01122222344567899987 444555656678899999865543333332 234578999999665555543
Q ss_pred -C-CCeEEEEEeCCceeeee--ecCCceeEEEecCCCCEEEEe-CCCCeEEEEECCCCceEEEec--CCCCcEEEEEEcc
Q 040361 304 -D-DLSLHLFSINGKHLASS--ESNGRLNCLELSACGQFLVCG-GDQGQIVVRSMNSLEVVRRYS--GVGKIITSLAVTP 376 (413)
Q Consensus 304 -~-d~~i~i~d~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~-~~dg~i~v~d~~~~~~~~~~~--~~~~~v~~~~~~~ 376 (413)
. .+.|...++++...... ..-.....+++++++..|+.+ ...+.|..+|+.......... ..-....++++..
T Consensus 221 ~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~ 300 (400)
T 3p5b_L 221 WGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE 300 (400)
T ss_dssp CSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEET
T ss_pred CCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeC
Confidence 3 47899999987554433 223568899999887766665 456789999986543322222 2234566788855
Q ss_pred CCeEEEEcCCCeEEEEEecCCcc
Q 040361 377 EECFLAGTKDGCLLVYSIENRRT 399 (413)
Q Consensus 377 ~~~~l~~~~dg~i~vw~~~~~~~ 399 (413)
+..|++-...+.|..++..+++.
T Consensus 301 ~~lywtd~~~~~V~~~~~~~G~~ 323 (400)
T 3p5b_L 301 DKVFWTDIINEAIFSANRLTGSD 323 (400)
T ss_dssp TEEEEEESSSCSEEEEESSSCCC
T ss_pred CEEEEecCCCCeEEEEEcCCCCc
Confidence 55566777778888888666543
No 267
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.75 E-value=2.6e-05 Score=67.53 Aligned_cols=205 Identities=12% Similarity=-0.045 Sum_probs=129.3
Q ss_pred ceeEEEEecCCCCEEEEeecCCCeEEEEEcCC----CcEEEEeecCCCeEEEEEECCCCC-EEEEccCCCcEEEEEeccc
Q 040361 134 SQCFTTMQTPSENFLITCGNWENSFQVIALND----GRVVQSIRQHRDVVSCVAVTTDGS-ILATGSYDTTVMVWEVIRA 208 (413)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~----~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~dg~i~iw~~~~~ 208 (413)
.....+.|.+.++.+..+...++.|..+++.. ......+...-.....+++.+.+. ..++-...+.|.+.++...
T Consensus 30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~ 109 (316)
T 1ijq_A 30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 109 (316)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence 34577888888888887777788999999875 222223332334557888886544 4455566788999887643
Q ss_pred cccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeC-C-CcEEEEEccCCeEEEEEeCCCCCc
Q 040361 209 RAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSK-D-GTCVFHTLREGRYVRSLCHPSGSA 286 (413)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~-d-g~i~vwd~~~~~~~~~~~~~~~~~ 286 (413)
. ....+.........++++|.+..+..+.. . +.|...++. |.....+....-..
T Consensus 110 ~-----------------------~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~ 165 (316)
T 1ijq_A 110 K-----------------------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQW 165 (316)
T ss_dssp S-----------------------EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSC
T ss_pred c-----------------------eEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCCC
Confidence 2 11112223345689999986665544443 2 678888874 44333333222346
Q ss_pred eeeEEEccCCcEEE-EECCCCeEEEEEeCCceeeee-e---cCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEE
Q 040361 287 LSKLAASRHGRIVL-YGDDDLSLHLFSINGKHLASS-E---SNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRR 361 (413)
Q Consensus 287 v~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~-~---~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~ 361 (413)
...+++++++..|+ +-...+.|..+|+++...... . .......+++. .+.++++-...+.|..++..+++.+..
T Consensus 166 P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~ 244 (316)
T 1ijq_A 166 PNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNL 244 (316)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEE
T ss_pred ceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEE
Confidence 78999998765554 455667999999986443332 1 12446778885 455666666788999999887776665
Q ss_pred ec
Q 040361 362 YS 363 (413)
Q Consensus 362 ~~ 363 (413)
+.
T Consensus 245 i~ 246 (316)
T 1ijq_A 245 LA 246 (316)
T ss_dssp EE
T ss_pred Ee
Confidence 54
No 268
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.74 E-value=2.4e-06 Score=70.31 Aligned_cols=157 Identities=13% Similarity=0.106 Sum_probs=110.2
Q ss_pred cCCCCe--EEEEEecCCCEEEEeeCCC--cEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeC
Q 040361 239 GHDDII--TCLYVSVELDIVISGSKDG--TCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSIN 314 (413)
Q Consensus 239 ~h~~~i--~~~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~ 314 (413)
.|...- ..+.|+ ++.++.+.+.+| .|+.+|+.+++.+.++..+....-..++.. .+++.+..-.++.+.+||.+
T Consensus 38 phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~-g~~ly~ltw~~~~v~v~D~~ 115 (262)
T 3nol_A 38 PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW-KDKIVGLTWKNGLGFVWNIR 115 (262)
T ss_dssp ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSEEEEEETT
T ss_pred cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe-CCEEEEEEeeCCEEEEEECc
Confidence 455443 688888 667777777776 899999999999998876532222234443 23444555568899999998
Q ss_pred C-ceeeeeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCC--C---CcEEEEEEccCCeEEE-EcCCC
Q 040361 315 G-KHLASSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGV--G---KIITSLAVTPEECFLA-GTKDG 387 (413)
Q Consensus 315 ~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~--~---~~v~~~~~~~~~~~l~-~~~dg 387 (413)
. +.+....... ....++++++.|+.++.++.|.++|..+.+.+.++... . ..++.+.|. +|++.+ .-.++
T Consensus 116 t~~~~~ti~~~~--eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~ 192 (262)
T 3nol_A 116 NLRQVRSFNYDG--EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTN 192 (262)
T ss_dssp TCCEEEEEECSS--CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSS
T ss_pred cCcEEEEEECCC--CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCC
Confidence 4 4444444433 33444568888888777889999999999988887642 1 345668887 777666 44678
Q ss_pred eEEEEEecCCccc
Q 040361 388 CLLVYSIENRRTS 400 (413)
Q Consensus 388 ~i~vw~~~~~~~~ 400 (413)
.|.+.|.++++..
T Consensus 193 ~I~vIDp~tG~V~ 205 (262)
T 3nol_A 193 KIVRIDPETGKVT 205 (262)
T ss_dssp EEEEECTTTCBEE
T ss_pred eEEEEECCCCcEE
Confidence 8999999988754
No 269
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.74 E-value=2.6e-06 Score=74.25 Aligned_cols=210 Identities=10% Similarity=-0.036 Sum_probs=120.1
Q ss_pred eEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCce-eeecCceeeeecCCCCeEEEEEec-CCCE
Q 040361 178 VVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDY-VIVETPFHILCGHDDIITCLYVSV-ELDI 255 (413)
Q Consensus 178 ~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~h~~~i~~~~~~~-~~~~ 255 (413)
...+++|+++++.++++..++.|..|+..++.... +......... ................+..+++.+ +++
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~- 93 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVD-----FAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ- 93 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEE-----EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEE-----EecccccccccccccccchhccccCCCCceEEEcCCCCc-
Confidence 44578899999878888888999999876543100 0000000000 000000000000113468899997 554
Q ss_pred EEEeeCCCcEEEEEccCCeEEEEEeC----CCCCceeeEEEcc-CCcEEEEECC-----------------CCeEEEEEe
Q 040361 256 VISGSKDGTCVFHTLREGRYVRSLCH----PSGSALSKLAASR-HGRIVLYGDD-----------------DLSLHLFSI 313 (413)
Q Consensus 256 l~s~~~dg~i~vwd~~~~~~~~~~~~----~~~~~v~~~~~~~-~~~~l~~~~~-----------------d~~i~i~d~ 313 (413)
|+.+...+.|..+|..++.. ..+.. ........+++.+ +|++.++... ++.|..||.
T Consensus 94 l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~ 172 (322)
T 2fp8_A 94 LYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDP 172 (322)
T ss_dssp EEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEET
T ss_pred EEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeC
Confidence 45554455588888765532 22221 1112467899999 9987776543 367888988
Q ss_pred CCceeee-eecCCceeEEEecCCCCEEEEe-CCCCeEEEEECCCCc--eEEEecCCCCcEEEEEEccCCeEEEEc-C---
Q 040361 314 NGKHLAS-SESNGRLNCLELSACGQFLVCG-GDQGQIVVRSMNSLE--VVRRYSGVGKIITSLAVTPEECFLAGT-K--- 385 (413)
Q Consensus 314 ~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~v~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~-~--- 385 (413)
.+..+.. .........++++|+|++|+++ ..++.|.+|++.... ....+....+ ...+++.++|.+.++. .
T Consensus 173 ~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~ 251 (322)
T 2fp8_A 173 STKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELD 251 (322)
T ss_dssp TTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETT
T ss_pred CCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCccc
Confidence 7544332 2222446789999999866655 566899999987421 1112211223 7889999998766533 2
Q ss_pred -------CCeEEEEEec
Q 040361 386 -------DGCLLVYSIE 395 (413)
Q Consensus 386 -------dg~i~vw~~~ 395 (413)
.+.|..++.+
T Consensus 252 ~~~~~~~~~~v~~~d~~ 268 (322)
T 2fp8_A 252 GNMHGRVDPKGIKFDEF 268 (322)
T ss_dssp SSTTSCEEEEEEEECTT
T ss_pred ccccCCCccEEEEECCC
Confidence 3556667653
No 270
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.71 E-value=4.5e-05 Score=74.99 Aligned_cols=237 Identities=14% Similarity=0.131 Sum_probs=151.3
Q ss_pred cceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEee---------cCCCeEEEEEECCCCCEEEEccCCCcEEEE
Q 040361 133 GSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIR---------QHRDVVSCVAVTTDGSILATGSYDTTVMVW 203 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~---------~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw 203 (413)
...+.++....+|...+ |..++-|..++..++....... .....|.++...+++. |..|+.++-|..|
T Consensus 312 ~~~v~~i~~D~~g~lWi--gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~ 388 (781)
T 3v9f_A 312 NASARYIFQDSFNNIWI--GTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVF 388 (781)
T ss_dssp SSCEEEEEECSSCCEEE--EEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEE
T ss_pred CCeEEEEEEeCCCCEEE--EecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEE
Confidence 34577777777887666 4446778888876655433211 1345799999988776 5556666668888
Q ss_pred EeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeC--
Q 040361 204 EVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCH-- 281 (413)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-- 281 (413)
+..++..... ..........|.++...+++.+.+ |+.++-+..+|..+++... +..
T Consensus 389 ~~~~~~~~~~--------------------~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~-~~~~~ 446 (781)
T 3v9f_A 389 ENGKRVAIYN--------------------KENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQI-IELEK 446 (781)
T ss_dssp ETTEEEEECC-------------------------CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEE-CCSTT
T ss_pred ECCCCeEEEc--------------------cCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEE-eccCC
Confidence 8765431000 000012346788888887776554 6666778899987776433 321
Q ss_pred CCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCceeeeee--c-----CCceeEEEecCCCCEEEEeCCCCeEEEEECC
Q 040361 282 PSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKHLASSE--S-----NGRLNCLELSACGQFLVCGGDQGQIVVRSMN 354 (413)
Q Consensus 282 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~-----~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~ 354 (413)
.....|.++...+++.+.+... +-|..||..+....... . ...|.++...++|++.+....+| +..||..
T Consensus 447 ~~~~~v~~i~~d~~g~lwigt~--~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~ 523 (781)
T 3v9f_A 447 NELLDVRVFYEDKNKKIWIGTH--AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPD 523 (781)
T ss_dssp TCCCCEEEEEECTTSEEEEEET--TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTT
T ss_pred CCCCeEEEEEECCCCCEEEEEC--CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCC
Confidence 1234688888888887665544 56889998754433321 1 35788999998888665544344 7778887
Q ss_pred CCceEEEecC----CCCcEEEEEEccCCeEEEEcCCCeEEEEEecCCc
Q 040361 355 SLEVVRRYSG----VGKIITSLAVTPEECFLAGTKDGCLLVYSIENRR 398 (413)
Q Consensus 355 ~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~dg~i~vw~~~~~~ 398 (413)
+++.. .+.. ....|.++...++|.+..++.+|-|..|+.++++
T Consensus 524 ~~~~~-~~~~~~~l~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~~~ 570 (781)
T 3v9f_A 524 MQLVR-KFNQYEGFCSNTINQIYRSSKGQMWLATGEGLVCFPSARNFD 570 (781)
T ss_dssp CCEEE-EECTTTTCSCSCEEEEEECTTSCEEEEETTEEEEESCTTTCC
T ss_pred CCeEE-EccCCCCCCCCeeEEEEECCCCCEEEEECCCceEEECCCCCc
Confidence 65433 3321 2457899999999988877777765888876653
No 271
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.71 E-value=1.8e-05 Score=70.61 Aligned_cols=217 Identities=8% Similarity=-0.064 Sum_probs=137.0
Q ss_pred cceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCC-EEEEccCCCcEEEEEecccccc
Q 040361 133 GSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGS-ILATGSYDTTVMVWEVIRARAP 211 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~dg~i~iw~~~~~~~~ 211 (413)
......+.|.+.++.|..+-...+.|+.++.+.+.....+.........+++.+.+. ++++-...+.|.+.+++...
T Consensus 115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~-- 192 (386)
T 3v65_B 115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH-- 192 (386)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCS--
T ss_pred CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCc--
Confidence 345678888988888887777788999999876655444443334556788887544 44555556778777765432
Q ss_pred ccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEee-CC-CcEEEEEccCCeEEEEEeCCCCCceee
Q 040361 212 EKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGS-KD-GTCVFHTLREGRYVRSLCHPSGSALSK 289 (413)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~-~d-g~i~vwd~~~~~~~~~~~~~~~~~v~~ 289 (413)
....+.........+++.|.+..|.... .. +.|...++... ....+....-.....
T Consensus 193 ---------------------~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~~~~~~PnG 250 (386)
T 3v65_B 193 ---------------------RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-GRRIIADTHLFWPNG 250 (386)
T ss_dssp ---------------------CEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEEEECSSCSCEEE
T ss_pred ---------------------eEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC-CcEEEEECCCCCeee
Confidence 1112222334568899998766555443 34 67888887533 333332222235788
Q ss_pred EEEccCCcE-EEEECCCCeEEEEEeCCceeeee--ecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCC
Q 040361 290 LAASRHGRI-VLYGDDDLSLHLFSINGKHLASS--ESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVG 366 (413)
Q Consensus 290 ~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~ 366 (413)
+++++++.. .++-...+.|..+|+++...... ........+++ ..+.++++....+.|..++..+++.+..+....
T Consensus 251 lavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~~ 329 (386)
T 3v65_B 251 LTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIRNKL 329 (386)
T ss_dssp EEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEECSC
T ss_pred EEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEccCC
Confidence 999976554 45556678899999986443322 22345677888 345566666778899999977777766665433
Q ss_pred CcEEEEEE
Q 040361 367 KIITSLAV 374 (413)
Q Consensus 367 ~~v~~~~~ 374 (413)
.....+++
T Consensus 330 ~~p~gi~v 337 (386)
T 3v65_B 330 HFPMDIHT 337 (386)
T ss_dssp SCCCCEEE
T ss_pred CCCceEEE
Confidence 34444544
No 272
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.70 E-value=3.5e-06 Score=79.28 Aligned_cols=203 Identities=9% Similarity=0.075 Sum_probs=125.4
Q ss_pred CCeEEEEEcCCCcEEEEeecCCCe-------------------------------------E-EEEEECCCCCEEEEccC
Q 040361 155 ENSFQVIALNDGRVVQSIRQHRDV-------------------------------------V-SCVAVTTDGSILATGSY 196 (413)
Q Consensus 155 d~~i~i~~~~~~~~~~~~~~h~~~-------------------------------------v-~~~~~~~~~~~l~s~s~ 196 (413)
++.|+.+|..+|+.+..+...... + ..+++.++...++.+..
T Consensus 181 ~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g 260 (599)
T 1w6s_A 181 RGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTG 260 (599)
T ss_dssp CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECC
T ss_pred CCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCC
Confidence 789999999999998877542211 0 13455566677777665
Q ss_pred C----------------CcEEEEEeccccccccccccceeecCCCceeeecCceeeee--cC--------CCCeEEEEEe
Q 040361 197 D----------------TTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILC--GH--------DDIITCLYVS 250 (413)
Q Consensus 197 d----------------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h--------~~~i~~~~~~ 250 (413)
+ +.|..+|.++++.. -.++ .| ..++. +...
T Consensus 261 ~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~-----------------------W~~q~~~~d~wd~d~~~~p~l-~d~~ 316 (599)
T 1w6s_A 261 NPAPWNETMRPGDNKWTMTIFGRDADTGEAK-----------------------FGYQKTPHDEWDYAGVNVMML-SEQK 316 (599)
T ss_dssp CCSCSCGGGSCSCCTTSSEEEEEETTTCCEE-----------------------EEEESSTTCSSCCCCCCCCEE-EEEE
T ss_pred CCccccCcccCCCccccceEEEEeCCCCcee-----------------------eEeecCCCccccccCCCccEE-Eecc
Confidence 4 37888888887722 2221 12 11221 2222
Q ss_pred -cCC---CEEEEeeCCCcEEEEEccCCeEEEEEeCCC------------CCce--------------------------e
Q 040361 251 -VEL---DIVISGSKDGTCVFHTLREGRYVRSLCHPS------------GSAL--------------------------S 288 (413)
Q Consensus 251 -~~~---~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~------------~~~v--------------------------~ 288 (413)
.++ ..++.++.+|.+++.|.++|+.+....... +.++ .
T Consensus 317 ~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~ 396 (599)
T 1w6s_A 317 DKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQG 396 (599)
T ss_dssp CTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSC
T ss_pred ccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCC
Confidence 456 467778999999999999999987765321 1111 2
Q ss_pred eEEEccCCcEEEEE---------------------------------C------CCCeEEEEEeC-CceeeeeecCCcee
Q 040361 289 KLAASRHGRIVLYG---------------------------------D------DDLSLHLFSIN-GKHLASSESNGRLN 328 (413)
Q Consensus 289 ~~~~~~~~~~l~~~---------------------------------~------~d~~i~i~d~~-~~~~~~~~~~~~i~ 328 (413)
.++++|+..++++. + ..|.|..||+. ++.+-......+..
T Consensus 397 ~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~ 476 (599)
T 1w6s_A 397 HDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVW 476 (599)
T ss_dssp BCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCC
T ss_pred CccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCcc
Confidence 45666665555442 1 34678888887 44444443333222
Q ss_pred EEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCc-EEEEEEccCCe-EE
Q 040361 329 CLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKI-ITSLAVTPEEC-FL 381 (413)
Q Consensus 329 ~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~-~l 381 (413)
.-.+...+.+++.++.||.++.||.++++.+.+++..... ..-+.+..+|+ |+
T Consensus 477 ~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv 531 (599)
T 1w6s_A 477 GGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYV 531 (599)
T ss_dssp SBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred CcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEEE
Confidence 2223335778888999999999999999999888643221 12245556774 44
No 273
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.70 E-value=3.4e-05 Score=63.83 Aligned_cols=198 Identities=13% Similarity=0.138 Sum_probs=128.9
Q ss_pred EeecCCCeEEEEEECCCCCEEEE-ccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeee-cCCCCeEEEE
Q 040361 171 SIRQHRDVVSCVAVTTDGSILAT-GSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILC-GHDDIITCLY 248 (413)
Q Consensus 171 ~~~~h~~~v~~~~~~~~~~~l~s-~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~i~~~~ 248 (413)
.+.+-.+.+..++|+|++..|++ ...++.|...|.. ++ .+..+. +-......++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~-----------------------v~~~i~l~g~~D~EGIa 76 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GD-----------------------LIRTIPLDFVKDLETIE 76 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CC-----------------------EEEEEECSSCSSEEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CC-----------------------EEEEEecCCCCChHHeE
Confidence 44555568999999998766654 6667778777775 43 222221 1124567888
Q ss_pred EecCCCEEEEeeCCCcEEEEEccCCeE---EEEEe-----CCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCC----c
Q 040361 249 VSVELDIVISGSKDGTCVFHTLREGRY---VRSLC-----HPSGSALSKLAASRHGRIVLYGDDDLSLHLFSING----K 316 (413)
Q Consensus 249 ~~~~~~~l~s~~~dg~i~vwd~~~~~~---~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~----~ 316 (413)
+.+++.++++.-.++.+.++++..... +.... .+.+.....++++|.++.|+++.......+|.+++ .
T Consensus 77 ~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~ 156 (255)
T 3qqz_A 77 YIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSN 156 (255)
T ss_dssp ECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSS
T ss_pred EeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCC
Confidence 888887777766778899998765432 22332 12344568999999987777766555555555542 1
Q ss_pred eeeee--------ecCCceeEEEecCC-CCEEEEeCCCCeEEEEECCCCceEEEecCCC---------CcEEEEEEccCC
Q 040361 317 HLASS--------ESNGRLNCLELSAC-GQFLVCGGDQGQIVVRSMNSLEVVRRYSGVG---------KIITSLAVTPEE 378 (413)
Q Consensus 317 ~~~~~--------~~~~~i~~~~~s~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~---------~~v~~~~~~~~~ 378 (413)
.+... .....+..++++|. +++++....+..+.++|.. ++.+..+.-.. ...-.|+|.++|
T Consensus 157 ~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G 235 (255)
T 3qqz_A 157 ELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASG 235 (255)
T ss_dssp CCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTC
T ss_pred ceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCC
Confidence 11111 12345789999986 5677777888899999976 55655543221 257899999999
Q ss_pred eEEEEcCCCeEEEEE
Q 040361 379 CFLAGTKDGCLLVYS 393 (413)
Q Consensus 379 ~~l~~~~dg~i~vw~ 393 (413)
.+...++.+.++.+.
T Consensus 236 ~lyIvsE~n~~y~f~ 250 (255)
T 3qqz_A 236 NIYIVSEPNRFYRFT 250 (255)
T ss_dssp CEEEEETTTEEEEEE
T ss_pred CEEEEcCCceEEEEE
Confidence 877667777555554
No 274
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.69 E-value=6.6e-05 Score=67.31 Aligned_cols=217 Identities=10% Similarity=-0.069 Sum_probs=137.4
Q ss_pred cceeEEEEecCCCCEEEEeecCCCeEEEEEcCCC----cEEEEeecCCCeEEEEEECC-CCCEEEEccCCCcEEEEEecc
Q 040361 133 GSQCFTTMQTPSENFLITCGNWENSFQVIALNDG----RVVQSIRQHRDVVSCVAVTT-DGSILATGSYDTTVMVWEVIR 207 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~----~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~dg~i~iw~~~~ 207 (413)
...+..+.|.+.++.+..+-...+.|+.+++... .....+.........+++.+ .+++.++-...+.|.+.+++.
T Consensus 111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g 190 (400)
T 3p5b_L 111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 190 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence 3567788899888888777766789999988652 23333443445678899987 455555556678888888765
Q ss_pred ccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEee--CCCcEEEEEccCCeEEEEEeCCCCC
Q 040361 208 ARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGS--KDGTCVFHTLREGRYVRSLCHPSGS 285 (413)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~ 285 (413)
.. ....+...-.....+++.|.+..|.... ..+.|...++.. .....+....-.
T Consensus 191 ~~-----------------------~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG-~~~~~~~~~~l~ 246 (400)
T 3p5b_L 191 VK-----------------------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTENIQ 246 (400)
T ss_dssp CS-----------------------EEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTS-CSCEEEECSSCS
T ss_pred Cc-----------------------eEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCC-CccEEEEECCCC
Confidence 43 1122222334568999999666555444 246888888853 333333222224
Q ss_pred ceeeEEEccCCcEEEEE-CCCCeEEEEEeCCceeeeee----cCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEE
Q 040361 286 ALSKLAASRHGRIVLYG-DDDLSLHLFSINGKHLASSE----SNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVR 360 (413)
Q Consensus 286 ~v~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~----~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~ 360 (413)
....|++++++..|+.+ ...+.|..+|+++....... .-.....+++. .+.++++-...+.|..+|..+++.+.
T Consensus 247 ~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~ 325 (400)
T 3p5b_L 247 WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVN 325 (400)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCE
T ss_pred ceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceE
Confidence 67899999876665554 56779999999865443321 12345677773 34455666677889999988887777
Q ss_pred EecCCCCcEEEEEE
Q 040361 361 RYSGVGKIITSLAV 374 (413)
Q Consensus 361 ~~~~~~~~v~~~~~ 374 (413)
.+........++..
T Consensus 326 ~i~~~~~~p~~i~v 339 (400)
T 3p5b_L 326 LLAENLLSPEDMVL 339 (400)
T ss_dssp EEECSCSCEEEEEE
T ss_pred EEecCCCCCceEEE
Confidence 76644444555554
No 275
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.69 E-value=9.9e-05 Score=72.58 Aligned_cols=244 Identities=10% Similarity=0.096 Sum_probs=148.2
Q ss_pred cceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEee--------------cCCCeEEEEEECCCCCEEEEccCCC
Q 040361 133 GSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIR--------------QHRDVVSCVAVTTDGSILATGSYDT 198 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~--------------~h~~~v~~~~~~~~~~~l~s~s~dg 198 (413)
...+.++...++|...+ |...+-|.+++..+++...... .....|.++...++|. |..|+.++
T Consensus 257 ~~~i~~i~~d~~g~lWi--gt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~ 333 (781)
T 3v9f_A 257 SSYIFSIKQLKDNKLWI--ATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGG 333 (781)
T ss_dssp CCCEEEEEECTTSEEEE--EESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSS
T ss_pred CceEEEEEECCCCCEEE--EeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCC
Confidence 34577777777777666 4434678889987765432211 1346799999988875 56677667
Q ss_pred cEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEE
Q 040361 199 TVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRS 278 (413)
Q Consensus 199 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 278 (413)
-|..++.......... .... ....-......|.++...+++.+ ..|+.++-|..||..++....-
T Consensus 334 Gl~~~~~~~~~~~~~~-----~~~~---------~~~~~~l~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~~ 398 (781)
T 3v9f_A 334 GINFISNAPPTFHTWS-----YSPT---------QMNESSLSNKVVSSVCDDGQGKL-WIGTDGGGINVFENGKRVAIYN 398 (781)
T ss_dssp CEEEECSSCCSCEEEC------------------CCCSSCCSSSCEEEEEECTTSCE-EEEEBSSCEEEEETTEEEEECC
T ss_pred eEEEeCCCCCcceeec-----cCcc---------ccccCCCCCcceEEEEEcCCCCE-EEEeCCCcEEEEECCCCeEEEc
Confidence 7888887654310000 0000 00000012356888888877764 4566666788899765433221
Q ss_pred Ee--CCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCceeeeee----cCCceeEEEecCCCCEEEEeCCCCeEEEEE
Q 040361 279 LC--HPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKHLASSE----SNGRLNCLELSACGQFLVCGGDQGQIVVRS 352 (413)
Q Consensus 279 ~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~----~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d 352 (413)
.. ......|.++...+++.+.+ |+.++-|..+|.++....... ....|.++...++|.+.+. +. +-|..||
T Consensus 399 ~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwig-t~-~Gl~~~~ 475 (781)
T 3v9f_A 399 KENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIG-TH-AGVFVID 475 (781)
T ss_dssp -----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEE-ET-TEEEEEE
T ss_pred cCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEE-EC-CceEEEe
Confidence 10 11234688888887777555 555567889998755554432 2457888888888765554 44 5688999
Q ss_pred CCCCceEEEecCC-----CCcEEEEEEccCCeEEEEcCCCeEEEEEecCC
Q 040361 353 MNSLEVVRRYSGV-----GKIITSLAVTPEECFLAGTKDGCLLVYSIENR 397 (413)
Q Consensus 353 ~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~dg~i~vw~~~~~ 397 (413)
..+++........ ...|.++...++|.+..|+.++-|..|+.+++
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~ 525 (781)
T 3v9f_A 476 LASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQ 525 (781)
T ss_dssp SSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCC
T ss_pred CCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCC
Confidence 8876544322211 45799999999998888777555777887654
No 276
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.65 E-value=3.4e-05 Score=66.50 Aligned_cols=200 Identities=13% Similarity=0.103 Sum_probs=122.2
Q ss_pred cEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEE
Q 040361 167 RVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITC 246 (413)
Q Consensus 167 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 246 (413)
+.+..+... .....++|+++++.+++-..++.|..||..... .. ..........
T Consensus 23 ~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~------------------------~~-~~~~~~~p~g 76 (306)
T 2p4o_A 23 KIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ------------------------QI-HATVEGKVSG 76 (306)
T ss_dssp EEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE------------------------EE-EEECSSEEEE
T ss_pred eEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCce------------------------EE-EEeCCCCcee
Confidence 344444322 456789999999877777678889888865432 11 1122345788
Q ss_pred EEEecCCCEEEEeeCC-C-cEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCc--eeeee-
Q 040361 247 LYVSVELDIVISGSKD-G-TCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGK--HLASS- 321 (413)
Q Consensus 247 ~~~~~~~~~l~s~~~d-g-~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~- 321 (413)
+++.++++++++.... + .|..+|..+++...............++..+++..+++-..++.|+.+|..+. .+...
T Consensus 77 ia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~ 156 (306)
T 2p4o_A 77 LAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEH 156 (306)
T ss_dssp EEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred EEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEEC
Confidence 9999999866655432 2 47777877777544333322223455565666666666666889999998642 22110
Q ss_pred ---------ecCCceeEEEecCCCCEEEE-eCCCCeEEEEECCC-Cce--EEEecCCCCcEEEEEEccCCeEEE-EcCCC
Q 040361 322 ---------ESNGRLNCLELSACGQFLVC-GGDQGQIVVRSMNS-LEV--VRRYSGVGKIITSLAVTPEECFLA-GTKDG 387 (413)
Q Consensus 322 ---------~~~~~i~~~~~s~~~~~l~~-~~~dg~i~v~d~~~-~~~--~~~~~~~~~~v~~~~~~~~~~~l~-~~~dg 387 (413)
..-...+.+ ++++++|++ -...+.|..|++.. ++. ...+.. ......++++++|++.+ ....+
T Consensus 157 ~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~ 233 (306)
T 2p4o_A 157 PMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYN 233 (306)
T ss_dssp GGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTC
T ss_pred CccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCC
Confidence 011234455 788876655 45678999999874 322 112211 13456689999987665 44567
Q ss_pred eEEEEEec
Q 040361 388 CLLVYSIE 395 (413)
Q Consensus 388 ~i~vw~~~ 395 (413)
.|.+++..
T Consensus 234 ~V~~~~~~ 241 (306)
T 2p4o_A 234 SVVRIAPD 241 (306)
T ss_dssp CEEEECTT
T ss_pred eEEEECCC
Confidence 89999865
No 277
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.63 E-value=9.2e-05 Score=67.32 Aligned_cols=243 Identities=9% Similarity=0.060 Sum_probs=147.9
Q ss_pred eeEEEEecC-CCCEEEEeecCCCeEEEEEcCCCcEEEEeecC---CCeEEEEEE-------CCCCCEEEEccCCC-c---
Q 040361 135 QCFTTMQTP-SENFLITCGNWENSFQVIALNDGRVVQSIRQH---RDVVSCVAV-------TTDGSILATGSYDT-T--- 199 (413)
Q Consensus 135 ~~~~~~~~~-~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h---~~~v~~~~~-------~~~~~~l~s~s~dg-~--- 199 (413)
....+++.| ++..|+++-...+.|++.|..++.+...+..- ......++| ++++++|+.+...+ .
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 345677888 46666666554568999999887776655432 246899999 99999666665543 2
Q ss_pred ---EEEEEecc-ccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEec-CCCEEEEeeCCCcEEEEEcc---
Q 040361 200 ---VMVWEVIR-ARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSV-ELDIVISGSKDGTCVFHTLR--- 271 (413)
Q Consensus 200 ---i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~-~~~~l~s~~~dg~i~vwd~~--- 271 (413)
|.+.+... +...... ....+... .....++++| ++.++++-..++.|..+|+.
T Consensus 220 ~~~V~~i~r~~~G~~~~~~------------------~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~ 280 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRS------------------DIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYF 280 (496)
T ss_dssp EEEEEEEECCTTSCCSTTS------------------CEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHH
T ss_pred CceEEEEecCCCCceeecc------------------cceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEeccccc
Confidence 44444222 1100000 00111111 1234678899 45556666678889999997
Q ss_pred ----CCeE-----------EEE-EeCCCCCceeeEEEccCCcE-EEEECCCCeEEEEEeCCc--ee----eeeec---C-
Q 040361 272 ----EGRY-----------VRS-LCHPSGSALSKLAASRHGRI-VLYGDDDLSLHLFSINGK--HL----ASSES---N- 324 (413)
Q Consensus 272 ----~~~~-----------~~~-~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~--~~----~~~~~---~- 324 (413)
++.. ... +..+.......++++|++++ +++-...+.|+.++.++. .+ ..... .
T Consensus 281 ~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G 360 (496)
T 3kya_A 281 KTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSG 360 (496)
T ss_dssp HHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCC
T ss_pred ccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCc
Confidence 5543 112 22332345678999999995 555567789999877642 21 11111 0
Q ss_pred -----------Ccee-EEEec-------CCCCEEEEeCCCCeEEEEECCCCceEEEecCC--------------------
Q 040361 325 -----------GRLN-CLELS-------ACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGV-------------------- 365 (413)
Q Consensus 325 -----------~~i~-~~~~s-------~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-------------------- 365 (413)
.... .++.. ++|.++++-..++.|+.++ .++. +.++-+.
T Consensus 361 ~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~ 438 (496)
T 3kya_A 361 YRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLR 438 (496)
T ss_dssp CBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETT
T ss_pred ccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCch
Confidence 1234 45554 4667777777888999998 4553 3333221
Q ss_pred ----CCcEEEEEEccC-CeEE-EEcCCCeEEEEEecCCc
Q 040361 366 ----GKIITSLAVTPE-ECFL-AGTKDGCLLVYSIENRR 398 (413)
Q Consensus 366 ----~~~v~~~~~~~~-~~~l-~~~~dg~i~vw~~~~~~ 398 (413)
-.....|+++++ +.++ +=..+..|+.++++...
T Consensus 439 ~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~ 477 (496)
T 3kya_A 439 EVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEE 477 (496)
T ss_dssp TTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC
T ss_pred hhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCc
Confidence 124788999996 7655 56677899999997654
No 278
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.63 E-value=5.4e-05 Score=65.50 Aligned_cols=215 Identities=8% Similarity=-0.093 Sum_probs=134.6
Q ss_pred ceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcE-EEEeecCCCeEEEEEECCC-CCEEEEccCCCcEEEEEecccccc
Q 040361 134 SQCFTTMQTPSENFLITCGNWENSFQVIALNDGRV-VQSIRQHRDVVSCVAVTTD-GSILATGSYDTTVMVWEVIRARAP 211 (413)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~-~~~~~~h~~~v~~~~~~~~-~~~l~s~s~dg~i~iw~~~~~~~~ 211 (413)
.....+.|.+.++.+..+-...+.|..++.+.+.. ...+...-.....+++.+. ++.+++-...+.|.+++++...
T Consensus 35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~-- 112 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL-- 112 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS--
T ss_pred CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCc--
Confidence 45677888888788877777788999999876532 1222222344567888864 4555555667889888876543
Q ss_pred ccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEee--CCCcEEEEEccCCeEEEEEeCCCCCceee
Q 040361 212 EKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGS--KDGTCVFHTLREGRYVRSLCHPSGSALSK 289 (413)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~v~~ 289 (413)
....+.........+++.|.+..|..+. ..+.|...++. |.....+....-...+.
T Consensus 113 ---------------------~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~~~~~~~l~~Png 170 (318)
T 3sov_A 113 ---------------------RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIIINSEIYWPNG 170 (318)
T ss_dssp ---------------------CEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT-SCSCEEEECSSCSCEEE
T ss_pred ---------------------EEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC-CCCeEEEEECCCCCccE
Confidence 1111223334568899998766555544 35778888875 33333332222235688
Q ss_pred EEEccCCcEE-EEECCCCeEEEEEeCCceeeee--ecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCC
Q 040361 290 LAASRHGRIV-LYGDDDLSLHLFSINGKHLASS--ESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVG 366 (413)
Q Consensus 290 ~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~ 366 (413)
+++++++..| ++-...+.|..+|+++...... ........+++. .+.++++-...+.|..++..+++....+....
T Consensus 171 lavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~ 249 (318)
T 3sov_A 171 LTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF-EDILYWTDWSTHSILACNKYTGEGLREIHSDI 249 (318)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEECCC
T ss_pred EEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe-CCEEEEEecCCCeEEEEECCCCCceEEEeCCC
Confidence 9999865555 4556678999999986443332 234456777775 34455566677899999998887666654332
Q ss_pred CcEEEEE
Q 040361 367 KIITSLA 373 (413)
Q Consensus 367 ~~v~~~~ 373 (413)
..+.+++
T Consensus 250 ~~P~~i~ 256 (318)
T 3sov_A 250 FSPMDIH 256 (318)
T ss_dssp SSCCCEE
T ss_pred CCCcEEE
Confidence 3333444
No 279
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.62 E-value=5.1e-06 Score=81.12 Aligned_cols=239 Identities=10% Similarity=0.101 Sum_probs=129.5
Q ss_pred eeEEEEec-CCCCEEEEeecCCC----eEEEEEcCCC-cEEE-EeecCCCeEEEEEECCCCCEEEEccCCC-----cEEE
Q 040361 135 QCFTTMQT-PSENFLITCGNWEN----SFQVIALNDG-RVVQ-SIRQHRDVVSCVAVTTDGSILATGSYDT-----TVMV 202 (413)
Q Consensus 135 ~~~~~~~~-~~~~~l~~~g~~d~----~i~i~~~~~~-~~~~-~~~~h~~~v~~~~~~~~~~~l~s~s~dg-----~i~i 202 (413)
......++ |+|+.++.+...+| .|+++|+.++ +.+. .+. .....++|+||++.|+....|. .|..
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 34567899 99999988765444 5999999988 6321 111 1234688999998888776652 4666
Q ss_pred EEeccccccccccccceeecCCCceeeecCceeeee-cCCCCeEEEEEecCCCEEEEeeC---CCcEEEEEccCCe-EE-
Q 040361 203 WEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILC-GHDDIITCLYVSVELDIVISGSK---DGTCVFHTLREGR-YV- 276 (413)
Q Consensus 203 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~i~~~~~~~~~~~l~s~~~---dg~i~vwd~~~~~-~~- 276 (413)
+++.++... ....+. ........+.|+||+++|+..+. ...|.++|+.++. ..
T Consensus 252 ~~lgt~~~~---------------------~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~ 310 (751)
T 2xe4_A 252 HVMGKLQSE---------------------DVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNT 310 (751)
T ss_dssp EETTSCGGG---------------------CEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCC
T ss_pred EECCCCchh---------------------cEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCce
Confidence 666554310 011222 22234567899999998876553 3468888987652 12
Q ss_pred -EEEeCCCCCceeeEEEccCCcEEEEECCC----CeEEEEEeCC-ce-ee-eeecCC--ceeEEEecCCCCEEEEeCCCC
Q 040361 277 -RSLCHPSGSALSKLAASRHGRIVLYGDDD----LSLHLFSING-KH-LA-SSESNG--RLNCLELSACGQFLVCGGDQG 346 (413)
Q Consensus 277 -~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~i~d~~~-~~-~~-~~~~~~--~i~~~~~s~~~~~l~~~~~dg 346 (413)
..+.........++.|+..+.+++....+ ..|..+|+.+ .. .. ...+.. .+..+.+. .+.++++...+|
T Consensus 311 ~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g 389 (751)
T 2xe4_A 311 LEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAG 389 (751)
T ss_dssp EEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETT
T ss_pred eEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCC
Confidence 33332222334444444444445555443 3677777763 22 11 222222 34555554 234455566677
Q ss_pred e--EEEEEC-------CCCceEEEecCCC-CcEEEEEE----ccCC-eEE-E-EcC--CCeEEEEEecCCc
Q 040361 347 Q--IVVRSM-------NSLEVVRRYSGVG-KIITSLAV----TPEE-CFL-A-GTK--DGCLLVYSIENRR 398 (413)
Q Consensus 347 ~--i~v~d~-------~~~~~~~~~~~~~-~~v~~~~~----~~~~-~~l-~-~~~--dg~i~vw~~~~~~ 398 (413)
. |+++|+ ..++....+.... ..+..+.+ ++++ .++ + .+. -..++.+|+.+++
T Consensus 390 ~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 460 (751)
T 2xe4_A 390 LTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS 460 (751)
T ss_dssp EEEEEEEECCTTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC
T ss_pred EEEEEEEecccccccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 5 556675 3433134443211 22334433 3343 333 3 332 2457777776654
No 280
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.62 E-value=3e-05 Score=66.65 Aligned_cols=228 Identities=17% Similarity=0.251 Sum_probs=140.8
Q ss_pred EEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCC----CCE--E--EEccC--CCcEEEEEeccccccccccccc
Q 040361 149 ITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTD----GSI--L--ATGSY--DTTVMVWEVIRARAPEKRVRNM 218 (413)
Q Consensus 149 ~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~~--l--~s~s~--dg~i~iw~~~~~~~~~~~~~~~ 218 (413)
+++....+-+.+||+ +|+.++.+.. +.++.+..-|+ ++. + ++.-. +++|.+|++.........+..
T Consensus 43 ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~- 118 (355)
T 3amr_A 43 LITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTD- 118 (355)
T ss_dssp EEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSC-
T ss_pred EEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccc-
Confidence 444455789999999 8999988864 55666666553 222 2 33333 578999988533211100000
Q ss_pred eeecCCCceeeecCceeeeecCCCCeEEEEE--ecC-CC-EEEEeeCCCcEEEEEcc-------CCeEEEEEeCCCCCce
Q 040361 219 QIEAPRKDYVIVETPFHILCGHDDIITCLYV--SVE-LD-IVISGSKDGTCVFHTLR-------EGRYVRSLCHPSGSAL 287 (413)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~--~~~-~~-~l~s~~~dg~i~vwd~~-------~~~~~~~~~~~~~~~v 287 (413)
....+..-...+..+++ ++. +. +++....+|.+..|++. +.+.++++... ..+
T Consensus 119 --------------~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg--sq~ 182 (355)
T 3amr_A 119 --------------PDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN--SQT 182 (355)
T ss_dssp --------------TTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS--SCE
T ss_pred --------------cccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC--CCc
Confidence 00000011145566776 664 33 57788889999999983 44667888764 478
Q ss_pred eeEEEccCCcEEEEECCCCeEEEEEeC--C----ceeeeee---cCCceeEEEe--cCCCC-EEEEeC-CCCeEEEEECC
Q 040361 288 SKLAASRHGRIVLYGDDDLSLHLFSIN--G----KHLASSE---SNGRLNCLEL--SACGQ-FLVCGG-DQGQIVVRSMN 354 (413)
Q Consensus 288 ~~~~~~~~~~~l~~~~~d~~i~i~d~~--~----~~~~~~~---~~~~i~~~~~--s~~~~-~l~~~~-~dg~i~v~d~~ 354 (413)
..++..+....|+++-.+.-|..|+.+ + ..+.... ....+..|++ .++++ ||++++ .++...+||..
