Query 040362
Match_columns 356
No_of_seqs 113 out of 144
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 07:43:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040362.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040362hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04833 COBRA: COBRA-like pro 100.0 4.2E-75 9.2E-80 519.5 16.4 148 8-155 1-169 (169)
2 PF00553 CBM_2: Cellulose bind 91.6 0.46 1E-05 39.0 5.5 85 5-114 12-98 (101)
3 PF00553 CBM_2: Cellulose bind 84.4 5.8 0.00013 32.5 7.6 99 203-319 3-101 (101)
4 smart00637 CBD_II CBD_II domai 79.6 5 0.00011 32.0 5.4 46 3-52 4-49 (92)
5 PF03128 CXCXC: CXCXC repeat; 55.0 6.1 0.00013 22.8 0.7 8 180-187 7-14 (14)
6 PF10563 CdCA1: Cadmium carbon 47.1 3.8 8.2E-05 39.4 -1.5 14 197-210 5-18 (218)
7 smart00141 PDGF Platelet-deriv 46.2 31 0.00067 28.4 3.9 21 64-84 2-22 (83)
8 PF11403 Yeast_MT: Yeast metal 36.8 26 0.00055 25.3 1.7 8 182-189 9-17 (40)
9 COG5341 Uncharacterized protei 34.0 44 0.00096 30.1 3.2 39 283-321 45-83 (132)
10 PF10609 ParA: ParA/MinD ATPas 30.2 27 0.00059 28.7 1.2 15 70-85 4-18 (81)
11 cd00135 PDGF Platelet-derived 30.0 1E+02 0.0022 25.3 4.4 18 64-81 2-19 (86)
12 PF02718 Herpes_UL31: Herpesvi 23.4 55 0.0012 32.3 2.1 29 158-186 65-96 (258)
13 PHA02661 vascular endothelial 23.2 1.1E+02 0.0023 27.9 3.8 25 61-85 44-68 (146)
No 1
>PF04833 COBRA: COBRA-like protein; InterPro: IPR006918 In Arabidopsis thaliana (Mouse-ear cress) members of the family are all extracellular glycosyl-phosphatidyl inositol-anchored proteins (GPI-linked) []. The type example of the family is COBRA (Q94KT8 from SWISSPROT) and the family is generally annotated as COBRA-like (COBL). COBRA is involved in determining the orientation of cell expansion, probably by playing an important role in cellulose deposition. It may act by recruiting cellulose synthesizing complexes to discrete positions on the cell surface. Some members of this family are annotated as phytochelatin synthase, but these annotations are incorrect [].
Probab=100.00 E-value=4.2e-75 Score=519.51 Aligned_cols=148 Identities=60% Similarity=1.097 Sum_probs=145.2
Q ss_pred eEEEEEEecCccccccCCCCCeeeeeecCCeeEEeeccceEeecCCeeeec--CCccccccCCCeEEeCCCCCCCCceee
Q 040362 8 YVALVTINNIQMYRSIMTPGWTLGWMWAKKEVIWSIVGAQATDQGDCSKFK--NNIPHCCRRNPVIVDLLPGVPMNQQFI 85 (356)
Q Consensus 8 Y~A~VTi~N~q~~r~i~~pgW~L~W~W~~~E~IwsM~GA~~t~qgdC~~~k--~~~p~~C~k~P~IvDL~P~~~~d~qi~ 85 (356)
|+|+|||+|||+|||||.|||+|||+|+|+||||+|+||||+|||||++|+ +++||||+|+|+|||||||+|+|+|||
