Query 040365
Match_columns 514
No_of_seqs 731 out of 3925
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 07:44:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040365.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040365hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 1E-118 3E-123 950.5 59.9 514 1-514 184-697 (697)
2 PLN03077 Protein ECB2; Provisi 100.0 5E-113 1E-117 928.3 59.3 509 1-512 349-857 (857)
3 PLN03077 Protein ECB2; Provisi 100.0 1.2E-67 2.7E-72 573.4 38.6 481 1-488 147-652 (857)
4 PLN03081 pentatricopeptide (PP 100.0 3.7E-64 8E-69 534.0 44.3 489 4-509 85-583 (697)
5 PLN03218 maturation of RBCL 1; 100.0 1.2E-60 2.6E-65 510.7 43.5 475 8-493 408-912 (1060)
6 PLN03218 maturation of RBCL 1; 100.0 1.6E-58 3.4E-63 494.5 47.3 418 1-431 432-886 (1060)
7 PF14432 DYW_deaminase: DYW fa 100.0 9.1E-35 2E-39 230.1 8.5 106 381-504 2-116 (116)
8 TIGR02917 PEP_TPR_lipo putativ 99.9 4.5E-23 9.7E-28 227.7 44.4 364 4-376 497-868 (899)
9 TIGR02917 PEP_TPR_lipo putativ 99.9 6.8E-23 1.5E-27 226.3 45.0 362 4-374 463-832 (899)
10 PRK11788 tetratricopeptide rep 99.9 9.9E-20 2.1E-24 181.5 31.2 290 86-381 45-354 (389)
11 TIGR00990 3a0801s09 mitochondr 99.9 5E-18 1.1E-22 178.5 42.1 357 9-374 130-571 (615)
12 PRK11788 tetratricopeptide rep 99.9 9.5E-19 2.1E-23 174.4 33.6 286 50-340 44-347 (389)
13 PRK15174 Vi polysaccharide exp 99.8 2.9E-17 6.3E-22 172.4 41.0 326 11-345 47-386 (656)
14 KOG4626 O-linked N-acetylgluco 99.8 1.9E-18 4.2E-23 166.1 26.1 356 7-374 117-485 (966)
15 KOG4626 O-linked N-acetylgluco 99.8 1.4E-17 3.1E-22 160.2 28.4 351 4-365 148-510 (966)
16 PRK15174 Vi polysaccharide exp 99.8 1.3E-16 2.8E-21 167.6 38.5 326 42-375 43-382 (656)
17 PRK11447 cellulose synthase su 99.8 2.4E-16 5.2E-21 176.5 42.9 354 13-375 276-701 (1157)
18 PRK11447 cellulose synthase su 99.8 6.8E-16 1.5E-20 172.9 45.4 361 5-378 302-745 (1157)
19 PRK10049 pgaA outer membrane p 99.8 7.6E-16 1.7E-20 165.1 41.3 360 9-374 52-456 (765)
20 TIGR00990 3a0801s09 mitochondr 99.8 8.3E-15 1.8E-19 154.2 40.6 354 3-373 157-596 (615)
21 PRK10049 pgaA outer membrane p 99.8 3.4E-15 7.3E-20 160.1 35.8 357 11-375 20-423 (765)
22 PRK14574 hmsH outer membrane p 99.7 7.8E-13 1.7E-17 139.8 43.8 361 11-374 73-513 (822)
23 PRK09782 bacteriophage N4 rece 99.7 5E-13 1.1E-17 144.1 43.1 353 10-375 186-707 (987)
24 PRK14574 hmsH outer membrane p 99.7 5E-13 1.1E-17 141.2 40.7 359 9-374 38-479 (822)
25 PRK09782 bacteriophage N4 rece 99.7 9.3E-13 2E-17 142.0 38.0 347 20-377 356-743 (987)
26 KOG4422 Uncharacterized conser 99.6 4.4E-12 9.5E-17 117.8 34.4 332 3-341 204-591 (625)
27 PF13429 TPR_15: Tetratricopep 99.6 5.6E-15 1.2E-19 139.9 11.5 255 113-372 14-275 (280)
28 KOG2076 RNA polymerase III tra 99.6 1E-11 2.2E-16 125.6 33.5 331 51-384 149-522 (895)
29 KOG4422 Uncharacterized conser 99.6 9.9E-12 2.1E-16 115.5 30.1 317 6-339 116-461 (625)
30 PRK10747 putative protoheme IX 99.5 1.4E-11 2.9E-16 122.3 30.5 278 54-341 97-391 (398)
31 TIGR00540 hemY_coli hemY prote 99.5 6.7E-11 1.5E-15 118.0 34.2 282 53-339 96-398 (409)
32 PF13429 TPR_15: Tetratricopep 99.5 1.4E-13 3E-18 130.4 12.4 254 12-269 14-274 (280)
33 PRK10747 putative protoheme IX 99.5 5.2E-11 1.1E-15 118.2 30.6 275 89-373 97-389 (398)
34 KOG2003 TPR repeat-containing 99.5 1.2E-10 2.6E-15 109.0 29.9 340 14-360 284-709 (840)
35 TIGR00540 hemY_coli hemY prote 99.5 7.2E-11 1.6E-15 117.8 30.0 291 9-305 85-396 (409)
36 KOG2002 TPR-containing nuclear 99.5 3E-10 6.6E-15 115.9 33.9 367 4-376 268-677 (1018)
37 KOG0495 HAT repeat protein [RN 99.5 2.4E-09 5.3E-14 104.9 38.0 370 7-388 517-892 (913)
38 KOG1126 DNA-binding cell divis 99.5 1.6E-11 3.4E-16 120.6 22.9 275 91-375 334-621 (638)
39 KOG1155 Anaphase-promoting com 99.4 1.6E-09 3.5E-14 102.1 33.3 314 50-373 173-494 (559)
40 COG2956 Predicted N-acetylgluc 99.4 2.7E-10 5.9E-15 102.6 26.9 267 19-321 48-325 (389)
41 KOG0547 Translocase of outer m 99.4 4E-10 8.6E-15 106.8 29.1 352 12-372 121-564 (606)
42 KOG1126 DNA-binding cell divis 99.4 1.8E-11 3.9E-16 120.2 20.8 244 122-374 334-586 (638)
43 KOG4318 Bicoid mRNA stability 99.4 7.2E-12 1.6E-16 126.0 17.8 265 128-432 11-276 (1088)
44 PF13041 PPR_2: PPR repeat fam 99.4 4.1E-13 8.9E-18 90.2 6.1 50 4-53 1-50 (50)
45 KOG1915 Cell cycle control pro 99.4 3.2E-09 6.9E-14 100.4 33.5 174 207-384 321-510 (677)
46 COG3071 HemY Uncharacterized e 99.4 2.9E-09 6.4E-14 98.9 32.1 287 19-340 97-390 (400)
47 KOG2002 TPR-containing nuclear 99.4 8.2E-10 1.8E-14 112.9 30.9 360 8-375 309-746 (1018)
48 KOG0495 HAT repeat protein [RN 99.4 8.8E-09 1.9E-13 101.1 36.4 361 16-385 416-791 (913)
49 TIGR02521 type_IV_pilW type IV 99.4 1.8E-10 4E-15 105.5 24.1 199 175-374 29-232 (234)
50 PF13041 PPR_2: PPR repeat fam 99.4 2.2E-12 4.8E-17 86.6 6.7 50 105-154 1-50 (50)
51 KOG1840 Kinesin light chain [C 99.4 4E-10 8.7E-15 111.7 25.2 232 141-372 198-477 (508)
52 KOG2076 RNA polymerase III tra 99.3 9.3E-09 2E-13 104.6 33.5 355 16-374 150-555 (895)
53 KOG1173 Anaphase-promoting com 99.3 4E-09 8.6E-14 102.0 29.3 260 107-372 244-516 (611)
54 KOG1155 Anaphase-promoting com 99.3 5.6E-09 1.2E-13 98.6 28.9 284 48-340 234-536 (559)
55 COG3071 HemY Uncharacterized e 99.3 6.2E-09 1.4E-13 96.8 27.8 276 89-374 97-390 (400)
56 COG2956 Predicted N-acetylgluc 99.3 7.5E-09 1.6E-13 93.5 27.4 285 90-382 49-355 (389)
57 KOG4318 Bicoid mRNA stability 99.3 8.7E-10 1.9E-14 111.4 22.8 256 27-294 11-286 (1088)
58 KOG2003 TPR repeat-containing 99.3 4.4E-09 9.6E-14 98.7 25.8 180 190-374 503-689 (840)
59 PRK12370 invasion protein regu 99.2 1.1E-08 2.3E-13 106.2 29.2 258 105-375 254-536 (553)
60 TIGR02521 type_IV_pilW type IV 99.2 4E-09 8.7E-14 96.5 22.8 194 41-236 31-231 (234)
61 KOG1915 Cell cycle control pro 99.2 4.7E-07 1E-11 86.1 36.0 365 3-375 104-537 (677)
62 PRK12370 invasion protein regu 99.2 9.6E-09 2.1E-13 106.5 27.7 242 55-306 275-533 (553)
63 KOG1129 TPR repeat-containing 99.2 1.7E-09 3.6E-14 97.6 17.4 225 146-375 227-459 (478)
64 KOG1174 Anaphase-promoting com 99.1 8.6E-08 1.9E-12 89.4 26.9 302 39-346 192-506 (564)
65 KOG1173 Anaphase-promoting com 99.1 5.2E-08 1.1E-12 94.4 25.4 252 12-268 250-514 (611)
66 PRK11189 lipoprotein NlpI; Pro 99.1 5.2E-08 1.1E-12 92.7 23.2 213 157-376 41-267 (296)
67 KOG1840 Kinesin light chain [C 99.1 4.8E-08 1E-12 97.2 23.1 231 109-339 201-478 (508)
68 PRK11189 lipoprotein NlpI; Pro 99.0 2.7E-07 5.8E-12 87.8 26.4 218 121-346 40-271 (296)
69 KOG0547 Translocase of outer m 98.9 4.8E-06 1E-10 79.7 30.5 218 117-341 336-567 (606)
70 COG3063 PilF Tfp pilus assembl 98.9 1.2E-07 2.7E-12 82.0 17.9 162 210-376 37-204 (250)
71 KOG1129 TPR repeat-containing 98.9 5.1E-08 1.1E-12 88.2 15.6 220 45-269 227-455 (478)
72 PF12569 NARP1: NMDA receptor- 98.9 4.8E-06 1E-10 84.0 30.9 149 13-167 11-168 (517)
73 cd05804 StaR_like StaR_like; a 98.9 9E-06 1.9E-10 79.9 31.5 197 179-375 116-337 (355)
74 PF12569 NARP1: NMDA receptor- 98.9 2.2E-06 4.7E-11 86.5 26.4 148 226-376 129-293 (517)
75 cd05804 StaR_like StaR_like; a 98.8 2.1E-05 4.6E-10 77.3 31.9 198 5-204 5-213 (355)
76 KOG1156 N-terminal acetyltrans 98.8 4.9E-05 1.1E-09 75.5 33.2 364 18-387 53-486 (700)
77 KOG1125 TPR repeat-containing 98.8 6.2E-07 1.4E-11 87.5 18.7 219 152-373 295-526 (579)
78 KOG0624 dsRNA-activated protei 98.8 2.7E-05 5.8E-10 71.5 27.2 192 148-345 161-375 (504)
79 PF04733 Coatomer_E: Coatomer 98.8 2E-07 4.3E-12 87.6 14.3 80 294-373 182-264 (290)
80 KOG2047 mRNA splicing factor [ 98.8 0.00011 2.3E-09 73.0 33.1 351 7-369 103-535 (835)
81 KOG1070 rRNA processing protei 98.7 1.2E-06 2.6E-11 93.3 21.1 201 174-378 1455-1667(1710)
82 PRK04841 transcriptional regul 98.7 2.6E-05 5.6E-10 86.8 33.5 324 52-375 385-761 (903)
83 PF04733 Coatomer_E: Coatomer 98.7 1.4E-06 3.1E-11 81.8 19.8 161 178-345 103-270 (290)
84 COG3063 PilF Tfp pilus assembl 98.7 6.1E-06 1.3E-10 71.7 21.4 188 152-343 45-239 (250)
85 KOG3785 Uncharacterized conser 98.7 9.6E-06 2.1E-10 74.6 23.6 114 257-375 373-491 (557)
86 KOG1174 Anaphase-promoting com 98.7 8.4E-05 1.8E-09 70.0 29.6 56 315-371 442-497 (564)
87 KOG3616 Selective LIM binding 98.7 5.6E-06 1.2E-10 82.8 22.6 102 120-232 745-848 (1636)
88 KOG2376 Signal recognition par 98.7 0.00019 4.1E-09 70.7 32.0 142 223-370 356-516 (652)
89 PF12854 PPR_1: PPR repeat 98.7 3.8E-08 8.2E-13 59.3 4.4 34 171-204 1-34 (34)
90 PF12854 PPR_1: PPR repeat 98.7 3.5E-08 7.6E-13 59.5 4.1 33 71-103 2-34 (34)
91 KOG4162 Predicted calmodulin-b 98.7 8.4E-05 1.8E-09 75.3 30.0 365 5-375 322-784 (799)
92 KOG2047 mRNA splicing factor [ 98.7 0.00036 7.7E-09 69.5 33.5 152 221-374 524-687 (835)
93 KOG1156 N-terminal acetyltrans 98.6 0.00021 4.6E-09 71.1 30.9 362 6-376 8-436 (700)
94 KOG3785 Uncharacterized conser 98.6 0.0002 4.3E-09 66.2 27.7 88 284-371 364-454 (557)
95 KOG0548 Molecular co-chaperone 98.6 6.8E-05 1.5E-09 73.0 25.5 212 150-375 232-456 (539)
96 TIGR03302 OM_YfiO outer membra 98.5 1.2E-05 2.6E-10 73.9 19.6 180 175-374 31-232 (235)
97 KOG1070 rRNA processing protei 98.5 3.3E-05 7.1E-10 82.8 24.2 220 39-259 1455-1687(1710)
98 KOG4340 Uncharacterized conser 98.5 9.5E-05 2.1E-09 66.7 23.6 290 9-305 13-372 (459)
99 KOG4162 Predicted calmodulin-b 98.5 0.0018 4E-08 66.0 36.4 197 35-236 317-541 (799)
100 PRK04841 transcriptional regul 98.5 0.00031 6.8E-09 78.2 33.8 326 17-343 385-763 (903)
101 KOG2376 Signal recognition par 98.5 0.00071 1.5E-08 66.8 31.0 336 13-369 19-400 (652)
102 PRK15359 type III secretion sy 98.5 5.2E-06 1.1E-10 69.6 14.2 121 229-356 14-137 (144)
103 KOG4340 Uncharacterized conser 98.5 4.8E-05 1E-09 68.6 20.5 286 44-370 13-335 (459)
104 KOG1128 Uncharacterized conser 98.5 8.6E-06 1.9E-10 81.8 16.8 191 172-377 393-585 (777)
105 PLN02789 farnesyltranstransfer 98.4 8.3E-05 1.8E-09 70.9 22.9 228 109-372 39-300 (320)
106 PRK10370 formate-dependent nit 98.4 2.3E-05 5E-10 69.5 17.9 117 256-375 52-174 (198)
107 TIGR00756 PPR pentatricopeptid 98.4 4.6E-07 1E-11 55.4 4.3 35 7-41 1-35 (35)
108 PRK10370 formate-dependent nit 98.4 5.6E-05 1.2E-09 67.0 19.0 154 184-349 23-182 (198)
109 KOG0985 Vesicle coat protein c 98.4 0.001 2.3E-08 69.4 29.4 254 90-373 1089-1369(1666)
110 KOG0985 Vesicle coat protein c 98.4 0.00027 5.9E-09 73.6 25.3 189 152-371 1058-1246(1666)
111 PRK15363 pathogenicity island 98.3 1.9E-05 4.1E-10 65.4 13.7 119 278-419 34-154 (157)
112 KOG3617 WD40 and TPR repeat-co 98.3 0.00083 1.8E-08 68.7 27.5 326 5-369 756-1169(1416)
113 TIGR03302 OM_YfiO outer membra 98.3 7.2E-05 1.6E-09 68.8 19.0 181 140-342 31-234 (235)
114 KOG1125 TPR repeat-containing 98.3 5.4E-05 1.2E-09 74.3 18.3 246 116-366 294-563 (579)
115 PRK15359 type III secretion sy 98.3 9.6E-06 2.1E-10 68.0 11.7 99 275-375 22-122 (144)
116 KOG3616 Selective LIM binding 98.3 0.00089 1.9E-08 67.6 26.7 52 322-375 974-1025(1636)
117 KOG0548 Molecular co-chaperone 98.3 0.00027 5.8E-09 69.0 22.5 345 15-374 11-421 (539)
118 PLN02789 farnesyltranstransfer 98.3 0.00079 1.7E-08 64.3 25.4 207 78-291 39-267 (320)
119 TIGR00756 PPR pentatricopeptid 98.3 1.4E-06 3E-11 53.2 4.4 35 209-243 1-35 (35)
120 PF13812 PPR_3: Pentatricopept 98.3 1.5E-06 3.1E-11 52.7 4.2 34 6-39 1-34 (34)
121 KOG1128 Uncharacterized conser 98.2 0.00013 2.9E-09 73.5 19.7 212 145-375 401-617 (777)
122 PRK14720 transcript cleavage f 98.2 0.00046 1E-08 73.5 24.7 240 37-322 26-268 (906)
123 COG4783 Putative Zn-dependent 98.2 0.00091 2E-08 64.8 24.0 175 193-373 253-436 (484)
124 PRK15179 Vi polysaccharide bio 98.2 0.00022 4.8E-09 75.0 21.7 141 206-351 84-228 (694)
125 KOG1127 TPR repeat-containing 98.2 0.00049 1.1E-08 71.8 22.6 338 22-370 474-909 (1238)
126 PRK15179 Vi polysaccharide bio 98.2 0.00059 1.3E-08 71.9 23.4 141 173-318 82-229 (694)
127 PF13812 PPR_3: Pentatricopept 98.1 4E-06 8.7E-11 50.7 4.3 34 107-140 1-34 (34)
128 TIGR02552 LcrH_SycD type III s 98.1 5.1E-05 1.1E-09 63.0 12.3 100 275-374 12-114 (135)
129 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00015 3.2E-09 70.7 16.9 122 246-372 172-295 (395)
130 COG5010 TadD Flp pilus assembl 98.1 0.00056 1.2E-08 61.0 18.4 158 75-235 66-229 (257)
131 PRK14720 transcript cleavage f 98.1 0.0013 2.8E-08 70.2 24.2 238 3-290 28-268 (906)
132 COG4783 Putative Zn-dependent 98.1 0.0031 6.8E-08 61.2 24.6 109 154-264 318-429 (484)
133 COG5010 TadD Flp pilus assembl 98.1 0.00053 1.1E-08 61.2 17.9 152 181-336 70-227 (257)
134 KOG1127 TPR repeat-containing 98.1 0.0036 7.8E-08 65.7 26.3 128 242-372 849-994 (1238)
135 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00017 3.8E-09 70.2 16.0 127 178-308 170-297 (395)
136 KOG3617 WD40 and TPR repeat-co 98.0 0.00086 1.9E-08 68.6 20.7 240 74-338 724-994 (1416)
137 PF01535 PPR: PPR repeat; Int 98.0 5.6E-06 1.2E-10 48.9 3.5 31 7-37 1-31 (31)
138 KOG3081 Vesicle coat complex C 98.0 0.0057 1.2E-07 54.8 23.2 134 165-305 96-233 (299)
139 PF04840 Vps16_C: Vps16, C-ter 98.0 0.017 3.7E-07 55.1 29.2 104 184-304 184-287 (319)
140 PF01535 PPR: PPR repeat; Int 97.9 1.6E-05 3.4E-10 46.9 3.5 31 209-239 1-31 (31)
141 KOG2053 Mitochondrial inherita 97.9 0.051 1.1E-06 56.8 33.9 68 313-380 438-508 (932)
142 KOG3081 Vesicle coat complex C 97.9 0.0034 7.4E-08 56.2 18.6 244 114-373 15-270 (299)
143 TIGR02552 LcrH_SycD type III s 97.8 0.00053 1.2E-08 56.8 13.3 87 149-236 24-113 (135)
144 PF09976 TPR_21: Tetratricopep 97.8 0.00084 1.8E-08 56.4 14.4 114 256-370 24-143 (145)
145 cd00189 TPR Tetratricopeptide 97.8 0.00026 5.5E-09 53.8 10.4 92 282-373 3-96 (100)
146 KOG3060 Uncharacterized conser 97.8 0.002 4.4E-08 57.1 16.5 181 190-375 25-221 (289)
147 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.00084 1.8E-08 54.0 12.5 100 247-346 6-111 (119)
148 PF13414 TPR_11: TPR repeat; P 97.7 0.00013 2.9E-09 52.3 6.8 64 310-373 2-66 (69)
149 PF12895 Apc3: Anaphase-promot 97.7 7.3E-05 1.6E-09 56.2 5.1 78 292-370 2-83 (84)
150 KOG3060 Uncharacterized conser 97.7 0.011 2.5E-07 52.5 19.0 191 154-349 24-229 (289)
151 PF09976 TPR_21: Tetratricopep 97.7 0.0027 5.8E-08 53.3 15.0 123 8-132 14-143 (145)
152 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.00099 2.1E-08 53.5 11.4 96 280-375 3-106 (119)
153 KOG0624 dsRNA-activated protei 97.6 0.061 1.3E-06 50.1 24.1 289 81-375 43-371 (504)
154 PF13432 TPR_16: Tetratricopep 97.5 0.00034 7.4E-09 49.5 6.5 58 317-374 3-60 (65)
155 KOG1538 Uncharacterized conser 97.5 0.013 2.8E-07 58.7 19.2 233 7-311 557-806 (1081)
156 KOG1914 mRNA cleavage and poly 97.5 0.12 2.6E-06 51.2 33.5 159 210-371 368-536 (656)
157 PLN03088 SGT1, suppressor of 97.5 0.00091 2E-08 65.3 11.1 105 249-356 8-115 (356)
158 PRK02603 photosystem I assembl 97.5 0.0053 1.1E-07 53.2 14.4 130 207-360 34-166 (172)
159 PLN03088 SGT1, suppressor of 97.5 0.0025 5.5E-08 62.2 13.6 100 215-318 9-110 (356)
160 PF05843 Suf: Suppressor of fo 97.4 0.0069 1.5E-07 57.0 15.3 133 209-344 2-140 (280)
161 PF06239 ECSIT: Evolutionarily 97.4 0.0017 3.7E-08 56.6 10.1 98 197-295 34-154 (228)
162 PF08579 RPM2: Mitochondrial r 97.4 0.0025 5.3E-08 49.3 9.7 79 10-88 29-116 (120)
163 KOG1914 mRNA cleavage and poly 97.4 0.029 6.2E-07 55.4 19.0 125 144-269 368-498 (656)
164 PRK02603 photosystem I assembl 97.3 0.0033 7.2E-08 54.5 11.7 82 279-360 35-121 (172)
165 PRK10153 DNA-binding transcrip 97.3 0.012 2.5E-07 60.3 17.2 64 310-374 419-482 (517)
166 cd00189 TPR Tetratricopeptide 97.3 0.0031 6.7E-08 47.6 10.4 58 211-269 3-60 (100)
167 PF14559 TPR_19: Tetratricopep 97.3 0.00039 8.5E-09 49.7 4.7 53 322-374 2-54 (68)
168 PF04840 Vps16_C: Vps16, C-ter 97.3 0.17 3.7E-06 48.3 25.8 111 244-371 178-288 (319)
169 PRK15331 chaperone protein Sic 97.3 0.0031 6.7E-08 52.7 10.3 88 286-373 44-133 (165)
170 PF03704 BTAD: Bacterial trans 97.3 0.0047 1E-07 51.9 11.7 69 312-380 63-136 (146)
171 PF08579 RPM2: Mitochondrial r 97.3 0.0041 8.9E-08 48.1 9.9 81 109-189 27-116 (120)
172 CHL00033 ycf3 photosystem I as 97.3 0.0035 7.7E-08 54.1 11.1 93 279-371 35-139 (168)
173 PF05843 Suf: Suppressor of fo 97.3 0.0054 1.2E-07 57.7 13.1 139 7-149 2-147 (280)
174 PF06239 ECSIT: Evolutionarily 97.3 0.011 2.4E-07 51.6 13.6 105 139-258 44-153 (228)
175 PF12895 Apc3: Anaphase-promot 97.3 0.0011 2.3E-08 49.8 6.7 80 221-304 2-83 (84)
176 KOG0553 TPR repeat-containing 97.3 0.0029 6.3E-08 57.7 10.4 96 253-351 91-189 (304)
177 PF13371 TPR_9: Tetratricopept 97.2 0.0013 2.7E-08 47.8 6.5 58 318-375 2-59 (73)
178 COG4235 Cytochrome c biogenesi 97.2 0.0067 1.5E-07 55.7 12.3 103 276-378 152-260 (287)
179 KOG0550 Molecular chaperone (D 97.2 0.017 3.6E-07 55.1 15.0 159 216-378 177-354 (486)
180 PF10037 MRP-S27: Mitochondria 97.2 0.0067 1.4E-07 59.6 13.1 119 72-190 62-186 (429)
181 PF13432 TPR_16: Tetratricopep 97.2 0.0016 3.4E-08 46.1 6.5 61 285-345 3-65 (65)
182 KOG1130 Predicted G-alpha GTPa 97.2 0.0046 1E-07 58.6 11.1 256 116-372 26-342 (639)
183 PF10037 MRP-S27: Mitochondria 97.1 0.0044 9.6E-08 60.9 11.3 118 38-155 63-186 (429)
184 PRK15363 pathogenicity island 97.1 0.019 4E-07 47.9 13.0 95 106-203 34-129 (157)
185 COG4700 Uncharacterized protei 97.1 0.012 2.5E-07 49.9 11.7 100 274-373 84-188 (251)
186 KOG2280 Vacuolar assembly/sort 97.1 0.23 5E-06 51.2 22.4 106 183-304 690-795 (829)
187 KOG2796 Uncharacterized conser 97.0 0.037 8E-07 49.6 14.8 167 79-247 139-323 (366)
188 PRK10866 outer membrane biogen 97.0 0.062 1.3E-06 49.3 17.2 174 183-373 38-240 (243)
189 PF14938 SNAP: Soluble NSF att 97.0 0.087 1.9E-06 49.8 18.8 89 216-305 122-222 (282)
190 CHL00033 ycf3 photosystem I as 97.0 0.021 4.5E-07 49.3 13.0 80 108-188 36-117 (168)
191 PF13431 TPR_17: Tetratricopep 97.0 0.00059 1.3E-08 40.9 2.3 33 334-366 2-34 (34)
192 PF13281 DUF4071: Domain of un 97.0 0.093 2E-06 50.7 18.2 161 182-345 146-339 (374)
193 PF12688 TPR_5: Tetratrico pep 97.0 0.037 7.9E-07 44.4 13.1 91 214-304 7-100 (120)
194 KOG0553 TPR repeat-containing 97.0 0.0031 6.8E-08 57.5 7.6 86 288-373 90-177 (304)
195 PF13414 TPR_11: TPR repeat; P 96.9 0.0035 7.6E-08 44.8 6.5 64 279-342 3-69 (69)
196 PF14559 TPR_19: Tetratricopep 96.9 0.0018 3.9E-08 46.2 4.9 49 255-306 3-52 (68)
197 PRK10153 DNA-binding transcrip 96.9 0.076 1.6E-06 54.4 17.9 59 244-305 421-479 (517)
198 PF12688 TPR_5: Tetratrico pep 96.8 0.036 7.7E-07 44.4 12.1 90 113-203 7-101 (120)
199 PF14938 SNAP: Soluble NSF att 96.8 0.066 1.4E-06 50.6 16.1 117 212-343 98-228 (282)
200 KOG2041 WD40 repeat protein [G 96.7 0.25 5.4E-06 50.4 19.1 251 92-374 679-952 (1189)
201 PLN03098 LPA1 LOW PSII ACCUMUL 96.7 0.01 2.2E-07 58.0 9.1 63 311-373 75-140 (453)
202 PRK10803 tol-pal system protei 96.6 0.017 3.7E-07 53.5 9.9 92 282-373 146-245 (263)
203 PRK10866 outer membrane biogen 96.6 0.59 1.3E-05 42.9 21.9 64 106-171 31-98 (243)
204 KOG2796 Uncharacterized conser 96.6 0.19 4.1E-06 45.3 15.5 229 107-343 69-318 (366)
205 PF13428 TPR_14: Tetratricopep 96.5 0.0055 1.2E-07 39.3 4.5 42 312-353 2-43 (44)
206 PRK10803 tol-pal system protei 96.5 0.048 1E-06 50.5 12.3 101 245-345 145-251 (263)
207 COG3898 Uncharacterized membra 96.5 0.84 1.8E-05 43.7 26.0 282 79-373 85-391 (531)
208 COG4700 Uncharacterized protei 96.4 0.54 1.2E-05 40.2 16.6 99 139-237 86-189 (251)
209 KOG3941 Intermediate in Toll s 96.3 0.036 7.9E-07 50.2 9.5 102 194-296 51-175 (406)
210 KOG2280 Vacuolar assembly/sort 96.3 1.8 3.9E-05 45.0 28.0 327 10-370 441-795 (829)
211 KOG2053 Mitochondrial inherita 96.2 2.1 4.6E-05 45.4 33.4 219 15-238 18-256 (932)
212 PF13525 YfiO: Outer membrane 96.2 0.35 7.6E-06 43.1 15.8 50 317-366 147-199 (203)
213 PF13371 TPR_9: Tetratricopept 96.2 0.023 4.9E-07 41.0 6.8 62 287-348 3-66 (73)
214 PF12921 ATP13: Mitochondrial 96.2 0.075 1.6E-06 43.0 10.3 51 238-288 47-97 (126)
215 KOG2041 WD40 repeat protein [G 96.2 1.9 4.1E-05 44.4 26.1 55 173-232 848-902 (1189)
216 PF13424 TPR_12: Tetratricopep 96.1 0.012 2.7E-07 43.2 5.0 61 312-372 6-73 (78)
217 KOG1538 Uncharacterized conser 96.1 0.35 7.7E-06 49.0 16.1 176 9-205 601-801 (1081)
218 KOG1130 Predicted G-alpha GTPa 96.1 0.047 1E-06 52.0 9.6 254 15-269 26-341 (639)
219 PF09205 DUF1955: Domain of un 95.9 0.71 1.5E-05 37.0 14.4 140 219-377 13-152 (161)
220 KOG0550 Molecular chaperone (D 95.9 1.9 4E-05 41.7 21.2 160 140-305 166-347 (486)
221 PF12921 ATP13: Mitochondrial 95.8 0.14 2.9E-06 41.5 10.1 63 242-304 1-77 (126)
222 PF13424 TPR_12: Tetratricopep 95.7 0.026 5.6E-07 41.4 5.2 59 281-339 7-74 (78)
223 COG3898 Uncharacterized membra 95.7 2.1 4.6E-05 41.0 27.2 285 9-306 85-390 (531)
224 PF13525 YfiO: Outer membrane 95.5 1.7 3.6E-05 38.7 20.3 59 113-171 11-71 (203)
225 COG4235 Cytochrome c biogenesi 95.5 0.33 7.2E-06 44.8 12.5 98 139-237 153-256 (287)
226 KOG0543 FKBP-type peptidyl-pro 95.5 0.17 3.8E-06 48.5 11.0 64 311-374 257-320 (397)
227 PF04053 Coatomer_WDAD: Coatom 95.4 0.92 2E-05 45.5 16.5 157 16-203 271-428 (443)
228 PF04053 Coatomer_WDAD: Coatom 95.2 0.53 1.1E-05 47.2 14.1 132 218-375 271-403 (443)
229 KOG0543 FKBP-type peptidyl-pro 95.2 0.3 6.5E-06 46.9 11.6 95 280-374 258-355 (397)
230 PLN03098 LPA1 LOW PSII ACCUMUL 95.0 1.2 2.7E-05 43.8 15.4 64 174-237 72-141 (453)
231 PF03704 BTAD: Bacterial trans 94.9 0.12 2.7E-06 43.2 7.7 57 10-67 66-122 (146)
232 COG3118 Thioredoxin domain-con 94.9 3.3 7.1E-05 38.4 17.0 141 217-359 143-286 (304)
233 KOG1585 Protein required for f 94.8 2.9 6.2E-05 37.6 16.8 200 145-369 34-251 (308)
234 COG0457 NrfG FOG: TPR repeat [ 94.7 2.9 6.2E-05 37.0 27.8 194 177-374 59-265 (291)
235 KOG3941 Intermediate in Toll s 94.6 0.33 7.1E-06 44.2 9.7 112 92-203 50-185 (406)
236 smart00299 CLH Clathrin heavy 94.6 2.1 4.7E-05 35.3 14.7 83 46-132 12-94 (140)
237 PF13281 DUF4071: Domain of un 94.6 4.1 9E-05 39.6 17.7 30 242-271 304-333 (374)
238 COG5107 RNA14 Pre-mRNA 3'-end 94.5 5.2 0.00011 39.3 27.3 128 244-373 398-530 (660)
239 COG1729 Uncharacterized protei 94.5 0.36 7.7E-06 44.0 9.6 95 211-306 145-242 (262)
240 KOG1941 Acetylcholine receptor 94.4 0.83 1.8E-05 43.2 12.0 44 118-161 17-62 (518)
241 PF04184 ST7: ST7 protein; In 94.4 1.2 2.6E-05 44.2 13.6 68 314-381 262-331 (539)
242 PF10300 DUF3808: Protein of u 94.3 4.2 9.1E-05 41.4 18.1 161 211-374 191-376 (468)
243 PF00515 TPR_1: Tetratricopept 94.2 0.1 2.2E-06 30.9 4.0 32 312-343 2-33 (34)
244 KOG4555 TPR repeat-containing 94.2 0.61 1.3E-05 37.3 9.1 89 288-376 52-146 (175)
245 PF07719 TPR_2: Tetratricopept 94.0 0.16 3.6E-06 29.9 4.7 33 312-344 2-34 (34)
246 smart00299 CLH Clathrin heavy 94.0 3 6.4E-05 34.4 15.0 39 183-221 13-54 (140)
247 PRK11906 transcriptional regul 94.0 1.1 2.3E-05 44.4 12.4 78 295-372 320-399 (458)
248 KOG1920 IkappaB kinase complex 93.9 13 0.00027 41.3 22.5 82 249-337 971-1052(1265)
249 COG5107 RNA14 Pre-mRNA 3'-end 93.8 2.1 4.4E-05 41.9 13.6 145 41-189 397-547 (660)
250 PF13512 TPR_18: Tetratricopep 93.8 2.9 6.4E-05 34.4 12.8 61 217-277 19-81 (142)
251 PF13170 DUF4003: Protein of u 93.7 2.9 6.4E-05 39.5 14.6 134 123-287 78-225 (297)
252 PF04184 ST7: ST7 protein; In 93.6 5.4 0.00012 39.8 16.4 98 247-344 263-379 (539)
253 PRK09687 putative lyase; Provi 93.4 6.9 0.00015 36.8 26.8 235 73-320 34-276 (280)
254 PRK11906 transcriptional regul 93.4 8.7 0.00019 38.2 17.6 174 191-369 232-431 (458)
255 COG4105 ComL DNA uptake lipopr 93.3 6.3 0.00014 35.9 18.7 143 208-374 34-196 (254)
256 PRK15331 chaperone protein Sic 93.0 1.2 2.6E-05 37.5 9.6 18 118-135 48-65 (165)
257 COG3629 DnrI DNA-binding trans 92.8 0.62 1.3E-05 43.2 8.4 62 312-373 154-215 (280)
258 PF02259 FAT: FAT domain; Int 92.8 10 0.00022 36.9 20.3 150 205-357 143-304 (352)
259 KOG1258 mRNA processing protei 92.7 13 0.00029 37.9 31.1 178 177-359 297-489 (577)
260 KOG2610 Uncharacterized conser 92.3 5.1 0.00011 37.7 13.4 112 190-305 116-235 (491)
261 PF09205 DUF1955: Domain of un 92.2 5.1 0.00011 32.4 11.5 65 108-173 87-151 (161)
262 PF07079 DUF1347: Protein of u 92.0 14 0.0003 36.6 26.5 198 143-349 299-529 (549)
263 COG1729 Uncharacterized protei 91.9 3.9 8.3E-05 37.5 12.1 101 245-346 144-250 (262)
264 COG4105 ComL DNA uptake lipopr 91.7 10 0.00022 34.5 21.2 179 175-374 33-233 (254)
265 COG3118 Thioredoxin domain-con 91.5 12 0.00026 34.9 18.0 116 150-269 142-262 (304)
266 PF13170 DUF4003: Protein of u 91.4 4.6 9.9E-05 38.2 12.7 126 57-184 78-224 (297)
267 PF07079 DUF1347: Protein of u 91.4 16 0.00034 36.1 29.4 343 17-371 90-521 (549)
268 PF13512 TPR_18: Tetratricopep 91.3 6.5 0.00014 32.4 11.8 57 289-345 20-81 (142)
269 KOG2114 Vacuolar assembly/sort 90.9 13 0.00028 39.5 16.0 141 184-336 375-515 (933)
270 COG3629 DnrI DNA-binding trans 90.9 2.1 4.5E-05 39.8 9.6 76 177-252 153-236 (280)
271 COG4785 NlpI Lipoprotein NlpI, 90.9 11 0.00024 33.4 14.5 161 208-376 99-268 (297)
272 KOG1585 Protein required for f 90.8 12 0.00026 33.8 16.7 201 43-267 33-251 (308)
273 KOG4555 TPR repeat-containing 90.8 3.2 6.8E-05 33.4 9.0 87 50-137 52-145 (175)
274 PF07035 Mic1: Colon cancer-as 90.6 9.8 0.00021 32.4 13.0 134 26-171 14-149 (167)
275 COG4649 Uncharacterized protei 90.5 3.5 7.5E-05 35.0 9.5 48 189-236 144-195 (221)
276 PF13181 TPR_8: Tetratricopept 90.4 0.59 1.3E-05 27.5 3.9 31 313-343 3-33 (34)
277 COG0457 NrfG FOG: TPR repeat [ 90.3 12 0.00026 32.8 27.0 197 143-343 60-268 (291)
278 PRK11619 lytic murein transgly 90.1 29 0.00063 36.9 32.4 80 77-158 100-179 (644)
279 PF13176 TPR_7: Tetratricopept 89.9 0.56 1.2E-05 28.2 3.5 26 347-372 1-26 (36)
280 PF10300 DUF3808: Protein of u 89.7 26 0.00056 35.8 24.2 160 44-204 191-374 (468)
281 PF13176 TPR_7: Tetratricopept 89.6 0.65 1.4E-05 28.0 3.6 28 313-340 1-28 (36)
282 PF09613 HrpB1_HrpK: Bacterial 89.3 2 4.3E-05 36.1 7.4 53 322-374 21-73 (160)
283 KOG0276 Vesicle coat complex C 89.3 7.6 0.00016 39.6 12.4 148 189-370 598-746 (794)
284 PRK09687 putative lyase; Provi 89.1 20 0.00043 33.7 27.3 231 38-289 34-277 (280)
285 PF10602 RPN7: 26S proteasome 89.0 12 0.00027 32.3 12.5 57 179-235 38-100 (177)
286 TIGR02508 type_III_yscG type I 88.6 9.2 0.0002 29.2 9.7 87 57-147 21-107 (115)
287 PRK12798 chemotaxis protein; R 88.3 27 0.00059 34.3 21.6 182 190-374 125-324 (421)
288 TIGR02561 HrpB1_HrpK type III 88.2 3.4 7.4E-05 34.1 7.8 53 323-375 22-74 (153)
289 KOG2066 Vacuolar assembly/sort 88.1 39 0.00085 35.9 24.7 90 225-326 611-705 (846)
290 TIGR02508 type_III_yscG type I 88.1 9 0.00019 29.2 9.2 87 158-248 21-107 (115)
291 PF10602 RPN7: 26S proteasome 87.9 7.6 0.00016 33.6 10.5 61 8-68 38-100 (177)
292 PF08631 SPO22: Meiosis protei 87.9 24 0.00052 33.1 25.9 16 321-336 256-271 (278)
293 PF13428 TPR_14: Tetratricopep 87.9 1.9 4.2E-05 27.2 5.1 28 8-35 3-30 (44)
294 PF13431 TPR_17: Tetratricopep 87.6 0.84 1.8E-05 27.1 3.1 31 65-96 3-33 (34)
295 KOG4570 Uncharacterized conser 87.4 5.5 0.00012 37.2 9.4 98 171-272 58-164 (418)
296 cd00923 Cyt_c_Oxidase_Va Cytoc 87.3 5 0.00011 30.3 7.5 63 223-287 22-84 (103)
297 KOG4234 TPR repeat-containing 87.1 2.9 6.4E-05 36.3 7.1 87 289-375 105-198 (271)
298 PF04097 Nic96: Nup93/Nic96; 87.1 45 0.00097 35.4 21.3 69 7-77 113-188 (613)
299 KOG4279 Serine/threonine prote 86.9 11 0.00025 39.4 12.2 186 108-347 202-402 (1226)
300 PF02259 FAT: FAT domain; Int 86.8 31 0.00068 33.4 16.7 69 309-377 144-216 (352)
301 KOG4570 Uncharacterized conser 86.7 5.7 0.00012 37.1 9.1 99 70-172 58-165 (418)
302 PF02284 COX5A: Cytochrome c o 86.6 5.8 0.00012 30.4 7.6 63 224-288 26-88 (108)
303 PF00515 TPR_1: Tetratricopept 86.2 1.7 3.7E-05 25.4 4.0 27 210-236 3-29 (34)
304 PF09613 HrpB1_HrpK: Bacterial 86.0 20 0.00043 30.2 12.7 88 252-342 19-108 (160)
305 PF07035 Mic1: Colon cancer-as 85.8 21 0.00046 30.4 13.0 131 128-269 15-146 (167)
306 KOG0890 Protein kinase of the 85.6 95 0.0021 37.7 24.1 309 50-376 1392-1733(2382)
307 PRK13800 putative oxidoreducta 85.4 68 0.0015 35.9 25.2 254 97-372 625-879 (897)
308 KOG1920 IkappaB kinase complex 84.2 77 0.0017 35.6 21.7 174 113-306 857-1053(1265)
309 COG3947 Response regulator con 84.0 37 0.0008 31.7 15.7 58 316-373 284-341 (361)
310 PF00637 Clathrin: Region in C 83.9 0.53 1.1E-05 39.1 1.2 54 148-201 13-66 (143)
311 KOG2610 Uncharacterized conser 83.5 42 0.00091 32.0 16.6 150 119-269 115-273 (491)
312 PRK15180 Vi polysaccharide bio 83.5 6.4 0.00014 38.9 8.3 122 218-343 299-423 (831)
313 PF00637 Clathrin: Region in C 83.4 0.57 1.2E-05 38.9 1.3 84 47-133 13-96 (143)
314 PF11207 DUF2989: Protein of u 82.4 13 0.00028 32.6 9.0 67 59-126 124-197 (203)
315 PF13174 TPR_6: Tetratricopept 82.3 3.2 6.9E-05 23.9 4.0 27 317-343 6-32 (33)
316 PF13374 TPR_10: Tetratricopep 82.1 2.4 5.3E-05 26.0 3.6 28 346-373 3-30 (42)
317 PF11207 DUF2989: Protein of u 81.8 13 0.00028 32.6 8.9 72 124-196 123-197 (203)
318 PF09477 Type_III_YscG: Bacter 81.6 23 0.00049 27.5 9.6 89 54-146 19-107 (116)
319 KOG1464 COP9 signalosome, subu 81.4 44 0.00096 30.7 13.4 218 111-334 69-326 (440)
320 PF02284 COX5A: Cytochrome c o 81.3 11 0.00024 28.8 7.2 48 305-352 39-86 (108)
321 PF07721 TPR_4: Tetratricopept 81.2 2.3 5.1E-05 23.3 2.8 23 347-369 3-25 (26)
322 cd00923 Cyt_c_Oxidase_Va Cytoc 81.1 11 0.00023 28.7 6.9 47 305-351 36-82 (103)
323 PHA02875 ankyrin repeat protei 80.8 64 0.0014 32.2 15.9 209 14-243 7-230 (413)
324 PF13374 TPR_10: Tetratricopep 80.7 4 8.7E-05 25.0 4.3 28 209-236 3-30 (42)
325 PF07719 TPR_2: Tetratricopept 80.1 3.5 7.5E-05 23.9 3.6 28 346-373 2-29 (34)
326 PF08631 SPO22: Meiosis protei 79.5 55 0.0012 30.7 25.2 20 352-371 253-272 (278)
327 smart00028 TPR Tetratricopepti 78.3 5.2 0.00011 22.0 4.1 29 314-342 4-32 (34)
328 PF06552 TOM20_plant: Plant sp 78.0 28 0.00061 30.0 9.5 45 327-371 51-99 (186)
329 KOG4648 Uncharacterized conser 77.2 9.7 0.00021 36.1 7.0 25 320-344 174-198 (536)
330 TIGR02561 HrpB1_HrpK type III 77.1 41 0.0009 28.0 11.1 18 86-103 54-71 (153)
331 PF09477 Type_III_YscG: Bacter 77.0 32 0.0007 26.7 9.2 87 156-246 20-106 (116)
332 KOG0276 Vesicle coat complex C 76.9 26 0.00057 35.9 10.3 76 79-168 617-692 (794)
333 PF13181 TPR_8: Tetratricopept 75.8 6.5 0.00014 22.8 3.9 28 346-373 2-29 (34)
334 PF14853 Fis1_TPR_C: Fis1 C-te 75.8 4.9 0.00011 26.7 3.6 31 315-345 5-35 (53)
335 KOG2114 Vacuolar assembly/sort 75.7 1.2E+02 0.0027 32.7 25.7 173 12-206 340-519 (933)
336 COG4455 ImpE Protein of avirul 75.4 13 0.00028 32.9 6.9 72 282-353 4-80 (273)
337 PRK10941 hypothetical protein; 75.3 17 0.00036 33.9 8.2 61 314-374 184-244 (269)
338 PF13762 MNE1: Mitochondrial s 75.2 38 0.00082 28.1 9.3 76 80-155 43-128 (145)
339 PF13174 TPR_6: Tetratricopept 75.1 3.8 8.3E-05 23.5 2.8 28 347-374 2-29 (33)
340 PF14853 Fis1_TPR_C: Fis1 C-te 74.7 22 0.00048 23.6 6.7 27 348-374 4-30 (53)
341 KOG2066 Vacuolar assembly/sort 74.2 1.3E+02 0.0028 32.3 24.3 128 76-209 392-537 (846)
342 KOG3364 Membrane protein invol 73.8 28 0.0006 28.4 7.9 48 326-373 50-99 (149)
343 KOG4648 Uncharacterized conser 73.8 8.1 0.00018 36.5 5.7 46 252-300 106-152 (536)
344 TIGR03504 FimV_Cterm FimV C-te 71.3 7.4 0.00016 24.7 3.4 26 350-375 4-29 (44)
345 PF04097 Nic96: Nup93/Nic96; 71.2 1.1E+02 0.0024 32.6 14.1 86 216-306 266-354 (613)
346 COG3947 Response regulator con 70.9 93 0.002 29.2 13.1 64 181-244 283-354 (361)
347 PF10345 Cohesin_load: Cohesin 70.7 1.5E+02 0.0033 31.5 25.7 189 5-203 29-251 (608)
348 KOG2063 Vacuolar assembly/sort 70.7 1.7E+02 0.0038 32.2 16.2 39 115-153 599-637 (877)
349 PRK11619 lytic murein transgly 69.7 1.6E+02 0.0035 31.5 33.2 95 286-380 414-511 (644)
350 KOG1498 26S proteasome regulat 69.1 1.2E+02 0.0026 29.7 14.8 100 284-387 136-254 (439)
351 KOG1586 Protein required for f 68.8 91 0.002 28.2 14.1 56 288-343 163-227 (288)
352 PF07163 Pex26: Pex26 protein; 68.7 55 0.0012 30.4 9.5 87 215-304 90-183 (309)
353 PF10366 Vps39_1: Vacuolar sor 68.7 46 0.001 26.0 8.2 27 109-135 41-67 (108)
354 KOG4077 Cytochrome c oxidase, 68.5 37 0.00081 27.2 7.3 60 226-287 67-126 (149)
355 PF11768 DUF3312: Protein of u 68.3 73 0.0016 32.6 11.3 56 181-236 412-472 (545)
356 PF13762 MNE1: Mitochondrial s 68.1 69 0.0015 26.6 11.7 77 180-256 42-128 (145)
357 PF14561 TPR_20: Tetratricopep 67.6 16 0.00034 27.5 5.2 44 332-375 9-52 (90)
358 PF09670 Cas_Cas02710: CRISPR- 67.5 1.1E+02 0.0024 30.3 12.5 53 218-271 141-197 (379)
359 KOG1308 Hsp70-interacting prot 67.1 4 8.8E-05 38.6 2.2 90 291-380 126-217 (377)
360 KOG1550 Extracellular protein 66.6 1.7E+02 0.0037 30.6 20.3 171 93-269 229-423 (552)
361 cd08819 CARD_MDA5_2 Caspase ac 66.6 45 0.00098 24.8 7.1 66 161-228 21-86 (88)
362 KOG2063 Vacuolar assembly/sort 66.1 1.5E+02 0.0033 32.6 13.8 28 109-136 506-533 (877)
363 PF10366 Vps39_1: Vacuolar sor 65.5 54 0.0012 25.7 8.0 27 210-236 41-67 (108)
364 PHA02875 ankyrin repeat protei 64.4 96 0.0021 30.9 11.9 194 53-263 11-219 (413)
365 KOG1550 Extracellular protein 64.2 1.9E+02 0.0041 30.3 17.1 181 193-379 228-431 (552)
366 PF14669 Asp_Glu_race_2: Putat 63.5 1E+02 0.0022 26.9 12.5 59 146-204 136-208 (233)
367 KOG1586 Protein required for f 63.2 1.2E+02 0.0026 27.5 14.1 23 322-344 165-187 (288)
368 smart00386 HAT HAT (Half-A-TPR 63.0 15 0.00032 20.7 3.5 29 325-353 1-29 (33)
369 PRK15180 Vi polysaccharide bio 62.6 77 0.0017 31.8 9.9 127 255-386 301-430 (831)
370 PF10579 Rapsyn_N: Rapsyn N-te 62.3 25 0.00055 25.6 5.0 45 323-367 18-65 (80)
371 KOG1258 mRNA processing protei 62.3 2E+02 0.0043 29.8 18.0 121 76-197 297-420 (577)
372 KOG4234 TPR repeat-containing 62.1 59 0.0013 28.6 8.0 57 115-172 103-164 (271)
373 COG1747 Uncharacterized N-term 61.5 1.9E+02 0.0042 29.5 20.8 159 106-271 65-233 (711)
374 PRK13342 recombination factor 61.1 1.8E+02 0.004 29.1 15.0 44 109-152 229-275 (413)
375 PF07163 Pex26: Pex26 protein; 60.9 87 0.0019 29.1 9.3 84 47-130 89-181 (309)
376 KOG0890 Protein kinase of the 60.2 4.1E+02 0.0089 32.8 25.1 149 11-166 1388-1542(2382)
377 KOG0292 Vesicle coat complex C 59.9 11 0.00023 40.3 3.9 77 249-341 626-702 (1202)
378 COG5159 RPN6 26S proteasome re 59.5 1.5E+02 0.0033 27.6 13.9 230 1-244 1-262 (421)
379 PF10579 Rapsyn_N: Rapsyn N-te 59.5 29 0.00063 25.3 4.9 47 255-301 18-65 (80)
380 COG4455 ImpE Protein of avirul 59.4 72 0.0016 28.5 8.2 53 11-64 6-58 (273)
381 TIGR03504 FimV_Cterm FimV C-te 59.2 24 0.00051 22.4 4.0 22 114-135 6-27 (44)
382 COG1747 Uncharacterized N-term 58.9 2.2E+02 0.0047 29.2 23.4 158 181-345 70-239 (711)
383 PF11663 Toxin_YhaV: Toxin wit 58.3 13 0.00028 30.2 3.3 31 19-51 108-138 (140)
384 PF11838 ERAP1_C: ERAP1-like C 58.1 1.7E+02 0.0038 27.8 17.9 84 258-341 145-231 (324)
385 KOG2396 HAT (Half-A-TPR) repea 57.6 2.2E+02 0.0048 28.9 29.5 73 5-79 104-177 (568)
386 COG4649 Uncharacterized protei 57.2 1.3E+02 0.0028 26.0 14.4 86 187-272 104-196 (221)
387 PF08311 Mad3_BUB1_I: Mad3/BUB 56.8 94 0.002 25.1 8.2 42 329-370 81-124 (126)
388 PF11846 DUF3366: Domain of un 56.0 50 0.0011 28.9 7.2 35 308-342 141-175 (193)
389 PF10345 Cohesin_load: Cohesin 55.8 2.8E+02 0.0061 29.5 26.5 48 322-369 372-428 (608)
390 KOG1941 Acetylcholine receptor 55.4 2.1E+02 0.0045 27.9 19.5 124 146-269 126-272 (518)
391 PF04190 DUF410: Protein of un 54.5 1.8E+02 0.0039 26.9 16.0 81 278-374 89-170 (260)
392 cd08819 CARD_MDA5_2 Caspase ac 53.8 81 0.0017 23.5 6.5 66 60-127 21-86 (88)
393 KOG3824 Huntingtin interacting 53.3 44 0.00095 31.4 6.2 48 322-369 127-174 (472)
394 PF11663 Toxin_YhaV: Toxin wit 52.0 16 0.00035 29.6 3.0 32 220-253 107-138 (140)
395 KOG2659 LisH motif-containing 50.9 1.5E+02 0.0033 26.6 9.1 92 210-304 28-128 (228)
396 PF14689 SPOB_a: Sensor_kinase 49.9 27 0.00059 24.1 3.5 23 213-235 28-50 (62)
397 PF04910 Tcf25: Transcriptiona 49.7 2.6E+02 0.0057 27.4 15.4 64 310-373 99-167 (360)
398 PF06552 TOM20_plant: Plant sp 49.6 1.5E+02 0.0033 25.6 8.5 29 226-256 53-82 (186)
399 PHA03100 ankyrin repeat protei 49.5 3E+02 0.0065 28.0 13.8 16 361-376 364-379 (480)
400 TIGR02270 conserved hypothetic 49.3 2.9E+02 0.0062 27.7 25.9 194 95-308 88-281 (410)
401 PF11846 DUF3366: Domain of un 48.7 74 0.0016 27.8 7.1 51 255-305 120-170 (193)
402 PF13929 mRNA_stabil: mRNA sta 48.6 2.4E+02 0.0051 26.5 14.9 54 174-227 199-257 (292)
403 PF14863 Alkyl_sulf_dimr: Alky 48.5 1.2E+02 0.0025 25.2 7.6 63 296-361 58-120 (141)
404 COG2976 Uncharacterized protei 48.4 1.9E+02 0.0042 25.4 15.2 89 150-238 97-189 (207)
405 PF11848 DUF3368: Domain of un 48.3 73 0.0016 20.6 5.2 33 118-150 13-45 (48)
406 COG2976 Uncharacterized protei 48.1 1.9E+02 0.0042 25.4 13.9 87 84-172 97-189 (207)
407 PF12968 DUF3856: Domain of Un 47.9 1.4E+02 0.0031 23.8 8.2 61 311-371 55-126 (144)
408 PF11838 ERAP1_C: ERAP1-like C 47.4 2.6E+02 0.0056 26.6 18.6 80 158-237 146-230 (324)
409 PF04190 DUF410: Protein of un 47.3 2.4E+02 0.0051 26.2 18.1 83 175-272 88-170 (260)
410 PF11848 DUF3368: Domain of un 47.3 66 0.0014 20.8 4.8 31 18-48 14-44 (48)
411 PRK10564 maltose regulon perip 46.4 39 0.00085 31.7 4.9 44 105-148 254-298 (303)
412 KOG4642 Chaperone-dependent E3 46.3 84 0.0018 28.5 6.7 66 307-372 39-105 (284)
413 KOG0545 Aryl-hydrocarbon recep 46.3 1.6E+02 0.0035 26.9 8.5 56 319-374 238-293 (329)
414 cd08326 CARD_CASP9 Caspase act 45.9 1.1E+02 0.0024 22.6 6.4 62 162-227 19-80 (84)
415 PRK10564 maltose regulon perip 45.9 42 0.0009 31.5 5.0 41 210-250 259-299 (303)
416 PF07720 TPR_3: Tetratricopept 45.8 66 0.0014 19.3 4.6 29 314-342 4-34 (36)
417 COG4785 NlpI Lipoprotein NlpI, 45.8 2.3E+02 0.0049 25.5 16.6 157 108-271 100-265 (297)
418 KOG4507 Uncharacterized conser 45.5 72 0.0016 32.9 6.9 70 284-353 647-718 (886)
419 COG2909 MalT ATP-dependent tra 44.6 4.7E+02 0.01 28.8 24.4 217 87-304 426-684 (894)
420 PF12862 Apc5: Anaphase-promot 44.4 82 0.0018 23.7 5.8 52 322-373 9-69 (94)
421 KOG3364 Membrane protein invol 44.3 1.6E+02 0.0035 24.2 7.4 33 313-345 73-105 (149)
422 PF15469 Sec5: Exocyst complex 43.8 2.1E+02 0.0046 24.6 11.5 23 248-270 91-113 (182)
423 PF07575 Nucleopor_Nup85: Nup8 43.2 2.1E+02 0.0045 30.2 10.4 91 108-202 373-463 (566)
424 KOG4077 Cytochrome c oxidase, 43.1 1.6E+02 0.0035 23.8 7.1 46 126-171 68-113 (149)
425 cd00280 TRFH Telomeric Repeat 43.0 1.3E+02 0.0028 26.1 7.1 28 287-314 119-146 (200)
426 PF13934 ELYS: Nuclear pore co 41.3 2.7E+02 0.0059 25.1 17.5 107 210-325 78-186 (226)
427 PF14689 SPOB_a: Sensor_kinase 40.7 43 0.00094 23.0 3.4 27 109-135 25-51 (62)
428 COG5108 RPO41 Mitochondrial DN 40.5 1.8E+02 0.0039 30.7 8.8 47 213-259 33-81 (1117)
429 TIGR01503 MthylAspMut_E methyl 40.3 2.1E+02 0.0046 28.8 9.0 106 157-269 69-195 (480)
430 PF09986 DUF2225: Uncharacteri 40.0 2.4E+02 0.0053 25.2 9.0 63 313-375 120-195 (214)
431 PF11768 DUF3312: Protein of u 39.2 2E+02 0.0044 29.6 9.0 56 80-135 412-472 (545)
432 KOG2422 Uncharacterized conser 37.2 5E+02 0.011 27.1 12.4 53 319-371 350-404 (665)
433 COG4976 Predicted methyltransf 37.1 72 0.0016 28.7 4.9 55 290-344 6-62 (287)
434 PRK11639 zinc uptake transcrip 36.5 1.6E+02 0.0035 25.1 7.0 60 235-296 18-77 (169)
435 TIGR02328 conserved hypothetic 36.4 26 0.00057 27.2 1.9 25 406-430 49-73 (120)
436 cd08332 CARD_CASP2 Caspase act 36.3 1.8E+02 0.0038 21.9 6.3 36 189-224 46-81 (90)
437 PRK13342 recombination factor 36.1 4.6E+02 0.0099 26.2 15.5 44 210-253 229-275 (413)
438 PF13934 ELYS: Nuclear pore co 35.9 3.3E+02 0.0072 24.6 11.5 93 189-291 90-184 (226)
439 KOG0376 Serine-threonine phosp 35.8 32 0.00068 34.4 2.8 94 250-346 11-107 (476)
440 KOG4567 GTPase-activating prot 35.7 4E+02 0.0086 25.4 10.1 42 229-270 264-305 (370)
441 PF11525 CopK: Copper resistan 35.4 14 0.00031 25.7 0.3 21 490-510 8-28 (73)
442 PF10255 Paf67: RNA polymerase 35.3 2.6E+02 0.0056 27.9 8.9 57 316-372 127-191 (404)
443 COG0735 Fur Fe2+/Zn2+ uptake r 35.3 2.3E+02 0.0049 23.5 7.5 20 251-270 28-47 (145)
444 PF12069 DUF3549: Protein of u 34.9 4.3E+02 0.0093 25.6 12.4 89 81-172 171-260 (340)
445 PF02847 MA3: MA3 domain; Int 34.7 1.1E+02 0.0025 23.7 5.5 22 112-133 7-28 (113)
446 PF15161 Neuropep_like: Neurop 34.5 21 0.00045 23.6 0.9 16 471-487 13-28 (65)
447 KOG0403 Neoplastic transformat 34.1 5E+02 0.011 26.1 19.5 59 282-340 512-572 (645)
448 PF08967 DUF1884: Domain of un 34.0 41 0.00089 24.5 2.4 26 405-430 8-33 (85)
449 PF05119 Terminase_4: Phage te 33.8 1.3E+02 0.0028 22.8 5.6 34 398-431 57-90 (100)
450 PF10255 Paf67: RNA polymerase 33.2 1.9E+02 0.0042 28.7 7.7 56 180-235 125-191 (404)
451 KOG0292 Vesicle coat complex C 33.2 6.3E+02 0.014 28.0 11.5 131 185-339 651-781 (1202)
452 cd08326 CARD_CASP9 Caspase act 33.0 1.8E+02 0.0038 21.6 5.8 61 62-126 20-80 (84)
453 COG5108 RPO41 Mitochondrial DN 32.7 2.1E+02 0.0047 30.1 8.0 73 46-118 33-114 (1117)
454 KOG4521 Nuclear pore complex, 32.5 8.2E+02 0.018 28.1 13.5 20 185-204 928-947 (1480)
455 COG2178 Predicted RNA-binding 32.4 2.4E+02 0.0053 24.7 7.2 51 186-236 38-97 (204)
456 PRK13800 putative oxidoreducta 31.4 8E+02 0.017 27.7 29.7 248 73-339 632-880 (897)
457 COG4003 Uncharacterized protei 31.3 65 0.0014 23.5 3.0 36 1-36 25-61 (98)
458 PF08311 Mad3_BUB1_I: Mad3/BUB 31.3 2.8E+02 0.0061 22.3 8.3 42 160-201 81-123 (126)
459 KOG1524 WD40 repeat-containing 31.1 2.7E+02 0.0059 28.5 8.2 89 278-369 572-668 (737)
460 PF14427 Pput2613-deam: Pput_2 30.8 2E+02 0.0044 22.4 5.7 57 441-497 45-101 (118)
461 COG0735 Fur Fe2+/Zn2+ uptake r 30.7 2.7E+02 0.0058 23.1 7.2 25 149-173 27-51 (145)
462 KOG3807 Predicted membrane pro 30.1 1.5E+02 0.0033 28.2 6.0 15 330-344 381-395 (556)
463 KOG0991 Replication factor C, 29.9 4.4E+02 0.0095 24.1 10.0 38 205-243 236-273 (333)
464 PRK10941 hypothetical protein; 29.8 4.7E+02 0.01 24.4 10.3 60 211-272 184-244 (269)
465 PF14561 TPR_20: Tetratricopep 29.7 2.4E+02 0.0052 21.1 8.5 62 310-371 21-85 (90)
466 KOG0551 Hsp90 co-chaperone CNS 29.7 2.6E+02 0.0056 26.9 7.4 91 281-371 83-179 (390)
467 smart00638 LPD_N Lipoprotein N 29.5 6.8E+02 0.015 26.3 25.2 59 76-136 310-369 (574)
468 KOG4814 Uncharacterized conser 29.5 7.1E+02 0.015 26.5 11.3 84 291-374 366-457 (872)
469 COG4976 Predicted methyltransf 29.2 1E+02 0.0022 27.8 4.5 55 321-375 5-59 (287)
470 PF13929 mRNA_stabil: mRNA sta 29.0 5E+02 0.011 24.5 15.6 72 265-336 188-263 (292)
471 PF12069 DUF3549: Protein of u 28.8 5.4E+02 0.012 24.9 13.0 87 182-271 171-258 (340)
472 PF11817 Foie-gras_1: Foie gra 28.8 2.2E+02 0.0048 26.1 7.1 19 315-333 222-240 (247)
473 PF14044 NETI: NETI protein 27.9 54 0.0012 22.0 2.0 17 411-427 10-26 (57)
474 PF09670 Cas_Cas02710: CRISPR- 27.9 6E+02 0.013 25.1 12.4 52 18-70 143-198 (379)
475 KOG3507 DNA-directed RNA polym 27.9 20 0.00044 24.0 0.1 12 471-482 20-31 (62)
476 PF02847 MA3: MA3 domain; Int 27.8 96 0.0021 24.1 4.0 61 10-72 6-68 (113)
477 TIGR02414 pepN_proteo aminopep 27.8 9E+02 0.02 27.1 14.9 153 211-367 675-836 (863)
478 PRK14962 DNA polymerase III su 27.8 6.8E+02 0.015 25.7 13.3 31 69-101 191-221 (472)
479 PF10475 DUF2450: Protein of u 26.9 3E+02 0.0064 26.0 7.8 52 82-135 104-155 (291)
480 PRK11639 zinc uptake transcrip 26.7 2.8E+02 0.006 23.7 6.8 38 156-193 39-76 (169)
481 KOG2297 Predicted translation 26.7 5.7E+02 0.012 24.4 14.6 76 69-156 159-237 (412)
482 cd07153 Fur_like Ferric uptake 26.6 1.5E+02 0.0033 23.2 4.9 45 12-56 6-50 (116)
483 COG5187 RPN7 26S proteasome re 26.6 4.3E+02 0.0093 24.9 8.1 97 274-372 110-219 (412)
484 cd07153 Fur_like Ferric uptake 26.5 1.6E+02 0.0035 22.9 5.1 46 214-259 6-51 (116)
485 PF04034 DUF367: Domain of unk 26.4 3.5E+02 0.0076 21.9 7.7 24 283-306 70-93 (127)
486 KOG4507 Uncharacterized conser 25.8 2.7E+02 0.0058 29.0 7.2 133 240-375 568-706 (886)
487 PF08225 Antimicrobial19: Pseu 25.8 39 0.00085 17.3 0.8 12 475-486 10-21 (23)
488 KOG3636 Uncharacterized conser 25.8 6.6E+02 0.014 25.2 9.5 83 136-219 177-271 (669)
489 smart00544 MA3 Domain in DAP-5 25.6 3.2E+02 0.0069 21.1 8.8 21 113-133 8-28 (113)
490 COG5191 Uncharacterized conser 25.4 1.5E+02 0.0033 28.0 5.1 75 278-352 106-183 (435)
491 PF02607 B12-binding_2: B12 bi 25.4 1.2E+02 0.0027 21.7 3.9 37 219-255 12-48 (79)
492 PF07575 Nucleopor_Nup85: Nup8 25.2 8.2E+02 0.018 25.7 17.8 129 241-387 403-535 (566)
493 PF06135 DUF965: Bacterial pro 24.2 96 0.0021 22.5 2.8 23 405-427 15-37 (79)
494 PF12862 Apc5: Anaphase-promot 24.1 3.1E+02 0.0068 20.5 7.9 17 254-270 52-68 (94)
495 PF02607 B12-binding_2: B12 bi 23.8 1.1E+02 0.0024 21.9 3.4 34 18-51 13-46 (79)
496 PF06957 COPI_C: Coatomer (COP 23.7 2.2E+02 0.0048 28.5 6.3 33 312-344 301-333 (422)
497 cd08323 CARD_APAF1 Caspase act 23.3 3.2E+02 0.0069 20.3 6.5 63 161-227 16-78 (86)
498 KOG2908 26S proteasome regulat 23.0 7E+02 0.015 24.2 9.3 87 178-264 76-178 (380)
499 PF04123 DUF373: Domain of unk 23.0 6.9E+02 0.015 24.3 9.3 78 328-433 28-107 (344)
500 COG2912 Uncharacterized conser 22.9 3E+02 0.0066 25.6 6.6 59 315-373 185-243 (269)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.3e-118 Score=950.46 Aligned_cols=514 Identities=39% Similarity=0.739 Sum_probs=510.0
Q ss_pred CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHH
Q 040365 1 MPVSDLVSWNTVIVGLARNGLYEEALNIVRQMGNVNLKPDSFTLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGS 80 (514)
Q Consensus 1 m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 80 (514)
|+.||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+.+.++|..+.+.|+.+|..++|
T Consensus 184 m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n 263 (697)
T PLN03081 184 MPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSC 263 (697)
T ss_pred CCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCHHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHH
Q 040365 81 SLINMYAKCARVEDSHRLFCLLPVKDAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHL 160 (514)
Q Consensus 81 ~li~~~~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 160 (514)
+||++|+++|++++|.++|++|+++|+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|++++
T Consensus 264 ~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~ 343 (697)
T PLN03081 264 ALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEH 343 (697)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 040365 161 GKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMDLHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVK 240 (514)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 240 (514)
|.++|..|.+.|++||..++|+|+++|+|+|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++|.+.|+.
T Consensus 344 a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~ 423 (697)
T PLN03081 344 AKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVA 423 (697)
T ss_pred HHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 040365 241 PNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISNMHAGPTENVWLTLLSA 320 (514)
Q Consensus 241 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~ 320 (514)
||.+||+.++.+|++.|++++|.++|+.|.+++|+.|+..+|++|+++|++.|++++|.+++++|+.+|+..+|++|+.+
T Consensus 424 Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a 503 (697)
T PLN03081 424 PNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTA 503 (697)
T ss_pred CCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999888899999999999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHhCCCccCCcccEEEECCEEEEEEeCCCC
Q 040365 321 CRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRNKGMKKTPACSWIEVKNKAYAFVAGDKS 400 (514)
Q Consensus 321 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~ 400 (514)
|+.+|+++.|..+++++.+++|++..+|+.|+++|++.|+|++|.++++.|+++|+++.||+||+++++.+|.|++||.+
T Consensus 504 ~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~ 583 (697)
T PLN03081 504 CRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRL 583 (697)
T ss_pred HHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhCCcccCCcccccccchHhHhhhHhhhHHHHHHHHccccCCCCCeEEEEecccccccchhh
Q 040365 401 HPFYHRINEALKELLERMEQEGYVPDTKEVLHDVEEEQKKNLLYYHSERLAIVFGIICTPDGTTIRIIKNLRVCGDCHTA 480 (514)
Q Consensus 401 ~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~h~e~la~~~~~~~~~~~~~~~i~~nl~~c~d~h~~ 480 (514)
||+.+++++.++++..+|++.||+||+..+++++++++|+..+.+||||||++|||+++|+|+||||+||||+|+|||+|
T Consensus 584 h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr~c~dch~~ 663 (697)
T PLN03081 584 HPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKV 663 (697)
T ss_pred CccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCCCCCeEEEecCCEECCCchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhcceeEEEecCCcccccCCcccCCCCCC
Q 040365 481 IKFISKIVQREIIVRDNSRFHHFEDGKCSCGDYW 514 (514)
Q Consensus 481 ~~~~s~~~~~~i~~rd~~~~h~f~~g~csc~~~w 514 (514)
+|+||++++|+|||||.+|||||+||+|||+|||
T Consensus 664 ~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 664 IKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred HHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 9999999999999999999999999999999999
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5.2e-113 Score=928.32 Aligned_cols=509 Identities=43% Similarity=0.797 Sum_probs=501.9
Q ss_pred CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHH
Q 040365 1 MPVSDLVSWNTVIVGLARNGLYEEALNIVRQMGNVNLKPDSFTLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGS 80 (514)
Q Consensus 1 m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 80 (514)
|+.||+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.++|+.+.+.|+.|+..++|
T Consensus 349 m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n 428 (857)
T PLN03077 349 METKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVAN 428 (857)
T ss_pred CCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCHHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHH
Q 040365 81 SLINMYAKCARVEDSHRLFCLLPVKDAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHL 160 (514)
Q Consensus 81 ~li~~~~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 160 (514)
+||++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++|.. +++||..||++++.+|++.|+++.
T Consensus 429 ~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~ 507 (857)
T PLN03077 429 ALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMC 507 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHH
Confidence 9999999999999999999999999999999999999999999999999999986 599999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 040365 161 GKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMDLHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVK 240 (514)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 240 (514)
++++|..+++.|+.+|..++|+||++|+|+|++++|.++|+.+ .+|+++||+||.+|+++|+.++|+++|++|.+.|+.
T Consensus 508 ~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~ 586 (857)
T PLN03077 508 GKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVN 586 (857)
T ss_pred hHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 040365 241 PNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISNMHAGPTENVWLTLLSA 320 (514)
Q Consensus 241 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~ 320 (514)
||.+||+.+|.+|++.|++++|.++|+.|.+++|+.|+..+|++|+++|++.|++++|.+++++|+.+||..+|++|+.+
T Consensus 587 Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~a 666 (857)
T PLN03077 587 PDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNA 666 (857)
T ss_pred CCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999878899999999999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHhCCCccCCcccEEEECCEEEEEEeCCCC
Q 040365 321 CRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRNKGMKKTPACSWIEVKNKAYAFVAGDKS 400 (514)
Q Consensus 321 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~ 400 (514)
|..+|+.+.|+.+.+++++++|+++..|..|+++|+..|+|++|.++++.|+++|++|+||+|||++++.+|.|++||.+
T Consensus 667 c~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~ 746 (857)
T PLN03077 667 CRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDES 746 (857)
T ss_pred HHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhCCcccCCcccccccchHhHhhhHhhhHHHHHHHHccccCCCCCeEEEEecccccccchhh
Q 040365 401 HPFYHRINEALKELLERMEQEGYVPDTKEVLHDVEEEQKKNLLYYHSERLAIVFGIICTPDGTTIRIIKNLRVCGDCHTA 480 (514)
Q Consensus 401 ~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~h~e~la~~~~~~~~~~~~~~~i~~nl~~c~d~h~~ 480 (514)
||+.++||..|++|..+|++.||+||+..++ ++++++|+..+++||||||++|||++||+|+||||+||||||+|||++
T Consensus 747 h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~ 825 (857)
T PLN03077 747 HPQIKEINTVLEGFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNT 825 (857)
T ss_pred CcchHHHHHHHHHHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHH
Confidence 9999999999999999999999999999888 557889999999999999999999999999999999999999999999
Q ss_pred hHHHhhhcceeEEEecCCcccccCCcccCCCC
Q 040365 481 IKFISKIVQREIIVRDNSRFHHFEDGKCSCGD 512 (514)
Q Consensus 481 ~~~~s~~~~~~i~~rd~~~~h~f~~g~csc~~ 512 (514)
+||||++++|||||||.+|||||+||+|||+|
T Consensus 826 ~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 826 VKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred HHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 99999999999999999999999999999998
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.2e-67 Score=573.43 Aligned_cols=481 Identities=24% Similarity=0.410 Sum_probs=432.3
Q ss_pred CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHH
Q 040365 1 MPVSDLVSWNTVIVGLARNGLYEEALNIVRQMGNVNLKPDSFTLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGS 80 (514)
Q Consensus 1 m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 80 (514)
|++||+++||+||.+|++.|++++|+++|++|...|+.||.+||++++++|+..+++..+.++|..+++.|+.||..++|
T Consensus 147 m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n 226 (857)
T PLN03077 147 MPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVN 226 (857)
T ss_pred CCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHh
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCHHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHH
Q 040365 81 SLINMYAKCARVEDSHRLFCLLPVKDAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHL 160 (514)
Q Consensus 81 ~li~~~~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 160 (514)
+||++|+++|++++|.++|++|++||+++||+||.+|++.|++++|+++|++|...|+.||..||++++.+|++.|+++.
T Consensus 227 ~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~ 306 (857)
T PLN03077 227 ALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERL 306 (857)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 040365 161 GKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMDLHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVK 240 (514)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 240 (514)
|.++|..+.+.|+.||..+||+|+++|+++|++++|.++|++|..||+++||+||.+|++.|++++|+++|++|.+.|+.
T Consensus 307 a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~ 386 (857)
T PLN03077 307 GREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVS 386 (857)
T ss_pred HHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 040365 241 PNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISNMHAGPTENVWLTLLSA 320 (514)
Q Consensus 241 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~ 320 (514)
||..||+.++.+|++.|++++|.++++.|.+ .|+.|+..+|++|+++|+++|++++|.++|++|+ +||..+|++++.+
T Consensus 387 Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~-~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d~vs~~~mi~~ 464 (857)
T PLN03077 387 PDEITIASVLSACACLGDLDVGVKLHELAER-KGLISYVVVANALIEMYSKCKCIDKALEVFHNIP-EKDVISWTSIIAG 464 (857)
T ss_pred CCceeHHHHHHHHhccchHHHHHHHHHHHHH-hCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCeeeHHHHHHH
Confidence 9999999999999999999999999999965 4999999999999999999999999999999998 6799999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHhCCCccCCcccEEEECCE----------
Q 040365 321 CRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRNKGMKKTPACSWIEVKNK---------- 390 (514)
Q Consensus 321 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~---------- 390 (514)
|.+.|+.++|..+|++|.+.-++|..+|..++.+|++.|..+.+.+++..|.+.|+.++.......++..
T Consensus 465 ~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~ 544 (857)
T PLN03077 465 LRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAW 544 (857)
T ss_pred HHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHH
Confidence 9999999999999999987656677888888877777777777777777777777665442221111000
Q ss_pred ------------EEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcccCCcccccccchHhHhhhH---hhhHHHHHHHHc
Q 040365 391 ------------AYAFVAGDKSHPFYHRINEALKELLERMEQEGYVPDTKEVLHDVEEEQKKNLL---YYHSERLAIVFG 455 (514)
Q Consensus 391 ------------~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~---~~h~e~la~~~~ 455 (514)
...++.|+..|++.+++. +++++|++.|+.||..++...+..+.+.+.+ ....+.+.-.+|
T Consensus 545 ~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~----~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~g 620 (857)
T PLN03077 545 NQFNSHEKDVVSWNILLTGYVAHGKGSMAV----ELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYS 620 (857)
T ss_pred HHHHhcCCChhhHHHHHHHHHHcCCHHHHH----HHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhC
Confidence 013456666778777766 8999999999999998887777666665554 223444544677
Q ss_pred cccCCCCCeEEEEecccccccchhhhHHHhhhc
Q 040365 456 IICTPDGTTIRIIKNLRVCGDCHTAIKFISKIV 488 (514)
Q Consensus 456 ~~~~~~~~~~~i~~nl~~c~d~h~~~~~~s~~~ 488 (514)
+.+...+.. ++++-+..+|+..+|.++|.+|+
T Consensus 621 i~P~~~~y~-~lv~~l~r~G~~~eA~~~~~~m~ 652 (857)
T PLN03077 621 ITPNLKHYA-CVVDLLGRAGKLTEAYNFINKMP 652 (857)
T ss_pred CCCchHHHH-HHHHHHHhCCCHHHHHHHHHHCC
Confidence 766654444 78999999999999999999986
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.7e-64 Score=533.98 Aligned_cols=489 Identities=19% Similarity=0.306 Sum_probs=428.9
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHhhCC-CCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 040365 4 SDLVSWNTVIVGLARNGLYEEALNIVRQMGNVN-LKPDSFTLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSSL 82 (514)
Q Consensus 4 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 82 (514)
++.++|+++|.+|.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++++.|.++|..|.+.|+.||..++|+|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 467799999999999999999999999998764 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCHHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHH
Q 040365 83 INMYAKCARVEDSHRLFCLLPVKDAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLGK 162 (514)
Q Consensus 83 i~~~~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 162 (514)
+++|+++|++++|.++|++|++||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|..+.+.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 040365 163 QLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMDLHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPN 242 (514)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 242 (514)
++|..+.+.|+.+|..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|++.|+.++|+++|++|.+.|+.||
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd 324 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 040365 243 SVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISNMHAGPTENVWLTLLSACR 322 (514)
Q Consensus 243 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~ 322 (514)
..||+.++.+|++.|++++|.+++..|.+. |+.|+..+|++|+++|+++|++++|.++|++|. +||..+|++|+.+|.
T Consensus 325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~lI~~y~ 402 (697)
T PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRT-GFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNALIAGYG 402 (697)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHh-CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHHHHHHHH
Confidence 999999999999999999999999999665 999999999999999999999999999999997 689999999999999
Q ss_pred hcCCHHHHHHHHHHHHhcC-CCCcchHHHHHHHHHHccChhHHHHHHHHHHh-CCCccCCcccEEEECCEEEEEEeCCCC
Q 040365 323 VHKNVELAGKVAEKIFMID-PNNMGAYVILSNTYAAARRWKDAASLRVFMRN-KGMKKTPACSWIEVKNKAYAFVAGDKS 400 (514)
Q Consensus 323 ~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~g~~~~~~~s~~~~~~~~~~~~~~~~~ 400 (514)
++|+.++|.++|++|.+.+ .+|..+|+.++.+|++.|++++|.++|+.|.+ .|+.|+...+... +.+...
T Consensus 403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~l--------i~~l~r 474 (697)
T PLN03081 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACM--------IELLGR 474 (697)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhH--------HHHHHh
Confidence 9999999999999999876 55789999999999999999999999999986 5998877554432 334445
Q ss_pred CCChHHHHHHHHHHHHHHHhCCcccCCcccccccchHhHhhhHhhhHHHHHHHHccccCCCCCeEEEEecccccccchhh
Q 040365 401 HPFYHRINEALKELLERMEQEGYVPDTKEVLHDVEEEQKKNLLYYHSERLAIVFGIICTPDGTTIRIIKNLRVCGDCHTA 480 (514)
Q Consensus 401 ~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~h~e~la~~~~~~~~~~~~~~~i~~nl~~c~d~h~~ 480 (514)
.+..++++ +++ ++.++.||...+...+..+.+.+.+..-.+.....+++.+...+..+.+++-+..+|+..+|
T Consensus 475 ~G~~~eA~----~~~---~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A 547 (697)
T PLN03081 475 EGLLDEAY----AMI---RRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEA 547 (697)
T ss_pred cCCHHHHH----HHH---HHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHH
Confidence 56666665 333 45688898765444444443333321111111122455444445555667778899999999
Q ss_pred hHHHhhhcceeEEE-------ecCCcccccCCcccC
Q 040365 481 IKFISKIVQREIIV-------RDNSRFHHFEDGKCS 509 (514)
Q Consensus 481 ~~~~s~~~~~~i~~-------rd~~~~h~f~~g~cs 509 (514)
.+++..|..+.+-. .-.+..|.|-.|..+
T Consensus 548 ~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~ 583 (697)
T PLN03081 548 AKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRL 583 (697)
T ss_pred HHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCC
Confidence 99999999886532 223456777666443
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.2e-60 Score=510.65 Aligned_cols=475 Identities=17% Similarity=0.249 Sum_probs=399.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 040365 8 SWNTVIVGLARNGLYEEALNIVRQMGNVNLKPDSFTLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSSLINMYA 87 (514)
Q Consensus 8 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 87 (514)
.++.++.+|.+.|..++|+.+|+.|.. ||..||+.++.+|++.|+++.|.++|+.|.+.|+.||..+|++||++|+
T Consensus 408 ~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~ 483 (1060)
T PLN03218 408 YHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCA 483 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 344555556666777777777666653 8999999999999999999999999999999999999999999999999
Q ss_pred HCCCHHHHHHHHccCC----CCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHH
Q 040365 88 KCARVEDSHRLFCLLP----VKDAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLGKQ 163 (514)
Q Consensus 88 ~~g~~~~A~~~f~~~~----~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 163 (514)
++|++++|.++|++|. .||.++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+
T Consensus 484 k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~ 563 (1060)
T PLN03218 484 KSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFD 563 (1060)
T ss_pred hCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999998 589999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH--cCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 040365 164 LHGCIIR--NGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMD----LHDIVSWTAVIMGNALHGNAHDAISLFEQMEKD 237 (514)
Q Consensus 164 ~~~~~~~--~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~----~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 237 (514)
+|++|.+ .|+.||..+|++||++|+++|++++|.++|+.|. .|+..+||++|.+|++.|++++|+++|++|.+.