T Consensus 183 EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 183 EGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred ceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 899999988899999988777777754 1 2232222 2246788887 45565 666665 67799999997
Q ss_pred -CCceEEEecC----------CCCcE--EEEEE---ccCCeEEE--EcC-------CCeEEEEEecC
Q 040361 355 -SLEVVRRYSG----------VGKII--TSLAV---TPEECFLA--GTK-------DGCLLVYSIEN 396 (413)
Q Consensus 355 -~~~~~~~~~~----------~~~~v--~~~~~---~~~~~~l~--~~~-------dg~i~vw~~~~ 396 (413)
+.+.+..|.- +...+ ..+.+ -|.|.+++ +.. +.+.++.+.+.
T Consensus 263 ~~~~~vg~f~Ig~~~~idgv~eTDG~~v~~~~lG~~fP~Gl~V~qDg~n~~~~~~~~qnFk~v~w~~ 329 (355)
T 3amr_A 263 GKNKYVADFRITDGPETDGTSDTDGIDVLGFGLGPEYPFGIFVAQDGENIDHGQKANQNFKIVPWER 329 (355)
T ss_dssp TTCCEEEEEEECCCSSSCCCCSCCCEEEECSCCSTTCTTCEEEEEESSCEETTEECCCEEEEEEHHH
T ss_pred CCCcEEEEEEecCCCCceeeeccCcceEEccccCCCCCCcEEEEecCCcccCCCCcCceEEEEEHHH
Confidence 6777777741 12222 33333 24577777 322 57788887654
No 281
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.58 E-value=2.1e-06 Score=82.55 Aligned_cols=231 Identities=11% Similarity=0.068 Sum_probs=124.8
Q ss_pred eEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCe-EEEEEECCCCCEEEEcc-CC-----CcEEEEEeccc
Q 040361 136 CFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDV-VSCVAVTTDGSILATGS-YD-----TTVMVWEVIRA 208 (413)
Q Consensus 136 ~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~l~s~s-~d-----g~i~iw~~~~~ 208 (413)
+..+++..++..+++.|..+..+.+||..+++....-..+... -.+++..++++.++.|+ .+ ..+.+||..+.
T Consensus 245 ~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~ 324 (656)
T 1k3i_A 245 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK 324 (656)
T ss_dssp SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred cccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence 4445667888888887766779999999876544322222111 12445567899999998 44 56899998765
Q ss_pred cccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeC---------CCcEEEEEccCCeEEEEE
Q 040361 209 RAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSK---------DGTCVFHTLREGRYVRSL 279 (413)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~---------dg~i~vwd~~~~~~~~~~ 279 (413)
.... +..... .+...- .+. . .+..++..++.|+. ...+..||..+.......
T Consensus 325 ~W~~--~~~~~~-----------~p~~~~-~~~-~----~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~ 385 (656)
T 1k3i_A 325 TWTS--LPNAKV-----------NPMLTA-DKQ-G----LYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSA 385 (656)
T ss_dssp EEEE--ETTSCS-----------GGGCCC-CTT-G----GGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEE
T ss_pred ccee--CCCccc-----------cccccc-ccc-c----eeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecC
Confidence 4211 000000 000000 000 0 01122333333333 345778888776644332
Q ss_pred eCCC--------CCceeeEEEc-cCCcEEEEECCCC-----------eEEEEEeCCceeeee-----ecCCceeEEEecC
Q 040361 280 CHPS--------GSALSKLAAS-RHGRIVLYGDDDL-----------SLHLFSINGKHLASS-----ESNGRLNCLELSA 334 (413)
Q Consensus 280 ~~~~--------~~~v~~~~~~-~~~~~l~~~~~d~-----------~i~i~d~~~~~~~~~-----~~~~~i~~~~~s~ 334 (413)
.... ...-.++.+. .+++++++|+.++ .+.+||.....-... .....-.+++..|
T Consensus 386 ~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~ 465 (656)
T 1k3i_A 386 GKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLP 465 (656)
T ss_dssp EECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECT
T ss_pred CccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECC
Confidence 2111 0112233333 3678888887532 677888774332221 1122234556778
Q ss_pred CCCEEEEeCCC-----------CeEEEEECCCCceE--EEecCCCCcEEEEEEccCCeEEE-EcC
Q 040361 335 CGQFLVCGGDQ-----------GQIVVRSMNSLEVV--RRYSGVGKIITSLAVTPEECFLA-GTK 385 (413)
Q Consensus 335 ~~~~l~~~~~d-----------g~i~v~d~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~-~~~ 385 (413)
+++++++|+.+ ..+.+||..+.+-. ..+...........+.|++++++ |+.
T Consensus 466 ~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 466 DGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp TSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 99999999854 46899998765432 22222222334456778988775 653
No 282
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.57 E-value=1.6e-05 Score=64.86 Aligned_cols=157 Identities=13% Similarity=0.064 Sum_probs=109.6
Q ss_pred cCCC--CeEEEEEecCCCEEEEeeCCC--cEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeC
Q 040361 239 GHDD--IITCLYVSVELDIVISGSKDG--TCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSIN 314 (413)
Q Consensus 239 ~h~~--~i~~~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~ 314 (413)
.|.. -...+.|+. +.++.+.+.+| .|+.+|+.+++.+.++..+....-..++.. .+++....-.++.+.+||.+
T Consensus 16 phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~v~v~D~~ 93 (243)
T 3mbr_X 16 PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHEGFVYDLA 93 (243)
T ss_dssp ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSEEEEEETT
T ss_pred CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCEEEEEECC
Confidence 5654 356888886 56666766654 899999999999998876543222334443 34455556678999999998
Q ss_pred C-ceeeeeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCC-----CcEEEEEEccCCeEEE-EcCCC
Q 040361 315 G-KHLASSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVG-----KIITSLAVTPEECFLA-GTKDG 387 (413)
Q Consensus 315 ~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~-~~~dg 387 (413)
. +.+........- ..++++++.|+++..++.|.++|..+.+.+.++.... ..++.+.|. +|++.+ .-.+.
T Consensus 94 tl~~~~ti~~~~~G--wglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~ 170 (243)
T 3mbr_X 94 TLTPRARFRYPGEG--WALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTS 170 (243)
T ss_dssp TTEEEEEEECSSCC--CEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTT
T ss_pred cCcEEEEEeCCCCc--eEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCC
Confidence 4 444444444333 3444678777777788999999999999888876421 346777777 677666 44677
Q ss_pred eEEEEEecCCccc
Q 040361 388 CLLVYSIENRRTS 400 (413)
Q Consensus 388 ~i~vw~~~~~~~~ 400 (413)
.|.+.|.++++..
T Consensus 171 ~I~vIDp~tG~V~ 183 (243)
T 3mbr_X 171 RIARIDPASGKVV 183 (243)
T ss_dssp EEEEECTTTCBEE
T ss_pred eEEEEECCCCCEE
Confidence 8999999988754
No 283
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.54 E-value=0.00027 Score=61.46 Aligned_cols=227 Identities=11% Similarity=0.044 Sum_probs=128.2
Q ss_pred eeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEee---cCCCeEEEEEECCCCCEEEEccCCCcEEEEEecccccc
Q 040361 135 QCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIR---QHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAP 211 (413)
Q Consensus 135 ~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~ 211 (413)
.+..+.+.+ +.+.++|. ++.|.. ..+.|+.-..+. .+.+.+..+.+.+++..++.+ .+|.| |....+...
T Consensus 81 ~~~~i~~~~--~~~~~~g~-~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v--~~S~DgG~t 153 (327)
T 2xbg_A 81 RFNSVSFQG--NEGWIVGE-PPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAI--YRTKDSGKN 153 (327)
T ss_dssp EEEEEEEET--TEEEEEEE-TTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCE--EEESSTTSS
T ss_pred cEEEEEecC--CeEEEEEC-CCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccE--EEEcCCCCC
Confidence 345566654 34455564 564433 333344333332 234567788877777666655 45543 333332211
Q ss_pred ccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEE-EEccCCeEEEEEeCCCCCceeeE
Q 040361 212 EKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVF-HTLREGRYVRSLCHPSGSALSKL 290 (413)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~v-wd~~~~~~~~~~~~~~~~~v~~~ 290 (413)
+. .....+...+..+.+.+++.+++.+. +|.+.. +|- .+..-..+.......+..+
T Consensus 154 W~---------------------~~~~~~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~-gG~tW~~~~~~~~~~~~~~ 210 (327)
T 2xbg_A 154 WQ---------------------ALVQEAIGVMRNLNRSPSGEYVAVSS-RGSFYSTWEP-GQTAWEPHNRTTSRRLHNM 210 (327)
T ss_dssp EE---------------------EEECSCCCCEEEEEECTTSCEEEEET-TSSEEEEECT-TCSSCEEEECCSSSCEEEE
T ss_pred CE---------------------EeecCCCcceEEEEEcCCCcEEEEEC-CCcEEEEeCC-CCCceeECCCCCCCcccee
Confidence 11 11123445788899999888776664 454443 342 1222222222334568888
Q ss_pred EEccCCcEEEEECCCCeEEEEEeC-Cceeeeee-----cCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEec-
Q 040361 291 AASRHGRIVLYGDDDLSLHLFSIN-GKHLASSE-----SNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYS- 363 (413)
Q Consensus 291 ~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~-----~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~- 363 (413)
++.+++.+++++ .+|.+++.+.+ ++.-.... ....+..+++.+++.+++++. +|.| ++....++.-..+.
T Consensus 211 ~~~~~g~~~~~~-~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~ 287 (327)
T 2xbg_A 211 GFTPDGRLWMIV-NGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVD 287 (327)
T ss_dssp EECTTSCEEEEE-TTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGG
T ss_pred EECCCCCEEEEe-CCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCc
Confidence 999988766554 46777776433 33222111 223578899998888777765 5666 34445455444443
Q ss_pred --CCCCcEEEEEEccCCeEEEEcCCCeEEEEEe
Q 040361 364 --GVGKIITSLAVTPEECFLAGTKDGCLLVYSI 394 (413)
Q Consensus 364 --~~~~~v~~~~~~~~~~~l~~~~dg~i~vw~~ 394 (413)
.....+.++.|.+++.+++++.+|.|.-++-
T Consensus 288 ~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 288 VKKVPSNFYKILFFSPDQGFILGQKGILLRYVT 320 (327)
T ss_dssp GTTSSSCCCEEEEEETTEEEEECSTTEEEEECC
T ss_pred cCCCCCCeEEEEEECCCceEEEcCCceEEEEcC
Confidence 2235678888987788888889998766553
No 284
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.52 E-value=8.4e-06 Score=79.59 Aligned_cols=192 Identities=10% Similarity=0.083 Sum_probs=110.7
Q ss_pred eEEEEEEC-CCCCEEEEccC-C----CcEEEEEeccc-cccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEe
Q 040361 178 VVSCVAVT-TDGSILATGSY-D----TTVMVWEVIRA-RAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVS 250 (413)
Q Consensus 178 ~v~~~~~~-~~~~~l~s~s~-d----g~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~ 250 (413)
.+...+|| |||++|+.+.. + ..|+++|+.++ +.. ...+.. ....++|+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l----------------------~~~~~~---~~~~~~Ws 229 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTI----------------------ADKVSG---TNGEIVWG 229 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCC----------------------CCCEEE---ECSCCEEC
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeC----------------------CccccC---ceeeEEEe
Confidence 68889999 99998875432 2 35999999887 410 001111 12467899
Q ss_pred cCCCEEEEeeCC-----CcEEEEEccCCeE--EEEEeCCCCCceeeEEEccCCcEEEEEC---CCCeEEEEEeCCc--ee
Q 040361 251 VELDIVISGSKD-----GTCVFHTLREGRY--VRSLCHPSGSALSKLAASRHGRIVLYGD---DDLSLHLFSINGK--HL 318 (413)
Q Consensus 251 ~~~~~l~s~~~d-----g~i~vwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~i~d~~~~--~~ 318 (413)
||++.|+....| ..|+++++.++.. ...+..........+.|+|||++|+... ....|+++|+.+. ..
T Consensus 230 pDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~ 309 (751)
T 2xe4_A 230 PDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHN 309 (751)
T ss_dssp SSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCC
T ss_pred cCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCc
Confidence 999877766654 2588888877642 2233322223456789999999887655 3447888898742 22
Q ss_pred --ee--eecCCceeEEEecCCCCEEEEeCCC----CeEEEEECCCCceEEE-ecCCCC--cEEEEEEccCCeEEEEcCCC
Q 040361 319 --AS--SESNGRLNCLELSACGQFLVCGGDQ----GQIVVRSMNSLEVVRR-YSGVGK--IITSLAVTPEECFLAGTKDG 387 (413)
Q Consensus 319 --~~--~~~~~~i~~~~~s~~~~~l~~~~~d----g~i~v~d~~~~~~~~~-~~~~~~--~v~~~~~~~~~~~l~~~~dg 387 (413)
.. .........+.|+..+.+++....+ ..|..+|+.++..... +..+.. .+..+.+..+..+++...++
T Consensus 310 ~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g 389 (751)
T 2xe4_A 310 TLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAG 389 (751)
T ss_dssp CEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEETT
T ss_pred eeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEEeCC
Confidence 22 1233444555544444444454443 3677788765322222 222333 45566665332233566777
Q ss_pred eEE--EEEe
Q 040361 388 CLL--VYSI 394 (413)
Q Consensus 388 ~i~--vw~~ 394 (413)
..+ ++++
T Consensus 390 ~~~l~~~dl 398 (751)
T 2xe4_A 390 LTRIWTMMA 398 (751)
T ss_dssp EEEEEEEEC
T ss_pred EEEEEEEec
Confidence 644 4554
No 285
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.49 E-value=1.1e-05 Score=77.47 Aligned_cols=237 Identities=11% Similarity=0.024 Sum_probs=131.1
Q ss_pred EEEecC-CCCEEEEeecCC----------CeEEEEEcCCCcEE--EEeec-CCCeEEEEEECCCCCEEEEccC-CCcEEE
Q 040361 138 TTMQTP-SENFLITCGNWE----------NSFQVIALNDGRVV--QSIRQ-HRDVVSCVAVTTDGSILATGSY-DTTVMV 202 (413)
Q Consensus 138 ~~~~~~-~~~~l~~~g~~d----------~~i~i~~~~~~~~~--~~~~~-h~~~v~~~~~~~~~~~l~s~s~-dg~i~i 202 (413)
.+++.+ +++.+++.|... ..+.+||..+++.. ..+.. +.....++++..+++.++.|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 455566 666666655321 16889998876532 22322 3333345677789999999984 457999
Q ss_pred EEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEee-CC-----CcEEEEEccCCeEE
Q 040361 203 WEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGS-KD-----GTCVFHTLREGRYV 276 (413)
Q Consensus 203 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~-~d-----g~i~vwd~~~~~~~ 276 (413)
||..+.... . +..+.... .-.+++..+++++++.|+ .+ ..+.+||..+.+-.
T Consensus 270 yd~~t~~W~--~-------------------~~~~~~~R-~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~ 327 (656)
T 1k3i_A 270 YDSSSDSWI--P-------------------GPDMQVAR-GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT 327 (656)
T ss_dssp EEGGGTEEE--E-------------------CCCCSSCC-SSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred ecCcCCcee--E-------------------CCCCCccc-cccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcce
Confidence 998766421 0 11111111 112445567889999988 34 46899999887644
Q ss_pred EEE-----eCCCCCceeeEEEccCCcEEEEECCC---------CeEEEEEeCCceeee-ee-c---------CCceeEEE
Q 040361 277 RSL-----CHPSGSALSKLAASRHGRIVLYGDDD---------LSLHLFSINGKHLAS-SE-S---------NGRLNCLE 331 (413)
Q Consensus 277 ~~~-----~~~~~~~v~~~~~~~~~~~l~~~~~d---------~~i~i~d~~~~~~~~-~~-~---------~~~i~~~~ 331 (413)
..- ..... -....+..++..++.++.+ ..+..||.....-.. .. . ...-.++.
T Consensus 328 ~~~~~~~~p~~~~--~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~ 405 (656)
T 1k3i_A 328 SLPNAKVNPMLTA--DKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVM 405 (656)
T ss_dssp EETTSCSGGGCCC--CTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEE
T ss_pred eCCCccccccccc--cccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEe
Confidence 320 00100 0011222345555555444 356788887433111 11 1 11123444
Q ss_pred ec-CCCCEEEEeCCCC-----------eEEEEECCCCceEEEe--cCCCC-cEEEEEEccCCeEE-EEcCC---------
Q 040361 332 LS-ACGQFLVCGGDQG-----------QIVVRSMNSLEVVRRY--SGVGK-IITSLAVTPEECFL-AGTKD--------- 386 (413)
Q Consensus 332 ~s-~~~~~l~~~~~dg-----------~i~v~d~~~~~~~~~~--~~~~~-~v~~~~~~~~~~~l-~~~~d--------- 386 (413)
|. .+++++++|+.++ .|.+||..+.+-.... ..+.. .-.+++..|+++++ .|+.+
T Consensus 406 ~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~ 485 (656)
T 1k3i_A 406 YDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDST 485 (656)
T ss_dssp EETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCS
T ss_pred ccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCC
Confidence 43 3778888887543 6888888776543322 11222 22345667788766 46543
Q ss_pred --CeEEEEEecCCc
Q 040361 387 --GCLLVYSIENRR 398 (413)
Q Consensus 387 --g~i~vw~~~~~~ 398 (413)
..+.+||..+.+
T Consensus 486 ~~~~v~~ydp~t~~ 499 (656)
T 1k3i_A 486 PVFTPEIYVPEQDT 499 (656)
T ss_dssp BCCCCEEEEGGGTE
T ss_pred cccceEEEcCCCCc
Confidence 468899987754
No 286
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.49 E-value=0.00028 Score=68.65 Aligned_cols=229 Identities=13% Similarity=0.057 Sum_probs=140.3
Q ss_pred EEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCC-EEEEccCCCcEEEEEeccccccccccccceeecCCC
Q 040361 147 FLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGS-ILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRK 225 (413)
Q Consensus 147 ~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 225 (413)
+|+++. ...|+..++...+....+. ....+..|+|++... .+++-...+.|+.+++.......
T Consensus 397 ~Ll~an--~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~------------- 460 (791)
T 3m0c_C 397 YLFFTN--RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS------------- 460 (791)
T ss_dssp EEEEEC--BSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------------------
T ss_pred cccccc--ccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCc-------------
Confidence 444433 4568888887665554444 345678899988544 44555566788888876532000
Q ss_pred ceeeecCceeeeecCCCCeEEEEEecCCC-EEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEEC-
Q 040361 226 DYVIVETPFHILCGHDDIITCLYVSVELD-IVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGD- 303 (413)
Q Consensus 226 ~~~~~~~~~~~~~~h~~~i~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~- 303 (413)
.....+.........|++.+.++ ++++-...+.|.+.++.... ...+..........|+++|.+..|+...
T Consensus 461 ------~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~-~~~l~~~~l~~P~gIaVDp~~g~LYwtD~ 533 (791)
T 3m0c_C 461 ------SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLFRENGSKPRAIVVDPVHGFMYWTDW 533 (791)
T ss_dssp -------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS-EEEEEECTTCCEEEEEEETTTTEEEEEEC
T ss_pred ------ceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCe-EEEEEeCCCCCcceEEEecCCCCEEEecC
Confidence 01222222344567899987665 45555567899999986443 3333322234678999999755555543
Q ss_pred CC-CeEEEEEeCCceeeeee--cCCceeEEEecCCCCEEEEe-CCCCeEEEEECCCCceEEEecC--CCCcEEEEEEccC
Q 040361 304 DD-LSLHLFSINGKHLASSE--SNGRLNCLELSACGQFLVCG-GDQGQIVVRSMNSLEVVRRYSG--VGKIITSLAVTPE 377 (413)
Q Consensus 304 ~d-~~i~i~d~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~-~~dg~i~v~d~~~~~~~~~~~~--~~~~v~~~~~~~~ 377 (413)
.+ +.|...++++....... .-.....|++++.+..|+.+ ...+.|..+++........+.. .-....+|++..+
T Consensus 534 g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~ 613 (791)
T 3m0c_C 534 GTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED 613 (791)
T ss_dssp SSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETT
T ss_pred CCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCC
Confidence 33 78999999976654432 23578899999876666655 4567899999865443333322 2234567777655
Q ss_pred CeEEEEcCCCeEEEEEecCCc
Q 040361 378 ECFLAGTKDGCLLVYSIENRR 398 (413)
Q Consensus 378 ~~~l~~~~dg~i~vw~~~~~~ 398 (413)
..|++-...+.|...+..+++
T Consensus 614 ~lYwtD~~~~~I~~~dk~tG~ 634 (791)
T 3m0c_C 614 KVFWTDIINEAIFSANRLTGS 634 (791)
T ss_dssp EEEEEETTTTEEEEEETTTCC
T ss_pred EEEEEECCCCEEEEEeCCCCc
Confidence 445566677888887766654
No 287
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.40 E-value=0.00096 Score=63.34 Aligned_cols=228 Identities=12% Similarity=0.020 Sum_probs=145.0
Q ss_pred CCEEEEeecCCCeEEEEEcCCCcEEEEeec-CCCeEEEEEECCCCCEEE-EccCCCcEEEEEeccccccccccccceeec
Q 040361 145 ENFLITCGNWENSFQVIALNDGRVVQSIRQ-HRDVVSCVAVTTDGSILA-TGSYDTTVMVWEVIRARAPEKRVRNMQIEA 222 (413)
Q Consensus 145 ~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~-s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~ 222 (413)
..+|+++. ...|+..++.+......+.. .-..+..++|++.+..|+ +-..++.|..+++....
T Consensus 6 ~~~Ll~s~--~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~------------- 70 (628)
T 4a0p_A 6 EAFLLFSR--RADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSA------------- 70 (628)
T ss_dssp CCEEEEEE--TTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-------------
T ss_pred CcEEEEEe--CCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCC-------------
Confidence 34566543 67899999987655444332 335678999998655554 55567888888876543
Q ss_pred CCCceeeecCceeeeecCCCCeEEEEEecCCC-EEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEE
Q 040361 223 PRKDYVIVETPFHILCGHDDIITCLYVSVELD-IVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLY 301 (413)
Q Consensus 223 ~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 301 (413)
....+.........+++.+.+. +.++-...+.|.+.++.... ...+....-.....++++|....|+.
T Consensus 71 ----------~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~-~~~l~~~~l~~P~~iavdp~~G~lY~ 139 (628)
T 4a0p_A 71 ----------LEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQH-RQVLVWKDLDSPRALALDPAEGFMYW 139 (628)
T ss_dssp ----------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTT-CEEEECSSCCCEEEEEEETTTTEEEE
T ss_pred ----------cEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCc-EEEEEeCCCCCcccEEEccCCCeEEE
Confidence 1111221223467888887655 44555557789999985433 23332222345789999986555554
Q ss_pred EC--CCCeEEEEEeCCceeee-eecCCceeEEEecCCCCEEEEe-CCCCeEEEEECCCCceEEEecCCCCcEEEEEEccC
Q 040361 302 GD--DDLSLHLFSINGKHLAS-SESNGRLNCLELSACGQFLVCG-GDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPE 377 (413)
Q Consensus 302 ~~--~d~~i~i~d~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~ 377 (413)
.. ..+.|...++++..... ...-.....++++++++.|+.+ ...+.|..+|+..... ..+........++++..+
T Consensus 140 tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~~ 218 (628)
T 4a0p_A 140 TEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQD 218 (628)
T ss_dssp EECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEETT
T ss_pred eCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEECC
Confidence 43 35789889988654433 2344568899999986666555 5567899999875433 333333445678888765
Q ss_pred CeEEEEcCCCeEEEEEecCCcc
Q 040361 378 ECFLAGTKDGCLLVYSIENRRT 399 (413)
Q Consensus 378 ~~~l~~~~dg~i~vw~~~~~~~ 399 (413)
..|++-...+.|...|..+++.
T Consensus 219 ~ly~tD~~~~~I~~~dk~tg~~ 240 (628)
T 4a0p_A 219 YIYWTDWSRRSIERANKTSGQN 240 (628)
T ss_dssp EEEEEETTTTEEEEEETTTCCS
T ss_pred EEEEecCCCCEEEEEECCCCCc
Confidence 4455666778898888766653
No 288
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.39 E-value=0.00042 Score=67.36 Aligned_cols=206 Identities=11% Similarity=-0.070 Sum_probs=127.1
Q ss_pred cceeEEEEecCCCCEEEEeecCCCeEEEEEcCCC----cEEEEeecCCCeEEEEEECCCCCE-EEEccCCCcEEEEEecc
Q 040361 133 GSQCFTTMQTPSENFLITCGNWENSFQVIALNDG----RVVQSIRQHRDVVSCVAVTTDGSI-LATGSYDTTVMVWEVIR 207 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~----~~~~~~~~h~~~v~~~~~~~~~~~-l~s~s~dg~i~iw~~~~ 207 (413)
...+..+.+.+.+..|+.+-...+.|+.+++... .....+.........|++.+.+.. +++-...+.|.+.++..
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG 502 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 502 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence 3456778888877777776666788988888642 223334334455678888876644 45556678898888865
Q ss_pred ccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeC--CCcEEEEEccCCeEEEEEeCCCCC
Q 040361 208 ARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSK--DGTCVFHTLREGRYVRSLCHPSGS 285 (413)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~ 285 (413)
.. ....+.........|++.|....|+.... .+.|...++. |.....+....-.
T Consensus 503 ~~-----------------------~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~d-G~~~~~lv~~~l~ 558 (791)
T 3m0c_C 503 VK-----------------------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQ 558 (791)
T ss_dssp SS-----------------------EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCS
T ss_pred Ce-----------------------EEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecC-CCceEEEEeCCCC
Confidence 43 11222233445789999997665554442 3678888885 4434444332234
Q ss_pred ceeeEEEccCCcEEEEE-CCCCeEEEEEeCCceeeeeec----CCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEE
Q 040361 286 ALSKLAASRHGRIVLYG-DDDLSLHLFSINGKHLASSES----NGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVR 360 (413)
Q Consensus 286 ~v~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~----~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~ 360 (413)
....|++++.+..|+.+ ...+.|..+++++........ -.....|++. .+.++++-...+.|...|..+++.+.
T Consensus 559 ~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~-~~~lYwtD~~~~~I~~~dk~tG~~~~ 637 (791)
T 3m0c_C 559 WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVN 637 (791)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCE
T ss_pred CceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe-CCEEEEEECCCCEEEEEeCCCCcceE
Confidence 67899999765555544 556789999998655443321 1234566663 23444555567889888887776555
Q ss_pred Eec
Q 040361 361 RYS 363 (413)
Q Consensus 361 ~~~ 363 (413)
.+.
T Consensus 638 ~l~ 640 (791)
T 3m0c_C 638 LLA 640 (791)
T ss_dssp EEE
T ss_pred Eee
Confidence 543
No 289
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.36 E-value=0.00036 Score=60.01 Aligned_cols=182 Identities=13% Similarity=0.232 Sum_probs=119.9
Q ss_pred CCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCC----C---EEEEe
Q 040361 187 DGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVEL----D---IVISG 259 (413)
Q Consensus 187 ~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~----~---~l~s~ 259 (413)
...+++.....+-+.+||+ +++ .+..+.. +.++.+..-|+- + ++++.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~-----------------------~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as 92 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGK-----------------------MLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAAS 92 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSC-----------------------EEEEECC--SCEEEEEEEEEEEETTEEEEEEEEE
T ss_pred CccEEEEEcCCCCEEEEcC-CCc-----------------------EEEEccC--CCcccEEEecccccCCceEeEEEEe
Confidence 3455666667788999999 555 3444432 556666665532 2 23333
Q ss_pred e-C--CCcEEEEEcc--CCeEEEEEeC---C--CC-CceeeEEE--ccC-Cc-EEEEECCCCeEEEEEeC--------Cc
Q 040361 260 S-K--DGTCVFHTLR--EGRYVRSLCH---P--SG-SALSKLAA--SRH-GR-IVLYGDDDLSLHLFSIN--------GK 316 (413)
Q Consensus 260 ~-~--dg~i~vwd~~--~~~~~~~~~~---~--~~-~~v~~~~~--~~~-~~-~l~~~~~d~~i~i~d~~--------~~ 316 (413)
. . +.+|.+|++. ++ .+..+.. + .. ..+..+++ ++. +. ++++...+|.+..|++. .+
T Consensus 93 ~R~~~~n~l~vf~iDp~~~-~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~ 171 (355)
T 3amr_A 93 NRSEGKNTIEIYAIDGKNG-TLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGK 171 (355)
T ss_dssp ECSTTCCEEEEEEECTTTC-CEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEE
T ss_pred CCCCCCCeEEEEEECCCCC-ceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccce
Confidence 3 3 5789999773 33 3444422 1 22 46777888 664 43 68888889999999883 23
Q ss_pred eeeeeecCCceeEEEecCCCCEEEEeCCCCeEEEEECC-----CCceEEEec-C-CCCcEEEEEEc--cCC--eEEEEc-
Q 040361 317 HLASSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMN-----SLEVVRRYS-G-VGKIITSLAVT--PEE--CFLAGT- 384 (413)
Q Consensus 317 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~-----~~~~~~~~~-~-~~~~v~~~~~~--~~~--~~l~~~- 384 (413)
.+..+...+.+..++..+....|+++-++.-|..|+.. +++.+..+. + ....+..|++- +++ .+++++
T Consensus 172 lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQ 251 (355)
T 3amr_A 172 KVRAFKMNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQ 251 (355)
T ss_dssp EEEEEECSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEG
T ss_pred EEEEecCCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcC
Confidence 34456677889999999999999999999888888865 345665553 2 22468888884 443 455544
Q ss_pred CCCeEEEEEec
Q 040361 385 KDGCLLVYSIE 395 (413)
Q Consensus 385 ~dg~i~vw~~~ 395 (413)
.++.+.+|+.+
T Consensus 252 G~~s~~Vydr~ 262 (355)
T 3amr_A 252 GNSSYAIYDRQ 262 (355)
T ss_dssp GGTEEEEEESS
T ss_pred CCCEEEEEECC
Confidence 67799999996
No 290
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.34 E-value=0.0012 Score=57.44 Aligned_cols=233 Identities=9% Similarity=0.029 Sum_probs=126.7
Q ss_pred eeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEee----cCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccc
Q 040361 135 QCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIR----QHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARA 210 (413)
Q Consensus 135 ~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~----~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~ 210 (413)
.+.++.+.+++..++ +|. +|.| +...+.|+.-..+. .....+..+.+.+ +. ++.++.++.| |....+..
T Consensus 37 ~~~~v~~~~~~~~~~-~G~-~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~-~~~~g~~g~i--~~S~DgG~ 109 (327)
T 2xbg_A 37 TILDMSFIDRHHGWL-VGV-NATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NE-GWIVGEPPIM--LHTTDGGQ 109 (327)
T ss_dssp CEEEEEESSSSCEEE-EET-TTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TE-EEEEEETTEE--EEESSTTS
T ss_pred cEEEEEECCCCcEEE-EcC-CCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-Ce-EEEEECCCeE--EEECCCCC
Confidence 456666666666555 565 6655 33344443322221 1245788999976 44 4444556643 33333321
Q ss_pred cccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeE
Q 040361 211 PEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKL 290 (413)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~ 290 (413)
.+..+ .....+.+.+..+.+.+++..++.+ .+|.|.. ....|+.-..........+..+
T Consensus 110 tW~~~-------------------~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~ 168 (327)
T 2xbg_A 110 SWSQI-------------------PLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNL 168 (327)
T ss_dssp SCEEC-------------------CCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEE
T ss_pred CceEC-------------------ccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEE
Confidence 11111 0001123446677777766655555 4565432 1223433333333333468889
Q ss_pred EEccCCcEEEEECCCCeEEEEEeCCcee--eeeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecC----
Q 040361 291 AASRHGRIVLYGDDDLSLHLFSINGKHL--ASSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSG---- 364 (413)
Q Consensus 291 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~---- 364 (413)
++.+++.+++++...+..+-.|-.+..- ........+..+.+.++++.++++ .+|.+++.+...++.-..+..
T Consensus 169 ~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~~-~~G~~~~s~~D~G~tW~~~~~~~~~ 247 (327)
T 2xbg_A 169 NRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMIV-NGGKIAFSDPDNSENWGELLSPLRR 247 (327)
T ss_dssp EECTTSCEEEEETTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEEEE-TTTEEEEEETTEEEEECCCBCTTSS
T ss_pred EEcCCCcEEEEECCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEEEe-CCceEEEecCCCCCeeEeccCCccc
Confidence 9999988887776544444444323221 222345678889999998876555 578877765333443332321
Q ss_pred CCCcEEEEEEccCCeEEEEcCCCeEEEEEecCC
Q 040361 365 VGKIITSLAVTPEECFLAGTKDGCLLVYSIENR 397 (413)
Q Consensus 365 ~~~~v~~~~~~~~~~~l~~~~dg~i~vw~~~~~ 397 (413)
....+.++.+.+++.+++++.+|.| ++..+.+
T Consensus 248 ~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG 279 (327)
T 2xbg_A 248 NSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDGG 279 (327)
T ss_dssp CCSCEEEEEESSSSCEEEEESTTCE-EEESSTT
T ss_pred CCcceEEEEecCCCEEEEEeCCCeE-EEeCCCC
Confidence 2245889999988887776667877 3444444
No 291
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.32 E-value=4.1e-06 Score=80.75 Aligned_cols=217 Identities=10% Similarity=-0.066 Sum_probs=127.1
Q ss_pred ceeEEEEecCCCCEEEEeecCCCeEEEEEcCC----CcEEEEeecCCCeEEEEEECCC-CCEEEEccCCCcEEEEEeccc
Q 040361 134 SQCFTTMQTPSENFLITCGNWENSFQVIALND----GRVVQSIRQHRDVVSCVAVTTD-GSILATGSYDTTVMVWEVIRA 208 (413)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~----~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~dg~i~iw~~~~~ 208 (413)
..+..++|.+.++.|+.+-...+.|+.+++.. ......+.........|++.+. ++++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 34566778888888887766678999999865 2222222212233456788754 445555556788988887644
Q ss_pred cccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEee-C-CCcEEEEEccCCeEEEEEeCCCCCc
Q 040361 209 RAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGS-K-DGTCVFHTLREGRYVRSLCHPSGSA 286 (413)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~-~-dg~i~vwd~~~~~~~~~~~~~~~~~ 286 (413)
. ....+.........+++.|.+..|+.+. . .+.|...++.. .....+....-..
T Consensus 486 ~-----------------------~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG-~~~~~l~~~~l~~ 541 (699)
T 1n7d_A 486 K-----------------------RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTENIQW 541 (699)
T ss_dssp C-----------------------EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSS-CCCCEESCSSCSS
T ss_pred c-----------------------eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCC-CCeeEEEeCCCCC
Confidence 3 1111111123456788888655444433 2 26788777643 2222222111235
Q ss_pred eeeEEEccCC-cEEEEECCCCeEEEEEeCCceeeeee----cCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEE
Q 040361 287 LSKLAASRHG-RIVLYGDDDLSLHLFSINGKHLASSE----SNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRR 361 (413)
Q Consensus 287 v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~----~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~ 361 (413)
...|++++++ .++++-...+.|..+++++....... .......|++..+ .++++....+.|..++..+++.+..
T Consensus 542 PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~ 620 (699)
T 1n7d_A 542 PNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNL 620 (699)
T ss_dssp CCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEEC
T ss_pred ccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEE
Confidence 6789999865 45555566789999999864433321 1233455666543 4455556678999999988888877
Q ss_pred ecCCCCcEEEEEEc
Q 040361 362 YSGVGKIITSLAVT 375 (413)
Q Consensus 362 ~~~~~~~v~~~~~~ 375 (413)
+......+..|++.
T Consensus 621 i~~~~~~P~~i~v~ 634 (699)
T 1n7d_A 621 LAENLLSPEDMVLF 634 (699)
T ss_dssp CCTTCSSCCCCCBC
T ss_pred eecCCCCCcEEEEe
Confidence 75433334555444
No 292
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.25 E-value=8.9e-06 Score=78.40 Aligned_cols=223 Identities=13% Similarity=0.038 Sum_probs=131.1
Q ss_pred CCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEc-cCCCcEEEEEeccccccccccccceeecCCCceeeecCc
Q 040361 155 ENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATG-SYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETP 233 (413)
Q Consensus 155 d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (413)
.+.|+..++...+....+.. ...+..++|++.+..|+.+ ...+.|..+++........ .
T Consensus 385 ~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~-------------------~ 444 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS-------------------Y 444 (699)
T ss_dssp TTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CC-------------------C
T ss_pred ccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcc-------------------e
Confidence 45788888877665544433 2346688999866666554 4567888888865210000 0
Q ss_pred eeeeecCCCCeEEEEEecC-CCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECC--CCeEEE
Q 040361 234 FHILCGHDDIITCLYVSVE-LDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDD--DLSLHL 310 (413)
Q Consensus 234 ~~~~~~h~~~i~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~i 310 (413)
...+.........+++.+. ++++++-...+.|.+.++..... ..+..........++++|.+..|+.+.. .+.|..
T Consensus 445 ~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~-~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~ 523 (699)
T 1n7d_A 445 DTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKK 523 (699)
T ss_dssp CCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCE-EEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEB
T ss_pred EEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCce-EEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEE
Confidence 1111111123455777754 44555555678899999865433 3332222235678999997665555443 278988
Q ss_pred EEeCCceeeee--ecCCceeEEEecCCCC-EEEEeCCCCeEEEEECCCCceEEEec--CCCCcEEEEEEccCCeEEEEcC
Q 040361 311 FSINGKHLASS--ESNGRLNCLELSACGQ-FLVCGGDQGQIVVRSMNSLEVVRRYS--GVGKIITSLAVTPEECFLAGTK 385 (413)
Q Consensus 311 ~d~~~~~~~~~--~~~~~i~~~~~s~~~~-~l~~~~~dg~i~v~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~ 385 (413)
+++.+...... ..-...+.|+|+|++. ++++-...+.|.++++........+. ........|++..+..|++...
T Consensus 524 ~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~lywtd~~ 603 (699)
T 1n7d_A 524 GGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDII 603 (699)
T ss_dssp CCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETTEEEEECST
T ss_pred EeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECCEEEEEeCC
Confidence 88886544332 2234567899998755 44555667899999986433222222 1123345667766655667667
Q ss_pred CCeEEEEEecCCc
Q 040361 386 DGCLLVYSIENRR 398 (413)
Q Consensus 386 dg~i~vw~~~~~~ 398 (413)
.+.|..++..+++
T Consensus 604 ~~~V~~~d~~~G~ 616 (699)
T 1n7d_A 604 NEAIFSANRLTGS 616 (699)
T ss_dssp TTCEEEEETTTEE
T ss_pred CCeEEEEEccCCC
Confidence 7889999876654
No 293
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.25 E-value=0.0015 Score=55.64 Aligned_cols=207 Identities=8% Similarity=0.054 Sum_probs=122.5
Q ss_pred EEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecC-------CCeEEEEEE---CCCCCEEEEcc------------
Q 040361 138 TTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQH-------RDVVSCVAV---TTDGSILATGS------------ 195 (413)
Q Consensus 138 ~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h-------~~~v~~~~~---~~~~~~l~s~s------------ 195 (413)
+..|.+.+..+.++....+.|..|+...+......... ...+..|.| .|+++++++..
T Consensus 17 ~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~ 96 (334)
T 2p9w_A 17 DTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSS 96 (334)
T ss_dssp CEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCS
T ss_pred CccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccccc
Confidence 35677777777777767999999998766544332212 124689999 68877777533
Q ss_pred -CCCcEEEEEec---ccccccccc-ccceeecCCCceeeecCceeeeec-CCCCeEEEEEecCCCEEEEeeCC-CcEEEE
Q 040361 196 -YDTTVMVWEVI---RARAPEKRV-RNMQIEAPRKDYVIVETPFHILCG-HDDIITCLYVSVELDIVISGSKD-GTCVFH 268 (413)
Q Consensus 196 -~dg~i~iw~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-h~~~i~~~~~~~~~~~l~s~~~d-g~i~vw 268 (413)
.+..|..+|+. +++.....- .... ...+.+.+ -......++..++|+..++++.. +.|...
T Consensus 97 ~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~------------~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV 164 (334)
T 2p9w_A 97 HGASSFHSFNLPLSENSKPVWSVNFEKVQ------------DEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARV 164 (334)
T ss_dssp SSCCEEEEEESSCCTTCCCSEEEESHHHH------------HHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEE
T ss_pred CCCCEEEEEcCCcCCCCCEEEEecCcccc------------ccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEE
Confidence 25778899988 555211000 0000 00000001 11247889999999999988888 877777
Q ss_pred EccCCeEEEEEe--C---CCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCcee---eee--e---cCCceeEE-EecC
Q 040361 269 TLREGRYVRSLC--H---PSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKHL---ASS--E---SNGRLNCL-ELSA 334 (413)
Q Consensus 269 d~~~~~~~~~~~--~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---~~~--~---~~~~i~~~-~~s~ 334 (413)
+.. ++.+..+. . ......+.+++.|+++.|++....+.|..+|++.... ... + .-.....+ ..-.