T Consensus 1 Y~A~VTi~N~~~yr~id~pgW~L~W~W~~~E~IwsM~GA~~tdqgdCs~~~~~~~~ph~C~k~P~IvDLpp~~~~n~qi~ 80 (169)
T PF04833_consen 1 YVAQVTISNYQPYRHIDNPGWNLGWTWAKKEFIWSMKGAQTTDQGDCSKFYKDGDFPHCCKKRPTIVDLPPGTPYNQQIG 80 (169)
T ss_pred CEEEEEEecCCeecccCCCCceEeeEEcCCEEEEEeeCceeccCCcccccccCCCCCcccCCCCEEEeCCCCCCCccccc
Confidence 999999999999999999999999999999999999999999999999998 889999999999999999999999999
Q ss_pred -----------------eeEEEEEEEeec--CCCCCcccCCcCeEEeCCCCCcccCCceeeCCccccCCCCcceeeEeee
Q 040362 86 -----------------YIVAKVLRVGLS--GTSNKTVRLPKNFYIFGPGPGYTCGAATIMVPTSFFSSNGRRKTYAMMT 146 (356)
Q Consensus 86 -----------------s~s~FQm~Vg~~--~~~n~t~~~P~nf~l~~pgPgYtCg~~~~V~Pt~f~~p~g~r~t~Al~T 146 (356)
|+|+|||+||++ +++|++++||+||+|++|||||+||+|++|+||+|+|+||||+||||||
T Consensus 81 nCCrgG~l~~~~~Dps~s~S~FQm~Vg~~pp~~~~~~~~~P~nf~l~~~~pgYtCg~~~~V~pT~f~~~~g~r~t~A~~T 160 (169)
T PF04833_consen 81 NCCRGGVLSSWAQDPSKSVSAFQMSVGKAPPGTNNTTVKPPQNFTLGGPGPGYTCGPPKRVSPTVFPDPDGRRTTQALMT 160 (169)
T ss_pred cccCCCEECCcccChhhCceEEEEEEeEeeccCCCceecCCcceEEcCCCCCcCCCCcceeCCceeeCCCCCEEEEEEEE
Confidence 999999999998 7777889999999999999999999999999999999999999999999
Q ss_pred eeeEEeeec
Q 040362 147 WTVTCTYSQ 155 (356)
Q Consensus 147 WqVtC~ysq 155 (356)
|||||||||
T Consensus 161 WqvtC~ysq 169 (169)
T PF04833_consen 161 WQVTCNYSQ 169 (169)
T ss_pred EeEEEEeeC
Confidence 999999997
No 2
>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) []. Structurally, cellulases and xylanases generally consist of a catalytic domain joined to a cellulose-binding domain (CBD) by a short linker sequence rich in proline and/or hydroxy-amino acids. The CBD domain is found either at the N-terminal or at the C-terminal extremity of these enzymes. As it is shown in the following schematic representation, there are two conserved cysteines in this CBD domain - one at each extremity of the domain - which have been shown [] to be involved in a disulphide bond. There are also four conserved tryptophan, two are involved in cellulose binding. The CBD of a number of bacterial cellulases has been shown to consist of about 105 amino acid residues [, ]. +-------------------------------------------------+ | | xCxxxxWxxxxxNxxxWxxxxxxxWxxxxxxxxWNxxxxxGxxxxxxxxxxCx 'C': conserved cysteine involved in a disulphide bond. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2CZN_A 2CWR_A 1HEH_C 1HEJ_C 3NDZ_E 3NDY_E 2XBD_A 1E5C_A 1XBD_A 1E5B_A ....