T Consensus 564 lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~ 643 (1060)
T PLN03218 564 VLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK 643 (1060)
T ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 9999986 6789999999999999999999999999999997 557799999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhCC---CCCCHHHH
Q 040365 238 GVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISNMH---AGPTENVW 314 (514)
Q Consensus 238 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~p~~~~~ 314 (514)
|+.||..||+.++.+|++.|++++|.++|+.|.+ .|+.|+..+|++||++|+++|++++|.++|++|. ..||..+|
T Consensus 644 Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k-~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdvvty 722 (1060)
T PLN03218 644 GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARK-QGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTM 722 (1060)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 9999999999999999999999999999999965 4999999999999999999999999999999984 57999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCcchHHHHHHHHHHccChhHHHHHHHHHHhCCCccCCcccEEEEC-----
Q 040365 315 LTLLSACRVHKNVELAGKVAEKIFMID-PNNMGAYVILSNTYAAARRWKDAASLRVFMRNKGMKKTPACSWIEVK----- 388 (514)
Q Consensus 315 ~~ll~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~----- 388 (514)
++|+.+|++.|++++|.++|++|.+.+ .+|..+|..|+.+|++.|++++|.++++.|.+.|+.|+..++...++
T Consensus 723 N~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~ 802 (1060)
T PLN03218 723 NALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRR 802 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999998876 56789999999999999999999999999999999998755443221
Q ss_pred --------CEEEEEEeCCCCCCChH-HHHHHHHHHHHHHHhCCcccCCcccccccchHhHhhhHhhhHHHHHHHHccccC
Q 040365 389 --------NKAYAFVAGDKSHPFYH-RINEALKELLERMEQEGYVPDTKEVLHDVEEEQKKNLLYYHSERLAIVFGIICT 459 (514)
Q Consensus 389 --------~~~~~~~~~~~~~~~~~-~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~h~e~la~~~~~~~~ 459 (514)
..+..|-.+ ++... .-....-.++++|.+.|+.||..++...+....+.+.. ...+.+--.+++.+.
T Consensus 803 y~ka~~l~~~v~~f~~g---~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~-~~~~~m~~~m~~~~~ 878 (1060)
T PLN03218 803 FEKACALGEPVVSFDSG---RPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDA-TLRNRLIENLGISAD 878 (1060)
T ss_pred HHHHhhhhhhhhhhhcc---ccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccH-HHHHHHHHHhccCCC
Confidence 011112111 11110 11123348999999999999987665544322222221 122344445666666
Q ss_pred CCCCeE--EEEecccccccchhhhHHHhhhcceeEE
Q 040365 460 PDGTTI--RIIKNLRVCGDCHTAIKFISKIVQREII 493 (514)
Q Consensus 460 ~~~~~~--~i~~nl~~c~d~h~~~~~~s~~~~~~i~ 493 (514)
+++... .+++.+ |..-..|..++..|..+.|+
T Consensus 879 ~~~~~~y~~Li~g~--~~~~~~A~~l~~em~~~Gi~ 912 (1060)
T PLN03218 879 SQKQSNLSTLVDGF--GEYDPRAFSLLEEAASLGVV 912 (1060)
T ss_pred CcchhhhHHHHHhh--ccChHHHHHHHHHHHHcCCC
Confidence 655432 245543 11125799999888877554
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.6e-58 Score=494.46 Aligned_cols=418 Identities=18% Similarity=0.238 Sum_probs=377.4
Q ss_pred CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHH
Q 040365 1 MPVSDLVSWNTVIVGLARNGLYEEALNIVRQMGNVNLKPDSFTLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGS 80 (514)
Q Consensus 1 m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 80 (514)
|+.||+.+||.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+
T Consensus 432 M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTyn 511 (1060)
T PLN03218 432 IRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFG 511 (1060)
T ss_pred cCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 57799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCHHHHHHHHccCC----CCChhHHHHHHHHHHHCCChhHHHHHHHHHHH--CCCCCCHHHHHHHHHHHhc
Q 040365 81 SLINMYAKCARVEDSHRLFCLLP----VKDAISWNSIIAGCVQNGLFDEGLKFFRQMLI--AKIKPRHVSFSSIMPACAH 154 (514)
Q Consensus 81 ~li~~~~~~g~~~~A~~~f~~~~----~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~--~g~~p~~~t~~~ll~~~~~ 154 (514)
+||++|++.|++++|.++|+.|. .||.++||+||.+|++.|++++|.++|.+|.. .|+.||..||++++.+|++
T Consensus 512 aLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k 591 (1060)
T PLN03218 512 ALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACAN 591 (1060)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 99999999999999999999996 58999999999999999999999999999986 6799999999999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCChHHHHHH
Q 040365 155 LTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMD----LHDIVSWTAVIMGNALHGNAHDAISL 230 (514)
Q Consensus 155 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~----~~d~~~~~~li~~~~~~g~~~~A~~l 230 (514)
.|++++|.++|+.|.+.|+.|+..+||++|.+|++.|++++|.++|++|. .||..+|+++|.+|++.|+.++|.++
T Consensus 592 ~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l 671 (1060)
T PLN03218 592 AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEI 671 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999997 67999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhCC---C
Q 040365 231 FEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISNMH---A 307 (514)
Q Consensus 231 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~ 307 (514)
|++|.+.|+.||..+|+.++.+|++.|++++|.++|+.|.+ .|+.|+..+|++||.+|++.|++++|.++|++|. .
T Consensus 672 ~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~-~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi 750 (1060)
T PLN03218 672 LQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKS-IKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGL 750 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999955 5999999999999999999999999999999985 5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCcchHHHHHHHHH----Hcc-------------------ChhH
Q 040365 308 GPTENVWLTLLSACRVHKNVELAGKVAEKIFMID-PNNMGAYVILSNTYA----AAR-------------------RWKD 363 (514)
Q Consensus 308 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~----~~g-------------------~~~~ 363 (514)
.||..+|++|+.+|.+.|+++.|.+++++|.+.+ .+|..+|+.|+.+|. +++ ..++
T Consensus 751 ~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~ 830 (1060)
T PLN03218 751 CPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSW 830 (1060)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHH
Confidence 6999999999999999999999999999999877 557789999887643 222 2367
Q ss_pred HHHHHHHHHhCCCccCCcccEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcccCCcccc
Q 040365 364 AASLRVFMRNKGMKKTPACSWIEVKNKAYAFVAGDKSHPFYHRINEALKELLERMEQEGYVPDTKEVL 431 (514)
Q Consensus 364 a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~ 431 (514)
|..+|++|.+.|+.|+..+....+... ...+.......+++.|...|..|+..+..
T Consensus 831 Al~lf~eM~~~Gi~Pd~~T~~~vL~cl------------~~~~~~~~~~~m~~~m~~~~~~~~~~~y~ 886 (1060)
T PLN03218 831 ALMVYRETISAGTLPTMEVLSQVLGCL------------QLPHDATLRNRLIENLGISADSQKQSNLS 886 (1060)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHh------------cccccHHHHHHHHHHhccCCCCcchhhhH
Confidence 999999999999999876544333111 00111223345666666666666654433
No 7
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=100.00 E-value=9.1e-35 Score=230.06 Aligned_cols=106 Identities=70% Similarity=1.204 Sum_probs=98.2
Q ss_pred cccEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcccCCcccccccchHhH--------hhhHhhhHHHHHH
Q 040365 381 ACSWIEVKNKAYAFVAGDKSHPFYHRINEALKELLERMEQEGYVPDTKEVLHDVEEEQK--------KNLLYYHSERLAI 452 (514)
Q Consensus 381 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~--------~~~~~~h~e~la~ 452 (514)
|+||+++ |.|++||.+||+. ++..+|...||.|++..+.++++++++ +..+.+||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 6899987 9999999999988 566788889999999999998887665 6689999999999
Q ss_pred HHccccCCCCCeEEEEecc-cccccchhhhHHHhhhcceeEEEecCCcccccC
Q 040365 453 VFGIICTPDGTTIRIIKNL-RVCGDCHTAIKFISKIVQREIIVRDNSRFHHFE 504 (514)
Q Consensus 453 ~~~~~~~~~~~~~~i~~nl-~~c~d~h~~~~~~s~~~~~~i~~rd~~~~h~f~ 504 (514)
||||+++ +|+||+ |||+|||+|+|+||++++|+|+|||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999998 999999 999999999999999999999999999999997
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.94 E-value=4.5e-23 Score=227.73 Aligned_cols=364 Identities=12% Similarity=0.035 Sum_probs=283.6
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 040365 4 SDLVSWNTVIVGLARNGLYEEALNIVRQMGNVNLKPDSFTLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSSLI 83 (514)
Q Consensus 4 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 83 (514)
.+...+..+...+...|++++|...|+.+...+ +.+..++..+...+...|+.++|...+..+.+.+ +.+...+..++
T Consensus 497 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 574 (899)
T TIGR02917 497 DFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALA 574 (899)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHH
Confidence 355677788888888899999999988887754 4456677888888888888888888888887765 56667778888
Q ss_pred HHHHHCCCHHHHHHHHccCC---CCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHH
Q 040365 84 NMYAKCARVEDSHRLFCLLP---VKDAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHL 160 (514)
Q Consensus 84 ~~~~~~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 160 (514)
..|.+.|++++|..+++.+. ..+..+|..+...|.+.|++++|+..|+++.+.. +.+...+..+..++...|++++
T Consensus 575 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 653 (899)
T TIGR02917 575 QYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAK 653 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHH
Confidence 88888888888888888775 3466788888888888888888888888887653 3456667778888888888888
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 040365 161 GKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMD---LHDIVSWTAVIMGNALHGNAHDAISLFEQMEKD 237 (514)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 237 (514)
|..++..+.+.. +.+...+..++..+.+.|++++|.++++.+. ..+...|..+...+...|++++|++.|+++...
T Consensus 654 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 732 (899)
T TIGR02917 654 AITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR 732 (899)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 888888887764 5567788888888888888888888888875 335567777888888888888888888888775
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHH
Q 040365 238 GVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISNMH--AGPTENVWL 315 (514)
Q Consensus 238 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~ 315 (514)
.|+..++..+..++.+.|++++|.+.++.+.+. .+.+...+..+...|.+.|++++|.+.|+++. .+++..+++
T Consensus 733 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 808 (899)
T TIGR02917 733 --APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLN 808 (899)
T ss_pred --CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 355566777788888888888888888877653 23367777888888888888888888888763 234667777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHhCCC
Q 040365 316 TLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRNKGM 376 (514)
Q Consensus 316 ~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 376 (514)
.+...+...|+ ++|+..++++.+..|+++..+..++.+|...|++++|.+.++++.+.+.
T Consensus 809 ~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 809 NLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 88888888887 6788888888887787777777788888888888888888888776653
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.94 E-value=6.8e-23 Score=226.28 Aligned_cols=362 Identities=11% Similarity=-0.001 Sum_probs=321.0
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 040365 4 SDLVSWNTVIVGLARNGLYEEALNIVRQMGNVNLKPDSFTLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSSLI 83 (514)
Q Consensus 4 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 83 (514)
++..+|+.+...|...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++.+++.+ +.+..++..+.
T Consensus 463 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 540 (899)
T TIGR02917 463 DNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALA 540 (899)
T ss_pred CCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 467789999999999999999999999998754 3455677788888999999999999999999876 66788999999
Q ss_pred HHHHHCCCHHHHHHHHccCC---CCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHH
Q 040365 84 NMYAKCARVEDSHRLFCLLP---VKDAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHL 160 (514)
Q Consensus 84 ~~~~~~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 160 (514)
..|.+.|+.++|...|+++. ..+...+..++..|.+.|++++|+.+++++... .+.+..+|..+..++...|++++
T Consensus 541 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~ 619 (899)
T TIGR02917 541 GLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADA-APDSPEAWLMLGRAQLAAGDLNK 619 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999874 345677889999999999999999999999875 35677889999999999999999
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 040365 161 GKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMD---LHDIVSWTAVIMGNALHGNAHDAISLFEQMEKD 237 (514)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 237 (514)
|...+..+.+.. +.+...+..+...|.+.|++++|...|+++. +.+..+|..++..+...|++++|..+++.+...
T Consensus 620 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 698 (899)
T TIGR02917 620 AVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ 698 (899)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999998875 5567788899999999999999999999875 446789999999999999999999999999887
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHH
Q 040365 238 GVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISNMH--AGPTENVWL 315 (514)
Q Consensus 238 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~ 315 (514)
+ +++...+..+...+...|++++|...|+.+... .|+...+..+..++.+.|++++|.+.++++. .+.+..++.
T Consensus 699 ~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 774 (899)
T TIGR02917 699 H-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR---APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRT 774 (899)
T ss_pred C-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 4 456677888889999999999999999998653 5666788889999999999999999998873 335678899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHhC
Q 040365 316 TLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRNK 374 (514)
Q Consensus 316 ~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 374 (514)
.+...|...|+.++|...++++.+..|+++.++..++.+|...|+ .+|...+++..+.
T Consensus 775 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 775 ALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999 8899999988765
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=9.9e-20 Score=181.49 Aligned_cols=290 Identities=13% Similarity=0.121 Sum_probs=191.7
Q ss_pred HHHCCCHHHHHHHHccCCC--C-ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCChH
Q 040365 86 YAKCARVEDSHRLFCLLPV--K-DAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPR---HVSFSSIMPACAHLTTLH 159 (514)
Q Consensus 86 ~~~~g~~~~A~~~f~~~~~--~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~~~~~~~~~~ 159 (514)
+...|++++|...|.++.+ | +..+|..+...+.+.|++++|+.+++.+...+..++ ..++..+...+.+.|+++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 3445555555555555542 1 233455555555566666666666655554321111 123445555555666666
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCC--------hhHHHHHHHHHHhCCChHHHHHHH
Q 040365 160 LGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMDLHD--------IVSWTAVIMGNALHGNAHDAISLF 231 (514)
Q Consensus 160 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~d--------~~~~~~li~~~~~~g~~~~A~~l~ 231 (514)
.|..++..+.+.. +.+..+++.++..|.+.|++++|.+.|+.+...+ ...|..+...+.+.|++++|...|
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 6666666655442 3445556666666666666666666666654211 113455666677788888888888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHhCC-CC
Q 040365 232 EQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPS--FEHYAAVADLLGRAGKLQEAYEFISNMH-AG 308 (514)
Q Consensus 232 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~ 308 (514)
+++.+.. +.+...+..+...+.+.|++++|.++|+.+.+. .|+ ...+..++.+|.+.|++++|.+.++++. ..
T Consensus 204 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 204 KKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279 (389)
T ss_pred HHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8877642 223456667777888888888888888887643 333 4567778888888888888888888764 35
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH---ccChhHHHHHHHHHHhCCCccCCc
Q 040365 309 PTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAA---ARRWKDAASLRVFMRNKGMKKTPA 381 (514)
Q Consensus 309 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~g~~~~~~ 381 (514)
|+...+..+...+...|++++|..+++++++..|++. .+..++..+.. .|+.+++..++++|.+++++++|.
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 7766778888889999999999999999998888765 56666666554 558999999999999999999985
No 11
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.87 E-value=5e-18 Score=178.46 Aligned_cols=357 Identities=14% Similarity=0.025 Sum_probs=283.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHH
Q 040365 9 WNTVIVGLARNGLYEEALNIVRQMGNVNLKPDSFTLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSSLINMYAK 88 (514)
Q Consensus 9 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 88 (514)
+......|.+.|++++|+..|++.+.. .|+...|..+..++...|++++|...+..+++.. +.+..++..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 445667788899999999999998864 6888889999999999999999999999999875 5567788889999999
Q ss_pred CCCHHHHHHHHccCC---------------------------------CCChhHHHHHHHH-------------------
Q 040365 89 CARVEDSHRLFCLLP---------------------------------VKDAISWNSIIAG------------------- 116 (514)
Q Consensus 89 ~g~~~~A~~~f~~~~---------------------------------~~d~~~~~~li~~------------------- 116 (514)
.|++++|..-|.... .++..++..+...
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 999999976553221 0011111111000
Q ss_pred -------H----------HHCCChhHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcH
Q 040365 117 -------C----------VQNGLFDEGLKFFRQMLIAK-IKP-RHVSFSSIMPACAHLTTLHLGKQLHGCIIRNGFDDNM 177 (514)
Q Consensus 117 -------~----------~~~g~~~~A~~l~~~m~~~g-~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 177 (514)
+ ...+++++|++.|++..+.+ ..| +...+..+...+...|++++|...++..++.. +.+.
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~ 365 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVT 365 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcH
Confidence 0 11257889999999988764 234 34566777777888999999999999998864 4446
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 040365 178 FIASSLLDMYAKCGNIRLARCIFDKMD---LHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPN-SVAFVAVLTAC 253 (514)
Q Consensus 178 ~~~~~li~~y~k~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~ 253 (514)
..+..+...|...|++++|...|++.. ..+...|..+...+...|++++|+..|++.... .|+ ...+..+...+
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~ 443 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHH
Confidence 678888999999999999999999874 346788999999999999999999999999885 454 56677788889
Q ss_pred HccCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCH--------HHHHHHHHHHHh
Q 040365 254 SHAGLIDKAWSYFNSMTKDYGIAP-SFEHYAAVADLLGRAGKLQEAYEFISNMH-AGPTE--------NVWLTLLSACRV 323 (514)
Q Consensus 254 ~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~--------~~~~~ll~~~~~ 323 (514)
.+.|++++|...|+...+. .| +...|..+...+...|++++|.+.|++.. ..|+. ..++..+..+..
T Consensus 444 ~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~ 520 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKKN---FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQW 520 (615)
T ss_pred HHCCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHH
Confidence 9999999999999998653 45 57888999999999999999999998853 22321 112222333445
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHhC
Q 040365 324 HKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRNK 374 (514)
Q Consensus 324 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 374 (514)
.|++++|..+++++++++|++...+..++.+|...|++++|.+.+++..+.
T Consensus 521 ~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 521 KQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 799999999999999999999989999999999999999999999988654
No 12
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.86 E-value=9.5e-19 Score=174.41 Aligned_cols=286 Identities=13% Similarity=0.113 Sum_probs=225.6
Q ss_pred HHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHCCCHHHHHHHHccCCCC-C------hhHHHHHHHHHHHCCC
Q 040365 50 IFADYVDVIKGKEIHGYAIRHGLDANVCIGSSLINMYAKCARVEDSHRLFCLLPVK-D------AISWNSIIAGCVQNGL 122 (514)
Q Consensus 50 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-d------~~~~~~li~~~~~~g~ 122 (514)
.+...|++++|...+..+++.+ +.+..++..+...|.+.|++++|..+++.+... + ...++.+...|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3456678888888888888764 455667788888888888888888888776532 1 2457778888888888
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCc----HHHHHHHHHHHHhcCCHHHHHH
Q 040365 123 FDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLGKQLHGCIIRNGFDDN----MFIASSLLDMYAKCGNIRLARC 198 (514)
Q Consensus 123 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~y~k~g~~~~A~~ 198 (514)
+++|+.+|.++.+.. +++..++..++..+...|++++|.+.+..+.+.+..+. ...+..+...|.+.|++++|.+
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 888888888887652 45667788888888888888888888888877653222 2245667788899999999999
Q ss_pred HHHhCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCC
Q 040365 199 IFDKMD---LHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGI 275 (514)
Q Consensus 199 ~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 275 (514)
.|+++. ..+...+..+...|.+.|++++|.++|+++...+..+...++..+..++...|++++|...++.+.+.
T Consensus 202 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--- 278 (389)
T PRK11788 202 LLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--- 278 (389)
T ss_pred HHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence 999875 23456788888999999999999999999987532222466788999999999999999999998654
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhc
Q 040365 276 APSFEHYAAVADLLGRAGKLQEAYEFISNM-HAGPTENVWLTLLSACRV---HKNVELAGKVAEKIFMI 340 (514)
Q Consensus 276 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~ 340 (514)
.|+...+..++..+.+.|++++|.++++++ ...|+...++.++..+.. +|+.+++..+++++++.
T Consensus 279 ~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 279 YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 577677788999999999999999999876 445999999988887764 56888999988888763
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.85 E-value=2.9e-17 Score=172.40 Aligned_cols=326 Identities=10% Similarity=-0.048 Sum_probs=257.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHCC
Q 040365 11 TVIVGLARNGLYEEALNIVRQMGNVNLKPDSFTLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSSLINMYAKCA 90 (514)
Q Consensus 11 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 90 (514)
-++..+.+.|++++|+.+++........ +...+..++.+....|+++.|.+.++.+++.. |.+...+..+...+.+.|
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g 124 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcC
Confidence 4566788899999999999998876422 33455555666777999999999999999875 666778888999999999
Q ss_pred CHHHHHHHHccCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 040365 91 RVEDSHRLFCLLPV---KDAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLGKQLHGC 167 (514)
Q Consensus 91 ~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 167 (514)
++++|...|++... .+...|..+...+.+.|++++|...++++.... |+.......+..+...|++++|...+..
T Consensus 125 ~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~~~l~~~g~~~eA~~~~~~ 202 (656)
T PRK15174 125 QYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATCLSFLNKSRLPEDHDLARA 202 (656)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999988753 356788889999999999999999999887653 3332222223447788999999999999
Q ss_pred HHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHH----HHHHHHHHHHcCCC
Q 040365 168 IIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMD---LHDIVSWTAVIMGNALHGNAHD----AISLFEQMEKDGVK 240 (514)
Q Consensus 168 ~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~----A~~l~~~m~~~g~~ 240 (514)
+++....++......+...+.+.|++++|...|++.. ..+...+..+...|.+.|++++ |+..|++..+. .
T Consensus 203 ~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~ 280 (656)
T PRK15174 203 LLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--N 280 (656)
T ss_pred HHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--C
Confidence 8876533444555566788899999999999998875 3466788889999999999886 79999998874 4
Q ss_pred CC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHH-HHH
Q 040365 241 PN-SVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAP-SFEHYAAVADLLGRAGKLQEAYEFISNMH-AGPTENV-WLT 316 (514)
Q Consensus 241 p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~-~~~ 316 (514)
|+ ...+..+...+...|++++|...++...+. .| +...+..+...|.+.|++++|.+.++++. ..|+... +..
T Consensus 281 P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~ 357 (656)
T PRK15174 281 SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRY 357 (656)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHH
Confidence 54 567888888999999999999999988653 55 46677778899999999999999998874 4465444 344
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 040365 317 LLSACRVHKNVELAGKVAEKIFMIDPNNM 345 (514)
Q Consensus 317 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 345 (514)
+..++...|+.++|...++++++..|++.
T Consensus 358 ~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 358 AAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 56778899999999999999999988753
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.84 E-value=1.9e-18 Score=166.06 Aligned_cols=356 Identities=13% Similarity=0.128 Sum_probs=294.4
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-hhhHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhH-HHHHHH
Q 040365 7 VSWNTVIVGLARNGLYEEALNIVRQMGNVNLKPD-SFTLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCI-GSSLIN 84 (514)
Q Consensus 7 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~ 84 (514)
.+|+.+...+-..|++++|+.+++.|.+. +|+ ...|..+..++...|+.+.|.+.+...++. .|+... .+.+-.
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgn 192 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhH
Confidence 46888889999999999999999999985 454 568999999999999999999999999886 455443 344455
Q ss_pred HHHHCCCHHHHHHHHccCC--CCC-hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHH
Q 040365 85 MYAKCARVEDSHRLFCLLP--VKD-AISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPR-HVSFSSIMPACAHLTTLHL 160 (514)
Q Consensus 85 ~~~~~g~~~~A~~~f~~~~--~~d-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~ 160 (514)
..-..|++.+|...+.+.. +|. .++|+-|...+-.+|+..+|++.|++.... .|+ ...|..+-..|...+.++.
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchH
Confidence 5566799999988887654 333 467999999999999999999999998763 454 3567788888888889999
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCC--CC-hhHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 040365 161 GKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMDL--HD-IVSWTAVIMGNALHGNAHDAISLFEQMEKD 237 (514)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~--~d-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 237 (514)
|...+.+..... +....++..|...|-..|.++-|+..+++..+ |+ ...||.|..++-..|+..+|.+.|.+....
T Consensus 271 Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l 349 (966)
T KOG4626|consen 271 AVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL 349 (966)
T ss_pred HHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh
Confidence 988888877654 44566777788889999999999999998763 33 468999999999999999999999998874
Q ss_pred CCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHH
Q 040365 238 GVKPNS-VAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPS-FEHYAAVADLLGRAGKLQEAYEFISNM-HAGPT-ENV 313 (514)
Q Consensus 238 g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~ 313 (514)
.|+. ...+.|...+...|.+++|..+|.... .+.|. ....+.|...|-..|++++|..-+++. .++|+ ...
T Consensus 350 --~p~hadam~NLgni~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda 424 (966)
T KOG4626|consen 350 --CPNHADAMNNLGNIYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADA 424 (966)
T ss_pred --CCccHHHHHHHHHHHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHH
Confidence 5553 578889999999999999999998765 55664 567888999999999999999999875 46676 467
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHhC
Q 040365 314 WLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRNK 374 (514)
Q Consensus 314 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 374 (514)
++.+...|...|+.+.|.+.+.+++..+|.-+.++..|..+|-.+|+..+|..-++...+-
T Consensus 425 ~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 425 LSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred HHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 8999999999999999999999999999988889999999999999999999998887653
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.82 E-value=1.4e-17 Score=160.19 Aligned_cols=351 Identities=14% Similarity=0.114 Sum_probs=298.3
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHH-HHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 040365 4 SDLVSWNTVIVGLARNGLYEEALNIVRQMGNVNLKPDSFTLSSVL-PIFADYVDVIKGKEIHGYAIRHGLDANVCIGSSL 82 (514)
Q Consensus 4 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 82 (514)
..+..|..+..++...|+.+.|.+.|.+.++. .|+.+...+-+ ......|++++|...+.++++.. +.-..+|+.|
T Consensus 148 ~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~q-p~fAiawsnL 224 (966)
T KOG4626|consen 148 KFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNL 224 (966)
T ss_pred hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHHHhhC-Cceeeeehhc
Confidence 36778999999999999999999999998874 57665443333 33345689999999999998874 3445678999
Q ss_pred HHHHHHCCCHHHHHHHHccCCCCC---hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCh
Q 040365 83 INMYAKCARVEDSHRLFCLLPVKD---AISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPR-HVSFSSIMPACAHLTTL 158 (514)
Q Consensus 83 i~~~~~~g~~~~A~~~f~~~~~~d---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~ 158 (514)
...+-..|++..|...|++...-| ..+|-.|...|...+.+++|+..|.+.... .|+ ...+..+...|-..|.+
T Consensus 225 g~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~l 302 (966)
T KOG4626|consen 225 GCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLL 302 (966)
T ss_pred chHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccH
Confidence 999999999999999999987543 457888999999999999999999888764 454 56677788888999999
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHH
Q 040365 159 HLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMD---LHDIVSWTAVIMGNALHGNAHDAISLFEQME 235 (514)
Q Consensus 159 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~ 235 (514)
+.|...+++.++.. +.-...|+.|..++-..|++.+|.+.+.+.. ..-..+.+.|...|...|.+++|..+|....
T Consensus 303 dlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al 381 (966)
T KOG4626|consen 303 DLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKAL 381 (966)
T ss_pred HHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 99999999999874 4446789999999999999999999999876 3345788999999999999999999999988
Q ss_pred HcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-H
Q 040365 236 KDGVKPNS-VAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPS-FEHYAAVADLLGRAGKLQEAYEFISNM-HAGPT-E 311 (514)
Q Consensus 236 ~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~ 311 (514)
+ +.|.- ..++.|...|-+.|++++|+..+++.. .+.|+ ...|+.+...|...|+.+.|.+.+.+. ...|. .
T Consensus 382 ~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~A 456 (966)
T KOG4626|consen 382 E--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFA 456 (966)
T ss_pred h--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHH
Confidence 7 56664 578899999999999999999999885 67896 688999999999999999999999876 45564 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHH
Q 040365 312 NVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAA 365 (514)
Q Consensus 312 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 365 (514)
...+.|.+.+...|+..+|+..++..+.+.|+-+.+|..++.+..-..+|.+-.
T Consensus 457 eAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d 510 (966)
T KOG4626|consen 457 EAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYD 510 (966)
T ss_pred HHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchH
Confidence 678999999999999999999999999999999999999998887777776633
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.82 E-value=1.3e-16 Score=167.57 Aligned_cols=326 Identities=9% Similarity=-0.052 Sum_probs=266.0
Q ss_pred hhHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHCCCHHHHHHHHccCCC---CChhHHHHHHHHHH
Q 040365 42 FTLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSSLINMYAKCARVEDSHRLFCLLPV---KDAISWNSIIAGCV 118 (514)
Q Consensus 42 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~ 118 (514)
.....++..+.+.|++++|..++...+... +.+......++......|++++|...|+.+.. .+...|..+...+.
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~ 121 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLL 121 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 345667788889999999999999998875 44555666666777889999999999999863 35678888999999
Q ss_pred HCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 040365 119 QNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARC 198 (514)
Q Consensus 119 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~ 198 (514)
+.|++++|+..|++..+.. +.+...+..+..++...|++++|...+..+..... .+...+..+. .+...|++++|..
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~~-~l~~~g~~~eA~~ 198 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATCL-SFLNKSRLPEDHD 198 (656)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHHH-HHHHcCCHHHHHH
Confidence 9999999999999998752 33456777888899999999999999998877652 3333443333 4788999999999
Q ss_pred HHHhCCCC----ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH----HHHHHHHhH
Q 040365 199 IFDKMDLH----DIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDK----AWSYFNSMT 270 (514)
Q Consensus 199 ~~~~m~~~----d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~----a~~~~~~m~ 270 (514)
.++.+... +...+..+...+...|++++|+..|++..... +.+...+..+..++...|++++ |...|+...
T Consensus 199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al 277 (656)
T PRK15174 199 LARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL 277 (656)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 99987532 33445556678889999999999999999853 2245677788889999999986 899999886
Q ss_pred HhcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch
Q 040365 271 KDYGIAP-SFEHYAAVADLLGRAGKLQEAYEFISNMH-AGP-TENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGA 347 (514)
Q Consensus 271 ~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 347 (514)
+ +.| +...+..+...+.+.|++++|...+++.. ..| +...+..+..++...|++++|...++++.+.+|+++..
T Consensus 278 ~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~ 354 (656)
T PRK15174 278 Q---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKW 354 (656)
T ss_pred h---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHH
Confidence 4 456 57888999999999999999999998863 334 46678888999999999999999999999999988777
Q ss_pred HHHHHHHHHHccChhHHHHHHHHHHhCC
Q 040365 348 YVILSNTYAAARRWKDAASLRVFMRNKG 375 (514)
Q Consensus 348 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g 375 (514)
+..++.++...|++++|.+.++...+..
T Consensus 355 ~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 355 NRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 7777889999999999999999886653
No 17
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.82 E-value=2.4e-16 Score=176.53 Aligned_cols=354 Identities=11% Similarity=0.051 Sum_probs=228.2
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC-chhHH------------
Q 040365 13 IVGLARNGLYEEALNIVRQMGNVNLKPDSFTLSSVLPIFADYVDVIKGKEIHGYAIRHGLDA-NVCIG------------ 79 (514)
Q Consensus 13 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~------------ 79 (514)
...+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|...++++++..... ....+
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 345667888889999998888753 3356677788888888899999998888888764221 11111
Q ss_pred HHHHHHHHHCCCHHHHHHHHccCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH----
Q 040365 80 SSLINMYAKCARVEDSHRLFCLLPV---KDAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPAC---- 152 (514)
Q Consensus 80 ~~li~~~~~~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~---- 152 (514)
..+...+.+.|++++|...|++... .+...+..+...+...|++++|++.|++..+.. +.+...+..+...+
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~ 433 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQS 433 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 1224456788888888888887652 355677778888888889999988888887642 22233333333333
Q ss_pred --------------------------------------hccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHH
Q 040365 153 --------------------------------------AHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIR 194 (514)
Q Consensus 153 --------------------------------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~ 194 (514)
...|++++|.+.+++.++.. +.+..++..+...|.+.|+++
T Consensus 434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~ 512 (1157)
T PRK11447 434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRS 512 (1157)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 23455555555555555443 223444444555555555555
Q ss_pred HHHHHHHhCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH---------HHHHHHHHHHccCCHHHH
Q 040365 195 LARCIFDKMD---LHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSV---------AFVAVLTACSHAGLIDKA 262 (514)
Q Consensus 195 ~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---------t~~~ll~a~~~~g~~~~a 262 (514)
+|...|+++. ..+...+..+...+...|+.++|+..++++......++.. .+..+...+...|+.++|
T Consensus 513 ~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA 592 (1157)
T PRK11447 513 QADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA 592 (1157)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence 5555555442 1133333333333444555555555554432211111111 112334455566666777
Q ss_pred HHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 040365 263 WSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISNMH-AG-PTENVWLTLLSACRVHKNVELAGKVAEKIFMI 340 (514)
Q Consensus 263 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 340 (514)
..+++. .+++...+..+.+.+.+.|++++|++.|++.. .. .+...+..+...+...|++++|+..++++.+.
T Consensus 593 ~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 593 EALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred HHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 666551 12355666778888888899999998888763 23 35778888888898999999999999988888
Q ss_pred CCCCcchHHHHHHHHHHccChhHHHHHHHHHHhCC
Q 040365 341 DPNNMGAYVILSNTYAAARRWKDAASLRVFMRNKG 375 (514)
Q Consensus 341 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 375 (514)
.|+++..+..+..++...|++++|.++++.+....
T Consensus 667 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 667 ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 88888888888888889999999999998887653
No 18
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.82 E-value=6.8e-16 Score=172.90 Aligned_cols=361 Identities=9% Similarity=0.000 Sum_probs=278.0
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChh---hHH------------HHHHHHhCCCChHHHHHHHHHHHH
Q 040365 5 DLVSWNTVIVGLARNGLYEEALNIVRQMGNVNLKPDSF---TLS------------SVLPIFADYVDVIKGKEIHGYAIR 69 (514)
Q Consensus 5 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~------------~ll~~~~~~~~~~~a~~~~~~~~~ 69 (514)
|...|..|...|.+.|++++|+..|++..+.. |+.. .+. .....+...|++++|...++++++
T Consensus 302 ~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~--p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~ 379 (1157)
T PRK11447 302 DSEALGALGQAYSQQGDRARAVAQFEKALALD--PHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQ 379 (1157)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66788888899999999999999999988753 3221 111 123456678899999999999988
Q ss_pred hCCCCchhHHHHHHHHHHHCCCHHHHHHHHccCCC--C-ChhHHHH----------------------------------
Q 040365 70 HGLDANVCIGSSLINMYAKCARVEDSHRLFCLLPV--K-DAISWNS---------------------------------- 112 (514)
Q Consensus 70 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~-d~~~~~~---------------------------------- 112 (514)
.. +.+...+..|...|...|++++|.+.|++... | +...+..
T Consensus 380 ~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~ 458 (1157)
T PRK11447 380 VD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERS 458 (1157)
T ss_pred hC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 75 55667777888899999999999998887652 2 2222222
Q ss_pred --------HHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 040365 113 --------IIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLL 184 (514)
Q Consensus 113 --------li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 184 (514)
+...+...|++++|++.|++..+.. +-+...+..+...+.+.|++++|...++.+++.. +.+...+..+.
T Consensus 459 l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~a 536 (1157)
T PRK11447 459 LQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYG 536 (1157)
T ss_pred hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHH
Confidence 2344556899999999999988753 2345566778889999999999999999998764 44555555566
Q ss_pred HHHHhcCCHHHHHHHHHhCCCC----Chh---------HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 040365 185 DMYAKCGNIRLARCIFDKMDLH----DIV---------SWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLT 251 (514)
Q Consensus 185 ~~y~k~g~~~~A~~~~~~m~~~----d~~---------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 251 (514)
..+.+.|+.++|...++.++.. +.. .+..+...+...|+.++|+.+++. .+++...+..+..
T Consensus 537 l~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~ 611 (1157)
T PRK11447 537 LYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLAD 611 (1157)
T ss_pred HHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHH
Confidence 6778899999999999998632 111 123456678889999999999882 2345566777888
Q ss_pred HHHccCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHH
Q 040365 252 ACSHAGLIDKAWSYFNSMTKDYGIAP-SFEHYAAVADLLGRAGKLQEAYEFISNMHA-GP-TENVWLTLLSACRVHKNVE 328 (514)
Q Consensus 252 a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~p-~~~~~~~ll~~~~~~~~~~ 328 (514)
.+.+.|+.++|+..|+...+. .| +...+..++..|...|++++|.+.++.... .| +..++..+..++...|+++
T Consensus 612 ~~~~~g~~~~A~~~y~~al~~---~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~ 688 (1157)
T PRK11447 612 WAQQRGDYAAARAAYQRVLTR---EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTA 688 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHH
Confidence 999999999999999998753 55 678899999999999999999999998752 33 5667788888999999999
Q ss_pred HHHHHHHHHHhcCCCCc------chHHHHHHHHHHccChhHHHHHHHHHHh-CCCcc
Q 040365 329 LAGKVAEKIFMIDPNNM------GAYVILSNTYAAARRWKDAASLRVFMRN-KGMKK 378 (514)
Q Consensus 329 ~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~g~~~ 378 (514)
+|..++++++...|+++ ..+..++..+...|++++|...++.... .|+.|
T Consensus 689 eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 689 AAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITP 745 (1157)
T ss_pred HHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Confidence 99999999998775543 3566678999999999999999988753 35543
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.81 E-value=7.6e-16 Score=165.07 Aligned_cols=360 Identities=9% Similarity=0.025 Sum_probs=223.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHH
Q 040365 9 WNTVIVGLARNGLYEEALNIVRQMGNVNLKPDSFTLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSSLINMYAK 88 (514)
Q Consensus 9 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 88 (514)
+..+...+.+.|++++|+.+|++..... +.+...+..+...+...|+.++|...++.+++.. +.+.. +..+..++..
T Consensus 52 ~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~ 128 (765)
T PRK10049 52 YAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKR 128 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHH
Confidence 4455555555555555555555544431 2223333444444455555555555555555442 33333 4445555555
Q ss_pred CCCHHHHHHHHccCCC--C-ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHH------HHHHHHHHHh-----c
Q 040365 89 CARVEDSHRLFCLLPV--K-DAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHV------SFSSIMPACA-----H 154 (514)
Q Consensus 89 ~g~~~~A~~~f~~~~~--~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~------t~~~ll~~~~-----~ 154 (514)
.|+.++|...++++.+ | +...+..+...+...+..++|++.+++... .|+.. ....++.... .
T Consensus 129 ~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~ 205 (765)
T PRK10049 129 AGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSE 205 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccCh
Confidence 5555555555554431 1 333344444444455555555555443322 12110 0011111111 1
Q ss_pred cCCh---HHHHHHHHHHHHc-CCCCcHH--HHHH---HHHHHHhcCCHHHHHHHHHhCCCCC--hh--HHHHHHHHHHhC
Q 040365 155 LTTL---HLGKQLHGCIIRN-GFDDNMF--IASS---LLDMYAKCGNIRLARCIFDKMDLHD--IV--SWTAVIMGNALH 221 (514)
Q Consensus 155 ~~~~---~~a~~~~~~~~~~-~~~~~~~--~~~~---li~~y~k~g~~~~A~~~~~~m~~~d--~~--~~~~li~~~~~~ 221 (514)
.+++ +.|.+.++.+++. ...|+.. .... .+.++...|++++|+..|+.+...+ .. .-..+...|...
T Consensus 206 ~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~ 285 (765)
T PRK10049 206 KERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKL 285 (765)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhc
Confidence 1122 4566666666643 1222211 1111 1234457799999999999987432 11 122256789999
Q ss_pred CChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcC----------CCCC---HhHHHHH
Q 040365 222 GNAHDAISLFEQMEKDGVKP---NSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYG----------IAPS---FEHYAAV 285 (514)
Q Consensus 222 g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----------~~p~---~~~~~~l 285 (514)
|++++|+..|+++....... .......+..++...|++++|..+++.+..... -.|+ ...+..+
T Consensus 286 g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~ 365 (765)
T PRK10049 286 HQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLL 365 (765)
T ss_pred CCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHH
Confidence 99999999999987643111 124566677788999999999999999865321 1122 2345677
Q ss_pred HHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhH
Q 040365 286 ADLLGRAGKLQEAYEFISNMH--AGPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKD 363 (514)
Q Consensus 286 i~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 363 (514)
...+...|++++|++.++++. .+.+...+..+...+...|++++|+..++++++++|++...+..++..+...|+|++
T Consensus 366 a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~ 445 (765)
T PRK10049 366 SQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQ 445 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHH
Confidence 888999999999999999874 234678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 040365 364 AASLRVFMRNK 374 (514)
Q Consensus 364 a~~~~~~m~~~ 374 (514)
|..+++.+.+.
T Consensus 446 A~~~~~~ll~~ 456 (765)
T PRK10049 446 MDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHHh
Confidence 99999999764
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.77 E-value=8.3e-15 Score=154.20 Aligned_cols=354 Identities=13% Similarity=0.033 Sum_probs=265.5
Q ss_pred CCCcchHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHhCC----------
Q 040365 3 VSDLVSWNTVIVGLARNGLYEEALNIVRQMGNVNLKPDSFTLSSVLPIFADYVDVIKGKEIHGYAIRHGL---------- 72 (514)
Q Consensus 3 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~---------- 72 (514)
.|+...|..+..+|.+.|++++|+..+...++.. +.+...|..+..++...|++++|..-+..+...+-
T Consensus 157 ~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~ 235 (615)
T TIGR00990 157 KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAV 235 (615)
T ss_pred CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHH
Confidence 4677789999999999999999999999998753 33455788889999999999999765544322110
Q ss_pred -------------------CCchhHHHHH------------------------------HHHH------HHCCCHHHHHH
Q 040365 73 -------------------DANVCIGSSL------------------------------INMY------AKCARVEDSHR 97 (514)
Q Consensus 73 -------------------~~~~~~~~~l------------------------------i~~~------~~~g~~~~A~~ 97 (514)
+++...+..+ +..+ ...+++++|.+
T Consensus 236 ~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~ 315 (615)
T TIGR00990 236 ERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAAR 315 (615)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHH
Confidence 1110011100 1111 11257888999
Q ss_pred HHccCCC------CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 040365 98 LFCLLPV------KDAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPR-HVSFSSIMPACAHLTTLHLGKQLHGCIIR 170 (514)
Q Consensus 98 ~f~~~~~------~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 170 (514)
.|+.... .+...|+.+...+...|++++|+..|++..+. .|+ ...|..+...+...|++++|...++.+++
T Consensus 316 ~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 393 (615)
T TIGR00990 316 AFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALK 393 (615)
T ss_pred HHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8887653 24557888889999999999999999998875 454 55788888889999999999999999988
Q ss_pred cCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHH
Q 040365 171 NGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMD---LHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPN-SVAF 246 (514)
Q Consensus 171 ~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~ 246 (514)
.. +.+..++..+...|...|++++|...|++.. ..+...|..+...+.+.|++++|+..|++.... .|+ ...+
T Consensus 394 ~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~ 470 (615)
T TIGR00990 394 LN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVY 470 (615)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHH
Confidence 75 5667889999999999999999999999875 335677888889999999999999999998874 444 5778
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCH--------hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 040365 247 VAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSF--------EHYAAVADLLGRAGKLQEAYEFISNM-HAGP-TENVWLT 316 (514)
Q Consensus 247 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--------~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ 316 (514)
..+..++...|++++|+..|+.... +.|+. ..++.....+...|++++|.+++++. ...| +...+..
T Consensus 471 ~~lg~~~~~~g~~~~A~~~~~~Al~---l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~ 547 (615)
T TIGR00990 471 NYYGELLLDQNKFDEAIEKFDTAIE---LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVAT 547 (615)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHh---cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 8889999999999999999998764 33321 11222233344579999999999885 3344 4567889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHh
Q 040365 317 LLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRN 373 (514)
Q Consensus 317 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 373 (514)
+...+...|++++|...++++.++.+..... .....+.+|.++.....+
T Consensus 548 la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~--------~~a~~~~~a~~~~~~~~~ 596 (615)
T TIGR00990 548 MAQLLLQQGDVDEALKLFERAAELARTEGEL--------VQAISYAEATRTQIQVQE 596 (615)
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHhccHHHH--------HHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999887653321 122344555555544443
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.76 E-value=3.4e-15 Score=160.14 Aligned_cols=357 Identities=12% Similarity=-0.001 Sum_probs=268.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHCC
Q 040365 11 TVIVGLARNGLYEEALNIVRQMGNVNLKPDSFTLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSSLINMYAKCA 90 (514)
Q Consensus 11 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 90 (514)
-.+......|+.++|++++....... +.+...+..+..++...|++++|.++++.+++.. +.+...+..+...+.+.|
T Consensus 20 d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g 97 (765)
T PRK10049 20 DWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAG 97 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC
Confidence 34566777899999999999997632 3445568889999999999999999999998874 556777889999999999
Q ss_pred CHHHHHHHHccCCC--C-ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 040365 91 RVEDSHRLFCLLPV--K-DAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLGKQLHGC 167 (514)
Q Consensus 91 ~~~~A~~~f~~~~~--~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 167 (514)
+.++|...+++... | +.. |..+...+...|+.++|+..++++.+.. +-+...+..+..++...+..+.|.+.++.
T Consensus 98 ~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~ 175 (765)
T PRK10049 98 QYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDD 175 (765)
T ss_pred CHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHh
Confidence 99999999998752 3 455 8889999999999999999999998863 22444455667777788888989888876
Q ss_pred HHHcCCCCcH------HHHHHHHHHHH-----hcCCH---HHHHHHHHhCCC-----CChh-HH----HHHHHHHHhCCC
Q 040365 168 IIRNGFDDNM------FIASSLLDMYA-----KCGNI---RLARCIFDKMDL-----HDIV-SW----TAVIMGNALHGN 223 (514)
Q Consensus 168 ~~~~~~~~~~------~~~~~li~~y~-----k~g~~---~~A~~~~~~m~~-----~d~~-~~----~~li~~~~~~g~ 223 (514)
+.+ .|+. .....++..+. ..+++ ++|.+.++.+.. |+.. .+ ...+..+...|+
T Consensus 176 ~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~ 252 (765)
T PRK10049 176 ANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDR 252 (765)
T ss_pred CCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhh
Confidence 553 2221 11222233222 22334 678887777651 2211 11 111345567799
Q ss_pred hHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC--CHhHHHHHHHHHHhcCCHHHHHH
Q 040365 224 AHDAISLFEQMEKDGVK-PNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAP--SFEHYAAVADLLGRAGKLQEAYE 300 (514)
Q Consensus 224 ~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~ 300 (514)
+++|+..|+++.+.+.. |+.. -..+..++...|++++|..+|+.+.+.....+ .......+..++.+.|++++|.+
T Consensus 253 ~~eA~~~~~~ll~~~~~~P~~a-~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~ 331 (765)
T PRK10049 253 YKDVISEYQRLKAEGQIIPPWA-QRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALT 331 (765)
T ss_pred HHHHHHHHHHhhccCCCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHH
Confidence 99999999999987532 4432 22256789999999999999999865321111 13456667778899999999999
Q ss_pred HHHhCCCC-C-------------C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhH
Q 040365 301 FISNMHAG-P-------------T---ENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKD 363 (514)
Q Consensus 301 ~~~~m~~~-p-------------~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 363 (514)
+++.+... | + ...+..+...+...|+.++|+..++++....|.++..+..++.++...|++++
T Consensus 332 ~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~ 411 (765)
T PRK10049 332 VTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRA 411 (765)
T ss_pred HHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Confidence 99887422 2 3 23456677788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCC
Q 040365 364 AASLRVFMRNKG 375 (514)
Q Consensus 364 a~~~~~~m~~~g 375 (514)
|.+.+++..+..
T Consensus 412 A~~~l~~al~l~ 423 (765)
T PRK10049 412 AENELKKAEVLE 423 (765)
T ss_pred HHHHHHHHHhhC
Confidence 999999887654
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.71 E-value=7.8e-13 Score=139.75 Aligned_cols=361 Identities=10% Similarity=0.042 Sum_probs=257.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHCC
Q 040365 11 TVIVGLARNGLYEEALNIVRQMGNVNLKPDSFTLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSSLINMYAKCA 90 (514)
Q Consensus 11 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 90 (514)
.++..+...|+.++|+..+++.... -..+...+..+...+...|++++|.++++.+++.. +.++.++..|+..|...+
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~ 150 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAG 150 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcC
Confidence 7778888888888998888888721 11112223333456778899999999999998876 556777778888899999
Q ss_pred CHHHHHHHHccCCCCChhHHHHHHHHHHH--CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHH----
Q 040365 91 RVEDSHRLFCLLPVKDAISWNSIIAGCVQ--NGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLGKQL---- 164 (514)
Q Consensus 91 ~~~~A~~~f~~~~~~d~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~---- 164 (514)
+.++|++.++.+...+......+..+|.. .++..+|++.++++.+.. +-+...+..+..+..+.|....|.++
T Consensus 151 q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~ 229 (822)
T PRK14574 151 RGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKEN 229 (822)
T ss_pred CHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhC
Confidence 99999999988875443332224444444 556656999999988763 22344444455555544433333222
Q ss_pred --------------------------------------------HHHHHHc-C-CCCcHHH-HHH---HHHHHHhcCCHH
Q 040365 165 --------------------------------------------HGCIIRN-G-FDDNMFI-ASS---LLDMYAKCGNIR 194 (514)
Q Consensus 165 --------------------------------------------~~~~~~~-~-~~~~~~~-~~~---li~~y~k~g~~~ 194 (514)
++.+... + .++.... ..+ .+-++.+.|+..
T Consensus 230 p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~ 309 (822)
T PRK14574 230 PNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTA 309 (822)
T ss_pred ccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHH
Confidence 2222221 1 1222111 222 344667889999
Q ss_pred HHHHHHHhCCCC----ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHccCCHHHHHHH
Q 040365 195 LARCIFDKMDLH----DIVSWTAVIMGNALHGNAHDAISLFEQMEKDG-----VKPNSVAFVAVLTACSHAGLIDKAWSY 265 (514)
Q Consensus 195 ~A~~~~~~m~~~----d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----~~p~~~t~~~ll~a~~~~g~~~~a~~~ 265 (514)
++++.|+.+... ...+--++.++|...+++++|+.+|+++.... ..++......|..++...+++++|..+
T Consensus 310 ~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~ 389 (822)
T PRK14574 310 DLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQF 389 (822)
T ss_pred HHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHH
Confidence 999999999833 23455678889999999999999999987643 122334457889999999999999999
Q ss_pred HHHhHHhcC----------CCCC---HhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHH
Q 040365 266 FNSMTKDYG----------IAPS---FEHYAAVADLLGRAGKLQEAYEFISNMH--AGPTENVWLTLLSACRVHKNVELA 330 (514)
Q Consensus 266 ~~~m~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a 330 (514)
++.+.+... -.|+ ...+..++..+...|++.+|++.++++. .+-|...+..+...+...|.+..|
T Consensus 390 l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A 469 (822)
T PRK14574 390 AVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKA 469 (822)
T ss_pred HHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 999965211 0122 2344556777899999999999999874 335788899999999999999999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHhC
Q 040365 331 GKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRNK 374 (514)
Q Consensus 331 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 374 (514)
+..++.+..++|++..+...++.++...|+|.+|.++.+.+.+.
T Consensus 470 ~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 470 EQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999998877654
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.71 E-value=5e-13 Score=144.07 Aligned_cols=353 Identities=11% Similarity=0.026 Sum_probs=242.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHhC-CCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHH
Q 040365 10 NTVIVGLARNGLYEEALNIVRQMGNVNLKPDSFTLSSVLPIFAD-YVDVIKGKEIHGYAIRHGLDANVCIGSSLINMYAK 88 (514)
Q Consensus 10 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 88 (514)
-.+...|.+.|++++|+.++.++.+.+. .+..-...+-.++.. .++ +.+..++.. .+..++.+..++++.|.+
T Consensus 186 L~~~rlY~~l~dw~~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~ 259 (987)
T PRK09782 186 TDLLQRAIYLKQWSQADTLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAY 259 (987)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHH
Confidence 3348899999999999999999999863 334445556667776 466 667777442 334688899999999999
Q ss_pred CCCHHHHHHHHccCCC-----CChhHHHH---------------------------H---HH------------------
Q 040365 89 CARVEDSHRLFCLLPV-----KDAISWNS---------------------------I---IA------------------ 115 (514)
Q Consensus 89 ~g~~~~A~~~f~~~~~-----~d~~~~~~---------------------------l---i~------------------ 115 (514)
.|+.++|.+++.+++. |+..+|-- + +.
T Consensus 260 ~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (987)
T PRK09782 260 RGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATL 339 (987)
T ss_pred CCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 9999999999988751 11111100 0 01
Q ss_pred ---------------------------------------------HHHHCCChhHHHHHHHHHHHC-C-CCCCHHHHHHH
Q 040365 116 ---------------------------------------------GCVQNGLFDEGLKFFRQMLIA-K-IKPRHVSFSSI 148 (514)
Q Consensus 116 ---------------------------------------------~~~~~g~~~~A~~l~~~m~~~-g-~~p~~~t~~~l 148 (514)
...+.|+.++|.++|+..... + -.++.....-+
T Consensus 340 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l 419 (987)
T PRK09782 340 PANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARL 419 (987)
T ss_pred CcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHH
Confidence 113455666666666655331 0 01111111122
Q ss_pred HHHHhcc---------------------------------------------------------------CChHHHHHHH
Q 040365 149 MPACAHL---------------------------------------------------------------TTLHLGKQLH 165 (514)
Q Consensus 149 l~~~~~~---------------------------------------------------------------~~~~~a~~~~ 165 (514)
+..+.+. ++.++|...+
T Consensus 420 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~ 499 (987)
T PRK09782 420 ASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAW 499 (987)
T ss_pred HHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHH
Confidence 2222222 3444455544
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH
Q 040365 166 GCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMD--LHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNS 243 (514)
Q Consensus 166 ~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~--~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 243 (514)
....... |+......+...+...|++++|...|+++. .++...+..+...+.+.|+.++|...|++..+.. |+.
T Consensus 500 ~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~ 575 (987)
T PRK09782 500 LQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGD 575 (987)
T ss_pred HHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--Ccc
Confidence 4444432 343333334444567888888888888765 2344556667777888888888888888887753 443
Q ss_pred -HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHH
Q 040365 244 -VAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISNMH-AGP-TENVWLTLLSA 320 (514)
Q Consensus 244 -~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~ 320 (514)
..+..+.......|++++|...++...+ +.|+...|..+..++.+.|+.++|...+++.. ..| +...+..+..+
T Consensus 576 ~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~a 652 (987)
T PRK09782 576 NALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYA 652 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 2333344445566999999999988863 46778888899999999999999999998863 334 56778888889
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHhCC
Q 040365 321 CRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRNKG 375 (514)
Q Consensus 321 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 375 (514)
+...|+.++|+..++++++.+|+++..+..+..+|...|++++|...+++..+..
T Consensus 653 L~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 653 LWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999887544
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.70 E-value=5e-13 Score=141.23 Aligned_cols=359 Identities=14% Similarity=0.067 Sum_probs=274.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChh-hHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 040365 9 WNTVIVGLARNGLYEEALNIVRQMGNVNLKPDSF-TLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSSLINMYA 87 (514)
Q Consensus 9 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 87 (514)
|...| ...+.|+++.|+..|++..+. .|+.. ....++..+...|+.++|...++..+.. -+.......++...|.
T Consensus 38 y~~ai-i~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~ 113 (822)
T PRK14574 38 YDSLI-IRARAGDTAPVLDYLQEESKA--GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYR 113 (822)
T ss_pred HHHHH-HHHhCCCHHHHHHHHHHHHhh--CccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHH
Confidence 44444 467889999999999999875 35542 2227788888889999999999998821 1222333344466899
Q ss_pred HCCCHHHHHHHHccCCC--C-ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHH
Q 040365 88 KCARVEDSHRLFCLLPV--K-DAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLGKQL 164 (514)
Q Consensus 88 ~~g~~~~A~~~f~~~~~--~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 164 (514)
..|++++|.++|+++.+ | |...+..++..|.+.++.++|++.++++... .|+...+..++..+...++..+|.+.
T Consensus 114 ~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~ 191 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQA 191 (822)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHH
Confidence 99999999999999873 2 5566778889999999999999999999775 57766665555555556667669999
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCC----------------------------------------
Q 040365 165 HGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMD---------------------------------------- 204 (514)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~---------------------------------------- 204 (514)
++++++.. +.+...+..++....+.|-...|.++..+-+
T Consensus 192 ~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~a 270 (822)
T PRK14574 192 SSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKA 270 (822)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHH
Confidence 99999885 5667777777888887777766655554332
Q ss_pred --------C-----CCh-hHHH----HHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 040365 205 --------L-----HDI-VSWT----AVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYF 266 (514)
Q Consensus 205 --------~-----~d~-~~~~----~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 266 (514)
. |.. ..|. =.+-++...|++.++++.|+.|...|.+.-..+-..+..+|...+.+++|..++
T Consensus 271 la~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~ 350 (822)
T PRK14574 271 LADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPIL 350 (822)
T ss_pred HHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 0 100 0111 134466778999999999999999886644457889999999999999999999
Q ss_pred HHhHHhcC----CCCCHhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC---------------CH-HHHHHHHHHHHhcC
Q 040365 267 NSMTKDYG----IAPSFEHYAAVADLLGRAGKLQEAYEFISNMHA-GP---------------TE-NVWLTLLSACRVHK 325 (514)
Q Consensus 267 ~~m~~~~~----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~p---------------~~-~~~~~ll~~~~~~~ 325 (514)
+.+....+ ..++......|.-+|...+++++|..+++++.. .| |- .....++..+.-.|
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~g 430 (822)
T PRK14574 351 SSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALN 430 (822)
T ss_pred HHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcC
Confidence 99866432 223455567889999999999999999998742 12 21 23344567788999
Q ss_pred CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHhC
Q 040365 326 NVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRNK 374 (514)
Q Consensus 326 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 374 (514)
++.+|++.++++....|.|......++.++...|...+|.+.++.....
T Consensus 431 dl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 431 DLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999776554
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.66 E-value=9.3e-13 Score=142.02 Aligned_cols=347 Identities=12% Similarity=0.029 Sum_probs=258.7
Q ss_pred CChhHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHh-C-CCCchhHHHHHHHHHHHCCCHH---H
Q 040365 20 GLYEEALNIVRQMGNVNLKPDSFTLSSVLPIFADYVDVIKGKEIHGYAIRH-G-LDANVCIGSSLINMYAKCARVE---D 94 (514)
Q Consensus 20 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g-~~~~~~~~~~li~~~~~~g~~~---~ 94 (514)
+...++...++.|.+.. +-+....--+--...+.|+.++|.+++...... + -..+....+-|+..|.+.+.+. .
T Consensus 356 ~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 434 (987)
T PRK09782 356 RNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAK 434 (987)
T ss_pred CchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHH
Confidence 44455555555565541 113333333333445778889999998888762 1 1234556668888888887733 3
Q ss_pred HHHHHc-------------------------cCC---CC--ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHH
Q 040365 95 SHRLFC-------------------------LLP---VK--DAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVS 144 (514)
Q Consensus 95 A~~~f~-------------------------~~~---~~--d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 144 (514)
|..+-. ... .+ +...|..+...+.. +++++|+..|.+.... .|+...
T Consensus 435 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~ 511 (987)
T PRK09782 435 VAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQ 511 (987)
T ss_pred HHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHH
Confidence 322211 111 12 56677888877776 8999999988887764 477665
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCChhHHH---HHHHHHHhC
Q 040365 145 FSSIMPACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMDLHDIVSWT---AVIMGNALH 221 (514)
Q Consensus 145 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~d~~~~~---~li~~~~~~ 221 (514)
...+..++...|++++|...+..+... +|+...+..+...+.+.|+.++|...|++....+...++ .+.......
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~ 589 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIP 589 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhC
Confidence 555566667899999999999987654 344445667788899999999999999887644332233 333344456
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHhcCCHHHHHH
Q 040365 222 GNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAP-SFEHYAAVADLLGRAGKLQEAYE 300 (514)
Q Consensus 222 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~ 300 (514)
|++++|+..|++..+. .|+...+..+..++.+.|+.++|...++.... ..| +...+..+...+...|++++|.+
T Consensus 590 Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~ 664 (987)
T PRK09782 590 GQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALE---LEPNNSNYQAALGYALWDSGDIAQSRE 664 (987)
T ss_pred CCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999874 67888899999999999999999999999864 466 57788888899999999999999
Q ss_pred HHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHhCCCc
Q 040365 301 FISNMH-AGP-TENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRNKGMK 377 (514)
Q Consensus 301 ~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 377 (514)
.+++.. ..| +...+..+..++...|++++|+..++++++++|+++.+.........+..+++.|.+-+++--.-.+.
T Consensus 665 ~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 665 MLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 999863 334 67889999999999999999999999999999999999989999999999999999988776554443
No 26
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=4.4e-12 Score=117.84 Aligned_cols=332 Identities=16% Similarity=0.168 Sum_probs=244.7
Q ss_pred CCCcchHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 040365 3 VSDLVSWNTVIVGLARNGLYEEALNIVRQMGNVNLKPDSFTLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSSL 82 (514)
Q Consensus 3 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 82 (514)
.++..++..||.|+++-...+.|.+++++-.....+.+..+||.+|.+-.- ..++.+..+|+...+.||..|+|++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhHHHH
Confidence 456789999999999999999999999999988889999999999987653 3348899999999999999999999
Q ss_pred HHHHHHCCCHHHHHHHH----ccCC----CCChhHHHHHHHHHHHCCChhH-HHHHHHHHHHC----CCC---C-CHHHH
Q 040365 83 INMYAKCARVEDSHRLF----CLLP----VKDAISWNSIIAGCVQNGLFDE-GLKFFRQMLIA----KIK---P-RHVSF 145 (514)
Q Consensus 83 i~~~~~~g~~~~A~~~f----~~~~----~~d~~~~~~li~~~~~~g~~~~-A~~l~~~m~~~----g~~---p-~~~t~ 145 (514)
+.+.++.|+++.|++.+ .+|+ +|...+|..+|..+.+.+++.+ |..++.+.... .++ | |..-|
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 99999999988766544 4454 7899999999999999888754 44455554431 222 2 45667
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcC----CCCc---HHHHHHHHHHHHhcCCHHHHHHHHHhCC----CCChhHHHHH
Q 040365 146 SSIMPACAHLTTLHLGKQLHGCIIRNG----FDDN---MFIASSLLDMYAKCGNIRLARCIFDKMD----LHDIVSWTAV 214 (514)
Q Consensus 146 ~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~y~k~g~~~~A~~~~~~m~----~~d~~~~~~l 214 (514)
.+.+..|.+..+.+.|.+++..+.... +.|+ .+.|..+....+....++.-...|+.|. -|+..+...+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 899999999999999999998765431 2333 3456678888889999999999999986 3466677778
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC---------CHHH-----HHHHH-------HHhHHhc
Q 040365 215 IMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAG---------LIDK-----AWSYF-------NSMTKDY 273 (514)
Q Consensus 215 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g---------~~~~-----a~~~~-------~~m~~~~ 273 (514)
+.+....|+++-.-+++.++...|..-+...-.-++...++.. ++.. |..++ .++.
T Consensus 440 lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r--- 516 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQR--- 516 (625)
T ss_pred HHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHH---
Confidence 8888888988888888888887764433333333333333322 0000 11111 1121
Q ss_pred CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 040365 274 GIAPSFEHYAAVADLLGRAGKLQEAYEFISNM-------HAGPTENVWLTLLSACRVHKNVELAGKVAEKIFMID 341 (514)
Q Consensus 274 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 341 (514)
.........++..-.+.|.|+.++|.+++.-+ +..|......-|+.+..+.++...|..+++-+...+
T Consensus 517 ~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 517 AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 23345567788888899999999999988755 223555455566777788888888888888876655
No 27
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.60 E-value=5.6e-15 Score=139.89 Aligned_cols=255 Identities=17% Similarity=0.132 Sum_probs=110.6
Q ss_pred HHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHH-HHHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC
Q 040365 113 IIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSI-MPACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCG 191 (514)
Q Consensus 113 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g 191 (514)
+...+.+.|++++|++++++......+|+...|..+ ...+-..++.+.|.+.++.+.+.+ +.+...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-cccc
Confidence 355566777777777777554443223444444433 334455677777777777777665 2355566666666 6788
Q ss_pred CHHHHHHHHHhCC--CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 040365 192 NIRLARCIFDKMD--LHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDG-VKPNSVAFVAVLTACSHAGLIDKAWSYFNS 268 (514)
Q Consensus 192 ~~~~A~~~~~~m~--~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 268 (514)
++++|.++++..- .++...+..++..+.+.|+++++.++++++.... .+++...|..+...+.+.|+.++|...++.
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8888888877663 3456677788888889999999999999977533 345667778888888999999999999998
Q ss_pred hHHhcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 040365 269 MTKDYGIAP-SFEHYAAVADLLGRAGKLQEAYEFISNMH--AGPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNM 345 (514)
Q Consensus 269 m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 345 (514)
..+. .| +......++..+...|+.+++.++++... .+.|...|..+..++...|+.+.|...++++...+|+|+
T Consensus 172 al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 172 ALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 8754 66 57788889999999999999877776653 134566789999999999999999999999999999999
Q ss_pred chHHHHHHHHHHccChhHHHHHHHHHH
Q 040365 346 GAYVILSNTYAAARRWKDAASLRVFMR 372 (514)
Q Consensus 346 ~~~~~l~~~~~~~g~~~~a~~~~~~m~ 372 (514)
.....++.++...|+.++|.+++.+.-
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 999999999999999999999987654
No 28
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.58 E-value=1e-11 Score=125.59 Aligned_cols=331 Identities=14% Similarity=0.150 Sum_probs=243.0
Q ss_pred HhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHCCCHHHHHHHHcc---CCCCChhHHHHHHHHHHHCCChhHHH
Q 040365 51 FADYVDVIKGKEIHGYAIRHGLDANVCIGSSLINMYAKCARVEDSHRLFCL---LPVKDAISWNSIIAGCVQNGLFDEGL 127 (514)
Q Consensus 51 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~---~~~~d~~~~~~li~~~~~~g~~~~A~ 127 (514)
....|++++|..++.++++.. +.....|-+|...|-..|+++++...+-. +...|..-|-.+.....+.|.+++|.
T Consensus 149 lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHH
Confidence 333488999999999888876 66778888899999999998888776643 33557788888888888889999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHHHHHH----HHHHHHhcCCHHHHHHHHHhC
Q 040365 128 KFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLGKQLHGCIIRNGFDDNMFIASS----LLDMYAKCGNIRLARCIFDKM 203 (514)
Q Consensus 128 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----li~~y~k~g~~~~A~~~~~~m 203 (514)
-.|.+..+.. +++...+---...|-+.|+...|..-+.++....-+.|..-... .+..|...++-+.|.+.++..
T Consensus 228 ~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 228 YCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9998888763 44544455556678888888888888888887653333333333 345566677778888888776
Q ss_pred CC--C---ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHH--------------------------HHHHHH
Q 040365 204 DL--H---DIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAF--------------------------VAVLTA 252 (514)
Q Consensus 204 ~~--~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~--------------------------~~ll~a 252 (514)
.. . +...++.++..|.+...++.|......+......||..-+ .-+.-+
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ic 386 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMIC 386 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhh
Confidence 53 2 3456788888888888888888888887762222222111 112223
Q ss_pred HHccCCHHHHHHHHHHhHHhcCCCC--CHhHHHHHHHHHHhcCCHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCCH
Q 040365 253 CSHAGLIDKAWSYFNSMTKDYGIAP--SFEHYAAVADLLGRAGKLQEAYEFISNMHAG---PTENVWLTLLSACRVHKNV 327 (514)
Q Consensus 253 ~~~~g~~~~a~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---p~~~~~~~ll~~~~~~~~~ 327 (514)
+.+....+....+..-..+ ..+.| ++..|.-+.++|...|++.+|+++|..+... .+...|..+..++...|.+
T Consensus 387 L~~L~~~e~~e~ll~~l~~-~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVE-DNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhcccccchHHHHHHHHHH-hcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 3344433333333333323 35444 6788999999999999999999999988533 3577999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHhCCCccCCcccE
Q 040365 328 ELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRNKGMKKTPACSW 384 (514)
Q Consensus 328 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~ 384 (514)
+.|.+.+++++.+.|++..+-..|+..|.+.|+.++|.++++.|..-+-..-+++.|
T Consensus 466 e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 466 EEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred HHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 999999999999999999999999999999999999999999887433223345555
No 29
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.58 E-value=9.9e-12 Score=115.54 Aligned_cols=317 Identities=17% Similarity=0.207 Sum_probs=195.1
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHH--hCCCChHHH-HHHHHHHHHhCCCCchhHHHHH
Q 040365 6 LVSWNTVIVGLARNGLYEEALNIVRQMGNVNLKPDSFTLSSVLPIF--ADYVDVIKG-KEIHGYAIRHGLDANVCIGSSL 82 (514)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~--~~~~~~~~a-~~~~~~~~~~g~~~~~~~~~~l 82 (514)
+++=|.|+. ....|..+++.-+|+.|...|+..+...-..++... -...++.-+ .+-|-.|.+.| +.+..+|
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--- 190 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence 445566554 445688889999999999888776665544444432 222333222 23344455544 2222332
Q ss_pred HHHHHHCCCHHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHH
Q 040365 83 INMYAKCARVEDSHRLFCLLPVKDAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLGK 162 (514)
Q Consensus 83 i~~~~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 162 (514)
|.|++.+ ++-+...+...++.+||.|.++-...+.|.++|++-.....+.+..+|+.+|.+-+ +..++
T Consensus 191 -----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K 258 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGK 258 (625)
T ss_pred -----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccH
Confidence 3455544 44445556778999999999999999999999999999888999999999998765 34458
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH----hCC----CCChhHHHHHHHHHHhCCChHH-HHHHHHH
Q 040365 163 QLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFD----KMD----LHDIVSWTAVIMGNALHGNAHD-AISLFEQ 233 (514)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~----~m~----~~d~~~~~~li~~~~~~g~~~~-A~~l~~~ 233 (514)
++..+|+...+.||..++|+++.+.++.|+++.|++.+- +|. +|...+|..+|..+.+.++..+ |..++.+
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~d 338 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIND 338 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHH
Confidence 899999999999999999999999999999988765433 232 5566666666666666555433 3333333
Q ss_pred HHH----cCCCC----CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcC---CCCC---HhHHHHHHHHHHhcCCHHHHH
Q 040365 234 MEK----DGVKP----NSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYG---IAPS---FEHYAAVADLLGRAGKLQEAY 299 (514)
Q Consensus 234 m~~----~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~---~~p~---~~~~~~li~~~~~~g~~~~A~ 299 (514)
+.. ..++| |..-|...+..|.+..+.+.|.++...+....+ +.|+ ..-|..+.++.+....++.-+
T Consensus 339 I~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~ 418 (625)
T KOG4422|consen 339 IQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTL 418 (625)
T ss_pred HHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 11222 234455666666666666666665554422111 1122 122344455555555555555
Q ss_pred HHHHhCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040365 300 EFISNMHA---GPTENVWLTLLSACRVHKNVELAGKVAEKIFM 339 (514)
Q Consensus 300 ~~~~~m~~---~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 339 (514)
..++.|.- -|+..+-..++.+....+.++..-+++..+..
T Consensus 419 ~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~ 461 (625)
T KOG4422|consen 419 KWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKE 461 (625)
T ss_pred HHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHH
Confidence 55555531 14444445555555555555555555544433
No 30
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.54 E-value=1.4e-11 Score=122.31 Aligned_cols=278 Identities=9% Similarity=-0.031 Sum_probs=200.5
Q ss_pred CCChHHHHHHHHHHHHhCCCCchhHHHHH-HHHHHHCCCHHHHHHHHccCCC--CChhHHH--HHHHHHHHCCChhHHHH
Q 040365 54 YVDVIKGKEIHGYAIRHGLDANVCIGSSL-INMYAKCARVEDSHRLFCLLPV--KDAISWN--SIIAGCVQNGLFDEGLK 128 (514)
Q Consensus 54 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-i~~~~~~g~~~~A~~~f~~~~~--~d~~~~~--~li~~~~~~g~~~~A~~ 128 (514)
.|+++.|++......+.. +++.++-.+ .....+.|+.+.|.+.|.++.+ |+....- .....+...|++++|+.
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 578888887766654432 223333333 3344677888888888877764 2322111 23566777888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcH-------HHHHHHHHHHHhcCCHHHHHHHHH
Q 040365 129 FFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLGKQLHGCIIRNGFDDNM-------FIASSLLDMYAKCGNIRLARCIFD 201 (514)
Q Consensus 129 l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~y~k~g~~~~A~~~~~ 201 (514)
.++++.+.. +-+...+..+...+.+.|+++.+.+++..+.+.+..++. ..+..++....+..+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 888887754 334556667777888888888888888888877643322 233445555555666777788888
Q ss_pred hCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-
Q 040365 202 KMD---LHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAP- 277 (514)
Q Consensus 202 ~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p- 277 (514)
.++ ..++.....+..++...|+.++|.+++++..+. .||... .++.+....++.+++.+..+...+. .|
T Consensus 254 ~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~---~P~ 326 (398)
T PRK10747 254 NQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ---HGD 326 (398)
T ss_pred hCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhh---CCC
Confidence 876 347778888999999999999999999988874 445421 2333444568999999999988765 45
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 040365 278 SFEHYAAVADLLGRAGKLQEAYEFISNMH-AGPTENVWLTLLSACRVHKNVELAGKVAEKIFMID 341 (514)
Q Consensus 278 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 341 (514)
|+..+.++...+.+.|++++|.+.|+... ..|+...+..|...+...|+.++|.+++++.+.+-
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 66778899999999999999999999864 56999998999999999999999999999987653
No 31
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.53 E-value=6.7e-11 Score=118.00 Aligned_cols=282 Identities=11% Similarity=-0.020 Sum_probs=158.8
Q ss_pred CCCChHHHHHHHHHHHHhCCCCch-hHHHHHHHHHHHCCCHHHHHHHHccCCC--CCh--hHHHHHHHHHHHCCChhHHH
Q 040365 53 DYVDVIKGKEIHGYAIRHGLDANV-CIGSSLINMYAKCARVEDSHRLFCLLPV--KDA--ISWNSIIAGCVQNGLFDEGL 127 (514)
Q Consensus 53 ~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~f~~~~~--~d~--~~~~~li~~~~~~g~~~~A~ 127 (514)
..|+++.|.+.+....+.. |+. ..+-.....+.+.|+.+.|.+.|.+..+ |+. ...-+....+.+.|+++.|+
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 4577777777776665543 332 2233334556667777777777766421 222 22333456666777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHHHH-------HHHHHHHHhcCCHHHHHHHH
Q 040365 128 KFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLGKQLHGCIIRNGFDDNMFIA-------SSLLDMYAKCGNIRLARCIF 200 (514)
Q Consensus 128 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~li~~y~k~g~~~~A~~~~ 200 (514)
+.++++.+.. +-+...+..+...+.+.|+++.+.+.+..+.+.+..+..... ..+++.-......+...+.+
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 7777777653 234445666677777777777777777777776543322221 11111111222233444444
Q ss_pred HhCCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHccCCHHHHHHHHHHhHHhcC
Q 040365 201 DKMDL---HDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAF---VAVLTACSHAGLIDKAWSYFNSMTKDYG 274 (514)
Q Consensus 201 ~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 274 (514)
+..+. .+...+..+...+...|+.++|.+++++..+. .||.... ..........++.+.+.+.++...+...
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p 330 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD 330 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC
Confidence 44442 36666777777777777777777777777664 3443311 1111122234566666666666554322
Q ss_pred CCCCHhHHHHHHHHHHhcCCHHHHHHHHHh--C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040365 275 IAPSFEHYAAVADLLGRAGKLQEAYEFISN--M-HAGPTENVWLTLLSACRVHKNVELAGKVAEKIFM 339 (514)
Q Consensus 275 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~--m-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 339 (514)
-.|+.....++...+.+.|++++|.+.|+. . ...||...+..+...+.+.|+.++|.+++++.+.
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 222214455666666677777777777662 2 3356666666666666677777777666666543
No 32
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.51 E-value=1.4e-13 Score=130.36 Aligned_cols=254 Identities=16% Similarity=0.086 Sum_probs=80.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCChhhH-HHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHCC
Q 040365 12 VIVGLARNGLYEEALNIVRQMGNVNLKPDSFTL-SSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSSLINMYAKCA 90 (514)
Q Consensus 12 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 90 (514)
+...+.+.|++++|+++++.-.....+|+...| ..+.......++.+.|.+.++.+...+ +.++..+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-cccc
Confidence 345566677777777777544333223433333 333334445677777777777777665 2345556666666 5667
Q ss_pred CHHHHHHHHccCC--CCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 040365 91 RVEDSHRLFCLLP--VKDAISWNSIIAGCVQNGLFDEGLKFFRQMLIAK-IKPRHVSFSSIMPACAHLTTLHLGKQLHGC 167 (514)
Q Consensus 91 ~~~~A~~~f~~~~--~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 167 (514)
+.++|.+++...- .++...+..++..+.+.++++++.+++++..... .+++...|..+...+.+.|+.++|...+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7777776665542 2345556666677777777777777777765432 234555566666666677777777777777
Q ss_pred HHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH
Q 040365 168 IIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMD---LHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSV 244 (514)
Q Consensus 168 ~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 244 (514)
.++.. |.|..+.+.++..+...|+.+++.+++.... ..|...|..+..+|...|+.++|+..|++..... +.|..
T Consensus 172 al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~ 249 (280)
T PF13429_consen 172 ALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPL 249 (280)
T ss_dssp HHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HH
T ss_pred HHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-ccccc
Confidence 76654 3346666666767776776666555554443 3355566666666666666666666666666531 22455
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHh
Q 040365 245 AFVAVLTACSHAGLIDKAWSYFNSM 269 (514)
Q Consensus 245 t~~~ll~a~~~~g~~~~a~~~~~~m 269 (514)
+...+..++...|+.++|.++..+.
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHT---------------
T ss_pred ccccccccccccccccccccccccc
Confidence 5566666666666666666665554
No 33
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.50 E-value=5.2e-11 Score=118.16 Aligned_cols=275 Identities=9% Similarity=0.009 Sum_probs=210.9
Q ss_pred CCCHHHHHHHHccCCCC--C-hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHH--HHHHHHhccCChHHHHH
Q 040365 89 CARVEDSHRLFCLLPVK--D-AISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFS--SIMPACAHLTTLHLGKQ 163 (514)
Q Consensus 89 ~g~~~~A~~~f~~~~~~--d-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~ 163 (514)
.|+++.|++.+...++. + ...|-.......+.|++++|.+.|.++.+. .|+...+. .....+...|+++.|.+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 69999999999876643 2 333433345558899999999999999874 56654443 33567888999999999
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCh-----------hHHHHHHHHHHhCCChHHHHHHHH
Q 040365 164 LHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMDLHDI-----------VSWTAVIMGNALHGNAHDAISLFE 232 (514)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~d~-----------~~~~~li~~~~~~g~~~~A~~l~~ 232 (514)
.++.+.+.. +.+..+...+...|.+.|++++|.+++..+.+... .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999999886 66788899999999999999999999998874321 134444444444555666677777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-C
Q 040365 233 QMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISNMH-AGP-T 310 (514)
Q Consensus 233 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~ 310 (514)
.+... .+.+......+..++...|+.++|..+++...+. .|+.... ++.+....++.+++.+.++... ..| |
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 66443 3446677888999999999999999999988653 4555322 2233335599999999998764 335 5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHh
Q 040365 311 ENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRN 373 (514)
Q Consensus 311 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 373 (514)
......+...|...+++++|...|+++.+..|++ ..+..|..++.+.|+.++|.+++++-..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5668889999999999999999999999999875 5688999999999999999999986543
No 34
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.49 E-value=1.2e-10 Score=109.01 Aligned_cols=340 Identities=14% Similarity=0.137 Sum_probs=216.0
Q ss_pred HHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC------------chhHHHH
Q 040365 14 VGLARNGLYEEALNIVRQMGNVNLKPDSFTLSSVLPIFADYVDVIKGKEIHGYAIRHGLDA------------NVCIGSS 81 (514)
Q Consensus 14 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~------------~~~~~~~ 81 (514)
--+.+.|++++|+..|+...+. .||-.+-..++-.+...|+.++.++.|..|+.....+ +....|.