T Consensus 165 ~pd-G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~ 243 (334)
T 2p9w_A 165 SAD-GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPV 243 (334)
T ss_dssp CTT-SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEE
T ss_pred eCC-CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCccccccccc
Confidence 764 33333222 1 1123467899999999988887799999999873221 111 1 11123333 3334
Q ss_pred CCCEE-EEeCCCCeEEEEECCCCc
Q 040361 335 CGQFL-VCGGDQGQIVVRSMNSLE 357 (413)
Q Consensus 335 ~~~~l-~~~~~dg~i~v~d~~~~~ 357 (413)
+|+.+ ++....+.+.+.+...++
T Consensus 244 ~G~vllV~~~~~~~~~l~S~DgW~ 267 (334)
T 2p9w_A 244 GNESVLVGARAPYAISFRSWDNWK 267 (334)
T ss_dssp TTEEEEEEEETTEEEEEECSSTTS
T ss_pred CCEEEEEEcCCCCEEEEECCCCcc
Confidence 67774 444456666666655443
No 294
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.25 E-value=5.5e-05 Score=64.42 Aligned_cols=157 Identities=10% Similarity=0.078 Sum_probs=108.6
Q ss_pred eEEEEEECCCCCEEEEcc-CCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeec----CC--CCeEEEEE-
Q 040361 178 VVSCVAVTTDGSILATGS-YDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCG----HD--DIITCLYV- 249 (413)
Q Consensus 178 ~v~~~~~~~~~~~l~s~s-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----h~--~~i~~~~~- 249 (413)
.-.+++|++....|+.++ ..++|..|+...+... .+ .+.+ .. ..+..+.|
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~---------------------~~-~~~~~s~~g~~~~~~sGl~~~ 71 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHF---------------------NV-VIDGASSNGDGEQQMSGLSLL 71 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEE---------------------EE-CCTTTCCSSCCSEEEEEEEES
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEE---------------------EE-ecCCccccCCCcceeeEEEEe
Confidence 344688987555555555 7899999998644310 01 1111 01 13478899
Q ss_pred --ecCCCEEEEee-------------CCCcEEEEEcc---CCeEEEEEeCC------------CCCceeeEEEccCCcEE
Q 040361 250 --SVELDIVISGS-------------KDGTCVFHTLR---EGRYVRSLCHP------------SGSALSKLAASRHGRIV 299 (413)
Q Consensus 250 --~~~~~~l~s~~-------------~dg~i~vwd~~---~~~~~~~~~~~------------~~~~v~~~~~~~~~~~l 299 (413)
.++++++++.. .+..|..+|+. +++.+...... .......++..++|+..
T Consensus 72 ~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaY 151 (334)
T 2p9w_A 72 THDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSY 151 (334)
T ss_dssp SSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEE
T ss_pred ccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEE
Confidence 58877766543 26779999998 78877665421 11247899999999999
Q ss_pred EEECCC-CeEEEEEeCCceeeeee-------cCCceeEEEecCCCCEEEEeCCCCeEEEEECCCC
Q 040361 300 LYGDDD-LSLHLFSINGKHLASSE-------SNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSL 356 (413)
Q Consensus 300 ~~~~~d-~~i~i~d~~~~~~~~~~-------~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~ 356 (413)
++++.. +.|..++.+++.+.... .....+.++++|+|+.|++....|.+..+|+...
T Consensus 152 Vt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 152 VAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp EEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred EeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence 998888 88888888876544321 1123679999999998888877999999998854
No 295
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.24 E-value=0.00011 Score=66.63 Aligned_cols=152 Identities=7% Similarity=0.019 Sum_probs=101.0
Q ss_pred CeEEEEEec-CCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECC-CC----eEEEEEeCCc
Q 040361 243 IITCLYVSV-ELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDD-DL----SLHLFSINGK 316 (413)
Q Consensus 243 ~i~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~----~i~i~d~~~~ 316 (413)
....++++| +...|..+...+.|+.+|+..+....... .......++++++++.|+++.. ++ .+..++..+.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~--~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~ 215 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS--GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESG 215 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC--CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGT
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec--CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCc
Confidence 456789997 45556666555889999997766544333 2346889999999995555543 22 3555555443
Q ss_pred ee--eeeecCCceeEEEecC-CCCEEEEeCCCCeEEEEECCCCceEEEec-CCCCcEEEEEEccCCe-EE-EEcCCCeEE
Q 040361 317 HL--ASSESNGRLNCLELSA-CGQFLVCGGDQGQIVVRSMNSLEVVRRYS-GVGKIITSLAVTPEEC-FL-AGTKDGCLL 390 (413)
Q Consensus 317 ~~--~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~l-~~~~dg~i~ 390 (413)
.. ...........++++| +|.++++-..++.|+.++...+....... ........++|+|++. ++ +-...+.|.
T Consensus 216 ~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~ 295 (430)
T 3tc9_A 216 FKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYIL 295 (430)
T ss_dssp SCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEE
T ss_pred eeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEE
Confidence 22 1222334567889999 67777777788999999998765422222 1224578999999986 33 566788999
Q ss_pred EEEecC
Q 040361 391 VYSIEN 396 (413)
Q Consensus 391 vw~~~~ 396 (413)
.++.+.
T Consensus 296 ~~~~d~ 301 (430)
T 3tc9_A 296 RSDYDW 301 (430)
T ss_dssp EEEEET
T ss_pred EEeCCc
Confidence 988764
No 296
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.20 E-value=0.00069 Score=64.25 Aligned_cols=222 Identities=9% Similarity=0.007 Sum_probs=130.5
Q ss_pred CCeEEEEEcCCCc-EEEEeecCCCeEEEEEECCCCCEEEEc-cCCCcEEEEEeccccccccccccceeecCCCceeeecC
Q 040361 155 ENSFQVIALNDGR-VVQSIRQHRDVVSCVAVTTDGSILATG-SYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVET 232 (413)
Q Consensus 155 d~~i~i~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~l~s~-s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (413)
...|+..++.... ....+...-.....++|++.+..|+.+ ...+.|..+++.....
T Consensus 17 ~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~---------------------- 74 (619)
T 3s94_A 17 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES---------------------- 74 (619)
T ss_dssp SSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC---------------------------
T ss_pred cccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCc----------------------
Confidence 6788888886543 122222234567899999866665544 4567788888765420
Q ss_pred ceeeeecCCCCeEEEEEecCCC-EEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEEC--CCCeEE
Q 040361 233 PFHILCGHDDIITCLYVSVELD-IVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGD--DDLSLH 309 (413)
Q Consensus 233 ~~~~~~~h~~~i~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~ 309 (413)
....+..--.....+++.+.++ ++++-...+.|.+.++... ....+....-.....++++|.+..|+... ..+.|.
T Consensus 75 ~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~-~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~ 153 (619)
T 3s94_A 75 VQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGS-LRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIE 153 (619)
T ss_dssp CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEE
T ss_pred eEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCC-CEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEE
Confidence 0112222224678899998555 4555556789999998643 33333322234578899999755555443 246888
Q ss_pred EEEeCCceeeee--ecCCceeEEEecCCCCEEEEe-CCCCeEEEEECCCCceEEEecCCCCcEEEEEEccCCeEEEEcCC
Q 040361 310 LFSINGKHLASS--ESNGRLNCLELSACGQFLVCG-GDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFLAGTKD 386 (413)
Q Consensus 310 i~d~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~-~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d 386 (413)
..+++|...... ..-.....++++++++.|+.+ ...+.|..+|+..........+......++++..+..|++-...
T Consensus 154 r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~~ly~td~~~ 233 (619)
T 3s94_A 154 RAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWST 233 (619)
T ss_dssp EEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSSEEEEECTTT
T ss_pred EEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCCEEEEecCCC
Confidence 888886544332 234567899999976655554 55678999988653332222212223456778777445566677
Q ss_pred CeEEEEEecCCcc
Q 040361 387 GCLLVYSIENRRT 399 (413)
Q Consensus 387 g~i~vw~~~~~~~ 399 (413)
+.|...|..+++.
T Consensus 234 ~~V~~~d~~tg~~ 246 (619)
T 3s94_A 234 HSILACNKYTGEG 246 (619)
T ss_dssp CSEEEEESSSCCC
T ss_pred CEEEEEECCCCcc
Confidence 8888888877653
No 297
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.18 E-value=0.0013 Score=62.47 Aligned_cols=204 Identities=9% Similarity=-0.075 Sum_probs=122.7
Q ss_pred ceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcE-EEEeecCCCeEEEEEECCCCC-EEEEccCCCcEEEEEecccccc
Q 040361 134 SQCFTTMQTPSENFLITCGNWENSFQVIALNDGRV-VQSIRQHRDVVSCVAVTTDGS-ILATGSYDTTVMVWEVIRARAP 211 (413)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~-~l~s~s~dg~i~iw~~~~~~~~ 211 (413)
.....+.+.+.++.+..+-...+.|..++++.... ...+..-......+++.+.+. .+++-...+.|.+.+++...
T Consensus 40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~-- 117 (619)
T 3s94_A 40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL-- 117 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--
T ss_pred CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCC--
Confidence 34577888888888887766678899999865432 233333335788999998555 44555667889999886543
Q ss_pred ccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeC--CCcEEEEEccCCeEEEEEeCCCCCceee
Q 040361 212 EKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSK--DGTCVFHTLREGRYVRSLCHPSGSALSK 289 (413)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~v~~ 289 (413)
....+...-.....+++.|.+..|..... .+.|...++. |.....+..........
T Consensus 118 ---------------------~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~d-G~~~~~l~~~~~~~P~G 175 (619)
T 3s94_A 118 ---------------------RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIIINSEIYWPNG 175 (619)
T ss_dssp ---------------------CEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEEECSSCSSEEE
T ss_pred ---------------------EEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECC-CCceEEEEeCCCCCCcE
Confidence 11112133344678899987655554442 4566666664 33333333222346789
Q ss_pred EEEccCCcEE-EEECCCCeEEEEEeCCceeeeee--cCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEe
Q 040361 290 LAASRHGRIV-LYGDDDLSLHLFSINGKHLASSE--SNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRY 362 (413)
Q Consensus 290 ~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~ 362 (413)
+++++++..| ++-...+.|..+|+++....... .......+++..+ ..+++-..++.|...|..+++....+
T Consensus 176 lald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~i 250 (619)
T 3s94_A 176 LTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLREI 250 (619)
T ss_dssp EEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEEC
T ss_pred EEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEEE
Confidence 9999865554 45556778999999875544321 1223456777654 44445556778999998777654433
No 298
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.14 E-value=0.0058 Score=58.01 Aligned_cols=202 Identities=9% Similarity=-0.068 Sum_probs=127.8
Q ss_pred ceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEE-EEccCCCcEEEEEeccccccc
Q 040361 134 SQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSIL-ATGSYDTTVMVWEVIRARAPE 212 (413)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~s~dg~i~iw~~~~~~~~~ 212 (413)
.....+.|.+.++.+..+...++.|+.++++.......+.........+++.+.+..| ++-...+.|.+.+++...
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~--- 113 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQH--- 113 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTT---
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCc---
Confidence 3467888899888888877778899999987655444444333456778887655444 555566788888876543
Q ss_pred cccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEee--CCCcEEEEEccCCeEEEEEeCCCCCceeeE
Q 040361 213 KRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGS--KDGTCVFHTLREGRYVRSLCHPSGSALSKL 290 (413)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~ 290 (413)
....+...-.....+++.|....|.... ..+.|...++.... ...+.. .......+
T Consensus 114 --------------------~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~-~~~l~~-~~~~P~Gl 171 (628)
T 4a0p_A 114 --------------------RQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE-RTTLVP-NVGRANGL 171 (628)
T ss_dssp --------------------CEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEEEEC-SCSSEEEE
T ss_pred --------------------EEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc-eEEEEC-CCCCcceE
Confidence 1111112334568999998655555444 25677777775333 223322 23467899
Q ss_pred EEccCCcEEEE-ECCCCeEEEEEeCCceeee-eecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEE
Q 040361 291 AASRHGRIVLY-GDDDLSLHLFSINGKHLAS-SESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRR 361 (413)
Q Consensus 291 ~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~ 361 (413)
++++++..|+. -...+.|..+|+++..... .........+++.. +.++++-...+.|...|..+++....
T Consensus 172 alD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~~ 243 (628)
T 4a0p_A 172 TIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRTI 243 (628)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEE
T ss_pred EEccccCEEEEEECCCCEEEEEcCCCCceEEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceEE
Confidence 99997655554 4567899999998643332 22233456777764 44555555678899999777654433
No 299
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.13 E-value=0.0021 Score=56.44 Aligned_cols=225 Identities=11% Similarity=0.037 Sum_probs=116.9
Q ss_pred eeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEE--EEee---cCCCeEEEEEECCC---CCEEEEccC-C-----CcE
Q 040361 135 QCFTTMQTPSENFLITCGNWENSFQVIALNDGRVV--QSIR---QHRDVVSCVAVTTD---GSILATGSY-D-----TTV 200 (413)
Q Consensus 135 ~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~--~~~~---~h~~~v~~~~~~~~---~~~l~s~s~-d-----g~i 200 (413)
....+++.|+|+.+++ ..+|.|++++ +++.. ..+. ........|+|+|+ +..|+.+.. . +.|
T Consensus 32 ~P~~ia~~pdG~l~V~--e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 32 VPWALAFLPDGGMLIA--ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp CEEEEEECTTSCEEEE--ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CceEEEEcCCCeEEEE--eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 3567888999985554 3469999998 44422 2221 12356889999998 555554433 2 567
Q ss_pred EEEEeccccccccccccceeecCCCceeeecCceeeee---cCCCCeEEEEEecCCCEEEEeeCC-------------Cc
Q 040361 201 MVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILC---GHDDIITCLYVSVELDIVISGSKD-------------GT 264 (413)
Q Consensus 201 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~i~~~~~~~~~~~l~s~~~d-------------g~ 264 (413)
..++......... . ..+..+. +.......++|.|++.+.++.+.. |.
T Consensus 108 ~r~~~~~~~~~~~--~---------------~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~ 170 (352)
T 2ism_A 108 VRLRHLGERGVLD--R---------------VVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGK 170 (352)
T ss_dssp EEEEECSSCEEEE--E---------------EEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSE
T ss_pred EEEEeCCCCcCce--E---------------EEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceE
Confidence 7777653210000 0 0111121 111123578999999877664321 45
Q ss_pred EEEEEccCC------------eEEEEEeCCCCCceeeEEEcc-CCcEEEEECCCCe--------EEEEEeCCc-------
Q 040361 265 CVFHTLREG------------RYVRSLCHPSGSALSKLAASR-HGRIVLYGDDDLS--------LHLFSINGK------- 316 (413)
Q Consensus 265 i~vwd~~~~------------~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~--------i~i~d~~~~------- 316 (413)
|.-++.... .....+.... .....++|+| ++.++++-..... |.+....+.
T Consensus 171 I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~ 249 (352)
T 2ism_A 171 ILRLTPEGEPAPGNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVV 249 (352)
T ss_dssp EEEECTTSSBCTTCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCC
T ss_pred EEEEcCCCCCCCCCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCccc
Confidence 555554320 0001111111 1356789999 6666555433322 333221110
Q ss_pred ----------eeeeeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCce------EEEecCCCCcEEEEEEccCCeE
Q 040361 317 ----------HLASSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEV------VRRYSGVGKIITSLAVTPEECF 380 (413)
Q Consensus 317 ----------~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~------~~~~~~~~~~v~~~~~~~~~~~ 380 (413)
.............++| .+|.++++.-..+.|...++..... ...+......+..+++.|||.+
T Consensus 250 g~~~~~~~~~p~~~~~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~l 328 (352)
T 2ism_A 250 GRGNDPRYRDPLYFWPQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGAL 328 (352)
T ss_dssp SCCCCTTSCCCSEECTTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCE
T ss_pred CCCCCCCCcCCeEecCCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcE
Confidence 0011112234566777 4677777766777888887764321 1222222357899999999865
Q ss_pred EE
Q 040361 381 LA 382 (413)
Q Consensus 381 l~ 382 (413)
+.
T Consensus 329 yv 330 (352)
T 2ism_A 329 YV 330 (352)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 300
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.12 E-value=0.00087 Score=60.62 Aligned_cols=191 Identities=11% Similarity=0.022 Sum_probs=114.2
Q ss_pred eEEEEEECCC--CCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCE
Q 040361 178 VVSCVAVTTD--GSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDI 255 (413)
Q Consensus 178 ~v~~~~~~~~--~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~ 255 (413)
....++|+|+ +..|+.+...+.|+.++..++. +..+.........+++++++++
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~------------------------v~~~~~~~~~P~giavd~dG~l 195 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQY------------------------VDIKTTNIGQCADVNFTLNGDM 195 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTE------------------------EEEECCCCSCEEEEEECTTCCE
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCE------------------------EEEeecCCCCccEEEECCCCCE
Confidence 4568899984 3445554444889999886665 3334344556889999999995
Q ss_pred EEEeeCC---C-cEEEEEccCCeE-EEEEeCCCCCceeeEEEcc-CCcEEEEECCCCeEEEEEeC-Cceeee-e--ecCC
Q 040361 256 VISGSKD---G-TCVFHTLREGRY-VRSLCHPSGSALSKLAASR-HGRIVLYGDDDLSLHLFSIN-GKHLAS-S--ESNG 325 (413)
Q Consensus 256 l~s~~~d---g-~i~vwd~~~~~~-~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~-~~~~~~-~--~~~~ 325 (413)
+++-... . .+...+...+.. ...+.. ......++++| ++.++++-..++.|+.+|.. +..... . ....
T Consensus 196 yVad~~~~~~~~gv~~~~~~~~~~~~~~~~~--~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~ 273 (433)
T 4hw6_A 196 VVVDDQSSDTNTGIYLFTRASGFTERLSLCN--ARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKG 273 (433)
T ss_dssp EEEECCSCTTSEEEEEECGGGTTCCEEEEEE--CSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCS
T ss_pred EEEcCCCCcccceEEEEECCCCeeccccccc--cCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCC
Confidence 5544321 1 233333322111 111211 23457789999 77777777778899999997 433122 1 1222
Q ss_pred ceeEEEecCCCCEEE-EeCCCCeEEEEECC--CCce--EEEecCC---------------CCcEEEEEE---------cc
Q 040361 326 RLNCLELSACGQFLV-CGGDQGQIVVRSMN--SLEV--VRRYSGV---------------GKIITSLAV---------TP 376 (413)
Q Consensus 326 ~i~~~~~s~~~~~l~-~~~~dg~i~v~d~~--~~~~--~~~~~~~---------------~~~v~~~~~---------~~ 376 (413)
....++|+|+|++|+ +-...+.|+.++.. ++.. ...+.+. -.....+++ .+
T Consensus 274 ~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~ 353 (433)
T 4hw6_A 274 SNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEED 353 (433)
T ss_dssp SCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSC
T ss_pred CcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCC
Confidence 334699999999554 45567899998865 2321 1112111 123677999 66
Q ss_pred CCeEE-EEcCCCeEEEEEe
Q 040361 377 EECFL-AGTKDGCLLVYSI 394 (413)
Q Consensus 377 ~~~~l-~~~~dg~i~vw~~ 394 (413)
++.+. +-...++|+.++.
T Consensus 354 ~g~lyvaD~~n~~I~~~~~ 372 (433)
T 4hw6_A 354 EYDFYFCDRDSHTVRVLTP 372 (433)
T ss_dssp CEEEEEEETTTTEEEEECT
T ss_pred CCcEEEEECCCCEEEEECC
Confidence 77655 5566778888874
No 301
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.99 E-value=0.0056 Score=51.80 Aligned_cols=230 Identities=11% Similarity=0.122 Sum_probs=144.5
Q ss_pred EEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEecccccccccccc
Q 040361 138 TTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRN 217 (413)
Q Consensus 138 ~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~ 217 (413)
++..+|..+.+++-+ ...+.|+|+++.+.++.+.-. ..|.-=.|-.+ +.|+-.+ +..|.-|+++....
T Consensus 71 sAIMnP~~~ViALra--g~~LQiFnletK~klks~~~~-e~VvfWkWis~-~~L~lVT-~taVyHWs~~~~s~------- 138 (365)
T 2xzh_A 71 SAIMNPASKVIALKA--GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISL-NTVALVT-DNAVYHWSMEGESQ------- 138 (365)
T ss_dssp EEEECSSSSEEEEEE--TTEEEEEETTTTEEEEEEECS-SCEEEEEECSS-SEEEEEE-SSEEEEEESSTTCC-------
T ss_pred eeeeCCCccEEEEec--CCeEEEechHHhhhhcceecC-CccEEEEecCC-CeEEEEc-CCcEEEEcccCCCC-------
Confidence 344577777666644 679999999999988888754 45666666543 3444333 36799999976432
Q ss_pred ceeecCCCceeeecCceeeeecCC----CCeEEEEEecCCCEEEEeeC-------CCcEEEEEccCCeEEEEEeCCCCCc
Q 040361 218 MQIEAPRKDYVIVETPFHILCGHD----DIITCLYVSVELDIVISGSK-------DGTCVFHTLREGRYVRSLCHPSGSA 286 (413)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~h~----~~i~~~~~~~~~~~l~s~~~-------dg~i~vwd~~~~~~~~~~~~~~~~~ 286 (413)
|.+.+..|. ..|.....+++.++++..+- .|.+.+|..+.+. .+.+++|.
T Consensus 139 ---------------P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGha--- 199 (365)
T 2xzh_A 139 ---------------PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHA--- 199 (365)
T ss_dssp ---------------CEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECCSE---
T ss_pred ---------------CceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccc-cceeeeee---
Confidence 444554443 45666777788887654331 3678888876543 33344331
Q ss_pred eeeEEEccCC-----cEEEEECC---CCeEEEEEeCCc---------eeee--e---ecCCceeEEEecCCCCEEEEeCC
Q 040361 287 LSKLAASRHG-----RIVLYGDD---DLSLHLFSINGK---------HLAS--S---ESNGRLNCLELSACGQFLVCGGD 344 (413)
Q Consensus 287 v~~~~~~~~~-----~~l~~~~~---d~~i~i~d~~~~---------~~~~--~---~~~~~i~~~~~s~~~~~l~~~~~ 344 (413)
..-..+-.+| .+++.+.. .+++++-++... +... . ....-..++..++....+..-+.
T Consensus 200 a~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK 279 (365)
T 2xzh_A 200 ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK 279 (365)
T ss_dssp EEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEET
T ss_pred eeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeC
Confidence 1111221111 12332222 258888887421 1111 1 12345677888888888999999
Q ss_pred CCeEEEEECCCCceEEEecCCCCcEEEEEEccC-CeEEEEcCCCeEEEEEecCCc
Q 040361 345 QGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPE-ECFLAGTKDGCLLVYSIENRR 398 (413)
Q Consensus 345 dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~dg~i~vw~~~~~~ 398 (413)
-|.|++||+.++.++..-+-..++|-.-+-..+ +-+++....|.|.--.+++..
T Consensus 280 ~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~ 334 (365)
T 2xzh_A 280 YGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 334 (365)
T ss_dssp TSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEEEEEEECTTT
T ss_pred CcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCCEEEEEEECccc
Confidence 999999999999999777666667665555443 557777788888888877643
No 302
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.90 E-value=0.0055 Score=52.33 Aligned_cols=215 Identities=13% Similarity=0.073 Sum_probs=108.6
Q ss_pred CeEEEEEcCCCcEEEE--eecCCCeEEEEEECCCCCEEEEccCC-----CcEEEEEecccccc-ccccccceeecCCCce
Q 040361 156 NSFQVIALNDGRVVQS--IRQHRDVVSCVAVTTDGSILATGSYD-----TTVMVWEVIRARAP-EKRVRNMQIEAPRKDY 227 (413)
Q Consensus 156 ~~i~i~~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~s~d-----g~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~ 227 (413)
..+.+||..+.+.... +........++.+ ++..++.|+.+ ..+.+||..+.... +..+.
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~----------- 97 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVSL--HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVA----------- 97 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEEC-----------
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEEE--CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECC-----------
Confidence 3788999877654321 1111111122222 56777778765 35788887665400 11110
Q ss_pred eeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCC-----cEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEE
Q 040361 228 VIVETPFHILCGHDDIITCLYVSVELDIVISGSKDG-----TCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYG 302 (413)
Q Consensus 228 ~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 302 (413)
.+........++. .++++++.|+.++ .+.+||+.+.+-...-..+.. .....+...++++++.|
T Consensus 98 --------~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-r~~~~~~~~~~~iyv~G 166 (301)
T 2vpj_A 98 --------PMNVRRGLAGATT--LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTA-REGAGLVVASGVIYCLG 166 (301)
T ss_dssp --------CCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSC-CBSCEEEEETTEEEEEC
T ss_pred --------CCCCCccceeEEE--ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCC-cccceEEEECCEEEEEC
Confidence 0111111112222 2566777776543 588899887764443222221 11122222367777777
Q ss_pred CCC-----CeEEEEEeCCceeeeee---cCCceeEEEecCCCCEEEEeCCC-----CeEEEEECCCCceEE--EecCCCC
Q 040361 303 DDD-----LSLHLFSINGKHLASSE---SNGRLNCLELSACGQFLVCGGDQ-----GQIVVRSMNSLEVVR--RYSGVGK 367 (413)
Q Consensus 303 ~~d-----~~i~i~d~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~d-----g~i~v~d~~~~~~~~--~~~~~~~ 367 (413)
+.+ ..+.+||+....-.... ....-.+++. -++++++.|+.+ ..+.+||+.+.+-.. .+.....
T Consensus 167 G~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~ 245 (301)
T 2vpj_A 167 GYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL-LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRC 245 (301)
T ss_dssp CBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCB
T ss_pred CCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE-ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCccc
Confidence 654 46889998755443321 1111112222 267777787764 468999998764332 2221121
Q ss_pred cEEEEEEccCCeEE-EEcCC-----CeEEEEEecCC
Q 040361 368 IITSLAVTPEECFL-AGTKD-----GCLLVYSIENR 397 (413)
Q Consensus 368 ~v~~~~~~~~~~~l-~~~~d-----g~i~vw~~~~~ 397 (413)
....+.+ +++++ .|+.+ ..+.+||+++.
T Consensus 246 ~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 246 YVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp SCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred ceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 2222222 55554 56654 45788888764
No 303
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.87 E-value=0.008 Score=52.32 Aligned_cols=138 Identities=12% Similarity=0.125 Sum_probs=84.8
Q ss_pred CeEEEEEec--CCC-EEEEe-eC--CCcEEEEEccCC--e--EEEEEeCCCCCceeeEEEccCCcEEEEECC--------
Q 040361 243 IITCLYVSV--ELD-IVISG-SK--DGTCVFHTLREG--R--YVRSLCHPSGSALSKLAASRHGRIVLYGDD-------- 304 (413)
Q Consensus 243 ~i~~~~~~~--~~~-~l~s~-~~--dg~i~vwd~~~~--~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------- 304 (413)
....+.+.+ ++. +|+.+ .. +.+|.+|++... . .+..+....-...+.+.+.++|.+.++...
T Consensus 113 ~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~ 192 (355)
T 3sre_A 113 NPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLK 192 (355)
T ss_dssp CEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHH
T ss_pred eeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccc
Confidence 455666655 343 33333 22 467778777643 2 233444443456889999999998877641
Q ss_pred ---------CCeEEEEEeCCceeeeeecCCceeEEEecCCCCEEEEeC-CCCeEEEEECCC-Cce--EEEecCCCCcEEE
Q 040361 305 ---------DLSLHLFSINGKHLASSESNGRLNCLELSACGQFLVCGG-DQGQIVVRSMNS-LEV--VRRYSGVGKIITS 371 (413)
Q Consensus 305 ---------d~~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~v~d~~~-~~~--~~~~~~~~~~v~~ 371 (413)
.+.|+.+|.. +.......-...+.++|+||++.|+++. ..+.|+.|++.. ++. ...+ ...+....
T Consensus 193 ~~e~~~~~~~g~vyr~d~~-~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDG 270 (355)
T 3sre_A 193 SWEMHLGLAWSFVTYYSPN-DVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDN 270 (355)
T ss_dssp HHHHHTTCCCEEEEEECTT-CCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEE
T ss_pred cchhhccCCccEEEEEECC-eEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCce
Confidence 2456666653 2111222334578999999998777664 578999999863 332 2234 23466788
Q ss_pred EEEcc-CCeEEE
Q 040361 372 LAVTP-EECFLA 382 (413)
Q Consensus 372 ~~~~~-~~~~l~ 382 (413)
+++.+ +|.+.+
T Consensus 271 i~vD~e~G~lwv 282 (355)
T 3sre_A 271 ISVDPVTGDLWV 282 (355)
T ss_dssp EEECTTTCCEEE
T ss_pred EEEeCCCCcEEE
Confidence 99999 587665
No 304
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.81 E-value=0.0074 Score=51.58 Aligned_cols=213 Identities=12% Similarity=0.135 Sum_probs=105.7
Q ss_pred CeEEEEEcCCCcEEEE--eecCCCeEEEEEECCCCCEEEEccCCC-----cEEEEEeccccccccccccceeecCCCcee
Q 040361 156 NSFQVIALNDGRVVQS--IRQHRDVVSCVAVTTDGSILATGSYDT-----TVMVWEVIRARAPEKRVRNMQIEAPRKDYV 228 (413)
Q Consensus 156 ~~i~i~~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~s~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (413)
..+.+||..+.+.... +......-..+.+ ++..++.|+.++ .+.+||..+.+.. .+
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~--~~------------- 92 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWT--SV------------- 92 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEE--EE-------------
T ss_pred CcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCcee--eC-------------
Confidence 4688899887654332 1111111112222 667778887553 4777777655411 11
Q ss_pred eecCceeeeecCCCCeEEEEEecCCCEEEEeeCCC-----cEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEEC
Q 040361 229 IVETPFHILCGHDDIITCLYVSVELDIVISGSKDG-----TCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGD 303 (413)
Q Consensus 229 ~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 303 (413)
..+........++. -++.+++.|+.++ .+.+||+.+.+-...-..+.. .....+..-++++++.|+
T Consensus 93 ------~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-r~~~~~~~~~~~iyv~GG 163 (302)
T 2xn4_A 93 ------ANMRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTR-RSSVGVGVVGGLLYAVGG 163 (302)
T ss_dssp ------CCCSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSC-CBSCEEEEETTEEEEECC
T ss_pred ------CCCCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCc-ccCceEEEECCEEEEEeC
Confidence 00111111111222 2566777777553 477888877764443222211 111122223667777776
Q ss_pred CC-------CeEEEEEeCCceeeeee---cCCceeEEEecCCCCEEEEeCCC-----CeEEEEECCCCceE--EEecCCC
Q 040361 304 DD-------LSLHLFSINGKHLASSE---SNGRLNCLELSACGQFLVCGGDQ-----GQIVVRSMNSLEVV--RRYSGVG 366 (413)
Q Consensus 304 ~d-------~~i~i~d~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~d-----g~i~v~d~~~~~~~--~~~~~~~ 366 (413)
.+ ..+.+||+....-.... ....-.+++. -++++++.|+.+ ..+.+||..+.+-. ..+....
T Consensus 164 ~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r 242 (302)
T 2xn4_A 164 YDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCR 242 (302)
T ss_dssp EETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCC
T ss_pred CCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEE-ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCcc
Confidence 42 35888998755433321 1111112222 267778887764 36899999875432 2222111
Q ss_pred CcEEEEEEccCCeEE-EEcCCC-----eEEEEEecCC
Q 040361 367 KIITSLAVTPEECFL-AGTKDG-----CLLVYSIENR 397 (413)
Q Consensus 367 ~~v~~~~~~~~~~~l-~~~~dg-----~i~vw~~~~~ 397 (413)
..-. ++.. +++++ .|+.++ .+.+||+++.
T Consensus 243 ~~~~-~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 243 RNAG-VCAV-NGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp BSCE-EEEE-TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred ccCe-EEEE-CCEEEEECCcCCCcccccEEEEcCCCC
Confidence 1112 2222 45544 566543 4888988765
No 305
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.79 E-value=0.016 Score=51.08 Aligned_cols=229 Identities=11% Similarity=0.115 Sum_probs=144.1
Q ss_pred EEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEecccccccccccc
Q 040361 138 TTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRN 217 (413)
Q Consensus 138 ~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~ 217 (413)
++..+|..+.++.=+ ...+.|+|+++.+.++.+.-.. .|.-=.|-.+ +.|+-.+ +..|.-|+++....
T Consensus 70 sAIMnP~~~iiALra--g~~lQiFnle~K~klks~~~~e-~VvfWkWis~-~~l~lVT-~taVyHWsi~~~s~------- 137 (494)
T 1bpo_A 70 SAIMNPASKVIALKA--GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISL-NTVALVT-DNAVYHWSMEGESQ------- 137 (494)
T ss_dssp EEEECSSSSCEEEEE--TTEEEEEETTTTEEEEEEECSS-CCCEEEEEET-TEEEEEC-SSEEEEEESSSSCC-------
T ss_pred eeeeCCCCcEEEEec--CCeEEEEchHHhhhhcceecCC-CceEEEecCC-CeEEEEc-CCeeEEecccCCCC-------
Confidence 344577777666644 7899999999999888887544 4444455433 3444333 36799999976432
Q ss_pred ceeecCCCceeeecCceeeeecCC----CCeEEEEEecCCCEEEEee-------CCCcEEEEEccCCeEEEEEeCCCCCc
Q 040361 218 MQIEAPRKDYVIVETPFHILCGHD----DIITCLYVSVELDIVISGS-------KDGTCVFHTLREGRYVRSLCHPSGSA 286 (413)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~h~----~~i~~~~~~~~~~~l~s~~-------~dg~i~vwd~~~~~~~~~~~~~~~~~ 286 (413)
|...+..|. ..|.....+++.++++..+ -.|.+.+|..+.+. .+.+++|.
T Consensus 138 ---------------P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGha--- 198 (494)
T 1bpo_A 138 ---------------PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHA--- 198 (494)
T ss_dssp ---------------CEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECCSE---
T ss_pred ---------------chhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchheeee---
Confidence 445555443 4566777788888766332 24678888876543 33344331
Q ss_pred eeeEEEccCC-----cEEEEECC---CCeEEEEEeCCc---------eeee--e---ecCCceeEEEecCCCCEEEEeCC
Q 040361 287 LSKLAASRHG-----RIVLYGDD---DLSLHLFSINGK---------HLAS--S---ESNGRLNCLELSACGQFLVCGGD 344 (413)
Q Consensus 287 v~~~~~~~~~-----~~l~~~~~---d~~i~i~d~~~~---------~~~~--~---~~~~~i~~~~~s~~~~~l~~~~~ 344 (413)
..-..+-.+| .+++.+.. .+.+++.++... +... . ....-..++..++....+..-+.
T Consensus 199 a~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK 278 (494)
T 1bpo_A 199 ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK 278 (494)
T ss_dssp EEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEET
T ss_pred eeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEec
Confidence 1111221111 23333332 268888888421 1111 1 12345678889988889999999
Q ss_pred CCeEEEEECCCCceEEEecCCCCcEEEEEEccC-CeEEEEcCCCeEEEEEecCC
Q 040361 345 QGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPE-ECFLAGTKDGCLLVYSIENR 397 (413)
Q Consensus 345 dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~dg~i~vw~~~~~ 397 (413)
-|.|++||+.++.++..-+-..++|-..+...+ +-+++....|.|.--.+++.
T Consensus 279 ~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 279 YGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp TSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred CceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence 999999999999998766656666655555444 55777778888887777764
No 306
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.79 E-value=0.0096 Score=50.95 Aligned_cols=223 Identities=14% Similarity=0.082 Sum_probs=113.6
Q ss_pred CEEEEeecC--CCeEEEEEcCCCcEEEE--eecCCCeEEEEEECCCCCEEEEccCC----CcEEEEEecccccccccccc
Q 040361 146 NFLITCGNW--ENSFQVIALNDGRVVQS--IRQHRDVVSCVAVTTDGSILATGSYD----TTVMVWEVIRARAPEKRVRN 217 (413)
Q Consensus 146 ~~l~~~g~~--d~~i~i~~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~s~d----g~i~iw~~~~~~~~~~~~~~ 217 (413)
+.+++.|.. ...+.+||..+++-... +......-.++.+ ++..++.|+.+ ..+.+||..+.... .
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~--~--- 84 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWY--S--- 84 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEE--E---
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEE--E---
Confidence 444444543 35788999887654322 1111111222222 56777888765 55777777665411 0
Q ss_pred ceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCC------CcEEEEEccCCeEEEEEeCCCCCceeeEE
Q 040361 218 MQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKD------GTCVFHTLREGRYVRSLCHPSGSALSKLA 291 (413)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~~v~~~~ 291 (413)
+..+........++. -++++++.|+.+ ..+.+||..+.+-...-..+.. .....+
T Consensus 85 ----------------~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-r~~~~~ 145 (306)
T 3ii7_A 85 ----------------KLGPPTPRDSLAACA--AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQ-RCSHGM 145 (306)
T ss_dssp ----------------EECCSSCCBSCEEEE--ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSC-CBSCEE
T ss_pred ----------------CCCCCccccceeEEE--ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCC-cceeEE
Confidence 011111111112222 256677777765 4588999988765443222211 111122
Q ss_pred EccCCcEEEEECC---------CCeEEEEEeCCceeeeee---cCCceeEEEecCCCCEEEEeCCC-----CeEEEEECC
Q 040361 292 ASRHGRIVLYGDD---------DLSLHLFSINGKHLASSE---SNGRLNCLELSACGQFLVCGGDQ-----GQIVVRSMN 354 (413)
Q Consensus 292 ~~~~~~~l~~~~~---------d~~i~i~d~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~d-----g~i~v~d~~ 354 (413)
..-++++++.|+. -..+.+||+....-.... ....-.+++.. ++++++.|+.+ ..+.+||+.
T Consensus 146 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~ 224 (306)
T 3ii7_A 146 VEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIK 224 (306)
T ss_dssp EEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETT
T ss_pred EEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCC
Confidence 2236677777753 345889998865433321 11111122222 67777777654 368899998
Q ss_pred CCceE--EEecCCCCcEEEEEEccCCeEE-EEcCC-----CeEEEEEecCC
Q 040361 355 SLEVV--RRYSGVGKIITSLAVTPEECFL-AGTKD-----GCLLVYSIENR 397 (413)
Q Consensus 355 ~~~~~--~~~~~~~~~v~~~~~~~~~~~l-~~~~d-----g~i~vw~~~~~ 397 (413)
+.+-. ..+.........+.+ +++++ .|+.+ ..+.+||+++.
T Consensus 225 ~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 225 LNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp TTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred CCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 75432 222222222233333 45544 57644 46888888775
No 307
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.76 E-value=0.018 Score=50.46 Aligned_cols=225 Identities=12% Similarity=0.091 Sum_probs=121.1
Q ss_pred eeEEEEecCCCCEEEEeecCCCeEEEEEcCCCc-EEEEee---cCCCeEEEEEECCC---CCEEEEccC----C----Cc
Q 040361 135 QCFTTMQTPSENFLITCGNWENSFQVIALNDGR-VVQSIR---QHRDVVSCVAVTTD---GSILATGSY----D----TT 199 (413)
Q Consensus 135 ~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~-~~~~~~---~h~~~v~~~~~~~~---~~~l~s~s~----d----g~ 199 (413)
....+++.|+|+.+++ ..+|.|++++ .+++ .+..+. ........|+++|+ +..|+.+.. + ..
T Consensus 30 ~P~~ia~~pdG~l~V~--e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 30 VPWSIAPLGGGRYLVT--ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp CEEEEEEEETTEEEEE--ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCeEEEEcCCCeEEEE--eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 3467788899875443 3369999997 4555 222221 12356889999997 445544432 2 45
Q ss_pred EEEEEeccccccccccccceeecCCCceeeecCceeeee---cCCCCeEEEEEecCCCEEEEeeC-------------CC
Q 040361 200 VMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILC---GHDDIITCLYVSVELDIVISGSK-------------DG 263 (413)
Q Consensus 200 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~i~~~~~~~~~~~l~s~~~-------------dg 263 (413)
|..|+......... .. . ..+..+. .|. ...++|.|++.+.++.+. .|
T Consensus 107 v~r~~~~~~~~~~~---~~-------~-----~l~~~~~~~~~h~--~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G 169 (354)
T 3a9g_A 107 VIRGRLDGSTFKLK---EV-------K-----TLIDGIPGAYIHN--GGRIRFGPDGMLYITTGDAADPRLAQDLSSLAG 169 (354)
T ss_dssp EEEEEECSSSCCEE---EE-------E-----EEEEEEECCSSCC--CCCEEECTTSCEEEECCCTTCGGGGTCTTCCSS
T ss_pred EEEEEECCCCcCcC---cc-------E-----EEEEcCCCCCCcC--CceEEECCCCcEEEEECCCCCCccccCCCCCCe
Confidence 66666544310000 00 0 0011111 232 357899999987776442 23
Q ss_pred cEEEEEccCCe----------EEEEEeCCCCCceeeEEEcc-CCcEEEEECCCC---eEEEEEeCCc-------------
Q 040361 264 TCVFHTLREGR----------YVRSLCHPSGSALSKLAASR-HGRIVLYGDDDL---SLHLFSINGK------------- 316 (413)
Q Consensus 264 ~i~vwd~~~~~----------~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~---~i~i~d~~~~------------- 316 (413)
.|.-++.. ++ .+... ... ....++|+| ++.++++-.... .|.+....+.
T Consensus 170 ~I~ri~~d-G~~p~~npf~~~~i~a~--G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~ 245 (354)
T 3a9g_A 170 KILRVDEE-GRPPADNPFPNSPIWSY--GHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRG 245 (354)
T ss_dssp EEEEECTT-SCCCTTSSSTTCCEEEE--CCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCT
T ss_pred EEEEEcCC-CCCCCCCCCCCCcEEEE--ccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCC
Confidence 45544443 22 12211 111 356799999 676666544322 2433321110
Q ss_pred ----eeeee-ecCCceeEEEec-------CCCCEEEEeCCCCeEEEEECCCC-ceE--EEec-CCCCcEEEEEEccCCeE
Q 040361 317 ----HLASS-ESNGRLNCLELS-------ACGQFLVCGGDQGQIVVRSMNSL-EVV--RRYS-GVGKIITSLAVTPEECF 380 (413)
Q Consensus 317 ----~~~~~-~~~~~i~~~~~s-------~~~~~l~~~~~dg~i~v~d~~~~-~~~--~~~~-~~~~~v~~~~~~~~~~~ 380 (413)
.+... ........++|. .+|.++++.-..+.|...++... +.. ..+. +....+..+++.|||.+
T Consensus 246 ~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~l 325 (354)
T 3a9g_A 246 EFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGI 325 (354)
T ss_dssp TSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCE
T ss_pred CCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcE
Confidence 01111 123356778873 56777777777788999888753 332 2332 22457899999999865
Q ss_pred EEE
Q 040361 381 LAG 383 (413)
Q Consensus 381 l~~ 383 (413)
..+
T Consensus 326 yv~ 328 (354)
T 3a9g_A 326 LIS 328 (354)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 308
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.66 E-value=0.0042 Score=56.58 Aligned_cols=154 Identities=8% Similarity=0.050 Sum_probs=97.2
Q ss_pred CeEEEEEecC--CCEEEEeeCCCcEEEEEccCCeEEEEEeCCC--CCceeeEEE-------ccCCcEEEEECCCC-----
Q 040361 243 IITCLYVSVE--LDIVISGSKDGTCVFHTLREGRYVRSLCHPS--GSALSKLAA-------SRHGRIVLYGDDDL----- 306 (413)
Q Consensus 243 ~i~~~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~--~~~v~~~~~-------~~~~~~l~~~~~d~----- 306 (413)
....|+|+|. ++++++....+.|++.|+..+.......... ......++| +++++.|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 4578899983 4445554445678899988777665443321 125788999 99998666654443
Q ss_pred --eEEEEEeCC--cee-----eeeecCCceeEEEecCC-CCEEEEeCCCCeEEEEECC-------CCce-----------
Q 040361 307 --SLHLFSING--KHL-----ASSESNGRLNCLELSAC-GQFLVCGGDQGQIVVRSMN-------SLEV----------- 358 (413)
Q Consensus 307 --~i~i~d~~~--~~~-----~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~v~d~~-------~~~~----------- 358 (413)
.+.+++... ... ...........++++|+ +.++++-..++.|+.+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~ 299 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNT 299 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred CceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccc
Confidence 366665432 221 11111234567889994 5666677788899999987 4543
Q ss_pred EEE-ec-CCCCcEEEEEEccCCe--EEEEcCCCeEEEEEecC
Q 040361 359 VRR-YS-GVGKIITSLAVTPEEC--FLAGTKDGCLLVYSIEN 396 (413)
Q Consensus 359 ~~~-~~-~~~~~v~~~~~~~~~~--~l~~~~dg~i~vw~~~~ 396 (413)
... +. ........++|+|+|. |++-.....|+.++...