Probab=91.59 E-value=0.46 Score=39.00 Aligned_cols=85 Identities=21% Similarity=0.271 Sum_probs=57.6
Q ss_pred CCceEEEEEEecCccccccCCCCCeeeeeecCCeeEEeeccceEeecCCeeeecCCccccccCCCeEEeCCCCCCCCcee
Q 040362 5 ADGYVALVTINNIQMYRSIMTPGWTLGWMWAKKEVIWSIVGAQATDQGDCSKFKNNIPHCCRRNPVIVDLLPGVPMNQQF 84 (356)
Q Consensus 5 ~~~Y~A~VTi~N~q~~r~i~~pgW~L~W~W~~~E~IwsM~GA~~t~qgdC~~~k~~~p~~C~k~P~IvDL~P~~~~d~qi 84 (356)
.+||.++|+|.|... ..|+ ||+|.|+-..++-|=++.+|..+..|.=..+ -+ ..+|..|
T Consensus 12 ~~Gf~~~v~v~N~~~-~~i~--~W~v~~~~~~~~~i~~~Wna~~s~~g~~~~v----------------~~--~~wn~~i 70 (101)
T PF00553_consen 12 GGGFQGEVTVTNNGS-SPIN--GWTVTFTFPSGQTITSSWNATVSQSGNTVTV----------------TN--PSWNGTI 70 (101)
T ss_dssp SSEEEEEEEEEESSS-STEE--SEEEEEEESTTEEEEEEESCEEEEETTEEEE----------------EE--SSTCSEE
T ss_pred CCCeEEEEEEEECCC-CccC--CEEEEEEeCCCCEEeeeeccEEEecCCEEEE----------------Ec--CCcCccc
Confidence 589999999999877 4555 8999999998898889999988765431111 11 2356666
Q ss_pred e--eeEEEEEEEeecCCCCCcccCCcCeEEeC
Q 040362 85 I--YIVAKVLRVGLSGTSNKTVRLPKNFYIFG 114 (356)
Q Consensus 85 ~--s~s~FQm~Vg~~~~~n~t~~~P~nf~l~~ 114 (356)
+ +..+|=+++...+. ..+|.+.+|.|
T Consensus 71 ~~G~s~~~Gf~~~~~~~----~~~p~~~t~ng 98 (101)
T PF00553_consen 71 APGGSVTFGFQASGSGS----SAAPSTCTVNG 98 (101)
T ss_dssp EESEEEEEEEEEEESSS------SESEEEETT
T ss_pred CCCCeEEEEEEEeCCCC----CCCCcEEEEcC
Confidence 6 33445555555432 24688888865
No 3
>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) []. Structurally, cellulases and xylanases generally consist of a catalytic domain joined to a cellulose-binding domain (CBD) by a short linker sequence rich in proline and/or hydroxy-amino acids. The CBD domain is found either at the N-terminal or at the C-terminal extremity of these enzymes. As it is shown in the following schematic representation, there are two conserved cysteines in this CBD domain - one at each extremity of the domain - which have been shown [] to be involved in a disulphide bond. There are also four conserved tryptophan, two are involved in cellulose binding. The CBD of a number of bacterial cellulases has been shown to consist of about 105 amino acid residues [, ]. +-------------------------------------------------+ | | xCxxxxWxxxxxNxxxWxxxxxxxWxxxxxxxxWNxxxxxGxxxxxxxxxxCx 'C': conserved cysteine involved in a disulphide bond. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2CZN_A 2CWR_A 1HEH_C 1HEJ_C 3NDZ_E 3NDY_E 2XBD_A 1E5C_A 1XBD_A 1E5B_A ....
Probab=84.43 E-value=5.8 Score=32.53 Aligned_cols=99 Identities=20% Similarity=0.297 Sum_probs=61.8
Q ss_pred EeEEEeeccccceEEEEEEEeccCCcCccceeEEeecCCCCCcceEEEecceeCCCCCCCCccEEEEeccchhHHHhhhC
Q 040362 203 VHWHVKANYKKHWLAKITITNFNNQRDFTQWTLVFQHPNLKNVTKVYRFLYKPLNFYQPLNDTGMFYGIKYYNDLLMEAG 282 (356)
Q Consensus 203 IhWHVk~nYk~~W~vkiTi~N~~~~~ny~dW~~vvqhpn~~~~~~vySFN~t~l~~y~~~N~T~m~~Gl~~yN~ll~~~g 282 (356)
+-.-|..+.-+++.++|+|+|=.. ....+|.+-++.|.-.-+++++ |++.-. ..+++.+-+. .||-.|.