T Consensus 284 vtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~e 361 (840)
T KOG2003|consen 284 VTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNE 361 (840)
T ss_pred eeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHH
Confidence 3467789999999999988775 4776654444444555688899999999887653222 2222222
Q ss_pred HH-----HHHHHCCC--HH----HHHHHHccCCCCChhH---HHH------------------HHHHHHHCCChhHHHHH
Q 040365 82 LI-----NMYAKCAR--VE----DSHRLFCLLPVKDAIS---WNS------------------IIAGCVQNGLFDEGLKF 129 (514)
Q Consensus 82 li-----~~~~~~g~--~~----~A~~~f~~~~~~d~~~---~~~------------------li~~~~~~g~~~~A~~l 129 (514)
-| .-.-+... .+ .|.++..-...||-.. |.. -..-|.++|+++.|+++
T Consensus 362 ai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aiei 441 (840)
T KOG2003|consen 362 AIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEI 441 (840)
T ss_pred HHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHH
Confidence 22 11111111 11 1222222222332110 110 12347889999999998
Q ss_pred HHHHHHCCCCCCHHHHH--HHHHHH----------------------------------hccCChHHHHHHHHHHHHcCC
Q 040365 130 FRQMLIAKIKPRHVSFS--SIMPAC----------------------------------AHLTTLHLGKQLHGCIIRNGF 173 (514)
Q Consensus 130 ~~~m~~~g~~p~~~t~~--~ll~~~----------------------------------~~~~~~~~a~~~~~~~~~~~~ 173 (514)
++-..+..-+.-...-+ +++... ...|++++|.+.+.+.+...-
T Consensus 442 lkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nda 521 (840)
T KOG2003|consen 442 LKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDA 521 (840)
T ss_pred HHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCch
Confidence 88776543221111111 111111 123566666666666655432
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 040365 174 DDNMFIASSLLDMYAKCGNIRLARCIFDKMD---LHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVL 250 (514)
Q Consensus 174 ~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 250 (514)
.-....|| +.-.|-+.|++++|.+.|-++. ..++...-.+.+.|-...++..|++++-+.... ++.|...+.-|.
T Consensus 522 sc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~ 599 (840)
T KOG2003|consen 522 SCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLA 599 (840)
T ss_pred HHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHH
Confidence 22222222 2334566777777777776653 345555556666777777777777777665542 344556777788
Q ss_pred HHHHccCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHH-HhcCCH
Q 040365 251 TACSHAGLIDKAWSYFNSMTKDYGIAP-SFEHYAAVADLLGRAGKLQEAYEFISNMH-AGPTENVWLTLLSAC-RVHKNV 327 (514)
Q Consensus 251 ~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~-~~~~~~ 327 (514)
..|-+.|+-.+|.+.+-. .+..-| +.++..-|..-|....-+++|..+|++.. ..|+..-|..++..| ++.|++
T Consensus 600 dlydqegdksqafq~~yd---syryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgny 676 (840)
T KOG2003|consen 600 DLYDQEGDKSQAFQCHYD---SYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNY 676 (840)
T ss_pred HHhhcccchhhhhhhhhh---cccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccH
Confidence 888888888888877653 234444 78888888888888888899999998864 679999999988765 678999
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHccC
Q 040365 328 ELAGKVAEKIFMIDPNNMGAYVILSNTYAAARR 360 (514)
Q Consensus 328 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 360 (514)
+.|..+++......|.|......|...+...|.
T Consensus 677 qka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 677 QKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 999999999999999999999999998887774
No 35
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.48 E-value=7.2e-11 Score=117.78 Aligned_cols=291 Identities=12% Similarity=0.027 Sum_probs=209.9
Q ss_pred HHHHHHHHH--hcCChhHHHHHHHHHhhCCCCCChh-hHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 040365 9 WNTVIVGLA--RNGLYEEALNIVRQMGNVNLKPDSF-TLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSSLINM 85 (514)
Q Consensus 9 ~~~li~~~~--~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 85 (514)
...+..|.. ..|+++.|.+.+....+. .|++. .+-....+..+.|+.+.+.+.+..+.+..-.+...+.-.....
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l 162 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRI 162 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHH
Confidence 344444443 369999999999887765 45543 3444566777889999999999998876422223455556888
Q ss_pred HHHCCCHHHHHHHHccCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHH-HHHHHH---hccCCh
Q 040365 86 YAKCARVEDSHRLFCLLPV---KDAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFS-SIMPAC---AHLTTL 158 (514)
Q Consensus 86 ~~~~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~ll~~~---~~~~~~ 158 (514)
+...|+.+.|...++.+.+ .+...+..+...+.+.|++++|.+++..+.+.++. +...+. .-..+. ...+..
T Consensus 163 ~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~ 241 (409)
T TIGR00540 163 LLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMA 241 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998863 36678889999999999999999999999998754 333331 111221 122222
Q ss_pred HHHHHHHHHHHHcC---CCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCC--CChhH---HHHHHHHHHhCCChHHHHHH
Q 040365 159 HLGKQLHGCIIRNG---FDDNMFIASSLLDMYAKCGNIRLARCIFDKMDL--HDIVS---WTAVIMGNALHGNAHDAISL 230 (514)
Q Consensus 159 ~~a~~~~~~~~~~~---~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~--~d~~~---~~~li~~~~~~g~~~~A~~l 230 (514)
+.+.+.+..+.+.. .+.+...+..+...+...|+.++|.+++++..+ ||... +..........++.+.+++.
T Consensus 242 ~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~ 321 (409)
T TIGR00540 242 DEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKL 321 (409)
T ss_pred hcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHH
Confidence 33333444444432 124788899999999999999999999999863 43331 12222233446788899999
Q ss_pred HHHHHHcCCCCCHH---HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 040365 231 FEQMEKDGVKPNSV---AFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISNM 305 (514)
Q Consensus 231 ~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 305 (514)
+++..+. .|+.. ...++...|.+.|++++|.++|+... .....|+...+..+...+.+.|+.++|.+++++.
T Consensus 322 ~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~-a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 322 IEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVA-ACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhH-HhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9887764 55554 45578888999999999999999532 2356899988999999999999999999999863
No 36
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.47 E-value=3e-10 Score=115.92 Aligned_cols=367 Identities=13% Similarity=0.036 Sum_probs=263.6
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHhhCCCC--CChhhHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHH
Q 040365 4 SDLVSWNTVIVGLARNGLYEEALNIVRQMGNVNLK--PDSFTLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSS 81 (514)
Q Consensus 4 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 81 (514)
.|++..|-|..-|.-.|+++.++.+...+...... --..+|-.+.+++-..|++++|...|.+..+..-..-+..+--
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~G 347 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVG 347 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccc
Confidence 47788889999999999999999999988764311 1123577788999999999999999988887642222444566
Q ss_pred HHHHHHHCCCHHHHHHHHccCCC--C-ChhHHHHHHHHHHHCC----ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 040365 82 LINMYAKCARVEDSHRLFCLLPV--K-DAISWNSIIAGCVQNG----LFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAH 154 (514)
Q Consensus 82 li~~~~~~g~~~~A~~~f~~~~~--~-d~~~~~~li~~~~~~g----~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 154 (514)
|..+|.+.|+++.|...|+.+.. | +..+.-.|...|+..+ ..+.|..++.+..+. .+.|...|..+...+-.
T Consensus 348 lgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~-~~~d~~a~l~laql~e~ 426 (1018)
T KOG2002|consen 348 LGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ-TPVDSEAWLELAQLLEQ 426 (1018)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc-ccccHHHHHHHHHHHHh
Confidence 88999999999999999998763 3 4566667777777765 456677777666554 24566677666665544
Q ss_pred cCChHHHHHHHHH----HHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCC-------CCh------hHHHHHHHH
Q 040365 155 LTTLHLGKQLHGC----IIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMDL-------HDI------VSWTAVIMG 217 (514)
Q Consensus 155 ~~~~~~a~~~~~~----~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~-------~d~------~~~~~li~~ 217 (514)
. +...+..++.. +...+-++.+.+.|.+...+...|++++|...|..... +|. .+-..+...
T Consensus 427 ~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl 505 (1018)
T KOG2002|consen 427 T-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARL 505 (1018)
T ss_pred c-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHH
Confidence 3 33333554443 34456567888999999999999999999999987642 222 122234455
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHH
Q 040365 218 NALHGNAHDAISLFEQMEKDGVKPNSV-AFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQ 296 (514)
Q Consensus 218 ~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 296 (514)
+-..++.+.|.+.|...... .|+-+ .|..++......+...+|...++.... ....++..++.+...+.+...+.
T Consensus 506 ~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~--~d~~np~arsl~G~~~l~k~~~~ 581 (1018)
T KOG2002|consen 506 LEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALN--IDSSNPNARSLLGNLHLKKSEWK 581 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHh--cccCCcHHHHHHHHHHHhhhhhc
Confidence 55678899999999999885 56654 344444333345778888888888765 33445566666777887777777
Q ss_pred HHHHHHHhC----CCCCCHHHHHHHHHHHH------------hcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccC
Q 040365 297 EAYEFISNM----HAGPTENVWLTLLSACR------------VHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARR 360 (514)
Q Consensus 297 ~A~~~~~~m----~~~p~~~~~~~ll~~~~------------~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 360 (514)
-|.+-|+.+ ...+|+.+.-+|.+.|. ..+..+.|+++|.+++..+|.|..+-+.++-+++..|+
T Consensus 582 ~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~ 661 (1018)
T KOG2002|consen 582 PAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGR 661 (1018)
T ss_pred ccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccC
Confidence 777744443 33467777667766553 23456788889999999999998888888889999999
Q ss_pred hhHHHHHHHHHHhCCC
Q 040365 361 WKDAASLRVFMRNKGM 376 (514)
Q Consensus 361 ~~~a~~~~~~m~~~g~ 376 (514)
+.+|..+|.+.++...
T Consensus 662 ~~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 662 FSEARDIFSQVREATS 677 (1018)
T ss_pred chHHHHHHHHHHHHHh
Confidence 9999999999988765
No 37
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.47 E-value=2.4e-09 Score=104.88 Aligned_cols=370 Identities=12% Similarity=0.046 Sum_probs=286.6
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 040365 7 VSWNTVIVGLARNGLYEEALNIVRQMGNVNLKPDSFTLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSSLINMY 86 (514)
Q Consensus 7 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 86 (514)
.+|+.-...|.+.+.++-|..+|...++- .+-+...|......--..|..+.-..+++.++..- +.....|--...-+
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~ 594 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEK 594 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHH
Confidence 46777777888888888888888887764 23345566666665566788888888888888763 45556666667777
Q ss_pred HHCCCHHHHHHHHccCC---CCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHH
Q 040365 87 AKCARVEDSHRLFCLLP---VKDAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLGKQ 163 (514)
Q Consensus 87 ~~~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 163 (514)
-..|++..|+.+++..- ..+...|-+-+.....+.++++|..+|.+.... .|+...|.--+..---++..++|.+
T Consensus 595 w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~r 672 (913)
T KOG0495|consen 595 WKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALR 672 (913)
T ss_pred HhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHH
Confidence 77899999988877654 235667888888888899999999999888764 5666666555555556788899999
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCC--C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 040365 164 LHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMDL--H-DIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVK 240 (514)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 240 (514)
+++..++. ++.-.-.|-.+...|-+.++++.|++.|..-.+ | .+..|-.+...=-+.|..-.|..+|++....+ +
T Consensus 673 llEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-P 750 (913)
T KOG0495|consen 673 LLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-P 750 (913)
T ss_pred HHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-C
Confidence 99888876 455566777888888888999999988877652 2 45678777777778888999999999888764 3
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 040365 241 PNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISNMHAGPTENVWLTLLSA 320 (514)
Q Consensus 241 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~ 320 (514)
-|..-|...+..-.+.|..++|..+..+..++ ++.+...|..-|-+..+.++-..+.+-+++-. .|..+.-++...
T Consensus 751 k~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~l 826 (913)
T KOG0495|consen 751 KNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKL 826 (913)
T ss_pred CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHH
Confidence 36678888888889999999999988887664 44467788888888888888777766666654 456666777778
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHhCCCccCCcccEEEEC
Q 040365 321 CRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRNKGMKKTPACSWIEVK 388 (514)
Q Consensus 321 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~ 388 (514)
+....+++.|...|++....+|++..+|..+...+...|.-++-.+++.+.... .|..|..|..+.
T Consensus 827 fw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~avS 892 (913)
T KOG0495|consen 827 FWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAVS 892 (913)
T ss_pred HHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHh
Confidence 888899999999999999999999999999999999999999999999887654 366677886553
No 38
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.46 E-value=1.6e-11 Score=120.59 Aligned_cols=275 Identities=11% Similarity=0.017 Sum_probs=211.1
Q ss_pred CHHHHHHHHccCCC--CCh-hHHHHHHHHHHHCCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHhccCChHHHHHHH
Q 040365 91 RVEDSHRLFCLLPV--KDA-ISWNSIIAGCVQNGLFDEGLKFFRQMLIAK--IKPRHVSFSSIMPACAHLTTLHLGKQLH 165 (514)
Q Consensus 91 ~~~~A~~~f~~~~~--~d~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 165 (514)
+..+|...|..+++ +|. ....-+..+|...+++++|.++|+..++.. ..-+...|++++--+-+. .+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 46788888888663 233 334456788888999999999999887642 112556777777554321 122222
Q ss_pred H-HHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCCC---ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q 040365 166 G-CIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMDLH---DIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKP 241 (514)
Q Consensus 166 ~-~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 241 (514)
. .+++. -+..+.+|-++.++|.-.++.+.|++.|++...- ...+|+.+..-+.....+|.|...|+..+. +.|
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 2 22222 2556789999999999999999999999988633 567888887788888999999999998765 344
Q ss_pred CH-HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHH
Q 040365 242 NS-VAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAP-SFEHYAAVADLLGRAGKLQEAYEFISNMH--AGPTENVWLTL 317 (514)
Q Consensus 242 ~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l 317 (514)
.. -.|-.+...|.+.++++.|.-.|+... .+.| +.....++...+-+.|+.++|+++++++- .+.|+..--.-
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 43 456678888999999999999999775 6788 67777888888999999999999999863 23355554555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHhCC
Q 040365 318 LSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRNKG 375 (514)
Q Consensus 318 l~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 375 (514)
...+...+++++|.+.++++.++-|++...|..++..|-+.|+.+.|..-|.-+.+..
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 6667788999999999999999999999999999999999999999999998776543
No 39
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=1.6e-09 Score=102.11 Aligned_cols=314 Identities=12% Similarity=0.079 Sum_probs=221.8
Q ss_pred HHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHCCCHHHHHHHHccCCCCChhHH-HHHHHHHHHCCChhHHHH
Q 040365 50 IFADYVDVIKGKEIHGYAIRHGLDANVCIGSSLINMYAKCARVEDSHRLFCLLPVKDAISW-NSIIAGCVQNGLFDEGLK 128 (514)
Q Consensus 50 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~d~~~~-~~li~~~~~~g~~~~A~~ 128 (514)
.+.+.|....|...+...+.. -+..|.+-+....-.-+++.+..+....+..+...- --+..++....+.+++++
T Consensus 173 v~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~ 248 (559)
T KOG1155|consen 173 VLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQ 248 (559)
T ss_pred HHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555554432 123333333333334445555544444443211111 123455666667788888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCC--CCcHHHHHHHHHHHHhcCCHHH-HHHHHHhCCC
Q 040365 129 FFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLGKQLHGCIIRNGF--DDNMFIASSLLDMYAKCGNIRL-ARCIFDKMDL 205 (514)
Q Consensus 129 l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~y~k~g~~~~-A~~~~~~m~~ 205 (514)
-.......|++-+...-+....+.-...++++|+.+|+.+.+... -.|..+|+.++-.--.+..+.- |..++ .+.+
T Consensus 249 k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~-~idK 327 (559)
T KOG1155|consen 249 KKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVS-NIDK 327 (559)
T ss_pred HHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHH-Hhcc
Confidence 888888887765555555555556677889999999999988741 1255666666533222222222 22222 2233
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CHhHHH
Q 040365 206 HDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPN-SVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAP-SFEHYA 283 (514)
Q Consensus 206 ~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~ 283 (514)
--+.|...+.+-|+-.++.++|...|++..+. .|. ...|+.+..-|....+...|++-++..+ .+.| |-..|-
T Consensus 328 yR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv---di~p~DyRAWY 402 (559)
T KOG1155|consen 328 YRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV---DINPRDYRAWY 402 (559)
T ss_pred CCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHH---hcCchhHHHHh
Confidence 34456667777888899999999999999885 454 4668888889999999999999999886 5566 788999
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCh
Q 040365 284 AVADLLGRAGKLQEAYEFISNMH-AGP-TENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRW 361 (514)
Q Consensus 284 ~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 361 (514)
.|.++|.-.+...=|+-+|++.. .+| |...|.+|..+|.+.++.++|+..|.++...+..+...|+.|++.|-+.++.
T Consensus 403 GLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~ 482 (559)
T KOG1155|consen 403 GLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDL 482 (559)
T ss_pred hhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhH
Confidence 99999999999999999999874 444 7899999999999999999999999999999877888999999999999999
Q ss_pred hHHHHHHHHHHh
Q 040365 362 KDAASLRVFMRN 373 (514)
Q Consensus 362 ~~a~~~~~~m~~ 373 (514)
++|.+.+++-.+
T Consensus 483 ~eAa~~yek~v~ 494 (559)
T KOG1155|consen 483 NEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHH
Confidence 999999987765
No 40
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.43 E-value=2.7e-10 Score=102.61 Aligned_cols=267 Identities=10% Similarity=0.119 Sum_probs=137.9
Q ss_pred cCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHhC-CC--CchhHHHHHHHHHHHCCCHHHH
Q 040365 19 NGLYEEALNIVRQMGNVNLKPDSFTLSSVLPIFADYVDVIKGKEIHGYAIRHG-LD--ANVCIGSSLINMYAKCARVEDS 95 (514)
Q Consensus 19 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~--~~~~~~~~li~~~~~~g~~~~A 95 (514)
++++++|.++|-+|.+.. +.+..+--++-+.+.+.|.++.|..+|+.+.++. +. .-..+...|..-|.+.|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 356777777777777632 2222344556666777777777777777776642 11 1112344566667777777777
Q ss_pred HHHHccCCCCC---hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHH----HHHHHHHHhccCChHHHHHHHHHH
Q 040365 96 HRLFCLLPVKD---AISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVS----FSSIMPACAHLTTLHLGKQLHGCI 168 (514)
Q Consensus 96 ~~~f~~~~~~d---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t----~~~ll~~~~~~~~~~~a~~~~~~~ 168 (514)
+.+|..+.+.+ ..+.-.|+..|-+..+|++|++.-+++...+-.+..+- |.-+...+....+++.|...+.+.
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 77777765432 23445567777777777777777776666543333221 222222333334445555555544
Q ss_pred HHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 040365 169 IRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMDLHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVA 248 (514)
Q Consensus 169 ~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 248 (514)
.+.+ +..+..--.+.+. +...|+++.|.+.++...+.+..--..+...
T Consensus 207 lqa~-~~cvRAsi~lG~v-------------------------------~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~ 254 (389)
T COG2956 207 LQAD-KKCVRASIILGRV-------------------------------ELAKGDYQKAVEALERVLEQNPEYLSEVLEM 254 (389)
T ss_pred HhhC-ccceehhhhhhHH-------------------------------HHhccchHHHHHHHHHHHHhChHHHHHHHHH
Confidence 4432 2222222233344 4445555555555555554432222234445
Q ss_pred HHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHH-HhCCCCCCHHHHHHHHHHH
Q 040365 249 VLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFI-SNMHAGPTENVWLTLLSAC 321 (514)
Q Consensus 249 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~~p~~~~~~~ll~~~ 321 (514)
|..+|.+.|+.+++..++..+.+. .+....-..+.+.-....-.+.|..++ +.+..+|+...+..|+..-
T Consensus 255 L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~ 325 (389)
T COG2956 255 LYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYH 325 (389)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhh
Confidence 555555556665555555555432 233333333333333333344444433 3344556666666666544
No 41
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=4e-10 Score=106.82 Aligned_cols=352 Identities=14% Similarity=0.061 Sum_probs=238.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCC-hhhHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHCC
Q 040365 12 VIVGLARNGLYEEALNIVRQMGNVNLKPD-SFTLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSSLINMYAKCA 90 (514)
Q Consensus 12 li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 90 (514)
.-.-|-++|.+++|++.|.+.+.. .|| +..|.....+|...|++++..+--...++.. +.-+-++..-.+++-..|
T Consensus 121 ~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~-P~Y~KAl~RRA~A~E~lg 197 (606)
T KOG0547|consen 121 KGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN-PDYVKALLRRASAHEQLG 197 (606)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC-cHHHHHHHHHHHHHHhhc
Confidence 344577899999999999999874 688 6677778888889999998887777776653 222334455556666667
Q ss_pred CHHHHHH----------------------HHcc---------CC---CC---ChhHHHHHHHHHH---------------
Q 040365 91 RVEDSHR----------------------LFCL---------LP---VK---DAISWNSIIAGCV--------------- 118 (514)
Q Consensus 91 ~~~~A~~----------------------~f~~---------~~---~~---d~~~~~~li~~~~--------------- 118 (514)
++++|+. ++.. +. +| +....++....|.
T Consensus 198 ~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksD 277 (606)
T KOG0547|consen 198 KFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSD 277 (606)
T ss_pred cHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccch
Confidence 6666542 1111 11 11 1111111111110
Q ss_pred ----------HCC---ChhHHHHHHHHHHHC-CCCCCHH---------HHHHHHH--HHhccCChHHHHHHHHHHHHcCC
Q 040365 119 ----------QNG---LFDEGLKFFRQMLIA-KIKPRHV---------SFSSIMP--ACAHLTTLHLGKQLHGCIIRNGF 173 (514)
Q Consensus 119 ----------~~g---~~~~A~~l~~~m~~~-g~~p~~~---------t~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~ 173 (514)
..+ .+.+|.+.+.+-... -..++.. .-..++. ...-.|+.-.+.+-++..++...
T Consensus 278 a~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~ 357 (606)
T KOG0547|consen 278 AALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDP 357 (606)
T ss_pred hhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCc
Confidence 001 112222222111000 0011111 0111111 12234677788888888888753
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 040365 174 DDNMFIASSLLDMYAKCGNIRLARCIFDKMD---LHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPN-SVAFVAV 249 (514)
Q Consensus 174 ~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~l 249 (514)
. +...|--+..+|....+-++-.+.|+... ..|..+|..-...+.-.+++++|..=|++.+. +.|+ ...|..+
T Consensus 358 ~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~--L~pe~~~~~iQl 434 (606)
T KOG0547|consen 358 A-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAIS--LDPENAYAYIQL 434 (606)
T ss_pred c-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhh--cChhhhHHHHHH
Confidence 3 33346667778999999999999998875 44666777777777778899999999999887 4554 4678888
Q ss_pred HHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC---------HHHHHHHHH
Q 040365 250 LTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISNMH-AGPT---------ENVWLTLLS 319 (514)
Q Consensus 250 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~---------~~~~~~ll~ 319 (514)
-.+..+.+.++++...|+...++ ++-.++.|+.....+...++++.|.+.|+... .+|+ +.+-.+++-
T Consensus 435 ~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~ 512 (606)
T KOG0547|consen 435 CCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLV 512 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhh
Confidence 88888999999999999999764 44568899999999999999999999998753 3333 222222332
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHH
Q 040365 320 ACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMR 372 (514)
Q Consensus 320 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 372 (514)
. .-.+++..|..+++++++++|....+|..|...-.+.|+.++|.++|++-.
T Consensus 513 ~-qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 513 L-QWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred h-chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 2 244899999999999999999999999999999999999999999999654
No 42
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.43 E-value=1.8e-11 Score=120.19 Aligned_cols=244 Identities=18% Similarity=0.125 Sum_probs=196.5
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcC--CCCcHHHHHHHHHHHHhcCCHHH-HHH
Q 040365 122 LFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLGKQLHGCIIRNG--FDDNMFIASSLLDMYAKCGNIRL-ARC 198 (514)
Q Consensus 122 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~y~k~g~~~~-A~~ 198 (514)
+..+|+.+|.+.... +.-+......+..+|..++++++++.+|+.+.+.. ...+..+|.+.+--+-+.=.+.. |..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 568899999985543 44455677788899999999999999999998763 23466778777755443222222 222
Q ss_pred HHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC
Q 040365 199 IFDKMDLHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKP-NSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAP 277 (514)
Q Consensus 199 ~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 277 (514)
+.+ +.+-...+|-++..+|.-+++.+.|++.|++..+ +.| ...+|+.+..-+.....+|.|...|+... ..
T Consensus 413 Li~-~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al-----~~ 484 (638)
T KOG1126|consen 413 LID-TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL-----GV 484 (638)
T ss_pred HHh-hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh-----cC
Confidence 222 2244678999999999999999999999999988 567 56888888888888999999999999764 45
Q ss_pred CHhHHHH---HHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 040365 278 SFEHYAA---VADLLGRAGKLQEAYEFISNMH-AGP-TENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILS 352 (514)
Q Consensus 278 ~~~~~~~---li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 352 (514)
++.+|++ |...|.+.++++.|+-.|+++. ..| +.++...+...+.+.|+.++|+++++++..++|.|+-.-...+
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 6666665 4666999999999999999874 455 5677788888899999999999999999999999999999999
Q ss_pred HHHHHccChhHHHHHHHHHHhC
Q 040365 353 NTYAAARRWKDAASLRVFMRNK 374 (514)
Q Consensus 353 ~~~~~~g~~~~a~~~~~~m~~~ 374 (514)
..+...+++++|++.++++++-
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHh
Confidence 9999999999999999999864
No 43
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.42 E-value=7.2e-12 Score=126.02 Aligned_cols=265 Identities=14% Similarity=0.152 Sum_probs=196.5
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 040365 128 KFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMDLHD 207 (514)
Q Consensus 128 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~d 207 (514)
.++-.+...|+.|+.+||.+++.-|+..|+.+.|- +|..|.-...+.+..+++.++......++.+.+. +|-
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45677888999999999999999999999999999 9999998888999999999999999999987776 778
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHH
Q 040365 208 IVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVAD 287 (514)
Q Consensus 208 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 287 (514)
..+|+.+..+|.++|+... |+...+ -...+...++..|--..-..++..+.-..+.-|+.. ..+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHH
Confidence 8899999999999999765 333222 223345556666666666666665433334445543 3555
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHH
Q 040365 288 LLGRAGKLQEAYEFISNMHAGPTENVWLTLLSACRVHKN-VELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAAS 366 (514)
Q Consensus 288 ~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 366 (514)
.+.-.|.++.+.+++..+|...........+.-+..... +++-....+.+.+ ..++.+|..+...-..+|+.+.|..
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e--~~~s~~l~a~l~~alaag~~d~Ak~ 225 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE--APTSETLHAVLKRALAAGDVDGAKN 225 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc--CCChHHHHHHHHHHHhcCchhhHHH
Confidence 667778899999999888743111111113555544433 3333333333333 3467899999999999999999999
Q ss_pred HHHHHHhCCCccCCcccEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcccCCccccc
Q 040365 367 LRVFMRNKGMKKTPACSWIEVKNKAYAFVAGDKSHPFYHRINEALKELLERMEQEGYVPDTKEVLH 432 (514)
Q Consensus 367 ~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~ 432 (514)
++..|+++|+.-.+...|..+.| .+....++.+++.|++.|+.|+..+...
T Consensus 226 ll~emke~gfpir~HyFwpLl~g---------------~~~~q~~e~vlrgmqe~gv~p~seT~ad 276 (1088)
T KOG4318|consen 226 LLYEMKEKGFPIRAHYFWPLLLG---------------INAAQVFEFVLRGMQEKGVQPGSETQAD 276 (1088)
T ss_pred HHHHHHHcCCCcccccchhhhhc---------------CccchHHHHHHHHHHHhcCCCCcchhHH
Confidence 99999999999999999976643 1223455688999999999999866543
No 44
>PF13041 PPR_2: PPR repeat family
Probab=99.42 E-value=4.1e-13 Score=90.15 Aligned_cols=50 Identities=34% Similarity=0.664 Sum_probs=48.5
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHhC
Q 040365 4 SDLVSWNTVIVGLARNGLYEEALNIVRQMGNVNLKPDSFTLSSVLPIFAD 53 (514)
Q Consensus 4 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 53 (514)
||+++||++|++|++.|++++|+++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999975
No 45
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.41 E-value=3.2e-09 Score=100.36 Aligned_cols=174 Identities=14% Similarity=0.178 Sum_probs=132.2
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHH---HccCCHHHHHHHHHHhHHhcCCC
Q 040365 207 DIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSV-------AFVAVLTAC---SHAGLIDKAWSYFNSMTKDYGIA 276 (514)
Q Consensus 207 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-------t~~~ll~a~---~~~g~~~~a~~~~~~m~~~~~~~ 276 (514)
|-.+|--.+..-...|+.+...++|++.... ++|-.. .|.-+=-+| ....+++.+.++|+...+ +-
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~---lI 396 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD---LI 396 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh---hc
Confidence 4456777777777789999999999998875 566321 122221222 346788999999988764 45
Q ss_pred C-CHhHHHHHHHHH----HhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHH
Q 040365 277 P-SFEHYAAVADLL----GRAGKLQEAYEFISNMH-AGPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVI 350 (514)
Q Consensus 277 p-~~~~~~~li~~~----~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 350 (514)
| ...++.-+--+| .|+.++..|.+++.... .-|-..++...|..-.+.++++....++++.++.+|.|..+|.-
T Consensus 397 PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~k 476 (677)
T KOG1915|consen 397 PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSK 476 (677)
T ss_pred CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHH
Confidence 5 455555554444 47889999999998764 45888899999998899999999999999999999999999999
Q ss_pred HHHHHHHccChhHHHHHHHHHHhCCCccCCcccE
Q 040365 351 LSNTYAAARRWKDAASLRVFMRNKGMKKTPACSW 384 (514)
Q Consensus 351 l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~ 384 (514)
.+..-...|+++.|..+|+...+....-.|..-|
T Consensus 477 yaElE~~LgdtdRaRaifelAi~qp~ldmpellw 510 (677)
T KOG1915|consen 477 YAELETSLGDTDRARAIFELAISQPALDMPELLW 510 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHH
Confidence 9999999999999999999988776554555444
No 46
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.40 E-value=2.9e-09 Score=98.92 Aligned_cols=287 Identities=11% Similarity=0.043 Sum_probs=169.9
Q ss_pred cCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHCCCHHHHHHH
Q 040365 19 NGLYEEALNIVRQMGNVNLKPDSFTLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSSLINMYAKCARVEDSHRL 98 (514)
Q Consensus 19 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 98 (514)
.|++.+|..+..+-.+++-.| ...|.....+--+.|+.+.+-+.+.++.+..-.++..+.-+........|+.+.|+.-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 456666666666555544222 2234444445555566666666666655553344555555555555556666655554
Q ss_pred HccC---CCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC
Q 040365 99 FCLL---PVKDAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLGKQLHGCIIRNGFDD 175 (514)
Q Consensus 99 f~~~---~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 175 (514)
.++. ..++..........|.+.|++.+...++.+|.+.|+--|+..- ..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~----------------------------~l 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA----------------------------RL 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH----------------------------HH
Confidence 4432 2345555555666666666666666666666555543222100 00
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 040365 176 NMFIASSLLDMYAKCGNIRLARCIFDKMD---LHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTA 252 (514)
Q Consensus 176 ~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 252 (514)
...+++.+++-....+..+.-...++..+ +.++..-.+++.-+.+.|+.++|.++..+..+.+..|+.. .+-.
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~ 303 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIP 303 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHh
Confidence 12234444444444444444444555554 3345556666777777888888888888877776666622 2234
Q ss_pred HHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 040365 253 CSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISNM-HAGPTENVWLTLLSACRVHKNVELAG 331 (514)
Q Consensus 253 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~a~ 331 (514)
+.+.++.+.-++..+.-.+.++-.| ..+.+|...|.+.+.+.+|.+.|+.. +..|+..+|+-+..++.+.|+.+.|.
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~ 381 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAE 381 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHH
Confidence 5566777766666666666555544 56677777888888888888888764 45678888888888888888888888
Q ss_pred HHHHHHHhc
Q 040365 332 KVAEKIFMI 340 (514)
Q Consensus 332 ~~~~~~~~~ 340 (514)
+..++.+.+
T Consensus 382 ~~r~e~L~~ 390 (400)
T COG3071 382 QVRREALLL 390 (400)
T ss_pred HHHHHHHHH
Confidence 877776643
No 47
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.40 E-value=8.2e-10 Score=112.87 Aligned_cols=360 Identities=14% Similarity=0.132 Sum_probs=229.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhh--HHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 040365 8 SWNTVIVGLARNGLYEEALNIVRQMGNVNLKPDSFT--LSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSSLINM 85 (514)
Q Consensus 8 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 85 (514)
+|--+.++|-..|++++|...|.+.... .||.++ +..+.+.+...|+++.+...|+.+.+.- +.+..+.-.|...
T Consensus 309 s~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~L 385 (1018)
T KOG2002|consen 309 SFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCL 385 (1018)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhH
Confidence 3555677888889999999988777664 355443 4456777888888999988888888774 5566677777777
Q ss_pred HHHCC----CHHHHHHHHccCCCC---ChhHHHHHHHHHHHCCChhHHHHHHHHHH----HCCCCCCHHHHHHHHHHHhc
Q 040365 86 YAKCA----RVEDSHRLFCLLPVK---DAISWNSIIAGCVQNGLFDEGLKFFRQML----IAKIKPRHVSFSSIMPACAH 154 (514)
Q Consensus 86 ~~~~g----~~~~A~~~f~~~~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~----~~g~~p~~~t~~~ll~~~~~ 154 (514)
|+..+ ..+.|..+.....++ |..+|-.+...+-+. ++..++.+|.... ..+-.+.....+.+......
T Consensus 386 ya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~ 464 (1018)
T KOG2002|consen 386 YAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFR 464 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHH
Confidence 77664 345555555544332 333443333333322 2222233333321 22223334444444444444
Q ss_pred cCChH--------------------------------------------HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc
Q 040365 155 LTTLH--------------------------------------------LGKQLHGCIIRNGFDDNMFIASSLLDMYAKC 190 (514)
Q Consensus 155 ~~~~~--------------------------------------------~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~ 190 (514)
.|+++ .|.+++..+++.. +.-+..|--|..+.-..
T Consensus 465 ~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k 543 (1018)
T KOG2002|consen 465 LGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDK 543 (1018)
T ss_pred hcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhc
Confidence 44444 4444444444431 11111122222222222
Q ss_pred CCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHc-----------
Q 040365 191 GNIRLARCIFDKMD---LHDIVSWTAVIMGNALHGNAHDAISLFEQMEKD-GVKPNSVAFVAVLTACSH----------- 255 (514)
Q Consensus 191 g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~----------- 255 (514)
+.+.+|...+.... ..++..|+.+...|.....+..|.+-|...... ...+|..+..+|.+.|..
T Consensus 544 ~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek 623 (1018)
T KOG2002|consen 544 NNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEK 623 (1018)
T ss_pred cCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHH
Confidence 44556666665554 345566776776777777777777766666542 233677777777776643
Q ss_pred -cCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHH
Q 040365 256 -AGLIDKAWSYFNSMTKDYGIAP-SFEHYAAVADLLGRAGKLQEAYEFISNMHAG--PTENVWLTLLSACRVHKNVELAG 331 (514)
Q Consensus 256 -~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--p~~~~~~~ll~~~~~~~~~~~a~ 331 (514)
.+..+.|+++|....+ ..| |...-+.+.-.++..|++.+|.++|...... .+..+|-.|..+|...|++-.|+
T Consensus 624 ~kk~~~KAlq~y~kvL~---~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AI 700 (1018)
T KOG2002|consen 624 EKKHQEKALQLYGKVLR---NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAI 700 (1018)
T ss_pred HHHHHHHHHHHHHHHHh---cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHH
Confidence 2346778888887764 345 7777788888899999999999999887522 34567999999999999999999
Q ss_pred HHHHHHHhcC--CCCcchHHHHHHHHHHccChhHHHHHHHHHHhCC
Q 040365 332 KVAEKIFMID--PNNMGAYVILSNTYAAARRWKDAASLRVFMRNKG 375 (514)
Q Consensus 332 ~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 375 (514)
+.|+..+... .+++.....|..++.+.|+|.+|.+.........
T Consensus 701 qmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 701 QMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 9999988753 4567788899999999999999999887776544
No 48
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.39 E-value=8.8e-09 Score=101.07 Aligned_cols=361 Identities=12% Similarity=0.089 Sum_probs=245.9
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHH----HhCCCCchhHHHHHHHHHHHCCC
Q 040365 16 LARNGLYEEALNIVRQMGNVNLKPDSFTLSSVLPIFADYVDVIKGKEIHGYAI----RHGLDANVCIGSSLINMYAKCAR 91 (514)
Q Consensus 16 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~----~~g~~~~~~~~~~li~~~~~~g~ 91 (514)
|++..-++.|..+++..++. ++-+...|.+....=-..|+.+....+....+ ..|+..+..-|-.=...+-+.|.
T Consensus 416 larLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ags 494 (913)
T KOG0495|consen 416 LARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGS 494 (913)
T ss_pred HHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCC
Confidence 33333444444444444332 33334444333333333444444433333221 22334444444333344444444
Q ss_pred HHHHHHHHccCC-----C-CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 040365 92 VEDSHRLFCLLP-----V-KDAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLGKQLH 165 (514)
Q Consensus 92 ~~~A~~~f~~~~-----~-~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 165 (514)
+-.+..+..... + .--.+|+.-...|.+.+.++-|..+|....+. .+-+...|..+...--..|..+....++
T Consensus 495 v~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~All 573 (913)
T KOG0495|consen 495 VITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALL 573 (913)
T ss_pred hhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHH
Confidence 444433333321 1 11235666667777778888888888887764 3445556666655556678888888888
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 040365 166 GCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMD---LHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPN 242 (514)
Q Consensus 166 ~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 242 (514)
++++..- +.....|-....-+.+.|++..|+.++...- ..+...|-+-+..-..+.++++|..+|.+... ..|+
T Consensus 574 qkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~sgT 650 (913)
T KOG0495|consen 574 QKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGT 650 (913)
T ss_pred HHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCc
Confidence 8888763 4455566666777788899999999988774 33567898888999999999999999999887 4567
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 040365 243 SVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISNM-HAGP-TENVWLTLLSA 320 (514)
Q Consensus 243 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~ 320 (514)
...|.--+..---.+++++|++++++..+.| +.-...|-.+.+.+-+.++++.|.+.|..- ..-| ....|-.|...
T Consensus 651 eRv~mKs~~~er~ld~~eeA~rllEe~lk~f--p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakl 728 (913)
T KOG0495|consen 651 ERVWMKSANLERYLDNVEEALRLLEEALKSF--PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKL 728 (913)
T ss_pred chhhHHHhHHHHHhhhHHHHHHHHHHHHHhC--CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHH
Confidence 7777666666667899999999999887653 223567888889999999999999887654 3335 46788888888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHhCCCccCCcccEE
Q 040365 321 CRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRNKGMKKTPACSWI 385 (514)
Q Consensus 321 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~ 385 (514)
--+.|++-.|..++++..-.+|.++..|...+.+-.+.|+.+.|..+..+..+.- |..|.-|.
T Consensus 729 eEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQec--p~sg~LWa 791 (913)
T KOG0495|consen 729 EEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQEC--PSSGLLWA 791 (913)
T ss_pred HHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccchhHH
Confidence 8999999999999999999999999999999999999999999999887776542 44455564
No 49
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.39 E-value=1.8e-10 Score=105.51 Aligned_cols=199 Identities=14% Similarity=0.058 Sum_probs=162.3
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 040365 175 DNMFIASSLLDMYAKCGNIRLARCIFDKMD---LHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLT 251 (514)
Q Consensus 175 ~~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 251 (514)
.....+..+...|.+.|++++|.+.|++.. +.+...+..+...|...|++++|.+.+++..+.. +.+...+..+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 345667778888999999999999998764 3356778888888999999999999999988753 334566777888
Q ss_pred HHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhcCCHHH
Q 040365 252 ACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISNMH-AG-PTENVWLTLLSACRVHKNVEL 329 (514)
Q Consensus 252 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~-p~~~~~~~ll~~~~~~~~~~~ 329 (514)
.+...|++++|...++..............+..+...+...|++++|.+.+++.. .. .+...|..+...+...|++++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 8899999999999999886532222245667778888999999999999998763 22 346778889999999999999
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHhC
Q 040365 330 AGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRNK 374 (514)
Q Consensus 330 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 374 (514)
|...+++..+..|+++..+..++..+...|++++|..+.+.+...
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 999999999988888888889999999999999999998877643
No 50
>PF13041 PPR_2: PPR repeat family
Probab=99.36 E-value=2.2e-12 Score=86.57 Aligned_cols=50 Identities=28% Similarity=0.628 Sum_probs=47.8
Q ss_pred CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 040365 105 KDAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAH 154 (514)
Q Consensus 105 ~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 154 (514)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||++++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
No 51
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.35 E-value=4e-10 Score=111.74 Aligned_cols=232 Identities=18% Similarity=0.131 Sum_probs=179.6
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHc-----C-CCCcHH-HHHHHHHHHHhcCCHHHHHHHHHhCC---------
Q 040365 141 RHVSFSSIMPACAHLTTLHLGKQLHGCIIRN-----G-FDDNMF-IASSLLDMYAKCGNIRLARCIFDKMD--------- 204 (514)
Q Consensus 141 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~li~~y~k~g~~~~A~~~~~~m~--------- 204 (514)
-..|...+...|...|+++.|.+++...++. | ..|.+. ..+.+...|...+++++|..+|+++.
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3456667888999999999999999988765 2 123332 33457789999999999999998874
Q ss_pred -CC-ChhHHHHHHHHHHhCCChHHHHHHHHHHHH-----cCCC-CCH-HHHHHHHHHHHccCCHHHHHHHHHHhHHhcC-
Q 040365 205 -LH-DIVSWTAVIMGNALHGNAHDAISLFEQMEK-----DGVK-PNS-VAFVAVLTACSHAGLIDKAWSYFNSMTKDYG- 274 (514)
Q Consensus 205 -~~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~-p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~- 274 (514)
.| -..+++.|..+|.+.|++++|..++++..+ .|.. |.. .-++.+...|...+.+++|..+++...+.+.
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 11 235788888899999999999988887654 1222 233 2366777889999999999999988766544
Q ss_pred -CCC----CHhHHHHHHHHHHhcCCHHHHHHHHHhCC-------CC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040365 275 -IAP----SFEHYAAVADLLGRAGKLQEAYEFISNMH-------AG--P-TENVWLTLLSACRVHKNVELAGKVAEKIFM 339 (514)
Q Consensus 275 -~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~-------~~--p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 339 (514)
..+ -..+++.|...|...|++++|+++++++. .+ + ....++.|..+|.+.+++++|.++|.+...
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 222 24789999999999999999999998863 11 2 235678889999999999999999988765
Q ss_pred c----C---CCCcchHHHHHHHHHHccChhHHHHHHHHHH
Q 040365 340 I----D---PNNMGAYVILSNTYAAARRWKDAASLRVFMR 372 (514)
Q Consensus 340 ~----~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 372 (514)
. + |+...+|..|+.+|...|++++|.++.+...
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3 3 4455788899999999999999999998875
No 52
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.33 E-value=9.3e-09 Score=104.63 Aligned_cols=355 Identities=12% Similarity=0.066 Sum_probs=258.6
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHCCCHHHH
Q 040365 16 LARNGLYEEALNIVRQMGNVNLKPDSFTLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSSLINMYAKCARVEDS 95 (514)
Q Consensus 16 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 95 (514)
+++ |+.++|..++.+.++.. +.+...|.++...+-+.|+.+++...+-.+--.. +.|...|-.+.+...+.|.++.|
T Consensus 150 far-g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 150 FAR-GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHh-CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHH
Confidence 444 99999999999999875 5566789999999999999999987765554433 66788999999999999999999
Q ss_pred HHHHccCCCCChh---HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHH----HHHHHHHhccCChHHHHHHHHHH
Q 040365 96 HRLFCLLPVKDAI---SWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSF----SSIMPACAHLTTLHLGKQLHGCI 168 (514)
Q Consensus 96 ~~~f~~~~~~d~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~----~~ll~~~~~~~~~~~a~~~~~~~ 168 (514)
.-.|.+..+.++. .+---+..|-+.|+...|++-|.++.+...+.|..-+ -.++..+...++-+.|.+.+...
T Consensus 227 ~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 227 RYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999987644333 3333457788999999999999999886432222222 23455566667778888888777
Q ss_pred HHc-CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCC----CCh----------------------hHHH----HHHHH
Q 040365 169 IRN-GFDDNMFIASSLLDMYAKCGNIRLARCIFDKMDL----HDI----------------------VSWT----AVIMG 217 (514)
Q Consensus 169 ~~~-~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~----~d~----------------------~~~~----~li~~ 217 (514)
... +-..+...++.++.+|.+...++.|......+.. +|. .+|+ -+.-+
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ic 386 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMIC 386 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhh
Confidence 663 2344566778899999999999998777665532 111 1121 12233
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCH
Q 040365 218 NALHGNAHDAISLFEQMEKDGVKP--NSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKL 295 (514)
Q Consensus 218 ~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 295 (514)
+......+....+..-..+..+.| +..-|.-+..++...|.+.+|+.+|..+... ...-+...|-.+..+|-..|..
T Consensus 387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~-~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNR-EGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC-ccccchhhhHHHHHHHHHHhhH
Confidence 444444444445555555555444 3456888999999999999999999999654 2222577899999999999999
Q ss_pred HHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---------CCcchHHHHHHHHHHccChhHH
Q 040365 296 QEAYEFISNMH-AGP-TENVWLTLLSACRVHKNVELAGKVAEKIFMIDP---------NNMGAYVILSNTYAAARRWKDA 364 (514)
Q Consensus 296 ~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p---------~~~~~~~~l~~~~~~~g~~~~a 364 (514)
++|.+.++... ..| +...--+|-..+.+.|+.++|.+.++.+..-++ ++..........|.+.|+.++-
T Consensus 466 e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~f 545 (895)
T KOG2076|consen 466 EEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEF 545 (895)
T ss_pred HHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHH
Confidence 99999999863 334 445566788889999999999999998764332 2233445677888999999887
Q ss_pred HHHHHHHHhC
Q 040365 365 ASLRVFMRNK 374 (514)
Q Consensus 365 ~~~~~~m~~~ 374 (514)
..+-..|...
T Consensus 546 i~t~~~Lv~~ 555 (895)
T KOG2076|consen 546 INTASTLVDD 555 (895)
T ss_pred HHHHHHHHHH
Confidence 7777776554
No 53
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=4e-09 Score=102.00 Aligned_cols=260 Identities=14% Similarity=0.036 Sum_probs=207.8
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 040365 107 AISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDM 186 (514)
Q Consensus 107 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 186 (514)
+...-....-+...+++.+.++++....+. .++....+..-|..+...|+..+-..+-..+++. .|....+|-++.--
T Consensus 244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 244 LDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCY 321 (611)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHH
Confidence 333444456677889999999999998875 3556566666666788888887777777777776 46677889899888
Q ss_pred HHhcCCHHHHHHHHHhCCCCC---hhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 040365 187 YAKCGNIRLARCIFDKMDLHD---IVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAW 263 (514)
Q Consensus 187 y~k~g~~~~A~~~~~~m~~~d---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 263 (514)
|.-.|...+|++.|.+...-| ...|-.+...|+-.|..+.|+..+...-+. ++-...-+.-+..-|.+.++.+.|.
T Consensus 322 Yl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHH
Confidence 989999999999999876333 468999999999999999999999887663 2222233444555688899999999
Q ss_pred HHHHHhHHhcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhCC--------CCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 040365 264 SYFNSMTKDYGIAP-SFEHYAAVADLLGRAGKLQEAYEFISNMH--------AGP-TENVWLTLLSACRVHKNVELAGKV 333 (514)
Q Consensus 264 ~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--------~~p-~~~~~~~ll~~~~~~~~~~~a~~~ 333 (514)
++|.+.. ++.| |+...+-+.-..-..+.+.+|..+|+... .++ -..+|+.|..+|++.+.+++|+..
T Consensus 401 ~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 401 KFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 9999774 7777 66777777666677889999999988653 112 345788999999999999999999
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHH
Q 040365 334 AEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMR 372 (514)
Q Consensus 334 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 372 (514)
+++.+.+.|.++.+|.+++-.|...|+.+.|...|.+..
T Consensus 478 ~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 478 YQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 999999999999999999999999999999999998764
No 54
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=5.6e-09 Score=98.58 Aligned_cols=284 Identities=12% Similarity=0.083 Sum_probs=168.0
Q ss_pred HHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHCCCHHHHHHHHccCCCC------ChhHHHHHHHHHHHCC
Q 040365 48 LPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSSLINMYAKCARVEDSHRLFCLLPVK------DAISWNSIIAGCVQNG 121 (514)
Q Consensus 48 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~------d~~~~~~li~~~~~~g 121 (514)
..++-.....+++.+-.......|++.+...-+....+.-...++|.|+.+|+++... |..+|+-++ |+++.
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~ 311 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhh
Confidence 3445555566677777777777777666666665566666667777777777777643 445555444 23332
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 040365 122 LFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFD 201 (514)
Q Consensus 122 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~ 201 (514)
+.. +.++.+-...--+--+.|...+.+-|+-.++.++|...|+..++.+ +....+|+.+..-|....+...|.+.++
T Consensus 312 ~sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 312 KSK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred hHH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 221 1222111111012223455666666666777777777777777765 4455666767777777777777777776
Q ss_pred hCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC
Q 040365 202 KMD---LHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKP-NSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAP 277 (514)
Q Consensus 202 ~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 277 (514)
... ++|-..|-.+.++|...+.+.=|+-.|++... .+| |...|.+|..+|.+.++.++|+..|.....- -..
T Consensus 389 rAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~--~dt 464 (559)
T KOG1155|consen 389 RAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL--GDT 464 (559)
T ss_pred HHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc--ccc
Confidence 543 45666777777777777777777777777666 344 3456777777777777777777777766432 122
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHhCC--------CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 040365 278 SFEHYAAVADLLGRAGKLQEAYEFISNMH--------AGPTE-NVWLTLLSACRVHKNVELAGKVAEKIFMI 340 (514)
Q Consensus 278 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~--------~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 340 (514)
+...+..|.++|-+.++.++|...|++-. ..|.. .+---|..-+.+.+++++|.........-
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 44666677777777777777766665431 11211 11111444456666666666655554443
No 55
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.30 E-value=6.2e-09 Score=96.78 Aligned_cols=276 Identities=11% Similarity=0.052 Sum_probs=206.5
Q ss_pred CCCHHHHHHHHccCC---CCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 040365 89 CARVEDSHRLFCLLP---VKDAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLGKQLH 165 (514)
Q Consensus 89 ~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 165 (514)
.|++..|+++..+-. +..+..|..-..+--+.|+.+.+-.++.+..+..-.++...+.+........|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 589999999887654 33455566666777888999999999988877533455555666677788889999999888
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-----------hhHHHHHHHHHHhCCChHHHHHHHHHH
Q 040365 166 GCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMDLHD-----------IVSWTAVIMGNALHGNAHDAISLFEQM 234 (514)
Q Consensus 166 ~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~d-----------~~~~~~li~~~~~~g~~~~A~~l~~~m 234 (514)
+.+.+.+ +.+..+.......|.+.|++.....++..+.+.. ..+|+.++.-....+..+.-...|++.
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 8888876 6677888888999999999999999999887442 246777777766666666655666665
Q ss_pred HHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHH----HhCCCCCC
Q 040365 235 EKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFI----SNMHAGPT 310 (514)
Q Consensus 235 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~p~ 310 (514)
..+ .+-+...-.+++.-+...|+.++|.++.....+. +..|+.. .++ ...+-++.+.-.+.. ...+..
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L~---~~~-~~l~~~d~~~l~k~~e~~l~~h~~~-- 327 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRLC---RLI-PRLRPGDPEPLIKAAEKWLKQHPED-- 327 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhHH---HHH-hhcCCCCchHHHHHHHHHHHhCCCC--
Confidence 443 4445555667777888999999999998888765 5555521 112 223444444433333 334443
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHhC
Q 040365 311 ENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRNK 374 (514)
Q Consensus 311 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 374 (514)
+..+.+|...|.+++.+.+|...|+..+...|. ...|..++.+|.+.|+.++|.+++++-.-.
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 478899999999999999999999999888875 679999999999999999999999877643
No 56
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.30 E-value=7.5e-09 Score=93.48 Aligned_cols=285 Identities=13% Similarity=0.131 Sum_probs=171.6
Q ss_pred CCHHHHHHHHccCCCCChhHH---HHHHHHHHHCCChhHHHHHHHHHHHCCCCCCH------HHHHHHHHHHhccCChHH
Q 040365 90 ARVEDSHRLFCLLPVKDAISW---NSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRH------VSFSSIMPACAHLTTLHL 160 (514)
Q Consensus 90 g~~~~A~~~f~~~~~~d~~~~---~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~------~t~~~ll~~~~~~~~~~~ 160 (514)
.+.++|.++|-+|.+-|..|+ -+|.+.|.+.|..+.|+++-..+.++ ||. ...-.+..-|...|-++.
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 344444444444443333322 23444444445555555444444332 111 111123333444555555
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCChh--------HHHHHHHHHHhCCChHHHHHHHH
Q 040365 161 GKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMDLHDIV--------SWTAVIMGNALHGNAHDAISLFE 232 (514)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~d~~--------~~~~li~~~~~~g~~~~A~~l~~ 232 (514)
|+.+|..+.+.+ ..-......|+..|-+..+|++|+++-+++.+-+.. -|--+...+....+.+.|..++.
T Consensus 126 AE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 126 AEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 555555554433 112223344555666666666666655544322221 23334455556778899999999
Q ss_pred HHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC
Q 040365 233 QMEKDGVKPNSV-AFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISNMH-AGPT 310 (514)
Q Consensus 233 ~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~ 310 (514)
+..+. .|+.+ .-..+.......|+++.|.+.++.+.+. +..--..+...|..+|...|+.++...++.++. ..+.
T Consensus 205 kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 205 KALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred HHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 98885 34332 3344566788899999999999999765 333346788899999999999999999998763 4455
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH-H--HccChhHHHHHHHHHHhCCCccCCcc
Q 040365 311 ENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTY-A--AARRWKDAASLRVFMRNKGMKKTPAC 382 (514)
Q Consensus 311 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~--~~g~~~~a~~~~~~m~~~g~~~~~~~ 382 (514)
...-..+-..-....-.+.|...+.+-+...|.-- .+..|+... . .-|++.+...++..|....++..|.+
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~-gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~Y 355 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMR-GFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRY 355 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHH-HHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCc
Confidence 55556666655666667788888877777778644 444455443 2 44679999999999988877766643
No 57
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.28 E-value=8.7e-10 Score=111.40 Aligned_cols=256 Identities=13% Similarity=0.071 Sum_probs=166.4
Q ss_pred HHHHHHhhCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHCCCHHHHHHHHccCCCCC
Q 040365 27 NIVRQMGNVNLKPDSFTLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSSLINMYAKCARVEDSHRLFCLLPVKD 106 (514)
Q Consensus 27 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~d 106 (514)
.++-.|...|+.||.+||.+++.-|+..|+.+.|- +|..|.-..++....+++.++......++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 46677888999999999999999999999999888 9999988888889999999999999999888776 778
Q ss_pred hhHHHHHHHHHHHCCChhH---HHHHHHHHH----HCCCCCCHHHHHHHHHHHhccC-C------hHHHHHHHHHHHHcC
Q 040365 107 AISWNSIIAGCVQNGLFDE---GLKFFRQML----IAKIKPRHVSFSSIMPACAHLT-T------LHLGKQLHGCIIRNG 172 (514)
Q Consensus 107 ~~~~~~li~~~~~~g~~~~---A~~l~~~m~----~~g~~p~~~t~~~ll~~~~~~~-~------~~~a~~~~~~~~~~~ 172 (514)
..+|+.|..+|.+.|+..- ..+.+.... ..|+..-..-+...+.+|-+.- + ..--+.+++..++.+
T Consensus 83 aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll 162 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLL 162 (1088)
T ss_pred hhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999998654 222122211 1232222222222222221110 0 111122233333332
Q ss_pred C-CCcHHHHHH-H--HHHHHh-cCCHHHHHHHHHhCC-CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHH
Q 040365 173 F-DDNMFIASS-L--LDMYAK-CGNIRLARCIFDKMD-LHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAF 246 (514)
Q Consensus 173 ~-~~~~~~~~~-l--i~~y~k-~g~~~~A~~~~~~m~-~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 246 (514)
. .|....++. . +.-... ...+++-...-.... .++..++.+.+..-.-.|+.+.|..++.+|.+.|+..+..-|
T Consensus 163 ~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyF 242 (1088)
T KOG4318|consen 163 AKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYF 242 (1088)
T ss_pred hhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccc
Confidence 1 111110000 0 111111 111222222222222 478888999998888899999999999999999988888777
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCC
Q 040365 247 VAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGK 294 (514)
Q Consensus 247 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 294 (514)
-.|+-+ .++..-+..+++.|.. .|+.|+.+|+.-.+-.+...|.
T Consensus 243 wpLl~g---~~~~q~~e~vlrgmqe-~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 243 WPLLLG---INAAQVFEFVLRGMQE-KGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred hhhhhc---CccchHHHHHHHHHHH-hcCCCCcchhHHHHHhhhcchh
Confidence 777755 7777788888888844 5999998888776666555444
No 58
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.28 E-value=4.4e-09 Score=98.74 Aligned_cols=180 Identities=16% Similarity=0.151 Sum_probs=124.4
Q ss_pred cCCHHHHHHHHHhCCCCChhHHHHHH---HHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 040365 190 CGNIRLARCIFDKMDLHDIVSWTAVI---MGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYF 266 (514)
Q Consensus 190 ~g~~~~A~~~~~~m~~~d~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 266 (514)
.|++++|.+.+.+....|...-.+|. -.+-..|+.++|++.|-++..- +.-+...+..+.+.|-...+..+|++++
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 35566666666666555544333332 2345567777777777666542 2335566666777777777888888877
Q ss_pred HHhHHhcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHh-CC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 040365 267 NSMTKDYGIAP-SFEHYAAVADLLGRAGKLQEAYEFISN-MH-AGPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPN 343 (514)
Q Consensus 267 ~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~-m~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 343 (514)
.+.. .+.| |+....-|.+.|-+.|+-..|.+..-+ .. ++-+..+..-|..-|....-.+.++..|+++.-+.|+
T Consensus 582 ~q~~---slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~ 658 (840)
T KOG2003|consen 582 MQAN---SLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPN 658 (840)
T ss_pred HHhc---ccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCcc
Confidence 6653 4455 788899999999999999999886543 33 3346666666667777777889999999998877775
Q ss_pred CcchHHHHH-HHHHHccChhHHHHHHHHHHhC
Q 040365 344 NMGAYVILS-NTYAAARRWKDAASLRVFMRNK 374 (514)
Q Consensus 344 ~~~~~~~l~-~~~~~~g~~~~a~~~~~~m~~~ 374 (514)
..-|..++ .++-+.|++..|..+++....+
T Consensus 659 -~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 659 -QSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred -HHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 45666554 5567889999999999988654
No 59
>PRK12370 invasion protein regulator; Provisional
Probab=99.23 E-value=1.1e-08 Score=106.16 Aligned_cols=258 Identities=13% Similarity=0.022 Sum_probs=185.2
Q ss_pred CChhHHHHHHHHHHH-----CCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHh---------ccCChHHHHHHHHHHH
Q 040365 105 KDAISWNSIIAGCVQ-----NGLFDEGLKFFRQMLIAKIKPRH-VSFSSIMPACA---------HLTTLHLGKQLHGCII 169 (514)
Q Consensus 105 ~d~~~~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~---------~~~~~~~a~~~~~~~~ 169 (514)
.+..+|...+.+-.. .+..++|+.+|++..+. .|+. ..|..+..++. ..+++++|...+++++
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 355566666666422 13467899999998875 4554 34444443332 2345789999999998
Q ss_pred HcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCC--CC-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH-H
Q 040365 170 RNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMD--LH-DIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSV-A 245 (514)
Q Consensus 170 ~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~--~~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t 245 (514)
+.. +.+...+..+...+...|++++|...|++.. .| +...|..+...+...|++++|+..+++..+. .|+.. .
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~ 408 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAA 408 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhh
Confidence 876 5677888888899999999999999999875 33 5667888899999999999999999999885 45432 3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCH-HHHHHHHHHHH
Q 040365 246 FVAVLTACSHAGLIDKAWSYFNSMTKDYGIAP-SFEHYAAVADLLGRAGKLQEAYEFISNMH-AGPTE-NVWLTLLSACR 322 (514)
Q Consensus 246 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~-~~~~~ll~~~~ 322 (514)
+..++..+...|++++|...++++.+. ..| ++..+..+...|...|++++|.+.++++. ..|+. ..++.|...+.
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYC 486 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHh
Confidence 333444566689999999999988653 134 45567778888999999999999998864 33543 34555666667
Q ss_pred hcCCHHHHHHHHHHHHhcC---CCCcchHHHHHHHHHHccChhHHHHHHHHHHhCC
Q 040365 323 VHKNVELAGKVAEKIFMID---PNNMGAYVILSNTYAAARRWKDAASLRVFMRNKG 375 (514)
Q Consensus 323 ~~~~~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 375 (514)
..| +.+...++++.+.. |.++. .+...|+-.|+-+.+... +++.+.|
T Consensus 487 ~~g--~~a~~~l~~ll~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 487 QNS--ERALPTIREFLESEQRIDNNPG---LLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred ccH--HHHHHHHHHHHHHhhHhhcCch---HHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 777 47888777777643 43333 366677778888777777 7777654
No 60
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.22 E-value=4e-09 Score=96.53 Aligned_cols=194 Identities=14% Similarity=0.076 Sum_probs=140.8
Q ss_pred hhhHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHCCCHHHHHHHHccCC---CCChhHHHHHHHHH
Q 040365 41 SFTLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSSLINMYAKCARVEDSHRLFCLLP---VKDAISWNSIIAGC 117 (514)
Q Consensus 41 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~d~~~~~~li~~~ 117 (514)
...+..+...+...|++++|.+.+..+++.. +.+...+..+...|...|++++|.+.|++.. ..+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 4556667777777888888888888777664 4456677777788888888888888877654 23456677777788
Q ss_pred HHCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHH
Q 040365 118 VQNGLFDEGLKFFRQMLIAKIKP-RHVSFSSIMPACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLA 196 (514)
Q Consensus 118 ~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A 196 (514)
...|++++|.+.|++.......| ....+..+..++...|++++|.+.+....+.. +.+...+..+...|.+.|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence 88888888888888877643222 33455566677778888888888888887764 34556677788888888888888
Q ss_pred HHHHHhCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 040365 197 RCIFDKMD---LHDIVSWTAVIMGNALHGNAHDAISLFEQMEK 236 (514)
Q Consensus 197 ~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 236 (514)
...+++.. ..+...+..+...+...|+.++|..+.+.+..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 88887754 33556666777777788888888888777654
No 61
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.22 E-value=4.7e-07 Score=86.07 Aligned_cols=365 Identities=8% Similarity=0.054 Sum_probs=251.9
Q ss_pred CCCcchHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 040365 3 VSDLVSWNTVIVGLARNGLYEEALNIVRQMGNVNLKPDSFTLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSSL 82 (514)
Q Consensus 3 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 82 (514)
.+|+..|--.+..=.++..+..|..+++.....=.+.|.. |---+-.=-..|++..|+++|+.-.+ ..|+...|++.
T Consensus 104 ~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdql-WyKY~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sf 180 (677)
T KOG1915|consen 104 YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQL-WYKYIYMEEMLGNIAGARQIFERWME--WEPDEQAWLSF 180 (677)
T ss_pred cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHH-HHHHHHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHH
Confidence 4677778888888888888889999998887642222332 22233333456889999999987765 47999999999
Q ss_pred HHHHHHCCCHHHHHHHHccCC--CCChhHHHHHHHHHHHCCChhHHHHHHHHHHHC-CC-CCCHHHHHHHHHHHhccCCh
Q 040365 83 INMYAKCARVEDSHRLFCLLP--VKDAISWNSIIAGCVQNGLFDEGLKFFRQMLIA-KI-KPRHVSFSSIMPACAHLTTL 158 (514)
Q Consensus 83 i~~~~~~g~~~~A~~~f~~~~--~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~-~p~~~t~~~ll~~~~~~~~~ 158 (514)
|+.=.+...++.|+.++++.. .|++.+|--...--.++|+..-|.++|....+. |- ..+...|++...--.+...+
T Consensus 181 I~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ 260 (677)
T KOG1915|consen 181 IKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEY 260 (677)
T ss_pred HHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998854 688888877777777788888887777776542 10 01111222222111122222
Q ss_pred HHHHHHHH--------------------------------------------HHHHcCCCCcHHHHHHHHHHHHhcCCHH
Q 040365 159 HLGKQLHG--------------------------------------------CIIRNGFDDNMFIASSLLDMYAKCGNIR 194 (514)
Q Consensus 159 ~~a~~~~~--------------------------------------------~~~~~~~~~~~~~~~~li~~y~k~g~~~ 194 (514)
+.|.-++. .+++.+ +.|-.+|--.++.-...|+.+
T Consensus 261 ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~ 339 (677)
T KOG1915|consen 261 ERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKD 339 (677)
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHH
Confidence 33322222 222222 445666777777778889999
Q ss_pred HHHHHHHhCC--CCCh---hHHHHHHH--------HHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----ccC
Q 040365 195 LARCIFDKMD--LHDI---VSWTAVIM--------GNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACS----HAG 257 (514)
Q Consensus 195 ~A~~~~~~m~--~~d~---~~~~~li~--------~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~----~~g 257 (514)
..+++|++.. .|.. .-|...|- .=....+.+.+.++|+..++. ++-..+||.-+--.|+ ++.
T Consensus 340 ~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~ 418 (677)
T KOG1915|consen 340 RIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQL 418 (677)
T ss_pred HHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHc
Confidence 9999999875 2211 22332221 112467888999999988873 3444577765544443 567
Q ss_pred CHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 040365 258 LIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISNMH-AGP-TENVWLTLLSACRVHKNVELAGKVAE 335 (514)
Q Consensus 258 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~ 335 (514)
++..|.+++.... |.-|...++...|+.=.+.+.++....++++.. ..| |-.+|......-...|+.+.|..+|+
T Consensus 419 ~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaife 495 (677)
T KOG1915|consen 419 NLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFE 495 (677)
T ss_pred ccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 8899999998775 888999999999999999999999999998863 334 66788888888888999999999999
Q ss_pred HHHhcCCCC--cchHHHHHHHHHHccChhHHHHHHHHHHhCC
Q 040365 336 KIFMIDPNN--MGAYVILSNTYAAARRWKDAASLRVFMRNKG 375 (514)
Q Consensus 336 ~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 375 (514)
-+++....+ ...|-..+..-...|.++.|..+++.+.++.
T Consensus 496 lAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 496 LAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred HHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 887654211 1344555666678899999999999887764
No 62
>PRK12370 invasion protein regulator; Provisional
Probab=99.21 E-value=9.6e-09 Score=106.54 Aligned_cols=242 Identities=9% Similarity=-0.019 Sum_probs=149.7
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH---------HCCCHHHHHHHHccCCC---CChhHHHHHHHHHHHCCC
Q 040365 55 VDVIKGKEIHGYAIRHGLDANVCIGSSLINMYA---------KCARVEDSHRLFCLLPV---KDAISWNSIIAGCVQNGL 122 (514)
Q Consensus 55 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~---------~~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~ 122 (514)
+++++|.+.++++++.. +.+...+..+..+|. ..+++++|...+++..+ .+..+|..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 34567778888777664 334455555554443 22347778877776552 356677777777778888
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 040365 123 FDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDK 202 (514)
Q Consensus 123 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~ 202 (514)
+++|...|++..+.+ +.+...+..+..++...|++++|...++..++.. +.+...+..++..+...|++++|...+++
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 888888888877753 3344556667777778888888888888887764 22233333344456667888888888877
Q ss_pred CC---CC-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHccCCHHHHHHHHHHhHHhcCCCC
Q 040365 203 MD---LH-DIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFV-AVLTACSHAGLIDKAWSYFNSMTKDYGIAP 277 (514)
Q Consensus 203 m~---~~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 277 (514)
.. .| +...+..+...|...|+.++|...+.++... .|+..+.. .+...+...| +.+...++.+.+...-.|
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 63 23 3445666777777888888888888776553 45544433 3333445555 467776666655444444
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 040365 278 SFEHYAAVADLLGRAGKLQEAYEFISNMH 306 (514)
Q Consensus 278 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 306 (514)
....... ..|.-.|+-+.+..+ +++.
T Consensus 508 ~~~~~~~--~~~~~~g~~~~~~~~-~~~~ 533 (553)
T PRK12370 508 NNPGLLP--LVLVAHGEAIAEKMW-NKFK 533 (553)
T ss_pred cCchHHH--HHHHHHhhhHHHHHH-HHhh
Confidence 3223323 334445555555555 5554
No 63
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.19 E-value=1.7e-09 Score=97.63 Aligned_cols=225 Identities=13% Similarity=0.036 Sum_probs=147.0
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCC--C-ChhHHHHHHHHHHhCC
Q 040365 146 SSIMPACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMDL--H-DIVSWTAVIMGNALHG 222 (514)
Q Consensus 146 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~--~-d~~~~~~li~~~~~~g 222 (514)
+.+.++|.++|.+.+|+..++..++.. |-+.+|-.|-..|.+..+...|..+|.+-.+ | |+....-+...+-..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 445555566666666666665555543 2333444455556666666666666655431 2 3333333444455556
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 040365 223 NAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFI 302 (514)
Q Consensus 223 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 302 (514)
+.++|.++|+...+.. ..|.....++...|.-.++.+.|..+++++.. .|+ -+++.|+.+.-+|...+++|-++.-|
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLq-mG~-~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQ-MGA-QSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHH-hcC-CChHHHhhHHHHHHhhcchhhhHHHH
Confidence 6666666666665531 22344455555566666667777777666643 243 24556666666666666676666666
Q ss_pred HhCC---CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHhCC
Q 040365 303 SNMH---AGPT--ENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRNKG 375 (514)
Q Consensus 303 ~~m~---~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 375 (514)
++.. ..|+ ..+|..|.......||+..|.+.|+-.+..+|++..+++.|.-.-.+.|++++|..+++......
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 5542 1233 46788888888999999999999999999999999999999999999999999999999887643
No 64
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=8.6e-08 Score=89.43 Aligned_cols=302 Identities=10% Similarity=-0.012 Sum_probs=213.8
Q ss_pred CChhhHHHHHHHHhC--CCChHHHHHHHHHHHHh-CCCCchhHHHHHHHHHHHCCCHHHHHHHHccCCCCChhHHHHH--
Q 040365 39 PDSFTLSSVLPIFAD--YVDVIKGKEIHGYAIRH-GLDANVCIGSSLINMYAKCARVEDSHRLFCLLPVKDAISWNSI-- 113 (514)
Q Consensus 39 p~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~d~~~~~~l-- 113 (514)
|+..+...-+.++++ .++...+.+.+..+... -++.++....++.+.|...|+.++|...|+....-|+.+...|
T Consensus 192 ~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~ 271 (564)
T KOG1174|consen 192 DHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDL 271 (564)
T ss_pred CCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHH
Confidence 444444444554433 34445555555544433 3677888999999999999999999999998765544433332
Q ss_pred -HHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Q 040365 114 -IAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGN 192 (514)
Q Consensus 114 -i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~ 192 (514)
.-.+.+.|+.+....+...+.... +-+...|-.-+...-..++++.|..+-++.++.. +.++..+-.-...+...|+
T Consensus 272 Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R 349 (564)
T KOG1174|consen 272 YAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALER 349 (564)
T ss_pred HHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccc
Confidence 233467888888888877776532 2233333333333445677888888887777764 3444444444566778899
Q ss_pred HHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHH-ccCCHHHHHHHHH
Q 040365 193 IRLARCIFDKMD---LHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVL-TACS-HAGLIDKAWSYFN 267 (514)
Q Consensus 193 ~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~-~~g~~~~a~~~~~ 267 (514)
.++|.-.|+... .-+..+|.-++..|...|++.+|.-+-+..... +.-+..+...+. ..|. ....-++|..+++
T Consensus 350 ~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~e 428 (564)
T KOG1174|consen 350 HTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAE 428 (564)
T ss_pred hHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHH
Confidence 999999998764 358899999999999999999999877765543 233445554442 2222 2334578888888
Q ss_pred HhHHhcCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 040365 268 SMTKDYGIAPS-FEHYAAVADLLGRAGKLQEAYEFISNM-HAGPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNM 345 (514)
Q Consensus 268 ~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 345 (514)
.-. .+.|+ ....+.+...+.+.|..+++..++++. ...||...-+.|...+...+.+++|...|..++.++|++.
T Consensus 429 k~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 429 KSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred hhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence 654 56775 456677888899999999999999986 4569999999999999999999999999999999999875
Q ss_pred c
Q 040365 346 G 346 (514)
Q Consensus 346 ~ 346 (514)
.
T Consensus 506 ~ 506 (564)
T KOG1174|consen 506 R 506 (564)
T ss_pred H
Confidence 3
No 65
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=5.2e-08 Score=94.43 Aligned_cols=252 Identities=11% Similarity=0.021 Sum_probs=140.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHCCC
Q 040365 12 VIVGLARNGLYEEALNIVRQMGNVNLKPDSFTLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSSLINMYAKCAR 91 (514)
Q Consensus 12 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 91 (514)
-..-+-..+++++.++++....+.. ++....+..-|..+...|+..+-..+=..+++. .|....+|-++.--|.--|.
T Consensus 250 ~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k 327 (611)
T KOG1173|consen 250 KADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGK 327 (611)
T ss_pred HHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcC
Confidence 3344555667777777777766543 455555555555666666665555454455554 35556667777666666677
Q ss_pred HHHHHHHHccCCCCC---hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 040365 92 VEDSHRLFCLLPVKD---AISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLGKQLHGCI 168 (514)
Q Consensus 92 ~~~A~~~f~~~~~~d---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 168 (514)
.++|++.|.....-| ...|-.....|+-.|..+.|+..|...-+. ++-....+.-+.--|.+.++++.|.++|.+.
T Consensus 328 ~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A 406 (611)
T KOG1173|consen 328 YSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQA 406 (611)
T ss_pred cHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHH
Confidence 777777776654322 346777777777777777777776665442 1112222222333466677777777777776
Q ss_pred HHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCCC----------ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 040365 169 IRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMDLH----------DIVSWTAVIMGNALHGNAHDAISLFEQMEKDG 238 (514)
Q Consensus 169 ~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~----------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 238 (514)
.... |.|+.+.+-+.-++.+.+.+.+|...|+....+ -..+|+.+..+|.+.+.+++|+..|++....
T Consensus 407 ~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l- 484 (611)
T KOG1173|consen 407 LAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL- 484 (611)
T ss_pred HhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-
Confidence 6653 556666666666666667777777666654310 1122444444444444444444444444432
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 040365 239 VKPNSVAFVAVLTACSHAGLIDKAWSYFNS 268 (514)
Q Consensus 239 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 268 (514)
.+-|..|+.++.-.+...|+++.|.+.|..
T Consensus 485 ~~k~~~~~asig~iy~llgnld~Aid~fhK 514 (611)
T KOG1173|consen 485 SPKDASTHASIGYIYHLLGNLDKAIDHFHK 514 (611)
T ss_pred CCCchhHHHHHHHHHHHhcChHHHHHHHHH
Confidence 122334444444444444444444444443
No 66
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.07 E-value=5.2e-08 Score=92.68 Aligned_cols=213 Identities=15% Similarity=0.058 Sum_probs=136.7
Q ss_pred ChHHHHHHHHHHHHcC-CCCc--HHHHHHHHHHHHhcCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHHHHHH
Q 040365 157 TLHLGKQLHGCIIRNG-FDDN--MFIASSLLDMYAKCGNIRLARCIFDKMD---LHDIVSWTAVIMGNALHGNAHDAISL 230 (514)
Q Consensus 157 ~~~~a~~~~~~~~~~~-~~~~--~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l 230 (514)
..+.+..-+.+++... ..|+ ...+..+...|.+.|+.++|...|++.. ..+...|+.+...+...|++++|+..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4455556666666432 2222 3456677778888888888888887764 34567888888888888888888888
Q ss_pred HHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 040365 231 FEQMEKDGVKPN-SVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISNMHAGP 309 (514)
Q Consensus 231 ~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 309 (514)
|++..+. .|+ ..++..+..++...|++++|.+.|+...+. .|+..........+...++.++|.+.+++....-
T Consensus 121 ~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 121 FDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 8888773 554 456777777788888888888888877643 4532211222223445677888888886532111
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------hcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHhCCC
Q 040365 310 TENVWLTLLSACRVHKNVELAGKVAEKIF-------MIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRNKGM 376 (514)
Q Consensus 310 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 376 (514)
+...|.. .......|+...+ ..++.+. ++.|..+.+|..++..|.+.|++++|...|++..+.+.
T Consensus 196 ~~~~~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 196 DKEQWGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred CccccHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 1122321 1222334544433 2334433 33455667888888888889999999988888876553
No 67
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.06 E-value=4.8e-08 Score=97.17 Aligned_cols=231 Identities=13% Similarity=0.095 Sum_probs=173.9
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHC-----C-CCCCHHHH-HHHHHHHhccCChHHHHHHHHHHHHc-----C--CC
Q 040365 109 SWNSIIAGCVQNGLFDEGLKFFRQMLIA-----K-IKPRHVSF-SSIMPACAHLTTLHLGKQLHGCIIRN-----G--FD 174 (514)
Q Consensus 109 ~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g-~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~-----~--~~ 174 (514)
+..-+...|...|++++|..+++...+. | ..|...+. ..+...|...+++++|..+|+.++.. | .+
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3444888999999999999999887654 2 13444333 33666788899999999999988753 2 12
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHhCC----------CCCh-hHHHHHHHHHHhCCChHHHHHHHHHHHHc---CCC
Q 040365 175 DNMFIASSLLDMYAKCGNIRLARCIFDKMD----------LHDI-VSWTAVIMGNALHGNAHDAISLFEQMEKD---GVK 240 (514)
Q Consensus 175 ~~~~~~~~li~~y~k~g~~~~A~~~~~~m~----------~~d~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~ 240 (514)
.-..+++.|..+|.+.|++++|...+++.. .+++ ...+.+...+...+++++|..+++...+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 224566777888999999999888777653 2233 24667777888999999999999876541 133
Q ss_pred CCH----HHHHHHHHHHHccCCHHHHHHHHHHhHHhc-----CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhCC----
Q 040365 241 PNS----VAFVAVLTACSHAGLIDKAWSYFNSMTKDY-----GIAP-SFEHYAAVADLLGRAGKLQEAYEFISNMH---- 306 (514)
Q Consensus 241 p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~---- 306 (514)
++. .++..+...+.+.|++++|.++|++..... +..+ ....++.|...|.+.++.++|.++|.+..
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 333 578899999999999999999999886643 1123 24677888899999999999999988752
Q ss_pred ----CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040365 307 ----AGPTE-NVWLTLLSACRVHKNVELAGKVAEKIFM 339 (514)
Q Consensus 307 ----~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 339 (514)
..|++ .+|..|...|...|+++.|+++.+.+..
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 23554 5799999999999999999999998874
No 68
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.03 E-value=2.7e-07 Score=87.79 Aligned_cols=218 Identities=12% Similarity=-0.025 Sum_probs=145.9
Q ss_pred CChhHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 040365 121 GLFDEGLKFFRQMLIAK-IKPR--HVSFSSIMPACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLAR 197 (514)
Q Consensus 121 g~~~~A~~l~~~m~~~g-~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~ 197 (514)
+..+.++.-+.++.... ..|+ ...|......+...|+.++|...+.+.++.. +.+...++.+...|...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45566666666666432 2222 2345556666777888888888888887765 556778888888889999999998
Q ss_pred HHHHhCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcC
Q 040365 198 CIFDKMD---LHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYG 274 (514)
Q Consensus 198 ~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 274 (514)
..|++.. ..+..+|..+...+...|++++|++.|++..+. .|+..........+...++.++|...|..... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~ 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--K 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--h
Confidence 8888874 235677888888888899999999999998874 45543222222234456789999999976543 2
Q ss_pred CCCCHhHHHHHHHHHHhcCCHHHH--HHHHHh-CCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 040365 275 IAPSFEHYAAVADLLGRAGKLQEA--YEFISN-MHAG-----PTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMG 346 (514)
Q Consensus 275 ~~p~~~~~~~li~~~~~~g~~~~A--~~~~~~-m~~~-----p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 346 (514)
..|+... ..++.. ..|++.++ .+.+.+ .... .....|..|...+...|++++|+..|+++++.+|++..
T Consensus 195 ~~~~~~~-~~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 195 LDKEQWG-WNIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred CCccccH-HHHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence 2333222 223333 34444333 322222 1111 13457999999999999999999999999999976543
No 69
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.95 E-value=4.8e-06 Score=79.74 Aligned_cols=218 Identities=12% Similarity=0.003 Sum_probs=171.2
Q ss_pred HHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHH
Q 040365 117 CVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLA 196 (514)
Q Consensus 117 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A 196 (514)
+.-.|+...|...|+..+.....++. .|.-+..+|....+.++..+.|+...+.+ +.|..+|..-..++.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence 34578889999999998886433332 27777888999999999999999999886 56677888888888899999999
Q ss_pred HHHHHhCCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhc
Q 040365 197 RCIFDKMDL---HDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDY 273 (514)
Q Consensus 197 ~~~~~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 273 (514)
..-|++... .++.+|-.+--+.-+.++++++...|++..+. ++--...|+.....+...++++.|.+.|+....
T Consensus 414 ~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~-- 490 (606)
T KOG0547|consen 414 IADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE-- 490 (606)
T ss_pred HHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh--
Confidence 999998763 35667777777777889999999999999886 444567888899999999999999999998753
Q ss_pred CCCCC---------HhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 040365 274 GIAPS---------FEHYAAVADLLGRAGKLQEAYEFISNMH-AGP-TENVWLTLLSACRVHKNVELAGKVAEKIFMID 341 (514)
Q Consensus 274 ~~~p~---------~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 341 (514)
+.|+ +.+.-.++-.- -.+++..|.+++++.. ..| ....+-+|...-.+.|+.++|+++|++...+-
T Consensus 491 -LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 491 -LEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred -hccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3443 22222222222 3389999999999874 333 45678999999999999999999999987763
No 70
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.94 E-value=1.2e-07 Score=82.00 Aligned_cols=162 Identities=16% Similarity=0.145 Sum_probs=135.4
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHH
Q 040365 210 SWTAVIMGNALHGNAHDAISLFEQMEKDGVKPN-SVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAP-SFEHYAAVAD 287 (514)
Q Consensus 210 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~ 287 (514)
+...+.-+|.+.|+...|..-+++.++. .|+ .-++..+...|.+.|..+.|.+.|+... .+.| +..+.|....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhH
Confidence 3445667788888888888888888875 454 4678888888889999999999988775 4566 5677788888
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhH
Q 040365 288 LLGRAGKLQEAYEFISNMHAGPT----ENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKD 363 (514)
Q Consensus 288 ~~~~~g~~~~A~~~~~~m~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 363 (514)
-+|..|++++|...|++....|+ ..+|..+.-+..+.|+.+.|...+++.++.+|+.+.+...+.....+.|++-.