T Consensus 300 ~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg 341 (496)
T 3kya_A 300 FKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDE 341 (496)
T ss_dssp EEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred cceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCC
Confidence 112 11 2234568999999986 45666778898877654
No 309
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.65 E-value=0.03 Score=54.77 Aligned_cols=227 Identities=13% Similarity=0.088 Sum_probs=133.4
Q ss_pred cceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEee----cCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccc
Q 040361 133 GSQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIR----QHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRA 208 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~----~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~ 208 (413)
...|.++....+|...+.+ .+| +..||-.. ...+. .....|.++.-..++ .|..|+.+| +..||..+.
T Consensus 21 ~n~V~~I~qD~~G~lWigT--~~G-L~ryDG~~---~~~~~~~~~~~~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~ 92 (758)
T 3ott_A 21 ASVVSCFLQDSEGLIWIGS--NKG-LFSYDGYS---TQQHFTYGENNNTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRAD 92 (758)
T ss_dssp CCCEEEEEECTTSCEEEEE--SSC-EEEECSSC---EEECSCTTSTTSSCEEEEEEETTT-EEEEEETTE-EEEEETTTT
T ss_pred cceEEEEEECCCCCEEEEE--CCC-ccccCCCc---eEEEEccCCCCCceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCC
Confidence 3456777777778777653 355 55666322 22221 123568888777666 566666665 778887654
Q ss_pred cccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEe---CCCCC
Q 040361 209 RAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLC---HPSGS 285 (413)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~---~~~~~ 285 (413)
.... ........|.++.. .++ .+..++.+ -+..+|..+++...-.. .....
T Consensus 93 ~f~~-----------------------~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~ 146 (758)
T 3ott_A 93 RYEQ-----------------------PETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNN 146 (758)
T ss_dssp EECC-----------------------CSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEEEECHHHHCCSCS
T ss_pred EEEC-----------------------cccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCC
Confidence 3100 00011234666654 344 45555555 57888987665432211 11134
Q ss_pred ceeeEEEccCCcEEEEECCCCeEEEEEeCCceeeeeec-------CCceeEEEecCCCCEEEEeCCCCeEEEEECCCCce
Q 040361 286 ALSKLAASRHGRIVLYGDDDLSLHLFSINGKHLASSES-------NGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEV 358 (413)
Q Consensus 286 ~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-------~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~ 358 (413)
.|.++....++.+.+.. .+ -|..|+........... ...|.++...+++..|..|+. +-+..+|..+++.
T Consensus 147 ~i~~i~~d~~g~lWigt-~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~ 223 (758)
T 3ott_A 147 TIYSIIRTKDNQIYVGT-YN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQI 223 (758)
T ss_dssp CEEEEEECTTCCEEEEE-TT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEE
T ss_pred eEEEEEEcCCCCEEEEe-CC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeE
Confidence 57888888788766644 33 57788877554433211 224778888777776666664 4688899877654
Q ss_pred EEEecCCCCcEEEEEEccCCeEEEEcCCCeEEEEEecCC
Q 040361 359 VRRYSGVGKIITSLAVTPEECFLAGTKDGCLLVYSIENR 397 (413)
Q Consensus 359 ~~~~~~~~~~v~~~~~~~~~~~l~~~~dg~i~vw~~~~~ 397 (413)
..........|.++....+|.+..|+.+ -+.+++..++
T Consensus 224 ~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~~~~~~ 261 (758)
T 3ott_A 224 KQTEAFHNNSIKSLALDGNGDLLAGTDN-GLYVYHNDTT 261 (758)
T ss_dssp EEEEEEEEEEEEEEEECTTCCEEEEETT-EEEEECCTTS
T ss_pred EeccCCCCCeEEEEEEcCCCCEEEEeCC-ceeEEecCCC
Confidence 3211112345888888888888877754 4777877654
No 310
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.59 E-value=0.01 Score=52.02 Aligned_cols=140 Identities=9% Similarity=0.040 Sum_probs=66.4
Q ss_pred CcEEEEEccCCeEEEEEeCCCCCce-eeEEEccCCcEEEEECC------CCeEEEEEe--CCceeeeee---cC-CceeE
Q 040361 263 GTCVFHTLREGRYVRSLCHPSGSAL-SKLAASRHGRIVLYGDD------DLSLHLFSI--NGKHLASSE---SN-GRLNC 329 (413)
Q Consensus 263 g~i~vwd~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~------d~~i~i~d~--~~~~~~~~~---~~-~~i~~ 329 (413)
..+.+||..+.+-...-..+....- .+++ .-++++++.|+. ...+..||+ ....-.... .. .....
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~-~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~ 246 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVV-NKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGG 246 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEE-EETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSC
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEE-EECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccc
Confidence 4688999987765443332221111 2222 235667777663 235777876 333222211 11 11111
Q ss_pred EEecCCCCEEEEeCCC----------------------CeEEEEECCCCc--eEEEecCCCCcEEEEEEccCCeEE-EEc
Q 040361 330 LELSACGQFLVCGGDQ----------------------GQIVVRSMNSLE--VVRRYSGVGKIITSLAVTPEECFL-AGT 384 (413)
Q Consensus 330 ~~~s~~~~~l~~~~~d----------------------g~i~v~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l-~~~ 384 (413)
.+...++++++.|+.+ ..+.+||+.+.+ .+..+......-.++. -+++++ .|+
T Consensus 247 ~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG 324 (357)
T 2uvk_A 247 FAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLP--WNNSLLIIGG 324 (357)
T ss_dssp EEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEE--ETTEEEEEEE
T ss_pred eEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEE--eCCEEEEEee
Confidence 1223367777777632 257789987643 4444443222222222 245544 566
Q ss_pred CCC------eEEEEEecCCcccccccc
Q 040361 385 KDG------CLLVYSIENRRTSLPRNV 405 (413)
Q Consensus 385 ~dg------~i~vw~~~~~~~~~~~~~ 405 (413)
.++ .|.++++++++-.....+
T Consensus 325 ~~~~~~~~~~v~~l~~~~~~~~~~~~~ 351 (357)
T 2uvk_A 325 ETAGGKAVTDSVLITVKDNKVTVQNLE 351 (357)
T ss_dssp ECGGGCEEEEEEEEEC-CCSCEEEC--
T ss_pred eCCCCCEeeeEEEEEEcCcEeEeeecc
Confidence 442 366678888766554443
No 311
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.57 E-value=0.019 Score=49.12 Aligned_cols=142 Identities=8% Similarity=-0.013 Sum_probs=74.9
Q ss_pred CCCEEEEeeCC-----CcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCC-----CeEEEEEeCCceeeee
Q 040361 252 ELDIVISGSKD-----GTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDD-----LSLHLFSINGKHLASS 321 (413)
Q Consensus 252 ~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~ 321 (413)
++++++.|+.+ ..+.+||+.+.+-...-..+....-.+++ .-++++++.|+.+ ..+.+||+....-...
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 199 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVA-VLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMI 199 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTEEEEECCBCSSCBCCCEEEEETTTTEEEEC
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEE-EECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeC
Confidence 56677776644 35888998877644322222111111222 2267777777654 4588899875543332
Q ss_pred e---cCCceeEEEecCCCCEEEEeCCC-----CeEEEEECCCCceEE--EecCCCCcEEEEEEccCCeEE-EEcCC----
Q 040361 322 E---SNGRLNCLELSACGQFLVCGGDQ-----GQIVVRSMNSLEVVR--RYSGVGKIITSLAVTPEECFL-AGTKD---- 386 (413)
Q Consensus 322 ~---~~~~i~~~~~s~~~~~l~~~~~d-----g~i~v~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l-~~~~d---- 386 (413)
. ....-.+++.. ++++++.|+.+ ..+.+||+.+.+-.. .+........ ++.. +++++ .|+.+
T Consensus 200 ~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~-~~~~-~~~i~v~GG~~~~~~ 276 (308)
T 1zgk_A 200 TAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALG-ITVH-QGRIYVLGGYDGHTF 276 (308)
T ss_dssp CCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCE-EEEE-TTEEEEECCBCSSCB
T ss_pred CCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceE-EEEE-CCEEEEEcCcCCCcc
Confidence 1 11111122222 67777887764 568999998754322 2221111222 2223 45554 56643
Q ss_pred -CeEEEEEecCC
Q 040361 387 -GCLLVYSIENR 397 (413)
Q Consensus 387 -g~i~vw~~~~~ 397 (413)
..+.+||+++.
T Consensus 277 ~~~v~~yd~~~~ 288 (308)
T 1zgk_A 277 LDSVECYDPDTD 288 (308)
T ss_dssp CCEEEEEETTTT
T ss_pred cceEEEEcCCCC
Confidence 45788888765
No 312
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.54 E-value=0.037 Score=48.39 Aligned_cols=199 Identities=13% Similarity=0.096 Sum_probs=106.7
Q ss_pred CeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecC---C
Q 040361 177 DVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVE---L 253 (413)
Q Consensus 177 ~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~---~ 253 (413)
.....++|.|+|+++++ ..+|.|.+++ ++.. ..+.. +..+.........++++|+ +
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~--~~~~~----------------~~v~~~g~~~p~gia~~pdf~~~ 89 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRL--STYAE----------------LSVYHRGESGLLGLALHPRFPQE 89 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEE--EEEEE----------------CCCCCSTTCSEEEEEECTTTTTS
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCc--cEeec----------------ceEeecCCCCceeEEECCCCCCC
Confidence 45678999999986555 5568888887 3320 00000 0011122356789999998 4
Q ss_pred CEEEEe-eCC-----CcEEEEEccCCe-----EEE-EEeC--CCCCceeeEEEccCCcEEEEECC-------------CC
Q 040361 254 DIVISG-SKD-----GTCVFHTLREGR-----YVR-SLCH--PSGSALSKLAASRHGRIVLYGDD-------------DL 306 (413)
Q Consensus 254 ~~l~s~-~~d-----g~i~vwd~~~~~-----~~~-~~~~--~~~~~v~~~~~~~~~~~l~~~~~-------------d~ 306 (413)
..|..+ ... ..|..++...+. .+. .+.. ........++|.|+|.++++.+. .+
T Consensus 90 g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g 169 (352)
T 2ism_A 90 PYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGG 169 (352)
T ss_dssp CEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSS
T ss_pred CEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCce
Confidence 444443 322 678888876432 111 1321 11123468999999976666432 25
Q ss_pred eEEEEEeCCce-------------eeee-ecCCceeEEEecC-CCCEEEEeCCCCe--------EEEEECCC--------
Q 040361 307 SLHLFSINGKH-------------LASS-ESNGRLNCLELSA-CGQFLVCGGDQGQ--------IVVRSMNS-------- 355 (413)
Q Consensus 307 ~i~i~d~~~~~-------------~~~~-~~~~~i~~~~~s~-~~~~l~~~~~dg~--------i~v~d~~~-------- 355 (413)
.|..++.++.. .... ..-.....++|+| +|+++++-...+. |.+.....
T Consensus 170 ~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~ 249 (352)
T 2ism_A 170 KILRLTPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVV 249 (352)
T ss_dssp EEEEECTTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCC
T ss_pred EEEEEcCCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCccc
Confidence 67777766521 1111 1123467789999 5665555332222 33322111
Q ss_pred --------CceEEEecCCCCcEEEEEEccCCeEE-EEcCCCeEEEEEecCCc
Q 040361 356 --------LEVVRRYSGVGKIITSLAVTPEECFL-AGTKDGCLLVYSIENRR 398 (413)
Q Consensus 356 --------~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~dg~i~vw~~~~~~ 398 (413)
..++..+. +......++|. +|.++ +.-..+.|...+++...
T Consensus 250 g~~~~~~~~~p~~~~~-~~~ap~G~~~~-~G~l~v~~~~~~~v~~v~~~~~~ 299 (352)
T 2ism_A 250 GRGNDPRYRDPLYFWP-QGFPPGNLAFF-RGDLYVAGLRGQALLRLVLEGER 299 (352)
T ss_dssp SCCCCTTSCCCSEECT-TCCCEEEEEEE-TTEEEEEETTTTEEEEEEEEEET
T ss_pred CCCCCCCCcCCeEecC-CCCCCcceEEE-CCEEEEEECCCCEEEEEEECCCC
Confidence 01222332 23356778884 56555 45566778888776543
No 313
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.31 E-value=0.074 Score=46.50 Aligned_cols=245 Identities=10% Similarity=0.019 Sum_probs=121.8
Q ss_pred eeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEee-------cCCCeEEEEEECCC---CCEEEEcc-C-------
Q 040361 135 QCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIR-------QHRDVVSCVAVTTD---GSILATGS-Y------- 196 (413)
Q Consensus 135 ~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~-------~h~~~v~~~~~~~~---~~~l~s~s-~------- 196 (413)
....+++.|+|+.++++- ..|.|++++. +++....+. ........++++|+ +..|+.+. .
T Consensus 19 ~P~~i~~~pdG~~l~V~e-~~G~i~~~~~-~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITL-RGGELRHWQA-GKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SEEEEEECSTTCCEEEEE-TTTEEEEEET-TTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CcEEEEEcCCCCEEEEEe-CCceEEEEeC-CCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 457788999998333333 4799999985 343221111 12345789999996 44444432 2
Q ss_pred CCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeC-------------CC
Q 040361 197 DTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSK-------------DG 263 (413)
Q Consensus 197 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~-------------dg 263 (413)
...|..|+............ .++...+...-..|. -..++|.|++.+.++.+. .|
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~----------~i~~~~p~~~~~~h~--~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g 164 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFR----------TVFRQMPKLSTGNHF--GGRLVFDGKGYLFIALGENNQRPTAQDLDKLQG 164 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEE----------EEEECSSCCBSSSCC--CCCEEECSSSEEEEEECCTTCGGGGGCTTSCTT
T ss_pred eeEEEEEEECCCCCCCCceE----------EEEEECCCCCCCccc--CccEEECCCCcEEEEECCCCCCCccCCCCCCCe
Confidence 22455555543210000000 000000000011232 256999999976665433 24
Q ss_pred cEEEEEccCCe------------EEEEEeCCCCCceeeEEEcc-CCcEEEEECC-CC--eEEEEEeCCc-----------
Q 040361 264 TCVFHTLREGR------------YVRSLCHPSGSALSKLAASR-HGRIVLYGDD-DL--SLHLFSINGK----------- 316 (413)
Q Consensus 264 ~i~vwd~~~~~------------~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~-d~--~i~i~d~~~~----------- 316 (413)
.|.-+|....- ....+.... .....++|+| ++.++++-.. ++ .|.+....+.
T Consensus 165 ~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~ 243 (353)
T 2g8s_A 165 KLVRLTDQGEIPDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGIN 243 (353)
T ss_dssp EEEEEETTSCCCTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBC
T ss_pred EEEEECCCCCCCCCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCC
Confidence 56555653210 111111111 1367789999 5655544221 11 2222111000
Q ss_pred -------------------eeeeeecCCceeEEEecC-------CCCEEEEeCCCCeEEEEECCCCceEEE--e-cCCCC
Q 040361 317 -------------------HLASSESNGRLNCLELSA-------CGQFLVCGGDQGQIVVRSMNSLEVVRR--Y-SGVGK 367 (413)
Q Consensus 317 -------------------~~~~~~~~~~i~~~~~s~-------~~~~l~~~~~dg~i~v~d~~~~~~~~~--~-~~~~~ 367 (413)
.+....+...+..++|.. +|+++++.-..+.|...++..++.+.. + .....
T Consensus 244 ~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 323 (353)
T 2g8s_A 244 YSGFKIPEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQ 323 (353)
T ss_dssp TTSSCCTTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCC
T ss_pred CCCCccCcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCC
Confidence 000111223456677753 467777777788888888876544322 2 22235
Q ss_pred cEEEEEEccCCeEEEEcCCCeEEEEEe
Q 040361 368 IITSLAVTPEECFLAGTKDGCLLVYSI 394 (413)
Q Consensus 368 ~v~~~~~~~~~~~l~~~~dg~i~vw~~ 394 (413)
.+..+++.|||.+..++.+..=+||.+
T Consensus 324 rp~~v~~~pdG~lyv~td~~~g~I~ri 350 (353)
T 2g8s_A 324 RIRDVRTGPDGYLYVLTDESSGELLKV 350 (353)
T ss_dssp CEEEEEECTTSCEEEEECSTTEEEEEE
T ss_pred ceeEEEECCCCcEEEEEeCCCCEEEEE
Confidence 799999999987665433222245554
No 314
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.27 E-value=0.045 Score=46.57 Aligned_cols=186 Identities=11% Similarity=0.075 Sum_probs=95.6
Q ss_pred CCCEEEEeecC----CCeEEEEEcCCCc---EEEE--eecCCCeEEEEEECCCCCEEEEccCCC-----cEEEEEecccc
Q 040361 144 SENFLITCGNW----ENSFQVIALNDGR---VVQS--IRQHRDVVSCVAVTTDGSILATGSYDT-----TVMVWEVIRAR 209 (413)
Q Consensus 144 ~~~~l~~~g~~----d~~i~i~~~~~~~---~~~~--~~~h~~~v~~~~~~~~~~~l~s~s~dg-----~i~iw~~~~~~ 209 (413)
++..+++.|.. ...+.+||..+.+ .... +........++.+ +++.++.|+.++ .+.+||+.+..
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~ 139 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQ 139 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCe
Confidence 45555554432 1468999988766 3322 2111112222223 567777777543 46777766544
Q ss_pred ccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCC-----CcEEEEEccCCeEEEEEeCCCC
Q 040361 210 APEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKD-----GTCVFHTLREGRYVRSLCHPSG 284 (413)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~ 284 (413)
.. . +..+......-.++. .++++++.|+.+ ..+.+||+.+.+-...-..+..
T Consensus 140 W~--~-------------------~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~ 196 (301)
T 2vpj_A 140 WS--M-------------------LGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATK 196 (301)
T ss_dssp EE--E-------------------EEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSC
T ss_pred EE--E-------------------CCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcc
Confidence 11 0 111111111111222 256677777755 4588999887765443222221
Q ss_pred CceeeEEEccCCcEEEEECCC-----CeEEEEEeCCceeeeee---cC-CceeEEEecCCCCEEEEeCCC-----CeEEE
Q 040361 285 SALSKLAASRHGRIVLYGDDD-----LSLHLFSINGKHLASSE---SN-GRLNCLELSACGQFLVCGGDQ-----GQIVV 350 (413)
Q Consensus 285 ~~v~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~---~~-~~i~~~~~s~~~~~l~~~~~d-----g~i~v 350 (413)
.....+..-++++++.|+.+ ..+.+||+....-.... .. .....+.+ ++++++.|+.+ ..+.+
T Consensus 197 -r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~ 273 (301)
T 2vpj_A 197 -RSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIEC 273 (301)
T ss_dssp -CBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEE
T ss_pred -cccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEE
Confidence 11122222366777777654 46899999865443321 11 11122222 67777787765 36788
Q ss_pred EECCCCc
Q 040361 351 RSMNSLE 357 (413)
Q Consensus 351 ~d~~~~~ 357 (413)
||..+.+
T Consensus 274 yd~~~~~ 280 (301)
T 2vpj_A 274 YDPIIDS 280 (301)
T ss_dssp EETTTTE
T ss_pred EcCCCCe
Confidence 8887643
No 315
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=97.20 E-value=0.0095 Score=47.36 Aligned_cols=156 Identities=9% Similarity=-0.046 Sum_probs=92.0
Q ss_pred CCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeE------EEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeC-
Q 040361 242 DIITCLYVSVELDIVISGSKDGTCVFHTLREGRY------VRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSIN- 314 (413)
Q Consensus 242 ~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~- 314 (413)
..+..++|+|++.+.+. .+|.+.-.+..+... -..+-...-.....+.|.++|.+.++ .||.|+-++..
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence 36779999999886666 677766655543111 11221100112477899999998888 56899888763
Q ss_pred -Cceee-----ee--ecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCc------eEEEec-CCCCcEEEEEEccCCe
Q 040361 315 -GKHLA-----SS--ESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLE------VVRRYS-GVGKIITSLAVTPEEC 379 (413)
Q Consensus 315 -~~~~~-----~~--~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~------~~~~~~-~~~~~v~~~~~~~~~~ 379 (413)
+..-. .. ..-..+..+.+.|+|.+.++. |+.++-....+.. ....+- ..-...+-+.|.+++.
T Consensus 117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~ 194 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGT 194 (236)
T ss_dssp STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSC
T ss_pred CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCc
Confidence 21110 00 111467999999999988887 7775433332211 011111 2223455577999998
Q ss_pred EEEEcCCCeEEEEEecCCccccccccc
Q 040361 380 FLAGTKDGCLLVYSIENRRTSLPRNVK 406 (413)
Q Consensus 380 ~l~~~~dg~i~vw~~~~~~~~~~~~~~ 406 (413)
+.+.. +| ++|.....+...+..+.
T Consensus 195 l~~v~-~g--~~Y~~~~p~~~~~~~~~ 218 (236)
T 1tl2_A 195 LFGVQ-GG--KFYEDYPPSYAYDNWLA 218 (236)
T ss_dssp EEEEE-TT--EEEEESCCCSTTCCHHH
T ss_pred EEEEe-CC--eEEecCCccccCcchhh
Confidence 88766 77 56676666555544433
No 316
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.20 E-value=0.085 Score=44.93 Aligned_cols=186 Identities=11% Similarity=0.092 Sum_probs=95.8
Q ss_pred CCCEEEEeecC---CCeEEEEEcCCCcEEEEe--ecCCCeEEEEEECCCCCEEEEccCC------CcEEEEEeccccccc
Q 040361 144 SENFLITCGNW---ENSFQVIALNDGRVVQSI--RQHRDVVSCVAVTTDGSILATGSYD------TTVMVWEVIRARAPE 212 (413)
Q Consensus 144 ~~~~l~~~g~~---d~~i~i~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~l~s~s~d------g~i~iw~~~~~~~~~ 212 (413)
++..+++.|.. -..+.+||..+++....- ........++.+ +++.++.|+.+ ..+.+||..+....
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~- 131 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWH- 131 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEE-
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceE-
Confidence 45555554431 257889998877544322 111111222223 66777888765 45778887665411
Q ss_pred cccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeC---------CCcEEEEEccCCeEEEEEeCCC
Q 040361 213 KRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSK---------DGTCVFHTLREGRYVRSLCHPS 283 (413)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~---------dg~i~vwd~~~~~~~~~~~~~~ 283 (413)
.+ ..+......-.++. -++++++.|+. -..+.+||+.+.+-...-..+.
T Consensus 132 -~~-------------------~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~ 189 (306)
T 3ii7_A 132 -TK-------------------PSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIE 189 (306)
T ss_dssp -EE-------------------CCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSS
T ss_pred -eC-------------------CCCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccc
Confidence 10 00000111111222 25566666654 3458899998876443322221
Q ss_pred CCceeeEEEccCCcEEEEECCC-----CeEEEEEeCCceeeeee---cC-CceeEEEecCCCCEEEEeCCC-----CeEE
Q 040361 284 GSALSKLAASRHGRIVLYGDDD-----LSLHLFSINGKHLASSE---SN-GRLNCLELSACGQFLVCGGDQ-----GQIV 349 (413)
Q Consensus 284 ~~~v~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~---~~-~~i~~~~~s~~~~~l~~~~~d-----g~i~ 349 (413)
. .....+..-++++++.|+.+ ..+.+||+....-.... .. ....++.+ ++++++.|+.+ ..+.
T Consensus 190 ~-r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~ 266 (306)
T 3ii7_A 190 A-RKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHIL 266 (306)
T ss_dssp C-CBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEE
T ss_pred h-hhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEE
Confidence 1 11122222366777777653 35888998765433321 11 11222333 67788888754 5688
Q ss_pred EEECCCCc
Q 040361 350 VRSMNSLE 357 (413)
Q Consensus 350 v~d~~~~~ 357 (413)
+||..+.+
T Consensus 267 ~yd~~~~~ 274 (306)
T 3ii7_A 267 EYNTETDK 274 (306)
T ss_dssp EEETTTTE
T ss_pred EEcCCCCe
Confidence 99987753
No 317
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.16 E-value=0.095 Score=44.87 Aligned_cols=184 Identities=10% Similarity=0.095 Sum_probs=92.5
Q ss_pred EEEEeecCCCeEEEEEcCCCcEEE-EeecCCCeEEEEEECCCCCEEEEccC----C---C----cEEEEEeccccccccc
Q 040361 147 FLITCGNWENSFQVIALNDGRVVQ-SIRQHRDVVSCVAVTTDGSILATGSY----D---T----TVMVWEVIRARAPEKR 214 (413)
Q Consensus 147 ~l~~~g~~d~~i~i~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~s~s~----d---g----~i~iw~~~~~~~~~~~ 214 (413)
.+++.|. ..+.+||..+++-.. .+..........+...++..++.|+. + . .+..||..+.+. ..
T Consensus 6 ~l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W--~~ 81 (315)
T 4asc_A 6 LIFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEW--LG 81 (315)
T ss_dssp EEEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEE--EE
T ss_pred EEEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeE--EE
Confidence 3444453 679999998877542 22111122222233347778888873 1 1 156666655431 11
Q ss_pred cccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCC--------CcEEEEEccCCeEEEEEeCCCCCc
Q 040361 215 VRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKD--------GTCVFHTLREGRYVRSLCHPSGSA 286 (413)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~d--------g~i~vwd~~~~~~~~~~~~~~~~~ 286 (413)
+..+ + .....| ..+.+ ++.+++.|+.+ ..+.+||..+.+-...-..+.. .
T Consensus 82 ~~~~--------------p-~~r~~~----~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-r 139 (315)
T 4asc_A 82 MPPL--------------P-SPRCLF----GLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYV-V 139 (315)
T ss_dssp CCCB--------------S-SCEESC----EEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSC-C
T ss_pred CCCC--------------C-cchhce----eEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCc-c
Confidence 1000 0 000111 11122 55666777642 3588999987754332222211 1
Q ss_pred eeeEEEccCCcEEEEECC-C-----CeEEEEEeCCceeeeee---cCCceeEEEecCCCCEEEEeCCCC-----eEEEEE
Q 040361 287 LSKLAASRHGRIVLYGDD-D-----LSLHLFSINGKHLASSE---SNGRLNCLELSACGQFLVCGGDQG-----QIVVRS 352 (413)
Q Consensus 287 v~~~~~~~~~~~l~~~~~-d-----~~i~i~d~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~dg-----~i~v~d 352 (413)
....+...++++++.|+. + ..+.+||+....-.... ....-.+++. -++++++.|+.++ .+.+||
T Consensus 140 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd 218 (315)
T 4asc_A 140 YGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATV-HDGRIIVAAGVTDTGLTSSAEVYS 218 (315)
T ss_dssp BSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEEEEECSSSEEEEEEEEE
T ss_pred cceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEE-ECCEEEEEeccCCCCccceEEEEE
Confidence 222223346677777765 2 46889998755433321 1111112222 2677777776544 588899
Q ss_pred CCCCc
Q 040361 353 MNSLE 357 (413)
Q Consensus 353 ~~~~~ 357 (413)
..+.+
T Consensus 219 ~~~~~ 223 (315)
T 4asc_A 219 ITDNK 223 (315)
T ss_dssp TTTTE
T ss_pred CCCCe
Confidence 98754
No 318
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=97.16 E-value=0.019 Score=49.58 Aligned_cols=192 Identities=11% Similarity=0.105 Sum_probs=99.1
Q ss_pred EEEeecCCCeEEEEEcCCCcEEEEeecC-CCeEEEEEEC--C-CCCEEEEc-cCCCcEEEEEeccccccccccccceeec
Q 040361 148 LITCGNWENSFQVIALNDGRVVQSIRQH-RDVVSCVAVT--T-DGSILATG-SYDTTVMVWEVIRARAPEKRVRNMQIEA 222 (413)
Q Consensus 148 l~~~g~~d~~i~i~~~~~~~~~~~~~~h-~~~v~~~~~~--~-~~~~l~s~-s~dg~i~iw~~~~~~~~~~~~~~~~~~~ 222 (413)
+++.++.||.|+-+|..+|+....++.. ..++....-. + ++..++.. +.||.|..++..++...... .
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~------~- 84 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPL------S- 84 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEE------E-
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeee------c-
Confidence 3444666999999999999999988754 1222221100 1 22334343 68999999987766421100 0
Q ss_pred CCCceeeecCceeeeecCCCCeEE---EEE-----ecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCc------ee
Q 040361 223 PRKDYVIVETPFHILCGHDDIITC---LYV-----SVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSA------LS 288 (413)
Q Consensus 223 ~~~~~~~~~~~~~~~~~h~~~i~~---~~~-----~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~------v~ 288 (413)
+..+. ...++.. ... ...+..+++|+.+|.+...|+++|+.+..+....... ..
T Consensus 85 -----------~~~lv-~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~ 152 (339)
T 2be1_A 85 -----------IRQLV-STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVD 152 (339)
T ss_dssp -----------HHHHH-TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------
T ss_pred -----------cccce-eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccc
Confidence 00000 1111111 000 0134578899999999999999999999987532111 00
Q ss_pred eEEEc-----cCCcEEEEECCCCeEEEEEeCCceeeee-----ec---CCce-eEEEecCCCCEEEEeCCCCeEEEEECC
Q 040361 289 KLAAS-----RHGRIVLYGDDDLSLHLFSINGKHLASS-----ES---NGRL-NCLELSACGQFLVCGGDQGQIVVRSMN 354 (413)
Q Consensus 289 ~~~~~-----~~~~~l~~~~~d~~i~i~d~~~~~~~~~-----~~---~~~i-~~~~~s~~~~~l~~~~~dg~i~v~d~~ 354 (413)
+.... ..+..++.+..+..+.+.+..++ .... .. ...+ ..-..+.|+.+ ++++.||.|.-+|..
T Consensus 153 ~~~~~d~~~d~~~~~v~ig~~~y~v~~~~~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~ 230 (339)
T 2be1_A 153 CSPEEKIKLQECENMIVIGKTIFELGIHSYDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLD 230 (339)
T ss_dssp ------------CCEEEEEEEEEECEECCTTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECST
T ss_pred cccccccccccCCCeEEEecceEEEEEECCCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECC
Confidence 11110 12345666555555555442221 1100 00 0000 00011234555 446778888888888
Q ss_pred CCceEE
Q 040361 355 SLEVVR 360 (413)
Q Consensus 355 ~~~~~~ 360 (413)
+++.+.
T Consensus 231 ~G~~~W 236 (339)
T 2be1_A 231 FRIARW 236 (339)
T ss_dssp TCCEEE
T ss_pred CCcEEE
Confidence 887765
No 319
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.13 E-value=0.096 Score=46.23 Aligned_cols=141 Identities=11% Similarity=0.111 Sum_probs=93.5
Q ss_pred EecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCC---CCceeeEEEccCCcEEEEECCCCeEEEEEeC-Cce-------
Q 040361 249 VSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPS---GSALSKLAASRHGRIVLYGDDDLSLHLFSIN-GKH------- 317 (413)
Q Consensus 249 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~------- 317 (413)
.+.++..++.+- ++.||.-++......+.+..+. -..+..+..+|+|.+|+..+. ..|.+..+. +..
T Consensus 28 ~~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~ 105 (452)
T 3pbp_A 28 SSQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSI 105 (452)
T ss_dssp EETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHH
T ss_pred EEcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCccccc
Confidence 344555555543 5778887877554555555542 236788999999999998865 478888876 211
Q ss_pred -----eeeee-------cCCceeEEEecCC---CCEEEEeCCCCeEEEEECCCCc--eEEEec---------CCCCcEEE
Q 040361 318 -----LASSE-------SNGRLNCLELSAC---GQFLVCGGDQGQIVVRSMNSLE--VVRRYS---------GVGKIITS 371 (413)
Q Consensus 318 -----~~~~~-------~~~~i~~~~~s~~---~~~l~~~~~dg~i~v~d~~~~~--~~~~~~---------~~~~~v~~ 371 (413)
..... ...+|..+.|+|- +..|++-..|+.|++||+.... +. .+. .....|.+
T Consensus 106 ~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S 184 (452)
T 3pbp_A 106 QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITD 184 (452)
T ss_dssp HHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEE
T ss_pred ccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEE
Confidence 11111 2467999999996 4689999999999999998522 22 222 22356889
Q ss_pred EEEccCCe-EEE--EcCCCeEEEE
Q 040361 372 LAVTPEEC-FLA--GTKDGCLLVY 392 (413)
Q Consensus 372 ~~~~~~~~-~l~--~~~dg~i~vw 392 (413)
++|.+++. +.+ ...+|.|+-.
T Consensus 185 ~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 185 LEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEECTTSSCEEEEECTTSCEEEEE
T ss_pred EEEcCCCcEEEEEecCCCCCEEEE
Confidence 99999863 223 4577777643
No 320
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.12 E-value=0.05 Score=46.29 Aligned_cols=187 Identities=12% Similarity=0.114 Sum_probs=93.5
Q ss_pred CCCEEEEeecCC----CeEEEEEcCCCcEEEEee--cCCCeEEEEEECCCCCEEEEccCCC-----cEEEEEeccccccc
Q 040361 144 SENFLITCGNWE----NSFQVIALNDGRVVQSIR--QHRDVVSCVAVTTDGSILATGSYDT-----TVMVWEVIRARAPE 212 (413)
Q Consensus 144 ~~~~l~~~g~~d----~~i~i~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~s~dg-----~i~iw~~~~~~~~~ 212 (413)
++..+++.|..+ ..+.+||..+.+-...-. .......++.+ ++..++.|+.++ .+.+||+.+...
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W-- 136 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEW-- 136 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEE--
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeE--
Confidence 455555544321 368889987765433221 11111222222 567777777653 366666655431
Q ss_pred cccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCC-------CcEEEEEccCCeEEEEEeCCCCC
Q 040361 213 KRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKD-------GTCVFHTLREGRYVRSLCHPSGS 285 (413)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~d-------g~i~vwd~~~~~~~~~~~~~~~~ 285 (413)
..+ ..+........++ . -++++++.|+.+ ..+.+||+.+.+-...-..+...
T Consensus 137 ~~~-------------------~~~p~~r~~~~~~-~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r 195 (302)
T 2xn4_A 137 FHV-------------------APMNTRRSSVGVG-V-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRR 195 (302)
T ss_dssp EEE-------------------CCCSSCCBSCEEE-E-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCC
T ss_pred eec-------------------CCCCCcccCceEE-E-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCcccc
Confidence 111 0011111111122 2 255666766643 35888998877654432222111
Q ss_pred ceeeEEEccCCcEEEEECCC-----CeEEEEEeCCceeeeee---cCCceeEEEecCCCCEEEEeCCCC-----eEEEEE
Q 040361 286 ALSKLAASRHGRIVLYGDDD-----LSLHLFSINGKHLASSE---SNGRLNCLELSACGQFLVCGGDQG-----QIVVRS 352 (413)
Q Consensus 286 ~v~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~dg-----~i~v~d 352 (413)
.-.++ ..-++++++.|+.+ ..+.+||+....-.... ....-..++. -++++++.|+.++ .+.+||
T Consensus 196 ~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd 273 (302)
T 2xn4_A 196 SGAGV-GVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA-VNGLLYVVGGDDGSCNLASVEYYN 273 (302)
T ss_dssp BSCEE-EEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEE
T ss_pred ccccE-EEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE-ECCEEEEECCcCCCcccccEEEEc
Confidence 11122 22367777777654 36889998865433321 1111112222 2677788887653 488999
Q ss_pred CCCCc
Q 040361 353 MNSLE 357 (413)
Q Consensus 353 ~~~~~ 357 (413)
..+.+
T Consensus 274 ~~~~~ 278 (302)
T 2xn4_A 274 PTTDK 278 (302)
T ss_dssp TTTTE
T ss_pred CCCCe
Confidence 88754
No 321
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.03 E-value=0.069 Score=47.13 Aligned_cols=155 Identities=14% Similarity=0.152 Sum_probs=98.5
Q ss_pred cCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecC----CCeEEEEEECCCCCEEEEccCCCcEEEEEecccccccccccc
Q 040361 142 TPSENFLITCGNWENSFQVIALNDGRVVQSIRQH----RDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRN 217 (413)
Q Consensus 142 ~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~ 217 (413)
..+|..++++- ++.||.-++..+..-+.+..- -+.|..+..+|+|++|+..+. ..|.|-.+..+........
T Consensus 29 ~~n~t~i~~a~--~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~- 104 (452)
T 3pbp_A 29 SQNGTRIVFIQ--DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVS- 104 (452)
T ss_dssp ETTTTEEEEEE--TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHH-
T ss_pred EcCCCEEEEEE--CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccc-
Confidence 45666666644 788999888755444444432 235788999999999998865 5788988874331111000
Q ss_pred ceeecCCCceeeecCceeeee------cCCCCeEEEEEecC---CCEEEEeeCCCcEEEEEccCCe--EEEEEeCC----
Q 040361 218 MQIEAPRKDYVIVETPFHILC------GHDDIITCLYVSVE---LDIVISGSKDGTCVFHTLREGR--YVRSLCHP---- 282 (413)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~------~h~~~i~~~~~~~~---~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~---- 282 (413)
. ..+. ....+. ....+|..+.|+|- +..|++-..|+.|++||+.... +. .+...
T Consensus 105 ~--~~~~--------q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~f 173 (452)
T 3pbp_A 105 I--QDAF--------QIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSF 173 (452)
T ss_dssp H--HHTT--------EEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEE
T ss_pred c--cccc--------ceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhcccccc
Confidence 0 0000 011111 13578999999994 5689999999999999997522 22 23211
Q ss_pred ----CCCceeeEEEccCCcEEEEEC--CCCeEEEE
Q 040361 283 ----SGSALSKLAASRHGRIVLYGD--DDLSLHLF 311 (413)
Q Consensus 283 ----~~~~v~~~~~~~~~~~l~~~~--~d~~i~i~ 311 (413)
....+.+++|..++-.|.+.+ ..|.|+-.
T Consensus 174 g~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 174 GLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp ESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred CCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 114688999999887777744 77887754
No 322
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.98 E-value=0.08 Score=45.20 Aligned_cols=175 Identities=12% Similarity=0.075 Sum_probs=88.4
Q ss_pred CeEEEEEcCCCcEEEEe--ecCCCeEEEEEECCCCCEEEEccCC-----CcEEEEEeccccccccccccceeecCCCcee
Q 040361 156 NSFQVIALNDGRVVQSI--RQHRDVVSCVAVTTDGSILATGSYD-----TTVMVWEVIRARAPEKRVRNMQIEAPRKDYV 228 (413)
Q Consensus 156 ~~i~i~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~l~s~s~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (413)
..+.+||..+.+....- ........++.+ +++.++.|+.+ ..+.+||..+.+.. .+
T Consensus 90 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~--~~------------- 152 (308)
T 1zgk_A 90 SALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWH--LV------------- 152 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEE--EC-------------
T ss_pred ceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEe--EC-------------
Confidence 46888998776543221 111111122223 66777777754 35777777655411 00
Q ss_pred eecCceeeeecCCCCeEEEEEecCCCEEEEeeCC-----CcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEEC
Q 040361 229 IVETPFHILCGHDDIITCLYVSVELDIVISGSKD-----GTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGD 303 (413)
Q Consensus 229 ~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 303 (413)
..+......-.++.+ ++.+++.|+.+ ..+.+||+.+.+-...-..+....-.+++ .-++++++.|+
T Consensus 153 ------~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG 223 (308)
T 1zgk_A 153 ------APMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVC-VLHNCIYAAGG 223 (308)
T ss_dssp ------CCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTEEEEECC
T ss_pred ------CCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEE-EECCEEEEEeC
Confidence 001111111122222 56677777654 45888998877544322222111111222 22677777776
Q ss_pred CC-----CeEEEEEeCCceeeeee---cCCceeEEEecCCCCEEEEeCCC-----CeEEEEECCCCc
Q 040361 304 DD-----LSLHLFSINGKHLASSE---SNGRLNCLELSACGQFLVCGGDQ-----GQIVVRSMNSLE 357 (413)
Q Consensus 304 ~d-----~~i~i~d~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~d-----g~i~v~d~~~~~ 357 (413)
.+ ..+.+||+....-.... ....-.+++. -++++++.|+.+ ..+.+||+.+.+
T Consensus 224 ~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 224 YDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp BCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred CCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 54 46899998865443321 1111112222 267777777754 457888887653
No 323
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.97 E-value=0.41 Score=48.86 Aligned_cols=243 Identities=12% Similarity=0.111 Sum_probs=123.5
Q ss_pred eecceeEEEEecCCC-----CEEEEeecC-CCeEEEEEcCCCcEEEEeec-CCCeEEEEEEC--CCCCEEEEccCCCcEE
Q 040361 131 ELGSQCFTTMQTPSE-----NFLITCGNW-ENSFQVIALNDGRVVQSIRQ-HRDVVSCVAVT--TDGSILATGSYDTTVM 201 (413)
Q Consensus 131 ~~~~~~~~~~~~~~~-----~~l~~~g~~-d~~i~i~~~~~~~~~~~~~~-h~~~v~~~~~~--~~~~~l~s~s~dg~i~ 201 (413)
.....+.++...+.. ..+++.|.+ |++++|+++.+.+.+....- -.....++.+. ....+|..|-.||.+.
T Consensus 551 ~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~ 630 (1158)
T 3ei3_A 551 EMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALF 630 (1158)
T ss_dssp ECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEE
T ss_pred CCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEE
Confidence 345566666665432 245555776 99999999988766643321 11233333332 2346788999999988
Q ss_pred EEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEE-Ee
Q 040361 202 VWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRS-LC 280 (413)
Q Consensus 202 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~ 280 (413)
-+.++......... ...+-| ..++.-..+...+..-+-+..+....++.-+ ++...+ +.