T Consensus 3 v~~~v~~~W~~Gf~~~v~v~N~~~-~~i~~W~v~~~~~~~~~i~~~W--na~~s~----~g~~~~v~~~-~wn~~i~--- 71 (101)
T PF00553_consen 3 VTYTVTNSWGGGFQGEVTVTNNGS-SPINGWTVTFTFPSGQTITSSW--NATVSQ----SGNTVTVTNP-SWNGTIA--- 71 (101)
T ss_dssp EEEEEEEESSSEEEEEEEEEESSS-STEESEEEEEEESTTEEEEEEE--SCEEEE----ETTEEEEEES-STCSEEE---
T ss_pred EEEEEecccCCCeEEEEEEEECCC-CccCCEEEEEEeCCCCEEeeee--ccEEEe----cCCEEEEEcC-CcCcccC---
Confidence 455677889999999999999663 6777999999998644455554 444211 1245666654 3443332
Q ss_pred CCCceeEEEEEeecCCCcccccCCCCceeeEEcCCcc
Q 040362 283 PYGYLQSELILGKDKNTFTLEKGRAFPSKVYVNGDEC 319 (356)
Q Consensus 283 ~~G~vQSeilf~Kd~~~ft~~~GwaFP~rVyFNGdeC 319 (356)
+|.- ..+-|.=.. ....+-|..+-|||..|
T Consensus 72 -~G~s-~~~Gf~~~~-----~~~~~~p~~~t~ng~~C 101 (101)
T PF00553_consen 72 -PGGS-VTFGFQASG-----SGSSAAPSTCTVNGAPC 101 (101)
T ss_dssp -ESEE-EEEEEEEEE-----SSS--SESEEEETTEEE
T ss_pred -CCCe-EEEEEEEeC-----CCCCCCCcEEEEcCeeC
Confidence 2322 234444331 22334599999999998
No 4
>smart00637 CBD_II CBD_II domain.
Probab=79.56 E-value=5 Score=32.01 Aligned_cols=46 Identities=26% Similarity=0.493 Sum_probs=35.6
Q ss_pred ccCCceEEEEEEecCccccccCCCCCeeeeeecCCeeEEeeccceEeecC
Q 040362 3 WTADGYVALVTINNIQMYRSIMTPGWTLGWMWAKKEVIWSIVGAQATDQG 52 (356)
Q Consensus 3 wt~~~Y~A~VTi~N~q~~r~i~~pgW~L~W~W~~~E~IwsM~GA~~t~qg 52 (356)
|. +||.+.|+|.|..-. .|+ +|.|.|+-..++-|-++..|..+..|
T Consensus 4 W~-~G~~~~v~vtN~~~~-~~~--~W~v~~~~~~~~~i~~~Wn~~~~~~g 49 (92)
T smart00637 4 WG-SGFTANVTVTNTGSS-AIN--GWTVTFDLPGGQTVTNSWNATVSQSG 49 (92)
T ss_pred CC-CCEEEEEEEEeCCCC-ccc--CeEEEEEcCCCcEEeeeEEEEEEecC
Confidence 54 489999999997543 354 99999999888878788777766543
No 5
>PF03128 CXCXC: CXCXC repeat; InterPro: IPR004153 This repeat contains the conserved pattern CXCXC where X can be any amino acid. The repeat is found in up to five copies in Vascular endothelial growth factor C []. In the salivary glands of the dipteran Chironomus tentans, a specific messenger ribonucleoprotein (mRNP) particle, the Balbiani ring (BR) granule, can be visualized during its assembly on the gene and during its nucleocytoplasmic transport. This repeat is found over 70 copies in the balbiani ring protein 3 (Q03376 from SWISSPROT). It is also found in some silk proteins [].
Probab=54.98 E-value=6.1 Score=22.79 Aligned_cols=8 Identities=38% Similarity=1.377 Sum_probs=6.3
Q ss_pred CCCCcCCC
Q 040362 180 PSCSCGCG 187 (356)
Q Consensus 180 ~tCaCGC~ 187 (356)
.||+|+|+
T Consensus 7 ~tC~C~Cp 14 (14)
T PF03128_consen 7 DTCQCECP 14 (14)
T ss_pred CCcCccCC
Confidence 47999985
No 6
>PF10563 CdCA1: Cadmium carbonic anhydrase repeat; InterPro: IPR018883 This entry represents the cadmium-binding carbonic anhydrase domain of marine diatoms []. The prevalence of carbonic anhydrase in diatoms that contain Cd at their active site probably reflects the very low concentration of Zn in the marine environment and the difficulty in acquiring inorganic carbon for photosynthesis. Compared with alpha- and gamma-carbonic anhydrases that use three histidines to coordinate the zinc-atom, this beta-carbonic anhydrase has two cysteines and one histidine, and rapidly binds cadmium []. ; PDB: 3BOH_A 3BOJ_A 3BOC_A 3BOE_A 3BOB_A.