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 88999999999999988754443 46788888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCC
Q 040365 364 AASLRVFMRNKGM 376 (514)
Q Consensus 364 a~~~~~~m~~~g~ 376 (514)
|...++....++.
T Consensus 192 Ar~~~~~~~~~~~ 204 (250)
T COG3063 192 ARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHhccc
Confidence 9999998887765
No 71
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.92 E-value=5.1e-08 Score=88.20 Aligned_cols=220 Identities=10% Similarity=-0.018 Sum_probs=114.1
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHCCCHHHHHHHHccCCC--C-ChhHHHHHHHHHHHCC
Q 040365 45 SSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSSLINMYAKCARVEDSHRLFCLLPV--K-DAISWNSIIAGCVQNG 121 (514)
Q Consensus 45 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~-d~~~~~~li~~~~~~g 121 (514)
..+.+.|.+.|-+.+|..-++..++. .|-+.+|-.|-..|.+-.+...|+.+|.+-.+ | |+.-..-+.+.+-..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 33444555555555555555555444 34444455555555555555555555554432 2 2222233444455555
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 040365 122 LFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFD 201 (514)
Q Consensus 122 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~ 201 (514)
+.++|+++|+...+.. +.+......+...|.-.++++.|..++.++++.| ..+...|+.+.-++.-.+++|-+...|+
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 5556666655554431 2233344444444455555566666666666555 2344455555555555555555555555
Q ss_pred hCC----CCCh--hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHh
Q 040365 202 KMD----LHDI--VSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSM 269 (514)
Q Consensus 202 ~m~----~~d~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 269 (514)
+.. .++. ..|..+-......|++.-|.+.|+-....+ .-+...++.|.-.-.+.|++++|..+++..
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 432 2322 345555555555666666666666555432 113355666665566667777777776655
No 72
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.91 E-value=4.8e-06 Score=84.04 Aligned_cols=149 Identities=17% Similarity=0.101 Sum_probs=84.4
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCChh-hHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHCC-
Q 040365 13 IVGLARNGLYEEALNIVRQMGNVNLKPDSF-TLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSSLINMYAKCA- 90 (514)
Q Consensus 13 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g- 90 (514)
...+...|++++|++.+..-... -+|.. .+......+.+.|+.++|..++..+++.+ |.+..-|..|..+..-..
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcc
Confidence 34567789999999999775443 35544 45666777889999999999999999886 556666666666653332
Q ss_pred ----CHHHHHHHHccCCCC--ChhHHHHHHHHHHHCCCh-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHH
Q 040365 91 ----RVEDSHRLFCLLPVK--DAISWNSIIAGCVQNGLF-DEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLGKQ 163 (514)
Q Consensus 91 ----~~~~A~~~f~~~~~~--d~~~~~~li~~~~~~g~~-~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 163 (514)
+.+....+++++... ...+.-.+.-.+.....+ ..+...+..+...|+++ +|+.+-..|......+-..+
T Consensus 88 ~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHH
Confidence 456666666665422 111111111111111122 23444556666677644 34444444544443333333
Q ss_pred HHHH
Q 040365 164 LHGC 167 (514)
Q Consensus 164 ~~~~ 167 (514)
+...
T Consensus 165 l~~~ 168 (517)
T PF12569_consen 165 LVEE 168 (517)
T ss_pred HHHH
Confidence 3333
No 73
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.87 E-value=9e-06 Score=79.93 Aligned_cols=197 Identities=11% Similarity=-0.025 Sum_probs=103.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCCH--HHHHHHHHH
Q 040365 179 IASSLLDMYAKCGNIRLARCIFDKMD---LHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGV-KPNS--VAFVAVLTA 252 (514)
Q Consensus 179 ~~~~li~~y~k~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~--~t~~~ll~a 252 (514)
....+...+...|++++|.+.+++.. +.+...+..+...|...|++++|..++++...... .|+. ..|..+...
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~ 195 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALF 195 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHH
Confidence 33344555666666666666666653 23345556666666666666666666666555321 1222 223345556
Q ss_pred HHccCCHHHHHHHHHHhHHhcCCCCCHhHH-H--HHHHHHHhcCCHHHHHHH---HHh---C-CCCCCHHHHHHHHHHHH
Q 040365 253 CSHAGLIDKAWSYFNSMTKDYGIAPSFEHY-A--AVADLLGRAGKLQEAYEF---ISN---M-HAGPTENVWLTLLSACR 322 (514)
Q Consensus 253 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-~--~li~~~~~~g~~~~A~~~---~~~---m-~~~p~~~~~~~ll~~~~ 322 (514)
+...|++++|..+++.........+..... + .++..+...|..+.+.+. ... . +.............++.
T Consensus 196 ~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 275 (355)
T cd05804 196 YLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALA 275 (355)
T ss_pred HHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHh
Confidence 666677777777766653221111111111 1 222222333322222221 111 1 11111122234556677
Q ss_pred hcCCHHHHHHHHHHHHhcC-C--------CCcchHHHHHHHHHHccChhHHHHHHHHHHhCC
Q 040365 323 VHKNVELAGKVAEKIFMID-P--------NNMGAYVILSNTYAAARRWKDAASLRVFMRNKG 375 (514)
Q Consensus 323 ~~~~~~~a~~~~~~~~~~~-p--------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 375 (514)
..|+.+.|..+++.+.... . ...........++...|++++|.+.+......+
T Consensus 276 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 276 GAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred cCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 7788888888887775532 1 123444566777889999999999998877654
No 74
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.85 E-value=2.2e-06 Score=86.50 Aligned_cols=148 Identities=13% Similarity=0.102 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhc-------------CCCCCH--hHHHHHHHHHH
Q 040365 226 DAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDY-------------GIAPSF--EHYAAVADLLG 290 (514)
Q Consensus 226 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-------------~~~p~~--~~~~~li~~~~ 290 (514)
.+..++..+...|+++ +|+.|-..|......+-..+++....... .-.|+. .++.-+...|-
T Consensus 129 ~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd 205 (517)
T PF12569_consen 129 RLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYD 205 (517)
T ss_pred HHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHH
Confidence 3444556666677553 45555555555544444444444443211 012333 24455677788
Q ss_pred hcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHH
Q 040365 291 RAGKLQEAYEFISNMH-AGPT-ENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLR 368 (514)
Q Consensus 291 ~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 368 (514)
+.|++++|++++++.. ..|+ +..|..-...+...|++++|...++.+.++++.|-..-+-.+..+.++|+.++|.++.
T Consensus 206 ~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~ 285 (517)
T PF12569_consen 206 YLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTA 285 (517)
T ss_pred HhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 8899999999988753 3455 5667777888889999999999999999998887766667778888999999999999
Q ss_pred HHHHhCCC
Q 040365 369 VFMRNKGM 376 (514)
Q Consensus 369 ~~m~~~g~ 376 (514)
......+.
T Consensus 286 ~~Ftr~~~ 293 (517)
T PF12569_consen 286 SLFTREDV 293 (517)
T ss_pred HhhcCCCC
Confidence 88877765
No 75
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.82 E-value=2.1e-05 Score=77.30 Aligned_cols=198 Identities=10% Similarity=-0.043 Sum_probs=120.0
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHhhCCC-CCChhh-HHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHH--
Q 040365 5 DLVSWNTVIVGLARNGLYEEALNIVRQMGNVNL-KPDSFT-LSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGS-- 80 (514)
Q Consensus 5 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-- 80 (514)
....|..+...+...|+.+.+...+........ .++... .......+...|++++|.++++.+++.. |.+..+++
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~ 83 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLH 83 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHh
Confidence 345677777777777888887766666554321 122211 1112233456788999999988888764 44544444
Q ss_pred -HHHHHHHHCCCHHHHHHHHccCCCC---ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 040365 81 -SLINMYAKCARVEDSHRLFCLLPVK---DAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLT 156 (514)
Q Consensus 81 -~li~~~~~~g~~~~A~~~f~~~~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~ 156 (514)
.+.......+..+.+.+.++..... +...+..+...+...|++++|...+++..+.. +.+...+..+..++...|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC
Confidence 2222223345566666666543222 22233445567778888888888888887753 334556666777777788
Q ss_pred ChHHHHHHHHHHHHcCC-CCcH--HHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 040365 157 TLHLGKQLHGCIIRNGF-DDNM--FIASSLLDMYAKCGNIRLARCIFDKMD 204 (514)
Q Consensus 157 ~~~~a~~~~~~~~~~~~-~~~~--~~~~~li~~y~k~g~~~~A~~~~~~m~ 204 (514)
++++|.+.+....+... .++. ..+..+...|...|++++|..+|++..
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 88888888777766431 1222 234456667777777777777777754
No 76
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.82 E-value=4.9e-05 Score=75.50 Aligned_cols=364 Identities=13% Similarity=0.083 Sum_probs=204.3
Q ss_pred hcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHCCCHHHHHH
Q 040365 18 RNGLYEEALNIVRQMGNVNLKPDSFTLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSSLINMYAKCARVEDSHR 97 (514)
Q Consensus 18 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 97 (514)
.-|+-++|....+.-.+.. .-+.+.|..+.-......++++|...+..+++.+ +.|..++.-|.-.-++.|+++....
T Consensus 53 ~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~ 130 (700)
T KOG1156|consen 53 CLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLE 130 (700)
T ss_pred cccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHH
Confidence 3466677776666555432 2344556665555566677777777777777765 5566666655555555566555444
Q ss_pred HHccCC---CCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCC-CCCCHHHHHHHH------HHHhccCChHHHHHHHHH
Q 040365 98 LFCLLP---VKDAISWNSIIAGCVQNGLFDEGLKFFRQMLIAK-IKPRHVSFSSIM------PACAHLTTLHLGKQLHGC 167 (514)
Q Consensus 98 ~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll------~~~~~~~~~~~a~~~~~~ 167 (514)
.-.... ......|..+..++.-.|+...|..++++..+.. -.|+...|.-.. ......|.++.|.+.+..
T Consensus 131 tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~ 210 (700)
T KOG1156|consen 131 TRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLD 210 (700)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHh
Confidence 333322 2344567777777777777777777777766543 234544443222 123445556666555544
Q ss_pred HHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCC--CChhHHHHH-HHHHHhCCC---------------------
Q 040365 168 IIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMDL--HDIVSWTAV-IMGNALHGN--------------------- 223 (514)
Q Consensus 168 ~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~--~d~~~~~~l-i~~~~~~g~--------------------- 223 (514)
.... +......-..-.+.+.+.|++++|..++..+.. ||-..|+-. ..++.+--+
T Consensus 211 ~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~ 289 (700)
T KOG1156|consen 211 NEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHEC 289 (700)
T ss_pred hhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccccc
Confidence 3322 122233333445566677777777777766653 333333222 222211111
Q ss_pred --------------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH----HHHHHHHHhHHh--------cCC-C
Q 040365 224 --------------AHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLID----KAWSYFNSMTKD--------YGI-A 276 (514)
Q Consensus 224 --------------~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~----~a~~~~~~m~~~--------~~~-~ 276 (514)
.+..-+++..+.+.|++|- |..+.+.+-.-...+ -+..+...+... ... +
T Consensus 290 p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~ 366 (700)
T KOG1156|consen 290 PRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEP 366 (700)
T ss_pred chhccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCC
Confidence 1122233444555555432 222222222211111 122222222110 001 3
Q ss_pred CCHh--HHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 040365 277 PSFE--HYAAVADLLGRAGKLQEAYEFISNMHA-GPTEN-VWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILS 352 (514)
Q Consensus 277 p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~-~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 352 (514)
|+.. ++-.++..+-+.|+++.|..+++.... .|+.+ .|..=...+...|++++|...++++.+++..|...-.--+
T Consensus 367 PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcA 446 (700)
T KOG1156|consen 367 PTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCA 446 (700)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHH
Confidence 4443 445677889999999999999998753 35543 3444557788899999999999999999966543333456
Q ss_pred HHHHHccChhHHHHHHHHHHhCCCc-----cCCcccEEEE
Q 040365 353 NTYAAARRWKDAASLRVFMRNKGMK-----KTPACSWIEV 387 (514)
Q Consensus 353 ~~~~~~g~~~~a~~~~~~m~~~g~~-----~~~~~s~~~~ 387 (514)
+-..++.+.++|.++.....+.|.. .+..|.|..+
T Consensus 447 KYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~ 486 (700)
T KOG1156|consen 447 KYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQL 486 (700)
T ss_pred HHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhH
Confidence 6677899999999999999877641 1235677654
No 77
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.78 E-value=6.2e-07 Score=87.49 Aligned_cols=219 Identities=11% Similarity=0.055 Sum_probs=171.7
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHHHH
Q 040365 152 CAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMD---LHDIVSWTAVIMGNALHGNAHDAI 228 (514)
Q Consensus 152 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~ 228 (514)
+.+.|++.+|.-.|+..++.. +.+...|--|.-.....++-..|+..+++.. ..|....-+|.-.|...|.-.+|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 356778888888888888775 6678888888888888888888888887765 345667777778888889889999
Q ss_pred HHHHHHHHcCCC--------CCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHH
Q 040365 229 SLFEQMEKDGVK--------PNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYE 300 (514)
Q Consensus 229 ~l~~~m~~~g~~--------p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 300 (514)
..++.-.....+ ++..+-.. ........+....++|-.+....+..+|++++.+|.-.|--.|.+++|.+
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 988887653211 01000000 12223334556667777777766766888899999999999999999999
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHh
Q 040365 301 FISNM-HAGP-TENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRN 373 (514)
Q Consensus 301 ~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 373 (514)
-|+.. ..+| |..+||-|...+....+.++|+..|.+++++.|.=.++...|+-.|...|.+++|.+.|-....
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99986 4556 6788999999999999999999999999999999999999999999999999999998876654
No 78
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.76 E-value=2.7e-05 Score=71.45 Aligned_cols=192 Identities=10% Similarity=0.070 Sum_probs=116.2
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhC---CCCChhHHHHHHHHHHhCCCh
Q 040365 148 IMPACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKM---DLHDIVSWTAVIMGNALHGNA 224 (514)
Q Consensus 148 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m---~~~d~~~~~~li~~~~~~g~~ 224 (514)
.+..+...|+...+......+++.. +.|...+..-..+|...|++..|+.-+... ...+..+..-+-..+..-|+.
T Consensus 161 ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~ 239 (504)
T KOG0624|consen 161 QLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDA 239 (504)
T ss_pred HHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhH
Confidence 3445566788888888888888765 678888888888888888888887665544 355666666777777788888
Q ss_pred HHHHHHHHHHHHcCCCCCHHH-H---HHH---H------HHHHccCCHHHHHHHHHHhHHhcCCCCC-----HhHHHHHH
Q 040365 225 HDAISLFEQMEKDGVKPNSVA-F---VAV---L------TACSHAGLIDKAWSYFNSMTKDYGIAPS-----FEHYAAVA 286 (514)
Q Consensus 225 ~~A~~l~~~m~~~g~~p~~~t-~---~~l---l------~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li 286 (514)
+.++...++-++ +.||... | ..| . ......+.+.++..-.+...+. .|. ...+..+-
T Consensus 240 ~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c 314 (504)
T KOG0624|consen 240 ENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLC 314 (504)
T ss_pred HHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheee
Confidence 888888887776 4676532 1 111 0 1112234444444444444322 222 22333444
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 040365 287 DLLGRAGKLQEAYEFISNM-HAGPT-ENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNM 345 (514)
Q Consensus 287 ~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 345 (514)
.++...|++.+|++.-.+. ...|| +.++.--..+|.....++.|+.-|+++.+.+++|.
T Consensus 315 ~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 315 TCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNT 375 (504)
T ss_pred ecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence 4555556666666555543 22333 55555555666666666666666666666666554
No 79
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.75 E-value=2e-07 Score=87.55 Aligned_cols=80 Identities=16% Similarity=0.114 Sum_probs=41.2
Q ss_pred CHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCh-hHHHHHHHH
Q 040365 294 KLQEAYEFISNMHAG--PTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRW-KDAASLRVF 370 (514)
Q Consensus 294 ~~~~A~~~~~~m~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~a~~~~~~ 370 (514)
.+.+|..+|+++..+ +++.+.+.+..++...|++++|+.++++.++.+|.++.+...++.+....|+. +.+.+.+.+
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 345555555554322 44455555555555556666666666655555566655555565555555555 444555555
Q ss_pred HHh
Q 040365 371 MRN 373 (514)
Q Consensus 371 m~~ 373 (514)
++.
T Consensus 262 L~~ 264 (290)
T PF04733_consen 262 LKQ 264 (290)
T ss_dssp CHH
T ss_pred HHH
Confidence 443
No 80
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.75 E-value=0.00011 Score=73.03 Aligned_cols=351 Identities=13% Similarity=0.133 Sum_probs=182.8
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHhhC-CCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 040365 7 VSWNTVIVGLARNGLYEEALNIVRQMGNV-NLKPDSFTLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSSLINM 85 (514)
Q Consensus 7 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 85 (514)
..|-..+..+.+.|+.......|+..+.. .+......|...+.-....+-++.+..+++.-++. ++..-+--|.-
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHH
Confidence 35666666666666666666666665442 12222334555566555666666666666665543 22224555556
Q ss_pred HHHCCCHHHHHHHHccCCCC----------ChhHHHHHHHHHHHCCChhH---HHHHHHHHHHCCCCCCH--HHHHHHHH
Q 040365 86 YAKCARVEDSHRLFCLLPVK----------DAISWNSIIAGCVQNGLFDE---GLKFFRQMLIAKIKPRH--VSFSSIMP 150 (514)
Q Consensus 86 ~~~~g~~~~A~~~f~~~~~~----------d~~~~~~li~~~~~~g~~~~---A~~l~~~m~~~g~~p~~--~t~~~ll~ 150 (514)
+++.+++++|.+.+..+... +-..|+-+-...+++-+.-. ...+++.+.. .-||. ..|.+|..
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~--rftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIR--RFTDQLGFLWCSLAD 256 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcc--cCcHHHHHHHHHHHH
Confidence 66666666666655554321 22234444333333322111 1122222221 12222 23445555
Q ss_pred HHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc----------------C------CHHHHHHHHHhCC----
Q 040365 151 ACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKC----------------G------NIRLARCIFDKMD---- 204 (514)
Q Consensus 151 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~----------------g------~~~~A~~~~~~m~---- 204 (514)
-|.+.|.++.|..++.+.+..- .++.-++.+.+.|+.- | +++-...-|+.+.
T Consensus 257 YYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~ 334 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRP 334 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccc
Confidence 5555555555555555444331 1111122222222211 1 1122222232221
Q ss_pred -----------CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHccCCHHHHHHHHH
Q 040365 205 -----------LHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPN------SVAFVAVLTACSHAGLIDKAWSYFN 267 (514)
Q Consensus 205 -----------~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~------~~t~~~ll~a~~~~g~~~~a~~~~~ 267 (514)
..++..|..-+.. ..|+..+-...|.+..+. +.|- ...|..+...|-..|+++.|..+|+
T Consensus 335 ~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvife 411 (835)
T KOG2047|consen 335 LLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFE 411 (835)
T ss_pred hHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHH
Confidence 2244455544443 356777777788877764 4442 2346677777888888888888888
Q ss_pred HhHHhcCCCC---CHhHHHHHHHHHHhcCCHHHHHHHHHhCC---CC-----------------CCHHHHHHHHHHHHhc
Q 040365 268 SMTKDYGIAP---SFEHYAAVADLLGRAGKLQEAYEFISNMH---AG-----------------PTENVWLTLLSACRVH 324 (514)
Q Consensus 268 ~m~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~-----------------p~~~~~~~ll~~~~~~ 324 (514)
...+. ..+- -..+|..-.++=.+..+++.|+++++... .+ .+..+|...++---..
T Consensus 412 ka~~V-~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~ 490 (835)
T KOG2047|consen 412 KATKV-PYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESL 490 (835)
T ss_pred HhhcC-CccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHh
Confidence 77542 2111 13456666666677788888888887652 11 1234566666666677
Q ss_pred CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHH
Q 040365 325 KNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRV 369 (514)
Q Consensus 325 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 369 (514)
|-++....++++++++.--.|..-...+..+-...-++++.++++
T Consensus 491 gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YE 535 (835)
T KOG2047|consen 491 GTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYE 535 (835)
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 778888888888887764344343444444445555677777775
No 81
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.75 E-value=1.2e-06 Score=93.25 Aligned_cols=201 Identities=13% Similarity=0.101 Sum_probs=170.2
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCCC--------ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHH
Q 040365 174 DDNMFIASSLLDMYAKCGNIRLARCIFDKMDLH--------DIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVA 245 (514)
Q Consensus 174 ~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~--------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 245 (514)
|.....|-..|......+++++|++++++.... -.-.|.++++.-...|.-+...++|++..+.- -....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHH
Confidence 455677888888899999999999999987521 34579999988888898899999999998741 12356
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC---CHHHHHHHHHHH
Q 040365 246 FVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISNMH-AGP---TENVWLTLLSAC 321 (514)
Q Consensus 246 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p---~~~~~~~ll~~~ 321 (514)
|..|...|.+.+.+++|.++++.|.++++ -....|...++.+.+..+-++|..++.+.- .-| ......-.+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 88999999999999999999999999877 567889999999999999999999998752 223 344555566667
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHhCCCcc
Q 040365 322 RVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRNKGMKK 378 (514)
Q Consensus 322 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 378 (514)
.++|+.+++..+|+.++...|.....|+.++++-.+.|..+.++.+|++....++.+
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 899999999999999999999999999999999999999999999999999988763
No 82
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.75 E-value=2.6e-05 Score=86.81 Aligned_cols=324 Identities=10% Similarity=-0.028 Sum_probs=205.0
Q ss_pred hCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHCCCHHHHHHHHccCC----CC----C--hh--HHHHHHHHHHH
Q 040365 52 ADYVDVIKGKEIHGYAIRHGLDANVCIGSSLINMYAKCARVEDSHRLFCLLP----VK----D--AI--SWNSIIAGCVQ 119 (514)
Q Consensus 52 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~----~~----d--~~--~~~~li~~~~~ 119 (514)
...|+...+...+..+.......+..........+...|++++|...++... .. + .. ....+...+..
T Consensus 385 ~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 464 (903)
T PRK04841 385 FNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN 464 (903)
T ss_pred HhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh
Confidence 3456666665555544211112223333445556677899999888776542 11 1 11 11223345568
Q ss_pred CCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCChHHHHHHHHHHHHcCC---CC--cHHHHHHHHHHHHhc
Q 040365 120 NGLFDEGLKFFRQMLIAKIKPRH----VSFSSIMPACAHLTTLHLGKQLHGCIIRNGF---DD--NMFIASSLLDMYAKC 190 (514)
Q Consensus 120 ~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~li~~y~k~ 190 (514)
.|++++|...+++....-...+. ...+.+...+...|+++.|...+.......- .+ .......+...+...
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 89999999999987663111221 2334455566788999999999888765311 11 223455667788899
Q ss_pred CCHHHHHHHHHhCCC-------C----ChhHHHHHHHHHHhCCChHHHHHHHHHHHHc--CCCCC--HHHHHHHHHHHHc
Q 040365 191 GNIRLARCIFDKMDL-------H----DIVSWTAVIMGNALHGNAHDAISLFEQMEKD--GVKPN--SVAFVAVLTACSH 255 (514)
Q Consensus 191 g~~~~A~~~~~~m~~-------~----d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~--~~t~~~ll~a~~~ 255 (514)
|+++.|...+++... + ....+..+...+...|++++|...+.+.... ...|. ...+..+......
T Consensus 545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 624 (903)
T PRK04841 545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA 624 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH
Confidence 999999998876531 1 1223445555677789999999999887652 11222 2334445567778
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCCHhHH-----HHHHHHHHhcCCHHHHHHHHHhCCCC--CCH----HHHHHHHHHHHhc
Q 040365 256 AGLIDKAWSYFNSMTKDYGIAPSFEHY-----AAVADLLGRAGKLQEAYEFISNMHAG--PTE----NVWLTLLSACRVH 324 (514)
Q Consensus 256 ~g~~~~a~~~~~~m~~~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~--p~~----~~~~~ll~~~~~~ 324 (514)
.|+.++|...+........-......+ ...+..+...|+.+.|.+++...... ... ..+..+..++...
T Consensus 625 ~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 704 (903)
T PRK04841 625 RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILL 704 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHc
Confidence 999999999988874321111111111 11224456689999999998775421 111 1245567778899
Q ss_pred CCHHHHHHHHHHHHhcC------CCCcchHHHHHHHHHHccChhHHHHHHHHHHhCC
Q 040365 325 KNVELAGKVAEKIFMID------PNNMGAYVILSNTYAAARRWKDAASLRVFMRNKG 375 (514)
Q Consensus 325 ~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 375 (514)
|+.++|...++++.... +....++..+..+|...|+.++|...+.+..+..
T Consensus 705 g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 705 GQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 99999999999987752 1223467788899999999999999999887654
No 83
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.75 E-value=1.4e-06 Score=81.81 Aligned_cols=161 Identities=11% Similarity=0.072 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--
Q 040365 178 FIASSLLDMYAKCGNIRLARCIFDKMDLHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSH-- 255 (514)
Q Consensus 178 ~~~~~li~~y~k~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~-- 255 (514)
.+......+|...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+. . +..+...+..++..
T Consensus 103 ~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~-eD~~l~qLa~awv~l~ 177 (290)
T PF04733_consen 103 IVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--D-EDSILTQLAEAWVNLA 177 (290)
T ss_dssp HHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--S-CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C-CcHHHHHHHHHHHHHH
Confidence 33333445567778888888877765 45566667778888888888888888888764 3 33444445544432
Q ss_pred --cCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhcCCH-HHH
Q 040365 256 --AGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISNMH-AG-PTENVWLTLLSACRVHKNV-ELA 330 (514)
Q Consensus 256 --~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~-p~~~~~~~ll~~~~~~~~~-~~a 330 (514)
.+.+.+|..+|+++.. ...+++.+.+.+.-+....|++++|.+++++.- .. .|..+...++......|+. +.+
T Consensus 178 ~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~ 255 (290)
T PF04733_consen 178 TGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAA 255 (290)
T ss_dssp HTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHH
T ss_pred hCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHH
Confidence 3468889999998854 345677888888888888999999998888753 22 3556777778777777877 677
Q ss_pred HHHHHHHHhcCCCCc
Q 040365 331 GKVAEKIFMIDPNNM 345 (514)
Q Consensus 331 ~~~~~~~~~~~p~~~ 345 (514)
.+.+.++....|+.+
T Consensus 256 ~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 256 ERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHCHHHTTTSH
T ss_pred HHHHHHHHHhCCCCh
Confidence 888888888888754
No 84
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.73 E-value=6.1e-06 Score=71.69 Aligned_cols=188 Identities=15% Similarity=0.103 Sum_probs=81.0
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHHHH
Q 040365 152 CAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMD---LHDIVSWTAVIMGNALHGNAHDAI 228 (514)
Q Consensus 152 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~ 228 (514)
|.+.|+...|+.-+++.++.. +.+..++..+...|-+.|+.+.|.+-|++.. ..+-...|....-+|..|++++|.
T Consensus 45 YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~ 123 (250)
T COG3063 45 YLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAM 123 (250)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHH
Confidence 333333333333333333332 2223333334444444444444444444322 222333344444444445555555
Q ss_pred HHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 040365 229 SLFEQMEKDGVKPN-SVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAP-SFEHYAAVADLLGRAGKLQEAYEFISNMH 306 (514)
Q Consensus 229 ~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 306 (514)
..|++......-|. ..||..+.-+..+.|+.+.|..+|++..+ ..| .......+.+...+.|++..|..+++...
T Consensus 124 q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~---~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~ 200 (250)
T COG3063 124 QQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE---LDPQFPPALLELARLHYKAGDYAPARLYLERYQ 200 (250)
T ss_pred HHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH---hCcCCChHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 55555444221111 23444444444455555555555554432 123 23334444455555555555555555432
Q ss_pred --CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 040365 307 --AGPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPN 343 (514)
Q Consensus 307 --~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 343 (514)
..++..+.--.+..-...||.+.+.+.=.++....|.
T Consensus 201 ~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~ 239 (250)
T COG3063 201 QRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPY 239 (250)
T ss_pred hcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 1244444444444445555555555544444444444
No 85
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.73 E-value=9.6e-06 Score=74.60 Aligned_cols=114 Identities=17% Similarity=0.151 Sum_probs=61.9
Q ss_pred CCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHH-HHHHhcCCHHHHHHH
Q 040365 257 GLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISNMHAG--PTENVWLTLL-SACRVHKNVELAGKV 333 (514)
Q Consensus 257 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--p~~~~~~~ll-~~~~~~~~~~~a~~~ 333 (514)
.++++.+.+++++ +.+=...|...+ .+..+++..|.+.+|+++|-.+..+ .|..+|.+++ .+|...++++.|-.
T Consensus 373 ~qFddVl~YlnSi-~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~- 449 (557)
T KOG3785|consen 373 FQFDDVLTYLNSI-ESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWD- 449 (557)
T ss_pred HHHHHHHHHHHHH-HHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHH-
Confidence 3455555555555 222222233332 3556666777777777777665421 3555665544 34556666666543
Q ss_pred HHHHHhcC-CCCc-chHHHHHHHHHHccChhHHHHHHHHHHhCC
Q 040365 334 AEKIFMID-PNNM-GAYVILSNTYAAARRWKDAASLRVFMRNKG 375 (514)
Q Consensus 334 ~~~~~~~~-p~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 375 (514)
.++..+ |.+. .....+++-|.+++.+--|.+.|..+...+
T Consensus 450 --~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD 491 (557)
T KOG3785|consen 450 --MMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILD 491 (557)
T ss_pred --HHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC
Confidence 334443 2222 223345566777777777777777776544
No 86
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=8.4e-05 Score=69.99 Aligned_cols=56 Identities=18% Similarity=0.096 Sum_probs=28.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHH
Q 040365 315 LTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFM 371 (514)
Q Consensus 315 ~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 371 (514)
+.+...|...|..+.++.++++.+...|++ ...+.|...+...+.+.+|...|...
T Consensus 442 ~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~A 497 (564)
T KOG1174|consen 442 NLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKA 497 (564)
T ss_pred HHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 344444555555555555555555544432 34555555555555555555555443
No 87
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.69 E-value=5.6e-06 Score=82.76 Aligned_cols=102 Identities=16% Similarity=0.176 Sum_probs=43.2
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 040365 120 NGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCI 199 (514)
Q Consensus 120 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~ 199 (514)
..++.+|+.+++.++... .-..-|..+..-|+..|+++.|+++|.+. + .++--|+||.+.|++++|.++
T Consensus 745 akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---~------~~~dai~my~k~~kw~da~kl 813 (1636)
T KOG3616|consen 745 AKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---D------LFKDAIDMYGKAGKWEDAFKL 813 (1636)
T ss_pred hhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---c------hhHHHHHHHhccccHHHHHHH
Confidence 334444444444443322 11222334444455555555555444321 1 223344555555555555555
Q ss_pred HHhCCCC--ChhHHHHHHHHHHhCCChHHHHHHHH
Q 040365 200 FDKMDLH--DIVSWTAVIMGNALHGNAHDAISLFE 232 (514)
Q Consensus 200 ~~~m~~~--d~~~~~~li~~~~~~g~~~~A~~l~~ 232 (514)
-.+...| .+++|-+-..-+-.+|++.+|.++|-
T Consensus 814 a~e~~~~e~t~~~yiakaedldehgkf~eaeqlyi 848 (1636)
T KOG3616|consen 814 AEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYI 848 (1636)
T ss_pred HHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeE
Confidence 4444322 22333333333444555555544443
No 88
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.67 E-value=0.00019 Score=70.73 Aligned_cols=142 Identities=18% Similarity=0.138 Sum_probs=99.1
Q ss_pred ChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCCHHHHHHHHH--------HhHHhcCCCCCHhHHHHHHHHHHhc
Q 040365 223 NAHDAISLFEQMEKDGVKPNS--VAFVAVLTACSHAGLIDKAWSYFN--------SMTKDYGIAPSFEHYAAVADLLGRA 292 (514)
Q Consensus 223 ~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~--------~m~~~~~~~p~~~~~~~li~~~~~~ 292 (514)
.+.+|.+++...-+. .|+. +.....+......|+++.|.+++. .+.+ .+. .+.+...++.++.+.
T Consensus 356 ~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~-~~~--~P~~V~aiv~l~~~~ 430 (652)
T KOG2376|consen 356 KHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILE-AKH--LPGTVGAIVALYYKI 430 (652)
T ss_pred HHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhh-hcc--ChhHHHHHHHHHHhc
Confidence 466777777766553 3433 445566667788999999999998 4422 233 345566788888888
Q ss_pred CCHHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhH
Q 040365 293 GKLQEAYEFISNM--------HAGPT-ENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKD 363 (514)
Q Consensus 293 g~~~~A~~~~~~m--------~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 363 (514)
++-+.|.+++.+. ..++. ..+|.-+...-.++|+-++|...++++.+.+|++..+...++.+|+.. +.+.
T Consensus 431 ~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~ek 509 (652)
T KOG2376|consen 431 KDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEK 509 (652)
T ss_pred cCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHH
Confidence 8876666666544 22222 233444555557789999999999999999999999999999999876 5666
Q ss_pred HHHHHHH
Q 040365 364 AASLRVF 370 (514)
Q Consensus 364 a~~~~~~ 370 (514)
|..+-+.
T Consensus 510 a~~l~k~ 516 (652)
T KOG2376|consen 510 AESLSKK 516 (652)
T ss_pred HHHHhhc
Confidence 6665443
No 89
>PF12854 PPR_1: PPR repeat
Probab=98.67 E-value=3.8e-08 Score=59.33 Aligned_cols=34 Identities=29% Similarity=0.542 Sum_probs=27.8
Q ss_pred cCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 040365 171 NGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMD 204 (514)
Q Consensus 171 ~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~ 204 (514)
.|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3678888888888888888888888888888874
No 90
>PF12854 PPR_1: PPR repeat
Probab=98.66 E-value=3.5e-08 Score=59.48 Aligned_cols=33 Identities=30% Similarity=0.534 Sum_probs=25.4
Q ss_pred CCCCchhHHHHHHHHHHHCCCHHHHHHHHccCC
Q 040365 71 GLDANVCIGSSLINMYAKCARVEDSHRLFCLLP 103 (514)
Q Consensus 71 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~ 103 (514)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 667777777777777777777777777777774
No 91
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.66 E-value=8.4e-05 Score=75.34 Aligned_cols=365 Identities=16% Similarity=0.091 Sum_probs=219.3
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHhCC-CCchhHHHHHH
Q 040365 5 DLVSWNTVIVGLARNGLYEEALNIVRQMGNVNLKPDSFTLSSVLPIFADYVDVIKGKEIHGYAIRHGL-DANVCIGSSLI 83 (514)
Q Consensus 5 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li 83 (514)
|...|..+.-++.+.|+++.+.+.|++....- --....|..+-..+...|.-..|..+++......- ++|+.++-..-
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 45567777777788888888888887765432 22334566666666666776777777766544321 22333333222
Q ss_pred HHHHH-CCCHHH----HHHHHccCC----CCChhHHHHHHHHHHHC-----------CChhHHHHHHHHHHHCC-CCCCH
Q 040365 84 NMYAK-CARVED----SHRLFCLLP----VKDAISWNSIIAGCVQN-----------GLFDEGLKFFRQMLIAK-IKPRH 142 (514)
Q Consensus 84 ~~~~~-~g~~~~----A~~~f~~~~----~~d~~~~~~li~~~~~~-----------g~~~~A~~l~~~m~~~g-~~p~~ 142 (514)
..|.+ .+.+++ |.++.+... ......|-.+.-+|... ....++++.+++..+.+ -.|+.
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~ 480 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLV 480 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchH
Confidence 33322 233333 333333211 12333444444444321 12345666666665533 34444
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCCC--C-------------
Q 040365 143 VSFSSIMPACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMDLH--D------------- 207 (514)
Q Consensus 143 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~--d------------- 207 (514)
.-|.++ -++..++++.|.+...+..+.+-..+...|..|.-.+...+++.+|+.+.+..... +
T Consensus 481 if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~ 558 (799)
T KOG4162|consen 481 IFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIEL 558 (799)
T ss_pred HHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhh
Confidence 444443 34556677777777777777655666667776666677777777777766554210 0
Q ss_pred --------hhHHHHHHHHHH-----------------------hCCChHHHHHHHHHHH--------HcC---------C
Q 040365 208 --------IVSWTAVIMGNA-----------------------LHGNAHDAISLFEQME--------KDG---------V 239 (514)
Q Consensus 208 --------~~~~~~li~~~~-----------------------~~g~~~~A~~l~~~m~--------~~g---------~ 239 (514)
+.|...++...- -.++..+|.+..+++. ..| +
T Consensus 559 ~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~ 638 (799)
T KOG4162|consen 559 TFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTV 638 (799)
T ss_pred hcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccc
Confidence 111111111110 0111222222211110 001 1
Q ss_pred C--CCH------HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC
Q 040365 240 K--PNS------VAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAP-SFEHYAAVADLLGRAGKLQEAYEFISNMH-AGP 309 (514)
Q Consensus 240 ~--p~~------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p 309 (514)
. |+. ..+......+...+..++|...+.+.. ++.| ....|......+...|.+++|.+.|.... ..|
T Consensus 639 ~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP 715 (799)
T KOG4162|consen 639 LPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDP 715 (799)
T ss_pred cCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCC
Confidence 1 221 123344556677788888887777663 4445 56777777788899999999999887653 445
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHH--HHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHhCC
Q 040365 310 -TENVWLTLLSACRVHKNVELAGK--VAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRNKG 375 (514)
Q Consensus 310 -~~~~~~~ll~~~~~~~~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 375 (514)
++.+..++...+.+.|+...|.. ++..+.+.+|.++..|..|...+-+.|+.++|...|....+-.
T Consensus 716 ~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 716 DHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred CCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 46788999999999999998888 9999999999999999999999999999999999999876543
No 92
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.66 E-value=0.00036 Score=69.47 Aligned_cols=152 Identities=13% Similarity=0.116 Sum_probs=93.6
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHH---HccCCHHHHHHHHHHhHHhcCCCCCH--hHHHHHHHHHHhcCC
Q 040365 221 HGNAHDAISLFEQMEKDGVKPNSV-AFVAVLTAC---SHAGLIDKAWSYFNSMTKDYGIAPSF--EHYAAVADLLGRAGK 294 (514)
Q Consensus 221 ~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~---~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~li~~~~~~g~ 294 (514)
+.-++++.++|++-...--.|+.. .|+..|.-+ ...-.++.|..+|++..+ |.+|.- ..|-.....=-+-|.
T Consensus 524 h~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~--~Cpp~~aKtiyLlYA~lEEe~GL 601 (835)
T KOG2047|consen 524 HKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD--GCPPEHAKTIYLLYAKLEEEHGL 601 (835)
T ss_pred hHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhhH
Confidence 444566666665543332235542 233333322 234578999999999876 666532 223223333345688
Q ss_pred HHHHHHHHHhCCCC--CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc--hHHHHHHHHHHccChhHHHHHH
Q 040365 295 LQEAYEFISNMHAG--PT--ENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMG--AYVILSNTYAAARRWKDAASLR 368 (514)
Q Consensus 295 ~~~A~~~~~~m~~~--p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~--~~~~l~~~~~~~g~~~~a~~~~ 368 (514)
...|++++++.... +. ...|+..|.--...=-+.....+++++++.-|++-. ...-.+..-.+.|..+.|+.++
T Consensus 602 ar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIy 681 (835)
T KOG2047|consen 602 ARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIY 681 (835)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 89999999987533 22 356888776554444456677888998887666432 2234566678899999999999
Q ss_pred HHHHhC
Q 040365 369 VFMRNK 374 (514)
Q Consensus 369 ~~m~~~ 374 (514)
.--.+-
T Consensus 682 a~~sq~ 687 (835)
T KOG2047|consen 682 AHGSQI 687 (835)
T ss_pred Hhhhhc
Confidence 765443
No 93
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.62 E-value=0.00021 Score=71.11 Aligned_cols=362 Identities=10% Similarity=0.085 Sum_probs=246.5
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 040365 6 LVSWNTVIVGLARNGLYEEALNIVRQMGNVNLKPDSFTLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSSLINM 85 (514)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 85 (514)
...|-.++..| ..+++...+.+.+..++ +.+-...|.....-.+...|+.++|....+..++.. ..+.+.|..+.-.
T Consensus 8 ~~lF~~~lk~y-E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~ 84 (700)
T KOG1156|consen 8 NALFRRALKCY-ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLL 84 (700)
T ss_pred HHHHHHHHHHH-HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHH
Confidence 34455566555 45788889999888877 333344566555555677899999999888877755 4456778888777
Q ss_pred HHHCCCHHHHHHHHccCC---CCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHH
Q 040365 86 YAKCARVEDSHRLFCLLP---VKDAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLGK 162 (514)
Q Consensus 86 ~~~~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 162 (514)
+-...++++|.+.|.... ..|...|--+--.-++.++++.....-.+..+. .+-....|.....+..-.|+...|.
T Consensus 85 ~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql-~~~~ra~w~~~Avs~~L~g~y~~A~ 163 (700)
T KOG1156|consen 85 QRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL-RPSQRASWIGFAVAQHLLGEYKMAL 163 (700)
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 777889999999998754 346667776666667888888888887777764 2334556777788888899999999
Q ss_pred HHHHHHHHcC-CCCcHHHHHHHH------HHHHhcCCHHHHHHHHHhCCCC--Chh-HHHHHHHHHHhCCChHHHHHHHH
Q 040365 163 QLHGCIIRNG-FDDNMFIASSLL------DMYAKCGNIRLARCIFDKMDLH--DIV-SWTAVIMGNALHGNAHDAISLFE 232 (514)
Q Consensus 163 ~~~~~~~~~~-~~~~~~~~~~li------~~y~k~g~~~~A~~~~~~m~~~--d~~-~~~~li~~~~~~g~~~~A~~l~~ 232 (514)
.+.+...+.. -.|+...+.-.. ....+.|.+++|.+-+...... |-. .--+....+.+.++.++|..++.
T Consensus 164 ~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~ 243 (700)
T KOG1156|consen 164 EILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYR 243 (700)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHH
Confidence 9999988765 245555544322 2346789999999888776533 222 33345566788999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHH--ccCCHHHHHHHHHHhHHhc---------------------------------CCCC
Q 040365 233 QMEKDGVKPNSVAFVAVLTACS--HAGLIDKAWSYFNSMTKDY---------------------------------GIAP 277 (514)
Q Consensus 233 ~m~~~g~~p~~~t~~~ll~a~~--~~g~~~~a~~~~~~m~~~~---------------------------------~~~p 277 (514)
.++.. .||..-|.-.+..+. -.+..+....+|....+.+ |+++
T Consensus 244 ~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~ 321 (700)
T KOG1156|consen 244 RLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS 321 (700)
T ss_pred HHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc
Confidence 99985 577766655444333 2233332224444442221 2221
Q ss_pred CHhHHHHHHHHHHhcCCHHH----HHHHHHhCC-------------CCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHH
Q 040365 278 SFEHYAAVADLLGRAGKLQE----AYEFISNMH-------------AGPTENVWLT--LLSACRVHKNVELAGKVAEKIF 338 (514)
Q Consensus 278 ~~~~~~~li~~~~~~g~~~~----A~~~~~~m~-------------~~p~~~~~~~--ll~~~~~~~~~~~a~~~~~~~~ 338 (514)
++..+...|-.-...+- +..+...+. .+|....|.. +...+-..|+++.|+...+.++
T Consensus 322 ---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI 398 (700)
T KOG1156|consen 322 ---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI 398 (700)
T ss_pred ---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence 12222222221111111 111222121 2467777765 5667889999999999999999
Q ss_pred hcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHhCCC
Q 040365 339 MIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRNKGM 376 (514)
Q Consensus 339 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 376 (514)
..-|.-+..|..-+.++..+|..++|...+++..+.+.
T Consensus 399 dHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~ 436 (700)
T KOG1156|consen 399 DHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT 436 (700)
T ss_pred ccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc
Confidence 99898888898999999999999999999999887654
No 94
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.58 E-value=0.0002 Score=66.20 Aligned_cols=88 Identities=14% Similarity=0.098 Sum_probs=42.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHH-HHHHHHHHccC
Q 040365 284 AVADLLGRAGKLQEAYEFISNMH--AGPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYV-ILSNTYAAARR 360 (514)
Q Consensus 284 ~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~ 360 (514)
++...+.-..++++.+-+++.+. ...|...--.+..+.+..|++.+|+++|-++...+-.|..+|. .|+.+|.+.|+
T Consensus 364 smAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkk 443 (557)
T KOG3785|consen 364 SMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKK 443 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCC
Confidence 34444444445555555555443 1222222233555555566666666665555444433333443 44555556665
Q ss_pred hhHHHHHHHHH
Q 040365 361 WKDAASLRVFM 371 (514)
Q Consensus 361 ~~~a~~~~~~m 371 (514)
.+-|..++-++
T Consensus 444 P~lAW~~~lk~ 454 (557)
T KOG3785|consen 444 PQLAWDMMLKT 454 (557)
T ss_pred chHHHHHHHhc
Confidence 55555554443
No 95
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=6.8e-05 Score=72.99 Aligned_cols=212 Identities=14% Similarity=0.079 Sum_probs=122.9
Q ss_pred HHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCh----------hHHHHHHHHHH
Q 040365 150 PACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMDLHDI----------VSWTAVIMGNA 219 (514)
Q Consensus 150 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~d~----------~~~~~li~~~~ 219 (514)
++.-+..+++.+.+-+....... .+..-++....+|...|.+......-+...+... .+...+..+|.
T Consensus 232 naaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~ 309 (539)
T KOG0548|consen 232 NAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYT 309 (539)
T ss_pred HHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhh
Confidence 33334444555555555444433 3444445555555555555544443333221110 01112223444
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCH-hHHHHHHHHHHhcCCHHHH
Q 040365 220 LHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSF-EHYAAVADLLGRAGKLQEA 298 (514)
Q Consensus 220 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A 298 (514)
+.++++.|+..|.+....-..||.. .+....+++........ -+.|.. .-...=...+.+.|++.+|
T Consensus 310 k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy~~A 377 (539)
T KOG0548|consen 310 KREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDYPEA 377 (539)
T ss_pred hHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCHHHH
Confidence 4555666666666554433333321 11222233333322221 223322 1111124456788999999
Q ss_pred HHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHhCC
Q 040365 299 YEFISNMH-AGP-TENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRNKG 375 (514)
Q Consensus 299 ~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 375 (514)
...+.++. ..| |...|....-+|.+.|++..|+.-.+..++++|+....|..=+.++....+|+.|.+.|.+-.+..
T Consensus 378 v~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 378 VKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99998864 234 677888899999999999999999999999999988888888888888899999999998776544
No 96
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.54 E-value=1.2e-05 Score=73.93 Aligned_cols=180 Identities=12% Similarity=0.002 Sum_probs=120.5
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHhCCC--CC-h---hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH----H
Q 040365 175 DNMFIASSLLDMYAKCGNIRLARCIFDKMDL--HD-I---VSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNS----V 244 (514)
Q Consensus 175 ~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~--~d-~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~ 244 (514)
.....+..+...|.+.|++++|...|+++.. |+ . .+|..+..+|.+.|++++|+..|+++.+. .|+. .
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHH
Confidence 3455666677778888888888888887642 22 1 35677777888888888888888888764 2322 1
Q ss_pred HHHHHHHHHHcc--------CCHHHHHHHHHHhHHhcCCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHH
Q 040365 245 AFVAVLTACSHA--------GLIDKAWSYFNSMTKDYGIAPSF-EHYAAVADLLGRAGKLQEAYEFISNMHAGPTENVWL 315 (514)
Q Consensus 245 t~~~ll~a~~~~--------g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~ 315 (514)
++..+..++... |+.++|.+.|+.+.+. .|+. ..+..+... +...... .....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~-----------~~~~~ 170 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL-----------AGKEL 170 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH-----------HHHHH
Confidence 344444455543 6777888888877654 3432 222221111 0011100 01122
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCC---cchHHHHHHHHHHccChhHHHHHHHHHHhC
Q 040365 316 TLLSACRVHKNVELAGKVAEKIFMIDPNN---MGAYVILSNTYAAARRWKDAASLRVFMRNK 374 (514)
Q Consensus 316 ~ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 374 (514)
.+...+...|+++.|...++++++..|++ +..+..++.+|.+.|++++|...++.+..+
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45667889999999999999999987654 468889999999999999999999988765
No 97
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.53 E-value=3.3e-05 Score=82.78 Aligned_cols=220 Identities=14% Similarity=0.135 Sum_probs=175.4
Q ss_pred CC-hhhHHHHHHHHhCCCChHHHHHHHHHHHHhC-C---CCchhHHHHHHHHHHHCCCHHHHHHHHccCCCC-C-hhHHH
Q 040365 39 PD-SFTLSSVLPIFADYVDVIKGKEIHGYAIRHG-L---DANVCIGSSLINMYAKCARVEDSHRLFCLLPVK-D-AISWN 111 (514)
Q Consensus 39 p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~---~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-d-~~~~~ 111 (514)
|| ...|..-|.-..+.+++++|+++.+++++.= + .--..+|.+++++-...|.-+...++|++..+- | ...|.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence 44 4578888888899999999999999998751 1 123468899999888889889999999998753 3 34688
Q ss_pred HHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCC-CCcHHHHHHHHHHHHhc
Q 040365 112 SIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLGKQLHGCIIRNGF-DDNMFIASSLLDMYAKC 190 (514)
Q Consensus 112 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~y~k~ 190 (514)
.|...|.+.+.+++|-++|+.|.+. +.-....|...+..+.+..+-+.|..++.++++.=. ...+.+..-.+.+-.++
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 9999999999999999999999875 445677888889999999999999999999887521 12455666677888999
Q ss_pred CCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCCH
Q 040365 191 GNIRLARCIFDKMD---LHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNS--VAFVAVLTACSHAGLI 259 (514)
Q Consensus 191 g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~ 259 (514)
|+.+.++.+|+... .+-...|+..|..=.++|+.+.+..+|++....++.|-. ..|.-.|..-.+.|+-
T Consensus 1614 GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde 1687 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDE 1687 (1710)
T ss_pred CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCch
Confidence 99999999999986 335678999999999999999999999999998887754 3444555444444443
No 98
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=9.5e-05 Score=66.68 Aligned_cols=290 Identities=12% Similarity=0.097 Sum_probs=165.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHH-HHHHHH
Q 040365 9 WNTVIVGLARNGLYEEALNIVRQMGNVNLKPDSFTLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSS-LINMYA 87 (514)
Q Consensus 9 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~-li~~~~ 87 (514)
+++.|.-+.+..++++|++++..-.+.. +.+...++.+...|....++..|-..++++-.. .|...-|.. -...+-
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 5667777777788888888887766653 225555666666666667777777777766543 222221111 011222
Q ss_pred HCCCHHHHH----------------------------------HHHccCC-CCChhHHHHHHHHHHHCCChhHHHHHHHH
Q 040365 88 KCARVEDSH----------------------------------RLFCLLP-VKDAISWNSIIAGCVQNGLFDEGLKFFRQ 132 (514)
Q Consensus 88 ~~g~~~~A~----------------------------------~~f~~~~-~~d~~~~~~li~~~~~~g~~~~A~~l~~~ 132 (514)
+.+.+.+|+ .+.++.+ +.+..+.+-..-...+.|++++|++-|+.
T Consensus 90 ~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqa 169 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQA 169 (459)
T ss_pred HhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHH
Confidence 333444444 4444444 23334444444445678889999999988
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC-------------cH--------HHHHHHH-------
Q 040365 133 MLIAKIKPRHVSFSSIMPACAHLTTLHLGKQLHGCIIRNGFDD-------------NM--------FIASSLL------- 184 (514)
Q Consensus 133 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~~--------~~~~~li------- 184 (514)
..+-+---....|+..+. .-+.++.+.|.+...+++++|+.. |+ ...++|+
T Consensus 170 AlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKa 248 (459)
T KOG4340|consen 170 ALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKA 248 (459)
T ss_pred HHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhh
Confidence 776443334566765554 446688888988888888876421 11 1122333
Q ss_pred HHHHhcCCHHHHHHHHHhCCCC-----ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 040365 185 DMYAKCGNIRLARCIFDKMDLH-----DIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLI 259 (514)
Q Consensus 185 ~~y~k~g~~~~A~~~~~~m~~~-----d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 259 (514)
..+.+.|+++.|.+.+-.|+.+ |++|...+.-.- ..+++.+..+-+.-+.+.+. -...||..++-.|++..-+
T Consensus 249 AIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf 326 (459)
T KOG4340|consen 249 AIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYF 326 (459)
T ss_pred hhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHH
Confidence 3456788888899988888744 566655443221 23445555554554444322 2347888888888888888
Q ss_pred HHHHHHHHHhHHhcCCC-CCHhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 040365 260 DKAWSYFNSMTKDYGIA-PSFEHYAAVADLLGRAGKLQEAYEFISNM 305 (514)
Q Consensus 260 ~~a~~~~~~m~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m 305 (514)
+.|-.++.+-.. .... .+...|+.|=....-.-..++|++-++.+
T Consensus 327 ~lAADvLAEn~~-lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 327 DLAADVLAENAH-LTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred hHHHHHHhhCcc-hhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 888877754311 0111 12333433322223334556665555443
No 99
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.52 E-value=0.0018 Score=65.99 Aligned_cols=197 Identities=12% Similarity=0.053 Sum_probs=113.7
Q ss_pred CCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHCCCHHHHHHHHccCC--C--CChhHH
Q 040365 35 VNLKPDSFTLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSSLINMYAKCARVEDSHRLFCLLP--V--KDAISW 110 (514)
Q Consensus 35 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~--~--~d~~~~ 110 (514)
..+..|...|-.+.-+....|+++.+-+.|++....- ......|+.+-..|..+|.-..|..+.+.-. + |+..+-
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~ 395 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV 395 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence 3455666777777777777777777777777766543 3345667777777777787777777776543 2 222222
Q ss_pred HHHH-HHHH-HCCChhHHHHHHHHHHHC------CCCCCHHHHHHHHHHHhcc----C-------ChHHHHHHHHHHHHc
Q 040365 111 NSII-AGCV-QNGLFDEGLKFFRQMLIA------KIKPRHVSFSSIMPACAHL----T-------TLHLGKQLHGCIIRN 171 (514)
Q Consensus 111 ~~li-~~~~-~~g~~~~A~~l~~~m~~~------g~~p~~~t~~~ll~~~~~~----~-------~~~~a~~~~~~~~~~ 171 (514)
-.|+ ..|. +.+..++++++-.+.... .++|- .|..+.-+|... . ...++.+.++..++.
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~--~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~ 473 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPR--GYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF 473 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhh--HHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc
Confidence 2222 2222 234556666555554441 12222 222222222211 1 123455556666554
Q ss_pred C-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 040365 172 G-FDDNMFIASSLLDMYAKCGNIRLARCIFDKMD----LHDIVSWTAVIMGNALHGNAHDAISLFEQMEK 236 (514)
Q Consensus 172 ~-~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~----~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 236 (514)
+ -.|++..|- .--|+-.++++.|.+...+.. ..+...|..+.-.+...+++.+|+.+.+....
T Consensus 474 d~~dp~~if~l--alq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~ 541 (799)
T KOG4162|consen 474 DPTDPLVIFYL--ALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALE 541 (799)
T ss_pred CCCCchHHHHH--HHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 4 344444443 334677788888877766543 45778888888888888888888888776654
No 100
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.52 E-value=0.00031 Score=78.24 Aligned_cols=326 Identities=10% Similarity=-0.031 Sum_probs=203.9
Q ss_pred HhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHhCC------CCc--hhHHHHHHHHHHH
Q 040365 17 ARNGLYEEALNIVRQMGNVNLKPDSFTLSSVLPIFADYVDVIKGKEIHGYAIRHGL------DAN--VCIGSSLINMYAK 88 (514)
Q Consensus 17 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~------~~~--~~~~~~li~~~~~ 88 (514)
...|++..+..++..+.......+..........+...|+++++...+..+.+.-- .+. ......+...+..
T Consensus 385 ~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 464 (903)
T PRK04841 385 FNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN 464 (903)
T ss_pred HhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh
Confidence 34456665555555542211111222223334445677899999988887765311 111 1122333455678
Q ss_pred CCCHHHHHHHHccCC----CCCh----hHHHHHHHHHHHCCChhHHHHHHHHHHHCCC---CC--CHHHHHHHHHHHhcc
Q 040365 89 CARVEDSHRLFCLLP----VKDA----ISWNSIIAGCVQNGLFDEGLKFFRQMLIAKI---KP--RHVSFSSIMPACAHL 155 (514)
Q Consensus 89 ~g~~~~A~~~f~~~~----~~d~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p--~~~t~~~ll~~~~~~ 155 (514)
.|++++|...+++.. ..+. .+++.+...+...|++++|...+.+.....- .+ ...++..+...+...
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 899999998887643 2222 3456667778889999999999988764211 11 123445566677889
Q ss_pred CChHHHHHHHHHHHHc----CCC--C-cHHHHHHHHHHHHhcCCHHHHHHHHHhCCC------C--ChhHHHHHHHHHHh
Q 040365 156 TTLHLGKQLHGCIIRN----GFD--D-NMFIASSLLDMYAKCGNIRLARCIFDKMDL------H--DIVSWTAVIMGNAL 220 (514)
Q Consensus 156 ~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~y~k~g~~~~A~~~~~~m~~------~--d~~~~~~li~~~~~ 220 (514)
|+++.|...+.+.... +.. + ....+..+...+...|++++|...+++... + ....+..+...+..
T Consensus 545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 624 (903)
T PRK04841 545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA 624 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH
Confidence 9999999998877653 211 1 233455666777888999999998887631 1 12344456667788
Q ss_pred CCChHHHHHHHHHHHHcCCC-CCHHHH-----HHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC---HhHHHHHHHHHHh
Q 040365 221 HGNAHDAISLFEQMEKDGVK-PNSVAF-----VAVLTACSHAGLIDKAWSYFNSMTKDYGIAPS---FEHYAAVADLLGR 291 (514)
Q Consensus 221 ~g~~~~A~~l~~~m~~~g~~-p~~~t~-----~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~ 291 (514)
.|++++|.+.+.+....... .....+ ...+..+...|+.+.|...+...... ..... ...+..+..++..
T Consensus 625 ~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 625 RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHHHHHHHHH
Confidence 99999999999888552111 111111 11223445588999999998765321 11111 1113456777889
Q ss_pred cCCHHHHHHHHHhCCC-------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 040365 292 AGKLQEAYEFISNMHA-------GP-TENVWLTLLSACRVHKNVELAGKVAEKIFMIDPN 343 (514)
Q Consensus 292 ~g~~~~A~~~~~~m~~-------~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 343 (514)
.|+.++|...+++... .+ ...+...+..++...|+.++|...+.+++++...
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 9999999998887531 11 1235566677889999999999999999987643
No 101
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=0.00071 Score=66.84 Aligned_cols=336 Identities=12% Similarity=0.102 Sum_probs=196.6
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHH--HHHH--HH
Q 040365 13 IVGLARNGLYEEALNIVRQMGNVNLKPDSFTLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSSL--INMY--AK 88 (514)
Q Consensus 13 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l--i~~~--~~ 88 (514)
+.-+.++|++++|+....+....+ +-|...+..-+-+..+.+.+++|..+.. ..+ -..+++.. =.+| -+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ik---k~~---~~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIK---KNG---ALLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHH---hcc---hhhhcchhhHHHHHHHHH
Confidence 456777899999999999998765 4455678888888899999999885443 222 11122222 3444 56
Q ss_pred CCCHHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHH
Q 040365 89 CARVEDSHRLFCLLPVKDAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPR-HVSFSSIMPACAHLTTLHLGKQLHGC 167 (514)
Q Consensus 89 ~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~ 167 (514)
.+..|+|.+.++.....|..+...-...+-+.|++++|+.+|+.+.+.+.+-- ...-..++.+-+. -.+. .
T Consensus 92 lnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~~----~ 163 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQVQ----L 163 (652)
T ss_pred cccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhHH----H
Confidence 79999999999966555555666666778899999999999999987753221 1111222222111 1111 1
Q ss_pred HHHcCCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHhC--------CCCC-----hh-----HHHHHHHHHHhCCChHH
Q 040365 168 IIRNGFDDN---MFIASSLLDMYAKCGNIRLARCIFDKM--------DLHD-----IV-----SWTAVIMGNALHGNAHD 226 (514)
Q Consensus 168 ~~~~~~~~~---~~~~~~li~~y~k~g~~~~A~~~~~~m--------~~~d-----~~-----~~~~li~~~~~~g~~~~ 226 (514)
+......|+ ...|| ....+...|++.+|+++++.. ...| +. .---|.-.+...|+-++
T Consensus 164 ~q~v~~v~e~syel~yN-~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 164 LQSVPEVPEDSYELLYN-TACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred HHhccCCCcchHHHHHH-HHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 222222221 12333 344677899999999999887 2111 11 12223345667899999
Q ss_pred HHHHHHHHHHcCCCCCHHH----HHHHHHHHHccCCHHH--HHHHHHHhHHhc----------CCCCCHhHHHHHHHHHH
Q 040365 227 AISLFEQMEKDGVKPNSVA----FVAVLTACSHAGLIDK--AWSYFNSMTKDY----------GIAPSFEHYAAVADLLG 290 (514)
Q Consensus 227 A~~l~~~m~~~g~~p~~~t----~~~ll~a~~~~g~~~~--a~~~~~~m~~~~----------~~~p~~~~~~~li~~~~ 290 (514)
|..++...+... .+|... -|.|+ +...-.++-. ++..++...... .-.-...--++++.+|
T Consensus 243 a~~iy~~~i~~~-~~D~~~~Av~~NNLv-a~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~- 319 (652)
T KOG2376|consen 243 ASSIYVDIIKRN-PADEPSLAVAVNNLV-ALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF- 319 (652)
T ss_pred HHHHHHHHHHhc-CCCchHHHHHhcchh-hhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 999999998864 344422 12222 2222111111 122222111000 0000111123344443
Q ss_pred hcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHH-HhcC-CHHHHHHHHHHHHhcCCCC-cchHHHHHHHHHHccChhHHHH
Q 040365 291 RAGKLQEAYEFISNMHAG-PTENVWLTLLSAC-RVHK-NVELAGKVAEKIFMIDPNN-MGAYVILSNTYAAARRWKDAAS 366 (514)
Q Consensus 291 ~~g~~~~A~~~~~~m~~~-p~~~~~~~ll~~~-~~~~-~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a~~ 366 (514)
.+.-+.+.++-...+.. |.. .+.+|+..+ .... ....+..++....+..|.+ ......++......|+|+.|.+
T Consensus 320 -tnk~~q~r~~~a~lp~~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~ 397 (652)
T KOG2376|consen 320 -TNKMDQVRELSASLPGMSPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALE 397 (652)
T ss_pred -hhhHHHHHHHHHhCCccCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 45566777777777644 444 344444443 2222 4667777777777777876 3345566777889999999999
Q ss_pred HHH
Q 040365 367 LRV 369 (514)
Q Consensus 367 ~~~ 369 (514)
++.
T Consensus 398 il~ 400 (652)
T KOG2376|consen 398 ILS 400 (652)
T ss_pred HHH
Confidence 999
No 102
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.49 E-value=5.2e-06 Score=69.64 Aligned_cols=121 Identities=15% Similarity=0.082 Sum_probs=87.9
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhCC-
Q 040365 229 SLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAP-SFEHYAAVADLLGRAGKLQEAYEFISNMH- 306 (514)
Q Consensus 229 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~- 306 (514)
.+|++..+ +.|+. +.....++...|++++|...|+... .+.| +...|..+..++.+.|++++|...|+...
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al---~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLV---MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34555544 34553 4455667778888888888888775 3355 67777788888888888888888888763
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 040365 307 -AGPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYA 356 (514)
Q Consensus 307 -~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 356 (514)
.+.+...|..+..++...|+.++|+..+++++++.|+++..+.....+..
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 23467778888888888888888888888888888888877766655543
No 103
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.48 E-value=4.8e-05 Score=68.55 Aligned_cols=286 Identities=12% Similarity=0.073 Sum_probs=149.6
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHCCCHHHHHHHHccCCC--CChhHHHH-HHHHHHHC
Q 040365 44 LSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSSLINMYAKCARVEDSHRLFCLLPV--KDAISWNS-IIAGCVQN 120 (514)
Q Consensus 44 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~d~~~~~~-li~~~~~~ 120 (514)
+.+++.-+.+..++..+.+++..-.+.. +.+....+.|..+|-...++..|-..++++.. |...-|.. -...+-+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh
Confidence 4445555555555555555555544442 22444445555555555555555555555442 22111111 12333445
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 040365 121 GLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIF 200 (514)
Q Consensus 121 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~ 200 (514)
+.+.+|+++...|... |+...-..-+.+. .....+++..++.+.
T Consensus 92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaA---------------------------------IkYse~Dl~g~rsLv 135 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PALHSRVLQLQAA---------------------------------IKYSEGDLPGSRSLV 135 (459)
T ss_pred cccHHHHHHHHHhcCC---HHHHHHHHHHHHH---------------------------------HhcccccCcchHHHH
Confidence 5555555555554331 1111111111110 011234555555555
Q ss_pred HhCC-CCChhHHHHHHHHHHhCCChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCC--
Q 040365 201 DKMD-LHDIVSWTAVIMGNALHGNAHDAISLFEQMEK-DGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIA-- 276 (514)
Q Consensus 201 ~~m~-~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~-- 276 (514)
++.+ +.+..+.+.......+.|++++|.+-|+...+ .|..| ...|+..+. ..+.++.+.|+++..++.++ |++
T Consensus 136 eQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniALa-Hy~~~qyasALk~iSEIieR-G~r~H 212 (459)
T KOG4340|consen 136 EQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLALA-HYSSRQYASALKHISEIIER-GIRQH 212 (459)
T ss_pred HhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHH-HHhhhhHHHHHHHHHHHHHh-hhhcC
Confidence 5554 23333433333334455555555555555554 23332 234443332 23345555555555554432 221
Q ss_pred -------------------CCHhHHHHHHH-------HHHhcCCHHHHHHHHHhCCCC----CCHHHHHHHHHHHHhcCC
Q 040365 277 -------------------PSFEHYAAVAD-------LLGRAGKLQEAYEFISNMHAG----PTENVWLTLLSACRVHKN 326 (514)
Q Consensus 277 -------------------p~~~~~~~li~-------~~~~~g~~~~A~~~~~~m~~~----p~~~~~~~ll~~~~~~~~ 326 (514)
|-..+-+.++. .+.+.|+++.|.+-+..||.+ .|++|...+.-. -..++
T Consensus 213 PElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~ 291 (459)
T KOG4340|consen 213 PELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDAR 291 (459)
T ss_pred CccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCC
Confidence 11122233333 345789999999999999732 567776554321 23456
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHH
Q 040365 327 VELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVF 370 (514)
Q Consensus 327 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 370 (514)
+..+.+-+.-+++++|-...+|..++-.|++..-++-|..++.+
T Consensus 292 p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 292 PTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred ccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 67777777888888887788999999999999999998888753
No 104
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.45 E-value=8.6e-06 Score=81.77 Aligned_cols=191 Identities=19% Similarity=0.238 Sum_probs=158.1
Q ss_pred CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 040365 172 GFDDNMFIASSLLDMYAKCGNIRLARCIFDKMDLHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLT 251 (514)
Q Consensus 172 ~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 251 (514)
+++|-......+...+.++|-...|..+|++. ..|.-.|.+|...|+..+|..+..+-.+ -+||..-|..+.+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 34666777788899999999999999999986 4788899999999999999999998877 4789999999999
Q ss_pred HHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCCHHH
Q 040365 252 ACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISN-MHAGP-TENVWLTLLSACRVHKNVEL 329 (514)
Q Consensus 252 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~p-~~~~~~~ll~~~~~~~~~~~ 329 (514)
..-...-+++|+++++....+ .-..+.....+.++++++.+.++. +...| ...+|-.+..+..+.++.+.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 888888899999999876432 111122223347889999998875 33343 56789999999999999999
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHhCCCc
Q 040365 330 AGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRNKGMK 377 (514)
Q Consensus 330 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 377 (514)
|...|.+...++|++...|+.+..+|.+.|+-.+|...+++..+-+..
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~ 585 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ 585 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC
Confidence 999999999999999999999999999999999999999988877743
No 105
>PLN02789 farnesyltranstransferase
Probab=98.45 E-value=8.3e-05 Score=70.90 Aligned_cols=228 Identities=11% Similarity=0.061 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccC-ChHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 040365 109 SWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVS-FSSIMPACAHLT-TLHLGKQLHGCIIRNGFDDNMFIASSLLDM 186 (514)
Q Consensus 109 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 186 (514)
+++.+-..+...++.++|+.++.++.+. .|+..| |..--.++...+ .++++...++.+++.. +.+..+|+.....
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~ 115 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHH
Confidence 3444555555666677777777666653 343332 222222333333 3455555555555443 2333334433333
Q ss_pred HHhcCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 040365 187 YAKCGNIRLARCIFDKMDLHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYF 266 (514)
Q Consensus 187 y~k~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 266 (514)
+.+.|.. ..++++.+++++.+... -|..+|.....++.+.|+++++++.+
T Consensus 116 l~~l~~~-----------------------------~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~ 165 (320)
T PLN02789 116 AEKLGPD-----------------------------AANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYC 165 (320)
T ss_pred HHHcCch-----------------------------hhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3333331 01344444444444221 13344444444444445555555555
Q ss_pred HHhHHhcCCCC-CHhHHHHHHHHHHhc---CC----HHHHHHHHHh-CCCC-CCHHHHHHHHHHHHhc----CCHHHHHH
Q 040365 267 NSMTKDYGIAP-SFEHYAAVADLLGRA---GK----LQEAYEFISN-MHAG-PTENVWLTLLSACRVH----KNVELAGK 332 (514)
Q Consensus 267 ~~m~~~~~~~p-~~~~~~~li~~~~~~---g~----~~~A~~~~~~-m~~~-p~~~~~~~ll~~~~~~----~~~~~a~~ 332 (514)
+.+.+. .| +...|+.....+.+. |. .+++.++..+ +... -|...|+.+...+... ++..+|..
T Consensus 166 ~~~I~~---d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~ 242 (320)
T PLN02789 166 HQLLEE---DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSS 242 (320)
T ss_pred HHHHHH---CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHH
Confidence 555432 12 223333322222222 11 2345555533 3333 3567788887777763 34466888
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHHcc------------------ChhHHHHHHHHHH
Q 040365 333 VAEKIFMIDPNNMGAYVILSNTYAAAR------------------RWKDAASLRVFMR 372 (514)
Q Consensus 333 ~~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~a~~~~~~m~ 372 (514)
.+.++...+|.++.+...|+..|+... ..++|.++++.+.
T Consensus 243 ~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 243 VCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred HHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 888888888888888888999887642 2367888888883
No 106
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.44 E-value=2.3e-05 Score=69.51 Aligned_cols=117 Identities=10% Similarity=0.118 Sum_probs=83.2
Q ss_pred cCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhCC-CC-CCHHHHHHHHHHH-HhcCC--HHH
Q 040365 256 AGLIDKAWSYFNSMTKDYGIAP-SFEHYAAVADLLGRAGKLQEAYEFISNMH-AG-PTENVWLTLLSAC-RVHKN--VEL 329 (514)
Q Consensus 256 ~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~-p~~~~~~~ll~~~-~~~~~--~~~ 329 (514)
.++.+++...++...+. .| +...|..+...|...|++++|...+++.. .. .+...+..+..++ ...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~~---~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 45556666666655432 34 67777777777778888888887777653 22 3566677766653 56566 478
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHhCC
Q 040365 330 AGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRNKG 375 (514)
Q Consensus 330 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 375 (514)
|..+++++++.+|+++.++..++..+...|++++|...++++.+..
T Consensus 129 A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 129 TREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 8888888888888888888888888888888888888888876653
No 107
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.40 E-value=4.6e-07 Score=55.36 Aligned_cols=35 Identities=40% Similarity=0.679 Sum_probs=32.8
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCh
Q 040365 7 VSWNTVIVGLARNGLYEEALNIVRQMGNVNLKPDS 41 (514)
Q Consensus 7 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 41 (514)
++||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 48999999999999999999999999999999984
No 108
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.39 E-value=5.6e-05 Score=67.03 Aligned_cols=154 Identities=13% Similarity=0.116 Sum_probs=115.7
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 040365 184 LDMYAKCGNIRLARCIFDKMDLHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAW 263 (514)
Q Consensus 184 i~~y~k~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 263 (514)
+-.|.+.|+++......+.+..+. ..|...++.++++..+++..+.. +.|...|..+...+...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456888888877655544332221 01223566788888888877752 446678888889999999999999
Q ss_pred HHHHHhHHhcCCCC-CHhHHHHHHHH-HHhcCC--HHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040365 264 SYFNSMTKDYGIAP-SFEHYAAVADL-LGRAGK--LQEAYEFISNMH-AGP-TENVWLTLLSACRVHKNVELAGKVAEKI 337 (514)
Q Consensus 264 ~~~~~m~~~~~~~p-~~~~~~~li~~-~~~~g~--~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 337 (514)
..|+...+ +.| +...+..+..+ +.+.|+ .++|.+++++.. ..| +...+..|...+...|++++|+..++++
T Consensus 94 ~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99998864 456 67888888886 467777 599999999874 334 6788889999999999999999999999
Q ss_pred HhcCCCCcchHH
Q 040365 338 FMIDPNNMGAYV 349 (514)
Q Consensus 338 ~~~~p~~~~~~~ 349 (514)
+++.|++..-+.
T Consensus 171 L~l~~~~~~r~~ 182 (198)
T PRK10370 171 LDLNSPRVNRTQ 182 (198)
T ss_pred HhhCCCCccHHH
Confidence 999987765443
No 109
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=0.001 Score=69.45 Aligned_cols=254 Identities=9% Similarity=0.097 Sum_probs=162.9
Q ss_pred CCHHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 040365 90 ARVEDSHRLFCLLPVKDAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLGKQLHGCII 169 (514)
Q Consensus 90 g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 169 (514)
++++.|.+.-++..+ +..|..+..+-.+.|...+|++-|-+. -|+..|.-++.++.+.|.+++-.+++....
T Consensus 1089 ~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaR 1160 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMAR 1160 (1666)
T ss_pred hhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 444444444444433 456999999999999999999887542 367789999999999999999999998888
Q ss_pred HcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCC-----------------------CChhHHHHHHHHHHhCCChHH
Q 040365 170 RNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMDL-----------------------HDIVSWTAVIMGNALHGNAHD 226 (514)
Q Consensus 170 ~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~-----------------------~d~~~~~~li~~~~~~g~~~~ 226 (514)
+..-+|.+ -+.||-+|+|.+++.+-+++...-.. .++.-|..+...+...|+++.
T Consensus 1161 kk~~E~~i--d~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~ 1238 (1666)
T KOG0985|consen 1161 KKVREPYI--DSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQG 1238 (1666)
T ss_pred HhhcCccc--hHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 87666654 45789999999998887665532210 133445556666666666666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCC--CCHhHHHHHHHHHHhcCCHHHHHHHHHh
Q 040365 227 AISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIA--PSFEHYAAVADLLGRAGKLQEAYEFISN 304 (514)
Q Consensus 227 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~ 304 (514)
|.+.-++. .+..||..+-.+|...+.+..|. | .|+. ...+-..-|+..|-..|.++|...+++.
T Consensus 1239 AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQ-----i---CGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1239 AVDAARKA------NSTKTWKEVCFACVDKEEFRLAQ-----I---CGLNIIVHADELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred HHHHhhhc------cchhHHHHHHHHHhchhhhhHHH-----h---cCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHh
Confidence 66554432 24567777777777666554432 2 2433 2445556678888888888888888876
Q ss_pred CC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHh
Q 040365 305 MH--AGPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRN 373 (514)
Q Consensus 305 m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 373 (514)
.. .+.....|+-|.-.|.+.+ ++...+.++-.... ...--+++++-++.-|.+..-++..-.+
T Consensus 1305 ~LGLERAHMgmfTELaiLYskyk-p~km~EHl~LFwsR-----vNipKviRA~eqahlW~ElvfLY~~y~e 1369 (1666)
T KOG0985|consen 1305 GLGLERAHMGMFTELAILYSKYK-PEKMMEHLKLFWSR-----VNIPKVIRAAEQAHLWSELVFLYDKYEE 1369 (1666)
T ss_pred hhchhHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 42 2344555666666665543 33333333322111 0112367777777778887777665443
No 110
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=0.00027 Score=73.58 Aligned_cols=189 Identities=16% Similarity=0.205 Sum_probs=140.7
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHH
Q 040365 152 CAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMDLHDIVSWTAVIMGNALHGNAHDAISLF 231 (514)
Q Consensus 152 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~ 231 (514)
+...+-+++|..+|... ..+....+.||+ .-++++.|.+.-++..+| ..|..+..+-.+.|...+|++-|
T Consensus 1058 ai~~~LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSy 1127 (1666)
T KOG0985|consen 1058 AIENQLYEEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESY 1127 (1666)
T ss_pred HhhhhHHHHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHH
Confidence 34444556666666543 334444444443 346677777777776655 46889999999999999999877
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH
Q 040365 232 EQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISNMHAGPTE 311 (514)
Q Consensus 232 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~ 311 (514)
-+. -|...|.-++..+++.|.+++-..++....++ .-+|.++ +.||-+|++.+++.+.++++. -||.
T Consensus 1128 ika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~ 1194 (1666)
T KOG0985|consen 1128 IKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNV 1194 (1666)
T ss_pred Hhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCc
Confidence 652 36678999999999999999999999876544 5566655 478999999999999888773 4777
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHH
Q 040365 312 NVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFM 371 (514)
Q Consensus 312 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 371 (514)
.-.....+-|...|.++.|.-++.. .+.|..|+..+...|.+..|...-++.
T Consensus 1195 A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1195 ANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred hhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 7778888889999999999888775 467777888888888887776655443
No 111
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.34 E-value=1.9e-05 Score=65.43 Aligned_cols=119 Identities=12% Similarity=0.039 Sum_probs=97.3
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 040365 278 SFEHYAAVADLLGRAGKLQEAYEFISNMH--AGPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTY 355 (514)
Q Consensus 278 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 355 (514)
+....-.+.-.+...|++++|..+|+-.- .+-+..-|..|..+|...|++++|+..+.++..++|+++.++..+..+|
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 34445556666788999999999998763 3346778999999999999999999999999999999999999999999
Q ss_pred HHccChhHHHHHHHHHHhCCCccCCcccEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHH
Q 040365 356 AAARRWKDAASLRVFMRNKGMKKTPACSWIEVKNKAYAFVAGDKSHPFYHRINEALKELLERME 419 (514)
Q Consensus 356 ~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~ 419 (514)
...|+.+.|.+.|+...... ..+|+..++.+..+..++.|.
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~-----------------------~~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRIC-----------------------GEVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHh-----------------------ccChhHHHHHHHHHHHHHHhh
Confidence 99999999999999776532 125666777766666666554
No 112
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.34 E-value=0.00083 Score=68.70 Aligned_cols=326 Identities=11% Similarity=0.064 Sum_probs=184.0
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHhhC-C-------C-CCChhhHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCc
Q 040365 5 DLVSWNTVIVGLARNGLYEEALNIVRQMGNV-N-------L-KPDSFTLSSVLPIFADYVDVIKGKEIHGYAIRHGLDAN 75 (514)
Q Consensus 5 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g-------~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 75 (514)
+-+.|..|.+.+.+..+.+-|.-.+-.|... | . .|+ .+=..+.-...+.|-+++|+.++.+..+.+
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D---- 830 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRYD---- 830 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH----
Confidence 3456888888888888887777776666431 1 1 122 222222223346677888888888777653
Q ss_pred hhHHHHHHHHHHHCCCHHHHHHHHccCCCCC-hhHHHHHHHHHHHCCChhHHHHHHHHH----------HHCC-------
Q 040365 76 VCIGSSLINMYAKCARVEDSHRLFCLLPVKD-AISWNSIIAGCVQNGLFDEGLKFFRQM----------LIAK------- 137 (514)
Q Consensus 76 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~d-~~~~~~li~~~~~~g~~~~A~~l~~~m----------~~~g------- 137 (514)
.|=..|-..|.+++|.++-+.-..-. -.||..-..-+-..++.+.|++.|++. ....
T Consensus 831 -----LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Y 905 (1416)
T KOG3617|consen 831 -----LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQY 905 (1416)
T ss_pred -----HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHH
Confidence 34455667788888887765322111 123444444444566777777777653 1111
Q ss_pred --CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCChhHHHHHH
Q 040365 138 --IKPRHVSFSSIMPACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMDLHDIVSWTAVI 215 (514)
Q Consensus 138 --~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~d~~~~~~li 215 (514)
-..|...|.--....-..|+++.|..++....+ |-+++...+-.|+.++|-++-++ ..|......+.
T Consensus 906 v~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e--sgd~AAcYhla 974 (1416)
T KOG3617|consen 906 VRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE--SGDKAACYHLA 974 (1416)
T ss_pred HHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh--cccHHHHHHHH
Confidence 011222222222223344555555555544432 23445555556777777666554 34667777888
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc---------------CCHHHHHHHHHHhHHhcCCCCCHh
Q 040365 216 MGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHA---------------GLIDKAWSYFNSMTKDYGIAPSFE 280 (514)
Q Consensus 216 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~---------------g~~~~a~~~~~~m~~~~~~~p~~~ 280 (514)
..|-..|++.+|...|.+.+. |...|..|-.. .+.-.|-.+|++. |..