T Consensus 631 ~~~~d~~tg~l~d~------------------r~~~LG-~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~s~l~ 690 (1158)
T 3ei3_A 631 YFGLNIETGLLSDR------------------KKVTLG-TQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLVFSNVN 690 (1158)
T ss_dssp EEEECTTTCCEEEE------------------EEEECC-SSCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEEEEEBS
T ss_pred EEEEcCCCCccccc------------------eeEEcC-CCceEEEEEeeCCceeEEEECCCCEEEEEcC-CceEEeccC
Confidence 77765322100000 011111 2233333333333322222223433344322 222221 11
Q ss_pred CCCCCceee-EEEccC--CcEEEEECCCCeEEEEEeC---CceeeeeecCCceeEEEecCCCCEEEEeCC----------
Q 040361 281 HPSGSALSK-LAASRH--GRIVLYGDDDLSLHLFSIN---GKHLASSESNGRLNCLELSACGQFLVCGGD---------- 344 (413)
Q Consensus 281 ~~~~~~v~~-~~~~~~--~~~l~~~~~d~~i~i~d~~---~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---------- 344 (413)
. ..+.. ..|+.. ..-++..+. +.+++..++ .-..........+..++++|+.+.++++..
T Consensus 691 ~---~~v~~~~~F~se~~~~g~v~~~~-~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~ 766 (1158)
T 3ei3_A 691 L---KEVNYMCPLNSDGYPDSLALANN-STLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGG 766 (1158)
T ss_dssp S---SCCCEEEEECCSSSTTEEEEECS-SCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSS
T ss_pred h---HHhceEeccCcccCCCcEEEEcC-CceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccc
Confidence 1 12222 234331 233444443 458888775 222333456678888888887765544321
Q ss_pred ---------------------------------------CCeEEEEECCCCceEEEecC-CCCcEEEEE---EccC--Ce
Q 040361 345 ---------------------------------------QGQIVVRSMNSLEVVRRYSG-VGKIITSLA---VTPE--EC 379 (413)
Q Consensus 345 ---------------------------------------dg~i~v~d~~~~~~~~~~~~-~~~~v~~~~---~~~~--~~ 379 (413)
-+.|++.|..+++.+..+.- ....+.+++ |..+ ..
T Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~ 846 (1158)
T 3ei3_A 767 TTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTY 846 (1158)
T ss_dssp EEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCE
T ss_pred cchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEE
Confidence 12477888888877765542 223444544 4333 23
Q ss_pred EEEEc----------CCCeEEEEEecCC
Q 040361 380 FLAGT----------KDGCLLVYSIENR 397 (413)
Q Consensus 380 ~l~~~----------~dg~i~vw~~~~~ 397 (413)
+++|+ ..|.|++|++.++
T Consensus 847 lvVGTa~~~~~e~~~~~Gri~vf~v~~~ 874 (1158)
T 3ei3_A 847 FIVGTAMVYPEEAEPKQGRIVVFQYSDG 874 (1158)
T ss_dssp EEEEEEECCTTCSSCCCEEEEEEEEETT
T ss_pred EEEEeeecCCCCCCCCceEEEEEEEECC
Confidence 44454 3588999999744
No 324
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=96.96 E-value=0.14 Score=43.47 Aligned_cols=213 Identities=10% Similarity=0.031 Sum_probs=117.4
Q ss_pred EecCCCCEEEEeecCC-------------CeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEcc--CCCcEEEEE
Q 040361 140 MQTPSENFLITCGNWE-------------NSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGS--YDTTVMVWE 204 (413)
Q Consensus 140 ~~~~~~~~l~~~g~~d-------------~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s--~dg~i~iw~ 204 (413)
-++++++.+..+...+ ..|+..++..++...... .. +..|++++++|+-.. .++.-.||.
T Consensus 59 ~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~-~~----~~~~s~~g~~Iy~~~~~~~~~~~Iy~ 133 (302)
T 3s25_A 59 YINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDP-DP----CIYASLIGNYIYYLHYDTQTATSLYR 133 (302)
T ss_dssp EEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEEC-SC----EEEEEEETTEEEEEEESSSSCEEEEE
T ss_pred eEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeec-CC----ccEEEEeCCEEEEEeecCCCCceEEE
Confidence 3467889888877644 467888887665333222 11 225677888888765 455555665
Q ss_pred eccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeC-CCcEEEEEccCCeEEEEEeCCC
Q 040361 205 VIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSK-DGTCVFHTLREGRYVRSLCHPS 283 (413)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~ 283 (413)
+..... ....+..+.. .+++++++.|.-.+. ...|...++..+.....+..
T Consensus 134 ~~~dGs----------------------~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~-- 185 (302)
T 3s25_A 134 IRIDGE----------------------EKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC-- 185 (302)
T ss_dssp EETTSC----------------------CCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECS--
T ss_pred EECCCC----------------------CeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCC--
Confidence 543321 1222333322 345677777764444 67888888866654433332
Q ss_pred CCceeeEEEccCCcEEEEECCC--CeEEEEEeCCceeeeeecCCceeEEEecCCCCEEEEeC--CCCeEEEEECCCCceE
Q 040361 284 GSALSKLAASRHGRIVLYGDDD--LSLHLFSINGKHLASSESNGRLNCLELSACGQFLVCGG--DQGQIVVRSMNSLEVV 359 (413)
Q Consensus 284 ~~~v~~~~~~~~~~~l~~~~~d--~~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~dg~i~v~d~~~~~~~ 359 (413)
... ..+.|++..|+..... ..|..-++++........ ..+ ..|+|++++|+.++ ..+.|..-++.... .
T Consensus 186 --~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~-~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~-r 258 (302)
T 3s25_A 186 --NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLTE-ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTG-F 258 (302)
T ss_dssp --CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCCEECSC-SCE--EEEEEETTEEEEEECSSSCEEEEEETTSCC-C
T ss_pred --Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEeC-CCc--ceEEECCCEEEEEECCCCcEEEEEECCCCc-c
Confidence 122 3456888887765433 467777777654433322 223 34788898887652 34567777765433 2
Q ss_pred EEecCCCCcEEEEEEccCCeEEEEcCCCeEEEEEe
Q 040361 360 RRYSGVGKIITSLAVTPEECFLAGTKDGCLLVYSI 394 (413)
Q Consensus 360 ~~~~~~~~~v~~~~~~~~~~~l~~~~dg~i~vw~~ 394 (413)
+.+... .+..+....+-.+.+-...+.|..-++
T Consensus 259 ~~l~~~--~~~~i~i~~d~Iy~td~~~~~i~~~~~ 291 (302)
T 3s25_A 259 KELAKG--EFCNINVTSQYVYFTDFVSNKEYCTST 291 (302)
T ss_dssp EEEEES--CEEEEEECSSEEEEEETTTCCEEEEES
T ss_pred EEeeCC--ccceEEEeCCEEEEEECCCCeEEEEEC
Confidence 333221 244554443333445444555554443
No 325
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.89 E-value=0.042 Score=43.73 Aligned_cols=99 Identities=12% Similarity=-0.011 Sum_probs=64.6
Q ss_pred ceeeEEEccCCcEEEEECCCCeEEEEEeCC-cee------eee---ecCCceeEEEecCCCCEEEEeCCCCeEEEEECCC
Q 040361 286 ALSKLAASRHGRIVLYGDDDLSLHLFSING-KHL------ASS---ESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNS 355 (413)
Q Consensus 286 ~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~------~~~---~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~ 355 (413)
.+..++|+|++.+.++ .+|.++-.+... ... ... ... ...++.|.|+|.+.++ .||.|+-++..+
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDPNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccc-cceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence 5779999999987776 677777776642 110 111 111 1478999999998888 569988777643
Q ss_pred CceE------EEe-cCCCCcEEEEEEccCCeEEEEcCCCeEE
Q 040361 356 LEVV------RRY-SGVGKIITSLAVTPEECFLAGTKDGCLL 390 (413)
Q Consensus 356 ~~~~------~~~-~~~~~~v~~~~~~~~~~~l~~~~dg~i~ 390 (413)
...- ..+ ..-=..+..|.+.|+|.+.+.. |+.++
T Consensus 117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~ly 157 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQFY 157 (236)
T ss_dssp STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEEE
T ss_pred CCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCcEE
Confidence 2111 111 1111467999999999888876 88754
No 326
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.86 E-value=0.18 Score=43.12 Aligned_cols=142 Identities=11% Similarity=0.164 Sum_probs=73.1
Q ss_pred CCCEEEEeeCC-------CcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECC------CCeEEEEEeCCcee
Q 040361 252 ELDIVISGSKD-------GTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDD------DLSLHLFSINGKHL 318 (413)
Q Consensus 252 ~~~~l~s~~~d-------g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~i~d~~~~~~ 318 (413)
++.+++.|+.+ ..+.+||+.+.+-...-..+.. .....+...++++++.|+. -..+.+||+....-
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W 187 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIK-VYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDW 187 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSC-EESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEE
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCc-ccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEE
Confidence 55677777654 2477888877764433222211 1112222346777777764 23588999886543
Q ss_pred eeee---cCCceeEEEecCCCCEEEEeCCC-----CeEEEEECCCCceE--EEecCCCCcEEEEEEccCCeEE-EEcCC-
Q 040361 319 ASSE---SNGRLNCLELSACGQFLVCGGDQ-----GQIVVRSMNSLEVV--RRYSGVGKIITSLAVTPEECFL-AGTKD- 386 (413)
Q Consensus 319 ~~~~---~~~~i~~~~~s~~~~~l~~~~~d-----g~i~v~d~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l-~~~~d- 386 (413)
.... ....-.+++. -++++++.|+.+ ..+.+||+.+.+-. ..+....... +++.. +++++ .|+.+
T Consensus 188 ~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~-~~~i~v~GG~~~ 264 (318)
T 2woz_A 188 KDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSI-SLVSL-AGSLYAIGGFAM 264 (318)
T ss_dssp EEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSC-EEEEE-TTEEEEECCBCC
T ss_pred EECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccce-EEEEE-CCEEEEECCeec
Confidence 3321 1111112222 266777777643 35778998875432 2222222112 22222 45544 56543
Q ss_pred -------------CeEEEEEecCC
Q 040361 387 -------------GCLLVYSIENR 397 (413)
Q Consensus 387 -------------g~i~vw~~~~~ 397 (413)
..+.+||+++.
T Consensus 265 ~~~~~~~~~~~~~~~v~~yd~~~~ 288 (318)
T 2woz_A 265 IQLESKEFAPTEVNDIWKYEDDKK 288 (318)
T ss_dssp BC----CCBCCBCCCEEEEETTTT
T ss_pred cCCCCceeccceeeeEEEEeCCCC
Confidence 35778888764
No 327
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.86 E-value=0.21 Score=43.65 Aligned_cols=200 Identities=10% Similarity=0.026 Sum_probs=109.2
Q ss_pred CCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecC---
Q 040361 176 RDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVE--- 252 (413)
Q Consensus 176 ~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~--- 252 (413)
-.....++|.|+|+++++ ..+|.|.+++. ++. ..+..+ + ...........++++|+
T Consensus 28 l~~P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G~---~~~~~~--------------~--v~~~g~~g~~gia~~pdf~~ 86 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVT-ERPGRLVLISP-SGK---KLVASF--------------D--VANVGEAGLLGLALHPEFPK 86 (354)
T ss_dssp CSCEEEEEEEETTEEEEE-ETTTEEEEECS-SCE---EEEEEC--------------C--CCCSTTCSEEEEEECTTTTT
T ss_pred CCCCeEEEEcCCCeEEEE-eCCCEEEEEeC-CCc---eEeecc--------------c--eeecCCCceeeEEeCCCCCc
Confidence 345678999999985555 55688888862 221 100000 0 11122345788999997
Q ss_pred CCEEEEeeC----C----CcEEEEEccCC-------eEE-EEEeCCCCCceeeEEEccCCcEEEEECC------------
Q 040361 253 LDIVISGSK----D----GTCVFHTLREG-------RYV-RSLCHPSGSALSKLAASRHGRIVLYGDD------------ 304 (413)
Q Consensus 253 ~~~l~s~~~----d----g~i~vwd~~~~-------~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------ 304 (413)
+..|..+.. + ..|..|+.... +.+ ..+..........++|.|+|.++++.+.
T Consensus 87 ~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~ 166 (354)
T 3a9g_A 87 KSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSS 166 (354)
T ss_dssp SCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTC
T ss_pred CCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCC
Confidence 444443332 3 56777776543 111 1122111123567999999987766432
Q ss_pred -CCeEEEEEeCCc----------eeeeeecCCceeEEEecC-CCCEEEEeCCCC---eEEEEECCC--------C-----
Q 040361 305 -DLSLHLFSINGK----------HLASSESNGRLNCLELSA-CGQFLVCGGDQG---QIVVRSMNS--------L----- 356 (413)
Q Consensus 305 -d~~i~i~d~~~~----------~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg---~i~v~d~~~--------~----- 356 (413)
.+.|..++.++. .+....+ .....++|+| +|+++++-...+ .|.+...-. +
T Consensus 167 ~~G~I~ri~~dG~~p~~npf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~ 245 (354)
T 3a9g_A 167 LAGKILRVDEEGRPPADNPFPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRG 245 (354)
T ss_dssp CSSEEEEECTTSCCCTTSSSTTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCT
T ss_pred CCeEEEEEcCCCCCCCCCCCCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCC
Confidence 256777776654 1222222 3457899999 666655533222 243332110 0
Q ss_pred ---ceEEEecCCCCcEEEEEEc-------cCCeEEE-EcCCCeEEEEEecCC
Q 040361 357 ---EVVRRYSGVGKIITSLAVT-------PEECFLA-GTKDGCLLVYSIENR 397 (413)
Q Consensus 357 ---~~~~~~~~~~~~v~~~~~~-------~~~~~l~-~~~dg~i~vw~~~~~ 397 (413)
.++..+.........++|. .+|.++. .-..+.|...+++..
T Consensus 246 ~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~ 297 (354)
T 3a9g_A 246 EFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDN 297 (354)
T ss_dssp TSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGG
T ss_pred CCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCC
Confidence 1223331223467888883 4566665 456678888888753
No 328
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.80 E-value=0.057 Score=55.10 Aligned_cols=230 Identities=10% Similarity=0.132 Sum_probs=129.9
Q ss_pred EEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccc
Q 040361 139 TMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNM 218 (413)
Q Consensus 139 ~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~ 218 (413)
...+|..+.++.-+ ..++.|+|+++.+.++.+.-. ..|.-=.|-.+. .|+-.+ +..|..|++.....
T Consensus 71 AIMnP~~~iiALra--g~~lQiFnl~~k~klks~~~~-e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~-------- 137 (1630)
T 1xi4_A 71 AIMNPASKVIALKA--GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQ-------- 137 (1630)
T ss_pred hccCCCcceEEEec--CCeEEEeehHHhhhhcccccC-CCceEEEecCCC-eeEEEc-CCeEEEeccCCCCc--------
Confidence 33456666555533 679999999988877776643 345555564333 333332 36799999975332
Q ss_pred eeecCCCceeeecCceeeeecC----CCCeEEEEEecCCCEEEEee-------CCCcEEEEEccCCeEEEEEeCCCCCce
Q 040361 219 QIEAPRKDYVIVETPFHILCGH----DDIITCLYVSVELDIVISGS-------KDGTCVFHTLREGRYVRSLCHPSGSAL 287 (413)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~h----~~~i~~~~~~~~~~~l~s~~-------~dg~i~vwd~~~~~~~~~~~~~~~~~v 287 (413)
|...+..| ...|..-..+++.++++..+ -.|.+.+|..+.+.. +.+.+|.. ..
T Consensus 138 --------------P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s-Q~iegha~-~F 201 (1630)
T 1xi4_A 138 --------------PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGHAA-SF 201 (1630)
T ss_pred --------------cHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc-hhhhHhHh-hh
Confidence 33333333 34566777778888766332 347788888754432 22222211 11
Q ss_pred eeEEE--ccC-CcEEEEECC---CCeEEEEEeCCc-----eee----e--e---ecCCceeEEEecCCCCEEEEeCCCCe
Q 040361 288 SKLAA--SRH-GRIVLYGDD---DLSLHLFSINGK-----HLA----S--S---ESNGRLNCLELSACGQFLVCGGDQGQ 347 (413)
Q Consensus 288 ~~~~~--~~~-~~~l~~~~~---d~~i~i~d~~~~-----~~~----~--~---~~~~~i~~~~~s~~~~~l~~~~~dg~ 347 (413)
..+.. .+. ...++.+.. .+.+++-++... ... . . ....-..++..++....+..-+.-|.
T Consensus 202 ~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~ 281 (1630)
T 1xi4_A 202 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGY 281 (1630)
T ss_pred heeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCce
Confidence 11111 111 122222211 257888887421 110 0 1 11234567788888888888899999
Q ss_pred EEEEECCCCceEEEecCCCCcEEEEEEccC-CeEEEEcCCCeEEEEEecCC
Q 040361 348 IVVRSMNSLEVVRRYSGVGKIITSLAVTPE-ECFLAGTKDGCLLVYSIENR 397 (413)
Q Consensus 348 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~dg~i~vw~~~~~ 397 (413)
|++||+.++.++..-+-...+|-..+-... +-+++....|.|.--.+...
T Consensus 282 ~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~ 332 (1630)
T 1xi4_A 282 IHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (1630)
T ss_pred EEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCceEEEEEEccc
Confidence 999999999887544434444444433332 44555556677666666543
No 329
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.79 E-value=0.22 Score=45.17 Aligned_cols=144 Identities=10% Similarity=0.032 Sum_probs=80.7
Q ss_pred CeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeee------cCCCCeEEEEEe
Q 040361 177 DVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILC------GHDDIITCLYVS 250 (413)
Q Consensus 177 ~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~h~~~i~~~~~~ 250 (413)
.....++|.|+|+++++-...+.|++++..++... .+..+. ........|+|+
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~---------------------~~~~~~~~~~~~~g~~Gllgia~~ 85 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVK---------------------TVFQVPEIVNDADGQNGLLGFAFH 85 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE---------------------EEEECTTCCCCTTSSCSEEEEEEC
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEe---------------------EEecCCccccccCCCCceeEEEEC
Confidence 45679999999997777554456777765433310 011111 124567899999
Q ss_pred cC---CCEE-EEeeC------------CCcEEEEEccCC--e-----EEE-EEeCCCCCceeeEEEccCCcEEEEECC--
Q 040361 251 VE---LDIV-ISGSK------------DGTCVFHTLREG--R-----YVR-SLCHPSGSALSKLAASRHGRIVLYGDD-- 304 (413)
Q Consensus 251 ~~---~~~l-~s~~~------------dg~i~vwd~~~~--~-----~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~-- 304 (413)
|+ +..| ++-+. ...|.-+++..+ . .+. .+..........|+|.|+|.+.++.+.
T Consensus 86 Pdf~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~~ 165 (454)
T 1cru_A 86 PDFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQG 165 (454)
T ss_dssp TTTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTT
T ss_pred CCcCcCCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECCCC
Confidence 95 4444 33332 235655665432 1 111 122211234688999999988777543
Q ss_pred ------------------------------CCeEEEEEeCCc-----------eeeee-ecCCceeEEEecCCCCEEEE
Q 040361 305 ------------------------------DLSLHLFSINGK-----------HLASS-ESNGRLNCLELSACGQFLVC 341 (413)
Q Consensus 305 ------------------------------d~~i~i~d~~~~-----------~~~~~-~~~~~i~~~~~s~~~~~l~~ 341 (413)
.|.|.-++.++. ..... .-......++|+|+|++.++
T Consensus 166 ~~~~~~~~~~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~RNp~gla~dp~G~L~~~ 244 (454)
T 1cru_A 166 RNQLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTPNGKLLQS 244 (454)
T ss_dssp TTSGGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECTTSCEEEE
T ss_pred CCCccccccccccccccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECCCCcceEEECCCCCEEEE
Confidence 145555555554 11111 12245788999998876655
No 330
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.78 E-value=0.26 Score=43.67 Aligned_cols=230 Identities=7% Similarity=0.048 Sum_probs=134.8
Q ss_pred CCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCC-CcEEEEe
Q 040361 94 LQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALND-GRVVQSI 172 (413)
Q Consensus 94 ~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~-~~~~~~~ 172 (413)
.+|..+.+|--. ..++.+++.+...+ .....+...+.--.|..+...-++ . +..|+-|+++. ..+.+.+
T Consensus 73 MnP~~~iiALra-g~~lQiFnle~K~k------lks~~~~e~VvfWkWis~~~l~lV-T--~taVyHWsi~~~s~P~kvF 142 (494)
T 1bpo_A 73 MNPASKVIALKA-GKTLQIFNIEMKSK------MKAHTMTDDVTFWKWISLNTVALV-T--DNAVYHWSMEGESQPVKMF 142 (494)
T ss_dssp ECSSSSCEEEEE-TTEEEEEETTTTEE------EEEEECSSCCCEEEEEETTEEEEE-C--SSEEEEEESSSSCCCEEEE
T ss_pred eCCCCcEEEEec-CCeEEEEchHHhhh------hcceecCCCceEEEecCCCeEEEE-c--CCeeEEecccCCCCchhhe
Confidence 467667666543 55666654322221 122233445666667666554444 4 67999999964 4566666
Q ss_pred ecC----CCeEEEEEECCCCCEEEEcc-------CCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCC
Q 040361 173 RQH----RDVVSCVAVTTDGSILATGS-------YDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHD 241 (413)
Q Consensus 173 ~~h----~~~v~~~~~~~~~~~l~s~s-------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 241 (413)
..| ...|..-..+++.++++..+ -.|.+.+|..+.+. .+.+.+|.
T Consensus 143 dR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~------------------------sQ~ieGha 198 (494)
T 1bpo_A 143 DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------------------------SQPIEGHA 198 (494)
T ss_dssp ECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC------------------------EEEECCSE
T ss_pred ecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc------------------------cchheeee
Confidence 655 36788888899999877543 24778888887664 45667776
Q ss_pred CCeEEEEEecCC---CEEEEeeC---CCcEEEEEccCC--------eEEEEEeCCC---CCceeeEEEccCCcEEEEECC
Q 040361 242 DIITCLYVSVEL---DIVISGSK---DGTCVFHTLREG--------RYVRSLCHPS---GSALSKLAASRHGRIVLYGDD 304 (413)
Q Consensus 242 ~~i~~~~~~~~~---~~l~s~~~---dg~i~vwd~~~~--------~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~ 304 (413)
.....+.+..+. .+++.+.. .+.+++-++... +....+..+. ..-..++.+++....++.-+.
T Consensus 199 a~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK 278 (494)
T 1bpo_A 199 ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK 278 (494)
T ss_dssp EEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEET
T ss_pred eeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEec
Confidence 655444432211 23443433 268888888542 1122222211 234567888888888999999
Q ss_pred CCeEEEEEeCCc-eeeee-ecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCc
Q 040361 305 DLSLHLFSINGK-HLASS-ESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLE 357 (413)
Q Consensus 305 d~~i~i~d~~~~-~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~ 357 (413)
-|.+++||+++. .+... -....|...+......=+++-...|.|.--.+....
T Consensus 279 ~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 279 YGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp TSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred CceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEcccc
Confidence 999999999944 33332 233444444444443344444466666655555433
No 331
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.78 E-value=0.45 Score=46.39 Aligned_cols=222 Identities=14% Similarity=0.177 Sum_probs=128.2
Q ss_pred ceeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEecccccccc
Q 040361 134 SQCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEK 213 (413)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~ 213 (413)
..+.++....++...+. . +.-+..||..+.+...........|.++.. .++ .|..++.+ -+..++..+.+
T Consensus 63 ~~i~~i~~d~~g~lWig--T-~~Gl~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~---- 132 (758)
T 3ott_A 63 TRIYCGVIIDNTYLYMG--T-DNGILVYNYRADRYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRK---- 132 (758)
T ss_dssp SCEEEEEEETTTEEEEE--E-TTEEEEEETTTTEECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCC----
T ss_pred ceEEEEEEcCCCcEEEE--e-CCCeEEEeCCCCEEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCe----
Confidence 34556666666655553 3 345789998776443211112345777654 344 45556655 47777765543
Q ss_pred ccccceeecCCCceeeecCceeee-----ecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCC-----
Q 040361 214 RVRNMQIEAPRKDYVIVETPFHIL-----CGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPS----- 283 (413)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~----- 283 (413)
...+ ......|.++....++.+.+ |+.+ -+..+|..+++... +..+.
T Consensus 133 --------------------~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~-~~~~~~~~~~ 189 (758)
T 3ott_A 133 --------------------LTSFDTRRNGLPNNTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFEG-IPLPVHSSQS 189 (758)
T ss_dssp --------------------EEEECHHHHCCSCSCEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEE-ECCCCCTTCS
T ss_pred --------------------EEEeccCCCCcCCCeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceEE-ecCCCccccc
Confidence 1111 01134578887777777655 4444 47788887765432 22111
Q ss_pred CCceeeEEEccCCcEEEEECCCCeEEEEEeCCceeeee--ecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEE
Q 040361 284 GSALSKLAASRHGRIVLYGDDDLSLHLFSINGKHLASS--ESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRR 361 (413)
Q Consensus 284 ~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~ 361 (413)
...|.++....++..|..|+. +-+..||......... .....|.++....+|.+.+.. .+ -+.+++..+.+...-
T Consensus 190 ~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~-Gl~~~~~~~~~~~~~ 266 (758)
T 3ott_A 190 NLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGT-DN-GLYVYHNDTTPLQHI 266 (758)
T ss_dssp SCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEE-TT-EEEEECCTTSCCEEE
T ss_pred cceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEe-CC-ceeEEecCCCcEEEE
Confidence 124777877777665555553 4688888875544322 123457888888778765544 44 578888876543321
Q ss_pred ec-------CCCCcEEEEEEccCCeEEEEcCCCeEEEE
Q 040361 362 YS-------GVGKIITSLAVTPEECFLAGTKDGCLLVY 392 (413)
Q Consensus 362 ~~-------~~~~~v~~~~~~~~~~~l~~~~dg~i~vw 392 (413)
.. -....|.++....+|.+-.|+..| +.++
T Consensus 267 ~~~~~~~~~l~~~~i~~i~~D~~g~lWiGT~~G-l~~~ 303 (758)
T 3ott_A 267 IHDSRNIQSLTNNIIWNIFADQEHNIWLGTDYG-ISLS 303 (758)
T ss_dssp CCCTTCTTSCSCSCEEEEEECTTCCEEEEESSS-EEEE
T ss_pred EcCCCCcCcCCcCeEEEEEEcCCCCEEEEeCCc-cccc
Confidence 11 123468999888888777777666 4443
No 332
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.73 E-value=0.00093 Score=57.65 Aligned_cols=192 Identities=12% Similarity=0.083 Sum_probs=98.2
Q ss_pred CEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEe-eCCCcEEE
Q 040361 189 SILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISG-SKDGTCVF 267 (413)
Q Consensus 189 ~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~-~~dg~i~v 267 (413)
..++.++.||.|.-+|..+++..+..-... . .+......... ..++..++.. +.||.|..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~-~-----------~p~~~~~~~~~-------~~~~~~~vv~p~~dG~l~a 71 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPEN-F-----------QPLIEIQEPSR-------LETYETLIIEPFGDGNIYY 71 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGG-S-----------CCSEECCCSCT-------TTSSEEEEECCSTTTEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCc-c-----------CCcEEecCCcc-------ccCCcEEEEEECCCCEEEE
Confidence 468888999999999988887433211100 0 00111110100 0122333333 68999999
Q ss_pred EEccCCeEEEEEeCCCCCceeeEEEc-----------cCCcEEEEECCCCeEEEEEeC-CceeeeeecCCce--------
Q 040361 268 HTLREGRYVRSLCHPSGSALSKLAAS-----------RHGRIVLYGDDDLSLHLFSIN-GKHLASSESNGRL-------- 327 (413)
Q Consensus 268 wd~~~~~~~~~~~~~~~~~v~~~~~~-----------~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~i-------- 327 (413)
+|..+|.....+..+.-....-+... ..+..+++|+.++.+...|++ |+.+.......+.
T Consensus 72 ~~~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e 151 (339)
T 2be1_A 72 FNAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSV 151 (339)
T ss_dssp EETTTEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC-------
T ss_pred EECCCCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCccccccccc
Confidence 99988866655543210000011111 145678899999999999988 6666555433221
Q ss_pred eEEEec-----CCCCEEEEeCCCCeEEEEECCCCceEEEe-----cCCCCc--E-EEEEEccCCeEEEEcCCCeEEEEEe
Q 040361 328 NCLELS-----ACGQFLVCGGDQGQIVVRSMNSLEVVRRY-----SGVGKI--I-TSLAVTPEECFLAGTKDGCLLVYSI 394 (413)
Q Consensus 328 ~~~~~s-----~~~~~l~~~~~dg~i~v~d~~~~~~~~~~-----~~~~~~--v-~~~~~~~~~~~l~~~~dg~i~vw~~ 394 (413)
.|.... -.+..++.|..+..+.+.+ ++++ +..+ ...... + ..-..+.|+.+++++.||.|.-+|.
T Consensus 152 ~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~~~~~~dg~v~A~d~ 229 (339)
T 2be1_A 152 DCSPEEKIKLQECENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMCIAPFRDKSLLASDL 229 (339)
T ss_dssp -------------CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCCEEEETTTEEEEECS
T ss_pred ccccccccccccCCCeEEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcEEEECCCCEEEEEEC
Confidence 111111 1245677777777777666 4443 2111 111000 0 0000122455666777788877777
Q ss_pred cCCcccc
Q 040361 395 ENRRTSL 401 (413)
Q Consensus 395 ~~~~~~~ 401 (413)
.+++...
T Consensus 230 ~~G~~~W 236 (339)
T 2be1_A 230 DFRIARW 236 (339)
T ss_dssp TTCCEEE
T ss_pred CCCcEEE
Confidence 7766543
No 333
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.67 E-value=0.35 Score=43.79 Aligned_cols=155 Identities=14% Similarity=0.127 Sum_probs=88.6
Q ss_pred CCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCC-------CCCceeeEEEccC---CcEEEEECC------
Q 040361 241 DDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHP-------SGSALSKLAASRH---GRIVLYGDD------ 304 (413)
Q Consensus 241 ~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-------~~~~v~~~~~~~~---~~~l~~~~~------ 304 (413)
-...+.++|.|+++++++-...+.|++++..+++........ ....+..++++|+ +..|++...
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 345679999999987776544457888876555543222111 1235678999995 444444332
Q ss_pred -------CCeEEEEEeCCc--e------eee-e--ecCCceeEEEecCCCCEEEEeCC----------------------
Q 040361 305 -------DLSLHLFSINGK--H------LAS-S--ESNGRLNCLELSACGQFLVCGGD---------------------- 344 (413)
Q Consensus 305 -------d~~i~i~d~~~~--~------~~~-~--~~~~~i~~~~~s~~~~~l~~~~~---------------------- 344 (413)
...|..|++... . +.. . ...+....++|.|||.+.++.+.
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~~~~~~~~~~~~~~~~~~p~~~ 185 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLPNQAQHTPTQQ 185 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTTTTSGGGTTSCCCTTCCCCHH
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECCCCCCCccccccccccccccccc
Confidence 235666665421 1 111 1 12345788999999987766432
Q ss_pred ----------CCeEEEEECCCCc-----------eEEEe-cCCCCcEEEEEEccCCeEEE--EcCCCeEEEEEecCC
Q 040361 345 ----------QGQIVVRSMNSLE-----------VVRRY-SGVGKIITSLAVTPEECFLA--GTKDGCLLVYSIENR 397 (413)
Q Consensus 345 ----------dg~i~v~d~~~~~-----------~~~~~-~~~~~~v~~~~~~~~~~~l~--~~~dg~i~vw~~~~~ 397 (413)
.|.|.-++.. +. ....+ .+| .....++|+|+|.+.+ -+.++.-.|..+..+
T Consensus 186 ~~~aq~~~~~~G~IlRi~~d-G~ip~~Npf~~~~~~ei~a~G~-RNp~gla~dp~G~L~~~d~g~~~~dein~i~~G 260 (454)
T 1cru_A 186 ELNGKDYHTYMGKVLRLNLD-GSIPKDNPSFNGVVSHIYTLGH-RNPQGLAFTPNGKLLQSEQGPNSDDEINLIVKG 260 (454)
T ss_dssp HHHTTCCTTCSSEEEEECTT-SCCCTTCCEETTEECSEEEBCC-SEEEEEEECTTSCEEEEEECSSSCEEEEECCTT
T ss_pred cccccCCCCCCeeEEEEeCC-CCCCCCCCCCCCCcceEEEECC-CCcceEEECCCCCEEEEecCCCCCeEEEEecCC
Confidence 1444444443 22 11122 234 3578899999987664 445555555555543
No 334
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.64 E-value=0.26 Score=41.84 Aligned_cols=230 Identities=7% Similarity=0.052 Sum_probs=132.2
Q ss_pred CCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCC-CcEEEEe
Q 040361 94 LQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALND-GRVVQSI 172 (413)
Q Consensus 94 ~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~-~~~~~~~ 172 (413)
.+|..+.+|--. ...+.+++.+...+ .....+...+.--.|..+...-++ . +..|+-|+++. ..+.+.+
T Consensus 74 MnP~~~ViALra-g~~LQiFnletK~k------lks~~~~e~VvfWkWis~~~L~lV-T--~taVyHWs~~~~s~P~kvF 143 (365)
T 2xzh_A 74 MNPASKVIALKA-GKTLQIFNIEMKSK------MKAHTMTDDVTFWKWISLNTVALV-T--DNAVYHWSMEGESQPVKMF 143 (365)
T ss_dssp ECSSSSEEEEEE-TTEEEEEETTTTEE------EEEEECSSCEEEEEECSSSEEEEE-E--SSEEEEEESSTTCCCEEEE
T ss_pred eCCCccEEEEec-CCeEEEechHHhhh------hcceecCCccEEEEecCCCeEEEE-c--CCcEEEEcccCCCCCceee
Confidence 367777666543 45666654332221 122333456677777766555444 4 67999999964 4566666
Q ss_pred ecC----CCeEEEEEECCCCCEEEEccC-------CCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCC
Q 040361 173 RQH----RDVVSCVAVTTDGSILATGSY-------DTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHD 241 (413)
Q Consensus 173 ~~h----~~~v~~~~~~~~~~~l~s~s~-------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 241 (413)
..| ...|..-..+++.++++..+- .|.+.+|..+.+. .+.+.+|.
T Consensus 144 dR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~------------------------sQ~ieGha 199 (365)
T 2xzh_A 144 DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------------------------SQPIEGHA 199 (365)
T ss_dssp ECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE------------------------EEEECCSE
T ss_pred ecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccc------------------------cceeeeee
Confidence 655 357888888899998765442 4678888876654 45566676
Q ss_pred CCeEEEEEecC---CCEEEEeeC---CCcEEEEEccCC--------eEEEEEeCCC---CCceeeEEEccCCcEEEEECC
Q 040361 242 DIITCLYVSVE---LDIVISGSK---DGTCVFHTLREG--------RYVRSLCHPS---GSALSKLAASRHGRIVLYGDD 304 (413)
Q Consensus 242 ~~i~~~~~~~~---~~~l~s~~~---dg~i~vwd~~~~--------~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~ 304 (413)
.....+.+..+ ..+++.+.. .+.+++-++... +....+..+. ..-..++..++....++.-+.
T Consensus 200 a~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK 279 (365)
T 2xzh_A 200 ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK 279 (365)
T ss_dssp EEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEET
T ss_pred eeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeC
Confidence 55433332211 113333322 257888887432 1122222221 234566888888888999999
Q ss_pred CCeEEEEEeCCc-eeeeee-cCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCc
Q 040361 305 DLSLHLFSINGK-HLASSE-SNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLE 357 (413)
Q Consensus 305 d~~i~i~d~~~~-~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~ 357 (413)
-|.+++||+++. .+.... ....|...+......=+++-...|.|.--.++...
T Consensus 280 ~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~ 334 (365)
T 2xzh_A 280 YGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 334 (365)
T ss_dssp TSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEEEEEEECTTT
T ss_pred CcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCCEEEEEEECccc
Confidence 999999999944 333322 33444444443333334444466666655555433
No 335
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.47 E-value=0.22 Score=42.57 Aligned_cols=105 Identities=15% Similarity=0.074 Sum_probs=56.5
Q ss_pred cCCCEEEEeeC-C-----CcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCC-----eEEEEEeCCceee
Q 040361 251 VELDIVISGSK-D-----GTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDL-----SLHLFSINGKHLA 319 (413)
Q Consensus 251 ~~~~~l~s~~~-d-----g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~ 319 (413)
.++++++.|+. + ..+.+||+.+.+-...-..+.. .....+..-++++++.|+.++ .+.+||+....-.
T Consensus 147 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 225 (315)
T 4asc_A 147 HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTA-RSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWA 225 (315)
T ss_dssp ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSC-CBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEE
T ss_pred ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCc-hhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEE
Confidence 35567777776 2 3688999887754432222211 111222233677777776543 5888898765433
Q ss_pred eee---cCCceeEEEecCCCCEEEEeCCC--------------CeEEEEECCCCc
Q 040361 320 SSE---SNGRLNCLELSACGQFLVCGGDQ--------------GQIVVRSMNSLE 357 (413)
Q Consensus 320 ~~~---~~~~i~~~~~s~~~~~l~~~~~d--------------g~i~v~d~~~~~ 357 (413)
... ....-.+++. -++++++.|+.+ ..+.+||+.+.+
T Consensus 226 ~~~~~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 279 (315)
T 4asc_A 226 PFEAFPQERSSLSLVS-LVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK 279 (315)
T ss_dssp EECCCSSCCBSCEEEE-ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred ECCCCCCcccceeEEE-ECCEEEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence 321 1111112222 266777777653 246778887654
No 336
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.28 E-value=0.28 Score=42.79 Aligned_cols=147 Identities=11% Similarity=0.089 Sum_probs=78.6
Q ss_pred CeEEEEEECCCCC-EEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecC---
Q 040361 177 DVVSCVAVTTDGS-ILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVE--- 252 (413)
Q Consensus 177 ~~v~~~~~~~~~~-~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~--- 252 (413)
.....|+|.|+|+ ++++ ...|.|++++...... ..+.. ..............++++|+
T Consensus 18 ~~P~~i~~~pdG~~l~V~-e~~G~i~~~~~~g~~~--~~~~~---------------~~~v~~~g~~g~~gia~~pdf~~ 79 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLIT-LRGGELRHWQAGKGLS--APLSG---------------VPDVWAHGQGGLLDVVLAPDFAQ 79 (353)
T ss_dssp SSEEEEEECSTTCCEEEE-ETTTEEEEEETTTEEC--CCCBS---------------CCCCCCSTTCSEEEEEECTTHHH
T ss_pred CCcEEEEEcCCCCEEEEE-eCCceEEEEeCCCcee--eEecC---------------CcccccCCCCCceeEEECCCCCC
Confidence 3467899999998 5554 5678888887422110 00000 00011122345688999995
Q ss_pred -CCEEEEeeC-------CCcEEEEEccCC--e--EEEEE-e-CC----CCCceeeEEEccCCcEEEEECC----------
Q 040361 253 -LDIVISGSK-------DGTCVFHTLREG--R--YVRSL-C-HP----SGSALSKLAASRHGRIVLYGDD---------- 304 (413)
Q Consensus 253 -~~~l~s~~~-------dg~i~vwd~~~~--~--~~~~~-~-~~----~~~~v~~~~~~~~~~~l~~~~~---------- 304 (413)
+.+.++-+. ...|..+++... . ....+ . .+ .......++|.|+|.++++.+.
T Consensus 80 ~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~ 159 (353)
T 2g8s_A 80 SRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDL 159 (353)
T ss_dssp HCEEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCT
T ss_pred CCEEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCC
Confidence 444444322 235666666433 1 11111 1 11 1122467999999976666543
Q ss_pred ---CCeEEEEEeCCce-------------eeee-ecCCceeEEEecC-CCCEEEE
Q 040361 305 ---DLSLHLFSINGKH-------------LASS-ESNGRLNCLELSA-CGQFLVC 341 (413)
Q Consensus 305 ---d~~i~i~d~~~~~-------------~~~~-~~~~~i~~~~~s~-~~~~l~~ 341 (413)
.+.|.-++.++.. .... ........++|+| +|+++++
T Consensus 160 ~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~ 214 (353)
T 2g8s_A 160 DKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLN 214 (353)
T ss_dssp TSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEE
T ss_pred CCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEE
Confidence 2567777776541 1111 1223578899999 5554443
No 337
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.10 E-value=0.47 Score=40.53 Aligned_cols=106 Identities=17% Similarity=0.159 Sum_probs=56.1
Q ss_pred cCCCEEEEeeC------CCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCC-----CeEEEEEeCCceee
Q 040361 251 VELDIVISGSK------DGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDD-----LSLHLFSINGKHLA 319 (413)
Q Consensus 251 ~~~~~l~s~~~------dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~ 319 (413)
.++++++.|+. -..+.+||+.+.+-...-..+....-.+++ .-++++++.|+.+ ..+.+||+....-.
T Consensus 157 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 235 (318)
T 2woz_A 157 HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVA-IHKGKIVIAGGVTEDGLSASVEAFDLKTNKWE 235 (318)
T ss_dssp ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEEEEEETTEEEEEEEEEETTTCCEE
T ss_pred ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEE-EECCEEEEEcCcCCCCccceEEEEECCCCeEE
Confidence 35667777764 235889999887644332222111111222 2366777777643 35778888754433
Q ss_pred eee---cCCceeEEEecCCCCEEEEeCCC--------------CeEEEEECCCCce
Q 040361 320 SSE---SNGRLNCLELSACGQFLVCGGDQ--------------GQIVVRSMNSLEV 358 (413)
Q Consensus 320 ~~~---~~~~i~~~~~s~~~~~l~~~~~d--------------g~i~v~d~~~~~~ 358 (413)
... ....-.+++ .-++++++.|+.+ ..+.+||+.+.+-
T Consensus 236 ~~~~~p~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W 290 (318)
T 2woz_A 236 VMTEFPQERSSISLV-SLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEW 290 (318)
T ss_dssp ECCCCSSCCBSCEEE-EETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEE
T ss_pred ECCCCCCcccceEEE-EECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEe
Confidence 221 111111222 2256777777653 3577888876543
No 338
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.10 E-value=1.5 Score=44.86 Aligned_cols=135 Identities=11% Similarity=0.122 Sum_probs=87.6
Q ss_pred CCeEEEEEcCCCcEEEEeecC-CCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCc
Q 040361 155 ENSFQVIALNDGRVVQSIRQH-RDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETP 233 (413)
Q Consensus 155 d~~i~i~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (413)
...|++.+...+..+..+..- ...|...+.+ +.+++.++ ++.+.+++++.++. . .