Probab=47.12 E-value=3.8 Score=39.41 Aligned_cols=14 Identities=50% Similarity=1.341 Sum_probs=7.4
Q ss_pred CCcceEEeEEEeec
Q 040362 197 NTCPIRVHWHVKAN 210 (356)
Q Consensus 197 ~mCpV~IhWHVk~n 210 (356)
.||||+||||+-.-
T Consensus 5 ~mc~vnvhwHlgaE 18 (218)
T PF10563_consen 5 SMCPVNVHWHLGAE 18 (218)
T ss_dssp EEEECGGG------
T ss_pred eeeeeeeecccccc
Confidence 59999999999873
No 7
>smart00141 PDGF Platelet-derived and vascular endothelial growth factors (PDGF, VEGF) family. Platelet-derived growth factor is a potent activator for cells of mesenchymal origin. PDGF-A and PDGF-B form AA and BB homodimers and an AB heterodimer. Members of the VEGF family are homologues of PDGF.
Probab=46.22 E-value=31 Score=28.38 Aligned_cols=21 Identities=24% Similarity=0.521 Sum_probs=17.5
Q ss_pred cccCCCeEEeCCCCCCCCcee
Q 040362 64 CCRRNPVIVDLLPGVPMNQQF 84 (356)
Q Consensus 64 ~C~k~P~IvDL~P~~~~d~qi 84 (356)
.|+.|++||||.++-|.+...
T Consensus 2 ~C~pre~~V~i~~e~~~~~~~ 22 (83)
T smart00141 2 ECKPREVVVEVSREYPDETNF 22 (83)
T ss_pred CCceeeEEEECchhcCCccCc
Confidence 599999999999988776543
No 8
>PF11403 Yeast_MT: Yeast metallothionein; InterPro: IPR022710 Metallothioneins are characterised by an abundance of cysteine residues and a lack of generic secondary structure motifs. This protein functions in primary metal storage, transport and detoxification []. For the first 40 residues in the protein the polypeptide wraps around the metal by forming two large parallel loops separated by a deep cleft containing the metal cluster []. ; PDB: 1AQS_A 1AQR_A 1RJU_V 1FMY_A 1AOO_A 1AQQ_A.
Probab=36.83 E-value=26 Score=25.33 Aligned_cols=8 Identities=63% Similarity=1.867 Sum_probs=3.4
Q ss_pred CCcC-CCCC
Q 040362 182 CSCG-CGNE 189 (356)
Q Consensus 182 CaCG-C~~~ 189 (356)
|.|| |.++
T Consensus 9 cqcgscknn 17 (40)
T PF11403_consen 9 CQCGSCKNN 17 (40)
T ss_dssp -SSSTTTT-
T ss_pred eecCCccCh
Confidence 5555 5555
No 9
>COG5341 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.03 E-value=44 Score=30.08 Aligned_cols=39 Identities=26% Similarity=0.361 Sum_probs=33.9
Q ss_pred CCCceeEEEEEeecCCCcccccCCCCceeeEEcCCcccC
Q 040362 283 PYGYLQSELILGKDKNTFTLEKGRAFPSKVYVNGDECMM 321 (356)
Q Consensus 283 ~~G~vQSeilf~Kd~~~ft~~~GwaFP~rVyFNGdeC~m 321 (356)
-.|++=-++.++|...+|++++-+||=-+|-|.|+|=+.