T Consensus 975 R~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~----g~~---- 1037 (1416)
T KOG3617|consen 975 RMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL----GGY---- 1037 (1416)
T ss_pred HHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc----chh----
Confidence 889999999999999987653 33334333322 2333444455433 211
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------
Q 040365 281 HYAAVADLLGRAGKLQEAYEFISNM-------------HAGPTENVWLTLLSACRVHKNVELAGKVAEKIFMI------- 340 (514)
Q Consensus 281 ~~~~li~~~~~~g~~~~A~~~~~~m-------------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------- 340 (514)
...-+..|-++|.+.+|+++--+- ....|+...+.-..-+..+.++++|..++-...+.
T Consensus 1038 -~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC 1116 (1416)
T KOG3617|consen 1038 -AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLC 1116 (1416)
T ss_pred -hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223455688888888887753211 12245666666666667777777776655333221
Q ss_pred ---------------CCCC---------cchHHHHHHHHHHccChhHHHHHHH
Q 040365 341 ---------------DPNN---------MGAYVILSNTYAAARRWKDAASLRV 369 (514)
Q Consensus 341 ---------------~p~~---------~~~~~~l~~~~~~~g~~~~a~~~~~ 369 (514)
-|.. ......++..|.++|.|..|.+-|.
T Consensus 1117 ~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfT 1169 (1416)
T KOG3617|consen 1117 KNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFT 1169 (1416)
T ss_pred hcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHh
Confidence 0110 1356678888999998888776654
No 113
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.33 E-value=7.2e-05 Score=68.77 Aligned_cols=181 Identities=16% Similarity=0.032 Sum_probs=125.4
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHhCCC--C-Ch---hH
Q 040365 140 PRHVSFSSIMPACAHLTTLHLGKQLHGCIIRNGFDDN---MFIASSLLDMYAKCGNIRLARCIFDKMDL--H-DI---VS 210 (514)
Q Consensus 140 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~y~k~g~~~~A~~~~~~m~~--~-d~---~~ 210 (514)
.....+......+...|+++.|...++.+++.. +.+ ...+..+...|.+.|++++|...|+++.+ | +. .+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 345567777888899999999999999998764 222 24667788999999999999999999852 2 22 24
Q ss_pred HHHHHHHHHhC--------CChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhH
Q 040365 211 WTAVIMGNALH--------GNAHDAISLFEQMEKDGVKPNSV-AFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEH 281 (514)
Q Consensus 211 ~~~li~~~~~~--------g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 281 (514)
+..+..++.+. |+.++|.+.|+++... .|+.. ....+.... . . .... . ..
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~-~---~------~~~~-~--------~~ 168 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMD-Y---L------RNRL-A--------GK 168 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHH-H---H------HHHH-H--------HH
Confidence 55555666654 7899999999999875 45542 221111110 0 0 0000 0 11
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 040365 282 YAAVADLLGRAGKLQEAYEFISNMH----AGP-TENVWLTLLSACRVHKNVELAGKVAEKIFMIDP 342 (514)
Q Consensus 282 ~~~li~~~~~~g~~~~A~~~~~~m~----~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 342 (514)
...+...|.+.|++++|...+++.. ..| ....|..+..++...|++++|...++.+....|
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 2256677889999999999888763 122 356888999999999999999998888766544
No 114
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.32 E-value=5.4e-05 Score=74.30 Aligned_cols=246 Identities=13% Similarity=0.057 Sum_probs=177.8
Q ss_pred HHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHH
Q 040365 116 GCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRL 195 (514)
Q Consensus 116 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~ 195 (514)
-+.++|++.+|.-.|+...+.. +-+...|.-|-..-+..++-..|...+.+.++.. +.|..+.-+|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 3567888999998898887764 3455667777777777788888888888888875 5677788888888999999999
Q ss_pred HHHHHHhCCCC-ChhHHHHHH---------HHHHhCCChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 040365 196 ARCIFDKMDLH-DIVSWTAVI---------MGNALHGNAHDAISLFEQMEK-DGVKPNSVAFVAVLTACSHAGLIDKAWS 264 (514)
Q Consensus 196 A~~~~~~m~~~-d~~~~~~li---------~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 264 (514)
|.+.|+.-..- -...|...- ..+..........++|-++.. .+.++|......|.-.|--.|++++|..
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 99888875210 000000000 122222334556677777654 4544566666666667888999999999
Q ss_pred HHHHhHHhcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 040365 265 YFNSMTKDYGIAP-SFEHYAAVADLLGRAGKLQEAYEFISNM-HAGPT-ENVWLTLLSACRVHKNVELAGKVAEKIFMID 341 (514)
Q Consensus 265 ~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 341 (514)
.|+... .++| |...||.|...++...+.++|+.-|.+. ..+|+ +.++..|.-+|...|.+++|...|-.++.+.
T Consensus 452 cf~~AL---~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 452 CFEAAL---QVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHH---hcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 999886 4578 7899999999999999999999999886 45676 5678889999999999999999998888765
Q ss_pred CC-----C-----cchHHHHHHHHHHccChhHHHH
Q 040365 342 PN-----N-----MGAYVILSNTYAAARRWKDAAS 366 (514)
Q Consensus 342 p~-----~-----~~~~~~l~~~~~~~g~~~~a~~ 366 (514)
+. . ...|..|=.++...++.|-+.+
T Consensus 529 ~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 529 RKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred hcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 32 1 1356666666666666654443
No 115
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.32 E-value=9.6e-06 Score=68.03 Aligned_cols=99 Identities=12% Similarity=-0.064 Sum_probs=87.5
Q ss_pred CCCCHhHHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 040365 275 IAPSFEHYAAVADLLGRAGKLQEAYEFISNMH-A-GPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILS 352 (514)
Q Consensus 275 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 352 (514)
+.|+ .+..+...+...|++++|...|+... . +.+...|..+..++...|++++|...|+++.+++|+++.++..++
T Consensus 22 ~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg 99 (144)
T PRK15359 22 VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTG 99 (144)
T ss_pred cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 3454 35567888899999999999999863 3 357889999999999999999999999999999999999999999
Q ss_pred HHHHHccChhHHHHHHHHHHhCC
Q 040365 353 NTYAAARRWKDAASLRVFMRNKG 375 (514)
Q Consensus 353 ~~~~~~g~~~~a~~~~~~m~~~g 375 (514)
.++...|++++|...++...+..
T Consensus 100 ~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 100 VCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999887654
No 116
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.31 E-value=0.00089 Score=67.59 Aligned_cols=52 Identities=12% Similarity=-0.062 Sum_probs=32.2
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHhCC
Q 040365 322 RVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRNKG 375 (514)
Q Consensus 322 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 375 (514)
+..+-++.|..+.+-..+.. -+....-+..-+...|++++|.+.+-+..+.+
T Consensus 974 ~d~~afd~afdlari~~k~k--~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 974 ADNCAFDFAFDLARIAAKDK--MGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred hcccchhhHHHHHHHhhhcc--CccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 33444555555444433322 23455667777788999999998887776654
No 117
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=0.00027 Score=69.00 Aligned_cols=345 Identities=12% Similarity=0.033 Sum_probs=203.7
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHCCCHHH
Q 040365 15 GLARNGLYEEALNIVRQMGNVNLKPDSFTLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSSLINMYAKCARVED 94 (514)
Q Consensus 15 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 94 (514)
+....|+++.|+.+|-+.+... ++|.+.|+.-..+++..|++++|.+=-...++.. |.=..-|+-+..++.-.|++++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred hhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHhcccHHH
Confidence 4556799999999999888765 5577889988999999999999887777666653 2234567777788888899999
Q ss_pred HHHHHccCCCC---ChhHHHHHHHHHHHCCChhHHHHHHHH----HHHCCCC-----CCHHHHHHHHHHHhcc-------
Q 040365 95 SHRLFCLLPVK---DAISWNSIIAGCVQNGLFDEGLKFFRQ----MLIAKIK-----PRHVSFSSIMPACAHL------- 155 (514)
Q Consensus 95 A~~~f~~~~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~----m~~~g~~-----p~~~t~~~ll~~~~~~------- 155 (514)
|..-|.+-.+. |...++-+..++.... ++.+.|.. +...+.+ ....+|..++...-+.
T Consensus 89 A~~ay~~GL~~d~~n~~L~~gl~~a~~~~~---~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 89 AILAYSEGLEKDPSNKQLKTGLAQAYLEDY---AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHHhhcCCchHHHHHhHHHhhhHHH---HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 99999876543 4556666666661110 11111110 0000000 0111232333222110
Q ss_pred CChHHHHHHHHHHHHc--------C-------CCC------------c----------HHHHHHHHHHHHhcCCHHHHHH
Q 040365 156 TTLHLGKQLHGCIIRN--------G-------FDD------------N----------MFIASSLLDMYAKCGNIRLARC 198 (514)
Q Consensus 156 ~~~~~a~~~~~~~~~~--------~-------~~~------------~----------~~~~~~li~~y~k~g~~~~A~~ 198 (514)
.+.+...+.+..+... + ..| | ..-...|.++.-+..+++.|.+
T Consensus 166 l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q 245 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQ 245 (539)
T ss_pred cccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHH
Confidence 0111111111111100 0 011 0 0112345566666667777776
Q ss_pred HHHhCC--CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC--C----HHHHHHHHHHHHccCCHHHHHHHHHHhH
Q 040365 199 IFDKMD--LHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKP--N----SVAFVAVLTACSHAGLIDKAWSYFNSMT 270 (514)
Q Consensus 199 ~~~~m~--~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 270 (514)
-+.... ..++.-++....+|...|.+.++...-....+.|-.- + ...+..+..++.+.++.+.++.+|....
T Consensus 246 ~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaL 325 (539)
T KOG0548|consen 246 HYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKAL 325 (539)
T ss_pred HHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHh
Confidence 666554 2333445555666777777777666666655544211 1 1122234446666777888888888765
Q ss_pred HhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchH
Q 040365 271 KDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISNMH-AGPTEN-VWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAY 348 (514)
Q Consensus 271 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 348 (514)
..+ ..|+ .+.+....+++....+... ..|+.. --..=...+.+.|++..|...+.+++..+|+|+..|
T Consensus 326 te~-Rt~~---------~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lY 395 (539)
T KOG0548|consen 326 TEH-RTPD---------LLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLY 395 (539)
T ss_pred hhh-cCHH---------HHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHH
Confidence 542 2232 2334444455555444332 234331 122335678899999999999999999999999999
Q ss_pred HHHHHHHHHccChhHHHHHHHHHHhC
Q 040365 349 VILSNTYAAARRWKDAASLRVFMRNK 374 (514)
Q Consensus 349 ~~l~~~~~~~g~~~~a~~~~~~m~~~ 374 (514)
...+-+|.+.|.+..|++--+.-.+.
T Consensus 396 sNRAac~~kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 396 SNRAACYLKLGEYPEALKDAKKCIEL 421 (539)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 99999999999999999876655444
No 118
>PLN02789 farnesyltranstransferase
Probab=98.29 E-value=0.00079 Score=64.28 Aligned_cols=207 Identities=10% Similarity=-0.019 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHccCCCC---ChhHHHHHHHHHHHCC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 040365 78 IGSSLINMYAKCARVEDSHRLFCLLPVK---DAISWNSIIAGCVQNG-LFDEGLKFFRQMLIAKIKPRHVSFSSIMPACA 153 (514)
Q Consensus 78 ~~~~li~~~~~~g~~~~A~~~f~~~~~~---d~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 153 (514)
++..+-..+...++.++|+.+.+.+.+. +..+|+.--..+...| .+++++..++++.+.. +-+...|.---..+.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~ 117 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHH
Confidence 4556666777788999999999887643 4456776666667777 6799999999998864 233344554433444
Q ss_pred ccCCh--HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhC---CCh-
Q 040365 154 HLTTL--HLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMD---LHDIVSWTAVIMGNALH---GNA- 224 (514)
Q Consensus 154 ~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~---g~~- 224 (514)
+.+.. +.+..+.+.+++.. +-|..+|+...-.+.+.|++++|.+.++++. ..|..+|+.....+.+. |..
T Consensus 118 ~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccccc
Confidence 45542 55667777777665 5566777777777777777777777777765 34556677665555443 222
Q ss_pred ---HHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcc----CCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHh
Q 040365 225 ---HDAISLFEQMEKDGVKP-NSVAFVAVLTACSHA----GLIDKAWSYFNSMTKDYGIAP-SFEHYAAVADLLGR 291 (514)
Q Consensus 225 ---~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~----g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~ 291 (514)
+++++...++... .| |...|+.+...+... +...+|..++..... ..| +......|++.|+.
T Consensus 197 ~~~e~el~y~~~aI~~--~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~---~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 197 AMRDSELKYTIDAILA--NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS---KDSNHVFALSDLLDLLCE 267 (320)
T ss_pred ccHHHHHHHHHHHHHh--CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc---ccCCcHHHHHHHHHHHHh
Confidence 3455555455543 23 334555555555441 233445555554432 223 34444555555543
No 119
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.28 E-value=1.4e-06 Score=53.20 Aligned_cols=35 Identities=29% Similarity=0.625 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH
Q 040365 209 VSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNS 243 (514)
Q Consensus 209 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 243 (514)
++||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999973
No 120
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.27 E-value=1.5e-06 Score=52.73 Aligned_cols=34 Identities=24% Similarity=0.446 Sum_probs=31.2
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC
Q 040365 6 LVSWNTVIVGLARNGLYEEALNIVRQMGNVNLKP 39 (514)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 39 (514)
+.+||++|.+|++.|+++.|+++|+.|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 4689999999999999999999999999999887
No 121
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.25 E-value=0.00013 Score=73.52 Aligned_cols=212 Identities=11% Similarity=-0.043 Sum_probs=163.9
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCChhHHHHHHHHHHhCC
Q 040365 145 FSSIMPACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMD--LHDIVSWTAVIMGNALHG 222 (514)
Q Consensus 145 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~--~~d~~~~~~li~~~~~~g 222 (514)
-..+...+...|-...|..+++++. .+.-.|.+|...|+..+|..+..+-. +||...|..+.+......
T Consensus 401 q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChH
Confidence 3345556667777888888887654 45568889999999999988876554 567788888888887788
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHhcCCHHHHHHH
Q 040365 223 NAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAP-SFEHYAAVADLLGRAGKLQEAYEF 301 (514)
Q Consensus 223 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~ 301 (514)
-+++|.++++..... .-..+.....+.++++++.+.|+.-. .+.| ...+|-.+.-+..+.++++.|.+.
T Consensus 472 ~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl---~~nplq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 472 LYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSL---EINPLQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred HHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHh---hcCccchhHHHhccHHHHHHhhhHHHHHH
Confidence 899999998875432 11111222234789999999998654 4455 567888888888899999999998
Q ss_pred HHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHhCC
Q 040365 302 ISNM-HAGPT-ENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRNKG 375 (514)
Q Consensus 302 ~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 375 (514)
|..- ...|| ...||+|-.+|.+.++..+|...+.++++-+-.+...|....-...+.|.|++|.+.+.++.+..
T Consensus 542 F~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 542 FHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 8764 34554 67899999999999999999999999999887777777777777889999999999999887543
No 122
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.24 E-value=0.00046 Score=73.49 Aligned_cols=240 Identities=10% Similarity=0.055 Sum_probs=146.3
Q ss_pred CCCC-hhhHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHCCCHHHHHHHHccCCCCChhHHHHHHH
Q 040365 37 LKPD-SFTLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSSLINMYAKCARVEDSHRLFCLLPVKDAISWNSIIA 115 (514)
Q Consensus 37 ~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~d~~~~~~li~ 115 (514)
..|+ ...+..++..+...+++++|.++.+..++.. +.....|-.+...|...++.+++..+ .++.
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~ 91 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-------------NLID 91 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-------------hhhh
Confidence 4444 3467778888878888888888888666553 33333444444466666665554443 3444
Q ss_pred HHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHH
Q 040365 116 GCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRL 195 (514)
Q Consensus 116 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~ 195 (514)
......++.-...+...|... .-+...+-.+..+|.+.|+.+++.++++++++.. +.|+.+.|.+...|+.. ++++
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence 444455554444444455543 3344567778888888899999999999988887 77788888888888888 8888
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCC
Q 040365 196 ARCIFDKMDLHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGI 275 (514)
Q Consensus 196 A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 275 (514)
|.+++.+. +..|...+++.++.++|.++... .|+.+.+ -.++.+.+....+.
T Consensus 168 A~~m~~KA-----------V~~~i~~kq~~~~~e~W~k~~~~--~~~d~d~---------------f~~i~~ki~~~~~~ 219 (906)
T PRK14720 168 AITYLKKA-----------IYRFIKKKQYVGIEEIWSKLVHY--NSDDFDF---------------FLRIERKVLGHREF 219 (906)
T ss_pred HHHHHHHH-----------HHHHHhhhcchHHHHHHHHHHhc--CcccchH---------------HHHHHHHHHhhhcc
Confidence 88877654 33367777888888888888874 3443322 12222223222222
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHH
Q 040365 276 APSFEHYAAVADLLGRAGKLQEAYEFISNMH--AGPTENVWLTLLSACR 322 (514)
Q Consensus 276 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~ 322 (514)
.--..++-.+...|-..++++++..+++.+- .+.|.....-|+..|.
T Consensus 220 ~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 220 TRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 2233444445555666666667766666653 1223334444444443
No 123
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.23 E-value=0.00091 Score=64.83 Aligned_cols=175 Identities=18% Similarity=0.124 Sum_probs=123.4
Q ss_pred HHHHHHHHHhCC------CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 040365 193 IRLARCIFDKMD------LHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYF 266 (514)
Q Consensus 193 ~~~A~~~~~~m~------~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 266 (514)
+.+++..-+.++ .++.......+.+.........+..++. +... -.-...-|...+ .....|.+++|+..+
T Consensus 253 Ia~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~-~~~~-~~~~aa~YG~A~-~~~~~~~~d~A~~~l 329 (484)
T COG4783 253 IADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLA-KRSK-RGGLAAQYGRAL-QTYLAGQYDEALKLL 329 (484)
T ss_pred HHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHH-HHhC-ccchHHHHHHHH-HHHHhcccchHHHHH
Confidence 455555666665 2344455555554433332222322222 2222 011222343333 345678999999999
Q ss_pred HHhHHhcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 040365 267 NSMTKDYGIAP-SFEHYAAVADLLGRAGKLQEAYEFISNMH-AGPT-ENVWLTLLSACRVHKNVELAGKVAEKIFMIDPN 343 (514)
Q Consensus 267 ~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 343 (514)
+.+.+. .| |+.......+.+.+.++..+|.+.++++. ..|+ ...+-.+..++.+.|++.+|+++++.....+|+
T Consensus 330 ~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~ 406 (484)
T COG4783 330 QPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE 406 (484)
T ss_pred HHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Confidence 998754 45 66677778899999999999999999874 4466 677888899999999999999999999999999
Q ss_pred CcchHHHHHHHHHHccChhHHHHHHHHHHh
Q 040365 344 NMGAYVILSNTYAAARRWKDAASLRVFMRN 373 (514)
Q Consensus 344 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 373 (514)
|+..|..|..+|...|+..++...+.++-.
T Consensus 407 dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 407 DPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred CchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 999999999999999998888887776643
No 124
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.22 E-value=0.00022 Score=74.97 Aligned_cols=141 Identities=12% Similarity=0.070 Sum_probs=117.0
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CHhHHH
Q 040365 206 HDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNS-VAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAP-SFEHYA 283 (514)
Q Consensus 206 ~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~ 283 (514)
.++..+-.|.....+.|++++|..+++...+ +.||. .....+...+.+.+.+++|....++... ..| +.....
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~ 158 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREIL 158 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHH
Confidence 3577888888889999999999999999988 57775 4567788889999999999999998864 366 577788
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 040365 284 AVADLLGRAGKLQEAYEFISNMH-AGPT-ENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVIL 351 (514)
Q Consensus 284 ~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 351 (514)
.+..++.+.|++++|.++|++.. ..|+ ..+|.++..++...|+.++|...|+++++...+-...|+.+
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~ 228 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRR 228 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHH
Confidence 88889999999999999999875 3344 78899999999999999999999999998875555555543
No 125
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.18 E-value=0.00049 Score=71.80 Aligned_cols=338 Identities=15% Similarity=0.123 Sum_probs=174.3
Q ss_pred hhHHHHHHHHHhhCCCCCC-hhhHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHCCCHHHHHHHHc
Q 040365 22 YEEALNIVRQMGNVNLKPD-SFTLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSSLINMYAKCARVEDSHRLFC 100 (514)
Q Consensus 22 ~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~ 100 (514)
...|+..|-+..+.. |+ ...|..+...|....+...|.+.|..+.+.+ +.|...+.++.+.|++..+++.|..+.-
T Consensus 474 ~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 474 SALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred HHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 444555444443321 22 1245556666665556666667776666654 4555666666777777776666665532
Q ss_pred ------------------------------------cCC---CCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC
Q 040365 101 ------------------------------------LLP---VKDAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPR 141 (514)
Q Consensus 101 ------------------------------------~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 141 (514)
... ..|...|..+..+|...|++.-|+++|.+... +.|+
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~ 628 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPL 628 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcH
Confidence 211 12556777888888888888888888877655 3454
Q ss_pred HHHHHHHHH--HHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh-------cCCHHHHHHHHHhCC--------
Q 040365 142 HVSFSSIMP--ACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAK-------CGNIRLARCIFDKMD-------- 204 (514)
Q Consensus 142 ~~t~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k-------~g~~~~A~~~~~~m~-------- 204 (514)
.. |..... .-+..|.+.++...++.++... .......+.|...+.+ .|-..+|...|+.-.
T Consensus 629 s~-y~~fk~A~~ecd~GkYkeald~l~~ii~~~-s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 629 SK-YGRFKEAVMECDNGKYKEALDALGLIIYAF-SLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred hH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 32 222211 2345677777777777665432 1112222333333322 222233333333221
Q ss_pred ---CCChhHHHHHHHHHHh---CC--ChH-HHH-HHHHHHHHcCCCCCHH--------------------HHHHHHHHHH
Q 040365 205 ---LHDIVSWTAVIMGNAL---HG--NAH-DAI-SLFEQMEKDGVKPNSV--------------------AFVAVLTACS 254 (514)
Q Consensus 205 ---~~d~~~~~~li~~~~~---~g--~~~-~A~-~l~~~m~~~g~~p~~~--------------------t~~~ll~a~~ 254 (514)
..+...|-.+-.++.- .. -+. -.+ -++.+....+.-|+.. +|..+...|.
T Consensus 707 h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinyl 786 (1238)
T KOG1127|consen 707 HSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYL 786 (1238)
T ss_pred HhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHH
Confidence 1122333333222111 00 000 000 1111122222222111 1111111111
Q ss_pred c----cC----CHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHh
Q 040365 255 H----AG----LIDKAWSYFNSMTKDYGIAP-SFEHYAAVADLLGRAGKLQEAYEFISNM--HAGPTENVWLTLLSACRV 323 (514)
Q Consensus 255 ~----~g----~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~ 323 (514)
+ .+ +...|+..+...++ +.. +...|+.|.-+ ...|.+.-|..-|-.- ..+....+|..+...|.+
T Consensus 787 r~f~~l~et~~~~~~Ai~c~KkaV~---L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~ 862 (1238)
T KOG1127|consen 787 RYFLLLGETMKDACTAIRCCKKAVS---LCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLE 862 (1238)
T ss_pred HHHHHcCCcchhHHHHHHHHHHHHH---HhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEe
Confidence 1 11 11234444433322 122 33344443332 4445555555444322 123456778888888888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHH
Q 040365 324 HKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVF 370 (514)
Q Consensus 324 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 370 (514)
..|++-|...|.+...++|.|...|......-...|+.-++..+|..
T Consensus 863 n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 863 NQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred cccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999998888888888888888888775
No 126
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.16 E-value=0.00059 Score=71.86 Aligned_cols=141 Identities=11% Similarity=0.122 Sum_probs=116.0
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCC--CC-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH-HHHH
Q 040365 173 FDDNMFIASSLLDMYAKCGNIRLARCIFDKMD--LH-DIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSV-AFVA 248 (514)
Q Consensus 173 ~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~--~~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ 248 (514)
++.++..+-.|.......|.+++|..+++... .| +...+..+...+.+.+++++|+..+++.... .|+.. ....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHH
Confidence 56678888889999999999999999999886 34 5677888999999999999999999999884 56654 5566
Q ss_pred HHHHHHccCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHH
Q 040365 249 VLTACSHAGLIDKAWSYFNSMTKDYGIAP-SFEHYAAVADLLGRAGKLQEAYEFISNMH--AGPTENVWLTLL 318 (514)
Q Consensus 249 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll 318 (514)
+..++.+.|++++|..+|+++... .| +...+..+..++-+.|+.++|...|+... ..|-..-|+.++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~---~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQ---HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 667888999999999999999752 44 47888899999999999999999999874 234555555544
No 127
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.14 E-value=4e-06 Score=50.73 Aligned_cols=34 Identities=26% Similarity=0.576 Sum_probs=30.2
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCC
Q 040365 107 AISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKP 140 (514)
Q Consensus 107 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 140 (514)
+.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999998887
No 128
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.13 E-value=5.1e-05 Score=62.95 Aligned_cols=100 Identities=19% Similarity=0.212 Sum_probs=73.3
Q ss_pred CCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 040365 275 IAP-SFEHYAAVADLLGRAGKLQEAYEFISNMH--AGPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVIL 351 (514)
Q Consensus 275 ~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 351 (514)
..| +......+...+...|++++|.+.++... .+.+...|..+...+...|+++.|...++++.+.+|+++..+..+
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 91 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA 91 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 344 34455566666777778888877777652 223566777777778788888888888888888888888888888
Q ss_pred HHHHHHccChhHHHHHHHHHHhC
Q 040365 352 SNTYAAARRWKDAASLRVFMRNK 374 (514)
Q Consensus 352 ~~~~~~~g~~~~a~~~~~~m~~~ 374 (514)
+.+|...|++++|.+.++...+.
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 88888888888888888777654
No 129
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.13 E-value=0.00015 Score=70.65 Aligned_cols=122 Identities=16% Similarity=0.145 Sum_probs=101.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHh
Q 040365 246 FVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISNMH-AGP-TENVWLTLLSACRV 323 (514)
Q Consensus 246 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~ 323 (514)
..+++..+...++++.|..+|+++.+. .|+ ....++..+...++-.+|.+++++.. ..| |...+..-...|..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 446677777788999999999998654 355 44557888888888899999888763 233 56666666777899
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHH
Q 040365 324 HKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMR 372 (514)
Q Consensus 324 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 372 (514)
.++++.|..+++++.+..|.+..+|..|+.+|.+.|++++|+-.++.+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999999885
No 130
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.10 E-value=0.00056 Score=60.98 Aligned_cols=158 Identities=14% Similarity=0.078 Sum_probs=116.8
Q ss_pred chhHHHHHHHHHHHCCCHHHHHHHHccCC---CCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040365 75 NVCIGSSLINMYAKCARVEDSHRLFCLLP---VKDAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPA 151 (514)
Q Consensus 75 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 151 (514)
|..+ ..+-..+--.|+-+.+..+..... ..|....+..+....+.|++.+|+..|++...- -++|..+|+.+.-+
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaa 143 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAA 143 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHH
Confidence 4444 556666777777777777766643 235556666888888888888888888887664 36788888888888
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHHHH
Q 040365 152 CAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMD---LHDIVSWTAVIMGNALHGNAHDAI 228 (514)
Q Consensus 152 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~ 228 (514)
|.+.|+++.|+.-|.+..+.. +-+....|.|.-.|.-.|+++.|+.++.... ..|...-..+.......|++++|.
T Consensus 144 ldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~ 222 (257)
T COG5010 144 LDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAE 222 (257)
T ss_pred HHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHH
Confidence 888888888888888888764 4455666777777778888888888887653 336667777777778888888888
Q ss_pred HHHHHHH
Q 040365 229 SLFEQME 235 (514)
Q Consensus 229 ~l~~~m~ 235 (514)
++-.+-.
T Consensus 223 ~i~~~e~ 229 (257)
T COG5010 223 DIAVQEL 229 (257)
T ss_pred hhccccc
Confidence 8766543
No 131
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.09 E-value=0.0013 Score=70.16 Aligned_cols=238 Identities=7% Similarity=-0.035 Sum_probs=154.7
Q ss_pred CCCcchHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhh-HHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHH
Q 040365 3 VSDLVSWNTVIVGLARNGLYEEALNIVRQMGNVNLKPDSFT-LSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSS 81 (514)
Q Consensus 3 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 81 (514)
..+...|-.||..|...+++++|.++.+...+. .|+... |-.+...+.+.++...+..+ .+... .+...-++.
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~--~~~~~~~~~ 101 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLIDS--FSQNLKWAI 101 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhhhh--cccccchhH
Confidence 346778999999999999999999999977664 466543 32222355566666665555 23222 122112222
Q ss_pred HHHHHHHCCCHHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHH
Q 040365 82 LINMYAKCARVEDSHRLFCLLPVKDAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLG 161 (514)
Q Consensus 82 li~~~~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 161 (514)
.-..|...|++. .+..++-.+..+|-+.|+.++|..+++++.+.. +-|....+.+...++.. ++++|
T Consensus 102 ve~~~~~i~~~~-----------~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 102 VEHICDKILLYG-----------ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred HHHHHHHHHhhh-----------hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHH
Confidence 222222222211 123367788899999999999999999999876 55777888888888888 99999
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHc-CCC
Q 040365 162 KQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMDLHDIVSWTAVIMGNALHGNAHDAISLFEQMEKD-GVK 240 (514)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~ 240 (514)
.++..++++. |...+++..+.+++.++..-++.- .+.-..+.+.+... |..
T Consensus 169 ~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d-------------~d~f~~i~~ki~~~~~~~ 220 (906)
T PRK14720 169 ITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDD-------------FDFFLRIERKVLGHREFT 220 (906)
T ss_pred HHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCccc-------------chHHHHHHHHHHhhhccc
Confidence 9999887764 667778888888888875433322 22223333333332 223
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHH
Q 040365 241 PNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAP-SFEHYAAVADLLG 290 (514)
Q Consensus 241 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~ 290 (514)
--..++..+-..|....+++++..+++.+.+ ..| |.....-+++.|.
T Consensus 221 ~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~---~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 221 RLVGLLEDLYEPYKALEDWDEVIYILKKILE---HDNKNNKAREELIRFYK 268 (906)
T ss_pred hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHh---cCCcchhhHHHHHHHHH
Confidence 3345566666777888889999999988863 355 4455555555554
No 132
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.09 E-value=0.0031 Score=61.23 Aligned_cols=109 Identities=12% Similarity=0.019 Sum_probs=52.7
Q ss_pred ccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCC-hhHHHHHHHHHHhCCChHHHHHH
Q 040365 154 HLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMD--LHD-IVSWTAVIMGNALHGNAHDAISL 230 (514)
Q Consensus 154 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~--~~d-~~~~~~li~~~~~~g~~~~A~~l 230 (514)
..++++.|+..+..+++.- +.|+.......+.+.+.|+..+|.+.|+++. .|+ ...+-.+..+|.+.|++.+|+.+
T Consensus 318 ~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~ 396 (484)
T COG4783 318 LAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRI 396 (484)
T ss_pred HhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHH
Confidence 3445555555555544432 3344444444555555555555555555543 222 23344444555555555555555
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 040365 231 FEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWS 264 (514)
Q Consensus 231 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 264 (514)
+++.... .+-|...|..|..+|...|+..++..
T Consensus 397 L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 397 LNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred HHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHH
Confidence 5554443 22344455555555555555544443
No 133
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.08 E-value=0.00053 Score=61.17 Aligned_cols=152 Identities=16% Similarity=0.125 Sum_probs=80.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 040365 181 SSLLDMYAKCGNIRLARCIFDKMD---LHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAG 257 (514)
Q Consensus 181 ~~li~~y~k~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 257 (514)
..+-..|.-.|+-+.+..+..... ..|....+..+....+.|++.+|+..|++.... -+||..+++.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHcc
Confidence 334444555555555555554432 224344444555566666666666666665543 2445556666666666666
Q ss_pred CHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 040365 258 LIDKAWSYFNSMTKDYGIAP-SFEHYAAVADLLGRAGKLQEAYEFISNMHAG--PTENVWLTLLSACRVHKNVELAGKVA 334 (514)
Q Consensus 258 ~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~ 334 (514)
++++|..-|.+..+ +.| ++..++.|.-.|.-.|+++.|..++...... .|..+-..|.-+....|++++|+.+.
T Consensus 149 r~~~Ar~ay~qAl~---L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 149 RFDEARRAYRQALE---LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ChhHHHHHHHHHHH---hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 66666666655543 233 3344455555555556666666655554311 24455555555555666666665554
Q ss_pred HH
Q 040365 335 EK 336 (514)
Q Consensus 335 ~~ 336 (514)
..
T Consensus 226 ~~ 227 (257)
T COG5010 226 VQ 227 (257)
T ss_pred cc
Confidence 44
No 134
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.08 E-value=0.0036 Score=65.66 Aligned_cols=128 Identities=15% Similarity=0.168 Sum_probs=86.0
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHh-----CC--CCCCHHH
Q 040365 242 NSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAP-SFEHYAAVADLLGRAGKLQEAYEFISN-----MH--AGPTENV 313 (514)
Q Consensus 242 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~-----m~--~~p~~~~ 313 (514)
+..+|..+.-.|....+++.|...|.... .+.| +...|..........|+.-++..+|.. +. .-|+..-
T Consensus 849 ~~~~W~NlgvL~l~n~d~E~A~~af~~~q---SLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Y 925 (1238)
T KOG1127|consen 849 CHCQWLNLGVLVLENQDFEHAEPAFSSVQ---SLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQY 925 (1238)
T ss_pred chhheeccceeEEecccHHHhhHHHHhhh---hcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhH
Confidence 34455555555666778888888888764 5666 556665555555667888888887764 11 1256666
Q ss_pred HHHHHHHHHhcCCHHHHHHHH----------HHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHH
Q 040365 314 WLTLLSACRVHKNVELAGKVA----------EKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMR 372 (514)
Q Consensus 314 ~~~ll~~~~~~~~~~~a~~~~----------~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 372 (514)
|..-..-...+|+.++-+... ++...-.|+...+|...+...-+.+.+++|.....+..
T Consensus 926 w~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 926 WLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred HHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 666555566677666554443 44444568888899998888888888888888776653
No 135
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.06 E-value=0.00017 Score=70.18 Aligned_cols=127 Identities=14% Similarity=0.124 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 040365 178 FIASSLLDMYAKCGNIRLARCIFDKMDLHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAG 257 (514)
Q Consensus 178 ~~~~~li~~y~k~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 257 (514)
....+|+..+...++++.|..+|+++.+.+...+..++..+...++..+|++++++..... +-|...+..-...|.+.+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 3445566677778899999999999987777677778888888888899999999888642 224455555556688889
Q ss_pred CHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 040365 258 LIDKAWSYFNSMTKDYGIAP-SFEHYAAVADLLGRAGKLQEAYEFISNMHAG 308 (514)
Q Consensus 258 ~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 308 (514)
+.+.|..+.+++. ...| +..+|..|..+|...|++++|+..++.+|..
T Consensus 249 ~~~lAL~iAk~av---~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 249 KYELALEIAKKAV---ELSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred CHHHHHHHHHHHH---HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 9999999999886 4467 5678999999999999999999999988744
No 136
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.05 E-value=0.00086 Score=68.60 Aligned_cols=240 Identities=15% Similarity=0.131 Sum_probs=138.2
Q ss_pred CchhHHHHHHH--HHHHCCCHHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHC-C--------CCCCH
Q 040365 74 ANVCIGSSLIN--MYAKCARVEDSHRLFCLLPVKDAISWNSIIAGCVQNGLFDEGLKFFRQMLIA-K--------IKPRH 142 (514)
Q Consensus 74 ~~~~~~~~li~--~~~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g--------~~p~~ 142 (514)
-|..+--++++ .|..-|++|.|.+-.+.+. +...|..|.+.+.+..+.+-|.-.+-.|... | -.|+
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~- 800 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE- 800 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-
Confidence 35555555553 4566677777776666554 3456777777777777776666555554321 0 1122
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCCC-ChhHHHHHHHHHHhC
Q 040365 143 VSFSSIMPACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMDLH-DIVSWTAVIMGNALH 221 (514)
Q Consensus 143 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~-d~~~~~~li~~~~~~ 221 (514)
.+=.-+.-....+|.+++|+.++.+..+.. .|=..|-..|.+++|.++-+.=..- =..||.....-+-..
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEAR 871 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhh
Confidence 111122222346777888888887766543 3345566677888877765432211 113455555555556
Q ss_pred CChHHHHHHHHHH----------HHcC---------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHH
Q 040365 222 GNAHDAISLFEQM----------EKDG---------VKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHY 282 (514)
Q Consensus 222 g~~~~A~~l~~~m----------~~~g---------~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~ 282 (514)
++.+.|++.|++- .... -+.|..-|..-....-..|+.+.|+.++... ++ |
T Consensus 872 ~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A-~D---------~ 941 (1416)
T KOG3617|consen 872 RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA-KD---------Y 941 (1416)
T ss_pred ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh-hh---------h
Confidence 6777777666542 2211 1123344444555556678888888888766 32 4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040365 283 AAVADLLGRAGKLQEAYEFISNMHAGPTENVWLTLLSACRVHKNVELAGKVAEKIF 338 (514)
Q Consensus 283 ~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 338 (514)
-+++...+-.|+.++|-++-++-. |......|..-|...|++.+|..+|-++.
T Consensus 942 fs~VrI~C~qGk~~kAa~iA~esg---d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 942 FSMVRIKCIQGKTDKAARIAEESG---DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hhheeeEeeccCchHHHHHHHhcc---cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 566666666777777776666543 45555556666777777777766665543
No 137
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.04 E-value=5.6e-06 Score=48.86 Aligned_cols=31 Identities=32% Similarity=0.659 Sum_probs=28.2
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHhhCCC
Q 040365 7 VSWNTVIVGLARNGLYEEALNIVRQMGNVNL 37 (514)
Q Consensus 7 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 37 (514)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 5899999999999999999999999998774
No 138
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.03 E-value=0.0057 Score=54.77 Aligned_cols=134 Identities=11% Similarity=0.036 Sum_probs=67.2
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH
Q 040365 165 HGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMDLHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSV 244 (514)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 244 (514)
.+.+.......+......-...|.+.|++++|.+.......-+.... =+..+.+..+.+-|...+++|.+- -+..
T Consensus 96 ~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al--~VqI~lk~~r~d~A~~~lk~mq~i---ded~ 170 (299)
T KOG3081|consen 96 YELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAAL--NVQILLKMHRFDLAEKELKKMQQI---DEDA 170 (299)
T ss_pred HHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHH--HHHHHHHHHHHHHHHHHHHHHHcc---chHH
Confidence 33343333333333333334456667777777776666332222222 233344555666677777777652 2445
Q ss_pred HHHHHHHHHHc----cCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 040365 245 AFVAVLTACSH----AGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISNM 305 (514)
Q Consensus 245 t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 305 (514)
|.+.|..++.+ .+.+..|.-+|++|.. ...|++.+.+...-+....|++++|..++++.
T Consensus 171 tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~ea 233 (299)
T KOG3081|consen 171 TLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEA 233 (299)
T ss_pred HHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHH
Confidence 55555555432 3345556666665532 23445544444444445555555555555544
No 139
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.98 E-value=0.017 Score=55.07 Aligned_cols=104 Identities=14% Similarity=0.183 Sum_probs=61.3
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 040365 184 LDMYAKCGNIRLARCIFDKMDLHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAW 263 (514)
Q Consensus 184 i~~y~k~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 263 (514)
|.-+...|+...|.++-.+..-||..-|...+.+|+..++|++-..+... +-.++-|..++.+|...|...+|.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA~ 257 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEAS 257 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHHH
Confidence 34445566666676666666666666677777777777776655544321 112355666666666666666666
Q ss_pred HHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHh
Q 040365 264 SYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISN 304 (514)
Q Consensus 264 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 304 (514)
.+...+ .+..-+.+|.++|++.+|.+.--+
T Consensus 258 ~yI~k~-----------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 258 KYIPKI-----------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHhC-----------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 665542 113445666666666666555433
No 140
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.89 E-value=1.6e-05 Score=46.85 Aligned_cols=31 Identities=26% Similarity=0.638 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 040365 209 VSWTAVIMGNALHGNAHDAISLFEQMEKDGV 239 (514)
Q Consensus 209 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 239 (514)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4688888888888888888888888887664
No 141
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.87 E-value=0.051 Score=56.82 Aligned_cols=68 Identities=18% Similarity=0.171 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhcCCH---HHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHhCCCccCC
Q 040365 313 VWLTLLSACRVHKNV---ELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRNKGMKKTP 380 (514)
Q Consensus 313 ~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 380 (514)
+-+.|+..|++.++. -+|+-+++......|.|..+-..|+.+|.-.|-...|.++++.|.-+.|..+.
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DT 508 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDT 508 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhcc
Confidence 346778889888875 45677777777888999999999999999999999999999999777766554
No 142
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.85 E-value=0.0034 Score=56.17 Aligned_cols=244 Identities=11% Similarity=0.002 Sum_probs=143.0
Q ss_pred HHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCH
Q 040365 114 IAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNI 193 (514)
Q Consensus 114 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~ 193 (514)
|+-+.-.|.+..++..-...... +-+..+-.-+-++|...|...... ..+.... .|.......+......-++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~---~eI~~~~-~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVI---SEIKEGK-ATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHcccccccc---ccccccc-CChHHHHHHHHHHhhCcchh
Confidence 34445567777776654443322 233344444556666666543221 1222222 23333322222222223333
Q ss_pred HHH-HHHHHhCCCCCh---hHHH-HHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 040365 194 RLA-RCIFDKMDLHDI---VSWT-AVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNS 268 (514)
Q Consensus 194 ~~A-~~~~~~m~~~d~---~~~~-~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 268 (514)
++- .++.+.+..+.. .+|. .-...|...|++++|++..+... +......=+....+..+++-|.+.++.
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 233344432221 1222 22345778899999998887621 222222223345567788889998888
Q ss_pred hHHhcCCCCCHhHHHHHHHHH----HhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 040365 269 MTKDYGIAPSFEHYAAVADLL----GRAGKLQEAYEFISNMHA--GPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDP 342 (514)
Q Consensus 269 m~~~~~~~p~~~~~~~li~~~----~~~g~~~~A~~~~~~m~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 342 (514)
|.. + .+-.+.+-|..++ .-.+.+.+|.-+|++|.. .|+..+.+-...++...|++++|+.+++.++..++
T Consensus 163 mq~---i-ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 163 MQQ---I-DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred HHc---c-chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 853 2 2334455454444 445678899999999864 48888888888899999999999999999999999
Q ss_pred CCcchHHHHHHHHHHccChhHH-HHHHHHHHh
Q 040365 343 NNMGAYVILSNTYAAARRWKDA-ASLRVFMRN 373 (514)
Q Consensus 343 ~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m~~ 373 (514)
.++.+...++-.-...|.-.++ .+...+++.
T Consensus 239 ~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 239 KDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 8888888888877777776544 344555543
No 143
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.85 E-value=0.00053 Score=56.76 Aligned_cols=87 Identities=8% Similarity=-0.101 Sum_probs=38.3
Q ss_pred HHHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChH
Q 040365 149 MPACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMD---LHDIVSWTAVIMGNALHGNAH 225 (514)
Q Consensus 149 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~ 225 (514)
...+...|++++|.+.+..+...+ +.+...+..+...|.+.|++++|...|+... ..+...|..+...|...|+++
T Consensus 24 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~ 102 (135)
T TIGR02552 24 AYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPE 102 (135)
T ss_pred HHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHH
Confidence 333444444444444444444432 2334444444444444444444444444332 223333444444444444555
Q ss_pred HHHHHHHHHHH
Q 040365 226 DAISLFEQMEK 236 (514)
Q Consensus 226 ~A~~l~~~m~~ 236 (514)
+|+..|++..+
T Consensus 103 ~A~~~~~~al~ 113 (135)
T TIGR02552 103 SALKALDLAIE 113 (135)
T ss_pred HHHHHHHHHHH
Confidence 55554444444
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.83 E-value=0.00084 Score=56.41 Aligned_cols=114 Identities=20% Similarity=0.124 Sum_probs=55.6
Q ss_pred cCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCH----HHHHHHHHHHHhcCCHHH
Q 040365 256 AGLIDKAWSYFNSMTKDYGIAP-SFEHYAAVADLLGRAGKLQEAYEFISNMHAG-PTE----NVWLTLLSACRVHKNVEL 329 (514)
Q Consensus 256 ~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p~~----~~~~~ll~~~~~~~~~~~ 329 (514)
.++...+...++.+.++++-.| .....-.+...+...|++++|...|+..... ||. .....|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4555555555555544422221 1222223344455556666665555554311 222 123334455556666666
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHH
Q 040365 330 AGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVF 370 (514)
Q Consensus 330 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 370 (514)
|+..++.. ...+..+..+..++++|.+.|++++|...|+.
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66655442 11222344555666666666666666666653
No 145
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.82 E-value=0.00026 Score=53.79 Aligned_cols=92 Identities=22% Similarity=0.260 Sum_probs=72.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcc
Q 040365 282 YAAVADLLGRAGKLQEAYEFISNMH-AGP-TENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAAR 359 (514)
Q Consensus 282 ~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 359 (514)
+..+...+...|++++|.+.+++.. ..| +...+..+...+...++++.|...+++.....|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 4456666777888888888887753 223 44667777888888888999999999988888888888888888999999
Q ss_pred ChhHHHHHHHHHHh
Q 040365 360 RWKDAASLRVFMRN 373 (514)
Q Consensus 360 ~~~~a~~~~~~m~~ 373 (514)
++++|...+....+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 99999888877654
No 146
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.81 E-value=0.002 Score=57.14 Aligned_cols=181 Identities=16% Similarity=0.118 Sum_probs=124.9
Q ss_pred cCCHHHHHHHHHhCC--------CCChh-HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHccCCH
Q 040365 190 CGNIRLARCIFDKMD--------LHDIV-SWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAV-LTACSHAGLI 259 (514)
Q Consensus 190 ~g~~~~A~~~~~~m~--------~~d~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~ 259 (514)
..+.++..+++.++. .++.. .|-.++-+....|+.+.|...++++... + |.+.-...+ ..-+-..|.+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhch
Confidence 356777777777764 22332 3444455566778888888888888775 2 443221111 1123456888
Q ss_pred HHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040365 260 DKAWSYFNSMTKDYGIAP-SFEHYAAVADLLGRAGKLQEAYEFISNMH--AGPTENVWLTLLSACRVHKNVELAGKVAEK 336 (514)
Q Consensus 260 ~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 336 (514)
++|.++++.+..+ .| |..+|-.=+.+.-..|+--+|++-+.+.. +..|...|.-|...|...|+++.|.-.+++
T Consensus 103 ~~A~e~y~~lL~d---dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 103 KEAIEYYESLLED---DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred hhHHHHHHHHhcc---CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 8999999888765 35 56666666666666777667776655542 346888899999999999999999999999
Q ss_pred HHhcCCCCcchHHHHHHHHHHcc---ChhHHHHHHHHHHhCC
Q 040365 337 IFMIDPNNMGAYVILSNTYAAAR---RWKDAASLRVFMRNKG 375 (514)
Q Consensus 337 ~~~~~p~~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~g 375 (514)
++-..|.++..+..++..+.-.| +.+-|++.+.+..+..
T Consensus 180 ~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 180 LLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 98888988888888888876555 4666777777766543
No 147
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.73 E-value=0.00084 Score=53.97 Aligned_cols=100 Identities=15% Similarity=0.089 Sum_probs=50.5
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHH
Q 040365 247 VAVLTACSHAGLIDKAWSYFNSMTKDYGIAP-SFEHYAAVADLLGRAGKLQEAYEFISNMH-AGPT----ENVWLTLLSA 320 (514)
Q Consensus 247 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~----~~~~~~ll~~ 320 (514)
..+...+...|++++|...|..+...+.-.| ....+..+...+.+.|++++|.+.++.+. ..|+ ..++..+..+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 3344444555555555555555543321111 12334445555555555555555555442 1122 3345555556
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCcc
Q 040365 321 CRVHKNVELAGKVAEKIFMIDPNNMG 346 (514)
Q Consensus 321 ~~~~~~~~~a~~~~~~~~~~~p~~~~ 346 (514)
+...|+.+.|...++++++..|++..
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHhCChHHHHHHHHHHHHHCcCChh
Confidence 66666666666666666666665543
No 148
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.72 E-value=0.00013 Score=52.33 Aligned_cols=64 Identities=23% Similarity=0.219 Sum_probs=58.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcc-ChhHHHHHHHHHHh
Q 040365 310 TENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAAR-RWKDAASLRVFMRN 373 (514)
Q Consensus 310 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 373 (514)
++.+|..+...+...|++++|+..|+++++.+|+++..|..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999 79999999987654
No 149
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.69 E-value=7.3e-05 Score=56.18 Aligned_cols=78 Identities=15% Similarity=0.215 Sum_probs=48.1
Q ss_pred cCCHHHHHHHHHhCC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHH
Q 040365 292 AGKLQEAYEFISNMH-AGP---TENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASL 367 (514)
Q Consensus 292 ~g~~~~A~~~~~~m~-~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 367 (514)
.|++++|+.+++++. ..| +...|..+..++.+.|++++|..++++ .+.+|.+......++.+|.+.|++++|.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 355666666666552 112 344555566777777777777777776 555555555666667777777777777777
Q ss_pred HHH
Q 040365 368 RVF 370 (514)
Q Consensus 368 ~~~ 370 (514)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 764
No 150
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.68 E-value=0.011 Score=52.54 Aligned_cols=191 Identities=18% Similarity=0.206 Sum_probs=138.7
Q ss_pred ccCChHHHHHHHHHHHH---cC-CCCcH-HHHHHHHHHHHhcCCHHHHHHHHHhCCCC-----ChhHHHHHHHHHHhCCC
Q 040365 154 HLTTLHLGKQLHGCIIR---NG-FDDNM-FIASSLLDMYAKCGNIRLARCIFDKMDLH-----DIVSWTAVIMGNALHGN 223 (514)
Q Consensus 154 ~~~~~~~a~~~~~~~~~---~~-~~~~~-~~~~~li~~y~k~g~~~~A~~~~~~m~~~-----d~~~~~~li~~~~~~g~ 223 (514)
...+.++..+++..++. .| ..++. .++..++-+...+|+.+.|...++.+..+ -+.-..+| -+-..|+
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam--~lEa~~~ 101 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAM--LLEATGN 101 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHH--HHHHhhc
Confidence 44567888888887764 24 44554 45666777788899999999999887522 22222222 2345799
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 040365 224 AHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFIS 303 (514)
Q Consensus 224 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 303 (514)
+++|+++++.+.+.. +.|.+++.-=+...-..|+--+|++-+....+. +..|.+.|.-+.+.|...|++++|.--++
T Consensus 102 ~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClE 178 (289)
T KOG3060|consen 102 YKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLE 178 (289)
T ss_pred hhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 999999999999875 446677776666666677777888888877663 46689999999999999999999999999
Q ss_pred hCC-CCC-CHHHHHHHHHHHH---hcCCHHHHHHHHHHHHhcCCCCcchHH
Q 040365 304 NMH-AGP-TENVWLTLLSACR---VHKNVELAGKVAEKIFMIDPNNMGAYV 349 (514)
Q Consensus 304 ~m~-~~p-~~~~~~~ll~~~~---~~~~~~~a~~~~~~~~~~~p~~~~~~~ 349 (514)
++. ..| +...+..+...+- ...+.+.+...+.+.+++.|.+...+.
T Consensus 179 E~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 179 ELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALF 229 (289)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHH
Confidence 874 345 5555666666543 344788899999999999986554433
No 151
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.67 E-value=0.0027 Score=53.34 Aligned_cols=123 Identities=11% Similarity=0.118 Sum_probs=79.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChh---hHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCch--hHHHHH
Q 040365 8 SWNTVIVGLARNGLYEEALNIVRQMGNVNLKPDSF---TLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANV--CIGSSL 82 (514)
Q Consensus 8 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~l 82 (514)
.|..++..+. .++...+...++.+.... +.+.+ ..-.+...+...|++++|...++.++.....++. ...-.|
T Consensus 14 ~y~~~~~~~~-~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQALQ-AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHHH-CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 4666666664 677777777777777653 22212 2223445666778888888888888776522221 234446
Q ss_pred HHHHHHCCCHHHHHHHHccCCCC--ChhHHHHHHHHHHHCCChhHHHHHHHH
Q 040365 83 INMYAKCARVEDSHRLFCLLPVK--DAISWNSIIAGCVQNGLFDEGLKFFRQ 132 (514)
Q Consensus 83 i~~~~~~g~~~~A~~~f~~~~~~--d~~~~~~li~~~~~~g~~~~A~~l~~~ 132 (514)
...+...|++++|+..++..+.+ ....+......|.+.|+.++|...|++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 67777788888888888765433 334555667777788888888877765
No 152
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.62 E-value=0.00099 Score=53.55 Aligned_cols=96 Identities=18% Similarity=0.081 Sum_probs=81.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---cchHHHH
Q 040365 280 EHYAAVADLLGRAGKLQEAYEFISNMH-AGPT----ENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNN---MGAYVIL 351 (514)
Q Consensus 280 ~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l 351 (514)
..+..++..+.+.|++++|.+.++.+. ..|+ ...+..+..++...|+++.|...++.+....|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 456677888899999999999998874 2233 3467778899999999999999999999988775 4578889
Q ss_pred HHHHHHccChhHHHHHHHHHHhCC
Q 040365 352 SNTYAAARRWKDAASLRVFMRNKG 375 (514)
Q Consensus 352 ~~~~~~~g~~~~a~~~~~~m~~~g 375 (514)
+.++.+.|++++|.+.++.+.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 999999999999999999998764
No 153
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.60 E-value=0.061 Score=50.09 Aligned_cols=289 Identities=13% Similarity=0.109 Sum_probs=203.9
Q ss_pred HHHHHHHHCCCHHHHHHHHccCCCCChhHHHHHH---HHHHHCCChhHHHHHHHHHHHCCCCCCHHHHH-HHHHHHhccC
Q 040365 81 SLINMYAKCARVEDSHRLFCLLPVKDAISWNSII---AGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFS-SIMPACAHLT 156 (514)
Q Consensus 81 ~li~~~~~~g~~~~A~~~f~~~~~~d~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~ll~~~~~~~ 156 (514)
-|-+.+...|++.+|+.-|....+-|+..|-++. ..|...|+..-|+.=|.+..+ ++||-..-. .-...+.+.|
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhcc
Confidence 3445556678888888888888777777776664 467778888888888887776 467744322 1123456788
Q ss_pred ChHHHHHHHHHHHHcCCCC--cHH------------HHHHHHHHHHhcCCHHHHHHHHHhCC---CCChhHHHHHHHHHH
Q 040365 157 TLHLGKQLHGCIIRNGFDD--NMF------------IASSLLDMYAKCGNIRLARCIFDKMD---LHDIVSWTAVIMGNA 219 (514)
Q Consensus 157 ~~~~a~~~~~~~~~~~~~~--~~~------------~~~~li~~y~k~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~ 219 (514)
.++.|..=|+.+++..... ... .....+..+...|+...|+.....+. .-|+..+..-..+|.
T Consensus 121 ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i 200 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYI 200 (504)
T ss_pred cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHH
Confidence 8888888888888764211 111 11223345667889999988888775 447788888889999
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHh----HHHHH---H------
Q 040365 220 LHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFE----HYAAV---A------ 286 (514)
Q Consensus 220 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~----~~~~l---i------ 286 (514)
..|++..|+.=++...+.. .-|..++--+-..+...|+.+.++...++-. .+.|+-. +|-.| +
T Consensus 201 ~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL---KldpdHK~Cf~~YKklkKv~K~les~ 276 (504)
T KOG0624|consen 201 AEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL---KLDPDHKLCFPFYKKLKKVVKSLESA 276 (504)
T ss_pred hcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH---ccCcchhhHHHHHHHHHHHHHHHHHH
Confidence 9999999988777665532 2244566666677788899988888777664 4566532 22221 1
Q ss_pred HHHHhcCCHHHHHHHHHh-CCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccC
Q 040365 287 DLLGRAGKLQEAYEFISN-MHAGPTE-----NVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARR 360 (514)
Q Consensus 287 ~~~~~~g~~~~A~~~~~~-m~~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 360 (514)
....+.+++.++.+-.+. |...|.. ..+..+-.+++..+++.+|++...++++.+|+|..++.--+.+|.-...
T Consensus 277 e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~ 356 (504)
T KOG0624|consen 277 EQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEM 356 (504)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHH
Confidence 123455677777666654 3444542 2344555677889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhCC
Q 040365 361 WKDAASLRVFMRNKG 375 (514)
Q Consensus 361 ~~~a~~~~~~m~~~g 375 (514)
|++|..-|+...+-+
T Consensus 357 YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 357 YDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999887654
No 154
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.53 E-value=0.00034 Score=49.51 Aligned_cols=58 Identities=19% Similarity=0.155 Sum_probs=43.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHhC
Q 040365 317 LLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRNK 374 (514)
Q Consensus 317 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 374 (514)
+...+...|++++|+..++++++..|.++..+..++.++...|++++|...+++..+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3456677788888888888888888888888888888888888888888888777543
No 155
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.53 E-value=0.013 Score=58.75 Aligned_cols=233 Identities=14% Similarity=0.139 Sum_probs=131.2
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC-----------ChhhHHHHHHHHhCCCChHHHH--HHHHHHHHhCCC
Q 040365 7 VSWNTVIVGLARNGLYEEALNIVRQMGNVNLKP-----------DSFTLSSVLPIFADYVDVIKGK--EIHGYAIRHGLD 73 (514)
Q Consensus 7 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-----------~~~t~~~ll~~~~~~~~~~~a~--~~~~~~~~~g~~ 73 (514)
+.+.+=+--|...|.+++|..+-- .|+.- +.-.++..=++|.+..+..--+ .-++++.+.|-.
T Consensus 557 vp~~~~m~q~Ieag~f~ea~~iac----lgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~ 632 (1081)
T KOG1538|consen 557 VPQSAPMYQYIERGLFKEAYQIAC----LGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGET 632 (1081)
T ss_pred ccccccchhhhhccchhhhhcccc----cceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCC
Confidence 344444556777787777765421 11111 1222344445555555544322 223455566655
Q ss_pred CchhHHHHHHHHHHHCCCHHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 040365 74 ANVCIGSSLINMYAKCARVEDSHRLFCLLPVKDAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACA 153 (514)
Q Consensus 74 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 153 (514)
|+... +...++-.|.+.+|-++|. ++|....|+++|..|+--. ...-+.
T Consensus 633 P~~iL---lA~~~Ay~gKF~EAAklFk------------------~~G~enRAlEmyTDlRMFD----------~aQE~~ 681 (1081)
T KOG1538|consen 633 PNDLL---LADVFAYQGKFHEAAKLFK------------------RSGHENRALEMYTDLRMFD----------YAQEFL 681 (1081)
T ss_pred chHHH---HHHHHHhhhhHHHHHHHHH------------------HcCchhhHHHHHHHHHHHH----------HHHHHh
Confidence 66543 4455666788888888875 4566667777776664311 122333
Q ss_pred ccCChHHHHHHHHHHHHc--C-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHH
Q 040365 154 HLTTLHLGKQLHGCIIRN--G-FDDNMFIASSLLDMYAKCGNIRLARCIFDKMDLHDIVSWTAVIMGNALHGNAHDAISL 230 (514)
Q Consensus 154 ~~~~~~~a~~~~~~~~~~--~-~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l 230 (514)
..|+.++-+.+..+-.+- . -+|. +-..++...|+.++|..+ .+.+|..+-++++
T Consensus 682 ~~g~~~eKKmL~RKRA~WAr~~kePk-----aAAEmLiSaGe~~KAi~i------------------~~d~gW~d~lidI 738 (1081)
T KOG1538|consen 682 GSGDPKEKKMLIRKRADWARNIKEPK-----AAAEMLISAGEHVKAIEI------------------CGDHGWVDMLIDI 738 (1081)
T ss_pred hcCChHHHHHHHHHHHHHhhhcCCcH-----HHHHHhhcccchhhhhhh------------------hhcccHHHHHHHH
Confidence 444444444333322111 0 1222 234566677888877654 3456666666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC
Q 040365 231 FEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISNMHA-GP 309 (514)
Q Consensus 231 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~p 309 (514)
-+++-. .+..+...+..-+-+...+..|-++|..|-. ...++++....+++++|..+-++.|. .|
T Consensus 739 ~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~ 804 (1081)
T KOG1538|consen 739 ARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKD 804 (1081)
T ss_pred Hhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccc
Confidence 665533 2445555566666667777888888887732 24577888888999999998888873 34
Q ss_pred CH
Q 040365 310 TE 311 (514)
Q Consensus 310 ~~ 311 (514)
|+
T Consensus 805 dV 806 (1081)
T KOG1538|consen 805 DV 806 (1081)
T ss_pred cc
Confidence 54
No 156
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.51 E-value=0.12 Score=51.17 Aligned_cols=159 Identities=12% Similarity=0.136 Sum_probs=99.2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHH
Q 040365 210 SWTAVIMGNALHGNAHDAISLFEQMEKDGVKP-NSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADL 288 (514)
Q Consensus 210 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 288 (514)
+|-..+..-.+..-...|..+|.+..+.+..+ +.....+++.-++ .++.+.|.++|+.=.+.+|-. +.--...++-
T Consensus 368 v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~--p~yv~~Yldf 444 (656)
T KOG1914|consen 368 VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDS--PEYVLKYLDF 444 (656)
T ss_pred ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCC--hHHHHHHHHH
Confidence 45556666566666777888888888777766 4455555555443 467778888887666654433 3344566777
Q ss_pred HHhcCCHHHHHHHHHhCCCC---C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----cchHHHHHHHHHHcc
Q 040365 289 LGRAGKLQEAYEFISNMHAG---P--TENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNN----MGAYVILSNTYAAAR 359 (514)
Q Consensus 289 ~~~~g~~~~A~~~~~~m~~~---p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g 359 (514)
+...++-..|..+|++.... | ...+|..+|.--..-|+...+..+-++....-|.+ ...-..++..|.-.+
T Consensus 445 L~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d 524 (656)
T KOG1914|consen 445 LSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILD 524 (656)
T ss_pred HHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcc
Confidence 77778777888888776322 2 34678888887788888888877777766554411 112334555565555
Q ss_pred ChhHHHHHHHHH
Q 040365 360 RWKDAASLRVFM 371 (514)
Q Consensus 360 ~~~~a~~~~~~m 371 (514)
.+..-..-++.|
T Consensus 525 ~~~c~~~elk~l 536 (656)
T KOG1914|consen 525 LYPCSLDELKFL 536 (656)
T ss_pred cccccHHHHHhh
Confidence 554444444333
No 157
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.50 E-value=0.00091 Score=65.31 Aligned_cols=105 Identities=16% Similarity=0.129 Sum_probs=86.3
Q ss_pred HHHHHHccCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcC
Q 040365 249 VLTACSHAGLIDKAWSYFNSMTKDYGIAP-SFEHYAAVADLLGRAGKLQEAYEFISNMH-AGP-TENVWLTLLSACRVHK 325 (514)
Q Consensus 249 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~ 325 (514)
-...+...|++++|+..|+.+.+ ..| +...|..+..+|.+.|++++|+..++++. ..| +...|..+..+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 35566778999999999999875 355 57788888899999999999999998863 334 6778888999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 040365 326 NVELAGKVAEKIFMIDPNNMGAYVILSNTYA 356 (514)
Q Consensus 326 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 356 (514)
++++|+..++++++++|+++.....+..+..
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~ 115 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDE 115 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 9999999999999999998877666655433
No 158
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.46 E-value=0.0053 Score=53.25 Aligned_cols=130 Identities=18% Similarity=0.220 Sum_probs=83.3
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CHhHHH
Q 040365 207 DIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPN--SVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAP-SFEHYA 283 (514)
Q Consensus 207 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~ 283 (514)
....+..+...+...|++++|+..|++.......|+ ...+..+...+.+.|++++|...+..... ..| +...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHH
Confidence 344566677777778888888888888776433332 34666777777788888888888877754 234 455555
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccC
Q 040365 284 AVADLLGRAGKLQEAYEFISNMHAGPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARR 360 (514)
Q Consensus 284 ~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 360 (514)
.+...+...|+...+..-++... ..++.|.++++++...+|++ |..+...+...|+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A~------------------~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEAE------------------ALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHHH------------------HHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 66666666666655543322211 12677888888888888875 5555555555443
No 159
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.46 E-value=0.0025 Score=62.22 Aligned_cols=100 Identities=14% Similarity=0.108 Sum_probs=79.0
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHhcC
Q 040365 215 IMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAP-SFEHYAAVADLLGRAG 293 (514)
Q Consensus 215 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g 293 (514)
...+...|++++|+++|++.++.. +-+...|..+..++.+.|++++|+..++.+.. +.| +...|..+..+|...|
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHhC
Confidence 455677899999999999999853 22456788888899999999999999998864 456 6778888999999999
Q ss_pred CHHHHHHHHHhCC-CCCCHHHHHHHH
Q 040365 294 KLQEAYEFISNMH-AGPTENVWLTLL 318 (514)
Q Consensus 294 ~~~~A~~~~~~m~-~~p~~~~~~~ll 318 (514)
++++|...|++.. ..|+......++
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 9999999998863 445544433333
No 160
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.40 E-value=0.0069 Score=57.00 Aligned_cols=133 Identities=14% Similarity=0.202 Sum_probs=97.9
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHH
Q 040365 209 VSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTA-CSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVAD 287 (514)
Q Consensus 209 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 287 (514)
.+|-.++...-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+.+ ..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 357777877777778888888898887542 2233444444333 334577777999999998764 346677888999
Q ss_pred HHHhcCCHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 040365 288 LLGRAGKLQEAYEFISNMHAG-PT----ENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNN 344 (514)
Q Consensus 288 ~~~~~g~~~~A~~~~~~m~~~-p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 344 (514)
.+.+.|+.+.|..+|++.... |. ..+|...+.--.+.|+.+....+.+++.+.-|.+
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 999999999999999986422 33 3589999999999999999999999999887764
No 161
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.39 E-value=0.0017 Score=56.56 Aligned_cols=98 Identities=15% Similarity=0.268 Sum_probs=77.1
Q ss_pred HHHHHhC--CCCChhHHHHHHHHHHh-----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc-------------
Q 040365 197 RCIFDKM--DLHDIVSWTAVIMGNAL-----HGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHA------------- 256 (514)
Q Consensus 197 ~~~~~~m--~~~d~~~~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~------------- 256 (514)
...|+.. ..+|..+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.||..+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 4556655 46677788888887765 467778888889999999999999999999876542
Q ss_pred ---CCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCH
Q 040365 257 ---GLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKL 295 (514)
Q Consensus 257 ---g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 295 (514)
.+-+-|++++++| +++|+-||.+++..|++.+++.+..
T Consensus 114 hyp~Qq~c~i~lL~qM-E~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQM-ENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred cCcHHHHHHHHHHHHH-HHcCCCCcHHHHHHHHHHhccccHH
Confidence 2356789999999 6679999999999999999877653
No 162
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.39 E-value=0.0025 Score=49.29 Aligned_cols=79 Identities=13% Similarity=0.020 Sum_probs=67.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhCCC-CCChhhHHHHHHHHhCCC--------ChHHHHHHHHHHHHhCCCCchhHHH
Q 040365 10 NTVIVGLARNGLYEEALNIVRQMGNVNL-KPDSFTLSSVLPIFADYV--------DVIKGKEIHGYAIRHGLDANVCIGS 80 (514)
Q Consensus 10 ~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~~ 80 (514)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+++.|+..++.|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4556677777999999999999999999 999999999999987653 2446778999999999999999999
Q ss_pred HHHHHHHH
Q 040365 81 SLINMYAK 88 (514)
Q Consensus 81 ~li~~~~~ 88 (514)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99987754
No 163
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.36 E-value=0.029 Score=55.36 Aligned_cols=125 Identities=14% Similarity=0.113 Sum_probs=59.4
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHhCCC--CC-hhHHHHHHHHHH
Q 040365 144 SFSSIMPACAHLTTLHLGKQLHGCIIRNGFDD-NMFIASSLLDMYAKCGNIRLARCIFDKMDL--HD-IVSWTAVIMGNA 219 (514)
Q Consensus 144 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~y~k~g~~~~A~~~~~~m~~--~d-~~~~~~li~~~~ 219 (514)
+|...++.--+..-+..|+.+|.++.+.+..+ ++.++++++.-|+ .++..-|.++|+--.+ +| ..--+..+.-+.
T Consensus 368 v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~ 446 (656)
T KOG1914|consen 368 VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLS 446 (656)
T ss_pred ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 34444555555555555555555555554444 5555555555444 3445555555543321 12 222233344444
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCCHHHHHHHHHHh
Q 040365 220 LHGNAHDAISLFEQMEKDGVKPNS--VAFVAVLTACSHAGLIDKAWSYFNSM 269 (514)
Q Consensus 220 ~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m 269 (514)
..++-..|..+|++....++.||. ..|..+|.--+.-|++..+.++-+++
T Consensus 447 ~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 447 HLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRR 498 (656)
T ss_pred HhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 445555555555555544444332 34445555445555555544444444
No 164
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.34 E-value=0.0033 Score=54.50 Aligned_cols=82 Identities=11% Similarity=0.017 Sum_probs=57.9
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC---C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 040365 279 FEHYAAVADLLGRAGKLQEAYEFISNMH-AGP---T-ENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSN 353 (514)
Q Consensus 279 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p---~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 353 (514)
...+..+...+...|++++|...|++.. ..| + ...|..+...+...|+++.|...++++++..|.+...+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 3445556666666677777777666542 112 1 3567777788888888888888888888888888888888888
Q ss_pred HHHHccC
Q 040365 354 TYAAARR 360 (514)
Q Consensus 354 ~~~~~g~ 360 (514)
+|...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 8877666
No 165
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.34 E-value=0.012 Score=60.30 Aligned_cols=64 Identities=17% Similarity=0.110 Sum_probs=42.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHhC
Q 040365 310 TENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRNK 374 (514)
Q Consensus 310 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 374 (514)
+..+|.++.-.....|++++|...++++++++| +..+|..++..|...|+.++|...+++....
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 445565555555556777777777777777776 4566777777777777777777777665543
No 166
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.33 E-value=0.0031 Score=47.58 Aligned_cols=58 Identities=14% Similarity=0.114 Sum_probs=27.1
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHh
Q 040365 211 WTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSM 269 (514)
Q Consensus 211 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 269 (514)
|..+...+...|++++|...|++..+.. +.+...+..+...+...+++++|.+.|+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 60 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKA 60 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555554431 112233444444444445555555555444
No 167
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.32 E-value=0.00039 Score=49.67 Aligned_cols=53 Identities=19% Similarity=0.257 Sum_probs=42.9
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHhC
Q 040365 322 RVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRNK 374 (514)
Q Consensus 322 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 374 (514)
...|++++|+..++++.+.+|++...+..++.+|.+.|++++|.++++.+...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45688888888888888888888888888888888888888888888866554
No 168
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.31 E-value=0.17 Score=48.34 Aligned_cols=111 Identities=15% Similarity=0.112 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 040365 244 VAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISNMHAGPTENVWLTLLSACRV 323 (514)
Q Consensus 244 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~ 323 (514)
.+.+..+.-|...|....|.++-... .+ |+...|-..+.+|+..|++++-.++... +.++.-|..++.+|..
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLK 249 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHH
Confidence 34556667777888888877775544 54 7888899999999999999998887654 3456789999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHH
Q 040365 324 HKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFM 371 (514)
Q Consensus 324 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 371 (514)
.|+..+|.....++ .+..-+.+|.++|+|.+|.+.--+.
T Consensus 250 ~~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 250 YGNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred CCCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 99999998888772 2356788899999999998875544
No 169
>PRK15331 chaperone protein SicA; Provisional
Probab=97.31 E-value=0.0031 Score=52.72 Aligned_cols=88 Identities=16% Similarity=0.148 Sum_probs=77.0
Q ss_pred HHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhH
Q 040365 286 ADLLGRAGKLQEAYEFISNMH--AGPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKD 363 (514)
Q Consensus 286 i~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 363 (514)
.--+-..|++++|..+|+-+- ..-|..-|..|..+|...++++.|...|.....++++|+.++.....+|...|+.+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence 334557899999999998653 334677789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 040365 364 AASLRVFMRN 373 (514)
Q Consensus 364 a~~~~~~m~~ 373 (514)
|...|+...+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 9999998876
No 170
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.29 E-value=0.0047 Score=51.90 Aligned_cols=69 Identities=23% Similarity=0.288 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHH-----hCCCccCC
Q 040365 312 NVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMR-----NKGMKKTP 380 (514)
Q Consensus 312 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~g~~~~~ 380 (514)
.+...++..+...|+++.|...+++++..+|.+...|..++.+|...|+..+|.++|+.+. +.|+.|++
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 3556677888899999999999999999999999999999999999999999999999885 34887665
No 171
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.28 E-value=0.0041 Score=48.09 Aligned_cols=81 Identities=15% Similarity=0.118 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccC--------ChHHHHHHHHHHHHcCCCCcHHH
Q 040365 109 SWNSIIAGCVQNGLFDEGLKFFRQMLIAKI-KPRHVSFSSIMPACAHLT--------TLHLGKQLHGCIIRNGFDDNMFI 179 (514)
Q Consensus 109 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 179 (514)
|-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-....+++.|+..++.|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 334567777778999999999999999999 899999999999877653 24456778889999999999999
Q ss_pred HHHHHHHHHh
Q 040365 180 ASSLLDMYAK 189 (514)
Q Consensus 180 ~~~li~~y~k 189 (514)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999887765
No 172
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.28 E-value=0.0035 Score=54.11 Aligned_cols=93 Identities=9% Similarity=-0.148 Sum_probs=72.4
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 040365 279 FEHYAAVADLLGRAGKLQEAYEFISNMH-AGPT----ENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSN 353 (514)
Q Consensus 279 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 353 (514)
...|..+...+...|++++|...|++.. ..|+ ..+|..+...+...|++++|+..+++++...|....++..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 4556666777778888888888887752 2222 3578888899999999999999999999999988888888888
Q ss_pred HHH-------HccChhHHHHHHHHH
Q 040365 354 TYA-------AARRWKDAASLRVFM 371 (514)
Q Consensus 354 ~~~-------~~g~~~~a~~~~~~m 371 (514)
+|. ..|++++|...+++-
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 778888776666544
No 173
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.27 E-value=0.0054 Score=57.74 Aligned_cols=139 Identities=11% Similarity=0.110 Sum_probs=101.2
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHH-HhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 040365 7 VSWNTVIVGLARNGLYEEALNIVRQMGNVNLKPDSFTLSSVLPI-FADYVDVIKGKEIHGYAIRHGLDANVCIGSSLINM 85 (514)
Q Consensus 7 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 85 (514)
.+|-.++...-+.+..+.|..+|.+.++.+ .-+...|...... +...++.+.|..+|+..++. ++.+...|..-++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 578899999999999999999999998643 2233334333333 33356777799999999887 57788889999999
Q ss_pred HHHCCCHHHHHHHHccCCCC------ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040365 86 YAKCARVEDSHRLFCLLPVK------DAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIM 149 (514)
Q Consensus 86 ~~~~g~~~~A~~~f~~~~~~------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 149 (514)
+.+.|+.+.|+.+|++.... -...|...+.-=.+.|+.+.+.++.+++.+. -|+..++..++
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~ 147 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFS 147 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHH
Confidence 99999999999999987632 3357999999888999999999999888774 44544444443
No 174
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.27 E-value=0.011 Score=51.63 Aligned_cols=105 Identities=20% Similarity=0.271 Sum_probs=76.0
Q ss_pred CCCHHHHHHHHHHHhc-----cCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCChhHHHH
Q 040365 139 KPRHVSFSSIMPACAH-----LTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMDLHDIVSWTA 213 (514)
Q Consensus 139 ~p~~~t~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~d~~~~~~ 213 (514)
..|..+|..++..+.+ .|..+-....+..|.+.|+..|..+|+.|++.+=| |.+- -..+|+.+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~---------- 111 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE---------- 111 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH----------
Confidence 4566777777777653 46677777888888999999999999999988765 3321 11111111
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 040365 214 VIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGL 258 (514)
Q Consensus 214 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 258 (514)
..- ...+-+-|++++++|...|+.||..|+..+++.+.+.+.
T Consensus 112 -F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 112 -FMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred -hcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 111 134567899999999999999999999999999977654
No 175
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.26 E-value=0.0011 Score=49.78 Aligned_cols=80 Identities=21% Similarity=0.310 Sum_probs=46.1
Q ss_pred CCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHhcCCHHHH
Q 040365 221 HGNAHDAISLFEQMEKDGV-KPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAP-SFEHYAAVADLLGRAGKLQEA 298 (514)
Q Consensus 221 ~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A 298 (514)
.|+++.|+.+|+++.+... .|+...+..+..++.+.|++++|..+++.. ...| +....-.+..++.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~----~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKL----KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCH----THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHh----CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 4677777777777776432 123444444667777777777777777652 2222 223333446666777777777
Q ss_pred HHHHHh
Q 040365 299 YEFISN 304 (514)
Q Consensus 299 ~~~~~~ 304 (514)
.+.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 776654
No 176
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.25 E-value=0.0029 Score=57.69 Aligned_cols=96 Identities=17% Similarity=0.122 Sum_probs=66.9
Q ss_pred HHccCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHH
Q 040365 253 CSHAGLIDKAWSYFNSMTKDYGIAP-SFEHYAAVADLLGRAGKLQEAYEFISNMH-AGPT-ENVWLTLLSACRVHKNVEL 329 (514)
Q Consensus 253 ~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~ 329 (514)
..+.+++++|+..|...+ .+.| |..-|..=..+|.+.|.++.|++=.+... ..|. ..+|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 445677777777777665 4566 45555556777777787777776665542 3343 4678888888888888888
Q ss_pred HHHHHHHHHhcCCCCcchHHHH
Q 040365 330 AGKVAEKIFMIDPNNMGAYVIL 351 (514)
Q Consensus 330 a~~~~~~~~~~~p~~~~~~~~l 351 (514)
|++.|++.++++|++......|
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNL 189 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHH
Confidence 8888888888888887444344
No 177
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.22 E-value=0.0013 Score=47.79 Aligned_cols=58 Identities=14% Similarity=0.097 Sum_probs=49.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHhCC
Q 040365 318 LSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRNKG 375 (514)
Q Consensus 318 l~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 375 (514)
-..+.+.++++.|..++++++.++|+++..+...+.+|.+.|++++|.+.++...+.+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 3567788899999999999999999999999999999999999999999998887554
No 178
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.0067 Score=55.66 Aligned_cols=103 Identities=17% Similarity=0.186 Sum_probs=86.3
Q ss_pred CC-CHhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCcchHH
Q 040365 276 AP-SFEHYAAVADLLGRAGKLQEAYEFISNMH--AGPTENVWLTLLSACRV---HKNVELAGKVAEKIFMIDPNNMGAYV 349 (514)
Q Consensus 276 ~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~p~~~~~~~ 349 (514)
.| |.+.|-.|...|.+.|+++.|..-|.+.. ..++...+..+..++.. .....++..++++++.++|.|..+..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 45 78999999999999999999999998763 23566677666666533 34568899999999999999999999
Q ss_pred HHHHHHHHccChhHHHHHHHHHHhCCCcc
Q 040365 350 ILSNTYAAARRWKDAASLRVFMRNKGMKK 378 (514)
Q Consensus 350 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 378 (514)
.|...+...|++.+|...++.|.+..-.-
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999875443
No 179
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.017 Score=55.09 Aligned_cols=159 Identities=15% Similarity=0.066 Sum_probs=112.0
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHH---HH-------
Q 040365 216 MGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYA---AV------- 285 (514)
Q Consensus 216 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~---~l------- 285 (514)
.++...|++++|...-....+.. ..+......--.++...++.+.|...|++.+ .+.|+-..-. .+
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~~ 252 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLEVK 252 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHHHH
Confidence 34666788888887766665532 1122222112223445678888988888764 3445422111 11
Q ss_pred ---HHHHHhcCCHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 040365 286 ---ADLLGRAGKLQEAYEFISNMH------AGPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYA 356 (514)
Q Consensus 286 ---i~~~~~~g~~~~A~~~~~~m~------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 356 (514)
.....+.|++.+|.+.+.+.. .+|++..|.....+..+.|+..+|+.--+++..++|.-...|..-++++.
T Consensus 253 k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l 332 (486)
T KOG0550|consen 253 KERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHL 332 (486)
T ss_pred HhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHH
Confidence 223457899999999998763 33667778888888999999999999999999999887778888889999
Q ss_pred HccChhHHHHHHHHHHhCCCcc
Q 040365 357 AARRWKDAASLRVFMRNKGMKK 378 (514)
Q Consensus 357 ~~g~~~~a~~~~~~m~~~g~~~ 378 (514)
..++|++|.+-++...+..-.+
T Consensus 333 ~le~~e~AV~d~~~a~q~~~s~ 354 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKAMQLEKDC 354 (486)
T ss_pred HHHHHHHHHHHHHHHHhhcccc
Confidence 9999999999999876654333
No 180
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.20 E-value=0.0067 Score=59.64 Aligned_cols=119 Identities=13% Similarity=0.096 Sum_probs=78.8
Q ss_pred CCCchhHHHHHHHHHHHCCCHHHHHHHHccCCC-C-----ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHH
Q 040365 72 LDANVCIGSSLINMYAKCARVEDSHRLFCLLPV-K-----DAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSF 145 (514)
Q Consensus 72 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~-~-----d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 145 (514)
.+.+......+++......+++.+..++-+... | -..|..++|+.|.+.|..++++.+++.=...|+-||.+|+
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 344555555666666666667777776655542 1 1224457778888888888888877777777778888888
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc
Q 040365 146 SSIMPACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKC 190 (514)
Q Consensus 146 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~ 190 (514)
+.++..+.+.|++..|.++...|...+...+..++..-+..+.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888887777777776666555555554444444444
No 181
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.18 E-value=0.0016 Score=46.05 Aligned_cols=61 Identities=21% Similarity=0.260 Sum_probs=47.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 040365 285 VADLLGRAGKLQEAYEFISNMH-AGP-TENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNM 345 (514)
Q Consensus 285 li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 345 (514)
+...+.+.|++++|.+.|++.. ..| +...|..+..++...|++++|...++++++.+|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4456778888888888888864 335 567788888899999999999999999999988764
No 182
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.18 E-value=0.0046 Score=58.60 Aligned_cols=256 Identities=14% Similarity=0.100 Sum_probs=146.8
Q ss_pred HHHHCCChhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhccCChHHHHHHHHHHH--Hc--CCC-CcHHHHHHHHHH
Q 040365 116 GCVQNGLFDEGLKFFRQMLIAKIKPRHV----SFSSIMPACAHLTTLHLGKQLHGCII--RN--GFD-DNMFIASSLLDM 186 (514)
Q Consensus 116 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~--~~--~~~-~~~~~~~~li~~ 186 (514)
-+++.|+....+.+|+...+.|. -|.. .|..+-.+|.-++++++|.++|..=+ .. |-. -.......|.+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 35677777777777777777662 3333 34445556666677777777764321 11 100 000111112223
Q ss_pred HHhcCCHHHHHHHHH-hCC------CC--ChhHHHHHHHHHHhCCC--------------------hHHHHHHHHHHH--
Q 040365 187 YAKCGNIRLARCIFD-KMD------LH--DIVSWTAVIMGNALHGN--------------------AHDAISLFEQME-- 235 (514)
Q Consensus 187 y~k~g~~~~A~~~~~-~m~------~~--d~~~~~~li~~~~~~g~--------------------~~~A~~l~~~m~-- 235 (514)
+--.|.+++|.-.-. .+. .+ ....+..+...|...|+ ++.|.++|.+=.