T Consensus 491 ~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n--~~~vvva~-g~~l~~fel~~~~L-----~----------------~ 546 (1158)
T 3ei3_A 491 SASVRLVSQEPKALVSEWKEPQAKNISVASCN--SSQVVVAV-GRALYYLQIHPQEL-----R----------------Q 546 (1158)
T ss_dssp SSCEEEEESSSCCEEEEECCTTCCCCCEEEEC--SSEEEEEE-TTEEEEEEEETTEE-----E----------------E
T ss_pred cCEEEEEECCCCeEEEEEECCCCCEEEEEEeC--CCEEEEEE-CCEEEEEEeeCCce-----e----------------e
Confidence 456788887666666666542 3457666654 34666664 67888888875320 0 0
Q ss_pred eeeeecCCCCeEEEEEecC------CCEEEEeeC-CCcEEEEEccCCeEEEEEeCCCCCceeeEEEcc--CCcEEEEECC
Q 040361 234 FHILCGHDDIITCLYVSVE------LDIVISGSK-DGTCVFHTLREGRYVRSLCHPSGSALSKLAASR--HGRIVLYGDD 304 (413)
Q Consensus 234 ~~~~~~h~~~i~~~~~~~~------~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~ 304 (413)
... ..-...|.|+++.+. ..+++.|.. |++++++++...+.+............++.+.. ...++.+|-.
T Consensus 547 ~~~-~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~ 625 (1158)
T 3ei3_A 547 ISH-TEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALG 625 (1158)
T ss_dssp EEE-EECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEET
T ss_pred ecc-cCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeC
Confidence 111 123567999998753 368888986 999999999987776655443323455554442 3457889999
Q ss_pred CCeEEEEEeC
Q 040361 305 DLSLHLFSIN 314 (413)
Q Consensus 305 d~~i~i~d~~ 314 (413)
||.+..+.++
T Consensus 626 dG~l~~~~~d 635 (1158)
T 3ei3_A 626 DGALFYFGLN 635 (1158)
T ss_dssp TSEEEEEEEC
T ss_pred CCeEEEEEEc
Confidence 9998777665
No 339
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.08 E-value=0.62 Score=40.28 Aligned_cols=206 Identities=10% Similarity=0.025 Sum_probs=111.5
Q ss_pred CCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecC--
Q 040361 175 HRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVE-- 252 (413)
Q Consensus 175 h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~-- 252 (413)
.-.....++|.|||+++++--..|.|++++..++... .+.. .-..+.........|+++|+
T Consensus 30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~--~v~~---------------~~~v~~~g~~GllGia~~Pdf~ 92 (347)
T 3das_A 30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKT--ELGE---------------VPGVSPSGEGGLLGIALSPDYA 92 (347)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE--EEEE---------------CTTCCCBTTBSEEEEEECTTHH
T ss_pred CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEe--eecc---------------cCceeecCCCCceeeEeccccc
Confidence 3456789999999998877665898988875443310 0000 00011233556789999985
Q ss_pred --CCEEEEe--eCCCcEEEEEccCC----------eEEE-EEeCCCCCceeeEEEccCCcEEEEECC-------------
Q 040361 253 --LDIVISG--SKDGTCVFHTLREG----------RYVR-SLCHPSGSALSKLAASRHGRIVLYGDD------------- 304 (413)
Q Consensus 253 --~~~l~s~--~~dg~i~vwd~~~~----------~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~------------- 304 (413)
+.+.++- ..+..|.-|.+..+ +.+. .+..........|+|.|+|.+.++.+.
T Consensus 93 ~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~ 172 (347)
T 3das_A 93 SDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSL 172 (347)
T ss_dssp HHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCS
T ss_pred cCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCC
Confidence 3333332 23456666665441 1222 222111223567999999987776432
Q ss_pred CCeEEEEEeCCce----------eeeeecCCceeEEEecCCCCEEEEeC-CCCeEEEEECCCCc----------------
Q 040361 305 DLSLHLFSINGKH----------LASSESNGRLNCLELSACGQFLVCGG-DQGQIVVRSMNSLE---------------- 357 (413)
Q Consensus 305 d~~i~i~d~~~~~----------~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~v~d~~~~~---------------- 357 (413)
.|.|.-++.++.. +....+ .....++|+|+|.+.++=. .++.=.|.-+..+.
T Consensus 173 ~G~IlRi~~dG~ip~~nPf~~~~i~a~G~-RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~ 251 (347)
T 3das_A 173 GGKILRMTPDGEPAPGNPFPGSPVYSYGH-RNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGF 251 (347)
T ss_dssp TTCEEEECTTSSBCTTCSSTTCCEEEBCC-SBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTC
T ss_pred CCEEEEEeCCCCccCCCCCCCCeEEeeCC-CCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccc
Confidence 3566666666541 222222 3467899999887666532 23222222222111
Q ss_pred --eEEEecCCCCcEEEEEEccCCeEEEEcCCCeEEEEEecCCc
Q 040361 358 --VVRRYSGVGKIITSLAVTPEECFLAGTKDGCLLVYSIENRR 398 (413)
Q Consensus 358 --~~~~~~~~~~~v~~~~~~~~~~~l~~~~dg~i~vw~~~~~~ 398 (413)
++..+..+......++|.....|++.-..+.|....++..+
T Consensus 252 ~~P~~~~~~~~~ap~G~~~~~g~~~~~~l~~~~l~~v~~~~~~ 294 (347)
T 3das_A 252 HDPVAQWSTDEASPSGIAYAEGSVWMAGLRGERLWRIPLKGTA 294 (347)
T ss_dssp CCCSEEECTTTCCEEEEEEETTEEEEEESTTCSEEEEEEETTE
T ss_pred cCCcEecCCCCCCCcceEEEcCceeeccccCCEEEEEEecCCc
Confidence 12233322245678888743334455566677777776543
No 340
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.07 E-value=0.64 Score=40.37 Aligned_cols=205 Identities=11% Similarity=0.026 Sum_probs=115.9
Q ss_pred eEEEEecCCCCEEEEee-----------cCCCeEEEEEcCC--CcEE-EEeec-----CCCeEEEEEECC--CCC-EEEE
Q 040361 136 CFTTMQTPSENFLITCG-----------NWENSFQVIALND--GRVV-QSIRQ-----HRDVVSCVAVTT--DGS-ILAT 193 (413)
Q Consensus 136 ~~~~~~~~~~~~l~~~g-----------~~d~~i~i~~~~~--~~~~-~~~~~-----h~~~v~~~~~~~--~~~-~l~s 193 (413)
+-.+...++|..+++++ ..+|.|.++|..+ ++.. -.+.+ ..-....+.+.+ +++ +|+.
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V 131 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV 131 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence 44555677766655553 2589999999873 3321 12222 123566777655 343 3443
Q ss_pred c-cC--CCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecC-CCCeEEEEEecCCCEEEEee---------
Q 040361 194 G-SY--DTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGH-DDIITCLYVSVELDIVISGS--------- 260 (413)
Q Consensus 194 ~-s~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~i~~~~~~~~~~~l~s~~--------- 260 (413)
+ .. +.+|.+|+++....... .+..+.+. -...+.+.+.++|.+.++..
T Consensus 132 vnh~~~~s~ielf~~d~~~~~~~-------------------~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~ 192 (355)
T 3sre_A 132 VNHPGSSSTVEVFKFQEEEKSLL-------------------HLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLK 192 (355)
T ss_dssp EECSTTCCEEEEEEEETTTTEEE-------------------EEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHH
T ss_pred EECCCCCCeEEEEEEECCCCEEE-------------------EEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccc
Confidence 3 22 56788888876431110 12333332 23578899999998777654
Q ss_pred --------CCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEE-CCCCeEEEEEeCC-ceee---eeecCCce
Q 040361 261 --------KDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYG-DDDLSLHLFSING-KHLA---SSESNGRL 327 (413)
Q Consensus 261 --------~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~i~d~~~-~~~~---~~~~~~~i 327 (413)
..|.|..+|. ++....... -...+.++|+||++.++++ +..+.|..|++.. ..+. .....+..
T Consensus 193 ~~e~~~~~~~g~vyr~d~--~~~~~~~~~--l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~P 268 (355)
T 3sre_A 193 SWEMHLGLAWSFVTYYSP--NDVRVVAEG--FDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLV 268 (355)
T ss_dssp HHHHHTTCCCEEEEEECT--TCCEEEEEE--ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEE
T ss_pred cchhhccCCccEEEEEEC--CeEEEeecC--CcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCC
Confidence 1245555554 322221221 1246889999999877665 4578999999862 2221 12345677
Q ss_pred eEEEecC-CCCEEEEeCCC-CeEEEEECC--CCceEEEec
Q 040361 328 NCLELSA-CGQFLVCGGDQ-GQIVVRSMN--SLEVVRRYS 363 (413)
Q Consensus 328 ~~~~~s~-~~~~l~~~~~d-g~i~v~d~~--~~~~~~~~~ 363 (413)
-.+++.+ +|++.+++..+ +.|..|+.. .+..+.++.
T Consensus 269 DGi~vD~e~G~lwva~~~~g~~v~~~~P~~~~~s~v~rI~ 308 (355)
T 3sre_A 269 DNISVDPVTGDLWVGCHPNGMRIFFYDAENPPGSEVLRIQ 308 (355)
T ss_dssp EEEEECTTTCCEEEEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred ceEEEeCCCCcEEEEecCCceEEEEECCCCCCCCEEEEEE
Confidence 8899999 59887766433 344444443 234444443
No 341
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.00 E-value=1.2 Score=42.89 Aligned_cols=145 Identities=8% Similarity=0.105 Sum_probs=79.8
Q ss_pred CCCEEEEeeCCC------cEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCC--eEEEEEeCCceeeeeec
Q 040361 252 ELDIVISGSKDG------TCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDL--SLHLFSINGKHLASSES 323 (413)
Q Consensus 252 ~~~~l~s~~~dg------~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~ 323 (413)
++.+++.|+.++ .+.+||..+.+-...-..+....-.+.+.-.++++++.|+.++ .+.+||+....-.....
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~ 530 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTP 530 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCC
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccC
Confidence 667777877543 4788898876543322222111122233324788888887654 68999988654333221
Q ss_pred -------CCceeEEEecCC-CCEEEEeCC--C-----CeEEEEECCCCc--------eEEEec-CCCCcEEEEEEccCCe
Q 040361 324 -------NGRLNCLELSAC-GQFLVCGGD--Q-----GQIVVRSMNSLE--------VVRRYS-GVGKIITSLAVTPEEC 379 (413)
Q Consensus 324 -------~~~i~~~~~s~~-~~~l~~~~~--d-----g~i~v~d~~~~~--------~~~~~~-~~~~~v~~~~~~~~~~ 379 (413)
.....++.+..+ +++++.|+. + +.+.+||+.+.+ .+.... ...... +++...+++
T Consensus 531 ~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~-~~~~~~~~~ 609 (695)
T 2zwa_A 531 KDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGS-QIKYITPRK 609 (695)
T ss_dssp SSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSC-EEEEEETTE
T ss_pred CCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccc-eEEEeCCCE
Confidence 122233555555 667777765 2 468999998766 112211 111112 233343355
Q ss_pred EE-EEcC--------CCeEEEEEecCC
Q 040361 380 FL-AGTK--------DGCLLVYSIENR 397 (413)
Q Consensus 380 ~l-~~~~--------dg~i~vw~~~~~ 397 (413)
++ .|+. ...+.+||+.+.
T Consensus 610 iyv~GG~~~~~~~~~~~~v~~yd~~t~ 636 (695)
T 2zwa_A 610 LLIVGGTSPSGLFDRTNSIISLDPLSE 636 (695)
T ss_dssp EEEECCBCSSCCCCTTTSEEEEETTTT
T ss_pred EEEECCccCCCCCCCCCeEEEEECCCC
Confidence 44 5663 345888998765
No 342
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.94 E-value=0.28 Score=47.23 Aligned_cols=188 Identities=14% Similarity=0.187 Sum_probs=92.1
Q ss_pred EEEecC-CCCEEEEeecCC-----CeEEEEEcCCCcEEEE--eecCCCeEEEEEECCCCCEEEEccCCC--cEEEEEecc
Q 040361 138 TTMQTP-SENFLITCGNWE-----NSFQVIALNDGRVVQS--IRQHRDVVSCVAVTTDGSILATGSYDT--TVMVWEVIR 207 (413)
Q Consensus 138 ~~~~~~-~~~~l~~~g~~d-----~~i~i~~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~s~dg--~i~iw~~~~ 207 (413)
+++..+ ++..+++.|... +.+.+||..+.+-... +......- +++...++..++.|+.++ .+.+||..+
T Consensus 444 s~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t 522 (695)
T 2zwa_A 444 TFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTE 522 (695)
T ss_dssp EEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTT
T ss_pred EEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCC
Confidence 333344 666666655422 3588899887654322 11111111 222323788888888755 688888876
Q ss_pred ccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecC-CCEEEEeeC--C-----CcEEEEEccCCe-----
Q 040361 208 ARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVE-LDIVISGSK--D-----GTCVFHTLREGR----- 274 (413)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~-~~~l~s~~~--d-----g~i~vwd~~~~~----- 274 (413)
..... +.. .+ .+........++.+..+ +++++.|+. + ..+.+||+.+..
T Consensus 523 ~~W~~--~~~------~g----------~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~ 584 (695)
T 2zwa_A 523 EIFKD--VTP------KD----------EFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPI 584 (695)
T ss_dssp TEEEE--CCC------SS----------GGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCE
T ss_pred CceEE--ccC------CC----------CCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccce
Confidence 54211 000 00 00111111233445544 567777765 2 358899998776
Q ss_pred -EEEEEeCC-CCCceeeEEEccCCcEEEEECC--------CCeEEEEEeCCceeeeeecCCce----------eEEEecC
Q 040361 275 -YVRSLCHP-SGSALSKLAASRHGRIVLYGDD--------DLSLHLFSINGKHLASSESNGRL----------NCLELSA 334 (413)
Q Consensus 275 -~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~--------d~~i~i~d~~~~~~~~~~~~~~i----------~~~~~s~ 334 (413)
-...-..+ ....-.+++...++++++.|+. ...+.+||+....-......... .++....
T Consensus 585 ~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~p~~~~~~~~p~~~gh~~~~~~ 664 (695)
T 2zwa_A 585 TVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLTSIPISRRIWEDHSLMLAGFSLVSTS 664 (695)
T ss_dssp EEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEEECCCCHHHHHHSCCCCSSCEEECC-
T ss_pred EEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeEEEeeccccccCCCCccceeeeEEEeC
Confidence 22111111 1111122333333777777774 34689999986544322211111 2344445
Q ss_pred CCCEEEEeCC
Q 040361 335 CGQFLVCGGD 344 (413)
Q Consensus 335 ~~~~l~~~~~ 344 (413)
++++++.|+.
T Consensus 665 ~g~i~v~GGg 674 (695)
T 2zwa_A 665 MGTIHIIGGG 674 (695)
T ss_dssp --CEEEECCE
T ss_pred CCEEEEEeCC
Confidence 5677777763
No 343
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.73 E-value=0.81 Score=38.81 Aligned_cols=208 Identities=9% Similarity=0.048 Sum_probs=109.5
Q ss_pred CCCCEEEEeec-CCCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCC--------------CcEEEEEecc
Q 040361 143 PSENFLITCGN-WENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYD--------------TTVMVWEVIR 207 (413)
Q Consensus 143 ~~~~~l~~~g~-~d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d--------------g~i~iw~~~~ 207 (413)
.++..+..... .++.|+..+.+... ...+.. +. +--+++++.+|+-+... ..|+..+++.
T Consensus 23 ~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~--~~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg 97 (302)
T 3s25_A 23 ESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSN--DT--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNG 97 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEEETTSCS-CEEEEE--EE--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTS
T ss_pred EeCCEEEEEeCCCCceEEEEcCCCCC-CEEccC--Cc--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCC
Confidence 45666666543 25567777764333 333332 12 23456788888776543 2344444443
Q ss_pred ccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEee--C--CCcEEEEEccCCeEEEEEeCCC
Q 040361 208 ARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGS--K--DGTCVFHTLREGRYVRSLCHPS 283 (413)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~--~--dg~i~vwd~~~~~~~~~~~~~~ 283 (413)
.+ ...+... .+..|+++++.|+-.. . +..|...++.. .....+....
T Consensus 98 ~~------------------------~~~l~~~----~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dG-s~~~~lt~~~ 148 (302)
T 3s25_A 98 HG------------------------STVLDPD----PCIYASLIGNYIYYLHYDTQTATSLYRIRIDG-EEKKKIKNHY 148 (302)
T ss_dssp CC------------------------CEEEECS----CEEEEEEETTEEEEEEESSSSCEEEEEEETTS-CCCEEEESSC
T ss_pred Cc------------------------ceEeecC----CccEEEEeCCEEEEEeecCCCCceEEEEECCC-CCeEEEeCCC
Confidence 32 1112111 1235677888777654 3 34555556643 3333443321
Q ss_pred CCceeeEEEccCCcEEEEECC-CCeEEEEEeCCceeeeeecCCceeEEEecCCCCEEEEeCCC--CeEEEEECCCCceEE
Q 040361 284 GSALSKLAASRHGRIVLYGDD-DLSLHLFSINGKHLASSESNGRLNCLELSACGQFLVCGGDQ--GQIVVRSMNSLEVVR 360 (413)
Q Consensus 284 ~~~v~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d--g~i~v~d~~~~~~~~ 360 (413)
+ ..++++++.|+..+. ...|+..++++....... .+... ..+.|++++|+-...+ ..|..-++.... ..
T Consensus 149 ---~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~-~~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~ 220 (302)
T 3s25_A 149 ---L--FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFY-DCNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PV 220 (302)
T ss_dssp ---C--CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEE-CSCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC-CE
T ss_pred ---c--eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEe-CCCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC-eE
Confidence 1 346777888776655 678888888865544332 22222 3466999988876543 366666666544 33
Q ss_pred EecCCCCcEEEEEEccCCeEEE-E--cCCCeEEEEEecC
Q 040361 361 RYSGVGKIITSLAVTPEECFLA-G--TKDGCLLVYSIEN 396 (413)
Q Consensus 361 ~~~~~~~~v~~~~~~~~~~~l~-~--~~dg~i~vw~~~~ 396 (413)
.+. ...+. .|+|++..|- + ...+.|..-+++.
T Consensus 221 ~Lt--~~~~~--~~~~~g~~Iy~~~~~~~~~i~~~~~DG 255 (302)
T 3s25_A 221 VLT--EANIE--HYNVYGSLIFYQRGGDNPALCVVKNDG 255 (302)
T ss_dssp ECS--CSCEE--EEEEETTEEEEEECSSSCEEEEEETTS
T ss_pred EEe--CCCcc--eEEECCCEEEEEECCCCcEEEEEECCC
Confidence 343 22332 3666654332 2 2335566666554
No 344
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.63 E-value=0.47 Score=41.27 Aligned_cols=111 Identities=12% Similarity=0.131 Sum_probs=52.4
Q ss_pred CCCEEEEeeC------CCcEEEEEc--cCCeEEEEEeCCCC-CceeeEEEccCCcEEEEECCC-----------------
Q 040361 252 ELDIVISGSK------DGTCVFHTL--REGRYVRSLCHPSG-SALSKLAASRHGRIVLYGDDD----------------- 305 (413)
Q Consensus 252 ~~~~l~s~~~------dg~i~vwd~--~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d----------------- 305 (413)
++++++.|+. ...+..||+ .+.+-...-..+.. ......+...++++++.|+.+
T Consensus 200 ~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~ 279 (357)
T 2uvk_A 200 GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHE 279 (357)
T ss_dssp TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTT
T ss_pred CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccc
Confidence 4566666654 235677876 44332221111111 111222334467777777632
Q ss_pred -----CeEEEEEeCCceeeeee-c-CCceeEEEecCCCCEEEEeCCCC------eEEEEECCCCceEEEe
Q 040361 306 -----LSLHLFSINGKHLASSE-S-NGRLNCLELSACGQFLVCGGDQG------QIVVRSMNSLEVVRRY 362 (413)
Q Consensus 306 -----~~i~i~d~~~~~~~~~~-~-~~~i~~~~~s~~~~~l~~~~~dg------~i~v~d~~~~~~~~~~ 362 (413)
..+.+||+....-.... . .......+..-++++++.|+.++ .|.++++++++.+...
T Consensus 280 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~ 349 (357)
T 2uvk_A 280 GLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQN 349 (357)
T ss_dssp TCCCEECCEEEECC---CEEEEECSSCCBSSEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred cccceeeEEEEecCCCceeeCCCCCCCcccceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeee
Confidence 24778888744322211 1 11111122234678888887542 4666788887766543
No 345
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.44 E-value=0.98 Score=46.52 Aligned_cols=190 Identities=8% Similarity=0.053 Sum_probs=110.7
Q ss_pred CCCCCceeeecCCCCccccCCCcCCCcccCCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEcCC-CcEEEEe
Q 040361 94 LQSGGNFTFSGSQDPFFGVGADILSPRNVGSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIALND-GRVVQSI 172 (413)
Q Consensus 94 ~s~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~-~~~~~~~ 172 (413)
.+|..+.++--. ..++.+++.+...+ .....+...+.--.|..+...-++ + +..|+-|++.. ..+.+.+
T Consensus 73 MnP~~~iiALra-g~~lQiFnl~~k~k------lks~~~~e~VvfWkWis~~~l~lV-T--~~aVyHW~~~~~s~P~k~f 142 (1630)
T 1xi4_A 73 MNPASKVIALKA-GKTLQIFNIEMKSK------MKAHTMTDDVTFWKWISLNTVALV-T--DNAVYHWSMEGESQPVKMF 142 (1630)
T ss_pred cCCCcceEEEec-CCeEEEeehHHhhh------hcccccCCCceEEEecCCCeeEEE-c--CCeEEEeccCCCCccHHHH
Confidence 577777776554 56666654322221 122233455666777766655454 3 67899999964 3444444
Q ss_pred ecC----CCeEEEEEECCCCCEEEEcc-------CCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCC
Q 040361 173 RQH----RDVVSCVAVTTDGSILATGS-------YDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHD 241 (413)
Q Consensus 173 ~~h----~~~v~~~~~~~~~~~l~s~s-------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 241 (413)
..| ...|..-..+++.++++..| -.|.+.+|..+.+. .+.+.||.
T Consensus 143 dR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~------------------------sQ~iegha 198 (1630)
T 1xi4_A 143 DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------------------------SQPIEGHA 198 (1630)
T ss_pred hcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc------------------------chhhhHhH
Confidence 444 46677777888888876433 35788999887665 34455665
Q ss_pred CCeEEEEEec---CCCEEEEeeC---CCcEEEEEccCC---eE-----EEEEeCC---CCCceeeEEEccCCcEEEEECC
Q 040361 242 DIITCLYVSV---ELDIVISGSK---DGTCVFHTLREG---RY-----VRSLCHP---SGSALSKLAASRHGRIVLYGDD 304 (413)
Q Consensus 242 ~~i~~~~~~~---~~~~l~s~~~---dg~i~vwd~~~~---~~-----~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~ 304 (413)
+....+.... ....++.+.. .+.+++-++... .. ...+..+ .+.-..++..++....+..-+.
T Consensus 199 ~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk 278 (1630)
T 1xi4_A 199 ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK 278 (1630)
T ss_pred hhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEec
Confidence 5443333321 1122222221 267888887542 11 1111111 1223456778888788888899
Q ss_pred CCeEEEEEeCCce
Q 040361 305 DLSLHLFSINGKH 317 (413)
Q Consensus 305 d~~i~i~d~~~~~ 317 (413)
-|.+++||+.+..
T Consensus 279 ~G~~~~~d~~t~~ 291 (1630)
T 1xi4_A 279 YGYIHLYDLETGT 291 (1630)
T ss_pred CceEEEEecccch
Confidence 9999999998433
No 346
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=95.31 E-value=0.71 Score=38.72 Aligned_cols=204 Identities=11% Similarity=0.058 Sum_probs=101.3
Q ss_pred CCeEEEEEcCCCcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCce
Q 040361 155 ENSFQVIALNDGRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPF 234 (413)
Q Consensus 155 d~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (413)
||.|+.|-.+..-.+..-......|..++...+. .++. . ||.|..|-......... +.
T Consensus 41 ~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~-------------------P~ 98 (282)
T 3qhy_B 41 GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTV-------------------PA 98 (282)
T ss_dssp TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCC-------------------CG
T ss_pred CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCC-------------------Cc
Confidence 8889888764321111111122356677765443 3333 4 89999997654321100 10
Q ss_pred eeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeC
Q 040361 235 HILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSIN 314 (413)
Q Consensus 235 ~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~ 314 (413)
. -...|..++...+. .+.-. ||.|+.|-......+- ........|..++...+...+ -. ||.|+.|-.+
T Consensus 99 ~----~~~~v~~ia~G~~h--s~al~-~G~v~~wG~n~~gqlg-~~~~~~~~i~~i~~G~~~~~~--l~-~G~v~~wG~n 167 (282)
T 3qhy_B 99 E----ARSGVDAIAAGAWA--SYALK-DGKVIAWGDDSDGQTT-VPAEAQSGVTALDGGVYTALA--VK-NGGVIAWGDN 167 (282)
T ss_dssp G----GSSSEEEEEEETTE--EEEEE-TTEEEEEECCTTSTTS-CCGGGGSSEEEEEECSSEEEE--EE-TTEEEEEECC
T ss_pred c----cCCCeEEEECcCCE--EEEEe-CCeEEEecCCCCCcCC-CCccCCCCeEEEEcccCEEEE--EE-CCEEEEecCC
Confidence 0 12357777765443 33334 8999999764321110 011112345555544332222 23 6888888765
Q ss_pred --CceeeeeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEccCCeEEEEcCCCeEEEE
Q 040361 315 --GKHLASSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFLAGTKDGCLLVY 392 (413)
Q Consensus 315 --~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~dg~i~vw 392 (413)
++.-........|..++.-.+. .++. .||.|+.|=....-.+..-......|..++...+..+ +-. ||.|+.|
T Consensus 168 ~~gqlg~p~~~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~~-al~-~g~v~~w 242 (282)
T 3qhy_B 168 YFGQTTVPAEAQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYSL-ALK-NGKVIAW 242 (282)
T ss_dssp TTSTTSCCGGGGSSEEEEEECSSE-EEEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCEE-EEE-TTEEEEE
T ss_pred CCCCCCCceecCCCeEEEEecCCE-EEEE--ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCEEE-EEE-CCEEEEe
Confidence 2211111223456666654332 2333 5899999976542221111111234667766644333 333 8889888
Q ss_pred EecC
Q 040361 393 SIEN 396 (413)
Q Consensus 393 ~~~~ 396 (413)
-...
T Consensus 243 G~n~ 246 (282)
T 3qhy_B 243 GSSR 246 (282)
T ss_dssp STTC
T ss_pred cCCC
Confidence 6554
No 347
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=94.66 E-value=2.6 Score=38.71 Aligned_cols=72 Identities=11% Similarity=0.111 Sum_probs=52.7
Q ss_pred CceeEEEecCCCCEEEEeC-CCCeEEEEECCCC------ce-------EEEecCCCCcEEEEEEccCCeEE-EEcCCCeE
Q 040361 325 GRLNCLELSACGQFLVCGG-DQGQIVVRSMNSL------EV-------VRRYSGVGKIITSLAVTPEECFL-AGTKDGCL 389 (413)
Q Consensus 325 ~~i~~~~~s~~~~~l~~~~-~dg~i~v~d~~~~------~~-------~~~~~~~~~~v~~~~~~~~~~~l-~~~~dg~i 389 (413)
.....+.++|||+++++++ .+.++.++|.... +. +.+.+ -.-.....+|.++|... +---|..|
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfidSqv 401 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFIDSQV 401 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSSEEEEEETTTTEE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCCceEeeeeecceE
Confidence 4556789999999988765 4778999998742 11 33333 34456788999999654 46689999
Q ss_pred EEEEecCC
Q 040361 390 LVYSIENR 397 (413)
Q Consensus 390 ~vw~~~~~ 397 (413)
.-|++...
T Consensus 402 vkWni~~a 409 (638)
T 3sbq_A 402 VKWNMEEA 409 (638)
T ss_dssp EEEEHHHH
T ss_pred EEEeccHH
Confidence 99999764
No 348
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=93.82 E-value=3 Score=36.05 Aligned_cols=233 Identities=12% Similarity=0.090 Sum_probs=118.1
Q ss_pred eeEEEEecCCCCEEEEeecCCCeEEEEEcCCCcEEE--Ee----ecCCCeEEEEEECCC---CCEEEEc---cCCCcEEE
Q 040361 135 QCFTTMQTPSENFLITCGNWENSFQVIALNDGRVVQ--SI----RQHRDVVSCVAVTTD---GSILATG---SYDTTVMV 202 (413)
Q Consensus 135 ~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~~~~~~~--~~----~~h~~~v~~~~~~~~---~~~l~s~---s~dg~i~i 202 (413)
....+++.|+|..+++ -...|.|++++..+++... .+ .........|+++|+ +..|+.. ..++.|.-
T Consensus 33 ~P~~ia~~pdG~llVt-er~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R 111 (347)
T 3das_A 33 SPWGLAPLPGGDLLVS-SRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVR 111 (347)
T ss_dssp SEEEEEECTTSCEEEE-ETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEE
T ss_pred CceEEEEcCCCcEEEE-EecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEE
Confidence 3467888999986554 3237899999866565422 22 123467889999995 3344432 23445555
Q ss_pred EEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeC-------------CCcEEEEE
Q 040361 203 WEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSK-------------DGTCVFHT 269 (413)
Q Consensus 203 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~-------------dg~i~vwd 269 (413)
|.............. ...++...+ .-..|. -..|.|.|++.+.++.+. .|.|.-.+
T Consensus 112 ~~~~~~~~~~~~~~~-------~~~i~~~~p--~~~~H~--g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~ 180 (347)
T 3das_A 112 MLYDEKKPSGEQLGA-------PDTVFRGIP--KGVIHN--GGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMT 180 (347)
T ss_dssp EEBCTTSCTTCCBCC-------CEEEEEEEC--CCSSCC--CCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEEC
T ss_pred EEeCCCCcccccCCC-------cEEEEEcCC--CCCCcc--CccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEe
Confidence 555432100000000 000000000 012243 356899999987777542 24444444
Q ss_pred ccCCe--------EEEEEeCCCCCceeeEEEccCCcEEEEECC-CCeEEEEEeC-Cce------------------eeee
Q 040361 270 LREGR--------YVRSLCHPSGSALSKLAASRHGRIVLYGDD-DLSLHLFSIN-GKH------------------LASS 321 (413)
Q Consensus 270 ~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~d~~-~~~------------------~~~~ 321 (413)
.. +. ....+..... ....++|+|++.+.++-.. ++.=.+.-+. +.. +...
T Consensus 181 ~d-G~ip~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~ 258 (347)
T 3das_A 181 PD-GEPAPGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQW 258 (347)
T ss_dssp TT-SSBCTTCSSTTCCEEEBCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEE
T ss_pred CC-CCccCCCCCCCCeEEeeCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEec
Confidence 32 21 0011221211 3567899998876665432 2212222221 111 0111
Q ss_pred ecC-CceeEEEecCCCCEEEEeCCCCeEEEEECCCCce----EEEecCCCCcEEEEEEccCCeEEE
Q 040361 322 ESN-GRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEV----VRRYSGVGKIITSLAVTPEECFLA 382 (413)
Q Consensus 322 ~~~-~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~ 382 (413)
.+. .....++|. +|..++..-..+.|....+..... ..-+.+....+..++..|||.++.
T Consensus 259 ~~~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv 323 (347)
T 3das_A 259 STDEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWL 323 (347)
T ss_dssp CTTTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEE
T ss_pred CCCCCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEE
Confidence 111 245566776 466666666666676666654332 223344456799999999987554
No 349
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=93.19 E-value=3.2 Score=34.53 Aligned_cols=202 Identities=15% Similarity=0.063 Sum_probs=108.2
Q ss_pred cceeEEEEecCCCCEEEEeecCCCeEEEE---EcCCCcEEEEeecCCCeEEEEEECC-CCCEEEEccCCCcEEEEEeccc
Q 040361 133 GSQCFTTMQTPSENFLITCGNWENSFQVI---ALNDGRVVQSIRQHRDVVSCVAVTT-DGSILATGSYDTTVMVWEVIRA 208 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~g~~d~~i~i~---~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~dg~i~iw~~~~~ 208 (413)
+..+..+......+++++..+ +|.++-. ++..++....+. ....|..+.... +..+++..+.+|.++-..+..-
T Consensus 23 gD~~~~~~~~~t~~~ll~fT~-~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~ 100 (276)
T 3no0_A 23 KAPVVNILRVPFTEGLFLVSN-RGRVYWIAGSQALQGSKVSLKS-REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEF 100 (276)
T ss_dssp CCCEEEEEEEETTSCEEEEET-TSEEEEECSHHHHTSEECCCSS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGT
T ss_pred CCeEEEEEEECCCCEEEEEcC-CCeEEEEEhhhCccCcccccCC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHh
Confidence 344444444444455555444 7766643 333221111132 345566654421 4678999999999999887654
Q ss_pred cccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCC-------eEEEEEeC
Q 040361 209 RAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREG-------RYVRSLCH 281 (413)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-------~~~~~~~~ 281 (413)
. .... .. ....+.. .+.+..+........++..+..|.+..++...- +=+.-+..
T Consensus 101 ~-~~~~--G~--------------~~i~lke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L 162 (276)
T 3no0_A 101 E-YKAQ--GM--------------PIIKLTE-GDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKL 162 (276)
T ss_dssp T-TCST--TE--------------ECSCCCT-TCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCC
T ss_pred h-hhcC--Ce--------------EEEecCC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEcc
Confidence 3 1100 00 1112222 234444544455567888888999888775321 11122222
Q ss_pred CCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCc--------eeeeeecCCceeEEEecCCCCEEEEeCCCCeEEE--E
Q 040361 282 PSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGK--------HLASSESNGRLNCLELSACGQFLVCGGDQGQIVV--R 351 (413)
Q Consensus 282 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--------~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v--~ 351 (413)
..+..|..+...+++..++..+..|.++...+..- -+......+.+..+....+...++..+.+|.+.. +
T Consensus 163 ~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~ 242 (276)
T 3no0_A 163 EKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVSGTKDTLVDLIPIKEEVELLITTKNGKAFYDKI 242 (276)
T ss_dssp CTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECCCSSSCEEEEEEESSEEEEEEEETTSCEEEEEE
T ss_pred CCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEEcCCCcEEEEEEeCCCCEEEEEcCCCeEEEeee
Confidence 33445666655556678888888899888877421 1111123344444433333445666666777666 6
Q ss_pred ECC
Q 040361 352 SMN 354 (413)
Q Consensus 352 d~~ 354 (413)
+..
T Consensus 243 ~~~ 245 (276)
T 3no0_A 243 NQK 245 (276)
T ss_dssp EGG
T ss_pred CHH
Confidence 654
No 350
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=93.01 E-value=3.8 Score=34.84 Aligned_cols=197 Identities=9% Similarity=0.053 Sum_probs=110.4
Q ss_pred CCCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCc
Q 040361 185 TTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGT 264 (413)
Q Consensus 185 ~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~ 264 (413)
-++..++++.+.+|.|+--.+..-......-... ....+... +.+..+........++..+..|.
T Consensus 5 i~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~--------------~~~~lke~-D~l~~~~~~~~~~~ll~~T~~G~ 69 (312)
T 1suu_A 5 MQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGL--------------SSFDLNDG-DEIVIALCVNTHDYLFMISNEGK 69 (312)
T ss_dssp ---CEEEEEEETTCBEEEEEGGGSCBCCSSCCCE--------------ECCCCCTT-CCEEEEEEEETTCEEEEEETTSE
T ss_pred cCCCCEEEEEeCCCEEEEeEHHHhhccccCCCCc--------------eecccCCC-CEEEEEEEECCCCEEEEEECCCe
Confidence 3567788999999999987765443111000000 01112222 33444444455567788888998
Q ss_pred EEEEEccC---CeEEE-------EEeCCCCCceeeEEEcc---CCcEEEEECCCCeEEEEEeCC--------ceeeeeec
Q 040361 265 CVFHTLRE---GRYVR-------SLCHPSGSALSKLAASR---HGRIVLYGDDDLSLHLFSING--------KHLASSES 323 (413)
Q Consensus 265 i~vwd~~~---~~~~~-------~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~i~d~~~--------~~~~~~~~ 323 (413)
++-..... ..... .+....+..+..+...+ +..+++..+.+|.++...+.. ........
T Consensus 70 ~~~~~~~~ip~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~ 149 (312)
T 1suu_A 70 LYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND 149 (312)
T ss_dssp EEEEEGGGSCC-------CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT
T ss_pred EEEEEHHHCCCCCccCCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC
Confidence 77665432 11000 11122233455544332 456788889999999888742 11112233
Q ss_pred CCceeEEEecCCCCEEEEeCCCCeEEEEECCCC---------ceEEEecCCCCcEEEEEEcc-CCeEEEEcCCCeEEEEE
Q 040361 324 NGRLNCLELSACGQFLVCGGDQGQIVVRSMNSL---------EVVRRYSGVGKIITSLAVTP-EECFLAGTKDGCLLVYS 393 (413)
Q Consensus 324 ~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~---------~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~dg~i~vw~ 393 (413)
...+..+....++..++..+.+|.+..+....- .....+. ..+.|.++.... +..+++.+..|..+...
T Consensus 150 ~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~ 228 (312)
T 1suu_A 150 KDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVKENPYLLIVSENGYGKRLN 228 (312)
T ss_dssp TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC-TTCCEEEEEECTTCSEEEEEETTSEEEEEE
T ss_pred CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC-CCCEEEEEEEECCCCeEEEEECCCceEEEE
Confidence 556666666555677888889999988877531 1122232 245566665543 35577788889999888
Q ss_pred ecCC
Q 040361 394 IENR 397 (413)
Q Consensus 394 ~~~~ 397 (413)
+..-
T Consensus 229 ~~e~ 232 (312)
T 1suu_A 229 MSKI 232 (312)
T ss_dssp GGGS
T ss_pred HHHh
Confidence 8653
No 351
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=92.23 E-value=3.2 Score=34.69 Aligned_cols=142 Identities=11% Similarity=0.071 Sum_probs=72.8
Q ss_pred CeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeC--Cceeee
Q 040361 243 IITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSIN--GKHLAS 320 (413)
Q Consensus 243 ~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~ 320 (413)
.|..++..... .++. . ||.|+.|-......+- +.......|..++...+. .++-. +|.|+.|-.+ ++.-..
T Consensus 64 ~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg-~P~~~~~~v~~ia~G~~h--s~al~-~G~v~~wG~n~~gqlg~~ 136 (282)
T 3qhy_B 64 GVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTT-VPAEARSGVDAIAAGAWA--SYALK-DGKVIAWGDDSDGQTTVP 136 (282)
T ss_dssp CCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTC-CCGGGSSSEEEEEEETTE--EEEEE-TTEEEEEECCTTSTTSCC
T ss_pred CEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCC-CCcccCCCeEEEECcCCE--EEEEe-CCeEEEecCCCCCcCCCC
Confidence 46666654432 2333 4 8999988754321110 000011246556555433 33333 8899999765 222111
Q ss_pred eecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEecCCCCcEEEEEEccCCeEEEEcCCCeEEEEEecC
Q 040361 321 SESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYSGVGKIITSLAVTPEECFLAGTKDGCLLVYSIEN 396 (413)
Q Consensus 321 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~dg~i~vw~~~~ 396 (413)
......|..++...+. .+.-. ||.|+.|-....-.+..-..-...|..++...+..++. .||.|+.|-...
T Consensus 137 ~~~~~~i~~i~~G~~~--~~~l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~hs~al--~~G~v~~wG~n~ 207 (282)
T 3qhy_B 137 AEAQSGVTALDGGVYT--ALAVK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHSLAL--KDGKVIAWGDNR 207 (282)
T ss_dssp GGGGSSEEEEEECSSE--EEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEE--ETTEEEEEECCT
T ss_pred ccCCCCeEEEEcccCE--EEEEE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCCEEEEE--ECCeEEEEECCC
Confidence 2223456666554332 22223 68999997654222211111234688887765543333 699999997654
No 352
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=92.14 E-value=4.5 Score=33.63 Aligned_cols=154 Identities=15% Similarity=0.114 Sum_probs=94.3
Q ss_pred CCCeEEEEEec--CCCEEEEeeCCCcEEEEEccCCe----EEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeC
Q 040361 241 DDIITCLYVSV--ELDIVISGSKDGTCVFHTLREGR----YVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSIN 314 (413)
Q Consensus 241 ~~~i~~~~~~~--~~~~l~s~~~dg~i~vwd~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~ 314 (413)
...|..+.. + +...++..+.+|.++-..+.... -...+....+..+..+....+...++..+.+|.++.++..
T Consensus 67 ~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~ 145 (276)
T 3no0_A 67 EEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVR 145 (276)
T ss_dssp TCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGG
T ss_pred CCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhh
Confidence 445555543 4 46789999999999998875432 1112222234456666555566678888888998888764
Q ss_pred C----------ceeeeeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCC-------CceEEEecCCCCcEEEEEE-cc
Q 040361 315 G----------KHLASSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNS-------LEVVRRYSGVGKIITSLAV-TP 376 (413)
Q Consensus 315 ~----------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~-------~~~~~~~~~~~~~v~~~~~-~~ 376 (413)
. ........+..+..+...+++.+++..+..|.++...+.. ++-+..+. ..+.+..+.. ..