T Consensus 45 v~Gk~~r~i~l~Kg~~t~~v~~~~g~~n~vev~g~~IRV 83 (132)
T COG5341 45 VDGKVIRTIPLTKGNETFDVKENGGFYNKVEVKGNRIRV 83 (132)
T ss_pred ECCEEEEEEEcccCCccEEEEcCCCceEEEEEcCCEEEE
Confidence 368888888899888999999999999999999987543
No 10
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=30.22 E-value=27 Score=28.73 Aligned_cols=15 Identities=33% Similarity=0.722 Sum_probs=9.2
Q ss_pred eEEeCCCCCCCCceee
Q 040362 70 VIVDLLPGVPMNQQFI 85 (356)
Q Consensus 70 ~IvDL~P~~~~d~qi~ 85 (356)
.|||||||+ -|.++.
T Consensus 4 LiiD~PPGT-gD~~l~ 18 (81)
T PF10609_consen 4 LIIDLPPGT-GDEHLT 18 (81)
T ss_dssp EEEE--SCS-SSHHHH
T ss_pred EEEeCCCCC-CcHHHH
Confidence 589999999 454544
No 11
>cd00135 PDGF Platelet-derived and vascular endothelial growth factors (PDGF, VEGF) family domain; PDGF is a potent activator for cells of mesenchymal origin; PDGF-A and PDGF-B form AA and BB homodimers and an AB heterodimer; VEGF is a potent mitogen in embryonic and somatic angiogenesis with a unique specificity for vascular endothelial cells; VEGF forms homodimers and exists in 4 different isoforms; overall, the VEGF monomer resembles that of PDGF, but its N-terminal segment is helical rather than extended; the cysteine knot motif is a common feature of this domain
Probab=29.96 E-value=1e+02 Score=25.31 Aligned_cols=18 Identities=17% Similarity=0.534 Sum_probs=16.2
Q ss_pred cccCCCeEEeCCCCCCCC
Q 040362 64 CCRRNPVIVDLLPGVPMN 81 (356)
Q Consensus 64 ~C~k~P~IvDL~P~~~~d 81 (356)
.|+.++++|||.++-+.+
T Consensus 2 ~C~Pr~~~V~i~~e~~~~ 19 (86)
T cd00135 2 SCKPRETLVEISEELPDE 19 (86)
T ss_pred ccccccEEEECcccCCCC
Confidence 599999999999998875
No 12
>PF02718 Herpes_UL31: Herpesvirus UL31-like protein; InterPro: IPR021152 This is a family of Herpesvirus proteins, belong to the UL31 family, which including UL31, UL53, and the product of ORF69 in some strains. The proteins in this family have no known function.
Probab=23.36 E-value=55 Score=32.29 Aligned_cols=29 Identities=38% Similarity=0.681 Sum_probs=22.1
Q ss_pred cCCCCcceEEeccccCCCcc--cCCCC-CcCC
Q 040362 158 ASKNPKCCVSLSSFYNPMIT--PCPSC-SCGC 186 (356)
Q Consensus 158 ~~k~P~CCVSfSsfYN~siv--pC~tC-aCGC 186 (356)
.+-.|-.|.|||+|=|+.+. -|++| +=|.
T Consensus 65 ~~~~p~~CL~LSp~G~~~~~g~~C~~C~~~~~ 96 (258)
T PF02718_consen 65 SSHAPGRCLSLSPMGYSLGMGGCCPTCTSSGE 96 (258)
T ss_pred cccCCCCceeccCCcccCccCccCCCCCCCCC
Confidence 34578999999999998876 48877 4444
No 13
>PHA02661 vascular endothelial growth factor like protein; Provisional
Probab=23.21 E-value=1.1e+02 Score=27.94 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=20.2
Q ss_pred ccccccCCCeEEeCCCCCCCCceee
Q 040362 61 IPHCCRRNPVIVDLLPGVPMNQQFI 85 (356)
Q Consensus 61 ~p~~C~k~P~IvDL~P~~~~d~qi~ 85 (356)
....|+.|+++|||..+-|.+...-
T Consensus 44 ~~s~CkPRetvV~I~~E~p~~~n~~ 68 (146)
T PHA02661 44 DKSSCQPRDTVVQLSDEYPGNTNDR 68 (146)
T ss_pred hccCceeeeEEEECccccCccccce
Confidence 4668999999999999887765433
Done!