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 333455555433221 111 00 11233334444433321 233444443321
Q ss_pred --HcCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHH---hHHhcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhC---
Q 040365 236 --KDGVK-PNSVAFVAVLTACSHAGLIDKAWSYFNS---MTKDYGIAP-SFEHYAAVADLLGRAGKLQEAYEFISNM--- 305 (514)
Q Consensus 236 --~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~---m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m--- 305 (514)
..|-. .-...|..|.+.|.-.|+++.|+..++. +.+++|-.. ....+..|..++.-.|+++.|.+.++..
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 11111 1123455666666777899999887763 223444433 3456777888888899999999888753
Q ss_pred ----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----C--CCCcchHHHHHHHHHHccChhHHHHHHHHHH
Q 040365 306 ----HA-GPTENVWLTLLSACRVHKNVELAGKVAEKIFMI----D--PNNMGAYVILSNTYAAARRWKDAASLRVFMR 372 (514)
Q Consensus 306 ----~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 372 (514)
.. .....+..+|..+|....+++.|+..+.+-+.+ + .....++.+|.++|...|..+.|+...+.-.
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 11 134556778899999999999999888776543 2 3346789999999999999999988776554
No 183
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.15 E-value=0.0044 Score=60.87 Aligned_cols=118 Identities=10% Similarity=0.061 Sum_probs=66.2
Q ss_pred CCChhhHHHHHHHHhCCCChHHHHHHHHHHHHh--CCCCchhHHHHHHHHHHHCCCHHHHHHHHccCC----CCChhHHH
Q 040365 38 KPDSFTLSSVLPIFADYVDVIKGKEIHGYAIRH--GLDANVCIGSSLINMYAKCARVEDSHRLFCLLP----VKDAISWN 111 (514)
Q Consensus 38 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~----~~d~~~~~ 111 (514)
+.+...+..++..+....+++.++.++-..... ....-..+..++|+.|.+.|..+.+..++..=. -||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 444555555666666555666665555554443 122223344566666666666666666665432 25666666
Q ss_pred HHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 040365 112 SIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHL 155 (514)
Q Consensus 112 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 155 (514)
.||+.+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 66666666666666666666665555555556665555555443
No 184
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.12 E-value=0.019 Score=47.90 Aligned_cols=95 Identities=11% Similarity=0.050 Sum_probs=51.1
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 040365 106 DAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRH-VSFSSIMPACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLL 184 (514)
Q Consensus 106 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 184 (514)
+....-.+..-+.+.|++++|..+|+-+... .|.. .-|-.+..+|-..|++++|...+....... +.|...+-.+.
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag 110 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHH
Confidence 3334444445555666666666666665553 2322 233344444555566666666666665554 34444455555
Q ss_pred HHHHhcCCHHHHHHHHHhC
Q 040365 185 DMYAKCGNIRLARCIFDKM 203 (514)
Q Consensus 185 ~~y~k~g~~~~A~~~~~~m 203 (514)
.+|.+.|+.+.|++.|+..
T Consensus 111 ~c~L~lG~~~~A~~aF~~A 129 (157)
T PRK15363 111 ECYLACDNVCYAIKALKAV 129 (157)
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 5666666666666655543
No 185
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.11 E-value=0.012 Score=49.87 Aligned_cols=100 Identities=20% Similarity=0.237 Sum_probs=51.9
Q ss_pred CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CcchH
Q 040365 274 GIAPSFEHYAAVADLLGRAGKLQEAYEFISNMH---AGPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPN--NMGAY 348 (514)
Q Consensus 274 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~ 348 (514)
.+.|++.+--.|..++.+.|+..||...|++.. ...|....-.+..+....+++..|...++.+.+-.|. .+.+.
T Consensus 84 ~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 84 AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 344555555555555555555555555555432 2234455555555555555555555555555554432 33444
Q ss_pred HHHHHHHHHccChhHHHHHHHHHHh
Q 040365 349 VILSNTYAAARRWKDAASLRVFMRN 373 (514)
Q Consensus 349 ~~l~~~~~~~g~~~~a~~~~~~m~~ 373 (514)
..+...|...|++++|+..|+....
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHH
Confidence 4555555555555555555555443
No 186
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.06 E-value=0.23 Score=51.15 Aligned_cols=106 Identities=15% Similarity=0.229 Sum_probs=78.2
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 040365 183 LLDMYAKCGNIRLARCIFDKMDLHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKA 262 (514)
Q Consensus 183 li~~y~k~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 262 (514)
-+.-+..-|+..+|.++-.+..-||-..|-.-+.+++..+++++-+++-+.+. ...-|.-...+|.+.|+.++|
T Consensus 690 Tv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA 763 (829)
T KOG2280|consen 690 TVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEA 763 (829)
T ss_pred HHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHH
Confidence 34445667888888888888888888888888888888888887766655543 135566678888888999888
Q ss_pred HHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHh
Q 040365 263 WSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISN 304 (514)
Q Consensus 263 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 304 (514)
..++.+.. |.. -.+.+|.+.|++.+|.++--+
T Consensus 764 ~KYiprv~---~l~-------ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 764 KKYIPRVG---GLQ-------EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred hhhhhccC---ChH-------HHHHHHHHhccHHHHHHHHHH
Confidence 88887552 211 467788888888888766543
No 187
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.05 E-value=0.037 Score=49.59 Aligned_cols=167 Identities=9% Similarity=0.013 Sum_probs=109.9
Q ss_pred HHHHHHHHHHCCCHHHHHHHHccCCC--CCh--------hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 040365 79 GSSLINMYAKCARVEDSHRLFCLLPV--KDA--------ISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSI 148 (514)
Q Consensus 79 ~~~li~~~~~~g~~~~A~~~f~~~~~--~d~--------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 148 (514)
+++|...|.-..-+.+-...|+.-.. ..+ ..-+.++..+.-.|.+.-.+.++.+.++...+-++.....+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 35555555544444555555544322 122 23456777777788888888888888887666677777788
Q ss_pred HHHHhccCChHHHHHHHHHHHHcC-----CCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCC---CChhHHHHHHHHHHh
Q 040365 149 MPACAHLTTLHLGKQLHGCIIRNG-----FDDNMFIASSLLDMYAKCGNIRLARCIFDKMDL---HDIVSWTAVIMGNAL 220 (514)
Q Consensus 149 l~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~---~d~~~~~~li~~~~~ 220 (514)
.+.-.+.|+.+.|...++.+.+.. ...+..+.-.....|.-.+++..|...|++++. +|++.-|.-.-+..-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 888888899998888888776643 233333333444456667788888888887763 455666665555566
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHH
Q 040365 221 HGNAHDAISLFEQMEKDGVKPNSVAFV 247 (514)
Q Consensus 221 ~g~~~~A~~l~~~m~~~g~~p~~~t~~ 247 (514)
.|+..+|++.++.|.+. .|...+-+
T Consensus 299 lg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred HHHHHHHHHHHHHHhcc--CCccchhh
Confidence 78888888888888874 44444333
No 188
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.04 E-value=0.062 Score=49.35 Aligned_cols=174 Identities=10% Similarity=0.050 Sum_probs=98.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCC--C-hhH---HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-
Q 040365 183 LLDMYAKCGNIRLARCIFDKMDLH--D-IVS---WTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSH- 255 (514)
Q Consensus 183 li~~y~k~g~~~~A~~~~~~m~~~--d-~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~- 255 (514)
....+.+.|++++|.+.|+.+... + ... .-.+..+|.+.+++++|...|++..+.-..-...-+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 344456677888888877777522 1 111 233455667777788888887777764211112333333333321
Q ss_pred -cC---------------C---HHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 040365 256 -AG---------------L---IDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISNMHAGPTENVWLT 316 (514)
Q Consensus 256 -~g---------------~---~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ 316 (514)
.+ + ...|+..|+.++ +-|-.+.-..+|...+..+..+--.. --.
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li----------------~~yP~S~ya~~A~~rl~~l~~~la~~-e~~ 180 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLV----------------RGYPNSQYTTDATKRLVFLKDRLAKY-ELS 180 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHH----------------HHCcCChhHHHHHHHHHHHHHHHHHH-HHH
Confidence 10 1 112233333333 33333333444444333332110000 113
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCc---chHHHHHHHHHHccChhHHHHHHHHHHh
Q 040365 317 LLSACRVHKNVELAGKVAEKIFMIDPNNM---GAYVILSNTYAAARRWKDAASLRVFMRN 373 (514)
Q Consensus 317 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 373 (514)
+..-|.+.|.+..|..-++.+++.-|+.+ .+...+..+|...|..++|.++...+..
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 44558889999999999999999887654 4566888999999999999998876643
No 189
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.04 E-value=0.087 Score=49.75 Aligned_cols=89 Identities=13% Similarity=0.153 Sum_probs=36.9
Q ss_pred HHHHhC-CChHHHHHHHHHHHH----cCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCC----CCCH-hHHH
Q 040365 216 MGNALH-GNAHDAISLFEQMEK----DGVKPN--SVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGI----APSF-EHYA 283 (514)
Q Consensus 216 ~~~~~~-g~~~~A~~l~~~m~~----~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~----~p~~-~~~~ 283 (514)
..|-.. |++++|++.|++..+ .| .|. ...+..+...+.+.|++++|.++|+++....-- ..+. ..+.
T Consensus 122 ~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l 200 (282)
T PF14938_consen 122 EIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFL 200 (282)
T ss_dssp HHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence 334444 555555555555432 12 111 123444555555556666666666555432110 1111 1222
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC
Q 040365 284 AVADLLGRAGKLQEAYEFISNM 305 (514)
Q Consensus 284 ~li~~~~~~g~~~~A~~~~~~m 305 (514)
..+-++...|++..|.+.+++.
T Consensus 201 ~a~l~~L~~~D~v~A~~~~~~~ 222 (282)
T PF14938_consen 201 KAILCHLAMGDYVAARKALERY 222 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHH
Confidence 2333444455666665555553
No 190
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.99 E-value=0.021 Score=49.30 Aligned_cols=80 Identities=9% Similarity=-0.002 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 040365 108 ISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKP--RHVSFSSIMPACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLD 185 (514)
Q Consensus 108 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 185 (514)
..|..+...+...|++++|+..|++.......| ...++..+...+...|++++|...+....+.. +.....++.+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 345556666666677777777776665432121 12345555556666666666666666665542 222333444444
Q ss_pred HHH
Q 040365 186 MYA 188 (514)
Q Consensus 186 ~y~ 188 (514)
.|.
T Consensus 115 i~~ 117 (168)
T CHL00033 115 ICH 117 (168)
T ss_pred HHH
Confidence 444
No 191
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.99 E-value=0.00059 Score=40.93 Aligned_cols=33 Identities=30% Similarity=0.480 Sum_probs=30.6
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHHccChhHHHH
Q 040365 334 AEKIFMIDPNNMGAYVILSNTYAAARRWKDAAS 366 (514)
Q Consensus 334 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 366 (514)
++++++++|+++.+|..|+.+|...|++++|.+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 678899999999999999999999999999863
No 192
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.98 E-value=0.093 Score=50.66 Aligned_cols=161 Identities=19% Similarity=0.169 Sum_probs=105.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCC---Ch----hHHHHHHHHHHh---CCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 040365 182 SLLDMYAKCGNIRLARCIFDKMDLH---DI----VSWTAVIMGNAL---HGNAHDAISLFEQMEKDGVKPNSVAFVAVLT 251 (514)
Q Consensus 182 ~li~~y~k~g~~~~A~~~~~~m~~~---d~----~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 251 (514)
.|+-.|-...+++...++.+.+... ++ ..--...-++.+ .|+.++|++++..+......++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4455688899999999999988743 21 112233445556 7899999999999776666778888877776
Q ss_pred HHHc---------cCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHH----HHHHHH---HhC-----CCC--
Q 040365 252 ACSH---------AGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQ----EAYEFI---SNM-----HAG-- 308 (514)
Q Consensus 252 a~~~---------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~----~A~~~~---~~m-----~~~-- 308 (514)
.|-. ....++|+..|.+. +.+.|+..+--.++.++.-.|... +..++- ... ...
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 6532 23467788877744 566676544334444444444322 222222 111 011
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 040365 309 PTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNM 345 (514)
Q Consensus 309 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 345 (514)
.|--.+.+++.++.-.|+.+.|.+.++++..+.|+.-
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 3444557899999999999999999999999987653
No 193
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.96 E-value=0.037 Score=44.36 Aligned_cols=91 Identities=16% Similarity=0.239 Sum_probs=65.0
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHH
Q 040365 214 VIMGNALHGNAHDAISLFEQMEKDGVKPNS--VAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAP-SFEHYAAVADLLG 290 (514)
Q Consensus 214 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~ 290 (514)
+..++-..|+.++|+.+|++....|..... ..+..+.+++...|++++|..+|+.....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 345667789999999999999988876553 4567788888899999999999998876532211 1222223445677
Q ss_pred hcCCHHHHHHHHHh
Q 040365 291 RAGKLQEAYEFISN 304 (514)
Q Consensus 291 ~~g~~~~A~~~~~~ 304 (514)
..|+.++|++.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 88999998887644
No 194
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.95 E-value=0.0031 Score=57.51 Aligned_cols=86 Identities=21% Similarity=0.127 Sum_probs=76.5
Q ss_pred HHHhcCCHHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHH
Q 040365 288 LLGRAGKLQEAYEFISNMH-AG-PTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAA 365 (514)
Q Consensus 288 ~~~~~g~~~~A~~~~~~m~-~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 365 (514)
-+.+.+++++|+..|.+.. .. .|.+.|..=..+|.+.|.++.|.+-.+..+.++|....+|..|..+|...|++++|.
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence 3567899999999998864 34 477778888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 040365 366 SLRVFMRN 373 (514)
Q Consensus 366 ~~~~~m~~ 373 (514)
+.|++..+
T Consensus 170 ~aykKaLe 177 (304)
T KOG0553|consen 170 EAYKKALE 177 (304)
T ss_pred HHHHhhhc
Confidence 99886654
No 195
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.93 E-value=0.0035 Score=44.81 Aligned_cols=64 Identities=22% Similarity=0.258 Sum_probs=49.1
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCC
Q 040365 279 FEHYAAVADLLGRAGKLQEAYEFISNMH-AGP-TENVWLTLLSACRVHK-NVELAGKVAEKIFMIDP 342 (514)
Q Consensus 279 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~p 342 (514)
...|..+...+...|++++|+..|++.. ..| +...|..+..++...| ++++|+..++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4567777777888888888888887652 233 5667888888888888 78899999988888876
No 196
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.92 E-value=0.0018 Score=46.18 Aligned_cols=49 Identities=20% Similarity=0.260 Sum_probs=26.9
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 040365 255 HAGLIDKAWSYFNSMTKDYGIAP-SFEHYAAVADLLGRAGKLQEAYEFISNMH 306 (514)
Q Consensus 255 ~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 306 (514)
..|++++|..+|+.+... .| +...+..+..+|.+.|++++|.++++++.
T Consensus 3 ~~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR---NPDNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred hccCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345666666666665443 33 44555555666666666666666665553
No 197
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.88 E-value=0.076 Score=54.42 Aligned_cols=59 Identities=15% Similarity=0.178 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 040365 244 VAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISNM 305 (514)
Q Consensus 244 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 305 (514)
..|..+.......|++++|...+++.. .+.|+...|..+...+...|+.++|.+.+++.
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl---~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAI---DLEMSWLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445444444445566666666666664 33456666666666666666666666666553
No 198
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.84 E-value=0.036 Score=44.43 Aligned_cols=90 Identities=13% Similarity=0.050 Sum_probs=50.7
Q ss_pred HHHHHHHCCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC---cHHHHHHHHHHH
Q 040365 113 IIAGCVQNGLFDEGLKFFRQMLIAKIKPR--HVSFSSIMPACAHLTTLHLGKQLHGCIIRNGFDD---NMFIASSLLDMY 187 (514)
Q Consensus 113 li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~y 187 (514)
+..++-..|+.++|+.+|++....|...+ ...+..+.+.+...|++++|..+++...... +. +..+...+.-++
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHH
Confidence 34455667777777777777777765543 2344455566667777777777777665542 11 122222223344
Q ss_pred HhcCCHHHHHHHHHhC
Q 040365 188 AKCGNIRLARCIFDKM 203 (514)
Q Consensus 188 ~k~g~~~~A~~~~~~m 203 (514)
...|+.++|.+.+-..
T Consensus 86 ~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEA 101 (120)
T ss_pred HHCCCHHHHHHHHHHH
Confidence 5556666655555443
No 199
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.84 E-value=0.066 Score=50.56 Aligned_cols=117 Identities=21% Similarity=0.231 Sum_probs=72.2
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc-CCHHHHHHHHHHhHHhcCCCCC----HhHHHHHH
Q 040365 212 TAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHA-GLIDKAWSYFNSMTKDYGIAPS----FEHYAAVA 286 (514)
Q Consensus 212 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li 286 (514)
...+..|...|++..|-.++.++ ...|... |++++|.++|+....-+.-... ...+..+.
T Consensus 98 ~~A~~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A 162 (282)
T PF14938_consen 98 EKAIEIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAA 162 (282)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHH
Confidence 33456666677776666555554 4456666 7888888888877554322222 34566777
Q ss_pred HHHHhcCCHHHHHHHHHhCCC---C-C----CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 040365 287 DLLGRAGKLQEAYEFISNMHA---G-P----TEN-VWLTLLSACRVHKNVELAGKVAEKIFMIDPN 343 (514)
Q Consensus 287 ~~~~~~g~~~~A~~~~~~m~~---~-p----~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 343 (514)
..+.+.|++++|.++|++... . + +.. .+-..+-.+...||+..|...+++....+|.
T Consensus 163 ~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 163 DLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred HHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 888999999999999987531 1 1 111 2223333566678899999999998888764
No 200
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.70 E-value=0.25 Score=50.44 Aligned_cols=251 Identities=14% Similarity=0.050 Sum_probs=132.0
Q ss_pred HHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHH-CCCCCCH--HHHH--HH--HHHHhccCChHHHHHH
Q 040365 92 VEDSHRLFCLLPVKDAISWNSIIAGCVQNGLFDEGLKFFRQMLI-AKIKPRH--VSFS--SI--MPACAHLTTLHLGKQL 164 (514)
Q Consensus 92 ~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~--~t~~--~l--l~~~~~~~~~~~a~~~ 164 (514)
+++|.+..+. .|.+..|..+.....+.-.++-|...|-+... .|++.-. .|.. .+ ...-+--|.+++|+++
T Consensus 679 ledA~qfiEd--nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~ 756 (1189)
T KOG2041|consen 679 LEDAIQFIED--NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKL 756 (1189)
T ss_pred hHHHHHHHhc--CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhh
Confidence 5556665554 34556777777666666666666666655433 1221100 0000 00 1112234778888888
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCCC--C---hhHHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 040365 165 HGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMDLH--D---IVSWTAVIMGNALHGNAHDAISLFEQMEKDGV 239 (514)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~--d---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 239 (514)
+-.+-++. .-|.++.+.|++-...++++.-... | ..+|+.+...++....+++|.+.|..-..
T Consensus 757 yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--- 824 (1189)
T KOG2041|consen 757 YLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--- 824 (1189)
T ss_pred hhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---
Confidence 77665543 2467788888888877777654321 1 24677777777777777777776664321
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 040365 240 KPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISNMHAGPTENVWLTLLS 319 (514)
Q Consensus 240 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~ 319 (514)
. ...+.++.+..++++-..+-..+ +-+....-.+.+++.+.|.-++|.+.+-+-.. | .+.+.
T Consensus 825 ---~---e~~~ecly~le~f~~LE~la~~L------pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~-p-----kaAv~ 886 (1189)
T KOG2041|consen 825 ---T---ENQIECLYRLELFGELEVLARTL------PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL-P-----KAAVH 886 (1189)
T ss_pred ---h---HhHHHHHHHHHhhhhHHHHHHhc------CcccchHHHHHHHHHhhchHHHHHHHHHhccC-c-----HHHHH
Confidence 1 12344455555555444443333 22344455566677777777777665544431 1 22344
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCC-----------CcchHHHHHHHHHHccChhHHHHHHHHHHhC
Q 040365 320 ACRVHKNVELAGKVAEKIFMIDPN-----------NMGAYVILSNTYAAARRWKDAASLRVFMRNK 374 (514)
Q Consensus 320 ~~~~~~~~~~a~~~~~~~~~~~p~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 374 (514)
+|...+++.+|.++.++..--.-. ......--+..+-++|+.-+|.+++.+|.++
T Consensus 887 tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~ 952 (1189)
T KOG2041|consen 887 TCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAER 952 (1189)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHH
Confidence 455555555555444332100000 0011122345566667777777777766544
No 201
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.66 E-value=0.01 Score=57.97 Aligned_cols=63 Identities=19% Similarity=-0.029 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc---hHHHHHHHHHHccChhHHHHHHHHHHh
Q 040365 311 ENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMG---AYVILSNTYAAARRWKDAASLRVFMRN 373 (514)
Q Consensus 311 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~ 373 (514)
...|+.+..+|...|++++|+..+++.++++|++.. +|..++.+|...|+.++|...+++..+
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444444445555555555554444444442 244444445555555555444444443
No 202
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.59 E-value=0.017 Score=53.47 Aligned_cols=92 Identities=13% Similarity=0.023 Sum_probs=43.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC-CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---cchHHHHHH
Q 040365 282 YAAVADLLGRAGKLQEAYEFISNMH-AGPTE----NVWLTLLSACRVHKNVELAGKVAEKIFMIDPNN---MGAYVILSN 353 (514)
Q Consensus 282 ~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 353 (514)
|..-+..+.+.|++++|...|+.+. ..|+. ..+.-+..++...|+++.|...|+++....|++ +.++..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 3333333334445555554444432 11221 234444555555555555555555555554443 233333445
Q ss_pred HHHHccChhHHHHHHHHHHh
Q 040365 354 TYAAARRWKDAASLRVFMRN 373 (514)
Q Consensus 354 ~~~~~g~~~~a~~~~~~m~~ 373 (514)
+|...|++++|.++++.+.+
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555543
No 203
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.59 E-value=0.59 Score=42.94 Aligned_cols=64 Identities=14% Similarity=0.065 Sum_probs=35.6
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHH-HH---HHHHHHHhccCChHHHHHHHHHHHHc
Q 040365 106 DAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHV-SF---SSIMPACAHLTTLHLGKQLHGCIIRN 171 (514)
Q Consensus 106 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~---~~ll~~~~~~~~~~~a~~~~~~~~~~ 171 (514)
+...+-.....+.+.|++++|.+.|+++...- |+.. .. -.+..++-+.++++.|...++..++.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 33333344455566777777777777776642 3222 11 23344556666666666666666654
No 204
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.57 E-value=0.19 Score=45.27 Aligned_cols=229 Identities=12% Similarity=-0.037 Sum_probs=120.8
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-hccCC-hH-HHHHHHHHHHHc-CCCCcHHHHHH
Q 040365 107 AISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPAC-AHLTT-LH-LGKQLHGCIIRN-GFDDNMFIASS 182 (514)
Q Consensus 107 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~-~~~~~-~~-~a~~~~~~~~~~-~~~~~~~~~~~ 182 (514)
...|+.-+..+++....++|..-+....+-. .||- -|...=..+ .+.|. .. ..+.+|..+... |. -+++
T Consensus 69 lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD-~pdl-~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgn-----pqes 141 (366)
T KOG2796|consen 69 LQLWTVRLALLVKLRLFQNAEMELEPFGNLD-QPDL-YYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGN-----PQES 141 (366)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhhhhhhccCC-Ccce-eeeeccccCCCCcCccccHHHHHHHHHHHHhcCC-----cHHH
Confidence 3456666777777777777765554443321 1211 010000000 11222 11 123344444332 22 2455
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCC--C--------ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 040365 183 LLDMYAKCGNIRLARCIFDKMDL--H--------DIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTA 252 (514)
Q Consensus 183 li~~y~k~g~~~~A~~~~~~m~~--~--------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 252 (514)
|...|.-..-+++-...|+.-.. . -....+.++..+.-+|.+.-.+.++++.++...+-+..-...+.+.
T Consensus 142 LdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~ 221 (366)
T KOG2796|consen 142 LDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRI 221 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHH
Confidence 55555544444444444443321 1 2234456666666678888888888888886555566677777777
Q ss_pred HHccCCHHHHHHHHHHhHHhcCCCCCHhHHHH-----HHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcC
Q 040365 253 CSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAA-----VADLLGRAGKLQEAYEFISNMHAG--PTENVWLTLLSACRVHK 325 (514)
Q Consensus 253 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~-----li~~~~~~g~~~~A~~~~~~m~~~--p~~~~~~~ll~~~~~~~ 325 (514)
-.+.|+.+.|..+|+...+..+ ..+....+. ....|.-++++.+|...+.+++.. .|+...|.-.-+..-.|
T Consensus 222 ~MQ~GD~k~a~~yf~~vek~~~-kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg 300 (366)
T KOG2796|consen 222 SMQIGDIKTAEKYFQDVEKVTQ-KLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLG 300 (366)
T ss_pred HHhcccHHHHHHHHHHHHHHHh-hhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHH
Confidence 7888899888888887754422 122222222 223344556666666666666422 23333333333334456
Q ss_pred CHHHHHHHHHHHHhcCCC
Q 040365 326 NVELAGKVAEKIFMIDPN 343 (514)
Q Consensus 326 ~~~~a~~~~~~~~~~~p~ 343 (514)
+...|.+..+.+.+..|.
T Consensus 301 ~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 301 KLKDALKQLEAMVQQDPR 318 (366)
T ss_pred HHHHHHHHHHHHhccCCc
Confidence 666666666666666654
No 205
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.54 E-value=0.0055 Score=39.28 Aligned_cols=42 Identities=24% Similarity=0.445 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 040365 312 NVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSN 353 (514)
Q Consensus 312 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 353 (514)
.+|..+..++...|++++|+++++++++.+|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 367888999999999999999999999999999988877653
No 206
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.51 E-value=0.048 Score=50.55 Aligned_cols=101 Identities=14% Similarity=0.129 Sum_probs=62.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC----CHHHHHHHH
Q 040365 245 AFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAP-SFEHYAAVADLLGRAGKLQEAYEFISNMHA-GP----TENVWLTLL 318 (514)
Q Consensus 245 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~p----~~~~~~~ll 318 (514)
.|...+....+.|++++|...|+.+.+.+.-.+ ....+-.+...|...|++++|...|+.+.. .| ....+..+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444444455677777777777665532221 124455666677777777777777766531 12 234455556
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 040365 319 SACRVHKNVELAGKVAEKIFMIDPNNM 345 (514)
Q Consensus 319 ~~~~~~~~~~~a~~~~~~~~~~~p~~~ 345 (514)
..+...|+.+.|...++++++..|++.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 667778888888888888888888754
No 207
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.49 E-value=0.84 Score=43.66 Aligned_cols=282 Identities=14% Similarity=0.113 Sum_probs=179.3
Q ss_pred HHHHHHHHH--HCCCHHHHHHHHccCC---CCChhHHHHHHHH--HHHCCChhHHHHHHHHHHHCCCCCCHHH--HHHHH
Q 040365 79 GSSLINMYA--KCARVEDSHRLFCLLP---VKDAISWNSIIAG--CVQNGLFDEGLKFFRQMLIAKIKPRHVS--FSSIM 149 (514)
Q Consensus 79 ~~~li~~~~--~~g~~~~A~~~f~~~~---~~d~~~~~~li~~--~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~ll 149 (514)
|.+|-.++. -.|+-..|+++-.+-. ..|....-.++.+ -.-.|+++.|.+-|+.|... |.... +..|.
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLy 161 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLY 161 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHH
Confidence 344444433 3567777777655433 2343333333332 33468999999999999762 32221 22333
Q ss_pred HHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCC-----CCChh--HHHHHHHHHHh--
Q 040365 150 PACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMD-----LHDIV--SWTAVIMGNAL-- 220 (514)
Q Consensus 150 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~-----~~d~~--~~~~li~~~~~-- 220 (514)
-..-+.|+.+.|++.-+..-..- +.-...+.+++...+..|+++.|+++.+.-. ++|+. .-..|+.+-+.
T Consensus 162 leAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ 240 (531)
T COG3898 162 LEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL 240 (531)
T ss_pred HHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Confidence 33456788888888877765543 3334567788999999999999999998754 44442 22333333221
Q ss_pred -CCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHH
Q 040365 221 -HGNAHDAISLFEQMEKDGVKPNSVA-FVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEA 298 (514)
Q Consensus 221 -~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 298 (514)
.-+...|.+.-.+..+ +.||.+- -.....++.+.|++.++-.+++.+.+. .|.+..+...+ +.|.|+....
T Consensus 241 ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY~--~ar~gdta~d 313 (531)
T COG3898 241 LDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALLYV--RARSGDTALD 313 (531)
T ss_pred hcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHHH--HhcCCCcHHH
Confidence 2345556555554443 5677543 334456788999999999999988654 67776654444 3455553221
Q ss_pred --H--HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHc-cChhHHHHHHHHHHh
Q 040365 299 --Y--EFISNMHAGPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAA-RRWKDAASLRVFMRN 373 (514)
Q Consensus 299 --~--~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~ 373 (514)
. +-++.|+ +.+..+--++..+-...|++..|..-.+.+....|. .+.|..|.++-... |+-.++...+.+-.+
T Consensus 314 RlkRa~~L~slk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 314 RLKRAKKLESLK-PNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHHhcC-ccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 1 1233443 345667777888888999999999999998888886 46888888876544 888888887776554
No 208
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.38 E-value=0.54 Score=40.19 Aligned_cols=99 Identities=15% Similarity=0.022 Sum_probs=55.1
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCC-----CChhHHHH
Q 040365 139 KPRHVSFSSIMPACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMDL-----HDIVSWTA 213 (514)
Q Consensus 139 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~-----~d~~~~~~ 213 (514)
.|+...-..+..+....|+..+|...+++....-+..|..+.-.+.++....++...|...++.+-+ +...+.-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 4555555555566666666666666666665554555555555566666666666666665555431 12223333
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHc
Q 040365 214 VIMGNALHGNAHDAISLFEQMEKD 237 (514)
Q Consensus 214 li~~~~~~g~~~~A~~l~~~m~~~ 237 (514)
+...|.-.|++.+|..-|+.....
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh
Confidence 445555566666666666665553
No 209
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.28 E-value=0.036 Score=50.15 Aligned_cols=102 Identities=15% Similarity=0.124 Sum_probs=83.8
Q ss_pred HHHHHHHHhCC--CCChhHHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC---------
Q 040365 194 RLARCIFDKMD--LHDIVSWTAVIMGNALH-----GNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAG--------- 257 (514)
Q Consensus 194 ~~A~~~~~~m~--~~d~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g--------- 257 (514)
-..++.|...+ ++|-.+|-+++..|..+ +..+-....++.|.+.|+.-|..+|..||+.+-+..
T Consensus 51 v~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~ 130 (406)
T KOG3941|consen 51 VHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQK 130 (406)
T ss_pred cchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHH
Confidence 34466777776 78899999999988764 567778888999999999999999999998775532
Q ss_pred -------CHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHH
Q 040365 258 -------LIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQ 296 (514)
Q Consensus 258 -------~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 296 (514)
+-+=++.++++| +.+|+.||-++-..|+.++++.+..-
T Consensus 131 ~F~HYP~QQ~C~I~vLeqM-E~hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 131 VFLHYPQQQNCAIKVLEQM-EWHGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred HHhhCchhhhHHHHHHHHH-HHcCCCCchHHHHHHHHHhccccccH
Confidence 234578999999 77899999999999999999988643
No 210
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.25 E-value=1.8 Score=44.96 Aligned_cols=327 Identities=16% Similarity=0.080 Sum_probs=173.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCCh--HHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 040365 10 NTVIVGLARNGLYEEALNIVRQMGNVNLKPDSFTLSSVLPIFADYVDV--IKGKEIHGYAIRHGLDANVCIGSSLINMYA 87 (514)
Q Consensus 10 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~--~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 87 (514)
..+|.-++..+.+..|+++-..|...-..- ...|.....-..+..+. +.+.+....=+.... .+-..|..+..---
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay 518 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAY 518 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHH
Confidence 345666666677777777766664322111 34444444444433221 111111111111111 23344555555555
Q ss_pred HCCCHHHHHHHHccCCCC--------ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChH
Q 040365 88 KCARVEDSHRLFCLLPVK--------DAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLH 159 (514)
Q Consensus 88 ~~g~~~~A~~~f~~~~~~--------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 159 (514)
.+|+.+-|.++++.=+.. +..-+...+.-..+.|+.+-...++..|... .+...|... ..+..
T Consensus 519 ~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~~~------l~~~p 589 (829)
T KOG2280|consen 519 QEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLFMT------LRNQP 589 (829)
T ss_pred hcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHHH------HHhch
Confidence 677777777777653321 1122334444455556665555555554432 111111111 12233
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHh-C------CCCChhHHHHHHHHHHhCCC---------
Q 040365 160 LGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDK-M------DLHDIVSWTAVIMGNALHGN--------- 223 (514)
Q Consensus 160 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~-m------~~~d~~~~~~li~~~~~~g~--------- 223 (514)
.|..++.+..+..-. ..|-+.|-...+.. +...|.. - .++-.........++++...
T Consensus 590 ~a~~lY~~~~r~~~~------~~l~d~y~q~dn~~-~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~e 662 (829)
T KOG2280|consen 590 LALSLYRQFMRHQDR------ATLYDFYNQDDNHQ-ALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALE 662 (829)
T ss_pred hhhHHHHHHHHhhch------hhhhhhhhcccchh-hhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHH
Confidence 344444444332100 11222333322222 2222211 1 01111222223333333322
Q ss_pred -hHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 040365 224 -AHDAISLFEQMEK-DGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEF 301 (514)
Q Consensus 224 -~~~A~~l~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 301 (514)
..+-+.+++.+.. .|..-...|.+--+.-+...|+..+|.++-.... -|+...|-.-+.+++..+++++-+++
T Consensus 663 d~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekf 737 (829)
T KOG2280|consen 663 DQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKF 737 (829)
T ss_pred HHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHH
Confidence 1122233333332 2333445566667777888899999998877662 47888888889999999999999888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHH
Q 040365 302 ISNMHAGPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVF 370 (514)
Q Consensus 302 ~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 370 (514)
-+..+ .+.-|.-+..+|.+.|+.++|...+.+.-. +.-...+|.+.|++.+|.++--+
T Consensus 738 Akskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 738 AKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HhccC---CCCCchhHHHHHHhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHHHH
Confidence 87765 356678889999999999999988776422 22578899999999999887543
No 211
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.21 E-value=2.1 Score=45.39 Aligned_cols=219 Identities=11% Similarity=0.060 Sum_probs=150.7
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHH--hCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHCCCH
Q 040365 15 GLARNGLYEEALNIVRQMGNVNLKPDSFTLSSVLPIF--ADYVDVIKGKEIHGYAIRHGLDANVCIGSSLINMYAKCARV 92 (514)
Q Consensus 15 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~--~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 92 (514)
.....+++.+|+....++.+. .||. .|..+++++ .+.|+.++|..+++.....+ ..|..+...+-..|-..|+.
T Consensus 18 d~ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhh
Confidence 345568899999999988775 3553 466677766 57899999998887766555 44888999999999999999
Q ss_pred HHHHHHHccCCC--CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC----------hHH
Q 040365 93 EDSHRLFCLLPV--KDAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTT----------LHL 160 (514)
Q Consensus 93 ~~A~~~f~~~~~--~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~----------~~~ 160 (514)
++|..++++... |+......+..+|++-+.+.+-.+.=-+|.+ .++-+.+.|-++++...+.-. +..
T Consensus 94 d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 94 DEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred hHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 999999999874 4545555667778887776554333333333 356677888888877654321 344
Q ss_pred HHHHHHHHHHcC-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHh-----CCCCChhHHHHHHHHHHhCCChHHHHHHHHHH
Q 040365 161 GKQLHGCIIRNG-FDDNMFIASSLLDMYAKCGNIRLARCIFDK-----MDLHDIVSWTAVIMGNALHGNAHDAISLFEQM 234 (514)
Q Consensus 161 a~~~~~~~~~~~-~~~~~~~~~~li~~y~k~g~~~~A~~~~~~-----m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m 234 (514)
|....+.+++.+ -..+..=.-.-.......|.+++|.+++.. ...-+...-+--+.-+...+++.+..++-.++
T Consensus 173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 666677776654 111111111123344567889999998833 23445556666777888899999999999998
Q ss_pred HHcC
Q 040365 235 EKDG 238 (514)
Q Consensus 235 ~~~g 238 (514)
...|
T Consensus 253 l~k~ 256 (932)
T KOG2053|consen 253 LEKG 256 (932)
T ss_pred HHhC
Confidence 8875
No 212
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.20 E-value=0.35 Score=43.09 Aligned_cols=50 Identities=12% Similarity=-0.003 Sum_probs=37.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCcc---hHHHHHHHHHHccChhHHHH
Q 040365 317 LLSACRVHKNVELAGKVAEKIFMIDPNNMG---AYVILSNTYAAARRWKDAAS 366 (514)
Q Consensus 317 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~ 366 (514)
+..-|.+.|.+..|..-++.+++.-|+... +...|+.+|.+.|..+.+..
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 455688899999999999999999887653 45678888999998885443
No 213
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.19 E-value=0.023 Score=41.03 Aligned_cols=62 Identities=16% Similarity=0.170 Sum_probs=47.6
Q ss_pred HHHHhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchH
Q 040365 287 DLLGRAGKLQEAYEFISNMH-A-GPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAY 348 (514)
Q Consensus 287 ~~~~~~g~~~~A~~~~~~m~-~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 348 (514)
..|.+.+++++|.+.++.+. . +.+...|......+...|+++.|...+++.++..|+++...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 45777888888888888763 2 23566777788888889999999999999998888766443
No 214
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.19 E-value=0.075 Score=43.03 Aligned_cols=51 Identities=18% Similarity=0.258 Sum_probs=34.8
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHH
Q 040365 238 GVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADL 288 (514)
Q Consensus 238 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 288 (514)
...|+..+..+++.+++..|++..|.++.+...+.|+++-+...|..|+.-
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 355677777777777777777777777777777777766566666666543
No 215
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.16 E-value=1.9 Score=44.39 Aligned_cols=55 Identities=13% Similarity=0.146 Sum_probs=31.7
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHH
Q 040365 173 FDDNMFIASSLLDMYAKCGNIRLARCIFDKMDLHDIVSWTAVIMGNALHGNAHDAISLFE 232 (514)
Q Consensus 173 ~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~ 232 (514)
++.+....-.+.+|+...|.-++|.+.|-+-..|.. -+..|...+++.+|.++-+
T Consensus 848 Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pka-----Av~tCv~LnQW~~avelaq 902 (1189)
T KOG2041|consen 848 LPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPKA-----AVHTCVELNQWGEAVELAQ 902 (1189)
T ss_pred cCcccchHHHHHHHHHhhchHHHHHHHHHhccCcHH-----HHHHHHHHHHHHHHHHHHH
Confidence 455666666777777777777777777666544421 2233344444555554443
No 216
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.10 E-value=0.012 Score=43.16 Aligned_cols=61 Identities=16% Similarity=0.101 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----C---CCcchHHHHHHHHHHccChhHHHHHHHHHH
Q 040365 312 NVWLTLLSACRVHKNVELAGKVAEKIFMID----P---NNMGAYVILSNTYAAARRWKDAASLRVFMR 372 (514)
Q Consensus 312 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 372 (514)
.+++.+...+...|++++|+..+++.+++. + ....++..++.+|...|++++|.+.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345566666666666666666666665431 1 124566777778888888888888777653
No 217
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.10 E-value=0.35 Score=48.97 Aligned_cols=176 Identities=11% Similarity=0.086 Sum_probs=102.9
Q ss_pred HHHHHHHHHhcCCh--hHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 040365 9 WNTVIVGLARNGLY--EEALNIVRQMGNVNLKPDSFTLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSSLINMY 86 (514)
Q Consensus 9 ~~~li~~~~~~g~~--~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 86 (514)
++..=.+|.+-.+. -+-+.-+++|++.|-.|+.... ...|+-.|.+.+|-++|. +.|.+ |..+.+|
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk---~~G~e------nRAlEmy 668 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFK---RSGHE------NRALEMY 668 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHH---HcCch------hhHHHHH
Confidence 34444556654443 2344456777888877887654 345667788999888875 44533 4456677
Q ss_pred HHCCCHHHHHHHHccCCC---------CChhHHH-----HHHHHHHHCCChhHHHHHHHH------HHHCCC---CCCHH
Q 040365 87 AKCARVEDSHRLFCLLPV---------KDAISWN-----SIIAGCVQNGLFDEGLKFFRQ------MLIAKI---KPRHV 143 (514)
Q Consensus 87 ~~~g~~~~A~~~f~~~~~---------~d~~~~~-----~li~~~~~~g~~~~A~~l~~~------m~~~g~---~p~~~ 143 (514)
.....+|.|.++...-.. +-..+++ +....+...|+.++|..+.-+ +.+-+- ..+..
T Consensus 669 TDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere 748 (1081)
T KOG1538|consen 669 TDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAERE 748 (1081)
T ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhh
Confidence 666777777776654321 1111111 233445556666666654321 111111 22334
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 040365 144 SFSSIMPACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMDL 205 (514)
Q Consensus 144 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~ 205 (514)
+...+..-+-+...+..|.++|..|-+. .+++++....+++++|..+-++.++
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc
Confidence 4555555555666777777777766432 2577788888888888888888774
No 218
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.07 E-value=0.047 Score=52.04 Aligned_cols=254 Identities=13% Similarity=0.040 Sum_probs=151.5
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCChh----hHHHHHHHHhCCCChHHHHHHHHHHHH--h--CCC-CchhHHHHHHHH
Q 040365 15 GLARNGLYEEALNIVRQMGNVNLKPDSF----TLSSVLPIFADYVDVIKGKEIHGYAIR--H--GLD-ANVCIGSSLINM 85 (514)
Q Consensus 15 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~--~--g~~-~~~~~~~~li~~ 85 (514)
-+++.|+.+..+.+|+..++.|. -|-. .|..+-.+|.-.+++++|++.|..=+- . |-. -.......|-+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 47889999999999999999873 3433 456666777788899999998764321 1 100 011112223333
Q ss_pred HHHCCCHHHHHHHHcc-CC------CC--ChhHHHHHHHHHHHCCC--------------------hhHHHHHHHHHHH-
Q 040365 86 YAKCARVEDSHRLFCL-LP------VK--DAISWNSIIAGCVQNGL--------------------FDEGLKFFRQMLI- 135 (514)
Q Consensus 86 ~~~~g~~~~A~~~f~~-~~------~~--d~~~~~~li~~~~~~g~--------------------~~~A~~l~~~m~~- 135 (514)
+--.|.+++|...-.+ +. .+ ...++..+...|...|+ ++.|.++|.+=.+
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 3345666665433221 11 00 12234445555554443 1223333332111
Q ss_pred ---CCC-CCCHHHHHHHHHHHhccCChHHHHHHHHHHHH----cCC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHhCC--
Q 040365 136 ---AKI-KPRHVSFSSIMPACAHLTTLHLGKQLHGCIIR----NGF-DDNMFIASSLLDMYAKCGNIRLARCIFDKMD-- 204 (514)
Q Consensus 136 ---~g~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~-- 204 (514)
.|- -.-...|..+-..|--+|+++.|...|+.-+. .|- ......+..|.++|.-.|+++.|.+.|..-.
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 110 01112344444445556789999888876433 221 1234566778889999999999988887542
Q ss_pred -----CCC--hhHHHHHHHHHHhCCChHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHh
Q 040365 205 -----LHD--IVSWTAVIMGNALHGNAHDAISLFEQMEKD-----GVKPNSVAFVAVLTACSHAGLIDKAWSYFNSM 269 (514)
Q Consensus 205 -----~~d--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 269 (514)
.+. ..+..+|...|.-..++++|+.++.+-..- ...-....+-+|..++...|..++|..+...-
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 333 346777888888888899999988775431 12224467888999999999999998776654
No 219
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.88 E-value=0.71 Score=37.04 Aligned_cols=140 Identities=17% Similarity=0.184 Sum_probs=81.7
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHH
Q 040365 219 ALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEA 298 (514)
Q Consensus 219 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 298 (514)
...|..++..++..+.... .+..-++.++--....-+-+-..+.++.+-+-+.+. .+|++...
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHHH
Confidence 3456777777777776653 234455555544444444455555555553333222 23333333
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHhCCCc
Q 040365 299 YEFISNMHAGPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRNKGMK 377 (514)
Q Consensus 299 ~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 377 (514)
..-+-.+. .+.......++.....|+-+.-.+++..+...+..++....-++++|.+.|+..++..++.+.-++|++
T Consensus 76 i~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 33333322 233444566778888999999999999988766667889999999999999999999999999999975
No 220
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=1.9 Score=41.74 Aligned_cols=160 Identities=16% Similarity=-0.007 Sum_probs=95.6
Q ss_pred CCHHHHHHHH-HHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHH--HHHHhcCCHHHHHHHHHhCCCCChh-------
Q 040365 140 PRHVSFSSIM-PACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLL--DMYAKCGNIRLARCIFDKMDLHDIV------- 209 (514)
Q Consensus 140 p~~~t~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li--~~y~k~g~~~~A~~~~~~m~~~d~~------- 209 (514)
|.-.++-.+- ..+...++.+.|.++-..+++.. ..+ .+..++ .++--.++.+.|..-|++...-|..
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n--~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~ 242 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATN--AEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSA 242 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cch--hHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhH
Confidence 3334444332 23466788888887777776653 112 111222 2233457778888888877532221
Q ss_pred --------HHHHHHHHHHhCCChHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC
Q 040365 210 --------SWTAVIMGNALHGNAHDAISLFEQMEKD---GVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPS 278 (514)
Q Consensus 210 --------~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 278 (514)
.|..=..-..+.|++.+|.+.|.+.+.. .++|+...|........+.|+.++|+.--+... .+.|.
T Consensus 243 ~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al---~iD~s 319 (486)
T KOG0550|consen 243 SMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL---KIDSS 319 (486)
T ss_pred hhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh---hcCHH
Confidence 2222333456788899999999888762 345556667777777788888888888776554 33442
Q ss_pred -HhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 040365 279 -FEHYAAVADLLGRAGKLQEAYEFISNM 305 (514)
Q Consensus 279 -~~~~~~li~~~~~~g~~~~A~~~~~~m 305 (514)
+..|..-..++.-.+++++|.+-++..
T Consensus 320 yikall~ra~c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 320 YIKALLRRANCHLALEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233333344455567788888877764
No 221
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.80 E-value=0.14 Score=41.54 Aligned_cols=63 Identities=17% Similarity=0.284 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHhH--------------HhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHh
Q 040365 242 NSVAFVAVLTACSHAGLIDKAWSYFNSMT--------------KDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISN 304 (514)
Q Consensus 242 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~--------------~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 304 (514)
|..++..++.++++.|+++....+.+..- ....+.|+..+..+++.+|+..|++..|+++++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~ 77 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDF 77 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 34556666666666666666666655331 1123334445555555555555555555554443
No 222
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.69 E-value=0.026 Score=41.39 Aligned_cols=59 Identities=19% Similarity=0.180 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC-----C---CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040365 281 HYAAVADLLGRAGKLQEAYEFISNMH-----A---GPT-ENVWLTLLSACRVHKNVELAGKVAEKIFM 339 (514)
Q Consensus 281 ~~~~li~~~~~~g~~~~A~~~~~~m~-----~---~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 339 (514)
+|+.+...|.+.|++++|++.+++.. . .|+ ..++..+...+...|++++|++.+++.++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44445555555555555555554331 0 122 34566667777777777777777776654
No 223
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.68 E-value=2.1 Score=41.05 Aligned_cols=285 Identities=16% Similarity=0.111 Sum_probs=169.5
Q ss_pred HHHHHHHHHhc--CChhHHHHHHHHHhhCCCCCChhhHHHHHHHHh--CCCChHHHHHHHHHHHHhCCCCchhH--HHHH
Q 040365 9 WNTVIVGLARN--GLYEEALNIVRQMGNVNLKPDSFTLSSVLPIFA--DYVDVIKGKEIHGYAIRHGLDANVCI--GSSL 82 (514)
Q Consensus 9 ~~~li~~~~~~--g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~l 82 (514)
|.+|-.++... |+-..|.++-.+-.+. +..|...+..++.+-. -.|+.+.|++-|+-|.. .|.... ...|
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRgL 160 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRGL 160 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHHH
Confidence 55555555543 5556665555544321 3456666666665543 45888899998888874 222221 1222
Q ss_pred HHHHHHCCCHHHHHHHHccCCCC---ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCC-CCCCHHHH--HHHHHHHhc--
Q 040365 83 INMYAKCARVEDSHRLFCLLPVK---DAISWNSIIAGCVQNGLFDEGLKFFRQMLIAK-IKPRHVSF--SSIMPACAH-- 154 (514)
Q Consensus 83 i~~~~~~g~~~~A~~~f~~~~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~--~~ll~~~~~-- 154 (514)
.-.--+.|+.+.|...-+...+. =...|.+.+...+..|+++.|+++++.-++.. +.++..-- ..|+.+-+.
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ 240 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL 240 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Confidence 22334567777777766554421 23567888999999999999999998776543 44544322 233333221
Q ss_pred -cCChHHHHHHHHHHHHcCCCCcHHHHH-HHHHHHHhcCCHHHHHHHHHhCCC--CChhHHHHHHHHHHhCCChHHHHHH
Q 040365 155 -LTTLHLGKQLHGCIIRNGFDDNMFIAS-SLLDMYAKCGNIRLARCIFDKMDL--HDIVSWTAVIMGNALHGNAHDAISL 230 (514)
Q Consensus 155 -~~~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~y~k~g~~~~A~~~~~~m~~--~d~~~~~~li~~~~~~g~~~~A~~l 230 (514)
..+...|+..-.+..+. .||..-.. .-..+|.+.|++.++-.+++.+-+ |....|. +-.+++.| +.++.-
T Consensus 241 ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~--lY~~ar~g--dta~dR 314 (531)
T COG3898 241 LDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIAL--LYVRARSG--DTALDR 314 (531)
T ss_pred hcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHH--HHHHhcCC--CcHHHH
Confidence 12455555555555543 34432211 224678889999999998888853 3333332 22233444 445555
Q ss_pred HHHHHH-cCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHh-cCCHHHHHHHHHhCC
Q 040365 231 FEQMEK-DGVKPNS-VAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGR-AGKLQEAYEFISNMH 306 (514)
Q Consensus 231 ~~~m~~-~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~ 306 (514)
+++... ..++||. .+...+..+-...|++..|..--+... ...|....|..|.+.-.. .|+-.++...+.+..
T Consensus 315 lkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav 390 (531)
T COG3898 315 LKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQAV 390 (531)
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence 554433 3356664 566677777778888888877666553 457888888877776543 488888888777653
No 224
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.53 E-value=1.7 Score=38.75 Aligned_cols=59 Identities=12% Similarity=0.053 Sum_probs=28.2
Q ss_pred HHHHHHHCCChhHHHHHHHHHHHCCCC--CCHHHHHHHHHHHhccCChHHHHHHHHHHHHc
Q 040365 113 IIAGCVQNGLFDEGLKFFRQMLIAKIK--PRHVSFSSIMPACAHLTTLHLGKQLHGCIIRN 171 (514)
Q Consensus 113 li~~~~~~g~~~~A~~l~~~m~~~g~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 171 (514)
....+.+.|++.+|.+.|+++...-.. --....-.+..++-+.|+++.|...++..++.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344455666666666666666553110 01112223444555556666666555555543
No 225
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.49 E-value=0.33 Score=44.83 Aligned_cols=98 Identities=12% Similarity=0.014 Sum_probs=51.5
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc--C-CHHHHHHHHHhCC---CCChhHHH
Q 040365 139 KPRHVSFSSIMPACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKC--G-NIRLARCIFDKMD---LHDIVSWT 212 (514)
Q Consensus 139 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~--g-~~~~A~~~~~~m~---~~d~~~~~ 212 (514)
+-|...|..|..+|...++++.|..-|....+.. +++...+..+..++... | .-.++..+|+++. ..|+.+-.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 3345555555555555555555555555555542 33333333333332221 1 2345556666554 22445555
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHc
Q 040365 213 AVIMGNALHGNAHDAISLFEQMEKD 237 (514)
Q Consensus 213 ~li~~~~~~g~~~~A~~l~~~m~~~ 237 (514)
.+...+.+.|++.+|...|+.|...
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc
Confidence 5556666777777777777777664
No 226
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.48 E-value=0.17 Score=48.48 Aligned_cols=64 Identities=19% Similarity=0.073 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHhC
Q 040365 311 ENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRNK 374 (514)
Q Consensus 311 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 374 (514)
..++..|..++.+.+++..|++..++.++++|+|.-....=..+|...|.++.|+..|+++.+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 3467778888999999999999999999999999999999999999999999999999998764
No 227
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.41 E-value=0.92 Score=45.53 Aligned_cols=157 Identities=10% Similarity=0.058 Sum_probs=100.8
Q ss_pred HHhcCChhHHHHHHH-HHhhCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHCCCHHH
Q 040365 16 LARNGLYEEALNIVR-QMGNVNLKPDSFTLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSSLINMYAKCARVED 94 (514)
Q Consensus 16 ~~~~g~~~~A~~l~~-~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 94 (514)
..-+|+++++..+.+ .-.-..++ ..-...++.-+-+.|..+.|+++-.. + ..-.+...++|+++.
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D---------~---~~rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTD---------P---DHRFELALQLGNLDI 336 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-HHH
T ss_pred HHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCC---------h---HHHhHHHHhcCCHHH
Confidence 344677888776665 21111222 34467778888888888888776432 2 234566778999999
Q ss_pred HHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCC
Q 040365 95 SHRLFCLLPVKDAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLGKQLHGCIIRNGFD 174 (514)
Q Consensus 95 A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 174 (514)
|.++-++.. +...|..|.....+.|+++-|.+.|.+... |..++-.|.-.|+.+.-.++.......| .
T Consensus 337 A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~-~ 404 (443)
T PF04053_consen 337 ALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG-D 404 (443)
T ss_dssp HHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT--
T ss_pred HHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc-C
Confidence 999988776 667899999999999999999999987543 4556666777888888888887777766 2
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 040365 175 DNMFIASSLLDMYAKCGNIRLARCIFDKM 203 (514)
Q Consensus 175 ~~~~~~~~li~~y~k~g~~~~A~~~~~~m 203 (514)
+|.-..++.-.|++++..+++.+-
T Consensus 405 -----~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 405 -----INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp -----HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred -----HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 344444555567777777666543
No 228
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.22 E-value=0.53 Score=47.22 Aligned_cols=132 Identities=15% Similarity=0.205 Sum_probs=79.5
Q ss_pred HHhCCChHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHH
Q 040365 218 NALHGNAHDAISLFEQME-KDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQ 296 (514)
Q Consensus 218 ~~~~g~~~~A~~l~~~m~-~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 296 (514)
....|+++++.++.+.=. -..++ ..-...++.-+.+.|..+.|+++-..-. .-.++..++|+++
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~-------------~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPD-------------HRFELALQLGNLD 335 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH-------------HHHHHHHHCT-HH
T ss_pred HHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChH-------------HHhHHHHhcCCHH
Confidence 345677777665554111 11122 2335666777777788888777654322 1234556788888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHhCC
Q 040365 297 EAYEFISNMHAGPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRNKG 375 (514)
Q Consensus 297 ~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 375 (514)
.|.++.++.. +...|..|.......|+++.|+..+.+ ..-+..|+-.|...|+.+.-.++-+....+|
T Consensus 336 ~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k--------~~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 336 IALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQK--------AKDFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHH--------CT-HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHh--------hcCccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 8887766554 677888888888888888888888887 3456677778888888777777776666655
No 229
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.21 E-value=0.3 Score=46.91 Aligned_cols=95 Identities=16% Similarity=0.083 Sum_probs=77.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Q 040365 280 EHYAAVADLLGRAGKLQEAYEFISNMH--AGPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAA 357 (514)
Q Consensus 280 ~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 357 (514)
..+..|.-++.+.+++.+|++.-+... .++|+...-.=..++...|+++.|+..|+++++++|.|-.+-..|+.+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 456677788899999999998877652 346777777778899999999999999999999999998888888888877
Q ss_pred ccChhHH-HHHHHHHHhC
Q 040365 358 ARRWKDA-ASLRVFMRNK 374 (514)
Q Consensus 358 ~g~~~~a-~~~~~~m~~~ 374 (514)
...+.+. .++|..|-.+
T Consensus 338 ~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 7766555 7788888654
No 230
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.98 E-value=1.2 Score=43.83 Aligned_cols=64 Identities=13% Similarity=-0.005 Sum_probs=42.4
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCC-h---hHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 040365 174 DDNMFIASSLLDMYAKCGNIRLARCIFDKMD--LHD-I---VSWTAVIMGNALHGNAHDAISLFEQMEKD 237 (514)
Q Consensus 174 ~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~--~~d-~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 237 (514)
+.+...++.+..+|.+.|++++|...|++.. .|+ . .+|..+..+|...|+.++|++.+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3455666777777777777777777776643 333 2 34777777777777777777777776663
No 231
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.92 E-value=0.12 Score=43.17 Aligned_cols=57 Identities=16% Similarity=0.144 Sum_probs=28.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHH
Q 040365 10 NTVIVGLARNGLYEEALNIVRQMGNVNLKPDSFTLSSVLPIFADYVDVIKGKEIHGYA 67 (514)
Q Consensus 10 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 67 (514)
..++..+...|++++|+.+.+.+.... +-|...|..+|.++...|+...|.++|..+
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 334444555555555555555555432 334445555555555555555555555544
No 232
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.86 E-value=3.3 Score=38.41 Aligned_cols=141 Identities=17% Similarity=0.092 Sum_probs=64.5
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHH
Q 040365 217 GNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQ 296 (514)
Q Consensus 217 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 296 (514)
.....|++.+|..+|.......-. +...-..+..++...|+++.|..++..+..+.. .........-+..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~-~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ-DKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccch-hhHHHHHHHHHHHHHHHhcCC
Confidence 344556666666666666553211 223344455556666666666666665532100 000111112233344444444
Q ss_pred HHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCcchHHHHHHHHHHcc
Q 040365 297 EAYEFISNMHAGP-TENVWLTLLSACRVHKNVELAGKVAEKIFMID--PNNMGAYVILSNTYAAAR 359 (514)
Q Consensus 297 ~A~~~~~~m~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g 359 (514)
+..++-.+.-..| |...-..|...+...|+.+.|...+-.++..+ -.|...-..|+..+...|
T Consensus 221 ~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 221 EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 3333433333333 34444445555555555555555544444432 233444445555555444
No 233
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.82 E-value=2.9 Score=37.58 Aligned_cols=200 Identities=13% Similarity=0.116 Sum_probs=110.1
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCC--hhHHHHHHHHHHhCC
Q 040365 145 FSSIMPACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMDLHD--IVSWTAVIMGNALHG 222 (514)
Q Consensus 145 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~d--~~~~~~li~~~~~~g 222 (514)
|.-...+|-...++++++..+.+..+. .+.+...|. ....++.|.-+.++|.+-+ +..++--...|.++|
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G 105 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG 105 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC
Confidence 334445666677777777766655532 122222221 1223344444555554222 234566667788888
Q ss_pred ChHHHHHHHHHHHH--cCCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHH
Q 040365 223 NAHDAISLFEQMEK--DGVKPNSV--AFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEA 298 (514)
Q Consensus 223 ~~~~A~~l~~~m~~--~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 298 (514)
.++-|-..+++.-+ +++.|+.. .|..-+......++...|. +.|......|.+..++++|
T Consensus 106 spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~----------------el~gk~sr~lVrl~kf~Ea 169 (308)
T KOG1585|consen 106 SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAF----------------ELYGKCSRVLVRLEKFTEA 169 (308)
T ss_pred CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHH----------------HHHHHhhhHhhhhHHhhHH
Confidence 87777776666543 34555532 1222222222222222222 3344455567777777777
Q ss_pred HHHHHhCC-------CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCcchHHHHHHHHHHccChhHHHH
Q 040365 299 YEFISNMH-------AGPTE-NVWLTLLSACRVHKNVELAGKVAEKIFMI----DPNNMGAYVILSNTYAAARRWKDAAS 366 (514)
Q Consensus 299 ~~~~~~m~-------~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~p~~~~~~~~l~~~~~~~g~~~~a~~ 366 (514)
-..|.+-. .-|+. ..+-+.+-.+.-..|+..|+..++.-.+. .|++..+...|+.+| ..|+.+++.+
T Consensus 170 a~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~k 248 (308)
T KOG1585|consen 170 ATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKK 248 (308)
T ss_pred HHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHH
Confidence 66554432 11332 23455555666667888899888886554 366777888888887 4677777776
Q ss_pred HHH
Q 040365 367 LRV 369 (514)
Q Consensus 367 ~~~ 369 (514)
+..
T Consensus 249 vl~ 251 (308)
T KOG1585|consen 249 VLS 251 (308)
T ss_pred HHc
Confidence 654
No 234
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.70 E-value=2.9 Score=37.00 Aligned_cols=194 Identities=19% Similarity=0.135 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhCC-----CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 040365 177 MFIASSLLDMYAKCGNIRLARCIFDKMD-----LHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLT 251 (514)
Q Consensus 177 ~~~~~~li~~y~k~g~~~~A~~~~~~m~-----~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 251 (514)
..........+...+.+..+...+.... ......+......+...+....+.+.+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 3444555555666666666666555543 22334455555555556666666666666665332221 11111222
Q ss_pred -HHHccCCHHHHHHHHHHhHHhcCCCC----CHhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHh
Q 040365 252 -ACSHAGLIDKAWSYFNSMTKDYGIAP----SFEHYAAVADLLGRAGKLQEAYEFISNMH-AGP--TENVWLTLLSACRV 323 (514)
Q Consensus 252 -a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p--~~~~~~~ll~~~~~ 323 (514)
++...|+++.+...+..... ..| ....+......+...++.++|...+.... ..+ ....+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 56667777777777776632 222 22333333444556677777777766653 222 25666777777777
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHhC
Q 040365 324 HKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRNK 374 (514)
Q Consensus 324 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 374 (514)
.++.+.+...+.......|.....+..+...+...|.++++...+......
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777777777764555556666666666677777777666543
No 235
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.64 E-value=0.33 Score=44.21 Aligned_cols=112 Identities=8% Similarity=0.040 Sum_probs=82.4
Q ss_pred HHHHHHHHccCC--CCChhHHHHHHHHHHHC-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC--------
Q 040365 92 VEDSHRLFCLLP--VKDAISWNSIIAGCVQN-----GLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLT-------- 156 (514)
Q Consensus 92 ~~~A~~~f~~~~--~~d~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~-------- 156 (514)
+-..++.|...+ ++|-.+|-+++..|... +..+-....++.|.+.|+.-|..+|..||..+-+-.
T Consensus 50 Lv~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ 129 (406)
T KOG3941|consen 50 LVHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQ 129 (406)
T ss_pred ccchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHH
Confidence 334566777776 67888898888888654 456666677889999999999999999998765432
Q ss_pred --------ChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCH-HHHHHHHHhC
Q 040365 157 --------TLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNI-RLARCIFDKM 203 (514)
Q Consensus 157 --------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~-~~A~~~~~~m 203 (514)
+-+-+..++++|...|+-||-.+-..|++++++.|-. .+..+..--|
T Consensus 130 ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 130 KVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 2345778888888889999988888888888877753 3334443334
No 236
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.64 E-value=2.1 Score=35.29 Aligned_cols=83 Identities=14% Similarity=0.235 Sum_probs=37.3
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHCCCHHHHHHHHccCCCCChhHHHHHHHHHHHCCChhH
Q 040365 46 SVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSSLINMYAKCARVEDSHRLFCLLPVKDAISWNSIIAGCVQNGLFDE 125 (514)
Q Consensus 46 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~ 125 (514)
.++..+...+........++.+.+.+ ..+....|.++..|++.+. ......+.. ..+.......++.|.+.+.+++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~~ 87 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN--KSNHYDIEKVGKLCEKAKLYEE 87 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh--ccccCCHHHHHHHHHHcCcHHH
Confidence 34444444455555555555555554 3445555666666655432 222233331 1122222334444444444444
Q ss_pred HHHHHHH
Q 040365 126 GLKFFRQ 132 (514)
Q Consensus 126 A~~l~~~ 132 (514)
+.-++.+
T Consensus 88 ~~~l~~k 94 (140)
T smart00299 88 AVELYKK 94 (140)
T ss_pred HHHHHHh
Confidence 4444444
No 237
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.59 E-value=4.1 Score=39.58 Aligned_cols=30 Identities=23% Similarity=0.128 Sum_probs=21.4
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHhHH
Q 040365 242 NSVAFVAVLTACSHAGLIDKAWSYFNSMTK 271 (514)
Q Consensus 242 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 271 (514)
|--.+.+++.++.-.|+.+.|.+..+.|.+
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 444556677777778888888888887753
No 238
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.54 E-value=5.2 Score=39.27 Aligned_cols=128 Identities=16% Similarity=0.128 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhHHhcC-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHh-CCCCCCHHHH-HHHHHH
Q 040365 244 VAFVAVLTACSHAGLIDKAWSYFNSMTKDYG-IAPSFEHYAAVADLLGRAGKLQEAYEFISN-MHAGPTENVW-LTLLSA 320 (514)
Q Consensus 244 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~p~~~~~-~~ll~~ 320 (514)
..|...+++-.+..-++.|+.+|-...+. + +.+++..+++++.-++ .|+..-|..+|+- |..-||...| +-.+.-
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhcc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 45667777878888899999999999665 5 5678889999988665 5778889999875 4444666554 445666
Q ss_pred HHhcCCHHHHHHHHHHHHhcCC--CCcchHHHHHHHHHHccChhHHHHHHHHHHh
Q 040365 321 CRVHKNVELAGKVAEKIFMIDP--NNMGAYVILSNTYAAARRWKDAASLRVFMRN 373 (514)
Q Consensus 321 ~~~~~~~~~a~~~~~~~~~~~p--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 373 (514)
+...++-+.|..+|+...+.-. .-...|.-++.--..-|+...|..+-++|.+
T Consensus 476 Li~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 476 LIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 7778888899999986654321 1245788888888888888777777666654
No 239
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.45 E-value=0.36 Score=44.03 Aligned_cols=95 Identities=20% Similarity=0.208 Sum_probs=61.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-HhHHHHHHH
Q 040365 211 WTAVIMGNALHGNAHDAISLFEQMEKDGVKP--NSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPS-FEHYAAVAD 287 (514)
Q Consensus 211 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~ 287 (514)
|+.-+.. .+.|++.+|...|...++....- ..-.+-.|..++...|+++.|..+|..+.++++-.|. ++.+--|..
T Consensus 145 Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 5554443 34566777777777777642110 1123445777777788888888888877777666663 466666777
Q ss_pred HHHhcCCHHHHHHHHHhCC
Q 040365 288 LLGRAGKLQEAYEFISNMH 306 (514)
Q Consensus 288 ~~~~~g~~~~A~~~~~~m~ 306 (514)
...+.|+.++|...+++..
T Consensus 224 ~~~~l~~~d~A~atl~qv~ 242 (262)
T COG1729 224 SLGRLGNTDEACATLQQVI 242 (262)
T ss_pred HHHHhcCHHHHHHHHHHHH
Confidence 7777777777777776654
No 240
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.42 E-value=0.83 Score=43.23 Aligned_cols=44 Identities=11% Similarity=0.182 Sum_probs=20.6
Q ss_pred HHCCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHhccCChHHH
Q 040365 118 VQNGLFDEGLKFFRQMLIA--KIKPRHVSFSSIMPACAHLTTLHLG 161 (514)
Q Consensus 118 ~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~a 161 (514)
.+..+.++|+..+.+-... ...---.+|..+..+.++.|.++++
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~m 62 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEM 62 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHH
Confidence 3455666666666554432 0111123444555555555555444
No 241
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.38 E-value=1.2 Score=44.20 Aligned_cols=68 Identities=16% Similarity=0.114 Sum_probs=43.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CcchHHHHHHHHHHccChhHHHHHHHHHHhCCCccCCc
Q 040365 314 WLTLLSACRVHKNVELAGKVAEKIFMIDPN--NMGAYVILSNTYAAARRWKDAASLRVFMRNKGMKKTPA 381 (514)
Q Consensus 314 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 381 (514)
=..|..++.+.|+.++|++.++++++..|. +......|+.++...+++.++..++.+-.+-...+...
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAt 331 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSAT 331 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHH
Confidence 345666667777777777777777665543 33456677777777777777777777654444444443
No 242
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.26 E-value=4.2 Score=41.42 Aligned_cols=161 Identities=14% Similarity=0.095 Sum_probs=106.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHc-CCCCCH-----HHHHHHHHHHHc----cCCHHHHHHHHHHhHHhcCCCCCHh
Q 040365 211 WTAVIMGNALHGNAHDAISLFEQMEKD-GVKPNS-----VAFVAVLTACSH----AGLIDKAWSYFNSMTKDYGIAPSFE 280 (514)
Q Consensus 211 ~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~-----~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~ 280 (514)
...+++...-.|+-+.+++++.+-.+. ++.-.. .+|..++..+.. ....+.+.+++..+.+. -|+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcH
Confidence 334555555677778888777776552 232211 223333333332 45788899999999765 46655
Q ss_pred HHHHH-HHHHHhcCCHHHHHHHHHhCCC-C-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHH-HHH
Q 040365 281 HYAAV-ADLLGRAGKLQEAYEFISNMHA-G-----PTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYV-ILS 352 (514)
Q Consensus 281 ~~~~l-i~~~~~~g~~~~A~~~~~~m~~-~-----p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~-~l~ 352 (514)
.|... ...+...|++++|.+.|++... + -....+--+...+....++++|...|.++.+.+.-+...|. ..+
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 55433 4567788999999999997542 1 12234445666778889999999999999998766556666 445
Q ss_pred HHHHHccCh-------hHHHHHHHHHHhC
Q 040365 353 NTYAAARRW-------KDAASLRVFMRNK 374 (514)
Q Consensus 353 ~~~~~~g~~-------~~a~~~~~~m~~~ 374 (514)
.+|...|+. ++|.+++.+....
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 556778888 8888888877543
No 243
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.19 E-value=0.1 Score=30.92 Aligned_cols=32 Identities=19% Similarity=0.200 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 040365 312 NVWLTLLSACRVHKNVELAGKVAEKIFMIDPN 343 (514)
Q Consensus 312 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 343 (514)
.+|..+..++...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46788888888888888888888888888885
No 244
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.17 E-value=0.61 Score=37.32 Aligned_cols=89 Identities=19% Similarity=0.102 Sum_probs=66.8
Q ss_pred HHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCC---cchHHHHHHHHHHccCh
Q 040365 288 LLGRAGKLQEAYEFISNMH--AGPTENVWLTLLSACRVHKNVELAGKVAEKIFMID-PNN---MGAYVILSNTYAAARRW 361 (514)
Q Consensus 288 ~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-p~~---~~~~~~l~~~~~~~g~~ 361 (514)
+++..|+++.|++.|.+.. .+.....||.-..+++-.|+.++|..-+++++++. |.. -.+|+.-...|-..|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 4677888888888887652 23456778888888888888888888888888875 332 13566667778888888
Q ss_pred hHHHHHHHHHHhCCC
Q 040365 362 KDAASLRVFMRNKGM 376 (514)
Q Consensus 362 ~~a~~~~~~m~~~g~ 376 (514)
+.|+.=|+...+.|-
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 888888888777663
No 245
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.02 E-value=0.16 Score=29.91 Aligned_cols=33 Identities=36% Similarity=0.371 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 040365 312 NVWLTLLSACRVHKNVELAGKVAEKIFMIDPNN 344 (514)
Q Consensus 312 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 344 (514)
..|..+...+...|++++|++.++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356777788888888888888888888888764
No 246
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.02 E-value=3 Score=34.44 Aligned_cols=39 Identities=10% Similarity=-0.042 Sum_probs=17.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCC---ChhHHHHHHHHHHhC
Q 040365 183 LLDMYAKCGNIRLARCIFDKMDLH---DIVSWTAVIMGNALH 221 (514)
Q Consensus 183 li~~y~k~g~~~~A~~~~~~m~~~---d~~~~~~li~~~~~~ 221 (514)
++..+.+.+........++.+... +....|.++..|++.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH
Confidence 344444444444554444444321 233444444444443
No 247
>PRK11906 transcriptional regulator; Provisional
Probab=93.99 E-value=1.1 Score=44.39 Aligned_cols=78 Identities=8% Similarity=-0.018 Sum_probs=56.5
Q ss_pred HHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHH
Q 040365 295 LQEAYEFISNMH--AGPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMR 372 (514)
Q Consensus 295 ~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 372 (514)
..+|.++.+... .+.|......+..+....++++.|...|+++..++|+.+.+|...+....-.|+.++|.+.+++-.
T Consensus 320 ~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 320 AQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 445555555442 234666666666666777778888888888888888888888888888888888888888877643
No 248
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.89 E-value=13 Score=41.25 Aligned_cols=82 Identities=22% Similarity=0.140 Sum_probs=41.1
Q ss_pred HHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 040365 249 VLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISNMHAGPTENVWLTLLSACRVHKNVE 328 (514)
Q Consensus 249 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~ 328 (514)
.+.+|...|+|++|..+..++.. +-.--..+-..|+.-+...++.-+|-++..+.-..|.. .+..+++...++
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~-----av~ll~ka~~~~ 1043 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEE-----AVALLCKAKEWE 1043 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHH-----HHHHHhhHhHHH
Confidence 34555666666666666655521 11111222345566666666666666666655433321 223334444566
Q ss_pred HHHHHHHHH
Q 040365 329 LAGKVAEKI 337 (514)
Q Consensus 329 ~a~~~~~~~ 337 (514)
+|.++....
T Consensus 1044 eAlrva~~~ 1052 (1265)
T KOG1920|consen 1044 EALRVASKA 1052 (1265)
T ss_pred HHHHHHHhc
Confidence 666555543
No 249
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=93.80 E-value=2.1 Score=41.91 Aligned_cols=145 Identities=11% Similarity=0.095 Sum_probs=95.3
Q ss_pred hhhHHHHHHHHhCCCChHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHHCCCHHHHHHHHccCC--CCChhHH-HHHHHH
Q 040365 41 SFTLSSVLPIFADYVDVIKGKEIHGYAIRHG-LDANVCIGSSLINMYAKCARVEDSHRLFCLLP--VKDAISW-NSIIAG 116 (514)
Q Consensus 41 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~--~~d~~~~-~~li~~ 116 (514)
.+.|...+.+..+...++.|+.+|..+.+.| ..+++.++++++.-|+ .|+...|-++|+.-. -+|+..| +-.+.-
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 3556667777777777888888888888887 5678888888887665 567777888887533 3444433 445566
Q ss_pred HHHCCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 040365 117 CVQNGLFDEGLKFFRQMLIAKIKPR--HVSFSSIMPACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAK 189 (514)
Q Consensus 117 ~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k 189 (514)
+...++-+.|..+|+..... +..+ ...|..+|.--+..|++..+..+-+.+... -|-..+.....+.|+-
T Consensus 476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~i 547 (660)
T COG5107 476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYAI 547 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHhh
Confidence 66777888888888754432 2223 456777787777888887777776666554 2333333444445543
No 250
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.79 E-value=2.9 Score=34.36 Aligned_cols=61 Identities=16% Similarity=0.162 Sum_probs=31.8
Q ss_pred HHHhCCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC
Q 040365 217 GNALHGNAHDAISLFEQMEKDGV--KPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAP 277 (514)
Q Consensus 217 ~~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 277 (514)
...+.|++++|.+.|+.+...=. +-....-..++.++.+.+++++|...+++.++-+.-.|
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 33455666666666666655310 01223444555666666666666666666655433333
No 251
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.68 E-value=2.9 Score=39.51 Aligned_cols=134 Identities=12% Similarity=0.190 Sum_probs=74.9
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--cC----ChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHH
Q 040365 123 FDEGLKFFRQMLIAKIKPRHVSFSSIMPACAH--LT----TLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLA 196 (514)
Q Consensus 123 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A 196 (514)
+++.+.+++.|.+.|++-+..+|.+....... .. ....+..+|+.|.+.-.-.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fL--------------------- 136 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFL--------------------- 136 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccc---------------------
Confidence 34556788888999998888888765444333 11 2344556666665542100
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhCCC----hHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCC--HHHHHHHHHH
Q 040365 197 RCIFDKMDLHDIVSWTAVIMGNALHGN----AHDAISLFEQMEKDGVKPNS--VAFVAVLTACSHAGL--IDKAWSYFNS 268 (514)
Q Consensus 197 ~~~~~~m~~~d~~~~~~li~~~~~~g~----~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~--~~~a~~~~~~ 268 (514)
..++-.++..|+.. ..++ .+.+..+|+.+...|+..+. .....+|..+..... +..+..+++.
T Consensus 137 -------Ts~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~ 207 (297)
T PF13170_consen 137 -------TSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNA 207 (297)
T ss_pred -------cCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 01222333333322 1111 35667778888887776643 334444443333222 4477788888
Q ss_pred hHHhcCCCCCHhHHHHHHH
Q 040365 269 MTKDYGIAPSFEHYAAVAD 287 (514)
Q Consensus 269 m~~~~~~~p~~~~~~~li~ 287 (514)
+.+ .|+++...+|..+.-
T Consensus 208 l~~-~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 208 LKK-NGVKIKYMHYPTLGL 225 (297)
T ss_pred HHH-cCCccccccccHHHH
Confidence 854 488888888766543
No 252
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.64 E-value=5.4 Score=39.80 Aligned_cols=98 Identities=10% Similarity=0.135 Sum_probs=67.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCH--HHHHHHHHHHH
Q 040365 247 VAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISNMHA--GPTE--NVWLTLLSACR 322 (514)
Q Consensus 247 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~p~~--~~~~~ll~~~~ 322 (514)
..+..++-+.|+.++|++.|++|.+++...........|+..|...+.+.++..++.+... -|.. ..|++.+--.+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 3466667788999999999999987644333455677899999999999999999988752 1433 45666554444
Q ss_pred hcCCH---------------HHHHHHHHHHHhcCCCC
Q 040365 323 VHKNV---------------ELAGKVAEKIFMIDPNN 344 (514)
Q Consensus 323 ~~~~~---------------~~a~~~~~~~~~~~p~~ 344 (514)
..++. ..|.++..++.+.+|.-
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHV 379 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHV 379 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCC
Confidence 44431 23456777877777653
No 253
>PRK09687 putative lyase; Provisional
Probab=93.44 E-value=6.9 Score=36.78 Aligned_cols=235 Identities=10% Similarity=0.008 Sum_probs=103.2
Q ss_pred CCchhHHHHHHHHHHHCCCHHHHHHHHccCCCCChhHHHHHHHHHHHCCCh----hHHHHHHHHHHHCCCCCCHHHHHHH
Q 040365 73 DANVCIGSSLINMYAKCARVEDSHRLFCLLPVKDAISWNSIIAGCVQNGLF----DEGLKFFRQMLIAKIKPRHVSFSSI 148 (514)
Q Consensus 73 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~----~~A~~l~~~m~~~g~~p~~~t~~~l 148 (514)
.+|..+....+..+...|..+....+......+|...-...+.++.+.|+. .+++.++..+... .|+...-...
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A 111 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASA 111 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHH
Confidence 344445555555555555433333333323344555555555566666653 3456666655332 3455555455
Q ss_pred HHHHhccCChHH--HHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCC-ChH
Q 040365 149 MPACAHLTTLHL--GKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMDLHDIVSWTAVIMGNALHG-NAH 225 (514)
Q Consensus 149 l~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g-~~~ 225 (514)
+.+++..+.... ..+....+...-..++..+-...+.++++.|+-+....+..-+..+|...-..-+.++.+.+ ...
T Consensus 112 ~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~ 191 (280)
T PRK09687 112 INATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP 191 (280)
T ss_pred HHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH
Confidence 555544432110 11122222221123345555555666666665433333333333444433333344444432 133
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 040365 226 DAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISNM 305 (514)
Q Consensus 226 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 305 (514)
.+...+..+.. .+|...-...+.++.+.++. .+...+-...+. ++ .....+.+++..|.. +|...+..+
T Consensus 192 ~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~----~~--~~~~a~~ALg~ig~~-~a~p~L~~l 260 (280)
T PRK09687 192 DIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKK----GT--VGDLIIEAAGELGDK-TLLPVLDTL 260 (280)
T ss_pred HHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcC----Cc--hHHHHHHHHHhcCCH-hHHHHHHHH
Confidence 45555554442 34555555555566665553 333333333221 11 123445555555553 344444443
Q ss_pred C-CCCCHHHHHHHHHH
Q 040365 306 H-AGPTENVWLTLLSA 320 (514)
Q Consensus 306 ~-~~p~~~~~~~ll~~ 320 (514)
. ..||..+-...+.+
T Consensus 261 ~~~~~d~~v~~~a~~a 276 (280)
T PRK09687 261 LYKFDDNEIITKAIDK 276 (280)
T ss_pred HhhCCChhHHHHHHHH
Confidence 3 23444444433333
No 254
>PRK11906 transcriptional regulator; Provisional
Probab=93.44 E-value=8.7 Score=38.19 Aligned_cols=174 Identities=11% Similarity=0.156 Sum_probs=110.5
Q ss_pred CCHHHHHHHHHhCCCCCh---hHH--HHHHHHHHhC-----CChHHHHHHHHHHHH-cCCCCCHH-HHHHHHHHHHc---
Q 040365 191 GNIRLARCIFDKMDLHDI---VSW--TAVIMGNALH-----GNAHDAISLFEQMEK-DGVKPNSV-AFVAVLTACSH--- 255 (514)
Q Consensus 191 g~~~~A~~~~~~m~~~d~---~~~--~~li~~~~~~-----g~~~~A~~l~~~m~~-~g~~p~~~-t~~~ll~a~~~--- 255 (514)
..+..++. -...+..+. ..| ..++.|.... ...+.|+.+|.+... ..+.|+-. .|..+..++..