T Consensus 146 eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i~-~~~~lv~~~~~~~ 224 (276)
T 3no0_A 146 EVPPSTPGARGVQGIKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVSG-TKDTLVDLIPIKE 224 (276)
T ss_dssp GSCBCCTTCCCEECCCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECCC-SSSCEEEEEEESS
T ss_pred hCCCcCCCCCCEEEEccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEEc-CCCcEEEEEEeCC
Confidence 1 1111123345666666556677888889999998887643 22233332 2344555443 33
Q ss_pred CCeEEEEcCCCeEEE--EEecC
Q 040361 377 EECFLAGTKDGCLLV--YSIEN 396 (413)
Q Consensus 377 ~~~~l~~~~dg~i~v--w~~~~ 396 (413)
+..++..+.+|.+.. +++++
T Consensus 225 ~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 225 EVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp EEEEEEEETTSCEEEEEEEGGG
T ss_pred CCEEEEEcCCCeEEEeeeCHHH
Confidence 345667778888877 77765
No 353
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=89.71 E-value=12 Score=34.45 Aligned_cols=198 Identities=9% Similarity=0.033 Sum_probs=109.4
Q ss_pred CCCEEEEeecCCCeEEEEEcCCCcEEEEeec-CCCeEEEEEEC--CCCCEEEEccCC-------CcEEEEEecccccccc
Q 040361 144 SENFLITCGNWENSFQVIALNDGRVVQSIRQ-HRDVVSCVAVT--TDGSILATGSYD-------TTVMVWEVIRARAPEK 213 (413)
Q Consensus 144 ~~~~l~~~g~~d~~i~i~~~~~~~~~~~~~~-h~~~v~~~~~~--~~~~~l~s~s~d-------g~i~iw~~~~~~~~~~ 213 (413)
||+++++-.-.+..|-..++...++-+.++- ....+..++|. |+..|++.+++. |.. ..++..+ +
T Consensus 141 DGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~--~~~~~~~---~ 215 (638)
T 3sbq_A 141 DGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKV--FDLQDEN---S 215 (638)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSC--CCTTSTT---E
T ss_pred eeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcc--cccCChh---h
Confidence 5777887666677899999999888777764 45678888886 688888887653 221 0001100 0
Q ss_pred ccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCC-------------------------------
Q 040361 214 RVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKD------------------------------- 262 (413)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~d------------------------------- 262 (413)
. ..+.........+ .. .+. + .+....+...+++.+.++.+.+
T Consensus 216 y-~~f~~iD~~tm~v-~~-Qv~-v---~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk 288 (638)
T 3sbq_A 216 Y-TMYNAIDAETMEM-AF-QVI-V---DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVK 288 (638)
T ss_dssp E-EEEEEEETTTCSE-EE-EEE-E---SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHH
T ss_pred c-eEEEEEcCCccEE-EE-EEE-c---CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHh
Confidence 0 0000000000000 00 000 0 1111122233344443333221
Q ss_pred --------C-cEEEEEccC----Ce-EEEEEeCCCCCceeeEEEccCCcEEEEECC-CCeEEEEEeCC-------ce---
Q 040361 263 --------G-TCVFHTLRE----GR-YVRSLCHPSGSALSKLAASRHGRIVLYGDD-DLSLHLFSING-------KH--- 317 (413)
Q Consensus 263 --------g-~i~vwd~~~----~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~d~~~-------~~--- 317 (413)
| .+.+.|.+. +. ..+-+..+ .....+.++|||+++++++. +.++.++|.+. +.
T Consensus 289 ~G~~~~~~g~gv~ViD~~~~~~~~~~~~~~iP~p--ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~ 366 (638)
T 3sbq_A 289 AGDFITLGDSKTPVLDGRKKDGKDSKFTRYVPVP--KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADP 366 (638)
T ss_dssp TTCCBCCTTCCCCEEECSCBTTBCCSSEEEEEES--SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCG
T ss_pred cCCeEEECCCCeeEEccccccccCCceEEEEeCC--CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCc
Confidence 1 245555544 21 22222222 24567899999999888764 67899999862 11
Q ss_pred ----eeeeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCC
Q 040361 318 ----LASSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNS 355 (413)
Q Consensus 318 ----~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~ 355 (413)
.......-.....+|.++|.-..+---|..|.-|++..
T Consensus 367 ~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 367 RDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp GGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHH
T ss_pred ccceEeeccCCCcccEEEECCCCceEeeeeecceEEEEeccH
Confidence 11223445678899999996556666899999999865
No 354
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=85.86 E-value=25 Score=35.19 Aligned_cols=72 Identities=11% Similarity=0.181 Sum_probs=47.1
Q ss_pred CeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeCCCC----CceeeEEEcc-CCcEEEE---ECCCCeEEEEEeC
Q 040361 243 IITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCHPSG----SALSKLAASR-HGRIVLY---GDDDLSLHLFSIN 314 (413)
Q Consensus 243 ~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~----~~v~~~~~~~-~~~~l~~---~~~d~~i~i~d~~ 314 (413)
.+.+++..++..++++-+.|+++++|++.+++++.+...... .........+ .+.++.+ -..+|..++|.+.
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~~~~~~~~~~~~~~~~~~~~~~i~v~~s~~~~g~F~~~~~~ 316 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELSQTILPLQSFPYLTSDHTTNSFIALYYPDNSHGSFSIYKLN 316 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEECCCCCCCSCCCCCEEECSSSTTEEEEEECCSSSCEEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecccccCCccccccccccCCCcccEEEEEEcCCCCcEEEEEEEe
Confidence 567777888888999999999999999999999988653211 1112223333 2333332 2345677777664
No 355
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=84.19 E-value=31 Score=33.20 Aligned_cols=228 Identities=11% Similarity=0.072 Sum_probs=117.6
Q ss_pred ecCCCCEEEEeecCCC----eEEEEEcCCCcEEE-Eee-cCCC------eEEEEEECCCCCEEEEccC-----------C
Q 040361 141 QTPSENFLITCGNWEN----SFQVIALNDGRVVQ-SIR-QHRD------VVSCVAVTTDGSILATGSY-----------D 197 (413)
Q Consensus 141 ~~~~~~~l~~~g~~d~----~i~i~~~~~~~~~~-~~~-~h~~------~v~~~~~~~~~~~l~s~s~-----------d 197 (413)
++|++++++++-+..| .++++|+.+++.+. .+. .-.. ....++|..+ ..++.+.. .
T Consensus 137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~-~~~~~~~~~~~~~~~~~~~~ 215 (711)
T 4hvt_A 137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINK-DTIIFNLVLHKNEITSSLYP 215 (711)
T ss_dssp CSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEET-TEEEECCCCSTTCBCTTSSB
T ss_pred cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECC-CEEEEEeCCCCCCcCcCCCC
Confidence 6889998887655444 79999999988763 111 0000 1134477633 34443321 2
Q ss_pred CcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCe-EEEEEecCCC-----EEEEeeCC---CcEEEE
Q 040361 198 TTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDII-TCLYVSVELD-----IVISGSKD---GTCVFH 268 (413)
Q Consensus 198 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i-~~~~~~~~~~-----~l~s~~~d---g~i~vw 268 (413)
..|+.|.+-+.... -...+.+....+ .....+++++ .+++.+.+ ..+.+.
T Consensus 216 ~~v~~~~~Gt~~~~---------------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 274 (711)
T 4hvt_A 216 NSLYIWKRGESIEK---------------------AKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYIL 274 (711)
T ss_dssp CEEEEEETTSCGGG---------------------CEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEE
T ss_pred CEEEEEECCCChHH---------------------CeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEE
Confidence 44666666544311 122233333332 2344455555 24443322 345555
Q ss_pred EccC--CeEEEEEeCCCCCceeeEEEccCCcEEEEEC----------CCCeEEEEEeCCc--------ee---eeeecCC
Q 040361 269 TLRE--GRYVRSLCHPSGSALSKLAASRHGRIVLYGD----------DDLSLHLFSINGK--------HL---ASSESNG 325 (413)
Q Consensus 269 d~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~i~d~~~~--------~~---~~~~~~~ 325 (413)
|... ++ ...+..+.... +....++.+++... ..+.|...|+... .. .......
T Consensus 275 ~~~~~~~~-~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (711)
T 4hvt_A 275 DTKYKNLK-LQKINMPSDAT---LQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANE 350 (711)
T ss_dssp ECSSSSCE-EEECCSCTTCE---EEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTE
T ss_pred cCCCCCCc-ceEeecCCcce---EeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCC
Confidence 6543 33 33344333222 23445565555332 3567888887631 11 1123445
Q ss_pred ceeEEEecCCCCEEEEeCCCCe--EEEEECCCCc-eEEE-ecCC-CCcEEEEEEccCC-eEE-E-Ec--CCCeEEEEEec
Q 040361 326 RLNCLELSACGQFLVCGGDQGQ--IVVRSMNSLE-VVRR-YSGV-GKIITSLAVTPEE-CFL-A-GT--KDGCLLVYSIE 395 (413)
Q Consensus 326 ~i~~~~~s~~~~~l~~~~~dg~--i~v~d~~~~~-~~~~-~~~~-~~~v~~~~~~~~~-~~l-~-~~--~dg~i~vw~~~ 395 (413)
.+..+.+..+ .++++...++. +.++|+.+++ .... +... .+.+.....++++ .++ + .+ .-+.+..+++.
T Consensus 351 ~l~~~~~~~~-~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 351 VFNFISTTKD-RVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEEEEEECSS-CEEEEEEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred eEEEEEEECC-EEEEEEEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 6778888865 56667766764 6677776664 2233 3222 2456666666664 333 3 33 34667777765
No 356
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=84.10 E-value=18 Score=30.50 Aligned_cols=204 Identities=13% Similarity=0.084 Sum_probs=106.2
Q ss_pred cceeEEEEecCCCCEEEEeecCCCeEEEEEc---CC------CcEEE---EeecCCCeEEEEEE-C--CCCCEEEEccCC
Q 040361 133 GSQCFTTMQTPSENFLITCGNWENSFQVIAL---ND------GRVVQ---SIRQHRDVVSCVAV-T--TDGSILATGSYD 197 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~---~~------~~~~~---~~~~h~~~v~~~~~-~--~~~~~l~s~s~d 197 (413)
+..+..+......+.+++... .|.++-+.. .. |..+. .+. ....|..+.. . .++.+++..+.+
T Consensus 41 ~D~l~~~~~~~~~~~ll~fT~-~G~~~~~~~~elp~~~~~a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~ 118 (307)
T 1zi0_A 41 EDFIDRLLVANTHDHILCFSS-RGRVYSMKVYQLPEATRGARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATAN 118 (307)
T ss_dssp -CCEEEEEEEETTCEEEEEET-TSEEEEEEGGGSCCCCSSSCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETT
T ss_pred CCEEEEEEEECCCCEEEEEEC-CCEEEEEEhhHCcCCCCCCCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCC
Confidence 444444444445555555444 787666554 21 22211 122 2344555543 2 356688899999
Q ss_pred CcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCC----
Q 040361 198 TTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREG---- 273 (413)
Q Consensus 198 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~---- 273 (413)
|.++--.+..-....+ ... ....+..+ +.+..+....+...++..+.+|.+..++...-
T Consensus 119 G~~Krt~l~e~~~~~r--~G~--------------~~i~l~~~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~g 181 (307)
T 1zi0_A 119 GTVKKTVLTEFNRLRT--AGK--------------VAIKLVDG-DELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMG 181 (307)
T ss_dssp SEEEEEEGGGGTTCCT--TCE--------------ESSCCCTT-CCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCC
T ss_pred CeEEEEEHHHhhcccc--CCe--------------EEEEECCC-CEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccC
Confidence 9999988764432111 000 11123333 44555544455567778888998888876421
Q ss_pred ---eEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCce--------eee--e-ecCCceeEEEecCCCCEE
Q 040361 274 ---RYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGKH--------LAS--S-ESNGRLNCLELSACGQFL 339 (413)
Q Consensus 274 ---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--------~~~--~-~~~~~i~~~~~s~~~~~l 339 (413)
+-+.-+....+..|.++....++..++..+..|.++..++..-. ... . ...+.+..+....+...+
T Consensus 182 r~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~~~~~~~~~~lv~~~~v~~~~~l 261 (307)
T 1zi0_A 182 CNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQI 261 (307)
T ss_dssp TTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEESSCCCTTTCSEEEEEEECTTCEE
T ss_pred CCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCEEeeEecCCCCeEEEEEEeCCCceE
Confidence 11222333334566666655556678888888998888774211 111 1 122344444333334445
Q ss_pred EEeCCCCeEEEEECCC
Q 040361 340 VCGGDQGQIVVRSMNS 355 (413)
Q Consensus 340 ~~~~~dg~i~v~d~~~ 355 (413)
+..+.+|.+.-++...
T Consensus 262 ~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 262 MMITDAGTLVRTRVSE 277 (307)
T ss_dssp EEEESSCCEEEEEGGG
T ss_pred EEEcCCCcEEEEeccc
Confidence 5555666655555543
No 357
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=82.01 E-value=20 Score=29.35 Aligned_cols=140 Identities=15% Similarity=0.158 Sum_probs=77.4
Q ss_pred EEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeC--------Ccee---eeeec
Q 040361 255 IVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSIN--------GKHL---ASSES 323 (413)
Q Consensus 255 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~--------~~~~---~~~~~ 323 (413)
.+++.+.+|.|+--...... ...+....+..+..+........++..+..|.++-+... |..+ .....
T Consensus 4 v~v~lT~~G~iKr~~~~~~~-~~~~~lke~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~~ 82 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDID-APGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPP 82 (256)
T ss_dssp EEEEEETTSEEEEEESSCCC-STTSCCCTTCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCCT
T ss_pred EEEEEeCCCEEEEeeCCcCC-ceeccCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCCC
Confidence 45566777777655432211 001111223344444444444556666667776665542 1111 11233
Q ss_pred CCceeEEEecCCCCEEEEeCCCCeEEEEECCC-------CceEEEecCCCCcEEEEEEc--cCCeEEEEcCCCeEEEEEe
Q 040361 324 NGRLNCLELSACGQFLVCGGDQGQIVVRSMNS-------LEVVRRYSGVGKIITSLAVT--PEECFLAGTKDGCLLVYSI 394 (413)
Q Consensus 324 ~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~-------~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~dg~i~vw~~ 394 (413)
...|..+....++.+|+.++..|.++...+.. +.....+.. .+.+..+... .+..++..+.+|.+..+.+
T Consensus 83 ~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~-~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~~ 161 (256)
T 1zvt_A 83 GATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPE-NAHVMPPVVIEDASDMLLAITQAGRMLMFPV 161 (256)
T ss_dssp TCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCT-TCCBCCCEECCCTTCEEEEEETTSEEEEEEG
T ss_pred CCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECC-CCEEEEEEEecCCCCEEEEEcCCCeEEEEEH
Confidence 45666664444667888999999999987743 223333332 3445555454 3456777888899888888
Q ss_pred cC
Q 040361 395 EN 396 (413)
Q Consensus 395 ~~ 396 (413)
+.
T Consensus 162 ~e 163 (256)
T 1zvt_A 162 SD 163 (256)
T ss_dssp GG
T ss_pred HH
Confidence 65
No 358
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=81.01 E-value=24 Score=29.79 Aligned_cols=240 Identities=10% Similarity=0.058 Sum_probs=123.7
Q ss_pred CCCCEEEEeecCCCeEEEEEcCCCcE-------EE--EeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEecccccccc
Q 040361 143 PSENFLITCGNWENSFQVIALNDGRV-------VQ--SIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEK 213 (413)
Q Consensus 143 ~~~~~l~~~g~~d~~i~i~~~~~~~~-------~~--~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~ 213 (413)
++...++. -+.+|.|+-..+..-+. .. .++. .+.+..+........++..+..|.++-.....-.....
T Consensus 6 ~~e~~~v~-~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke-~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r 83 (312)
T 1suu_A 6 QKENIVVM-LTKKGFLKRLSQNEYKLQGTGGKGLSSFDLND-GDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSR 83 (312)
T ss_dssp --CEEEEE-EETTCBEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC---
T ss_pred CCCCEEEE-EeCCCEEEEeEHHHhhccccCCCCceecccCC-CCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCc
Confidence 34445554 44589888876643211 11 1222 23444444444555677778888877666543211000
Q ss_pred ccccceeecCCCceeeecCceeeeecCCCCeEEEEEec---CCCEEEEeeCCCcEEEEEccCCeE-----EEEEeCCCCC
Q 040361 214 RVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSV---ELDIVISGSKDGTCVFHTLREGRY-----VRSLCHPSGS 285 (413)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~---~~~~l~s~~~dg~i~vwd~~~~~~-----~~~~~~~~~~ 285 (413)
.-... + .. ....+.. ...|.++...+ +..+++..+..|.++...+..... +..+....+.
T Consensus 84 ~~~G~----~------i~-~~l~l~~-~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d 151 (312)
T 1suu_A 84 ASKGQ----N------IS-ELINLGD-QEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKD 151 (312)
T ss_dssp ----C----B------GG-GTSCCCT-TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTC
T ss_pred cCCCc----C------hh-hccCCCC-CCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCC
Confidence 00000 0 00 0111222 23444443332 456788899999999888743211 1222222344
Q ss_pred ceeeEEEccCCcEEEEECCCCeEEEEEeCCc----------eeeeeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCC
Q 040361 286 ALSKLAASRHGRIVLYGDDDLSLHLFSINGK----------HLASSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNS 355 (413)
Q Consensus 286 ~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~----------~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~ 355 (413)
.+..+........++..+.+|.+..+....- ..........+..+..-.++..+++.+..|..+..++..
T Consensus 152 ~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 152 FVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp CEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred EEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 5555555555567888888899888877421 111123345566665555667788888999998888753
Q ss_pred Cce-------EEEe--c-CCCCcEEE-EEEccCCeEEEEcCCCeEEEEEecC
Q 040361 356 LEV-------VRRY--S-GVGKIITS-LAVTPEECFLAGTKDGCLLVYSIEN 396 (413)
Q Consensus 356 ~~~-------~~~~--~-~~~~~v~~-~~~~~~~~~l~~~~dg~i~vw~~~~ 396 (413)
... +..+ . .....+.. ..+.++..++..+..|.+.-..+.+
T Consensus 232 ~~~~~R~~kGv~~~~~~k~~~~~lv~~~~~~~~~~l~~~t~~g~~~r~~~~~ 283 (312)
T 1suu_A 232 ISELKRGATGYTSYKKSDKKAGSVVDAIAVSEDDEILLVSKRSKALRTVAGK 283 (312)
T ss_dssp SCBCCTTCCCEECSCTTCTTTCSEEEEEEECTTCEEEEEETTCEEEEEEGGG
T ss_pred hcccCCCCCCEEeeEccCCCCCeEEEEEEeCCCCEEEEEeCCCeEEEEEccc
Confidence 211 1112 1 12234433 3455555666666667554445544
No 359
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=79.97 E-value=27 Score=29.73 Aligned_cols=155 Identities=12% Similarity=0.082 Sum_probs=92.2
Q ss_pred CCeEEEEEec---CCCEEEEeeCCCcEEEEEccCCeE-----EEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEe
Q 040361 242 DIITCLYVSV---ELDIVISGSKDGTCVFHTLREGRY-----VRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSI 313 (413)
Q Consensus 242 ~~i~~~~~~~---~~~~l~s~~~dg~i~vwd~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~ 313 (413)
..|.++..-+ +..+++.++.+|.++--.+..... +..+....+..+..+........++..+..|.+..+..
T Consensus 95 e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~ 174 (327)
T 3uc1_A 95 ERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSA 174 (327)
T ss_dssp CCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEC
T ss_pred CEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEEC
Confidence 4455444333 467999999999999988754221 11222222345555555555567777788888887766
Q ss_pred C--Ccee----------eeeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCc-------eEEEec--CCCCcEEEE
Q 040361 314 N--GKHL----------ASSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLE-------VVRRYS--GVGKIITSL 372 (413)
Q Consensus 314 ~--~~~~----------~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~-------~~~~~~--~~~~~v~~~ 372 (413)
. .-.. ........|.++...+++.+++..+..|.++.-.+.... -+..+. .-.+.+..+
T Consensus 175 ~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~ 254 (327)
T 3uc1_A 175 TDEALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGA 254 (327)
T ss_dssp CTTTSCCCCTTSBCEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEE
T ss_pred cccccCcCCcCCCCeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEE
Confidence 5 2111 112334557777666667789999999999887764322 122222 213345554
Q ss_pred EEc-cCCeEEEEcCCCeEEEEEecC
Q 040361 373 AVT-PEECFLAGTKDGCLLVYSIEN 396 (413)
Q Consensus 373 ~~~-~~~~~l~~~~dg~i~vw~~~~ 396 (413)
... .+..++..+.+|.+.-+++..
T Consensus 255 ~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 255 LIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp EEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred EEeCCCccEEEEcCCCeEEEEehhh
Confidence 433 345666677778877777654
No 360
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=79.16 E-value=29 Score=29.53 Aligned_cols=165 Identities=8% Similarity=0.091 Sum_probs=88.4
Q ss_pred cceeEEEEecCCCCEEEEeecCCCeEEEEEcC---------CCcEEEE-eec-CCCeEEEE-EECC--CCCEEEEccCCC
Q 040361 133 GSQCFTTMQTPSENFLITCGNWENSFQVIALN---------DGRVVQS-IRQ-HRDVVSCV-AVTT--DGSILATGSYDT 198 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~~---------~~~~~~~-~~~-h~~~v~~~-~~~~--~~~~l~s~s~dg 198 (413)
+..+..+......+.+++..+ .|.++-+... .|..+.. +.- ....|..+ .... ++.+|+.++.+|
T Consensus 38 ~D~l~~~~~~~t~d~ll~fT~-~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G 116 (323)
T 1wp5_A 38 TDRLLAMLEMNTKDVLLLFTN-KGNYLYCPVHELPDIRWKDLGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNG 116 (323)
T ss_dssp TCCEEEEEEEETTSEEEEEET-TSEEEEEEGGGSCBCCTTSCCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTS
T ss_pred CCEEEEEEEECCCCEEEEEEC-CCEEEEEEHHHCcCCCCCCCCcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCC
Confidence 444555444445555555454 7876665542 1222111 111 22345544 4432 256889999999
Q ss_pred cEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccC------
Q 040361 199 TVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLRE------ 272 (413)
Q Consensus 199 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~------ 272 (413)
.++--.+..-..... -... ....+..- +.+..+........++..+.+|.+..++...
T Consensus 117 ~iKrt~l~e~~~~~r-~~G~--------------~ai~l~e~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR 180 (323)
T 1wp5_A 117 MVKKTELKHYKAQRY-SKPL--------------TGINLKND-DQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGV 180 (323)
T ss_dssp EEEEEEGGGGCCSCC-SSCE--------------ECSCCCTT-CCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCS
T ss_pred eEEEeEHHHhhhccc-cCce--------------EEEEeCCC-CEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCC
Confidence 999988765442110 0000 11122222 4454554545556788888899988887642
Q ss_pred -CeEEEEEeCCCCCceeeEEEccCCc-EEEEECCCCeEEEEEeC
Q 040361 273 -GRYVRSLCHPSGSALSKLAASRHGR-IVLYGDDDLSLHLFSIN 314 (413)
Q Consensus 273 -~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~ 314 (413)
.+-++-+....+..|.++..-+++. .+++.+..|..+..++.
T Consensus 181 ~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~ 224 (323)
T 1wp5_A 181 RAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLT 224 (323)
T ss_dssp SCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGG
T ss_pred CCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHH
Confidence 1122323333344566665444444 67777888888887774
No 361
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=78.91 E-value=32 Score=29.99 Aligned_cols=180 Identities=7% Similarity=-0.031 Sum_probs=95.3
Q ss_pred eEEEEEcCCC--cEEEEeecC------CCeEEEEEEC---CC----CCEE-EEccCCCcEEEEEecccccccccccccee
Q 040361 157 SFQVIALNDG--RVVQSIRQH------RDVVSCVAVT---TD----GSIL-ATGSYDTTVMVWEVIRARAPEKRVRNMQI 220 (413)
Q Consensus 157 ~i~i~~~~~~--~~~~~~~~h------~~~v~~~~~~---~~----~~~l-~s~s~dg~i~iw~~~~~~~~~~~~~~~~~ 220 (413)
.|.+||+.++ ++++.+.-. ...+..+.+. |+ +.+. ++=+..+-|.++|+.+++.-...... +
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~--~ 201 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPT--F 201 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGG--G
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCC--C
Confidence 6889999999 998877532 3457778876 22 2333 33334678999999887743222111 1
Q ss_pred ecC-CCceeeecCceeeeecCCCCeEEEEEecC----CCEEEEeeCCC-cEEEEE---ccCC---eEEEEEeCC-CCCce
Q 040361 221 EAP-RKDYVIVETPFHILCGHDDIITCLYVSVE----LDIVISGSKDG-TCVFHT---LREG---RYVRSLCHP-SGSAL 287 (413)
Q Consensus 221 ~~~-~~~~~~~~~~~~~~~~h~~~i~~~~~~~~----~~~l~s~~~dg-~i~vwd---~~~~---~~~~~~~~~-~~~~v 287 (413)
.+. .....+.+... . -...+..|+++|+ ++.|.-....+ .++--. +++. ..+..+... ....-
T Consensus 202 ~pd~~~~~~i~G~~~-~---~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~ 277 (381)
T 3q6k_A 202 KAERPTKFDYGGKEY-E---FKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDA 277 (381)
T ss_dssp SCCSCEEEEETTEEE-E---ECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCE
T ss_pred ccccCcceEECCEEe-E---eccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCc
Confidence 111 01111111111 1 1356889999997 56665444433 233222 1121 112222111 01233
Q ss_pred eeEEEc-cCCcEEEEECCCCeEEEEEeCC-c----eeeeee---cCCceeEEEecCCCCEEEEe
Q 040361 288 SKLAAS-RHGRIVLYGDDDLSLHLFSING-K----HLASSE---SNGRLNCLELSACGQFLVCG 342 (413)
Q Consensus 288 ~~~~~~-~~~~~l~~~~~d~~i~i~d~~~-~----~~~~~~---~~~~i~~~~~s~~~~~l~~~ 342 (413)
..++++ .+|.++++--....|..|+.++ . ...... .-..+..+.+.++|.+.+..
T Consensus 278 ~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 278 IALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp EEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred ceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence 446675 6788888888888999999876 2 112211 12235666666555544444
No 362
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=74.62 E-value=39 Score=28.75 Aligned_cols=204 Identities=13% Similarity=0.104 Sum_probs=110.7
Q ss_pred cceeEEEEecCCCCEEEEeecCCCeEEEEE---cCC------CcEEEEe-e-cCCCeEEEE-EECC--CCCEEEEccCCC
Q 040361 133 GSQCFTTMQTPSENFLITCGNWENSFQVIA---LND------GRVVQSI-R-QHRDVVSCV-AVTT--DGSILATGSYDT 198 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~---~~~------~~~~~~~-~-~h~~~v~~~-~~~~--~~~~l~s~s~dg 198 (413)
+..+..+......+.+++..+ .|.++-.. +.. |..+..+ . .....|..+ .... +..+++..+.+|
T Consensus 41 ~D~~~~~~~~~t~d~ll~fT~-~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G 119 (327)
T 3uc1_A 41 DDIVAHFFVCSTHDLILFFTT-QGRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNG 119 (327)
T ss_dssp GGCEEEEEEEETTSEEEEEET-TSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTS
T ss_pred CCEEEEEEEeCCCCEEEEEeC-CCeEEEEEHHHCcCCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCC
Confidence 444454444455555555444 77666554 322 2222111 1 123445444 4432 578999999999
Q ss_pred cEEEEEeccccccccccccceeecCCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEcc--CCe--
Q 040361 199 TVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLR--EGR-- 274 (413)
Q Consensus 199 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~--~~~-- 274 (413)
.++--.+..-....+ ... ....+.. .+.+..+........++..+..|.+..+... .-.
T Consensus 120 ~iKr~~l~~~~~~~r--~G~--------------~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~ 182 (327)
T 3uc1_A 120 LVKKSKLTDFDSNRS--GGI--------------VAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPM 182 (327)
T ss_dssp EEEEEEGGGGCCCCS--SCE--------------ESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCC
T ss_pred EEEEeEHHHhhcccc--Cce--------------EEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcC
Confidence 999888766442111 000 1122333 3344444444555678888889988877665 211
Q ss_pred -----EEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCCc--------eeeee--ec-CCceeEEEecCCCCE
Q 040361 275 -----YVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSINGK--------HLASS--ES-NGRLNCLELSACGQF 338 (413)
Q Consensus 275 -----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--------~~~~~--~~-~~~i~~~~~s~~~~~ 338 (413)
=+.-+....+..|.++...+++..++..+..|.++.-.+..- -+... .. .+.+..+....+...
T Consensus 183 gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~ 262 (327)
T 3uc1_A 183 GRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSE 262 (327)
T ss_dssp CTTSBCEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCE
T ss_pred CcCCCCeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCcc
Confidence 111222233456777766666678888889999988876421 11111 11 334544444444556
Q ss_pred EEEeCCCCeEEEEECC
Q 040361 339 LVCGGDQGQIVVRSMN 354 (413)
Q Consensus 339 l~~~~~dg~i~v~d~~ 354 (413)
++..+.+|.+.-++..
T Consensus 263 i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 263 LYAVTSGGGVIRTAAR 278 (327)
T ss_dssp EEEEEGGGCEEEEEGG
T ss_pred EEEEcCCCeEEEEehh
Confidence 6666777777777654
No 363
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=73.80 E-value=45 Score=29.05 Aligned_cols=138 Identities=12% Similarity=0.059 Sum_probs=68.4
Q ss_pred CeEEEEEecC--CCEEEEeeCCCcEEEEEccCCeEEEEEeC------------------CCCCceeeEEEccC-CcEEEE
Q 040361 243 IITCLYVSVE--LDIVISGSKDGTCVFHTLREGRYVRSLCH------------------PSGSALSKLAASRH-GRIVLY 301 (413)
Q Consensus 243 ~i~~~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~------------------~~~~~v~~~~~~~~-~~~l~~ 301 (413)
.|.++++.|. ...+..+...+.|...+- .++.-..+.. .....+..+.++|. ...+++
T Consensus 116 ~i~~l~~~~~~~~~~l~~g~~~ggl~~S~D-gG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~v 194 (394)
T 3b7f_A 116 HVFWLTPGHASEPGTWYAGTSPQGLFRSTD-HGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYI 194 (394)
T ss_dssp EEEEEEECCTTSTTCEEEEEETTEEEEESS-TTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEE
T ss_pred ceeEEEeCCCCCCCEEEEEecCCcEEEEcC-CCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEE
Confidence 5778888862 445555555565554421 2222222210 11235778888873 444555
Q ss_pred ECCCCeEEEEEeCCceeeeeec--------------CCceeEEEecCC-CCEEEEeCCCCeEEEEECCCCceEEEecC--
Q 040361 302 GDDDLSLHLFSINGKHLASSES--------------NGRLNCLELSAC-GQFLVCGGDQGQIVVRSMNSLEVVRRYSG-- 364 (413)
Q Consensus 302 ~~~d~~i~i~d~~~~~~~~~~~--------------~~~i~~~~~s~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-- 364 (413)
+..++.|...+-.++.-..... ...+.+++++|+ ...|+++...+ |...+- .++....+..
T Consensus 195 g~~~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~D-~G~tW~~~~~~l 272 (394)
T 3b7f_A 195 GMSSGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMDR-REGVWKRIGDAM 272 (394)
T ss_dssp EEETBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEET-TTTEEECGGGGS
T ss_pred EECCCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeCC-CCCcceECCCCC
Confidence 5444445444333433222110 124788999986 35666665544 444432 2333333321
Q ss_pred CC---CcEEEEEEccC--CeEEEE
Q 040361 365 VG---KIITSLAVTPE--ECFLAG 383 (413)
Q Consensus 365 ~~---~~v~~~~~~~~--~~~l~~ 383 (413)
.. ..+.++.++|. +.+.++
T Consensus 273 ~~~~~~~~~~i~~~p~~~~~l~~~ 296 (394)
T 3b7f_A 273 PREVGDIGFPIVVHQRDPRTVWVF 296 (394)
T ss_dssp CTTTCSCEEEEEECSSCTTCEEEE
T ss_pred CCCCccceEEEEECCCCCCEEEEE
Confidence 11 34567888764 455554
No 364
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=73.61 E-value=45 Score=28.98 Aligned_cols=241 Identities=13% Similarity=0.085 Sum_probs=124.0
Q ss_pred cCCCCEEEEeecCCCeEEEEEcCC---------CcEEEEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccc
Q 040361 142 TPSENFLITCGNWENSFQVIALND---------GRVVQSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPE 212 (413)
Q Consensus 142 ~~~~~~l~~~g~~d~~i~i~~~~~---------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~ 212 (413)
.++...++.. +.+|.|+--.+.. |.....++ ..+.+..+........|+..+..|.+.-+....-....
T Consensus 4 I~~e~~~v~l-T~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~ 81 (370)
T 3l6v_A 4 IAPEDVVVTL-SHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAG 81 (370)
T ss_dssp CCCCCEEEEE-ESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCC
T ss_pred ccCCCEEEEE-eCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCC
Confidence 3556666554 4489988765421 22333343 34556555555556667767777877665543221100
Q ss_pred cccccceeecCCCceeeecCceeeeecCCCCeEEEEEec---CCCEEEEeeCCCcEEEEEccCCeE-----EEEEeCCCC
Q 040361 213 KRVRNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVSV---ELDIVISGSKDGTCVFHTLREGRY-----VRSLCHPSG 284 (413)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~---~~~~l~s~~~dg~i~vwd~~~~~~-----~~~~~~~~~ 284 (413)
+.-... . .. ....+. ....|.++..-. +..+++.++..|.++...+..... +..+....+
T Consensus 82 r~a~G~---------~-i~-~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~ 149 (370)
T 3l6v_A 82 SNARGR---------P-II-NWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEG 149 (370)
T ss_dssp TTSCCE---------E-GG-GSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTT
T ss_pred cccCCc---------C-Hh-hccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCC
Confidence 000000 0 00 011122 234455544332 356899999999999988653221 112222223
Q ss_pred CceeeEEEccCCcEEEEECCCCeEEEEEeCC----------ceeeeeecCCceeEEEecC--------------------
Q 040361 285 SALSKLAASRHGRIVLYGDDDLSLHLFSING----------KHLASSESNGRLNCLELSA-------------------- 334 (413)
Q Consensus 285 ~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~----------~~~~~~~~~~~i~~~~~s~-------------------- 334 (413)
..+..+........++..+.+|.+..|+... -..........|.++...+
T Consensus 150 d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t 229 (370)
T 3l6v_A 150 DALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAKGEEVVSLIVSERAGGVEDEVEDESAEEVVET 229 (370)
T ss_dssp CCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEECCC------------------
T ss_pred CEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeCCCCEEEEEEEeccccccccccccccccccccc
Confidence 3454444444555677777788887787641 1111123344555554443
Q ss_pred ---------------CCCEEEEeCCCCeEEEEECCCCce-------EEE--ecCCCCcEEEEE-EccCCeEEEEcCCCeE
Q 040361 335 ---------------CGQFLVCGGDQGQIVVRSMNSLEV-------VRR--YSGVGKIITSLA-VTPEECFLAGTKDGCL 389 (413)
Q Consensus 335 ---------------~~~~l~~~~~dg~i~v~d~~~~~~-------~~~--~~~~~~~v~~~~-~~~~~~~l~~~~dg~i 389 (413)
++..+++.+..|..+...+..... +.. +....+.+..+. ..++..++..+..|.+
T Consensus 230 ~~g~~~~~~~~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~g~lv~~~~v~~~d~i~liT~~G~~ 309 (370)
T 3l6v_A 230 TDGAEPAVIDVADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGSTDEVMLISDGGTL 309 (370)
T ss_dssp -----------------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEETTCCE
T ss_pred cccccccccccccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCCCCcEEEEEEeCCCceEEEEcCCCeE
Confidence 456888999999988887653211 222 222233455443 3444566666666766
Q ss_pred EEEEecC
Q 040361 390 LVYSIEN 396 (413)
Q Consensus 390 ~vw~~~~ 396 (413)
.-..+..
T Consensus 310 iR~~v~~ 316 (370)
T 3l6v_A 310 VRTRGSE 316 (370)
T ss_dssp EEEEGGG
T ss_pred EEeeHhh
Confidence 6555543
No 365
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=72.62 E-value=15 Score=34.32 Aligned_cols=59 Identities=15% Similarity=0.157 Sum_probs=40.7
Q ss_pred eEEEEEecCCCEEEEeeCC------------CcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEE
Q 040361 244 ITCLYVSVELDIVISGSKD------------GTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYG 302 (413)
Q Consensus 244 i~~~~~~~~~~~l~s~~~d------------g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 302 (413)
.--|+|++.|++++.-..+ ..+.+.+..+++..+-+..+.+..++.++|+||++.|++.
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 3568899999866654322 1345556667777666667777788888888888776554
No 366
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=72.31 E-value=56 Score=29.46 Aligned_cols=205 Identities=10% Similarity=0.041 Sum_probs=100.7
Q ss_pred CeEEEEEECCCCC-EEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeee----cCCCCeEEEEEec
Q 040361 177 DVVSCVAVTTDGS-ILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILC----GHDDIITCLYVSV 251 (413)
Q Consensus 177 ~~v~~~~~~~~~~-~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~h~~~i~~~~~~~ 251 (413)
...+.|+|.||+. .|+++...|.|++++...... ...+..+ +..... ........|+|+|
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~-~~~~~~~--------------~~~~~~g~~~~~e~Gllgia~~P 78 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIF-KEPYLDI--------------HKLVQSGIKGGDERGLLSLAFHP 78 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBC-SSCSEEC--------------TTTBCCCCSSSCCCSEEEEEECT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCee-eeeecCC--------------cceeccCccccCCCcceeeEeCC
Confidence 3457899999986 455556789999886432210 0000000 000001 1245678899998
Q ss_pred C----CCEEEEeeC--C----------CcEEEEEccC----------CeEEEEEe-CCCCCceeeEEEccCCcEEEEECC
Q 040361 252 E----LDIVISGSK--D----------GTCVFHTLRE----------GRYVRSLC-HPSGSALSKLAASRHGRIVLYGDD 304 (413)
Q Consensus 252 ~----~~~l~s~~~--d----------g~i~vwd~~~----------~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~ 304 (413)
+ +.+.++-+. + ..|.-|.+.. .+.+..+. ......-..|+|.|||.+.++.+.
T Consensus 79 ~f~~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 79 NYKKNGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp THHHHCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred CCcCCCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence 6 334443332 1 1344455532 23333333 111234678999999987777554
Q ss_pred C-----------------CeEEEEEeCCc----------------------eeeeeecCCceeEEEecCC-----CC-EE
Q 040361 305 D-----------------LSLHLFSINGK----------------------HLASSESNGRLNCLELSAC-----GQ-FL 339 (413)
Q Consensus 305 d-----------------~~i~i~d~~~~----------------------~~~~~~~~~~i~~~~~s~~-----~~-~l 339 (413)
. |.|.-.|.++. .+....+ .....++|.|. |+ ++
T Consensus 159 ~~~~~~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~-RNp~gla~dp~tg~~~G~l~~ 237 (463)
T 2wg3_C 159 GMITLDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGL-HDPGRCAVDRHPTDININLTI 237 (463)
T ss_dssp TTCCHHHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECC-SSCCBEEEESSCSSTTCSEEE
T ss_pred CCCCCCccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECC-CCcceEEECCCCCCcccceEE
Confidence 3 33444555542 1111222 23567899987 34 45
Q ss_pred EEeCCCC----eEEEEECCCC------ceEEEecCCC-CcEEEEEEccC-------CeEEEEcCCCeEEEEEecCC
Q 040361 340 VCGGDQG----QIVVRSMNSL------EVVRRYSGVG-KIITSLAVTPE-------ECFLAGTKDGCLLVYSIENR 397 (413)
Q Consensus 340 ~~~~~dg----~i~v~d~~~~------~~~~~~~~~~-~~v~~~~~~~~-------~~~l~~~~dg~i~vw~~~~~ 397 (413)
+.+...| .-.|..+..+ .++..+..|. ..+..+.|-.. +.++.+...+.|....++..
T Consensus 238 ~~~D~~G~~~~~~ei~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~~~~g~i~~~~~~~~ 313 (463)
T 2wg3_C 238 LCSDSNGKNRSSARILQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVFGDRNGNFLTLQQSPV 313 (463)
T ss_dssp EEECC------CEEEEEEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEEEETTSCEEEEEC---
T ss_pred EecccCCCCCCCCeEeeeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEEecCCCcEEEEEeCCC
Confidence 5443212 1233333322 2444454221 46788887432 44666655577665565543
No 367
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=72.07 E-value=16 Score=36.48 Aligned_cols=38 Identities=11% Similarity=0.039 Sum_probs=32.1
Q ss_pred CceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEe
Q 040361 325 GRLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRY 362 (413)
Q Consensus 325 ~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~ 362 (413)
..+.+++..++..++++-+.|+++|+|++.+++++.+.
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 35667777888889999999999999999999888764
No 368
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=72.00 E-value=49 Score=28.73 Aligned_cols=200 Identities=13% Similarity=0.022 Sum_probs=101.5
Q ss_pred CCCceeeecCCCCccccCCC-cCCC-ccc-CCCCcccceecceeEEEEecCCCCEEEEeecCCCeEEEEEc---C-----
Q 040361 96 SGGNFTFSGSQDPFFGVGAD-ILSP-RNV-GSPLAESFELGSQCFTTMQTPSENFLITCGNWENSFQVIAL---N----- 164 (413)
Q Consensus 96 ~~~~~l~~~~~d~~~~~~~~-~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~i~i~~~---~----- 164 (413)
|+..++++.+.+|.++--.. .+.. +.- .....-.+..+..+..+......+.+++..+ .|.++-+.. .
T Consensus 5 ~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~D~l~~~~~~~t~d~ll~fT~-~G~~~~~~~~eip~~~r~ 83 (370)
T 3l6v_A 5 APEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVNTHDTLLTFTS-SGKVFWLPVHQLPEAGSN 83 (370)
T ss_dssp CCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCCCCEEEEEEECTTCEEEEEET-TSEEEEEEGGGSCBCCTT
T ss_pred cCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCCCCEEEEEEEecCCCEEEEEeC-CCeEEEEEHHHCcCCCcc
Confidence 45566677777777654210 0000 000 0111122233455555555556665665454 777666553 2
Q ss_pred -CCcEEEE---eecCCCeEEEEE-EC--CCCCEEEEccCCCcEEEEEeccccccccccccceeecCCCceeeecCceeee
Q 040361 165 -DGRVVQS---IRQHRDVVSCVA-VT--TDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHIL 237 (413)
Q Consensus 165 -~~~~~~~---~~~h~~~v~~~~-~~--~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (413)
.|..+.. +. ....|.++. .. .++.+|+.++..|.++-..+..-....+ ... ....+
T Consensus 84 a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~--~G~--------------~ai~L 146 (370)
T 3l6v_A 84 ARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLA--RGK--------------IAINL 146 (370)
T ss_dssp SCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCT--TCE--------------ESSCC
T ss_pred cCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccC--Cce--------------EEEEe
Confidence 1222111 22 234455444 32 2456899999999999988765442110 000 11123
Q ss_pred ecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccCC-------eEEEEEeCCCCCceeeEEEcc----------------
Q 040361 238 CGHDDIITCLYVSVELDIVISGSKDGTCVFHTLREG-------RYVRSLCHPSGSALSKLAASR---------------- 294 (413)
Q Consensus 238 ~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-------~~~~~~~~~~~~~v~~~~~~~---------------- 294 (413)
.. .+.+..+........++..+.+|.+..++...- +=++-+....+..|.++...+
T Consensus 147 ~~-~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~ 225 (370)
T 3l6v_A 147 DE-GDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAKGEEVVSLIVSERAGGVEDEVEDESAEE 225 (370)
T ss_dssp CT-TCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEECCC--------------
T ss_pred CC-CCEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeCCCCEEEEEEEeccccccccccccccccc
Confidence 32 344444444455567777888888877775421 112222222233455544433
Q ss_pred -------------------CCcEEEEECCCCeEEEEEeC
Q 040361 295 -------------------HGRIVLYGDDDLSLHLFSIN 314 (413)
Q Consensus 295 -------------------~~~~l~~~~~d~~i~i~d~~ 314 (413)
++..+++.+..|..+...+.
T Consensus 226 ~~~t~~g~~~~~~~~~~~~~~~~il~vTe~G~gKrt~~~ 264 (370)
T 3l6v_A 226 VVETTDGAEPAVIDVADNGDVAYILTATENGYGKRTPLA 264 (370)
T ss_dssp ---------------------CEEEEEETTSEEEEEEGG
T ss_pred cccccccccccccccccccCCceEEEeeCCCCEEEEEHH
Confidence 34578888888888888774
No 369
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=71.35 E-value=27 Score=33.32 Aligned_cols=37 Identities=11% Similarity=0.130 Sum_probs=30.4
Q ss_pred CeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeC
Q 040361 243 IITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCH 281 (413)
Q Consensus 243 ~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 281 (413)
.|.++.+ +..++++-+.|+++|+||+++++++.+...
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4555444 467999999999999999999999888765
No 370
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=71.24 E-value=46 Score=28.02 Aligned_cols=238 Identities=12% Similarity=0.078 Sum_probs=119.3
Q ss_pred CCEEEEeecCCCeEEEEEcCCCcEE---------EEeecCCCeEEEEEECCCCCEEEEccCCCcEEEEEecccccccccc
Q 040361 145 ENFLITCGNWENSFQVIALNDGRVV---------QSIRQHRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRV 215 (413)
Q Consensus 145 ~~~l~~~g~~d~~i~i~~~~~~~~~---------~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~ 215 (413)
...++. -+.+|.|+--.+.+-+.. ..++.. +.+..+........|+..+..|.+.-.....-......-
T Consensus 3 e~~~v~-~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~-D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a 80 (307)
T 1zi0_A 3 EDVVVT-LSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEE-DFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGA 80 (307)
T ss_dssp CEEEEE-EETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSS
T ss_pred CcEEEE-EeCCCEEEEeeHHHhhhhccCCCCceeeeeCCC-CEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCC
Confidence 334444 445888877766432211 112222 333333333345566666777876655543321110000
Q ss_pred ccceeecCCCceeeecCceeeeecCCCCeEEEEEe---cCCCEEEEeeCCCcEEEEEccCCe-----EEEEEeCCCCCce
Q 040361 216 RNMQIEAPRKDYVIVETPFHILCGHDDIITCLYVS---VELDIVISGSKDGTCVFHTLREGR-----YVRSLCHPSGSAL 287 (413)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~---~~~~~l~s~~~dg~i~vwd~~~~~-----~~~~~~~~~~~~v 287 (413)
... .... ...+. ....|.++..- .+..+++..+.+|.++-..+.... -+..+....+..+
T Consensus 81 ~G~----------~i~~-~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~l 148 (307)
T 1zi0_A 81 RGR----------PIVN-LLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDEL 148 (307)
T ss_dssp CCE----------EGGG-TSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCE
T ss_pred CCe----------Ehhh-ccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCCCEE
Confidence 000 0000 01122 23345554332 345678899999999998774211 1122222223345
Q ss_pred eeEEEccCCcEEEEECCCCeEEEEEeCC----------ceeeeeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCCc
Q 040361 288 SKLAASRHGRIVLYGDDDLSLHLFSING----------KHLASSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSLE 357 (413)
Q Consensus 288 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~----------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~ 357 (413)
..+....+...++..+.+|.+..++... ...........|..+....++..+++.+..|.++-.++....
T Consensus 149 v~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~ 228 (307)
T 1zi0_A 149 IGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYP 228 (307)
T ss_dssp EEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSC
T ss_pred EEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhc
Confidence 4544444455677777788888887641 111122344567777655566778888899998888763211
Q ss_pred ---------eEEEecCCCCcEEEEEE-ccCCeEEEEcCCCeEEEEEecC
Q 040361 358 ---------VVRRYSGVGKIITSLAV-TPEECFLAGTKDGCLLVYSIEN 396 (413)
Q Consensus 358 ---------~~~~~~~~~~~v~~~~~-~~~~~~l~~~~dg~i~vw~~~~ 396 (413)
....+..-.+.+..+.. .++..++..+.+|.+.-+++..
T Consensus 229 ~~~Rg~kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 229 TKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp CCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred cCCCCCCCEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 11122222345555444 3445566777777777677665
No 371
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=69.39 E-value=45 Score=27.18 Aligned_cols=112 Identities=13% Similarity=0.135 Sum_probs=64.0
Q ss_pred eEEEEEecCCCEEEEeeCCCcEEEEEcc---C----CeEEE-EEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCC
Q 040361 244 ITCLYVSVELDIVISGSKDGTCVFHTLR---E----GRYVR-SLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSING 315 (413)
Q Consensus 244 i~~~~~~~~~~~l~s~~~dg~i~vwd~~---~----~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 315 (413)
+..+........++..+..|.++-.... . |..+. .+....+..|..+....++.+++..+..|.++...+..
T Consensus 35 l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e 114 (256)
T 1zvt_A 35 FKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFND 114 (256)
T ss_dssp EEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGG
T ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHH
Confidence 3333333344456666778876655432 1 22211 11222344566664434566788889999999988742
Q ss_pred --------ceeeeeecCCceeEEEec-CCCCEEEEeCCCCeEEEEECCC
Q 040361 316 --------KHLASSESNGRLNCLELS-ACGQFLVCGGDQGQIVVRSMNS 355 (413)
Q Consensus 316 --------~~~~~~~~~~~i~~~~~s-~~~~~l~~~~~dg~i~v~d~~~ 355 (413)
...........+..+... .++..++..+.+|.+..++...
T Consensus 115 ~~~~~r~G~~~i~L~~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~~~e 163 (256)
T 1zvt_A 115 LVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSD 163 (256)
T ss_dssp GCCCSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEEGGG
T ss_pred hcccCcCceEEEEECCCCEEEEEEEecCCCCEEEEEcCCCeEEEEEHHH
Confidence 111122333455555554 3456788888899988888754
No 372
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=68.75 E-value=14 Score=37.90 Aligned_cols=39 Identities=13% Similarity=0.092 Sum_probs=33.0
Q ss_pred CeEEEEEecCCCEEEEeeCCCcEEEEEccCCeEEEEEeC
Q 040361 243 IITCLYVSVELDIVISGSKDGTCVFHTLREGRYVRSLCH 281 (413)
Q Consensus 243 ~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 281 (413)
.+.+++..++..++++-+.|+++++|++.+++++.+...
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL 277 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 277 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeech
Confidence 445666777888999999999999999999999988653
No 373
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=66.69 E-value=34 Score=31.69 Aligned_cols=60 Identities=13% Similarity=0.130 Sum_probs=38.5
Q ss_pred CeEEEEEecCCCEEEEeeC------------CCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEE
Q 040361 243 IITCLYVSVELDIVISGSK------------DGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYG 302 (413)
Q Consensus 243 ~i~~~~~~~~~~~l~s~~~------------dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 302 (413)
....|.|.++|.+.+.-.. ...+..++..+++..+.+..+....++.++|+||++.|++.
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 4567889998887763321 11455566666666555555545567888888888777654
No 374
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=65.39 E-value=69 Score=27.89 Aligned_cols=226 Identities=14% Similarity=0.118 Sum_probs=112.3
Q ss_pred CCeEEEEEcCCC--------c---EEEEeec-CCCeEEEEEECCCCCEEEEccCCCcEEEEEeccccccccccccceeec
Q 040361 155 ENSFQVIALNDG--------R---VVQSIRQ-HRDVVSCVAVTTDGSILATGSYDTTVMVWEVIRARAPEKRVRNMQIEA 222 (413)
Q Consensus 155 d~~i~i~~~~~~--------~---~~~~~~~-h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~ 222 (413)
||.|+.|-.+.. . ....+.. ....+..++.+.-....+.-..||.|..|-.......-..
T Consensus 71 ~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g-------- 142 (389)
T 3kci_A 71 DGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHG-------- 142 (389)
T ss_dssp TSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSS--------
T ss_pred CCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCC--------
Confidence 888888864321 1 1122222 2234555666665666666778999999975442211000
Q ss_pred CCCceeeecCceeeeecCCCCeEEEEEecCCCEEEEeeCCCcEEEEEccC-C---------e-EEEEEeCCCCCceeeEE
Q 040361 223 PRKDYVIVETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCVFHTLRE-G---------R-YVRSLCHPSGSALSKLA 291 (413)
Q Consensus 223 ~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~-~---------~-~~~~~~~~~~~~v~~~~ 291 (413)
..... ..+...-.-....|..++... ...+....||.|+.|-... + . ....+.......+..++
T Consensus 143 -~~~~~--~~p~~v~~l~~~~i~~va~G~--~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia 217 (389)
T 3kci_A 143 -NRSPC--DRPRVIESLRGIEVVDVAAGG--AHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIA 217 (389)
T ss_dssp -SCCCE--EEEEECGGGTTSCEEEEEECS--SEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEE
T ss_pred -CCccC--cCCeEecccCCCeEEEEEeCc--CeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEE
Confidence 00000 001111111123566665533 3455566789999996432 1 0 11122222233455666
Q ss_pred EccCCcEEEEECCCCeEEEEEeCC--c---------ee-eeee--cCCceeEEEecCCCCEEEEeCCCCeEEEEECCCC-
Q 040361 292 ASRHGRIVLYGDDDLSLHLFSING--K---------HL-ASSE--SNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSL- 356 (413)
Q Consensus 292 ~~~~~~~l~~~~~d~~i~i~d~~~--~---------~~-~~~~--~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~- 356 (413)
........++-..++.|+.|-.+. + .. .... ....+..++. -..+.++-..+|.|+.|=....
T Consensus 218 ~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~--G~~hs~alt~~G~v~~wG~n~~G 295 (389)
T 3kci_A 218 CGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVEC--GSQFSVALTKSGAVYTWGKGDYH 295 (389)
T ss_dssp ECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEE--ETTEEEEEETTSCEEEEECCGGG
T ss_pred EcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeC--CCCEEEEEeCCCeEEEEeCCCCC
Confidence 544335566667788999996541 1 00 0111 1123444444 2334444467888999865321
Q ss_pred c-------e---EEEecC-CCCcEEEEEEccCCeEEEEcCCCeEEEEEecC
Q 040361 357 E-------V---VRRYSG-VGKIITSLAVTPEECFLAGTKDGCLLVYSIEN 396 (413)
Q Consensus 357 ~-------~---~~~~~~-~~~~v~~~~~~~~~~~l~~~~dg~i~vw~~~~ 396 (413)
+ . -..+.. ....|..++.... ..++...||.|+.|-...
T Consensus 296 qLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~~-h~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 296 RLGHGSDDHVRRPRQVQGLQGKKVIAIATGSL-HCVCCTEDGEVYTWGDND 345 (389)
T ss_dssp TTCSSSCCCEEEEEECGGGTTCCEEEEEECSS-EEEEEETTCCEEEEECCT
T ss_pred CCCCCCCccccCCeEeccCCCCCEEEEEeccC-eEEEECCCCCEEEeeCCC
Confidence 0 0 111221 2245777766533 455667889999997653
No 375
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=62.32 E-value=43 Score=31.08 Aligned_cols=60 Identities=12% Similarity=0.022 Sum_probs=43.1
Q ss_pred eeEEEEecCCCCEEEEeecC-----------CCeEEEEEcCCCcEEEEeecC-CCeEEEEEECCCCCEEEEc
Q 040361 135 QCFTTMQTPSENFLITCGNW-----------ENSFQVIALNDGRVVQSIRQH-RDVVSCVAVTTDGSILATG 194 (413)
Q Consensus 135 ~~~~~~~~~~~~~l~~~g~~-----------d~~i~i~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~ 194 (413)
..-.+.+.++|..++.+-.. .+.+..++..++++...+.+. ..+++.++|+||++.|+++
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 34567788888887754211 126777777788877777653 4689999999999988876
No 376
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=58.96 E-value=83 Score=26.66 Aligned_cols=144 Identities=6% Similarity=0.033 Sum_probs=83.5
Q ss_pred CCEEEEeeCCCcEEEEEccCC------eEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeCC-----c-----
Q 040361 253 LDIVISGSKDGTCVFHTLREG------RYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSING-----K----- 316 (413)
Q Consensus 253 ~~~l~s~~~dg~i~vwd~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~-----~----- 316 (413)
+.+++.++.+|.++-..+... .-+..+....+..+..+........++..+.+|.+..++... +
T Consensus 106 ~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV 185 (323)
T 1wp5_A 106 NGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGV 185 (323)
T ss_dssp SCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCE
T ss_pred CceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCE
Confidence 567899999999999887422 122222222234555554444556677788888888887642 1
Q ss_pred eeeeeecCCceeEEEecCCCC-EEEEeCCCCeEEEEECCCC-------ceEEEe---cCCCCcEEE-EEEccCCeEEEEc
Q 040361 317 HLASSESNGRLNCLELSACGQ-FLVCGGDQGQIVVRSMNSL-------EVVRRY---SGVGKIITS-LAVTPEECFLAGT 384 (413)
Q Consensus 317 ~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~v~d~~~~-------~~~~~~---~~~~~~v~~-~~~~~~~~~l~~~ 384 (413)
..........|.++...+++. .+++.+..|..+..++... +-+..+ +.....+.. ..+.++..++..+
T Consensus 186 ~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~~~~~~~~~~l~~~~~v~~~~~i~~it 265 (323)
T 1wp5_A 186 KGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILRELKANPHRISGFVVAQDSDTIYLQT 265 (323)
T ss_dssp ECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSCCCSSSCCCEEEEEEECTTCEEEEEE
T ss_pred EEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECeeecCCCCceEEEEEEeCCCCeEEEEe
Confidence 111123345566665444455 7888888888887776431 112222 222224543 3445455666777
Q ss_pred CCCeEEEEEecC
Q 040361 385 KDGCLLVYSIEN 396 (413)
Q Consensus 385 ~dg~i~vw~~~~ 396 (413)
..|.+.-..+..
T Consensus 266 ~~g~~ir~~~~~ 277 (323)
T 1wp5_A 266 EKSFIETIKVGD 277 (323)
T ss_dssp TTSCEEEEEGGG
T ss_pred CCCeEEEEEhhh
Confidence 777776667655
No 377
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=58.96 E-value=48 Score=30.98 Aligned_cols=59 Identities=12% Similarity=0.021 Sum_probs=42.2
Q ss_pred eEEEEecCCCCEEEEeecC-----------CCeEEEEEcCCCcEEEEeecC-CCeEEEEEECCCCCEEEEc
Q 040361 136 CFTTMQTPSENFLITCGNW-----------ENSFQVIALNDGRVVQSIRQH-RDVVSCVAVTTDGSILATG 194 (413)
Q Consensus 136 ~~~~~~~~~~~~l~~~g~~-----------d~~i~i~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~ 194 (413)
.=.+.+++.|+.++..-.. .+.+.+.+..+++..+.+.+. ..+++.++|+||++.|+..
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 3457788998866654221 124566677788888777764 4789999999999888765
No 378
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=58.57 E-value=91 Score=27.03 Aligned_cols=144 Identities=10% Similarity=0.085 Sum_probs=71.4
Q ss_pred CCCeEEEEEec--CCCEEEEeeCCC----cEEEEEccCCeEEEEEeC----C---------CCCceeeEEEcc-C-CcEE
Q 040361 241 DDIITCLYVSV--ELDIVISGSKDG----TCVFHTLREGRYVRSLCH----P---------SGSALSKLAASR-H-GRIV 299 (413)
Q Consensus 241 ~~~i~~~~~~~--~~~~l~s~~~dg----~i~vwd~~~~~~~~~~~~----~---------~~~~v~~~~~~~-~-~~~l 299 (413)
...|.+|++.| ++.++ .++..| .|...+ ..++.-..+.. + ....|.++++.| + ...+
T Consensus 54 ~~~v~~i~~dp~~~~~l~-~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l 131 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERML-MAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTW 131 (394)
T ss_dssp TSEEEEEEECSSSTTCEE-EEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCE
T ss_pred CCceEEEEECCCCCCeEE-EEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEE
Confidence 35689999998 44444 444444 343332 22322222211 1 012466788886 2 4556
Q ss_pred EEECCCCeEEEEEeCCceeeeee--------------------cCCceeEEEecCC-CCEEEEeCCCCeEEEEECCCCce
Q 040361 300 LYGDDDLSLHLFSINGKHLASSE--------------------SNGRLNCLELSAC-GQFLVCGGDQGQIVVRSMNSLEV 358 (413)
Q Consensus 300 ~~~~~d~~i~i~d~~~~~~~~~~--------------------~~~~i~~~~~s~~-~~~l~~~~~dg~i~v~d~~~~~~ 358 (413)
.++...+.|...+-.++.-.... ....+.++.++|. ...|+++..++.|...+ ..++.
T Consensus 132 ~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~t 210 (394)
T 3b7f_A 132 YAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGTD 210 (394)
T ss_dssp EEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEES-STTSS
T ss_pred EEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEEC-CCCCC
Confidence 66555566655544343322211 1235778999874 34445554444444432 22222
Q ss_pred EEEecC-C------------CCcEEEEEEccC--CeEEEEcCCC
Q 040361 359 VRRYSG-V------------GKIITSLAVTPE--ECFLAGTKDG 387 (413)
Q Consensus 359 ~~~~~~-~------------~~~v~~~~~~~~--~~~l~~~~dg 387 (413)
...+.. . ...+.++.++|+ +.++++...+
T Consensus 211 W~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g 254 (394)
T 3b7f_A 211 WKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG 254 (394)
T ss_dssp CEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE
T ss_pred ceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe
Confidence 222211 0 124889999986 6666665544
No 379
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=58.00 E-value=1.3e+02 Score=28.79 Aligned_cols=197 Identities=10% Similarity=0.061 Sum_probs=98.8
Q ss_pred EEEE-ECCCCCEEEEc-----cCCCcEEEEEeccccccccccccceeecCCCceeeecCceeeeecCC-----CCeEEEE
Q 040361 180 SCVA-VTTDGSILATG-----SYDTTVMVWEVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHD-----DIITCLY 248 (413)
Q Consensus 180 ~~~~-~~~~~~~l~s~-----s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-----~~i~~~~ 248 (413)
..+. ++|++++++.+ +.-..++++|+.+++.....+ . -.... .....++
T Consensus 132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~-------------------~-~~~k~~~~~~~~~~~~~ 191 (711)
T 4hvt_A 132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGF-------------------E-PITNSGKLLEGKFTYPT 191 (711)
T ss_dssp EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCS-------------------C-CBCTTCCBCCEETCCEE
T ss_pred eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCc-------------------c-cccccccccccccceee
Confidence 3444 78888876643 233469999998887322111 0 00000 0113346
Q ss_pred EecCCCEEEEe----------eCCCcEEEEEccCCe--EEEEEeCCCCCceeeEEEccCCc-----EEEEEC---CCCeE
Q 040361 249 VSVELDIVISG----------SKDGTCVFHTLREGR--YVRSLCHPSGSALSKLAASRHGR-----IVLYGD---DDLSL 308 (413)
Q Consensus 249 ~~~~~~~l~s~----------~~dg~i~vwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~-----~l~~~~---~d~~i 308 (413)
|..+...+++. +....|+.|.+.+.. -...+.......-.....+++++ .+++.+ ....+
T Consensus 192 W~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 271 (711)
T 4hvt_A 192 WINKDTIIFNLVLHKNEITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDN 271 (711)
T ss_dssp EEETTEEEECCCCSTTCBCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEE
T ss_pred EECCCEEEEEeCCCCCCcCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeE
Confidence 65333333321 123468888876542 22233333222223344556655 234332 22456
Q ss_pred EEEEeCC--ceeeeeecCCceeEEEecCCCCEEEEeC----------CCCeEEEEECCCCc-------eEEE-ec-CCCC
Q 040361 309 HLFSING--KHLASSESNGRLNCLELSACGQFLVCGG----------DQGQIVVRSMNSLE-------VVRR-YS-GVGK 367 (413)
Q Consensus 309 ~i~d~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~----------~dg~i~v~d~~~~~-------~~~~-~~-~~~~ 367 (413)
++.+... ..+......... .+..+.++.+++... ..+.|.+.|+.++. .... +. ....
T Consensus 272 ~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (711)
T 4hvt_A 272 YILDTKYKNLKLQKINMPSDA-TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANE 350 (711)
T ss_dssp EEEECSSSSCEEEECCSCTTC-EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTE
T ss_pred EEEcCCCCCCcceEeecCCcc-eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCC
Confidence 6667651 222222211111 123344565555331 46778999987642 2222 32 2345
Q ss_pred cEEEEEEccCCeEEEEcCCCe--EEEEEecCC
Q 040361 368 IITSLAVTPEECFLAGTKDGC--LLVYSIENR 397 (413)
Q Consensus 368 ~v~~~~~~~~~~~l~~~~dg~--i~vw~~~~~ 397 (413)
.+..+.|..+..+++...++. |.++++.++
T Consensus 351 ~l~~~~~~~~~l~~~~~~~~~~~l~~~~~~~g 382 (711)
T 4hvt_A 351 VFNFISTTKDRVFLATYDNVVAKVVTFTLENE 382 (711)
T ss_dssp EEEEEEECSSCEEEEEEETTEEEEEEECEETT
T ss_pred eEEEEEEECCEEEEEEEECCEEEEEEEECCCC
Confidence 688899998766666666654 677777665
No 380
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=56.16 E-value=1e+02 Score=26.81 Aligned_cols=150 Identities=14% Similarity=0.088 Sum_probs=79.6
Q ss_pred CeEEEEEecCCCEEEEeeCCCcEEEEEccCC-----------eEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEE
Q 040361 243 IITCLYVSVELDIVISGSKDGTCVFHTLREG-----------RYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLF 311 (413)
Q Consensus 243 ~i~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~ 311 (413)
.+..++++......+.-..||.|+.|-.... .....+....+..|..++. .....++-..+|.|+.|
T Consensus 106 ~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~--G~~hs~alt~~G~v~~w 183 (389)
T 3kci_A 106 FIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAA--GGAHSACVTAAGDLYTW 183 (389)
T ss_dssp CEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEE--CSSEEEEEETTSCEEEE
T ss_pred ceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEe--CcCeEEEEeCCCeEEEe
Confidence 3444556555566666778999999954320 1111222112223444444 34455556678889999
Q ss_pred EeCC--c--------eee--ee--ecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCC-c---------eE-EEecC-C
Q 040361 312 SING--K--------HLA--SS--ESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSL-E---------VV-RRYSG-V 365 (413)
Q Consensus 312 d~~~--~--------~~~--~~--~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~-~---------~~-~~~~~-~ 365 (413)
-.+. + ... .. .....+..++......+.++-..+|.|+.|-.... + .. ..+.. .
T Consensus 184 G~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~ 263 (389)
T 3kci_A 184 GKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLT 263 (389)
T ss_dssp ECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGT
T ss_pred CCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccC
Confidence 6531 1 000 11 12234566665443356666678899999965421 1 11 11221 1
Q ss_pred CCcEEEEEEccCCeEEEEcCCCeEEEEEec
Q 040361 366 GKIITSLAVTPEECFLAGTKDGCLLVYSIE 395 (413)
Q Consensus 366 ~~~v~~~~~~~~~~~l~~~~dg~i~vw~~~ 395 (413)
...|..++...+ ..++-..||.|+.|-..
T Consensus 264 ~~~v~~v~~G~~-hs~alt~~G~v~~wG~n 292 (389)
T 3kci_A 264 GLGVVKVECGSQ-FSVALTKSGAVYTWGKG 292 (389)
T ss_dssp TSCEEEEEEETT-EEEEEETTSCEEEEECC
T ss_pred CCcEEEEeCCCC-EEEEEeCCCeEEEEeCC
Confidence 234667666533 44555688999999764
No 381
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=50.41 E-value=15 Score=37.69 Aligned_cols=37 Identities=11% Similarity=0.037 Sum_probs=26.3
Q ss_pred ceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEe
Q 040361 326 RLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRY 362 (413)
Q Consensus 326 ~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~ 362 (413)
.+.+++..++..++++-+.|+++|+|++.+++++.+.
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 3444555667778888888888888888887776553
No 382
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=46.80 E-value=68 Score=22.04 Aligned_cols=60 Identities=15% Similarity=0.121 Sum_probs=27.3
Q ss_pred CCEEEEeeCCCcEEEEEccCCeEEEEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEEeC
Q 040361 253 LDIVISGSKDGTCVFHTLREGRYVRSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFSIN 314 (413)
Q Consensus 253 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~ 314 (413)
+.+.+.-..||.+.+|+...+..+..-.......-..+.+..+|++++... ++.+ +|...
T Consensus 24 g~~~L~~q~dGNLvL~~~~~~~~vWssnt~~~~~~~~l~l~~dGNLVl~d~-~~~~-iW~S~ 83 (113)
T 3mez_B 24 RDYSLVMRDDCNLVLTKGSKTNIVWESGTSGRGQHCFMRLGHSGELDITDD-RLNT-VFVSN 83 (113)
T ss_dssp TTEEEEECTTSCEEEEETTTTEEEEECCCTTSCSSCEEEECTTSCEEEECT-TSCE-EEECS
T ss_pred CCEEEEEcCCCEEEEEECCCCEEEEECCcccCCcCEEEEEeCCCcEEEECC-CCCE-EEECC
Confidence 344444455666666654333444433221111123456666666665533 2332 55543
No 383
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=46.50 E-value=31 Score=32.93 Aligned_cols=36 Identities=11% Similarity=0.391 Sum_probs=28.2
Q ss_pred ceeEEEecCCCCEEEEeCCCCeEEEEECCCCceEEEec
Q 040361 326 RLNCLELSACGQFLVCGGDQGQIVVRSMNSLEVVRRYS 363 (413)
Q Consensus 326 ~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~ 363 (413)
.|.++.+ +..++++-+.|.++|+|++.+++++....
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~D 258 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYD 258 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeec
Confidence 4555554 47799999999999999999998776654
No 384
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=41.60 E-value=2e+02 Score=25.88 Aligned_cols=52 Identities=10% Similarity=0.096 Sum_probs=32.5
Q ss_pred eeEEEEecCCCC-EEEEeecCCCeEEEEEcCCC---cEEEEeec---------CCCeEEEEEECCC
Q 040361 135 QCFTTMQTPSEN-FLITCGNWENSFQVIALNDG---RVVQSIRQ---------HRDVVSCVAVTTD 187 (413)
Q Consensus 135 ~~~~~~~~~~~~-~l~~~g~~d~~i~i~~~~~~---~~~~~~~~---------h~~~v~~~~~~~~ 187 (413)
....+++.|++. .++++ ...|.|++++.... ..+..+.. .......|+|+|+
T Consensus 15 ~P~~~a~~pdG~~rl~V~-er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFIL-EKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SEEEEECCSSSSCCEEEE-ETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CceEEEECCCCCeEEEEE-eCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 456788899986 45543 44899999975322 12222211 1456789999996
No 385
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=41.41 E-value=1.8e+02 Score=25.35 Aligned_cols=142 Identities=6% Similarity=0.005 Sum_probs=77.2
Q ss_pred CEEEEeecCCCeEEEEEcCCCcEEEEeec--------------C----CCeEEEEEECCC----CCEEEEccCCCcEEEE
Q 040361 146 NFLITCGNWENSFQVIALNDGRVVQSIRQ--------------H----RDVVSCVAVTTD----GSILATGSYDTTVMVW 203 (413)
Q Consensus 146 ~~l~~~g~~d~~i~i~~~~~~~~~~~~~~--------------h----~~~v~~~~~~~~----~~~l~s~s~dg~i~iw 203 (413)
.+..++-...+.|.|+|+.+++.-+.+.. . ...|..++++|+ ++.|+-..-.+ -++|
T Consensus 171 ~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly 249 (381)
T 3q6k_A 171 TFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVY 249 (381)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEE
T ss_pred cEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEE
Confidence 34444444567899999998876655421 0 246788888887 67776665543 3556
Q ss_pred EeccccccccccccceeecCCCceeeecCceeeeecCC--CCeEEEEEe-cCCCEEEEeeCCCcEEEEEccC-C---eEE
Q 040361 204 EVIRARAPEKRVRNMQIEAPRKDYVIVETPFHILCGHD--DIITCLYVS-VELDIVISGSKDGTCVFHTLRE-G---RYV 276 (413)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~i~~~~~~-~~~~~l~s~~~dg~i~vwd~~~-~---~~~ 276 (413)
.+.+........ ...+..+..-. ..-..++.. .+|.++++--....|..|+..+ . +..
T Consensus 250 ~V~T~~L~~~~~---------------~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~ 314 (381)
T 3q6k_A 250 SVNTKELKQKGG---------------KLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNT 314 (381)
T ss_dssp EEEHHHHSSTTC---------------CCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGE
T ss_pred EEEHHHhhCcch---------------hhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCce
Confidence 665432110000 01222222211 233455665 5677777878888999999865 1 112
Q ss_pred EEE-eCCCCCceeeEEEccCCcEEEEEC
Q 040361 277 RSL-CHPSGSALSKLAASRHGRIVLYGD 303 (413)
Q Consensus 277 ~~~-~~~~~~~v~~~~~~~~~~~l~~~~ 303 (413)
..+ ..+.-..+..+.+..++.+.+..+
T Consensus 315 ~~l~~d~~l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 315 DVVYTSSRFVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp EEEEECTTCCSEEEEEECTTSCEEEEEC
T ss_pred EEEEECCCccccCeEEECCCCeEEEEEC
Confidence 222 222223456666666665444443
No 386
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=40.09 E-value=1.9e+02 Score=26.68 Aligned_cols=67 Identities=16% Similarity=0.060 Sum_probs=39.0
Q ss_pred CCeEEEEEecCCC--EEEEeeCCCcEEEEEccCC----eEEEEEeCC-CCCcee-eEEEccCCcEEEEECCCCeE
Q 040361 242 DIITCLYVSVELD--IVISGSKDGTCVFHTLREG----RYVRSLCHP-SGSALS-KLAASRHGRIVLYGDDDLSL 308 (413)
Q Consensus 242 ~~i~~~~~~~~~~--~l~s~~~dg~i~vwd~~~~----~~~~~~~~~-~~~~v~-~~~~~~~~~~l~~~~~d~~i 308 (413)
..+++++....+. .+..|+.+|.|.-..+... ..+..+... .+.+|. .+.++++...|++++.++.+
T Consensus 400 ~~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~ 474 (539)
T 3al9_A 400 DRLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVT 474 (539)
T ss_dssp SCEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEE
T ss_pred cceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEeccccc
Confidence 3566676655333 5667888887765444322 123333322 244664 78888888888877766433
No 387
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=31.12 E-value=3e+02 Score=24.95 Aligned_cols=67 Identities=12% Similarity=0.107 Sum_probs=35.7
Q ss_pred CeEEEEEecC----CC--EEEEeeCCCcEEEEEcc-CCe-------EEEEEeC-CCCCceeeEEEccCCcEEEEECCCCe
Q 040361 243 IITCLYVSVE----LD--IVISGSKDGTCVFHTLR-EGR-------YVRSLCH-PSGSALSKLAASRHGRIVLYGDDDLS 307 (413)
Q Consensus 243 ~i~~~~~~~~----~~--~l~s~~~dg~i~vwd~~-~~~-------~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~ 307 (413)
..++|+...- ++ .+..|+.+|.|.-.-+. .+. .+..+.. +.+.+|..+.++++...|++++.++.
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V 484 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGV 484 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCE
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeE
Confidence 4677766532 32 46678888876433221 111 1222222 12356677777777777777776654
Q ss_pred EE
Q 040361 308 LH 309 (413)
Q Consensus 308 i~ 309 (413)
++
T Consensus 485 ~~ 486 (495)
T 1q47_A 485 AQ 486 (495)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 388
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=30.97 E-value=3.6e+02 Score=25.78 Aligned_cols=142 Identities=16% Similarity=0.219 Sum_probs=73.7
Q ss_pred cCCCEEEEeeCCCcEEEEEccCCeEE--EEEeCCCCCceeeEEEccCCcEEEEECCCCeEEEEE---eC-----Cceee-
Q 040361 251 VELDIVISGSKDGTCVFHTLREGRYV--RSLCHPSGSALSKLAASRHGRIVLYGDDDLSLHLFS---IN-----GKHLA- 319 (413)
Q Consensus 251 ~~~~~l~s~~~dg~i~vwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d---~~-----~~~~~- 319 (413)
++....++-+.+|.|+-- .+.-. ..+....+..+..+........++.-+..|.++... +. |..+.
T Consensus 470 ~~e~v~v~ls~~GyiKr~---~g~~~~~~~~~~k~~D~~~~~~~~~t~d~ll~ft~~Gr~y~~~~~~lP~~~~~G~~i~~ 546 (716)
T 1zvu_A 470 PSEPVTIVLSQMGWVRSA---KGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTG 546 (716)
T ss_dssp CCCCCCEEEETTTEEEEC---CC---------------CCEEECCCSSSCEEEEETTSEEEEECTTTSCCCC---CBSTT
T ss_pred CCceEEEEEecCCeEecc---CCCCcCccccccCCCCeEEEEEEecCCCEEEEEecCCcEEEEEeeecccccccCeeHHh
Confidence 456677888899988752 11111 111111122343333333334444445556544333 22 11111
Q ss_pred --eeecCCceeEEEecCCCCEEEEeCCCCeEEEEECCCC-------ceEEEecCCCCcEEEEEEc--cCCeEEEEcCCCe
Q 040361 320 --SSESNGRLNCLELSACGQFLVCGGDQGQIVVRSMNSL-------EVVRRYSGVGKIITSLAVT--PEECFLAGTKDGC 388 (413)
Q Consensus 320 --~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~-------~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~dg~ 388 (413)
.......|..+....++.+++.++..|.++.-.+... .....+.. .+.+..+... .+..++..+.+|.
T Consensus 547 ll~l~~~e~i~~~~~~~~~~~l~~~T~~G~vk~~~l~~~~~~~~~g~~ai~L~~-~d~lv~~~~~~~~~~~v~l~t~~g~ 625 (716)
T 1zvu_A 547 KLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPE-NAHVMPPVVIEDASDMLLAITQAGR 625 (716)
T ss_dssp TSCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCT-TCCBCCCEECCCTTCEEEEEETTSE
T ss_pred ccCCCCCCeEEEEEEecCCceEEEEeCCceEEEecHHHhcccCccceEEEeeCC-CCEEEEEEEecCCCCEEEEEeCCCe
Confidence 1123445666655556788999999999998876532 22233332 3444444444 3456777888999
Q ss_pred EEEEEecC
Q 040361 389 LLVYSIEN 396 (413)
Q Consensus 389 i~vw~~~~ 396 (413)
...|+...
T Consensus 626 ~lrf~~~~ 633 (716)
T 1zvu_A 626 MLMFPVSD 633 (716)
T ss_dssp EEEEESTT
T ss_pred EEEEEHHH
Confidence 88888865
No 389
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=30.12 E-value=1.3e+02 Score=20.51 Aligned_cols=18 Identities=28% Similarity=0.159 Sum_probs=9.7
Q ss_pred CCcEEEEECCCCeEEEEE
Q 040361 295 HGRIVLYGDDDLSLHLFS 312 (413)
Q Consensus 295 ~~~~l~~~~~d~~i~i~d 312 (413)
++.+.+.-..||.+.+|+
T Consensus 23 ~g~~~L~~q~dGNLvL~~ 40 (113)
T 3mez_B 23 TRDYSLVMRDDCNLVLTK 40 (113)
T ss_dssp ETTEEEEECTTSCEEEEE
T ss_pred cCCEEEEEcCCCEEEEEE
Confidence 455555555555555554
No 390
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=28.39 E-value=3.6e+02 Score=25.00 Aligned_cols=152 Identities=12% Similarity=0.014 Sum_probs=85.7
Q ss_pred cCCCCeEEEEEecCC--CEEEEeeCCC----cEEEEEccCCeEEEEEeCCC-CCceeeEEEccC--CcEEEEECCCCeEE
Q 040361 239 GHDDIITCLYVSVEL--DIVISGSKDG----TCVFHTLREGRYVRSLCHPS-GSALSKLAASRH--GRIVLYGDDDLSLH 309 (413)
Q Consensus 239 ~h~~~i~~~~~~~~~--~~l~s~~~dg----~i~vwd~~~~~~~~~~~~~~-~~~v~~~~~~~~--~~~l~~~~~d~~i~ 309 (413)
+|...+....|.|+. ..++.+.+++ -..+.|..+|+.+....... ........+.|+ |..+.+ +. .
T Consensus 361 gHGDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~tG~vlw~~~~~~d~Gr~~~~Didp~~pG~E~w~---~~--~ 435 (591)
T 2zux_A 361 GHGDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAATGKILWGVYAGKDVGRGMAADIDPRYPGQEVWA---NG--S 435 (591)
T ss_dssp CCCSCEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEEEEECCSSCCCCEEEECCCTTSSSCEEEE---TT--E
T ss_pred CCCCeeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCCCcEEEEcCCCCCCCceeEEecCCCCCceEEEe---cC--c
Confidence 788888888888863 4566666552 35568999999998875421 122223334454 223333 22 4
Q ss_pred EEEeCCceeeeeecCCceeEEEecCCC-CEEEEeCCCCeEEEEECCCCc--eEEEecC-------CCCcEEEEEEccCC-
Q 040361 310 LFSINGKHLASSESNGRLNCLELSACG-QFLVCGGDQGQIVVRSMNSLE--VVRRYSG-------VGKIITSLAVTPEE- 378 (413)
Q Consensus 310 i~d~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~v~d~~~~~--~~~~~~~-------~~~~v~~~~~~~~~- 378 (413)
+|+.+++.+........-..+-|.-|. +.++-+ +.|.-|+...++ .+.++.+ ...+.....+.-|.
T Consensus 436 l~~~~G~~i~~~~p~~~N~~i~WdGDl~relld~---~~i~k~~~~~~~~~~l~~~~g~~snngtk~~P~l~aDi~GDwR 512 (591)
T 2zux_A 436 LYSAKGVKIGSGVPSSTNFGIWWDGDLLREQLDS---NRIDKWDYQNGVSKNMLTASGAAANNGTKATPTLQADLLGDWR 512 (591)
T ss_dssp EECTTSCBCSSCCCSCCSEEECCSSSSSCEEEET---TEEEEEETTTTEEEEEEECTTEECBSGGGCBCSEEECCSSSSS
T ss_pred eECCCCCEecCCCCCCcceeEEECCCCcHhhhCC---ceEEecccCCCceeEEEeecccccCCCCCCCEeeEEeccccCe
Confidence 788887666543111122345666554 344443 368888877765 3334432 12233444455553
Q ss_pred -eEEE-EcCCCeEEEEEecCCc
Q 040361 379 -CFLA-GTKDGCLLVYSIENRR 398 (413)
Q Consensus 379 -~~l~-~~~dg~i~vw~~~~~~ 398 (413)
.++. ...+..|+||......
T Consensus 513 EEvI~~t~D~~~LrIYtt~~pt 534 (591)
T 2zux_A 513 EEVVWRTEDSSALRIYTTTIPT 534 (591)
T ss_dssp CEEEEEETTSSEEEEECCCCCC
T ss_pred eEEEEEeCCCCeEEEEeCCCCC
Confidence 4554 5566679999875543
No 391
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=24.30 E-value=1.9e+02 Score=26.27 Aligned_cols=53 Identities=19% Similarity=0.186 Sum_probs=35.7
Q ss_pred EEEEECCCCeEEEEEeC-Cc--------eeee---eecCCceeEEEecCCCCEEEEeCCCCeEEE
Q 040361 298 IVLYGDDDLSLHLFSIN-GK--------HLAS---SESNGRLNCLELSACGQFLVCGGDQGQIVV 350 (413)
Q Consensus 298 ~l~~~~~d~~i~i~d~~-~~--------~~~~---~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v 350 (413)
.+..|+.+|.|.-.-+. .. .+.. .....+|..|.+++++.+|++++.++.++|
T Consensus 423 V~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V~~v 487 (495)
T 1q47_A 423 VMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 487 (495)
T ss_dssp EEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeEEEE
Confidence 46678888876544332 11 1111 124578999999999999999998887665
No 392
>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens}
Probab=22.55 E-value=4.5e+02 Score=24.08 Aligned_cols=69 Identities=17% Similarity=0.094 Sum_probs=40.1
Q ss_pred CCeEEEEEecCC--CEEEEeeCCCcEEEEEcc-CC--eEEEEEeCCCCCce-eeEEEccCCcEEEEECCCCeEEE
Q 040361 242 DIITCLYVSVEL--DIVISGSKDGTCVFHTLR-EG--RYVRSLCHPSGSAL-SKLAASRHGRIVLYGDDDLSLHL 310 (413)
Q Consensus 242 ~~i~~~~~~~~~--~~l~s~~~dg~i~vwd~~-~~--~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~d~~i~i 310 (413)
...++|+...-. ..+..|+.+|.|.-.-+. .+ ..+..+....+.+| ..+.++++...|++++.++.+++
T Consensus 387 ~~lT~IaVd~~~g~tV~FlGT~~G~l~Kv~~~~~~~~~~~ee~~v~~~~pi~~~l~l~~~~~~Lyv~s~~~V~~v 461 (528)
T 3ol2_B 387 IQLTAVAVTMEDGHTIAFLGDSQGQLHRVYLGPGSDGHPYSTQSIQQGSAVSRDLTFDGTFEHLYVMTQSTLLKV 461 (528)
T ss_dssp CCEEEEEEEEETTEEEEEEEETTSEEEEEECSSSCCSCCSEEEESSTTSCCCSCCEECTTSSEEEEECSSCEEEE
T ss_pred CceEEEEEEeecCeEEEEEECCCCeEEEEEEcCCCCeeEEeeeccCCCCcceeeEEEecCCCEEEEEeCCEEEEE
Confidence 346777765422 345678888887643332 21 22333333334566 47888888888888877665544
No 393
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=21.62 E-value=4.9e+02 Score=24.27 Aligned_cols=56 Identities=7% Similarity=0.080 Sum_probs=36.2
Q ss_pred EEEEeecCCCeEEEEEc-CCC----c-EEEEee--cCCCeEEEEEECCCCCEEEEccCCCcEEE
Q 040361 147 FLITCGNWENSFQVIAL-NDG----R-VVQSIR--QHRDVVSCVAVTTDGSILATGSYDTTVMV 202 (413)
Q Consensus 147 ~l~~~g~~d~~i~i~~~-~~~----~-~~~~~~--~h~~~v~~~~~~~~~~~l~s~s~dg~i~i 202 (413)
.++..|..+|.|.-.-. ..+ . .+..+. ....+|..+.++++...|+.++.++.+++
T Consensus 381 tVlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~~~~~LyV~s~~~V~qV 444 (590)
T 3nvq_A 381 HVLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAERRKLYVSSQWEVSQV 444 (590)
T ss_dssp EEEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCCCEEEEETTTTEEEEECSSEEEEE
T ss_pred EEEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCceeeEEEcCCCCEEEEEecceEEEc
Confidence 56667887887654333 222 1 123332 24567899999999899999888766554
Done!