T Consensus 232 ~~~~~~E~-~~r~~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~ 310 (458)
T PRK11906 232 QTVHKPER-SVRLAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLAL 310 (458)
T ss_pred hhhhhhhh-hhcCCCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHH
Confidence 44444444 233334455 567 6677665542 235688889999883 33677643 33333322211
Q ss_pred ------cCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCC
Q 040365 256 ------AGLIDKAWSYFNSMTKDYGIAP-SFEHYAAVADLLGRAGKLQEAYEFISNMH-AGPT-ENVWLTLLSACRVHKN 326 (514)
Q Consensus 256 ------~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~ 326 (514)
.....+|.++-+... .+.| |......+..++.-.|+++.|..+|++.. ..|| ..+|......+.-.|+
T Consensus 311 ~g~~~~~~~~~~a~~~A~rAv---eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~ 387 (458)
T PRK11906 311 HGKSELELAAQKALELLDYVS---DITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEK 387 (458)
T ss_pred hcCCCchHHHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC
Confidence 233455666666554 4455 67777777777788888999999999874 3454 5667777777788999
Q ss_pred HHHHHHHHHHHHhcCCCCcchHH--HHHHHHHHccChhHHHHHHH
Q 040365 327 VELAGKVAEKIFMIDPNNMGAYV--ILSNTYAAARRWKDAASLRV 369 (514)
Q Consensus 327 ~~~a~~~~~~~~~~~p~~~~~~~--~l~~~~~~~g~~~~a~~~~~ 369 (514)
.++|.+.+++.++++|.....-. ..++.|... ..++|.+++-
T Consensus 388 ~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 431 (458)
T PRK11906 388 IEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHHHh
Confidence 99999999999999997544332 333455544 4566666653
No 255
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.29 E-value=6.3 Score=35.85 Aligned_cols=143 Identities=16% Similarity=0.172 Sum_probs=83.3
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHHcC-CC-CCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHH
Q 040365 208 IVSWTAVIMGNALHGNAHDAISLFEQMEKDG-VK-PNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAV 285 (514)
Q Consensus 208 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 285 (514)
+..|-.-+..-.+.|++++|.+.|+.+...- .. -...+...++.++.+.++.++|+...++..+.++-.|+.. |...
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~Y 112 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYY 112 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHH
Confidence 3344444555567788888888888877531 11 1345666677777778888888888888777766666642 3333
Q ss_pred HHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc-----------------ch
Q 040365 286 ADLLGRAGKLQEAYEFISNMH-AGPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNM-----------------GA 347 (514)
Q Consensus 286 i~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~-----------------~~ 347 (514)
+.+++ .|..+. ...|.. -...|..-|+.++..-|++. .-
T Consensus 113 lkgLs----------~~~~i~~~~rDq~-------------~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~ 169 (254)
T COG4105 113 LKGLS----------YFFQIDDVTRDQS-------------AARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGH 169 (254)
T ss_pred HHHHH----------HhccCCccccCHH-------------HHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHH
Confidence 44433 111111 001110 11223333444444444432 11
Q ss_pred HHHHHHHHHHccChhHHHHHHHHHHhC
Q 040365 348 YVILSNTYAAARRWKDAASLRVFMRNK 374 (514)
Q Consensus 348 ~~~l~~~~~~~g~~~~a~~~~~~m~~~ 374 (514)
=....+-|.+.|.|..|..-++.|.+.
T Consensus 170 Em~IaryY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 170 EMAIARYYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 235677899999999999999999876
No 256
>PRK15331 chaperone protein SicA; Provisional
Probab=92.99 E-value=1.2 Score=37.51 Aligned_cols=18 Identities=39% Similarity=0.634 Sum_probs=8.7
Q ss_pred HHCCChhHHHHHHHHHHH
Q 040365 118 VQNGLFDEGLKFFRQMLI 135 (514)
Q Consensus 118 ~~~g~~~~A~~l~~~m~~ 135 (514)
-+.|++++|..+|+-+..
T Consensus 48 y~~Gk~~eA~~~F~~L~~ 65 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCI 65 (165)
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 344555555555544443
No 257
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.80 E-value=0.62 Score=43.17 Aligned_cols=62 Identities=18% Similarity=0.191 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHh
Q 040365 312 NVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRN 373 (514)
Q Consensus 312 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 373 (514)
.++..++..+...|+.+.+...++++++.+|-+...|..|+.+|.+.|+...|...++.+.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 45566777888888899999999999999999989999999999999999999999988865
No 258
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.76 E-value=10 Score=36.85 Aligned_cols=150 Identities=12% Similarity=0.008 Sum_probs=76.8
Q ss_pred CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC--CH
Q 040365 205 LHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKP---NSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAP--SF 279 (514)
Q Consensus 205 ~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p--~~ 279 (514)
.....+|..+...+.+.|+++.|...+.++...+..+ +......-....-..|+.++|+..++...+. .+.. +.
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~ 221 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDS 221 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccc
Confidence 3345678888888888888888888888877643211 2223333344455667778888877776552 1111 11
Q ss_pred hHHHHHHHHHHhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 040365 280 EHYAAVADLLGRAGKLQEAYEF-ISNMHAGPTENVWLTLLSACRVH------KNVELAGKVAEKIFMIDPNNMGAYVILS 352 (514)
Q Consensus 280 ~~~~~li~~~~~~g~~~~A~~~-~~~m~~~p~~~~~~~ll~~~~~~------~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 352 (514)
.....+...+.. ..+..... ......+.-..++..+..-+... ++.+.+...|+.+.+..|.....|..++
T Consensus 222 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a 299 (352)
T PF02259_consen 222 ISNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWA 299 (352)
T ss_pred ccHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHH
Confidence 111111111000 00000000 00000000012233333333333 7788889999999999888777777666
Q ss_pred HHHHH
Q 040365 353 NTYAA 357 (514)
Q Consensus 353 ~~~~~ 357 (514)
..+.+
T Consensus 300 ~~~~~ 304 (352)
T PF02259_consen 300 LFNDK 304 (352)
T ss_pred HHHHH
Confidence 65543
No 259
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=92.66 E-value=13 Score=37.94 Aligned_cols=178 Identities=17% Similarity=0.154 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCh---hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC--CCHHHHHHHHH
Q 040365 177 MFIASSLLDMYAKCGNIRLARCIFDKMDLHDI---VSWTAVIMGNALHGNAHDAISLFEQMEKDGVK--PNSVAFVAVLT 251 (514)
Q Consensus 177 ~~~~~~li~~y~k~g~~~~A~~~~~~m~~~d~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p~~~t~~~ll~ 251 (514)
..+|...++.-.+.|+.+.+.-+|++...|-. .-|--.+.-....|+.+-|-.++....+--++ |....+.+.
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~-- 374 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR-- 374 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH--
Confidence 44555555555566666666666655543321 22333333333346666555555544442222 222222222
Q ss_pred HHHccCCHHHHHHHHHHhHHhcCCCCCH-hHHHHHHHHHHhcCCHHHHH---HHHHhCC-CCCCHHHHHHHHH-----HH
Q 040365 252 ACSHAGLIDKAWSYFNSMTKDYGIAPSF-EHYAAVADLLGRAGKLQEAY---EFISNMH-AGPTENVWLTLLS-----AC 321 (514)
Q Consensus 252 a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~---~~~~~m~-~~p~~~~~~~ll~-----~~ 321 (514)
-+-..|+++.|..+++.+..++ |+. ..-..-+....+.|..+.+. +++.... .+-+..+...+.- -+
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRY 451 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHH
Confidence 2455789999999999997653 643 33334456677888888887 5554432 2223222222222 24
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcc
Q 040365 322 RVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAAR 359 (514)
Q Consensus 322 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 359 (514)
...++.+.|..++.++.+..|++...|..+++.....+
T Consensus 452 ~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 452 KIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 56688999999999999999999999999988877665
No 260
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.26 E-value=5.1 Score=37.74 Aligned_cols=112 Identities=18% Similarity=0.149 Sum_probs=57.6
Q ss_pred cCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH--HHH--HHHHHHHccCCHHHH
Q 040365 190 CGNIRLARCIFDKMD---LHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSV--AFV--AVLTACSHAGLIDKA 262 (514)
Q Consensus 190 ~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~--~ll~a~~~~g~~~~a 262 (514)
.|+..+|-..++++. +.|..+|+--=.+|...|+...-...+++.... -.||.. +|. .+..++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 455555555555554 335566666666666666666666666665542 123321 222 222233445666666
Q ss_pred HHHHHHhHHhcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 040365 263 WSYFNSMTKDYGIAP-SFEHYAAVADLLGRAGKLQEAYEFISNM 305 (514)
Q Consensus 263 ~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 305 (514)
.+.-++.. .+.| |.-.-.++...+--.|++.++.+++.+-
T Consensus 195 Ek~A~ral---qiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 195 EKQADRAL---QINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHHhhc---cCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 65555432 3333 3333444555555666666666666554
No 261
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.19 E-value=5.1 Score=32.38 Aligned_cols=65 Identities=14% Similarity=0.042 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCC
Q 040365 108 ISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLGKQLHGCIIRNGF 173 (514)
Q Consensus 108 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 173 (514)
...+..+....+.|.-+.-.+++..+.+. -.|++.....+..||.+.|+..++.+++.++-+.|+
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 34455667777888888877888777653 367777777888888888888888888888877774
No 262
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=91.98 E-value=14 Score=36.57 Aligned_cols=198 Identities=17% Similarity=0.171 Sum_probs=110.3
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHHHHH-------HHHHHHHhc----CCHHHHHHHHHhCCCCChhH-
Q 040365 143 VSFSSIMPACAHLTTLHLGKQLHGCIIRNGFDDNMFIAS-------SLLDMYAKC----GNIRLARCIFDKMDLHDIVS- 210 (514)
Q Consensus 143 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~li~~y~k~----g~~~~A~~~~~~m~~~d~~~- 210 (514)
.+|..++..+.+.++...|.+.+..+.-. .|+..+.. +|.++.+.- -++.+=..+++.....|+..
T Consensus 299 ~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrq 376 (549)
T PF07079_consen 299 DRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQ 376 (549)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHH
Confidence 46777888888888888888887766543 34333222 222222210 11222233444444333321
Q ss_pred --HHHHH---HHHHhCCC-hHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHcc---CCHHHHHHHHHHhHHhcCCC
Q 040365 211 --WTAVI---MGNALHGN-AHDAISLFEQMEKDGVKPNS-----VAFVAVLTACSHA---GLIDKAWSYFNSMTKDYGIA 276 (514)
Q Consensus 211 --~~~li---~~~~~~g~-~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~a~~~~---g~~~~a~~~~~~m~~~~~~~ 276 (514)
-..|+ .-+-+.|. -++|+++++...+ +.|.. .++..+=.+|.+. ..+.+-..+-+-+ ++-|+.
T Consensus 377 QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~--ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi-~e~gl~ 453 (549)
T PF07079_consen 377 QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ--FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFI-TEVGLT 453 (549)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-HhcCCC
Confidence 11122 22445555 7888888888876 33332 2333333344332 3344444444433 455877
Q ss_pred C----CHhHHHHHHHH--HHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHH
Q 040365 277 P----SFEHYAAVADL--LGRAGKLQEAYEFISNM-HAGPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYV 349 (514)
Q Consensus 277 p----~~~~~~~li~~--~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 349 (514)
| +.+.-|.|.++ +...|++.++.-.-.-. ...|++.+|+-+.-+.....++++|-..+..+ |++..++.
T Consensus 454 ~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L----P~n~~~~d 529 (549)
T PF07079_consen 454 PITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL----PPNERMRD 529 (549)
T ss_pred cccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC----CCchhhHH
Confidence 7 34666777666 55778888876543322 34578888888888888888888888877664 44444444
No 263
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.91 E-value=3.9 Score=37.49 Aligned_cols=101 Identities=17% Similarity=0.183 Sum_probs=65.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHH
Q 040365 245 AFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAP-SFEHYAAVADLLGRAGKLQEAYEFISNM----HAGP-TENVWLTLL 318 (514)
Q Consensus 245 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll 318 (514)
-|...+..+ +.|++..|.+-|...++.|.-.+ ....+--|...+...|++++|...|..+ |..| -+...--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 465555443 55668888888888877643322 3445556777777888888877777655 2222 224555566
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 040365 319 SACRVHKNVELAGKVAEKIFMIDPNNMG 346 (514)
Q Consensus 319 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 346 (514)
......|+.++|...++++.+..|..+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 6677777777777777777777776543
No 264
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=91.66 E-value=10 Score=34.50 Aligned_cols=179 Identities=15% Similarity=0.116 Sum_probs=109.1
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCC------hhHHHHHHHHHHhCCChHHHHHHHHHHHHc-CCCCCHHHHH
Q 040365 175 DNMFIASSLLDMYAKCGNIRLARCIFDKMDLHD------IVSWTAVIMGNALHGNAHDAISLFEQMEKD-GVKPNSVAFV 247 (514)
Q Consensus 175 ~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~d------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~ 247 (514)
|-...|+.-+. -.+.|++++|.+.|+.+..+. ..+--.++-++-+.+++++|+..+++.... +-.||. -|.
T Consensus 33 p~~~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~ 110 (254)
T COG4105 33 PASELYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYA 110 (254)
T ss_pred CHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHH
Confidence 44455655443 457899999999999997432 234445666778899999999999998774 334443 344
Q ss_pred HHHHHHH---cc----CCHH---HHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHH--HH
Q 040365 248 AVLTACS---HA----GLID---KAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISNMHAGPTENV--WL 315 (514)
Q Consensus 248 ~ll~a~~---~~----g~~~---~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~--~~ 315 (514)
..|.+.+ .. .+.. +|..-|+.++.++ |+ +.-...|..-+..+. |... =.
T Consensus 111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry---Pn-------------S~Ya~dA~~~i~~~~---d~LA~~Em 171 (254)
T COG4105 111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY---PN-------------SRYAPDAKARIVKLN---DALAGHEM 171 (254)
T ss_pred HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC---CC-------------CcchhhHHHHHHHHH---HHHHHHHH
Confidence 4444443 21 1222 2333333333322 21 111112211111111 1111 12
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc---hHHHHHHHHHHccChhHHHHHHHHHHhC
Q 040365 316 TLLSACRVHKNVELAGKVAEKIFMIDPNNMG---AYVILSNTYAAARRWKDAASLRVFMRNK 374 (514)
Q Consensus 316 ~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 374 (514)
++..-|.+.|.+..|..-++++++.-|+... .+..|.++|...|..++|.+.-+-+...
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 3456688999999999999999988766554 4556778899999999999988877654
No 265
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.51 E-value=12 Score=34.87 Aligned_cols=116 Identities=13% Similarity=0.089 Sum_probs=66.2
Q ss_pred HHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCh-hHHH---HHHHHHHhCCChH
Q 040365 150 PACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMDLHDI-VSWT---AVIMGNALHGNAH 225 (514)
Q Consensus 150 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~d~-~~~~---~li~~~~~~g~~~ 225 (514)
......+++..+..++....... +-+....-.|...|...|+.+.|..++..++.... ..|- +-|..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 34567788889999888887764 33455666788899999999999999999873321 1121 1222233333322
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHh
Q 040365 226 DAISLFEQMEKDGVKP-NSVAFVAVLTACSHAGLIDKAWSYFNSM 269 (514)
Q Consensus 226 ~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m 269 (514)
+...+-++.-. .| |...-..+...+...|+.++|.+.+-.+
T Consensus 221 ~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~ 262 (304)
T COG3118 221 EIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLAL 262 (304)
T ss_pred CHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 22222222222 34 3333334444555566666665544443
No 266
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.41 E-value=4.6 Score=38.24 Aligned_cols=126 Identities=9% Similarity=0.062 Sum_probs=79.4
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHH--CC----CHHHHHHHHccCCC-------CChhHHHHHHHHHHHCCC-
Q 040365 57 VIKGKEIHGYAIRHGLDANVCIGSSLINMYAK--CA----RVEDSHRLFCLLPV-------KDAISWNSIIAGCVQNGL- 122 (514)
Q Consensus 57 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~--~g----~~~~A~~~f~~~~~-------~d~~~~~~li~~~~~~g~- 122 (514)
+++...+++.+.+.|+..+.+++-+..-.... .. .+..|..+|+.|++ ++..++.+|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45667899999999998888777664433333 22 35678888888873 355566666655 3333
Q ss_pred ---hhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCC--hHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 040365 123 ---FDEGLKFFRQMLIAKIKPRHV--SFSSIMPACAHLTT--LHLGKQLHGCIIRNGFDDNMFIASSLL 184 (514)
Q Consensus 123 ---~~~A~~l~~~m~~~g~~p~~~--t~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~li 184 (514)
.+++..+|+.+...|+..+.. ..+.++..+..... ...+.++++.+.+.|+++....|..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 355677888888877665433 23333333332222 346777888888888877776666554
No 267
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=91.40 E-value=16 Score=36.14 Aligned_cols=343 Identities=13% Similarity=0.069 Sum_probs=184.0
Q ss_pred HhcCChhHHHHHHHHHhhC--CCCC------------ChhhHHHHHHHHhCCCChHHHHHHHHHHHHhCCC----CchhH
Q 040365 17 ARNGLYEEALNIVRQMGNV--NLKP------------DSFTLSSVLPIFADYVDVIKGKEIHGYAIRHGLD----ANVCI 78 (514)
Q Consensus 17 ~~~g~~~~A~~l~~~m~~~--g~~p------------~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~----~~~~~ 78 (514)
-+.+.+..|++.|.....+ +..| |-+.=+..+..+...|.+.+|+.+++++...=++ -+..+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 3567888999888877654 3222 1112234456677899999999999888765443 68889
Q ss_pred HHHHHHHHHHCCCHHHHHHHHccCCCCChhHHHHHHHHHHHCCC-------------------------------hhHHH
Q 040365 79 GSSLINMYAKCARVEDSHRLFCLLPVKDAISWNSIIAGCVQNGL-------------------------------FDEGL 127 (514)
Q Consensus 79 ~~~li~~~~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~-------------------------------~~~A~ 127 (514)
|+.++-++++.=-++--......+ ..-|.-||..|.+.=+ ..--+
T Consensus 170 yd~~vlmlsrSYfLEl~e~~s~dl----~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~m 245 (549)
T PF07079_consen 170 YDRAVLMLSRSYFLELKESMSSDL----YPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLM 245 (549)
T ss_pred HHHHHHHHhHHHHHHHHHhccccc----ChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHH
Confidence 999888887653222211111111 1123334433332211 11111
Q ss_pred HHHHHHHHCCCCCCHHHH-HHHHHHHhccCChHHHHHHHHHHHHcCCC----CcHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 040365 128 KFFRQMLIAKIKPRHVSF-SSIMPACAHLTTLHLGKQLHGCIIRNGFD----DNMFIASSLLDMYAKCGNIRLARCIFDK 202 (514)
Q Consensus 128 ~l~~~m~~~g~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~li~~y~k~g~~~~A~~~~~~ 202 (514)
+++..-...-+.|+.... ..+...... +.+++..+-+.+....+. .=+..+..++....+.++...|.+.+.-
T Consensus 246 q~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~l 323 (549)
T PF07079_consen 246 QILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLAL 323 (549)
T ss_pred HHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 222222222234443222 222222222 444544444444333211 1134566667777778888887776665
Q ss_pred CC--CCChh-------HHHHHHHHHH----hCCChHHHHHHHHHHHHcCCCCCHHHHH-HHHH---HHHccCC-HHHHHH
Q 040365 203 MD--LHDIV-------SWTAVIMGNA----LHGNAHDAISLFEQMEKDGVKPNSVAFV-AVLT---ACSHAGL-IDKAWS 264 (514)
Q Consensus 203 m~--~~d~~-------~~~~li~~~~----~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~ll~---a~~~~g~-~~~a~~ 264 (514)
+. .|+.. +-..+-+..+ ..-+..+-+.+|.......+ |..-.. .++. -+-+.|. -+.|++
T Consensus 324 L~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~dekaln 401 (549)
T PF07079_consen 324 LKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHLWEIGQCDEKALN 401 (549)
T ss_pred HHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHhcCCccHHHHH
Confidence 43 33221 1111222222 11233444556666655433 222111 1221 2333444 788888
Q ss_pred HHHHhHHhcCCCC-CHhHHHHHHH----HHHhc---CCHH---HHHHHHHhCCCCC----CHHHHHHHHHH--HHhcCCH
Q 040365 265 YFNSMTKDYGIAP-SFEHYAAVAD----LLGRA---GKLQ---EAYEFISNMHAGP----TENVWLTLLSA--CRVHKNV 327 (514)
Q Consensus 265 ~~~~m~~~~~~~p-~~~~~~~li~----~~~~~---g~~~---~A~~~~~~m~~~p----~~~~~~~ll~~--~~~~~~~ 327 (514)
+++.+.+ +.| |.+.-+.+.. .|..+ ..+. .-+.++++....| +...-|.|..| +..+|++
T Consensus 402 LLk~il~---ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey 478 (549)
T PF07079_consen 402 LLKLILQ---FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEY 478 (549)
T ss_pred HHHHHHH---hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccH
Confidence 8887753 344 3333332221 12111 1122 2233444444332 44556666665 5789999
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHH
Q 040365 328 ELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFM 371 (514)
Q Consensus 328 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 371 (514)
.++...-.-+.+..| ++.+|..++-......++++|..++..+
T Consensus 479 ~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 479 HKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 999999999999999 7899999999999999999999999865
No 268
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=91.34 E-value=6.5 Score=32.38 Aligned_cols=57 Identities=18% Similarity=0.191 Sum_probs=35.6
Q ss_pred HHhcCCHHHHHHHHHhCCCC----C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 040365 289 LGRAGKLQEAYEFISNMHAG----P-TENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNM 345 (514)
Q Consensus 289 ~~~~g~~~~A~~~~~~m~~~----p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 345 (514)
..+.|++++|.+.|+.+..+ | ....--.|+.++.+.+++++|...+++.+++.|.++
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 34556666666666665311 1 223445566777777777777777777777776654
No 269
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.90 E-value=13 Score=39.54 Aligned_cols=141 Identities=16% Similarity=0.059 Sum_probs=67.2
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 040365 184 LDMYAKCGNIRLARCIFDKMDLHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAW 263 (514)
Q Consensus 184 i~~y~k~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 263 (514)
.+-+.+.|++++|...|-+-...-.. ..+|.-|....+..+-..+++.+.+.|+.- ...-..|+.+|.+.++.+.-.
T Consensus 375 gd~Ly~Kgdf~~A~~qYI~tI~~le~--s~Vi~kfLdaq~IknLt~YLe~L~~~gla~-~dhttlLLncYiKlkd~~kL~ 451 (933)
T KOG2114|consen 375 GDYLYGKGDFDEATDQYIETIGFLEP--SEVIKKFLDAQRIKNLTSYLEALHKKGLAN-SDHTTLLLNCYIKLKDVEKLT 451 (933)
T ss_pred HHHHHhcCCHHHHHHHHHHHcccCCh--HHHHHHhcCHHHHHHHHHHHHHHHHccccc-chhHHHHHHHHHHhcchHHHH
Confidence 33444566666666555443211111 123444445555555556666666666542 222234666666666666655
Q ss_pred HHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040365 264 SYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISNMHAGPTENVWLTLLSACRVHKNVELAGKVAEK 336 (514)
Q Consensus 264 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 336 (514)
++.+.-. + |.- ..-....+..+.+.+-+++|.-+-..... +...... .+...+++++|.+.++.
T Consensus 452 efI~~~~-~-g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~--he~vl~i---lle~~~ny~eAl~yi~s 515 (933)
T KOG2114|consen 452 EFISKCD-K-GEW--FFDVETALEILRKSNYLDEAELLATKFKK--HEWVLDI---LLEDLHNYEEALRYISS 515 (933)
T ss_pred HHHhcCC-C-cce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc--CHHHHHH---HHHHhcCHHHHHHHHhc
Confidence 5554331 1 111 11123345555566666666655554432 1222222 23345566666665554
No 270
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.89 E-value=2.1 Score=39.77 Aligned_cols=76 Identities=14% Similarity=0.212 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHH-----cCCCCCHHHHHH
Q 040365 177 MFIASSLLDMYAKCGNIRLARCIFDKMD---LHDIVSWTAVIMGNALHGNAHDAISLFEQMEK-----DGVKPNSVAFVA 248 (514)
Q Consensus 177 ~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~~ 248 (514)
..++..++..+..+|+.+.+.+.++++. .-|...|..++.+|.+.|+...|+..|+++.. .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 3466778888999999999888888775 34677899999999999999999999888765 466776655544
Q ss_pred HHHH
Q 040365 249 VLTA 252 (514)
Q Consensus 249 ll~a 252 (514)
...+
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4433
No 271
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=90.88 E-value=11 Score=33.38 Aligned_cols=161 Identities=14% Similarity=0.088 Sum_probs=90.0
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHH
Q 040365 208 IVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPN-SVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVA 286 (514)
Q Consensus 208 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 286 (514)
...||-+.--+...|+++.|.+.|+...+. .|. ..+...-.-++.-.|++..|.+-|...-..-.-.|-...|--++
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~ 176 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN 176 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH
Confidence 456777777777888888888888887764 332 22222222234456777777766655533312222222332222
Q ss_pred HHHHhcCCHHHHHH-HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------cchHHHHHHHHHHc
Q 040365 287 DLLGRAGKLQEAYE-FISNMHAGPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNN-------MGAYVILSNTYAAA 358 (514)
Q Consensus 287 ~~~~~~g~~~~A~~-~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~ 358 (514)
. +.-++.+|.. +.++.. +.|..-|..-|-.+--..-.+ +.+++++.....++ ..+|.-|..-|...
T Consensus 177 E---~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~ 250 (297)
T COG4785 177 E---QKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYLGKISE--ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSL 250 (297)
T ss_pred H---hhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHHhhccH--HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcc
Confidence 1 2334555554 333332 445556665554443222111 22333433322222 35888999999999
Q ss_pred cChhHHHHHHHHHHhCCC
Q 040365 359 RRWKDAASLRVFMRNKGM 376 (514)
Q Consensus 359 g~~~~a~~~~~~m~~~g~ 376 (514)
|+.++|..+|+......+
T Consensus 251 G~~~~A~~LfKLaiannV 268 (297)
T COG4785 251 GDLDEATALFKLAVANNV 268 (297)
T ss_pred ccHHHHHHHHHHHHHHhH
Confidence 999999999998776554
No 272
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.84 E-value=12 Score=33.78 Aligned_cols=201 Identities=13% Similarity=0.084 Sum_probs=93.4
Q ss_pred hHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHCCCHHHHHHHHccCCCCC--hhHHHHHHHHHHHC
Q 040365 43 TLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSSLINMYAKCARVEDSHRLFCLLPVKD--AISWNSIIAGCVQN 120 (514)
Q Consensus 43 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~d--~~~~~~li~~~~~~ 120 (514)
.|.-...+|....++++|+..+..+.+. .+.+...|.+ ...++.|-.+..++..-+ +..|+--...|.++
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~klsEvvdl~eKAs~lY~E~ 104 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC 104 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 3555556666777777777766655532 2333332221 223344444444444322 22355566667777
Q ss_pred CChhHHHHHHHHHHH--CCCCCCHH--HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHH
Q 040365 121 GLFDEGLKFFRQMLI--AKIKPRHV--SFSSIMPACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLA 196 (514)
Q Consensus 121 g~~~~A~~l~~~m~~--~g~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A 196 (514)
|.++-|-..+++.-+ +++.|+.. .|.-.+...-..++...+.++ +..+-..|.+...+++|
T Consensus 105 GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el---------------~gk~sr~lVrl~kf~Ea 169 (308)
T KOG1585|consen 105 GSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFEL---------------YGKCSRVLVRLEKFTEA 169 (308)
T ss_pred CCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHH---------------HHHhhhHhhhhHHhhHH
Confidence 776666555554422 22344321 122222222222222222222 22233344455555555
Q ss_pred HHHHHhCCC--------CCh-hHHHHHHHHHHhCCChHHHHHHHHHHHHcC--CCC-CHHHHHHHHHHHHccCCHHHHHH
Q 040365 197 RCIFDKMDL--------HDI-VSWTAVIMGNALHGNAHDAISLFEQMEKDG--VKP-NSVAFVAVLTACSHAGLIDKAWS 264 (514)
Q Consensus 197 ~~~~~~m~~--------~d~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p-~~~t~~~ll~a~~~~g~~~~a~~ 264 (514)
-..|.+-.. ++. ..+-+.|-.|.-..++..|...+++--+.+ ..| +..+...||.+| ..|+.++...
T Consensus 170 a~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~k 248 (308)
T KOG1585|consen 170 ATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKK 248 (308)
T ss_pred HHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHH
Confidence 444433220 111 123344444555566777777776644322 122 345666666665 4466666666
Q ss_pred HHH
Q 040365 265 YFN 267 (514)
Q Consensus 265 ~~~ 267 (514)
++.
T Consensus 249 vl~ 251 (308)
T KOG1585|consen 249 VLS 251 (308)
T ss_pred HHc
Confidence 544
No 273
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=90.79 E-value=3.2 Score=33.40 Aligned_cols=87 Identities=10% Similarity=-0.092 Sum_probs=50.4
Q ss_pred HHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHCCCHHHHHHHHccCCC----CChh---HHHHHHHHHHHCCC
Q 040365 50 IFADYVDVIKGKEIHGYAIRHGLDANVCIGSSLINMYAKCARVEDSHRLFCLLPV----KDAI---SWNSIIAGCVQNGL 122 (514)
Q Consensus 50 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~----~d~~---~~~~li~~~~~~g~ 122 (514)
+.+..|+++.|++.|.+.+..- +....+||.-..+|--.|+.++|+.-+++..+ +.-. +|---...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4556667777777777666553 45566667666666666766666665554431 1111 12222334556677
Q ss_pred hhHHHHHHHHHHHCC
Q 040365 123 FDEGLKFFRQMLIAK 137 (514)
Q Consensus 123 ~~~A~~l~~~m~~~g 137 (514)
-+.|..=|....+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 777777676665554
No 274
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.64 E-value=9.8 Score=32.41 Aligned_cols=134 Identities=12% Similarity=0.120 Sum_probs=83.6
Q ss_pred HHHHHHHhhCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCc-hhHHHHHHHHHHHC-CCHHHHHHHHccCC
Q 040365 26 LNIVRQMGNVNLKPDSFTLSSVLPIFADYVDVIKGKEIHGYAIRHGLDAN-VCIGSSLINMYAKC-ARVEDSHRLFCLLP 103 (514)
Q Consensus 26 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~-g~~~~A~~~f~~~~ 103 (514)
++.++.+.+.+++|+...+..++..+.+.|.+..-.+ ++..++-+| ..+...|++.-.+. .-..-|..++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 4566677778999999999999999999998765443 444454444 44444444332211 01334555555554
Q ss_pred CCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc
Q 040365 104 VKDAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLGKQLHGCIIRN 171 (514)
Q Consensus 104 ~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 171 (514)
..+..++..+...|++-+|+++.+..... +......++.+..+.++...-..++....+.
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34667788899999999999988775322 2222344566666666666555555555443
No 275
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.48 E-value=3.5 Score=34.98 Aligned_cols=48 Identities=15% Similarity=0.104 Sum_probs=21.5
Q ss_pred hcCCHHHHHHHHHhCCCC-C---hhHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 040365 189 KCGNIRLARCIFDKMDLH-D---IVSWTAVIMGNALHGNAHDAISLFEQMEK 236 (514)
Q Consensus 189 k~g~~~~A~~~~~~m~~~-d---~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 236 (514)
..|.+++.....+-+..+ + ...-.+|.-+-.+.|++.+|...|.++..
T Consensus 144 D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 144 DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 345555544444444311 1 12233343444455555555555555544
No 276
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.39 E-value=0.59 Score=27.48 Aligned_cols=31 Identities=19% Similarity=0.190 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 040365 313 VWLTLLSACRVHKNVELAGKVAEKIFMIDPN 343 (514)
Q Consensus 313 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 343 (514)
+|..+...+...|++++|...|++.++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5666777777777777777777777777663
No 277
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=90.31 E-value=12 Score=32.83 Aligned_cols=197 Identities=17% Similarity=0.107 Sum_probs=116.8
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHc-CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCC--CC-hhHHHHHHH-H
Q 040365 143 VSFSSIMPACAHLTTLHLGKQLHGCIIRN-GFDDNMFIASSLLDMYAKCGNIRLARCIFDKMDL--HD-IVSWTAVIM-G 217 (514)
Q Consensus 143 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~--~d-~~~~~~li~-~ 217 (514)
..+......+...+.+..+...+...... ........+..+...+...+++..+.+.+..... ++ ......... .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 34444444444555555555444444431 2233344444555555555666666666665542 11 122222233 5
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHhc
Q 040365 218 NALHGNAHDAISLFEQMEKDGVKP----NSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAP-SFEHYAAVADLLGRA 292 (514)
Q Consensus 218 ~~~~g~~~~A~~l~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~ 292 (514)
+...|+++.|...|.+... ..| ....+......+...++.+.+...+....+. ... ....+..+...+...
T Consensus 140 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 140 LYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHc
Confidence 7777888888888887754 233 2333444444466778888888888877542 222 356677777788888
Q ss_pred CCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 040365 293 GKLQEAYEFISNMH-AGPT-ENVWLTLLSACRVHKNVELAGKVAEKIFMIDPN 343 (514)
Q Consensus 293 g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 343 (514)
+.+++|...+.... ..|+ ...+..+...+...+..+.+...+.+.....|.
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 88888888887764 2343 445555555555667788888888888888775
No 278
>PRK11619 lytic murein transglycosylase; Provisional
Probab=90.06 E-value=29 Score=36.95 Aligned_cols=80 Identities=9% Similarity=-0.012 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHHCCCHHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 040365 77 CIGSSLINMYAKCARVEDSHRLFCLLPVKDAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLT 156 (514)
Q Consensus 77 ~~~~~li~~~~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~ 156 (514)
..-...+..+++.+++....+.+.. +..+...-.....+....|+.++|....+.+=..| ...+.....++..+.+.|
T Consensus 100 ~Lr~~~l~~La~~~~w~~~~~~~~~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g 177 (644)
T PRK11619 100 SLQSRFVNELARREDWRGLLAFSPE-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSG 177 (644)
T ss_pred HHHHHHHHHHHHccCHHHHHHhcCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcC
Confidence 3444455566777888888873333 23455555667777888888887877777765554 334556666666666555
Q ss_pred Ch
Q 040365 157 TL 158 (514)
Q Consensus 157 ~~ 158 (514)
.+
T Consensus 178 ~l 179 (644)
T PRK11619 178 KQ 179 (644)
T ss_pred CC
Confidence 43
No 279
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.87 E-value=0.56 Score=28.25 Aligned_cols=26 Identities=15% Similarity=0.072 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHccChhHHHHHHHHHH
Q 040365 347 AYVILSNTYAAARRWKDAASLRVFMR 372 (514)
Q Consensus 347 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 372 (514)
+|..|..+|.+.|+|++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788999999999999999998843
No 280
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=89.72 E-value=26 Score=35.80 Aligned_cols=160 Identities=9% Similarity=0.004 Sum_probs=69.8
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhCCCCch------hHHHHHHHHHHH----CCCHHHHHHHHccCCC--CChhHHH
Q 040365 44 LSSVLPIFADYVDVIKGKEIHGYAIRHGLDANV------CIGSSLINMYAK----CARVEDSHRLFCLLPV--KDAISWN 111 (514)
Q Consensus 44 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~------~~~~~li~~~~~----~g~~~~A~~~f~~~~~--~d~~~~~ 111 (514)
+..++...+-.||.+.+.+.+....+.+--..+ ..|...+..+.. ..+.+.|.++++.+.. |+...|.
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl 270 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFL 270 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHH
Confidence 344555555555666666555555443211111 112222222221 3345556666655543 4444443
Q ss_pred HH-HHHHHHCCChhHHHHHHHHHHHCC---CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHHHHH-HHHHH
Q 040365 112 SI-IAGCVQNGLFDEGLKFFRQMLIAK---IKPRHVSFSSIMPACAHLTTLHLGKQLHGCIIRNGFDDNMFIAS-SLLDM 186 (514)
Q Consensus 112 ~l-i~~~~~~g~~~~A~~l~~~m~~~g---~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~ 186 (514)
.. .+.+...|++++|++.|++..... -+.....+--+.-.+.-..++++|...+..+.+.. .....+|. ....+
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHH
Confidence 32 233444556666666665443211 01111222233334455556666666666655543 11222222 22333
Q ss_pred HHhcCCH-------HHHHHHHHhCC
Q 040365 187 YAKCGNI-------RLARCIFDKMD 204 (514)
Q Consensus 187 y~k~g~~-------~~A~~~~~~m~ 204 (514)
|...|+. ++|.++|.+++
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHH
Confidence 4445555 55666665553
No 281
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.59 E-value=0.65 Score=27.96 Aligned_cols=28 Identities=18% Similarity=0.063 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 040365 313 VWLTLLSACRVHKNVELAGKVAEKIFMI 340 (514)
Q Consensus 313 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 340 (514)
+|..|...|...|++++|+.++++.+.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4677788888888888888888885543
No 282
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.33 E-value=2 Score=36.06 Aligned_cols=53 Identities=11% Similarity=0.068 Sum_probs=28.8
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHhC
Q 040365 322 RVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRNK 374 (514)
Q Consensus 322 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 374 (514)
...++.+.++.++..+.-+.|..+..-..-...+...|+|.+|.++++.+.+.
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 34445555555555555555555555555555555555555555555555443
No 283
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.27 E-value=7.6 Score=39.63 Aligned_cols=148 Identities=18% Similarity=0.105 Sum_probs=103.2
Q ss_pred hcCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHH
Q 040365 189 KCGNIRLARCIFDKMDLHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSV-AFVAVLTACSHAGLIDKAWSYFN 267 (514)
Q Consensus 189 k~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~ 267 (514)
-.|+++.|..++..++++ .-+.++.-+.+.|..++|+++ .||.. -|.. ..+.|+++.|.++..
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~rFel----al~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQRFEL----ALKLGRLDIAFDLAV 661 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhhhhhh----hhhcCcHHHHHHHHH
Confidence 357788887777766633 334455556667777777653 33332 2322 346789999988776
Q ss_pred HhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch
Q 040365 268 SMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISNMHAGPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGA 347 (514)
Q Consensus 268 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 347 (514)
+. -+..-|..|.++....|++..|.+.|.... -|..|+-.+...|+.+....+.....+.+..|
T Consensus 662 e~-------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N--- 725 (794)
T KOG0276|consen 662 EA-------NSEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNN--- 725 (794)
T ss_pred hh-------cchHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccc---
Confidence 54 256678999999999999999999987754 26778888888888776666666666655544
Q ss_pred HHHHHHHHHHccChhHHHHHHHH
Q 040365 348 YVILSNTYAAARRWKDAASLRVF 370 (514)
Q Consensus 348 ~~~l~~~~~~~g~~~~a~~~~~~ 370 (514)
....+|...|+++++.+++..
T Consensus 726 --~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 726 --LAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred --hHHHHHHHcCCHHHHHHHHHh
Confidence 344567889999999888764
No 284
>PRK09687 putative lyase; Provisional
Probab=89.15 E-value=20 Score=33.72 Aligned_cols=231 Identities=11% Similarity=-0.022 Sum_probs=131.4
Q ss_pred CCChhhHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHCCCH----HHHHHHHccC--CCCChhHHH
Q 040365 38 KPDSFTLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSSLINMYAKCARV----EDSHRLFCLL--PVKDAISWN 111 (514)
Q Consensus 38 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~----~~A~~~f~~~--~~~d~~~~~ 111 (514)
.+|.......+.++...|..+-... ...+.+ .+|..+-...+.+++..|+- +++...+..+ .++|...-.
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~-l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~VR~ 109 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRL-AIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSACVRA 109 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHH-HHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCHHHHH
Confidence 3566666667777777665432222 222322 45666777777777777763 4566666654 356655555
Q ss_pred HHHHHHHHCCCh-----hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 040365 112 SIIAGCVQNGLF-----DEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDM 186 (514)
Q Consensus 112 ~li~~~~~~g~~-----~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 186 (514)
..+.++...+.. .++...+..... .++...-...+.++++.++ +.+...+-.+++ .+|..+-..-+.+
T Consensus 110 ~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~a 182 (280)
T PRK09687 110 SAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFA 182 (280)
T ss_pred HHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHH
Confidence 555555554321 233444433333 2355555566777777776 345555555554 3444555556666
Q ss_pred HHhcC-CHHHHHHHH-HhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 040365 187 YAKCG-NIRLARCIF-DKMDLHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWS 264 (514)
Q Consensus 187 y~k~g-~~~~A~~~~-~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 264 (514)
+++.+ +-..+...+ ..+..+|...-..-+.++.+.|+ ..|+..+-+..+.+ + ....++.++...|.. +|..
T Consensus 183 Lg~~~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p 255 (280)
T PRK09687 183 LNSNKYDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLP 255 (280)
T ss_pred HhcCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHH
Confidence 66543 123444443 34446677777777778888777 45666666665542 2 234677778888885 6777
Q ss_pred HHHHhHHhcCCCCCHhHHHHHHHHH
Q 040365 265 YFNSMTKDYGIAPSFEHYAAVADLL 289 (514)
Q Consensus 265 ~~~~m~~~~~~~p~~~~~~~li~~~ 289 (514)
.+..+... .||...-...+.++
T Consensus 256 ~L~~l~~~---~~d~~v~~~a~~a~ 277 (280)
T PRK09687 256 VLDTLLYK---FDDNEIITKAIDKL 277 (280)
T ss_pred HHHHHHhh---CCChhHHHHHHHHH
Confidence 77777543 45665555555544
No 285
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.02 E-value=12 Score=32.34 Aligned_cols=57 Identities=21% Similarity=0.184 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCCCC------hhHHHHHHHHHHhCCChHHHHHHHHHHH
Q 040365 179 IASSLLDMYAKCGNIRLARCIFDKMDLHD------IVSWTAVIMGNALHGNAHDAISLFEQME 235 (514)
Q Consensus 179 ~~~~li~~y~k~g~~~~A~~~~~~m~~~d------~~~~~~li~~~~~~g~~~~A~~l~~~m~ 235 (514)
.+..+.+.|.+.|+++.|.+.|.++.+.. +..+-.+|......|++..+.....+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 44556666666666666666666654332 1234444555555555555555555443
No 286
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=88.61 E-value=9.2 Score=29.19 Aligned_cols=87 Identities=13% Similarity=0.098 Sum_probs=58.9
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHCCCHHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHC
Q 040365 57 VIKGKEIHGYAIRHGLDANVCIGSSLINMYAKCARVEDSHRLFCLLPVKDAISWNSIIAGCVQNGLFDEGLKFFRQMLIA 136 (514)
Q Consensus 57 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 136 (514)
.++|.-+-+.+...+-. ...+--.-+..+...|++++|..+.+.+..||...|-+|-.. +.|..+++..-+.+|...
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhC
Confidence 45666666665544311 222222333456778999999999999999999999887654 677777777777788777
Q ss_pred CCCCCHHHHHH
Q 040365 137 KIKPRHVSFSS 147 (514)
Q Consensus 137 g~~p~~~t~~~ 147 (514)
| .|...+|..
T Consensus 98 g-~p~lq~Faa 107 (115)
T TIGR02508 98 G-DPRLQTFVA 107 (115)
T ss_pred C-CHHHHHHHH
Confidence 6 565555543
No 287
>PRK12798 chemotaxis protein; Reviewed
Probab=88.31 E-value=27 Score=34.29 Aligned_cols=182 Identities=18% Similarity=0.214 Sum_probs=118.9
Q ss_pred cCCHHHHHHHHHhCCC----CChhHHHHHHHHH-HhCCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHccCCHH
Q 040365 190 CGNIRLARCIFDKMDL----HDIVSWTAVIMGN-ALHGNAHDAISLFEQMEKDGVKPNS----VAFVAVLTACSHAGLID 260 (514)
Q Consensus 190 ~g~~~~A~~~~~~m~~----~d~~~~~~li~~~-~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~ 260 (514)
.|+.++|.+.+..+.. +.+..+-+|+.+- ....++.+|+++|++..-. -|-. ....--+....+.|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 6888888888888863 3455677777664 4466899999999987763 4433 33444555678899999
Q ss_pred HHHHHHHHhHHhcCCCCCHhHHH-HHHHHHHh---cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040365 261 KAWSYFNSMTKDYGIAPSFEHYA-AVADLLGR---AGKLQEAYEFISNMHAGPTENVWLTLLSACRVHKNVELAGKVAEK 336 (514)
Q Consensus 261 ~a~~~~~~m~~~~~~~p~~~~~~-~li~~~~~---~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 336 (514)
++..+-.....+|.-.|-...|. .++..+.+ .-..+.-..++..|...--..+|..+...-...|+.+.|....++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 98877777667666677443333 23333333 334555666777775333456888899999999999999999999
Q ss_pred HHhcCCCCcchHHHHHHHHHH-----ccChhHHHHHHHHHHhC
Q 040365 337 IFMIDPNNMGAYVILSNTYAA-----ARRWKDAASLRVFMRNK 374 (514)
Q Consensus 337 ~~~~~p~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~m~~~ 374 (514)
+..+... ...-...+..|.. ..+.+++.+.+..+...
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~ 324 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEELSQIDRD 324 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcCChh
Confidence 9987632 2222333333332 23466666666655443
No 288
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.25 E-value=3.4 Score=34.14 Aligned_cols=53 Identities=11% Similarity=0.026 Sum_probs=36.3
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHhCC
Q 040365 323 VHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRNKG 375 (514)
Q Consensus 323 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 375 (514)
..++.+.++.++..+.-+.|..+..-..-...+...|+|++|.++++...+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 36666777777777777777766666666666677777777777777766654
No 289
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.15 E-value=39 Score=35.88 Aligned_cols=90 Identities=16% Similarity=0.360 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHH
Q 040365 225 HDAISLFEQMEKDGVKP-----NSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAY 299 (514)
Q Consensus 225 ~~A~~l~~~m~~~g~~p-----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 299 (514)
+..+++|.+.-...+-| ........+..|.+.|-+++-.-++.+| | .++.+|.-.--+.+++++|.
T Consensus 611 dk~I~LYAEyDrk~LLPFLr~s~~Y~lekA~eiC~q~~~~~E~VYlLgrm----G-----n~k~AL~lII~el~die~AI 681 (846)
T KOG2066|consen 611 DKQIELYAEYDRKKLLPFLRKSQNYNLEKALEICSQKNFYEELVYLLGRM----G-----NAKEALKLIINELRDIEKAI 681 (846)
T ss_pred hHHHHHHHHHhHhhhhHHHHhcCCCCHHHHHHHHHhhCcHHHHHHHHHhh----c-----chHHHHHHHHHHhhCHHHHH
Confidence 45566666654443333 1223445566677777777766666666 2 23444444445566777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 040365 300 EFISNMHAGPTENVWLTLLSACRVHKN 326 (514)
Q Consensus 300 ~~~~~m~~~p~~~~~~~ll~~~~~~~~ 326 (514)
++.++- .|...|..||.-+...-.
T Consensus 682 efvKeq---~D~eLWe~LI~~~ldkPe 705 (846)
T KOG2066|consen 682 EFVKEQ---DDSELWEDLINYSLDKPE 705 (846)
T ss_pred HHHHhc---CCHHHHHHHHHHhhcCcH
Confidence 776553 478888888877665543
No 290
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=88.09 E-value=9 Score=29.23 Aligned_cols=87 Identities=17% Similarity=0.180 Sum_probs=59.7
Q ss_pred hHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 040365 158 LHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMDLHDIVSWTAVIMGNALHGNAHDAISLFEQMEKD 237 (514)
Q Consensus 158 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 237 (514)
.++|..|-+.+...+-. ...+.-.-+..+...|++++|..+.+.+..||+..|-++-. .+.|..+++..-+.+|..+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 46666666666554421 23333333556778899999999999999999999988755 4667777777777788777
Q ss_pred CCCCCHHHHHH
Q 040365 238 GVKPNSVAFVA 248 (514)
Q Consensus 238 g~~p~~~t~~~ 248 (514)
| .|...+|..
T Consensus 98 g-~p~lq~Faa 107 (115)
T TIGR02508 98 G-DPRLQTFVA 107 (115)
T ss_pred C-CHHHHHHHH
Confidence 6 555555543
No 291
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=87.93 E-value=7.6 Score=33.64 Aligned_cols=61 Identities=15% Similarity=0.043 Sum_probs=33.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCh--hhHHHHHHHHhCCCChHHHHHHHHHHH
Q 040365 8 SWNTVIVGLARNGLYEEALNIVRQMGNVNLKPDS--FTLSSVLPIFADYVDVIKGKEIHGYAI 68 (514)
Q Consensus 8 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~ 68 (514)
.|..+...|.+.|+.+.|++.|.++......|.. ..+-.++..+...+++..+.....++.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4555666666666666666666666654333332 234445555555566665555554443
No 292
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=87.91 E-value=24 Score=33.14 Aligned_cols=16 Identities=25% Similarity=-0.080 Sum_probs=9.2
Q ss_pred HHhcCCHHHHHHHHHH
Q 040365 321 CRVHKNVELAGKVAEK 336 (514)
Q Consensus 321 ~~~~~~~~~a~~~~~~ 336 (514)
+.+.++++.|...++-
T Consensus 256 ~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHhhcCHHHHHHHHHH
Confidence 4455566666666553
No 293
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=87.87 E-value=1.9 Score=27.25 Aligned_cols=28 Identities=21% Similarity=0.344 Sum_probs=16.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 040365 8 SWNTVIVGLARNGLYEEALNIVRQMGNV 35 (514)
Q Consensus 8 ~~~~li~~~~~~g~~~~A~~l~~~m~~~ 35 (514)
+|..+...|.+.|++++|.++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3555555666666666666666666554
No 294
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=87.63 E-value=0.84 Score=27.13 Aligned_cols=31 Identities=23% Similarity=0.197 Sum_probs=19.3
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHHCCCHHHHH
Q 040365 65 GYAIRHGLDANVCIGSSLINMYAKCARVEDSH 96 (514)
Q Consensus 65 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 96 (514)
.++++.. |.+..+|+.|...|...|++++|+
T Consensus 3 ~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3444443 556666777777777777777664
No 295
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.40 E-value=5.5 Score=37.20 Aligned_cols=98 Identities=15% Similarity=0.227 Sum_probs=72.3
Q ss_pred cCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCC-C--------ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q 040365 171 NGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMDL-H--------DIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKP 241 (514)
Q Consensus 171 ~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~-~--------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 241 (514)
.|.+....+...+++.-....+++++...+-++.. + ..++|-.++. .=++++++.++..=.+.|+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhcccc
Confidence 34455555666667666667788888888777652 2 2344444433 336779999988888999999
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHhHHh
Q 040365 242 NSVAFVAVLTACSHAGLIDKAWSYFNSMTKD 272 (514)
Q Consensus 242 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 272 (514)
|..|+..+++.+.+.+++.+|.++.-.|..+
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999999998887777554
No 296
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=87.27 E-value=5 Score=30.34 Aligned_cols=63 Identities=14% Similarity=0.197 Sum_probs=48.4
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHH
Q 040365 223 NAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVAD 287 (514)
Q Consensus 223 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 287 (514)
+.-++.+-++.+....+-|+.....+.|.||.+.+++..|.++|+....+.| .+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 4556677777777778899999999999999999999999999998854433 24456666654
No 297
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=87.15 E-value=2.9 Score=36.30 Aligned_cols=87 Identities=15% Similarity=0.108 Sum_probs=66.8
Q ss_pred HHhcCCHHHHHHHHHhCC-CCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCh
Q 040365 289 LGRAGKLQEAYEFISNMH-AGP------TENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRW 361 (514)
Q Consensus 289 ~~~~g~~~~A~~~~~~m~-~~p------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 361 (514)
+.+.|++++|..-|.+.. .-| -.+.|..-..+..+.+..+.|+.-..+.++++|....+...-+.+|.+..++
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 556777777777666542 111 1244555566788899999999999999999998777777778899999999
Q ss_pred hHHHHHHHHHHhCC
Q 040365 362 KDAASLRVFMRNKG 375 (514)
Q Consensus 362 ~~a~~~~~~m~~~g 375 (514)
++|+.=++++.+..
T Consensus 185 eealeDyKki~E~d 198 (271)
T KOG4234|consen 185 EEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999987754
No 298
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=87.10 E-value=45 Score=35.43 Aligned_cols=69 Identities=25% Similarity=0.258 Sum_probs=43.3
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCC-------hHHHHHHHHHHHHhCCCCchh
Q 040365 7 VSWNTVIVGLARNGLYEEALNIVRQMGNVNLKPDSFTLSSVLPIFADYVD-------VIKGKEIHGYAIRHGLDANVC 77 (514)
Q Consensus 7 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~-------~~~a~~~~~~~~~~g~~~~~~ 77 (514)
..| ++|--+.|.|++++|.++....... .......|...+..+....+ -++...-+.+..+.....|++
T Consensus 113 p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 113 PIW-ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp EHH-HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred ccH-HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 345 4788899999999999999666543 45666778888998877533 234445555555543322443
No 299
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=86.93 E-value=11 Score=39.42 Aligned_cols=186 Identities=16% Similarity=0.242 Sum_probs=111.0
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHH----------HHHHHHHHHhccCChHHHHHHHHHHHHc-C-CCC
Q 040365 108 ISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHV----------SFSSIMPACAHLTTLHLGKQLHGCIIRN-G-FDD 175 (514)
Q Consensus 108 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----------t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~-~~~ 175 (514)
.+-..|+-.|....+++..+++.+.++.- ||.. .|...++---+-|+-++|..+.--+++. | +.|
T Consensus 202 d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 202 DTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred HHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 34556777788888899999998888763 4332 2333333334456777777766655543 3 344
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHH---HHHHHHH
Q 040365 176 NMFIASSLLDMYAKCGNIRLARCIFDKMDLHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVA---FVAVLTA 252 (514)
Q Consensus 176 ~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t---~~~ll~a 252 (514)
| +||-||++ |..|- +-+.|...+..+.|.+.|++.-+ +.|+..+ +..|+.+
T Consensus 279 D---------m~Cl~GRI------YKDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~a 332 (1226)
T KOG4279|consen 279 D---------MYCLCGRI------YKDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRA 332 (1226)
T ss_pred c---------eeeeechh------hhhhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHH
Confidence 4 67777763 33332 11234445566778888887766 5676543 4444433
Q ss_pred HHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 040365 253 CSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISNMHAGPTENVWLTLLSACRVHKNVELAGK 332 (514)
Q Consensus 253 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~ 332 (514)
-.+ .++...+ +. ..--.|-..++|.|.++...++++-. ..+.+-.-.+|+..|.+
T Consensus 333 aG~--~Fens~E----lq---------~IgmkLn~LlgrKG~leklq~YWdV~----------~y~~asVLAnd~~kaiq 387 (1226)
T KOG4279|consen 333 AGE--HFENSLE----LQ---------QIGMKLNSLLGRKGALEKLQEYWDVA----------TYFEASVLANDYQKAIQ 387 (1226)
T ss_pred hhh--hccchHH----HH---------HHHHHHHHHhhccchHHHHHHHHhHH----------HhhhhhhhccCHHHHHH
Confidence 221 1111111 10 11123445678999998888777532 23455666789999999
Q ss_pred HHHHHHhcCCCCcch
Q 040365 333 VAEKIFMIDPNNMGA 347 (514)
Q Consensus 333 ~~~~~~~~~p~~~~~ 347 (514)
+.+.|.++.|+....
T Consensus 388 Aae~mfKLk~P~WYL 402 (1226)
T KOG4279|consen 388 AAEMMFKLKPPVWYL 402 (1226)
T ss_pred HHHHHhccCCceehH
Confidence 999999999876433
No 300
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=86.85 E-value=31 Score=33.38 Aligned_cols=69 Identities=14% Similarity=0.181 Sum_probs=56.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----CCcchHHHHHHHHHHccChhHHHHHHHHHHhCCCc
Q 040365 309 PTENVWLTLLSACRVHKNVELAGKVAEKIFMIDP----NNMGAYVILSNTYAAARRWKDAASLRVFMRNKGMK 377 (514)
Q Consensus 309 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 377 (514)
....+|..+...+++.|+++.|...+.++...++ ..+.....-+......|+.++|...++...+..+.
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~ 216 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLS 216 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Confidence 4557899999999999999999999999988652 24566677788899999999999999888774333
No 301
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.73 E-value=5.7 Score=37.11 Aligned_cols=99 Identities=11% Similarity=0.136 Sum_probs=69.4
Q ss_pred hCCCCchhHHHHHHHHHHHCCCHHHHHHHHccCCC-C--------ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCC
Q 040365 70 HGLDANVCIGSSLINMYAKCARVEDSHRLFCLLPV-K--------DAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKP 140 (514)
Q Consensus 70 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~-~--------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 140 (514)
.|.+....+...++..-....+++++...+-.+.. | ...+| ++.+. .-++++++.++..=.+.|+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~---irlll-ky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTW---IRLLL-KYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHH---HHHHH-ccChHHHHHHHhCcchhcccc
Confidence 34455555666677666667778888877766542 2 22233 33322 336778888888888889999
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcC
Q 040365 141 RHVSFSSIMPACAHLTTLHLGKQLHGCIIRNG 172 (514)
Q Consensus 141 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 172 (514)
|.+|+..+++.+.+.+++..|.++...|+...
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999999999998888888877776654
No 302
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=86.64 E-value=5.8 Score=30.37 Aligned_cols=63 Identities=14% Similarity=0.157 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHH
Q 040365 224 AHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADL 288 (514)
Q Consensus 224 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 288 (514)
.-+..+-+..+....+-|+.....+.|.||.+.+++..|.++|+.+..+.| +....|..+++-
T Consensus 26 ~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lqE 88 (108)
T PF02284_consen 26 GWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHHH
Confidence 335566666666777889999999999999999999999999998865544 333377776653
No 303
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=86.17 E-value=1.7 Score=25.42 Aligned_cols=27 Identities=7% Similarity=0.156 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHH
Q 040365 210 SWTAVIMGNALHGNAHDAISLFEQMEK 236 (514)
Q Consensus 210 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 236 (514)
+|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 466666666666777777777666665
No 304
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.99 E-value=20 Score=30.25 Aligned_cols=88 Identities=15% Similarity=0.097 Sum_probs=49.6
Q ss_pred HHHccCCHHHHHHHHHHhHHhcCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHH
Q 040365 252 ACSHAGLIDKAWSYFNSMTKDYGIAPS-FEHYAAVADLLGRAGKLQEAYEFISNMHAG-PTENVWLTLLSACRVHKNVEL 329 (514)
Q Consensus 252 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p~~~~~~~ll~~~~~~~~~~~ 329 (514)
.-...++.+++..++..+. -+.|. ...-..-.-.+.+.|++.+|..+|+++... |....-.+|+..|.....-..
T Consensus 19 ~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred HHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence 3345667777777777764 44553 222233344466778888888888887533 444444556666654443333
Q ss_pred HHHHHHHHHhcCC
Q 040365 330 AGKVAEKIFMIDP 342 (514)
Q Consensus 330 a~~~~~~~~~~~p 342 (514)
=....+++++.++
T Consensus 96 Wr~~A~evle~~~ 108 (160)
T PF09613_consen 96 WRRYADEVLESGA 108 (160)
T ss_pred HHHHHHHHHhcCC
Confidence 3444444555443
No 305
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=85.76 E-value=21 Score=30.41 Aligned_cols=131 Identities=16% Similarity=0.095 Sum_probs=60.5
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 040365 128 KFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLGKQLHGCIIRNGF-DDNMFIASSLLDMYAKCGNIRLARCIFDKMDLH 206 (514)
Q Consensus 128 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~ 206 (514)
++++.+.+.+++|+...+..++..+.+.|.+..-.++. ..++ +++..+...|++.-. ....+.++=-.|..+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll----q~~Vi~DSk~lA~~LLs~~~---~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL----QYHVIPDSKPLACQLLSLGN---QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH----hhcccCCcHHHHHHHHHhHc---cChHHHHHHHHHHHH
Confidence 44555556667777777777777777766655443332 2232 222333322322211 112222222222222
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHh
Q 040365 207 DIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSM 269 (514)
Q Consensus 207 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 269 (514)
=-..+..++..+...|++-+|+++.++.... +...-..++.+-.+.++...-..+|+-.
T Consensus 88 L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 88 LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2223445556666677777777766654221 1111233455555555544444444433
No 306
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=85.57 E-value=95 Score=37.71 Aligned_cols=309 Identities=10% Similarity=0.050 Sum_probs=165.2
Q ss_pred HHhCCCChHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHHCCCHHHHHHHHc-cCCCCChhHHHHHHHHHHHCCChhHH
Q 040365 50 IFADYVDVIKGKEIHGYAIRHGL--DANVCIGSSLINMYAKCARVEDSHRLFC-LLPVKDAISWNSIIAGCVQNGLFDEG 126 (514)
Q Consensus 50 ~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~f~-~~~~~d~~~~~~li~~~~~~g~~~~A 126 (514)
+-.+.+.+..|...++.-..... ......+-.|...|+.-++.|...-+.. ....+++ ..-|.-....|++..|
T Consensus 1392 aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g~~~da 1468 (2382)
T KOG0890|consen 1392 ASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASGNWADA 1468 (2382)
T ss_pred HHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhccHHHH
Confidence 44455666667666665210000 1122234445557888888777666665 3333432 2344555678899999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHH-HHHHHhcCCHHHHHHHHHhCCC
Q 040365 127 LKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSL-LDMYAKCGNIRLARCIFDKMDL 205 (514)
Q Consensus 127 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~~y~k~g~~~~A~~~~~~m~~ 205 (514)
...|+++.+.+ ++...+++.++..--..+.++...-..+-.... ..+...-++++ +.+-.+.++++.-..... .
T Consensus 1469 ~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~ 1543 (2382)
T KOG0890|consen 1469 AACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS---D 1543 (2382)
T ss_pred HHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh---c
Confidence 99999988764 334677777777666666666655543333322 23333333333 455567777777766655 5
Q ss_pred CChhHHHHH-HH-HHHhC--CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHh----------HH
Q 040365 206 HDIVSWTAV-IM-GNALH--GNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSM----------TK 271 (514)
Q Consensus 206 ~d~~~~~~l-i~-~~~~~--g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m----------~~ 271 (514)
++..+|.+. +. .+.+. .+.-.-.++.+-+++.-+.| +.+|+..|.+..+.++.-.+ ..
T Consensus 1544 ~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~ 1615 (2382)
T KOG0890|consen 1544 RNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIEN--------LSACSIEGSYVRSYEILMKLHLLLELENSIEE 1615 (2382)
T ss_pred ccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhh--------HHHhhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666665 22 22221 12212223333333321111 22333333322222221111 11
Q ss_pred hcCCCCCH------hHHHHH---HHHHHhcCCHHHHHH-HHHhCCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040365 272 DYGIAPSF------EHYAAV---ADLLGRAGKLQEAYE-FISNMHAG-----PTENVWLTLLSACRVHKNVELAGKVAEK 336 (514)
Q Consensus 272 ~~~~~p~~------~~~~~l---i~~~~~~g~~~~A~~-~~~~m~~~-----p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 336 (514)
..+..++. ..|-.- .+-+.+....=-|.+ .+...... .-..+|-.....++..|.++.|....-.
T Consensus 1616 l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~ 1695 (2382)
T KOG0890|consen 1616 LKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLN 1695 (2382)
T ss_pred hhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHh
Confidence 11233321 111111 111222111111111 11111112 2346899999999999999999998888
Q ss_pred HHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHhCCC
Q 040365 337 IFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRNKGM 376 (514)
Q Consensus 337 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 376 (514)
+.+..+ +..+.-.+......|+-..|..+++...+...
T Consensus 1696 A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1696 AKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred hhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 877774 46888899999999999999999998886544
No 307
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=85.43 E-value=68 Score=35.94 Aligned_cols=254 Identities=11% Similarity=-0.075 Sum_probs=119.2
Q ss_pred HHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCc
Q 040365 97 RLFCLLPVKDAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLGKQLHGCIIRNGFDDN 176 (514)
Q Consensus 97 ~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 176 (514)
.+...+..+|...--..+..+.+.+. .++...+.+.... +|...-...+.++.+.+........+..+++ .+|
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~---~~d 697 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTP-PGFGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLG---SPD 697 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcc-hhHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhc---CCC
Confidence 44444556666666666666666654 3344444444432 3333333444444433221111122223332 245
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 040365 177 MFIASSLLDMYAKCGNIRLARCIFDKMDLHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHA 256 (514)
Q Consensus 177 ~~~~~~li~~y~k~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 256 (514)
..+-...++++...+.- ....+...+..+|...-...+.++.+.+..+. +.... -.+|...-.....++...
T Consensus 698 ~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~~~ 769 (897)
T PRK13800 698 PVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLATL 769 (897)
T ss_pred HHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHHHh
Confidence 55555555555544321 12234445556666555555666665544322 11222 234555555555555555
Q ss_pred CCHHH-HHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 040365 257 GLIDK-AWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISNMHAGPTENVWLTLLSACRVHKNVELAGKVAE 335 (514)
Q Consensus 257 g~~~~-a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 335 (514)
+..+. +...+..+.+ .++...-...+.++++.|..+.+...+..+...+|..+-...+.++...+.. ++...+.
T Consensus 770 ~~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~-~a~~~L~ 844 (897)
T PRK13800 770 GAGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAAD-VAVPALV 844 (897)
T ss_pred ccccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhcccc-chHHHHH
Confidence 54332 2333434432 3556666677777777776655444444443345655555566666666543 3434433
Q ss_pred HHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHH
Q 040365 336 KIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMR 372 (514)
Q Consensus 336 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 372 (514)
.+++ +| +...-...+.++.+.+.-..+...+....
T Consensus 845 ~~L~-D~-~~~VR~~A~~aL~~~~~~~~a~~~L~~al 879 (897)
T PRK13800 845 EALT-DP-HLDVRKAAVLALTRWPGDPAARDALTTAL 879 (897)
T ss_pred HHhc-CC-CHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 3332 12 23344444455544322234444444433
No 308
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=84.23 E-value=77 Score=35.56 Aligned_cols=174 Identities=13% Similarity=0.122 Sum_probs=96.2
Q ss_pred HHHHHHHCCChhHHHHHHHHHHHC-----CCCCCHH--HHHHHHHHHhccC--ChHHHHHHHHHHHHcC--------CCC
Q 040365 113 IIAGCVQNGLFDEGLKFFRQMLIA-----KIKPRHV--SFSSIMPACAHLT--TLHLGKQLHGCIIRNG--------FDD 175 (514)
Q Consensus 113 li~~~~~~g~~~~A~~l~~~m~~~-----g~~p~~~--t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~--------~~~ 175 (514)
++-+-..+.++.+-+-+++++++. .++.|.+ -|...+...+..| -+++.+.+ +.+.| +.|
T Consensus 857 l~VAq~SqkDPkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~---I~kh~Ly~~aL~ly~~ 933 (1265)
T KOG1920|consen 857 LLVAQKSQKDPKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSECGETYFPECKNY---IKKHGLYDEALALYKP 933 (1265)
T ss_pred HHHHHHhccChHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcCccccHHHHHH---HHhcccchhhhheecc
Confidence 334445566777777777776531 1112211 2334444444444 33333333 33333 245
Q ss_pred cHHHHHHHHHH----HHhcCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHH--HHHH
Q 040365 176 NMFIASSLLDM----YAKCGNIRLARCIFDKMDLHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVA--FVAV 249 (514)
Q Consensus 176 ~~~~~~~li~~----y~k~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~l 249 (514)
+...+.-...+ +...+.+++|--.|+..-+ ..--+.+|...|+|.+|+.+-.+|.. .-|... -..|
T Consensus 934 ~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk-----lekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L 1005 (1265)
T KOG1920|consen 934 DSEKQKVIYEAYADHLREELMSDEAALMYERCGK-----LEKALKAYKECGDWREALSLAAQLSE---GKDELVILAEEL 1005 (1265)
T ss_pred CHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc-----HHHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHH
Confidence 55444444433 4455666777666655431 12235667777888888887777643 112222 2456
Q ss_pred HHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 040365 250 LTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISNMH 306 (514)
Q Consensus 250 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 306 (514)
..-+...++.-+|-++..+... .| .-.+..|++...+++|..+-....
T Consensus 1006 ~s~L~e~~kh~eAa~il~e~~s----d~-----~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1006 VSRLVEQRKHYEAAKILLEYLS----DP-----EEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHcccchhHHHHHHHHhc----CH-----HHHHHHHhhHhHHHHHHHHHHhcc
Confidence 7777788888888777765532 22 334566788888888888776554
No 309
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=83.97 E-value=37 Score=31.66 Aligned_cols=58 Identities=12% Similarity=-0.041 Sum_probs=52.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHh
Q 040365 316 TLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRN 373 (514)
Q Consensus 316 ~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 373 (514)
.....|...|.+.+|.++.++++.++|-+...+..|...|+..|+--.|.+-++.+.+
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3446789999999999999999999999999999999999999998888888888754
No 310
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=83.87 E-value=0.53 Score=39.14 Aligned_cols=54 Identities=11% Similarity=0.135 Sum_probs=33.4
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 040365 148 IMPACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFD 201 (514)
Q Consensus 148 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~ 201 (514)
++..+.+.+.++...++++.+.+.+...+..+.+.|+..|++.++.++..++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 445555566666666677777666555566777777777777766555555555
No 311
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.54 E-value=42 Score=31.96 Aligned_cols=150 Identities=13% Similarity=0.006 Sum_probs=96.1
Q ss_pred HCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc---CCCCcHHHHHHHHHHHHhcCCHHH
Q 040365 119 QNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLGKQLHGCIIRN---GFDDNMFIASSLLDMYAKCGNIRL 195 (514)
Q Consensus 119 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~y~k~g~~~~ 195 (514)
.+|...+|-..++++.+. .+.|...+...=.+|...|+.+.-+..+++++.. ++|-...+-..+.-++..||-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 467777777778887765 5667777777778888888888888888877654 222233444444555668899999
Q ss_pred HHHHHHhCCCC---ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHh
Q 040365 196 ARCIFDKMDLH---DIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKP---NSVAFVAVLTACSHAGLIDKAWSYFNSM 269 (514)
Q Consensus 196 A~~~~~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m 269 (514)
|++.-++..+- |..+-.+....+-..|+..++.+...+-...=-.. -...|-...-.+...+.++.|.++|+.-
T Consensus 194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 194 AEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred HHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHH
Confidence 98888876533 44455556666667888888888776543210000 0111222233344567888888888743
No 312
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=83.45 E-value=6.4 Score=38.94 Aligned_cols=122 Identities=16% Similarity=0.222 Sum_probs=85.8
Q ss_pred HHhCCChHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHH
Q 040365 218 NALHGNAHDAI-SLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQ 296 (514)
Q Consensus 218 ~~~~g~~~~A~-~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 296 (514)
-...|+.-.|- ++|.-+....-.|+.+-..+.| ..+.|.++.+.+.+....+ -+.....+-.+++....+.|+++
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~ 374 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWR 374 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHH
Confidence 34456665554 4555566665677777666665 5678999999998887643 34446677888999999999999
Q ss_pred HHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 040365 297 EAYEFISNMHAG--PTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPN 343 (514)
Q Consensus 297 ~A~~~~~~m~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 343 (514)
+|..+-+.|... .+..+.........+.|-++++...+++++.++|+
T Consensus 375 ~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 375 EALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 999988877421 34444444445566778889999999999888755
No 313
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=83.43 E-value=0.57 Score=38.92 Aligned_cols=84 Identities=14% Similarity=0.252 Sum_probs=54.2
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHCCCHHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHH
Q 040365 47 VLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSSLINMYAKCARVEDSHRLFCLLPVKDAISWNSIIAGCVQNGLFDEG 126 (514)
Q Consensus 47 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A 126 (514)
+++.+.+.+.+.....+++.+.+.+...+....+.|+..|++.++.+...++++.... .-...++..+.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4556666677777777777777666556677788888888888777777777774332 2233456666666666666
Q ss_pred HHHHHHH
Q 040365 127 LKFFRQM 133 (514)
Q Consensus 127 ~~l~~~m 133 (514)
.-++.++
T Consensus 90 ~~Ly~~~ 96 (143)
T PF00637_consen 90 VYLYSKL 96 (143)
T ss_dssp HHHHHCC
T ss_pred HHHHHHc
Confidence 6666554
No 314
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=82.35 E-value=13 Score=32.63 Aligned_cols=67 Identities=7% Similarity=-0.085 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHHCCCHHHHHHHHccCC-------CCChhHHHHHHHHHHHCCChhHH
Q 040365 59 KGKEIHGYAIRHGLDANVCIGSSLINMYAKCARVEDSHRLFCLLP-------VKDAISWNSIIAGCVQNGLFDEG 126 (514)
Q Consensus 59 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~-------~~d~~~~~~li~~~~~~g~~~~A 126 (514)
.|++.|-.+...+.-.++...-+|...|. ..+.+.|..++.... ..|+..+.+|++.|.+.|+++.|
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 35555555554444445555555555554 334444444443321 33555566666666666666555
No 315
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=82.34 E-value=3.2 Score=23.85 Aligned_cols=27 Identities=11% Similarity=0.054 Sum_probs=13.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 040365 317 LLSACRVHKNVELAGKVAEKIFMIDPN 343 (514)
Q Consensus 317 ll~~~~~~~~~~~a~~~~~~~~~~~p~ 343 (514)
+..++...|+.++|...++++++..|+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 334444555555555555555555443
No 316
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=82.12 E-value=2.4 Score=26.01 Aligned_cols=28 Identities=29% Similarity=0.285 Sum_probs=21.6
Q ss_pred chHHHHHHHHHHccChhHHHHHHHHHHh
Q 040365 346 GAYVILSNTYAAARRWKDAASLRVFMRN 373 (514)
Q Consensus 346 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 373 (514)
.+++.|+..|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677888888888888888888887754
No 317
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=81.78 E-value=13 Score=32.61 Aligned_cols=72 Identities=19% Similarity=-0.001 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc---CCCCcHHHHHHHHHHHHhcCCHHHH
Q 040365 124 DEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLGKQLHGCIIRN---GFDDNMFIASSLLDMYAKCGNIRLA 196 (514)
Q Consensus 124 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~y~k~g~~~~A 196 (514)
++|++.|-++...+.--++.....+...| ...+.+++.+++..+++. +-.+|+.++.+|++.|-+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 45566665555554333333333333333 345566666666655543 2245566666666666666666655
No 318
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=81.56 E-value=23 Score=27.50 Aligned_cols=89 Identities=11% Similarity=0.070 Sum_probs=57.6
Q ss_pred CCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHCCCHHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHH
Q 040365 54 YVDVIKGKEIHGYAIRHGLDANVCIGSSLINMYAKCARVEDSHRLFCLLPVKDAISWNSIIAGCVQNGLFDEGLKFFRQM 133 (514)
Q Consensus 54 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m 133 (514)
....++|..+.+.+...+- ....+--.-+..+...|++++|...=.....||...|-+|-. .+.|..+++...+.++
T Consensus 19 ~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRL 95 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHH
Confidence 3456788888888877763 334444445556778899999966666666789999877655 4788888888888887
Q ss_pred HHCCCCCCHHHHH
Q 040365 134 LIAKIKPRHVSFS 146 (514)
Q Consensus 134 ~~~g~~p~~~t~~ 146 (514)
..+| .|....|.
T Consensus 96 a~~g-~~~~q~Fa 107 (116)
T PF09477_consen 96 ASSG-SPELQAFA 107 (116)
T ss_dssp CT-S-SHHHHHHH
T ss_pred HhCC-CHHHHHHH
Confidence 7665 45444443
No 319
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=81.36 E-value=44 Score=30.72 Aligned_cols=218 Identities=18% Similarity=0.245 Sum_probs=120.6
Q ss_pred HHHHHHHHHCCChhHHHHHHHHHHHC---CC--CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc-----CCCCcHHHH
Q 040365 111 NSIIAGCVQNGLFDEGLKFFRQMLIA---KI--KPRHVSFSSIMPACAHLTTLHLGKQLHGCIIRN-----GFDDNMFIA 180 (514)
Q Consensus 111 ~~li~~~~~~g~~~~A~~l~~~m~~~---g~--~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~ 180 (514)
-.+|..+.+.|++++.++.|.+|... .+ .-+..+.++++..-+...+.+.-..+++..++. +-..--.+-
T Consensus 69 KQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTN 148 (440)
T KOG1464|consen 69 KQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTN 148 (440)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeecc
Confidence 34566666777777777776666431 11 124455666766666666666655555543321 101111223
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCC--------CC-------hhHHHHHHHHHHhCCChHHHHHHHHHHHH-cCCCCCHH
Q 040365 181 SSLLDMYAKCGNIRLARCIFDKMDL--------HD-------IVSWTAVIMGNALHGNAHDAISLFEQMEK-DGVKPNSV 244 (514)
Q Consensus 181 ~~li~~y~k~g~~~~A~~~~~~m~~--------~d-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~ 244 (514)
+-|...|...|++.+-.+++.++.. .| ...|..=|..|....+-.+-..+|++... ...-|...
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl 228 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL 228 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH
Confidence 4566777778888887777777641 11 24577777888888877777778887654 22334443
Q ss_pred HHHHHHHHHH-----ccCCHHHHHHHHHHhHHhcCCC--CC---HhHHHHHHHHHHhcCC----HHHHHHHHHhCCCCCC
Q 040365 245 AFVAVLTACS-----HAGLIDKAWSYFNSMTKDYGIA--PS---FEHYAAVADLLGRAGK----LQEAYEFISNMHAGPT 310 (514)
Q Consensus 245 t~~~ll~a~~-----~~g~~~~a~~~~~~m~~~~~~~--p~---~~~~~~li~~~~~~g~----~~~A~~~~~~m~~~p~ 310 (514)
...++.-|. +.|.+++|-.-|-+..+.+.-. |. ---|..|..++.++|- -++|. -....|.
T Consensus 229 -ImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAK----PyKNdPE 303 (440)
T KOG1464|consen 229 -IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAK----PYKNDPE 303 (440)
T ss_pred -HHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccC----CCCCCHH
Confidence 334555553 4577887765444443544322 22 2345566677766652 11211 0012255
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHH
Q 040365 311 ENVWLTLLSACRVHKNVELAGKVA 334 (514)
Q Consensus 311 ~~~~~~ll~~~~~~~~~~~a~~~~ 334 (514)
....+.|+.+|..+ +..+-++++
T Consensus 304 IlAMTnlv~aYQ~N-dI~eFE~Il 326 (440)
T KOG1464|consen 304 ILAMTNLVAAYQNN-DIIEFERIL 326 (440)
T ss_pred HHHHHHHHHHHhcc-cHHHHHHHH
Confidence 66778888888654 444433333
No 320
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=81.29 E-value=11 Score=28.84 Aligned_cols=48 Identities=23% Similarity=0.220 Sum_probs=31.7
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 040365 305 MHAGPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILS 352 (514)
Q Consensus 305 m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 352 (514)
+..-|++.+..+.+.+|++.+|+..|.++++-+...-.+....|..++
T Consensus 39 ~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 39 YDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp SSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred cccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 334588888899999999999999999999888765443333555443
No 321
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=81.23 E-value=2.3 Score=23.30 Aligned_cols=23 Identities=22% Similarity=0.111 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHccChhHHHHHHH
Q 040365 347 AYVILSNTYAAARRWKDAASLRV 369 (514)
Q Consensus 347 ~~~~l~~~~~~~g~~~~a~~~~~ 369 (514)
....|..++...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45667777888888888877764
No 322
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=81.06 E-value=11 Score=28.68 Aligned_cols=47 Identities=23% Similarity=0.221 Sum_probs=32.8
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 040365 305 MHAGPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVIL 351 (514)
Q Consensus 305 m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 351 (514)
+..-|++.+..+-+.||++.+|+..|.++++-+...-.++...|-.+
T Consensus 36 ~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~ 82 (103)
T cd00923 36 YDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYI 82 (103)
T ss_pred cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHH
Confidence 34457888888888888888888888888887764433333345443
No 323
>PHA02875 ankyrin repeat protein; Provisional
Probab=80.81 E-value=64 Score=32.21 Aligned_cols=209 Identities=12% Similarity=0.055 Sum_probs=108.2
Q ss_pred HHHHhcCChhHHHHHHHHHhhCCCCCChhh--HHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchh--HHHHHHHHHHHC
Q 040365 14 VGLARNGLYEEALNIVRQMGNVNLKPDSFT--LSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVC--IGSSLINMYAKC 89 (514)
Q Consensus 14 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~ 89 (514)
...++.|+.+-+ +.+.+.|..|+... ..+.+..++..|+.+ +.+.+++.|..++.. ...+.+...++.
T Consensus 7 ~~A~~~g~~~iv----~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~ 78 (413)
T PHA02875 7 CDAILFGELDIA----RRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEE 78 (413)
T ss_pred HHHHHhCCHHHH----HHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHC
Confidence 344556766444 44445676665432 233455555667765 445566677655432 123445566788
Q ss_pred CCHHHHHHHHccCCCCC----hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHH--HHHHHHHhccCChHHHHH
Q 040365 90 ARVEDSHRLFCLLPVKD----AISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSF--SSIMPACAHLTTLHLGKQ 163 (514)
Q Consensus 90 g~~~~A~~~f~~~~~~d----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~--~~ll~~~~~~~~~~~a~~ 163 (514)
|+.+.+..+++.-...+ ..-++. +...+..|+. ++++.+.+.|..|+.... .+.+...+..|+.+.++.
T Consensus 79 g~~~~v~~Ll~~~~~~~~~~~~~g~tp-L~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~ 153 (413)
T PHA02875 79 GDVKAVEELLDLGKFADDVFYKDGMTP-LHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIEL 153 (413)
T ss_pred CCHHHHHHHHHcCCcccccccCCCCCH-HHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 99999888887643221 111222 3333455655 344555566766654321 233444556677665544
Q ss_pred HHHHHHHcCCCCcHH--HHHHHHHHHHhcCCHHHHHHHHHhCCCCChhH---HHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 040365 164 LHGCIIRNGFDDNMF--IASSLLDMYAKCGNIRLARCIFDKMDLHDIVS---WTAVIMGNALHGNAHDAISLFEQMEKDG 238 (514)
Q Consensus 164 ~~~~~~~~~~~~~~~--~~~~li~~y~k~g~~~~A~~~~~~m~~~d~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~g 238 (514)
++ +.|..++.. ...+.+...+..|+.+-+.-+++.-..++... ..+.+...+..|+.+ +.+-+.+.|
T Consensus 154 Ll----~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~g 225 (413)
T PHA02875 154 LI----DHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRG 225 (413)
T ss_pred HH----hcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCC
Confidence 43 444333211 12233444566788877777776554443221 223444334556553 444455567
Q ss_pred CCCCH
Q 040365 239 VKPNS 243 (514)
Q Consensus 239 ~~p~~ 243 (514)
..|+.
T Consensus 226 ad~n~ 230 (413)
T PHA02875 226 ADCNI 230 (413)
T ss_pred cCcch
Confidence 77664
No 324
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=80.67 E-value=4 Score=24.96 Aligned_cols=28 Identities=14% Similarity=0.229 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 040365 209 VSWTAVIMGNALHGNAHDAISLFEQMEK 236 (514)
Q Consensus 209 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 236 (514)
.+++.+...|...|++++|+.++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3556666666666666666666666543
No 325
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=80.14 E-value=3.5 Score=23.92 Aligned_cols=28 Identities=14% Similarity=0.151 Sum_probs=23.9
Q ss_pred chHHHHHHHHHHccChhHHHHHHHHHHh
Q 040365 346 GAYVILSNTYAAARRWKDAASLRVFMRN 373 (514)
Q Consensus 346 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 373 (514)
..+..++..|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4678899999999999999999998765
No 326
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=79.47 E-value=55 Score=30.68 Aligned_cols=20 Identities=10% Similarity=0.134 Sum_probs=15.2
Q ss_pred HHHHHHccChhHHHHHHHHH
Q 040365 352 SNTYAAARRWKDAASLRVFM 371 (514)
Q Consensus 352 ~~~~~~~g~~~~a~~~~~~m 371 (514)
+..+.+.++|++|.+.++.-
T Consensus 253 ~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 253 GKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHhhcCHHHHHHHHHHH
Confidence 34466889999999998753
No 327
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=78.28 E-value=5.2 Score=21.96 Aligned_cols=29 Identities=24% Similarity=0.155 Sum_probs=15.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 040365 314 WLTLLSACRVHKNVELAGKVAEKIFMIDP 342 (514)
Q Consensus 314 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 342 (514)
|..+...+...++++.|...+++.++..|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 44445555555555555555555555444
No 328
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=78.04 E-value=28 Score=29.96 Aligned_cols=45 Identities=24% Similarity=0.171 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccC----hhHHHHHHHHH
Q 040365 327 VELAGKVAEKIFMIDPNNMGAYVILSNTYAAARR----WKDAASLRVFM 371 (514)
Q Consensus 327 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~----~~~a~~~~~~m 371 (514)
+++|+.-|++++.++|+...++..+.++|...+. ..+|...|++.
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 4667778888889999999999999999987664 33444444444
No 329
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=77.20 E-value=9.7 Score=36.06 Aligned_cols=25 Identities=28% Similarity=0.286 Sum_probs=15.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCC
Q 040365 320 ACRVHKNVELAGKVAEKIFMIDPNN 344 (514)
Q Consensus 320 ~~~~~~~~~~a~~~~~~~~~~~p~~ 344 (514)
+-...|+..+|.+-++.+++++|.+
T Consensus 174 AR~~Lg~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 174 ARESLGNNMEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHhhHHHHHHhHHHHHhhCccc
Confidence 3344456666666677777777764
No 330
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=77.11 E-value=41 Score=27.95 Aligned_cols=18 Identities=11% Similarity=0.154 Sum_probs=8.5
Q ss_pred HHHCCCHHHHHHHHccCC
Q 040365 86 YAKCARVEDSHRLFCLLP 103 (514)
Q Consensus 86 ~~~~g~~~~A~~~f~~~~ 103 (514)
+.+.|++++|.++|+++.
T Consensus 54 ~i~rg~w~eA~rvlr~l~ 71 (153)
T TIGR02561 54 LIARGNYDEAARILRELL 71 (153)
T ss_pred HHHcCCHHHHHHHHHhhh
Confidence 344444555555544444
No 331
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=77.01 E-value=32 Score=26.68 Aligned_cols=87 Identities=17% Similarity=0.162 Sum_probs=52.3
Q ss_pred CChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHH
Q 040365 156 TTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMDLHDIVSWTAVIMGNALHGNAHDAISLFEQME 235 (514)
Q Consensus 156 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~ 235 (514)
...++|..|.+.+...+- ....+.-.-+..+...|++++|...=.....||..+|-++-. .+.|..+++...+.++.
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLA 96 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 346777777777776653 333343344556778888888855555556788888877644 46777778877777776
Q ss_pred HcCCCCCHHHH
Q 040365 236 KDGVKPNSVAF 246 (514)
Q Consensus 236 ~~g~~p~~~t~ 246 (514)
.+| .|....|
T Consensus 97 ~~g-~~~~q~F 106 (116)
T PF09477_consen 97 SSG-SPELQAF 106 (116)
T ss_dssp T-S-SHHHHHH
T ss_pred hCC-CHHHHHH
Confidence 654 3444444
No 332
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.88 E-value=26 Score=35.94 Aligned_cols=76 Identities=12% Similarity=0.067 Sum_probs=32.9
Q ss_pred HHHHHHHHHHCCCHHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh
Q 040365 79 GSSLINMYAKCARVEDSHRLFCLLPVKDAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTL 158 (514)
Q Consensus 79 ~~~li~~~~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 158 (514)
.+.++..+.+.|-.++|+++-- |..- -.....+.|+++.|.++..+. -+..-|..|..+....+++
T Consensus 617 rt~va~Fle~~g~~e~AL~~s~-----D~d~---rFelal~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l 682 (794)
T KOG0276|consen 617 RTKVAHFLESQGMKEQALELST-----DPDQ---RFELALKLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGEL 682 (794)
T ss_pred hhhHHhHhhhccchHhhhhcCC-----Chhh---hhhhhhhcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccc
Confidence 3445555555555555554421 1110 011123445555554443332 1333444555555555555
Q ss_pred HHHHHHHHHH
Q 040365 159 HLGKQLHGCI 168 (514)
Q Consensus 159 ~~a~~~~~~~ 168 (514)
..|.+.+...
T Consensus 683 ~lA~EC~~~a 692 (794)
T KOG0276|consen 683 PLASECFLRA 692 (794)
T ss_pred hhHHHHHHhh
Confidence 5555554443
No 333
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=75.83 E-value=6.5 Score=22.79 Aligned_cols=28 Identities=18% Similarity=0.171 Sum_probs=24.8
Q ss_pred chHHHHHHHHHHccChhHHHHHHHHHHh
Q 040365 346 GAYVILSNTYAAARRWKDAASLRVFMRN 373 (514)
Q Consensus 346 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 373 (514)
.+|..++..|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4688899999999999999999998754
No 334
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=75.79 E-value=4.9 Score=26.74 Aligned_cols=31 Identities=19% Similarity=0.220 Sum_probs=25.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 040365 315 LTLLSACRVHKNVELAGKVAEKIFMIDPNNM 345 (514)
Q Consensus 315 ~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 345 (514)
-.|.-++.+.|+++.|.+..+.+++.+|+|.
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~ 35 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNR 35 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-H
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcH
Confidence 3456688999999999999999999999885
No 335
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.70 E-value=1.2e+02 Score=32.70 Aligned_cols=173 Identities=12% Similarity=0.104 Sum_probs=89.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHH----hCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 040365 12 VIVGLARNGLYEEALNIVRQMGNVNLKPDSFTLSSVLPIF----ADYVDVIKGKEIHGYAIRHGLDANVCIGSSLINMYA 87 (514)
Q Consensus 12 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~----~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 87 (514)
-|..+.+...+.-|+.+-+. .+ .|..+...+...| .+.|++++|.+-|-+.+.. ++| ..+|.-|.
T Consensus 340 kL~iL~kK~ly~~Ai~LAk~---~~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfL 408 (933)
T KOG2114|consen 340 KLDILFKKNLYKVAINLAKS---QH--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFL 408 (933)
T ss_pred HHHHHHHhhhHHHHHHHHHh---cC--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhc
Confidence 34555555566666655443 22 2333444444433 3567777776665544322 122 12333444
Q ss_pred HCCCHHHHHHHHccCCCC---ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHH
Q 040365 88 KCARVEDSHRLFCLLPVK---DAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLGKQL 164 (514)
Q Consensus 88 ~~g~~~~A~~~f~~~~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 164 (514)
...++..-..+++.+.+. +...-+.|+.+|.+.++.++-.++.+.-. .|.. .+-....+..|-+.+-+++|..+
T Consensus 409 daq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~L 485 (933)
T KOG2114|consen 409 DAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELL 485 (933)
T ss_pred CHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHH
Confidence 444444444444444322 33344567788888887777666655433 2321 11234456666666666666554
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 040365 165 HGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMDLH 206 (514)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~ 206 (514)
-....+ +..+... .+-..|++++|.+.+..++.+
T Consensus 486 A~k~~~-----he~vl~i---lle~~~ny~eAl~yi~slp~~ 519 (933)
T KOG2114|consen 486 ATKFKK-----HEWVLDI---LLEDLHNYEEALRYISSLPIS 519 (933)
T ss_pred HHHhcc-----CHHHHHH---HHHHhcCHHHHHHHHhcCCHH
Confidence 433222 2223333 344568899999999988744
No 336
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=75.37 E-value=13 Score=32.95 Aligned_cols=72 Identities=18% Similarity=0.113 Sum_probs=50.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc---chHHHHHH
Q 040365 282 YAAVADLLGRAGKLQEAYEFISN-MHAGP-TENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNM---GAYVILSN 353 (514)
Q Consensus 282 ~~~li~~~~~~g~~~~A~~~~~~-m~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~ 353 (514)
.+..++.+.+.+.+++|+...+. .+.+| |...-..|+..++..|++++|..-++-.-++.|+.. ..|..++.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 34456677788888888887664 45555 455566778888899999999888888888877643 34444443
No 337
>PRK10941 hypothetical protein; Provisional
Probab=75.28 E-value=17 Score=33.87 Aligned_cols=61 Identities=23% Similarity=0.120 Sum_probs=54.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHhC
Q 040365 314 WLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRNK 374 (514)
Q Consensus 314 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 374 (514)
.+.|-.++.+.++++.|.++.+.++.+.|+++.-+.--+-+|.+.|.+..|..=++...+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 4667778999999999999999999999999988888888899999999999988877654
No 338
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=75.19 E-value=38 Score=28.09 Aligned_cols=76 Identities=14% Similarity=0.129 Sum_probs=48.6
Q ss_pred HHHHHHHHHCCCHHHHHHHHccCC---------CCChhHHHHHHHHHHHCCC-hhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040365 80 SSLINMYAKCARVEDSHRLFCLLP---------VKDAISWNSIIAGCVQNGL-FDEGLKFFRQMLIAKIKPRHVSFSSIM 149 (514)
Q Consensus 80 ~~li~~~~~~g~~~~A~~~f~~~~---------~~d~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~ll 149 (514)
|.++.-.+..+++.....+++.+. ..|-.+|++++.+..+..- ---+..+|.-|++.+.+++..-|..++
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 444444444444444444444432 2355678888888765555 344677888888877888888888888
Q ss_pred HHHhcc
Q 040365 150 PACAHL 155 (514)
Q Consensus 150 ~~~~~~ 155 (514)
.+|.+.
T Consensus 123 ~~~l~g 128 (145)
T PF13762_consen 123 KAALRG 128 (145)
T ss_pred HHHHcC
Confidence 887665
No 339
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=75.08 E-value=3.8 Score=23.48 Aligned_cols=28 Identities=14% Similarity=0.140 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHccChhHHHHHHHHHHhC
Q 040365 347 AYVILSNTYAAARRWKDAASLRVFMRNK 374 (514)
Q Consensus 347 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 374 (514)
++..++.+|.+.|++++|.+.++++.++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4567888999999999999999998764
No 340
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=74.75 E-value=22 Score=23.65 Aligned_cols=27 Identities=7% Similarity=-0.094 Sum_probs=22.1
Q ss_pred HHHHHHHHHHccChhHHHHHHHHHHhC
Q 040365 348 YVILSNTYAAARRWKDAASLRVFMRNK 374 (514)
Q Consensus 348 ~~~l~~~~~~~g~~~~a~~~~~~m~~~ 374 (514)
...++-++.+.|++++|.+..+.+.+.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 346788899999999999999988764
No 341
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.25 E-value=1.3e+02 Score=32.25 Aligned_cols=128 Identities=10% Similarity=0.126 Sum_probs=72.7
Q ss_pred hhHHHHHHHHHHHCCCHHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 040365 76 VCIGSSLINMYAKCARVEDSHRLFCLLPVKDAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHL 155 (514)
Q Consensus 76 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 155 (514)
..++...|+.+.-.|++++|-...-.|-..+..-|.--+..+...++......++ .....+.+...|..+|..+..
T Consensus 392 ~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~l---Pt~~~rL~p~vYemvLve~L~- 467 (846)
T KOG2066|consen 392 KKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPYL---PTGPPRLKPLVYEMVLVEFLA- 467 (846)
T ss_pred HHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhccC---CCCCcccCchHHHHHHHHHHH-
Confidence 3466777777777788888877777777777777777777776666655433221 111111233334444444333
Q ss_pred CChH--------------HHHH----HHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCChh
Q 040365 156 TTLH--------------LGKQ----LHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMDLHDIV 209 (514)
Q Consensus 156 ~~~~--------------~a~~----~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~d~~ 209 (514)
.+.. .+.. +..+..+. ..+..+-..|+..|...|++++|...+-....+++.
T Consensus 468 ~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~--Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~vf 537 (846)
T KOG2066|consen 468 SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQN--SESTALLEVLAHLYLYDNKYEKALPIYLKLQDKDVF 537 (846)
T ss_pred HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhh--ccchhHHHHHHHHHHHccChHHHHHHHHhccChHHH
Confidence 1100 0110 11111111 122334455999999999999999999888766543
No 342
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=73.84 E-value=28 Score=28.39 Aligned_cols=48 Identities=8% Similarity=0.058 Sum_probs=26.2
Q ss_pred CHHHHHHHHHHHHhc-CCCCcchH-HHHHHHHHHccChhHHHHHHHHHHh
Q 040365 326 NVELAGKVAEKIFMI-DPNNMGAY-VILSNTYAAARRWKDAASLRVFMRN 373 (514)
Q Consensus 326 ~~~~a~~~~~~~~~~-~p~~~~~~-~~l~~~~~~~g~~~~a~~~~~~m~~ 373 (514)
+..+++.+++.+.+. .|....-| ..|.-++.+.|+|+.++++.+.+.+
T Consensus 50 dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 50 DVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 455566666666652 23322222 2455566666666666666666554
No 343
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=73.81 E-value=8.1 Score=36.53 Aligned_cols=46 Identities=13% Similarity=0.075 Sum_probs=25.6
Q ss_pred HHHccCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHhcCCHHHHHH
Q 040365 252 ACSHAGLIDKAWSYFNSMTKDYGIAP-SFEHYAAVADLLGRAGKLQEAYE 300 (514)
Q Consensus 252 a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~ 300 (514)
-|.++|.+++|+..|..-. .+.| ++..|..-..+|.+..++..|+.
T Consensus 106 ~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~ 152 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEE 152 (536)
T ss_pred hhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHH
Confidence 4556666666666665432 3344 55555555556666655554443
No 344
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=71.34 E-value=7.4 Score=24.72 Aligned_cols=26 Identities=19% Similarity=0.178 Sum_probs=22.0
Q ss_pred HHHHHHHHccChhHHHHHHHHHHhCC
Q 040365 350 ILSNTYAAARRWKDAASLRVFMRNKG 375 (514)
Q Consensus 350 ~l~~~~~~~g~~~~a~~~~~~m~~~g 375 (514)
.|+.+|...|+.+.|++++++....|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 57889999999999999999888644
No 345
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=71.24 E-value=1.1e+02 Score=32.59 Aligned_cols=86 Identities=15% Similarity=0.125 Sum_probs=31.6
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHh---c
Q 040365 216 MGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGR---A 292 (514)
Q Consensus 216 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~---~ 292 (514)
..+.-.|+++.|++.+.+ ..+...|.+.+...+..+.-..-.+... ..+.....-.|....+..||..|.+ .
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 334456777777777665 2223344454444443332211111111 1111110111222455666666654 3
Q ss_pred CCHHHHHHHHHhCC
Q 040365 293 GKLQEAYEFISNMH 306 (514)
Q Consensus 293 g~~~~A~~~~~~m~ 306 (514)
.+..+|.+++--+.
T Consensus 341 td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 341 TDPREALQYLYLIC 354 (613)
T ss_dssp T-HHHHHHHHHGGG
T ss_pred cCHHHHHHHHHHHH
Confidence 45666666665543
No 346
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=70.92 E-value=93 Score=29.16 Aligned_cols=64 Identities=14% Similarity=0.157 Sum_probs=46.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCCC---ChhHHHHHHHHHHhCCChHHHHHHHHHHHH-----cCCCCCHH
Q 040365 181 SSLLDMYAKCGNIRLARCIFDKMDLH---DIVSWTAVIMGNALHGNAHDAISLFEQMEK-----DGVKPNSV 244 (514)
Q Consensus 181 ~~li~~y~k~g~~~~A~~~~~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~ 244 (514)
+.....|.++|.+.+|.++-++...- +...|-.++..++..|+--.|.+-++++.+ .|+..|..
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vdds 354 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDS 354 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchh
Confidence 44556788888888888888877633 556788888888888887777777777643 35555543
No 347
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=70.72 E-value=1.5e+02 Score=31.51 Aligned_cols=189 Identities=13% Similarity=0.098 Sum_probs=103.2
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHhh-CCCCCCh--hhHHHHHHHHh-CCCChHHHHHHHHHHHHhCCCCchh---
Q 040365 5 DLVSWNTVIVGLARNGLYEEALNIVRQMGN-VNLKPDS--FTLSSVLPIFA-DYVDVIKGKEIHGYAIRHGLDANVC--- 77 (514)
Q Consensus 5 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~--~t~~~ll~~~~-~~~~~~~a~~~~~~~~~~g~~~~~~--- 77 (514)
++..|..||. .|+..++...+ ..++|.. .++-.+...+. ...+++.|+..+++.....-.++..
T Consensus 29 ~l~~Y~kLI~---------~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k 99 (608)
T PF10345_consen 29 QLKQYYKLIA---------TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLK 99 (608)
T ss_pred hHHHHHHHHH---------HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHH
Confidence 4455666665 46777777763 3344432 23444445444 6678899998888775543222221
Q ss_pred --HHHHHHHHHHHCCCHHHHHHHHccCCCC----ChhHHH----HH-HHHHHHCCChhHHHHHHHHHHHCC---CCCCHH
Q 040365 78 --IGSSLINMYAKCARVEDSHRLFCLLPVK----DAISWN----SI-IAGCVQNGLFDEGLKFFRQMLIAK---IKPRHV 143 (514)
Q Consensus 78 --~~~~li~~~~~~g~~~~A~~~f~~~~~~----d~~~~~----~l-i~~~~~~g~~~~A~~l~~~m~~~g---~~p~~~ 143 (514)
....++..|.+.+... |.+..++..+. ....|. -+ +..+...+++..|++.++.+...- ..|-..
T Consensus 100 ~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~ 178 (608)
T PF10345_consen 100 FRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVF 178 (608)
T ss_pred HHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHH
Confidence 2345667777777665 77777664311 111222 22 222333478888888888876532 234444
Q ss_pred HHHHHHHHHh--ccCChHHHHHHHHHHHHcC---------CCCcHHHHHHHHHHH--HhcCCHHHHHHHHHhC
Q 040365 144 SFSSIMPACA--HLTTLHLGKQLHGCIIRNG---------FDDNMFIASSLLDMY--AKCGNIRLARCIFDKM 203 (514)
Q Consensus 144 t~~~ll~~~~--~~~~~~~a~~~~~~~~~~~---------~~~~~~~~~~li~~y--~k~g~~~~A~~~~~~m 203 (514)
.+..++.+.. +.+..+.+.+..+.+.... ..|-..++..+++.+ ...|+++.+...++++
T Consensus 179 v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 179 VLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555544 3344555666655553321 133455666665544 4567766665554443
No 348
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.66 E-value=1.7e+02 Score=32.21 Aligned_cols=39 Identities=0% Similarity=0.011 Sum_probs=24.5
Q ss_pred HHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 040365 115 AGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACA 153 (514)
Q Consensus 115 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 153 (514)
-.|......+-+..+++.+....-.++..-.+.++.-|.
T Consensus 599 l~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 599 LNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred HHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 345566677777777777776655556665566655554
No 349
>PRK11619 lytic murein transglycosylase; Provisional
Probab=69.66 E-value=1.6e+02 Score=31.47 Aligned_cols=95 Identities=9% Similarity=-0.073 Sum_probs=57.9
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-C--CCcchHHHHHHHHHHccChh
Q 040365 286 ADLLGRAGKLQEAYEFISNMHAGPTENVWLTLLSACRVHKNVELAGKVAEKIFMID-P--NNMGAYVILSNTYAAARRWK 362 (514)
Q Consensus 286 i~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-p--~~~~~~~~l~~~~~~~g~~~ 362 (514)
+..+...|...+|...+..+....+......+.......|..+.+.....+....+ . .-+..|.-.+..+++.-.++
T Consensus 414 a~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~ 493 (644)
T PRK11619 414 VRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIP 493 (644)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCC
Confidence 34566778888888777665444555556666666778888888877765543221 0 11234666777777666666
Q ss_pred HHHHHHHHHHhCCCccCC
Q 040365 363 DAASLRVFMRNKGMKKTP 380 (514)
Q Consensus 363 ~a~~~~~~m~~~g~~~~~ 380 (514)
.+.-.--...+.++.|..
T Consensus 494 ~~lv~ai~rqES~f~p~a 511 (644)
T PRK11619 494 QSYAMAIARQESAWNPKA 511 (644)
T ss_pred HHHHHHHHHHhcCCCCCC
Confidence 665433334466776654
No 350
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=69.14 E-value=1.2e+02 Score=29.69 Aligned_cols=100 Identities=16% Similarity=0.257 Sum_probs=74.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhcC--CCC-----
Q 040365 284 AVADLLGRAGKLQEAYEFISNMHAGPTENVWLTL------------LSACRVHKNVELAGKVAEKIFMID--PNN----- 344 (514)
Q Consensus 284 ~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~--p~~----- 344 (514)
.|...+-.+|++++|.+++.+.+. .||+++ +..|...+|+-.|.-+-+++...- .++
T Consensus 136 ~L~~ike~~Gdi~~Aa~il~el~V----ETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lK 211 (439)
T KOG1498|consen 136 MLAKIKEEQGDIAEAADILCELQV----ETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELK 211 (439)
T ss_pred HHHHHHHHcCCHHHHHHHHHhcch----hhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHH
Confidence 455667789999999999998873 344433 456888899999988888876532 222
Q ss_pred cchHHHHHHHHHHccChhHHHHHHHHHHhCCCccCCcccEEEE
Q 040365 345 MGAYVILSNTYAAARRWKDAASLRVFMRNKGMKKTPACSWIEV 387 (514)
Q Consensus 345 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~ 387 (514)
...|..++......+.+=++.+.++..-.-|-.+....-|+.+
T Consensus 212 lkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~v 254 (439)
T KOG1498|consen 212 LKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEV 254 (439)
T ss_pred HHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhh
Confidence 2468899999999999999999999998777665544456553
No 351
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.79 E-value=91 Score=28.23 Aligned_cols=56 Identities=14% Similarity=0.212 Sum_probs=33.9
Q ss_pred HHHhcCCHHHHHHHHHhCC---CCCCHHHHHH---HHH-H-HH-hcCCHHHHHHHHHHHHhcCCC
Q 040365 288 LLGRAGKLQEAYEFISNMH---AGPTENVWLT---LLS-A-CR-VHKNVELAGKVAEKIFMIDPN 343 (514)
Q Consensus 288 ~~~~~g~~~~A~~~~~~m~---~~p~~~~~~~---ll~-~-~~-~~~~~~~a~~~~~~~~~~~p~ 343 (514)
.-+..+++.+|.++|++.. ...+..-|.. ++. + |. -..|.-.+.+.+++..+++|.
T Consensus 163 yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 163 YAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPA 227 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCc
Confidence 3456788889999988763 1222222322 222 1 22 236777778888888888886
No 352
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=68.71 E-value=55 Score=30.40 Aligned_cols=87 Identities=18% Similarity=0.189 Sum_probs=56.5
Q ss_pred HHHHHhCCChHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHH--
Q 040365 215 IMGNALHGNAHDAISLFEQMEK--DGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLG-- 290 (514)
Q Consensus 215 i~~~~~~g~~~~A~~l~~~m~~--~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~-- 290 (514)
|.+++..|++.+++...-+--+ +.++|...-.. |-.|++.+....+.++-.......+ .-+...|..++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLC--ILLysKv~Ep~amlev~~~WL~~p~-Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELC--ILLYSKVQEPAAMLEVASAWLQDPS-NQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHH--HHHHHHhcCHHHHHHHHHHHHhCcc-cCCchhhHHHHHHHHHH
Confidence 6778888888888776554433 23455444333 3457888888888887776655422 223344777777664
Q ss_pred ---hcCCHHHHHHHHHh
Q 040365 291 ---RAGKLQEAYEFISN 304 (514)
Q Consensus 291 ---~~g~~~~A~~~~~~ 304 (514)
-.|.++||+++...
T Consensus 167 VLlPLG~~~eAeelv~g 183 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVVG 183 (309)
T ss_pred HHhccccHHHHHHHHhc
Confidence 46999999988843
No 353
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=68.68 E-value=46 Score=26.03 Aligned_cols=27 Identities=11% Similarity=0.337 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHH
Q 040365 109 SWNSIIAGCVQNGLFDEGLKFFRQMLI 135 (514)
Q Consensus 109 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 135 (514)
-|..|+.-|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 488899999999999999999998876
No 354
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=68.45 E-value=37 Score=27.24 Aligned_cols=60 Identities=12% Similarity=0.154 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHH
Q 040365 226 DAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVAD 287 (514)
Q Consensus 226 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 287 (514)
+..+-+..+....+-|+.......|.||.+.+++..|.++|+.+.. ...+....|..+++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~--K~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD--KCGAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH--hcccHHHHHHHHHH
Confidence 5555666666777889999999999999999999999999998844 34444445665554
No 355
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=68.32 E-value=73 Score=32.63 Aligned_cols=56 Identities=14% Similarity=0.154 Sum_probs=34.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCCC--Ch---hHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 040365 181 SSLLDMYAKCGNIRLARCIFDKMDLH--DI---VSWTAVIMGNALHGNAHDAISLFEQMEK 236 (514)
Q Consensus 181 ~~li~~y~k~g~~~~A~~~~~~m~~~--d~---~~~~~li~~~~~~g~~~~A~~l~~~m~~ 236 (514)
..|+.-|.+++++++|..++..|.-. .. .+.+.+.+.+.+..-..+....++.+..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 35777899999999999999998621 22 2334444444444434444444444443
No 356
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=68.06 E-value=69 Score=26.58 Aligned_cols=77 Identities=13% Similarity=0.241 Sum_probs=40.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC---------CCChhHHHHHHHHHHhCCC-hHHHHHHHHHHHHcCCCCCHHHHHHH
Q 040365 180 ASSLLDMYAKCGNIRLARCIFDKMD---------LHDIVSWTAVIMGNALHGN-AHDAISLFEQMEKDGVKPNSVAFVAV 249 (514)
Q Consensus 180 ~~~li~~y~k~g~~~~A~~~~~~m~---------~~d~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~l 249 (514)
.|+++.-...-+++.....+++.+. ..+-.+|.+++.+.++..- ---+..+|.-|++.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3455554455555555555544442 1233456666666544443 33445556666655556666666666
Q ss_pred HHHHHcc
Q 040365 250 LTACSHA 256 (514)
Q Consensus 250 l~a~~~~ 256 (514)
+.+|.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 6665544
No 357
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=67.63 E-value=16 Score=27.52 Aligned_cols=44 Identities=16% Similarity=0.268 Sum_probs=30.3
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHhCC
Q 040365 332 KVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRNKG 375 (514)
Q Consensus 332 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 375 (514)
..+++..+.+|+|...-..+...+...|++++|.+.+-.+.++.
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 34555566778887788888888888888888888777776653
No 358
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=67.50 E-value=1.1e+02 Score=30.26 Aligned_cols=53 Identities=9% Similarity=0.061 Sum_probs=33.6
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHH--ccCCHHHHHHHHHHhHH
Q 040365 218 NALHGNAHDAISLFEQMEKDGVKPNSV--AFVAVLTACS--HAGLIDKAWSYFNSMTK 271 (514)
Q Consensus 218 ~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~--~~g~~~~a~~~~~~m~~ 271 (514)
+.+.+++..|.++|+++... +.++.. .+..+..+|. ..-++++|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34678888888888888876 555444 2333334443 35567788888876644
No 359
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=67.15 E-value=4 Score=38.55 Aligned_cols=90 Identities=14% Similarity=0.170 Sum_probs=61.1
Q ss_pred hcCCHHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHH
Q 040365 291 RAGKLQEAYEFISNMH-AG-PTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLR 368 (514)
Q Consensus 291 ~~g~~~~A~~~~~~m~-~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 368 (514)
..|.+++|++.|.... .. |....|..=.+++.+.++...|++=+...++++|+....|-.-..+....|.|++|.+.+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 3456677776666543 22 334445555566777777777777777778888877777766666677778888888888
Q ss_pred HHHHhCCCccCC
Q 040365 369 VFMRNKGMKKTP 380 (514)
Q Consensus 369 ~~m~~~g~~~~~ 380 (514)
....+.++.+..
T Consensus 206 ~~a~kld~dE~~ 217 (377)
T KOG1308|consen 206 ALACKLDYDEAN 217 (377)
T ss_pred HHHHhccccHHH
Confidence 887777765544
No 360
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=66.61 E-value=1.7e+02 Score=30.63 Aligned_cols=171 Identities=8% Similarity=0.053 Sum_probs=88.9
Q ss_pred HHHHHHHccCCCC-ChhHHHHHHH----H-HHHCCChhHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHhccC---
Q 040365 93 EDSHRLFCLLPVK-DAISWNSIIA----G-CVQNGLFDEGLKFFRQMLI-------AKIKPRHVSFSSIMPACAHLT--- 156 (514)
Q Consensus 93 ~~A~~~f~~~~~~-d~~~~~~li~----~-~~~~g~~~~A~~l~~~m~~-------~g~~p~~~t~~~ll~~~~~~~--- 156 (514)
..|.+.++..... ++..-..+.. + +....+.+.|+..|+.+.. .| +......+..+|.+..
T Consensus 229 ~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 229 SEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCc
Confidence 4556666555432 3333222222 2 4455678888888888766 44 2223444455554432
Q ss_pred --ChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh-cCCHHHHHHHHHhCCCC-ChhHHHHHHHHHH----hCCChHHHH
Q 040365 157 --TLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAK-CGNIRLARCIFDKMDLH-DIVSWTAVIMGNA----LHGNAHDAI 228 (514)
Q Consensus 157 --~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k-~g~~~~A~~~~~~m~~~-d~~~~~~li~~~~----~~g~~~~A~ 228 (514)
+.+.|..++....+.| .|+....-..+..... ..+...|.++|...... .+.+.-.+...|. ...+...|.
T Consensus 306 ~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~ 384 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAF 384 (552)
T ss_pred cccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHH
Confidence 5566888888877777 4444443333322222 24567787777776532 2333222222222 233577777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHh
Q 040365 229 SLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSM 269 (514)
Q Consensus 229 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 269 (514)
.++++..+.| .|-..--...+..+.. +.++.+...+..+
T Consensus 385 ~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~ 423 (552)
T KOG1550|consen 385 AYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYL 423 (552)
T ss_pred HHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHH
Confidence 7787777776 3333333333334444 5555555555444
No 361
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=66.56 E-value=45 Score=24.83 Aligned_cols=66 Identities=9% Similarity=-0.003 Sum_probs=41.0
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHH
Q 040365 161 GKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMDLHDIVSWTAVIMGNALHGNAHDAI 228 (514)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~ 228 (514)
+.++++...+.|+- +....+.+-.+-.+.|+.+.|++++..++ +..-.|..+++++-..|...-|.
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 34555666665532 22222222222235678888888888888 77788888888888877765554
No 362
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.15 E-value=1.5e+02 Score=32.62 Aligned_cols=28 Identities=14% Similarity=0.443 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHC
Q 040365 109 SWNSIIAGCVQNGLFDEGLKFFRQMLIA 136 (514)
Q Consensus 109 ~~~~li~~~~~~g~~~~A~~l~~~m~~~ 136 (514)
-|..|+..|...|+.++|++++.+....
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 3788999999999999999999998663
No 363
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=65.47 E-value=54 Score=25.65 Aligned_cols=27 Identities=11% Similarity=0.219 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHH
Q 040365 210 SWTAVIMGNALHGNAHDAISLFEQMEK 236 (514)
Q Consensus 210 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 236 (514)
-|..++.-|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 477788888888888888888888766
No 364
>PHA02875 ankyrin repeat protein; Provisional
Probab=64.43 E-value=96 Score=30.92 Aligned_cols=194 Identities=18% Similarity=0.162 Sum_probs=96.9
Q ss_pred CCCChHHHHHHHHHHHHhCCCCchhH--HHHHHHHHHHCCCHHHHHHHHccCCCCChh--HHHHHHHHHHHCCChhHHHH
Q 040365 53 DYVDVIKGKEIHGYAIRHGLDANVCI--GSSLINMYAKCARVEDSHRLFCLLPVKDAI--SWNSIIAGCVQNGLFDEGLK 128 (514)
Q Consensus 53 ~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~f~~~~~~d~~--~~~~li~~~~~~g~~~~A~~ 128 (514)
..|+.+ +.+.+++.|..++... ..+.+...++.|+.+-+.-+++.-..++.. ...+.+...+..|+.+.+..
T Consensus 11 ~~g~~~----iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~ 86 (413)
T PHA02875 11 LFGELD----IARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEE 86 (413)
T ss_pred HhCCHH----HHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHH
Confidence 445554 3445556776665432 345566677888888777777654333221 11223445567787776555
Q ss_pred HHHHHHHCCCCCCHH---HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHHH--HHHHHHHHHhcCCHHHHHHHHHhC
Q 040365 129 FFRQMLIAKIKPRHV---SFSSIMPACAHLTTLHLGKQLHGCIIRNGFDDNMFI--ASSLLDMYAKCGNIRLARCIFDKM 203 (514)
Q Consensus 129 l~~~m~~~g~~p~~~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~y~k~g~~~~A~~~~~~m 203 (514)
+++ .|...+.. .-.+.+...+..|+.+ +.+.+++.|..++... ..+.+...+..|+.+-+..+++.-
T Consensus 87 Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g 158 (413)
T PHA02875 87 LLD----LGKFADDVFYKDGMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHK 158 (413)
T ss_pred HHH----cCCcccccccCCCCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence 543 33211110 0112333344455554 4445556665554321 223445566778887777777654
Q ss_pred CCC---ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHccCCHHHHH
Q 040365 204 DLH---DIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAF---VAVLTACSHAGLIDKAW 263 (514)
Q Consensus 204 ~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~ 263 (514)
... |..-++.+..+ +..|+.+ +.+.+.+.|..|+...- .+++......|..+-+.
T Consensus 159 ~~~~~~d~~g~TpL~~A-~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~ 219 (413)
T PHA02875 159 ACLDIEDCCGCTPLIIA-MAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVR 219 (413)
T ss_pred CCCCCCCCCCCCHHHHH-HHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHH
Confidence 322 33333333333 3445543 44555666776654321 23344334456654443
No 365
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=64.24 E-value=1.9e+02 Score=30.30 Aligned_cols=181 Identities=15% Similarity=0.103 Sum_probs=102.8
Q ss_pred HHHHHHHHHhCCCC-ChhHHHHHHHH-----HHhCCChHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHccC--
Q 040365 193 IRLARCIFDKMDLH-DIVSWTAVIMG-----NALHGNAHDAISLFEQMEK-------DGVKPNSVAFVAVLTACSHAG-- 257 (514)
Q Consensus 193 ~~~A~~~~~~m~~~-d~~~~~~li~~-----~~~~g~~~~A~~l~~~m~~-------~g~~p~~~t~~~ll~a~~~~g-- 257 (514)
...|.+.++..... ++..-..+... +....+.+.|+.+|+.+.+ .| +......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 45666666666533 33333333222 4455678888888888766 44 2234455666666543
Q ss_pred ---CHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHh-cCCHHHHHHHHHhCCCCCCHHHHHHHHHHH----HhcCCHHH
Q 040365 258 ---LIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGR-AGKLQEAYEFISNMHAGPTENVWLTLLSAC----RVHKNVEL 329 (514)
Q Consensus 258 ---~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~----~~~~~~~~ 329 (514)
+.+.|..++..... .| .|+....-..+-..+. ..+...|.++|...-..-.....-.+...+ ....+.+.
T Consensus 305 ~~~d~~~A~~~~~~aA~-~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~ 382 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAE-LG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLEL 382 (552)
T ss_pred ccccHHHHHHHHHHHHh-cC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHH
Confidence 56668888877643 23 3344333333322233 245778888888765443333333332222 23457888
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHhCCCccC
Q 040365 330 AGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRNKGMKKT 379 (514)
Q Consensus 330 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~ 379 (514)
|...++++-+.++..+..-......+.. ++++.+.-.+..+.+.|..-.
T Consensus 383 A~~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~ 431 (552)
T KOG1550|consen 383 AFAYYKKAAEKGNPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVA 431 (552)
T ss_pred HHHHHHHHHHccChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHH
Confidence 9999999888884322222233333344 888888888888887776533
No 366
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=63.51 E-value=1e+02 Score=26.92 Aligned_cols=59 Identities=14% Similarity=0.164 Sum_probs=43.5
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCC--------------CCcHHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 040365 146 SSIMPACAHLTTLHLGKQLHGCIIRNGF--------------DDNMFIASSLLDMYAKCGNIRLARCIFDKMD 204 (514)
Q Consensus 146 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~--------------~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~ 204 (514)
.+++..|.+.-++.+++++++.+-+..+ .+--.+.|.-...+.++|++|.|..++++-.
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLrese 208 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRESE 208 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhccc
Confidence 3566677888888888888888765422 3345566777888889999999988887543
No 367
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.25 E-value=1.2e+02 Score=27.55 Aligned_cols=23 Identities=13% Similarity=0.014 Sum_probs=17.5
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCC
Q 040365 322 RVHKNVELAGKVAEKIFMIDPNN 344 (514)
Q Consensus 322 ~~~~~~~~a~~~~~~~~~~~p~~ 344 (514)
...+++..|+.+|+++....-+|
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 56788899999999987755443
No 368
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=63.02 E-value=15 Score=20.69 Aligned_cols=29 Identities=17% Similarity=0.285 Sum_probs=21.3
Q ss_pred CCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 040365 325 KNVELAGKVAEKIFMIDPNNMGAYVILSN 353 (514)
Q Consensus 325 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 353 (514)
|+.+.+..+|++++...|.++..|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 46677888888888887877777766554
No 369
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=62.65 E-value=77 Score=31.78 Aligned_cols=127 Identities=14% Similarity=0.158 Sum_probs=85.7
Q ss_pred ccCCHHHHH-HHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHH
Q 040365 255 HAGLIDKAW-SYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISNMH--AGPTENVWLTLLSACRVHKNVELAG 331 (514)
Q Consensus 255 ~~g~~~~a~-~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~ 331 (514)
..|++-.|- +++..+ +.+.-.|+... .....+...|.++.+...+.... ......+...++......|+.++|.
T Consensus 301 ~~gd~~aas~~~~~~l-r~~~~~p~~i~--l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 301 ADGDIIAASQQLFAAL-RNQQQDPVLIQ--LRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hccCHHHHHHHHHHHH-HhCCCCchhhH--HHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 456666554 455544 44444454333 33344677899999999987663 2244567788899999999999999
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHhCCCccCCcccEEE
Q 040365 332 KVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRNKGMKKTPACSWIE 386 (514)
Q Consensus 332 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~ 386 (514)
...+.|+..+-.++......+..--..|-++++...++++..-. |+....|+-
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~--~~~~~g~v~ 430 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLN--PETQSGWVN 430 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccC--Chhccccee
Confidence 99999998776665555554555556778899999998886544 333335653
No 370
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=62.33 E-value=25 Score=25.55 Aligned_cols=45 Identities=7% Similarity=-0.010 Sum_probs=30.2
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcc---hHHHHHHHHHHccChhHHHHH
Q 040365 323 VHKNVELAGKVAEKIFMIDPNNMG---AYVILSNTYAAARRWKDAASL 367 (514)
Q Consensus 323 ~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~ 367 (514)
...+.+.|+..++++++..++.+. ++..|+.+|+..|++.++++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567778888887776544333 444667778888888877664
No 371
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=62.30 E-value=2e+02 Score=29.84 Aligned_cols=121 Identities=8% Similarity=-0.066 Sum_probs=58.7
Q ss_pred hhHHHHHHHHHHHCCCHHHHHHHHccCCCCC---hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040365 76 VCIGSSLINMYAKCARVEDSHRLFCLLPVKD---AISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPAC 152 (514)
Q Consensus 76 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~d---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 152 (514)
..+|+.-++.-.+.|+.+.+.-+|++...|- ...|--.+.-.-..|+.+-|-.++..-.+--++-.+.+-..-...+
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~ 376 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFE 376 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH
Confidence 3456666666666666666666666654331 1123333333333366666655555444433322222222222233
Q ss_pred hccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 040365 153 AHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLAR 197 (514)
Q Consensus 153 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~ 197 (514)
-..|++..|+.+++.+...- +.-+.+-.--+.+-.+.|..+.+.
T Consensus 377 e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 377 ESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhh
Confidence 44566666666666665543 222222233344555556665555
No 372
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=62.07 E-value=59 Score=28.63 Aligned_cols=57 Identities=14% Similarity=0.109 Sum_probs=31.7
Q ss_pred HHHHHCCChhHHHHHHHHHHHCCCCCCHH-----HHHHHHHHHhccCChHHHHHHHHHHHHcC
Q 040365 115 AGCVQNGLFDEGLKFFRQMLIAKIKPRHV-----SFSSIMPACAHLTTLHLGKQLHGCIIRNG 172 (514)
Q Consensus 115 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 172 (514)
+-+.++|++++|..-|.+.+.. ++|... .|..-..+..+++..+.|..-....++.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~ 164 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN 164 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC
Confidence 4456788888888888887764 333322 22222334445555555555555555443
No 373
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=61.47 E-value=1.9e+02 Score=29.45 Aligned_cols=159 Identities=13% Similarity=0.084 Sum_probs=106.0
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 040365 106 DAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLD 185 (514)
Q Consensus 106 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 185 (514)
|....-+++..+.++..+.-...+-.+|...| .+...|..++..|... ..++-..+++++++..+ .|++...-|.+
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHH
Confidence 55566678888999888888888999998865 5778888899998887 66777888888888764 35555666777
Q ss_pred HHHhcCCHHHHHHHHHhCCCC------Ch---hHHHHHHHHHHhCCChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHc
Q 040365 186 MYAKCGNIRLARCIFDKMDLH------DI---VSWTAVIMGNALHGNAHDAISLFEQMEK-DGVKPNSVAFVAVLTACSH 255 (514)
Q Consensus 186 ~y~k~g~~~~A~~~~~~m~~~------d~---~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~ll~a~~~ 255 (514)
-|-+ ++.+.+...|.+...+ +. ..|.-++..- ..+.+..+.+..+... .|..--.+.+--+-.-|+.
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 7776 8888888888776421 11 2455554321 2345555555555544 2333334445555556666
Q ss_pred cCCHHHHHHHHHHhHH
Q 040365 256 AGLIDKAWSYFNSMTK 271 (514)
Q Consensus 256 ~g~~~~a~~~~~~m~~ 271 (514)
..++++|++++..+.+
T Consensus 218 ~eN~~eai~Ilk~il~ 233 (711)
T COG1747 218 NENWTEAIRILKHILE 233 (711)
T ss_pred ccCHHHHHHHHHHHhh
Confidence 6777777777766643
No 374
>PRK13342 recombination factor protein RarA; Reviewed
Probab=61.12 E-value=1.8e+02 Score=29.06 Aligned_cols=44 Identities=18% Similarity=0.208 Sum_probs=28.7
Q ss_pred HHHHHHHHHHH---CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040365 109 SWNSIIAGCVQ---NGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPAC 152 (514)
Q Consensus 109 ~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 152 (514)
.+..+++++.+ .++++.|+..+.+|.+.|..|....-..+..++
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 34445555554 478888888888888888777655544444443
No 375
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=60.88 E-value=87 Score=29.14 Aligned_cols=84 Identities=10% Similarity=-0.046 Sum_probs=44.3
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHCCCHHHHHHHHccCC----CCChhHHHHHHHHHH----
Q 040365 47 VLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSSLINMYAKCARVEDSHRLFCLLP----VKDAISWNSIIAGCV---- 118 (514)
Q Consensus 47 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~----~~d~~~~~~li~~~~---- 118 (514)
=|++++..+++.++....-+--..--+....+...-|-.|+|.|....+.++-..-. ..+...|.+++..|.
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 366777777776654332222111111122334444556777777766665543321 234445666555544
Q ss_pred -HCCChhHHHHHH
Q 040365 119 -QNGLFDEGLKFF 130 (514)
Q Consensus 119 -~~g~~~~A~~l~ 130 (514)
-.|.+++|.++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 367888887766
No 376
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=60.24 E-value=4.1e+02 Score=32.82 Aligned_cols=149 Identities=13% Similarity=0.089 Sum_probs=87.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCCC-CChhhHHHHHH-HHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHH
Q 040365 11 TVIVGLARNGLYEEALNIVRQMGNVNLK-PDSFTLSSVLP-IFADYVDVIKGKEIHGYAIRHGLDANVCIGSSLINMYAK 88 (514)
Q Consensus 11 ~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~-~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 88 (514)
++..+--+.+.+.+|+-.++.-.....+ .-...+..++. .|+..++++...-+..... .+..++ ..|-....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~-----a~~sl~-~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRF-----ADPSLY-QQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh-----cCccHH-HHHHHHHh
Confidence 3444556678888888888873111111 11223444444 8889999988777665411 122222 34555677
Q ss_pred CCCHHHHHHHHccCCCC--C-hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHH-HHHHhccCChHHHHHH
Q 040365 89 CARVEDSHRLFCLLPVK--D-AISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSI-MPACAHLTTLHLGKQL 164 (514)
Q Consensus 89 ~g~~~~A~~~f~~~~~~--d-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-l~~~~~~~~~~~a~~~ 164 (514)
.|++.+|...|+.+.+. + ..+++-++......|.++.++...+-.... ..+....++++ +.+-=+.++++.....
T Consensus 1462 ~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred hccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhh
Confidence 89999999999999853 3 456777777766777777777655544433 23333333322 2233455666666655
Q ss_pred HH
Q 040365 165 HG 166 (514)
Q Consensus 165 ~~ 166 (514)
+.
T Consensus 1541 l~ 1542 (2382)
T KOG0890|consen 1541 LS 1542 (2382)
T ss_pred hh
Confidence 54
No 377
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.89 E-value=11 Score=40.33 Aligned_cols=77 Identities=16% Similarity=0.258 Sum_probs=55.0
Q ss_pred HHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 040365 249 VLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISNMHAGPTENVWLTLLSACRVHKNVE 328 (514)
Q Consensus 249 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~ 328 (514)
+|..+.+.|-.+-|+.+.+.-..++ .+...+|+++.|++.-.... |..+|..|.......|+.+
T Consensus 626 iIaYLqKkgypeiAL~FVkD~~tRF-------------~LaLe~gnle~ale~akkld---d~d~w~rLge~Al~qgn~~ 689 (1202)
T KOG0292|consen 626 IIAYLQKKGYPEIALHFVKDERTRF-------------ELALECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNHQ 689 (1202)
T ss_pred HHHHHHhcCCcceeeeeecCcchhe-------------eeehhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcchH
Confidence 4555566677766666654332222 23457899999988877765 7788999999999999999
Q ss_pred HHHHHHHHHHhcC
Q 040365 329 LAGKVAEKIFMID 341 (514)
Q Consensus 329 ~a~~~~~~~~~~~ 341 (514)
.|+..+++....+
T Consensus 690 IaEm~yQ~~knfe 702 (1202)
T KOG0292|consen 690 IAEMCYQRTKNFE 702 (1202)
T ss_pred HHHHHHHHhhhhh
Confidence 9999988865543
No 378
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=59.51 E-value=1.5e+02 Score=27.65 Aligned_cols=230 Identities=12% Similarity=0.064 Sum_probs=0.0
Q ss_pred CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-------hhhHHHHHHHHhCCCChHHHHHHHHHHHHh---
Q 040365 1 MPVSDLVSWNTVIVGLARNGLYEEALNIVRQMGNVNLKPD-------SFTLSSVLPIFADYVDVIKGKEIHGYAIRH--- 70 (514)
Q Consensus 1 m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--- 70 (514)
|..|.. -.+..-.++.+++++|+..+.+....|+..| ..|...+.+.|...|+...-.+......+.
T Consensus 1 ms~~~s---le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ 77 (421)
T COG5159 1 MSSKSS---LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMED 77 (421)
T ss_pred CCCcch---HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHH
Q ss_pred -CCCCchhHHHHHHHHHHHCCC-HHHHHHHHccCCCC---------ChhHHHHHHHHHHHCCChhHHHH----HHHHHHH
Q 040365 71 -GLDANVCIGSSLINMYAKCAR-VEDSHRLFCLLPVK---------DAISWNSIIAGCVQNGLFDEGLK----FFRQMLI 135 (514)
Q Consensus 71 -g~~~~~~~~~~li~~~~~~g~-~~~A~~~f~~~~~~---------d~~~~~~li~~~~~~g~~~~A~~----l~~~m~~ 135 (514)
.-+....+..+|+..+....+ ++.-.++.....+. -...-.-+|..+.+.|.+.+|+. ++.++.+
T Consensus 78 ftk~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk 157 (421)
T COG5159 78 FTKPKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKK 157 (421)
T ss_pred hcchhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Q ss_pred CCCCCCHHHHHHHHH-HHhccCChHHHHHHHHHHHHcC----CCCcHHHHHHHHHHHHhcCC--HHHHHHHHHhCCCCCh
Q 040365 136 AKIKPRHVSFSSIMP-ACAHLTTLHLGKQLHGCIIRNG----FDDNMFIASSLLDMYAKCGN--IRLARCIFDKMDLHDI 208 (514)
Q Consensus 136 ~g~~p~~~t~~~ll~-~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~li~~y~k~g~--~~~A~~~~~~m~~~d~ 208 (514)
-.-+|+..+...+=+ +|-...++.+++.-+....... .||-....--|+++-..|.+ +..|...|-+.
T Consensus 158 ~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea----- 232 (421)
T COG5159 158 YDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEA----- 232 (421)
T ss_pred hcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHH-----
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH
Q 040365 209 VSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSV 244 (514)
Q Consensus 209 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 244 (514)
..+|.....-.+|...++-|.-..+..|..
T Consensus 233 ------~Egft~l~~d~kAc~sLkYmlLSkIMlN~~ 262 (421)
T COG5159 233 ------LEGFTLLKMDVKACVSLKYMLLSKIMLNRR 262 (421)
T ss_pred ------HhccccccchHHHHHHHHHHHHHHHHHhhH
No 379
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=59.45 E-value=29 Score=25.28 Aligned_cols=47 Identities=15% Similarity=0.140 Sum_probs=25.7
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCC-HhHHHHHHHHHHhcCCHHHHHHH
Q 040365 255 HAGLIDKAWSYFNSMTKDYGIAPS-FEHYAAVADLLGRAGKLQEAYEF 301 (514)
Q Consensus 255 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~ 301 (514)
+...-++|+..|....++..-.|+ -.+..+|+.+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666666666554222222 24455666666666666666554
No 380
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=59.35 E-value=72 Score=28.54 Aligned_cols=53 Identities=13% Similarity=0.082 Sum_probs=22.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCChHHHHHHH
Q 040365 11 TVIVGLARNGLYEEALNIVRQMGNVNLKPDSFTLSSVLPIFADYVDVIKGKEIH 64 (514)
Q Consensus 11 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 64 (514)
.-|+.+.+.+...+|+.+.+.=.+.. +.|..+-..+++.++-.|++++|..-+
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql 58 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQL 58 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHH
Confidence 33444444455555554444443332 222233344444444445554444333
No 381
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=59.22 E-value=24 Score=22.44 Aligned_cols=22 Identities=5% Similarity=0.229 Sum_probs=11.0
Q ss_pred HHHHHHCCChhHHHHHHHHHHH
Q 040365 114 IAGCVQNGLFDEGLKFFRQMLI 135 (514)
Q Consensus 114 i~~~~~~g~~~~A~~l~~~m~~ 135 (514)
..+|...|+.+.|.+++++...
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHHH
Confidence 3445555555555555555443
No 382
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=58.91 E-value=2.2e+02 Score=29.15 Aligned_cols=158 Identities=12% Similarity=0.132 Sum_probs=66.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCC--CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 040365 181 SSLLDMYAKCGNIRLARCIFDKMD--LHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGL 258 (514)
Q Consensus 181 ~~li~~y~k~g~~~~A~~~~~~m~--~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 258 (514)
-++++.++..-...-.+-+-.+|. ..+-..+..++..|.++ ..+.-..+|+++.+.. -|.+.+..-+.-+...++
T Consensus 70 ~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~d--fnDvv~~ReLa~~yEkik 146 (711)
T COG1747 70 VTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYD--FNDVVIGRELADKYEKIK 146 (711)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--chhHHHHHHHHHHHHHhc
Confidence 344444444444444444444443 23344455555555555 3444555555555432 233333333333333355
Q ss_pred HHHHHHHHHHhHHhcCCCCC------HhHHHHHHHHHHhcCCHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCCHH
Q 040365 259 IDKAWSYFNSMTKDYGIAPS------FEHYAAVADLLGRAGKLQEAYEFISNMH----AGPTENVWLTLLSACRVHKNVE 328 (514)
Q Consensus 259 ~~~a~~~~~~m~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p~~~~~~~ll~~~~~~~~~~ 328 (514)
.+.+..+|..+.. .+-|. .+.|.-|+..- ..+.+.-+.+...+. ...-.+.+.-+-.-|....|+.
T Consensus 147 ~sk~a~~f~Ka~y--rfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~ 222 (711)
T COG1747 147 KSKAAEFFGKALY--RFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWT 222 (711)
T ss_pred hhhHHHHHHHHHH--HhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHH
Confidence 5555555555432 22221 12333333211 122333333333322 1112233333334455555666
Q ss_pred HHHHHHHHHHhcCCCCc
Q 040365 329 LAGKVAEKIFMIDPNNM 345 (514)
Q Consensus 329 ~a~~~~~~~~~~~p~~~ 345 (514)
+|++++..+++++..|.
T Consensus 223 eai~Ilk~il~~d~k~~ 239 (711)
T COG1747 223 EAIRILKHILEHDEKDV 239 (711)
T ss_pred HHHHHHHHHhhhcchhh
Confidence 66666665555554443
No 383
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=58.25 E-value=13 Score=30.17 Aligned_cols=31 Identities=23% Similarity=0.261 Sum_probs=20.1
Q ss_pred cCChhHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 040365 19 NGLYEEALNIVRQMGNVNLKPDSFTLSSVLPIF 51 (514)
Q Consensus 19 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 51 (514)
.|.-.+|..+|+.|+..|-+|| .|+.|+..+
T Consensus 108 ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 3555667777888887777776 355555543
No 384
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=58.14 E-value=1.7e+02 Score=27.80 Aligned_cols=84 Identities=17% Similarity=0.042 Sum_probs=58.8
Q ss_pred CHHHHHHHHHHhHHhcCC---CCCHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 040365 258 LIDKAWSYFNSMTKDYGI---APSFEHYAAVADLLGRAGKLQEAYEFISNMHAGPTENVWLTLLSACRVHKNVELAGKVA 334 (514)
Q Consensus 258 ~~~~a~~~~~~m~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 334 (514)
-.++|.+.|+.......- ..++.....+.....+.|..++-..+++.....++...-..++.+.....+.+...+++
T Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l 224 (324)
T PF11838_consen 145 CVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLL 224 (324)
T ss_dssp HHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHH
Confidence 357788888887653111 34566667777777888887776667766665678888899999999999999999999
Q ss_pred HHHHhcC
Q 040365 335 EKIFMID 341 (514)
Q Consensus 335 ~~~~~~~ 341 (514)
+.++.-+
T Consensus 225 ~~~l~~~ 231 (324)
T PF11838_consen 225 DLLLSND 231 (324)
T ss_dssp HHHHCTS
T ss_pred HHHcCCc
Confidence 9988843
No 385
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=57.60 E-value=2.2e+02 Score=28.92 Aligned_cols=73 Identities=12% Similarity=0.094 Sum_probs=49.2
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHH-HhCCCChHHHHHHHHHHHHhCCCCchhHH
Q 040365 5 DLVSWNTVIVGLARNGLYEEALNIVRQMGNVNLKPDSFTLSSVLPI-FADYVDVIKGKEIHGYAIRHGLDANVCIG 79 (514)
Q Consensus 5 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 79 (514)
|+..|...|..+-+.+.+.+.-.+|.+|.... +.++..|.....- +-...+++.|++++...++.. +.++..|
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n-pdsp~Lw 177 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN-PDSPKLW 177 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC-CCChHHH
Confidence 88899999988888888999999999998742 2233344333322 223334888999988887764 3333443
No 386
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.18 E-value=1.3e+02 Score=25.98 Aligned_cols=86 Identities=26% Similarity=0.219 Sum_probs=50.7
Q ss_pred HHhcCCHHHHHHHHHhCCCC----Chh-HHHHHHH--HHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 040365 187 YAKCGNIRLARCIFDKMDLH----DIV-SWTAVIM--GNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLI 259 (514)
Q Consensus 187 y~k~g~~~~A~~~~~~m~~~----d~~-~~~~li~--~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 259 (514)
....|+-..|...|+++... -+. -...+=. .+..+|-+++.....+.+-..|-+--...-..|.-+-.+.|++
T Consensus 104 ~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~ 183 (221)
T COG4649 104 LAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDF 183 (221)
T ss_pred HhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccch
Confidence 45566777777777766421 111 1111112 2346777877777666665444333334445666677788888
Q ss_pred HHHHHHHHHhHHh
Q 040365 260 DKAWSYFNSMTKD 272 (514)
Q Consensus 260 ~~a~~~~~~m~~~ 272 (514)
..|.+.|..+..+
T Consensus 184 a~A~~~F~qia~D 196 (221)
T COG4649 184 AKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHHHHHHcc
Confidence 8888888888665
No 387
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=56.76 E-value=94 Score=25.08 Aligned_cols=42 Identities=7% Similarity=0.018 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhcC--CCCcchHHHHHHHHHHccChhHHHHHHHH
Q 040365 329 LAGKVAEKIFMID--PNNMGAYVILSNTYAAARRWKDAASLRVF 370 (514)
Q Consensus 329 ~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 370 (514)
.+..+|+.|...+ ...+..|..-+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 7888888887654 66778899999999999999999999874
No 388
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=56.04 E-value=50 Score=28.90 Aligned_cols=35 Identities=20% Similarity=0.157 Sum_probs=19.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 040365 308 GPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDP 342 (514)
Q Consensus 308 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 342 (514)
.|+..++..++.++...|+.++|.+..+++..+-|
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 35555555555555555555555555555555555
No 389
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=55.81 E-value=2.8e+02 Score=29.50 Aligned_cols=48 Identities=13% Similarity=-0.027 Sum_probs=33.9
Q ss_pred HhcCCHHHHHHHHHHHHhcC---CC------CcchHHHHHHHHHHccChhHHHHHHH
Q 040365 322 RVHKNVELAGKVAEKIFMID---PN------NMGAYVILSNTYAAARRWKDAASLRV 369 (514)
Q Consensus 322 ~~~~~~~~a~~~~~~~~~~~---p~------~~~~~~~l~~~~~~~g~~~~a~~~~~ 369 (514)
...+++..|....+.+.+.. |+ .+..+...+-.+-..|+.+.|...|.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 56788888999888887643 22 13334444555667799999999997
No 390
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=55.41 E-value=2.1e+02 Score=27.87 Aligned_cols=124 Identities=17% Similarity=0.151 Sum_probs=74.1
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCC-----CCcHHHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCChh----
Q 040365 146 SSIMPACAHLTTLHLGKQLHGCIIRNGF-----DDNMFIASSLLDMYAKCGNIRLARCIFDKM-------DLHDIV---- 209 (514)
Q Consensus 146 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~y~k~g~~~~A~~~~~~m-------~~~d~~---- 209 (514)
.++-.+....+.++++.+.|+...+... -....++-+|...|.+..|+++|.-+..+. .-.|..
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence 3456667777778888888877665321 123567788888888888888775443332 223332
Q ss_pred --HHHHHHHHHHhCCChHHHHHHHHHHHH----cCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHh
Q 040365 210 --SWTAVIMGNALHGNAHDAISLFEQMEK----DGVKPNS-VAFVAVLTACSHAGLIDKAWSYFNSM 269 (514)
Q Consensus 210 --~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m 269 (514)
+...|.-++-..|+..+|.+.-++..+ .|-+|-. .....+.+.|...|+.|.|+.-|+..
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 223344556667777777666665433 3433322 23445666677777777776666544
No 391
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=54.49 E-value=1.8e+02 Score=26.94 Aligned_cols=81 Identities=19% Similarity=0.180 Sum_probs=48.9
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHH-HHHHHHH
Q 040365 278 SFEHYAAVADLLGRAGKLQEAYEFISNMHAGPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYV-ILSNTYA 356 (514)
Q Consensus 278 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~-~l~~~~~ 356 (514)
++.....+...|.+.|++.+|+..|---. .|+...+..++.-....|. |.+...|. ..+--|.
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~-~~~~~~~~~ll~~~~~~~~---------------~~e~dlfi~RaVL~yL 152 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGT-DPSAFAYVMLLEEWSTKGY---------------PSEADLFIARAVLQYL 152 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS--HHHHHHHHHHHHHHHHHTS---------------S--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcC-ChhHHHHHHHHHHHHHhcC---------------CcchhHHHHHHHHHHH
Confidence 67788888999999999999988774332 2223222223332222232 33333433 3455678
Q ss_pred HccChhHHHHHHHHHHhC
Q 040365 357 AARRWKDAASLRVFMRNK 374 (514)
Q Consensus 357 ~~g~~~~a~~~~~~m~~~ 374 (514)
..|+...|...++...++
T Consensus 153 ~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HTTBHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 889999999998888765
No 392
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=53.79 E-value=81 Score=23.53 Aligned_cols=66 Identities=5% Similarity=0.043 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHHCCCHHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHH
Q 040365 60 GKEIHGYAIRHGLDANVCIGSSLINMYAKCARVEDSHRLFCLLPVKDAISWNSIIAGCVQNGLFDEGL 127 (514)
Q Consensus 60 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~ 127 (514)
+.+++..+++.|+-.+. -...+-.+-...|+.+.|+++++.++ +.+-.|...+.++...|.-+-|.
T Consensus 21 ~~~v~d~ll~~~ilT~~-d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLLTEE-DRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCCCHH-HHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 44566666666632221 22222222224577888888888888 77777888888887777655543
No 393
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=53.33 E-value=44 Score=31.37 Aligned_cols=48 Identities=17% Similarity=0.147 Sum_probs=29.0
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHH
Q 040365 322 RVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRV 369 (514)
Q Consensus 322 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 369 (514)
.+.|+.++|..+|+.++.+.|.++....-+........+.-+|.+++-
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~ 174 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYV 174 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhh
Confidence 456667777777777777777766665555554444445555555443
No 394
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=52.04 E-value=16 Score=29.58 Aligned_cols=32 Identities=28% Similarity=0.497 Sum_probs=25.0
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 040365 220 LHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTAC 253 (514)
Q Consensus 220 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 253 (514)
..|.-.+|..+|++|+..|-+||. |+.|+.++
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 346667899999999999999985 56666554
No 395
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=50.91 E-value=1.5e+02 Score=26.62 Aligned_cols=92 Identities=22% Similarity=0.329 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC---CHHHH--HHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHH
Q 040365 210 SWTAVIMGNALHGNAHDAISLFEQMEKDGVKP---NSVAF--VAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAA 284 (514)
Q Consensus 210 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~--~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 284 (514)
-.|.||--|.-+..+.+|.+.|.. +.|+.| |..++ ..-+......|++++|++..+.+... -+.-|...+-.
T Consensus 28 d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pe-iLd~n~~l~F~ 104 (228)
T KOG2659|consen 28 DLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPE-ILDTNRELFFH 104 (228)
T ss_pred hHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChH-HHccchhHHHH
Confidence 344555555555455555555543 233443 22222 23344456667777777766655322 22223222222
Q ss_pred HHH----HHHhcCCHHHHHHHHHh
Q 040365 285 VAD----LLGRAGKLQEAYEFISN 304 (514)
Q Consensus 285 li~----~~~~~g~~~~A~~~~~~ 304 (514)
|.. -+.|.|..++|+++.+.
T Consensus 105 Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 105 LQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHH
Confidence 211 14577778888887765
No 396
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=49.88 E-value=27 Score=24.08 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=10.4
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q 040365 213 AVIMGNALHGNAHDAISLFEQME 235 (514)
Q Consensus 213 ~li~~~~~~g~~~~A~~l~~~m~ 235 (514)
.+|.||.+.|++++|.++.+++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34444445555555544444443
No 397
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=49.68 E-value=2.6e+02 Score=27.38 Aligned_cols=64 Identities=13% Similarity=0.171 Sum_probs=51.3
Q ss_pred CHHHHHHH---HHHHHhcCCHHHHHHHHHHHHhcCCC-CcchHHHHHHHHH-HccChhHHHHHHHHHHh
Q 040365 310 TENVWLTL---LSACRVHKNVELAGKVAEKIFMIDPN-NMGAYVILSNTYA-AARRWKDAASLRVFMRN 373 (514)
Q Consensus 310 ~~~~~~~l---l~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~ 373 (514)
|...|.+| +..+.+.|-+..|.+..+-++.++|. |+..-...++.|+ ++++++--.++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 55556655 55778999999999999999999998 8877778888875 67788888888877654
No 398
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=49.62 E-value=1.5e+02 Score=25.62 Aligned_cols=29 Identities=38% Similarity=0.437 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHcCCCCCH-HHHHHHHHHHHcc
Q 040365 226 DAISLFEQMEKDGVKPNS-VAFVAVLTACSHA 256 (514)
Q Consensus 226 ~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~ 256 (514)
+|+.-|++.+. +.|+. .++..+..++...
T Consensus 53 dAisK~eeAL~--I~P~~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 53 DAISKFEEALK--INPNKHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHH--H-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--cCCchHHHHHHHHHHHHHH
Confidence 44444444444 45654 5566666665543
No 399
>PHA03100 ankyrin repeat protein; Provisional
Probab=49.46 E-value=3e+02 Score=27.98 Aligned_cols=16 Identities=6% Similarity=-0.008 Sum_probs=10.2
Q ss_pred hhHHHHHHHHHHhCCC
Q 040365 361 WKDAASLRVFMRNKGM 376 (514)
Q Consensus 361 ~~~a~~~~~~m~~~g~ 376 (514)
.++..+-.+.|+.-.+
T Consensus 364 ~~~C~~ei~~mk~~~i 379 (480)
T PHA03100 364 INECEKEIERMKEIKL 379 (480)
T ss_pred HHHHHHHHHHHHhcEE
Confidence 4455666777777665
No 400
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=49.34 E-value=2.9e+02 Score=27.70 Aligned_cols=194 Identities=11% Similarity=0.039 Sum_probs=93.3
Q ss_pred HHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCC
Q 040365 95 SHRLFCLLPVKDAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLGKQLHGCIIRNGFD 174 (514)
Q Consensus 95 A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 174 (514)
...+.+.+..++.........++...+...-. ..+..+.+. ++...-.+.+.++...+. + +.......++ .
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~-~~L~~~L~~---~~p~vR~aal~al~~r~~-~-~~~~L~~~L~---d 158 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLGGRQAE-PWLEPLLAA---SEPPGRAIGLAALGAHRH-D-PGPALEAALT---H 158 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCCchHHH-HHHHHHhcC---CChHHHHHHHHHHHhhcc-C-hHHHHHHHhc---C
Confidence 44444444445554555556666555544333 223333321 233333344455544331 1 1222222222 4
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 040365 175 DNMFIASSLLDMYAKCGNIRLARCIFDKMDLHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACS 254 (514)
Q Consensus 175 ~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 254 (514)
++..+-..-+.++++.|+.+..-.+-.-....|...-..-+.+....|. .+|......... .|+..+...+.....
T Consensus 159 ~d~~Vra~A~raLG~l~~~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~---~~g~~~~~~l~~~la 234 (410)
T TIGR02270 159 EDALVRAAALRALGELPRRLSESTLRLYLRDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQV---LEGGPHRQRLLVLLA 234 (410)
T ss_pred CCHHHHHHHHHHHHhhccccchHHHHHHHcCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHh---ccCccHHHHHHHHHH
Confidence 4555555555666665554333333333345555555555666666666 555555555332 222222222222222
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 040365 255 HAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISNMHAG 308 (514)
Q Consensus 255 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 308 (514)
..|. +++...+..+.++ +. +-...+.++++.|+...+.-+++.|...
T Consensus 235 l~~~-~~a~~~L~~ll~d----~~--vr~~a~~AlG~lg~p~av~~L~~~l~d~ 281 (410)
T TIGR02270 235 VAGG-PDAQAWLRELLQA----AA--TRREALRAVGLVGDVEAAPWCLEAMREP 281 (410)
T ss_pred hCCc-hhHHHHHHHHhcC----hh--hHHHHHHHHHHcCCcchHHHHHHHhcCc
Confidence 2232 3666666655443 22 4456677788888888777777777633
No 401
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=48.69 E-value=74 Score=27.81 Aligned_cols=51 Identities=16% Similarity=0.096 Sum_probs=28.6
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 040365 255 HAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISNM 305 (514)
Q Consensus 255 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 305 (514)
...+.+......+.+.+-....|++..|..++..+...|+.++|.+..+++
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444444444444444333344566666666666666666666666666655
No 402
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=48.64 E-value=2.4e+02 Score=26.55 Aligned_cols=54 Identities=13% Similarity=0.099 Sum_probs=31.9
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHhCC-----CCChhHHHHHHHHHHhCCChHHH
Q 040365 174 DDNMFIASSLLDMYAKCGNIRLARCIFDKMD-----LHDIVSWTAVIMGNALHGNAHDA 227 (514)
Q Consensus 174 ~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~-----~~d~~~~~~li~~~~~~g~~~~A 227 (514)
.++..+...++..+++.+++.+-.++++... ..|...|..+|......|+..-.
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~ 257 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVM 257 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHH
Confidence 4444555556666666666666666655442 33666677777777777765433
No 403
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=48.49 E-value=1.2e+02 Score=25.16 Aligned_cols=63 Identities=14% Similarity=0.170 Sum_probs=42.4
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCh
Q 040365 296 QEAYEFISNMHAGPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRW 361 (514)
Q Consensus 296 ~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 361 (514)
+.|.++.+-|. .....-.........|++..|..+.+.++..+|+|...-...+++|.+.|.-
T Consensus 58 ~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 58 EEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 45555665554 2222333445567789999999999999999999988888888887766643
No 404
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.37 E-value=1.9e+02 Score=25.42 Aligned_cols=89 Identities=12% Similarity=0.018 Sum_probs=52.2
Q ss_pred HHHhccCChHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHhCCCCChhH--HHHHHHHHHhCCChH
Q 040365 150 PACAHLTTLHLGKQLHGCIIRNGFDDN--MFIASSLLDMYAKCGNIRLARCIFDKMDLHDIVS--WTAVIMGNALHGNAH 225 (514)
Q Consensus 150 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~y~k~g~~~~A~~~~~~m~~~d~~~--~~~li~~~~~~g~~~ 225 (514)
..+...++++.|...+.......-..+ ..+---|.......|.+|+|...++....++-.+ ...-.+.+...|+-+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~ 176 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQ 176 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchH
Confidence 345566777777766666554321111 1112234455667777777777777776654333 222334577777777
Q ss_pred HHHHHHHHHHHcC
Q 040365 226 DAISLFEQMEKDG 238 (514)
Q Consensus 226 ~A~~l~~~m~~~g 238 (514)
+|..-|.+..+.+
T Consensus 177 ~Ar~ay~kAl~~~ 189 (207)
T COG2976 177 EARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHcc
Confidence 7777777777654
No 405
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=48.30 E-value=73 Score=20.57 Aligned_cols=33 Identities=15% Similarity=0.193 Sum_probs=19.8
Q ss_pred HHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040365 118 VQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMP 150 (514)
Q Consensus 118 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 150 (514)
.+.|-.+++..++++|.+.|+.-+...|..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 355666666666666666666666655555443
No 406
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.14 E-value=1.9e+02 Score=25.40 Aligned_cols=87 Identities=5% Similarity=-0.089 Sum_probs=40.2
Q ss_pred HHHHHCCCHHHHHHHHccCC-CCChhHHH-----HHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 040365 84 NMYAKCARVEDSHRLFCLLP-VKDAISWN-----SIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTT 157 (514)
Q Consensus 84 ~~~~~~g~~~~A~~~f~~~~-~~d~~~~~-----~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 157 (514)
..+..+|++++|...++... .+....+. -|.+...+.|.+++|+.+++.....+.. ......--+++...|+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg~ 174 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKGD 174 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcCc
Confidence 34555566666665555432 22111111 2334455556666666665544333211 1111222344555666
Q ss_pred hHHHHHHHHHHHHcC
Q 040365 158 LHLGKQLHGCIIRNG 172 (514)
Q Consensus 158 ~~~a~~~~~~~~~~~ 172 (514)
-++|+.-|...++.+
T Consensus 175 k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 175 KQEARAAYEKALESD 189 (207)
T ss_pred hHHHHHHHHHHHHcc
Confidence 666666666655553
No 407
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=47.86 E-value=1.4e+02 Score=23.84 Aligned_cols=61 Identities=8% Similarity=-0.033 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH-------hcCCCCcchHH----HHHHHHHHccChhHHHHHHHHH
Q 040365 311 ENVWLTLLSACRVHKNVELAGKVAEKIF-------MIDPNNMGAYV----ILSNTYAAARRWKDAASLRVFM 371 (514)
Q Consensus 311 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~-------~~~p~~~~~~~----~l~~~~~~~g~~~~a~~~~~~m 371 (514)
...+..|-.++...|++++++...++.+ ++..+....|. .-..++...|+.++|.+-|+..
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 3445556666666666666555544443 34444433443 2344667788999998888743
No 408
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=47.39 E-value=2.6e+02 Score=26.60 Aligned_cols=80 Identities=5% Similarity=-0.049 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHHcCC----CCcHHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCChhHHHHHHHHHHhCCChHHHHHHHH
Q 040365 158 LHLGKQLHGCIIRNGF----DDNMFIASSLLDMYAKCGNIRLARCIFDKMD-LHDIVSWTAVIMGNALHGNAHDAISLFE 232 (514)
Q Consensus 158 ~~~a~~~~~~~~~~~~----~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~-~~d~~~~~~li~~~~~~g~~~~A~~l~~ 232 (514)
.+.+.+.+......+. ..+......++....+.|+.+.-..+++... .++..-...++.+++...+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 3455555555555311 2333444445555555555444444444433 2344445555566555555555555555
Q ss_pred HHHHc
Q 040365 233 QMEKD 237 (514)
Q Consensus 233 ~m~~~ 237 (514)
.....
T Consensus 226 ~~l~~ 230 (324)
T PF11838_consen 226 LLLSN 230 (324)
T ss_dssp HHHCT
T ss_pred HHcCC
Confidence 55553
No 409
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=47.30 E-value=2.4e+02 Score=26.17 Aligned_cols=83 Identities=18% Similarity=0.107 Sum_probs=45.3
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 040365 175 DNMFIASSLLDMYAKCGNIRLARCIFDKMDLHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACS 254 (514)
Q Consensus 175 ~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 254 (514)
-|......+...|.+.|++.+|+.-|-.-..++...+..++.-....|...++ |...-.+++ -|.
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaVL-~yL 152 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIARAVL-QYL 152 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHHHHH-HHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--------------hHHHHHHHH-HHH
Confidence 35677788889999999999998877655444443332233222222322222 222222333 345
Q ss_pred ccCCHHHHHHHHHHhHHh
Q 040365 255 HAGLIDKAWSYFNSMTKD 272 (514)
Q Consensus 255 ~~g~~~~a~~~~~~m~~~ 272 (514)
..+++..|...+....+.
T Consensus 153 ~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HTTBHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 567888888877766543
No 410
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=47.28 E-value=66 Score=20.80 Aligned_cols=31 Identities=16% Similarity=0.359 Sum_probs=15.3
Q ss_pred hcCChhHHHHHHHHHhhCCCCCChhhHHHHH
Q 040365 18 RNGLYEEALNIVRQMGNVNLKPDSFTLSSVL 48 (514)
Q Consensus 18 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 48 (514)
+.|-..++..++++|.+.|+.-+...|..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3444445555555555555544444444443
No 411
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=46.36 E-value=39 Score=31.71 Aligned_cols=44 Identities=25% Similarity=0.301 Sum_probs=33.9
Q ss_pred CChhH-HHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 040365 105 KDAIS-WNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSI 148 (514)
Q Consensus 105 ~d~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 148 (514)
+|..+ ||..|....+.|++++|++++++.++.|+.--..||...
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 34443 678999999999999999999999998876555555433
No 412
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=46.32 E-value=84 Score=28.53 Aligned_cols=66 Identities=15% Similarity=0.119 Sum_probs=40.8
Q ss_pred CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHH
Q 040365 307 AGPTENV-WLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMR 372 (514)
Q Consensus 307 ~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 372 (514)
..|+..+ |+.=+-.+.+..+++.+..--++++++.|+..-....|.........+++|..++.+..
T Consensus 39 ~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~ 105 (284)
T KOG4642|consen 39 INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAY 105 (284)
T ss_pred cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 3455533 34444455556666666666666666766666666666666666667777776666653
No 413
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=46.31 E-value=1.6e+02 Score=26.89 Aligned_cols=56 Identities=14% Similarity=0.008 Sum_probs=46.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHhC
Q 040365 319 SACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRNK 374 (514)
Q Consensus 319 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 374 (514)
.++...|++-++++.-..++...|.|..+|..-+.+.+..=+.++|..=|....+.
T Consensus 238 QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 238 QCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 34567789999999999999999999999988888888877788888877777654
No 414
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=45.95 E-value=1.1e+02 Score=22.65 Aligned_cols=62 Identities=15% Similarity=0.143 Sum_probs=38.9
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHH
Q 040365 162 KQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMDLHDIVSWTAVIMGNALHGNAHDA 227 (514)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A 227 (514)
..++..+.+.|+-.. ...-...+...+.++|.++++.++.+...+|.++..++-..|...-|
T Consensus 19 ~~v~~~L~~~~Vlt~----~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 19 KYLWDHLLSRGVFTP----DMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHhcCCCCH----HHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 345556666653211 11222233455678888888888888888888888888777765444
No 415
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=45.94 E-value=42 Score=31.53 Aligned_cols=41 Identities=17% Similarity=0.378 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 040365 210 SWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVL 250 (514)
Q Consensus 210 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 250 (514)
-||..|....+.|++++|+.++++..+.|+.--..||...+
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 46788888889999999999999999888776666665544
No 416
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=45.84 E-value=66 Score=19.34 Aligned_cols=29 Identities=10% Similarity=-0.054 Sum_probs=14.4
Q ss_pred HHHHHHHHHhcCCHHHHHHH--HHHHHhcCC
Q 040365 314 WLTLLSACRVHKNVELAGKV--AEKIFMIDP 342 (514)
Q Consensus 314 ~~~ll~~~~~~~~~~~a~~~--~~~~~~~~p 342 (514)
|-.+.-.+-..|++++|+.+ ++-+..++|
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 33444555556666666666 334444443
No 417
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=45.83 E-value=2.3e+02 Score=25.52 Aligned_cols=157 Identities=15% Similarity=0.083 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc-CCCCcHHHHHHHHHH
Q 040365 108 ISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLGKQLHGCIIRN-GFDDNMFIASSLLDM 186 (514)
Q Consensus 108 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~ 186 (514)
..||-|.--+...|+++.|.+.|+...+-...-+-...+--| ++--.|++..|.+=+...-+. .-.|-...|--|+.
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E- 177 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE- 177 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH-
Confidence 567777777777888888888887776643222211122111 223346666666544444332 22333333322221
Q ss_pred HHhcCCHHHHHH-HHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-------HHHHHHHHHHHHccCC
Q 040365 187 YAKCGNIRLARC-IFDKMDLHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPN-------SVAFVAVLTACSHAGL 258 (514)
Q Consensus 187 y~k~g~~~~A~~-~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-------~~t~~~ll~a~~~~g~ 258 (514)
..-+..+|.. +.++....|..-|..-|-.|.--.-.+ ..+|++.... -.-+ ..||--+..-+...|+
T Consensus 178 --~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~-a~~n~~~Ae~LTEtyFYL~K~~l~~G~ 252 (297)
T COG4785 178 --QKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISE--ETLMERLKAD-ATDNTSLAEHLTETYFYLGKYYLSLGD 252 (297)
T ss_pred --hhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccH--HHHHHHHHhh-ccchHHHHHHHHHHHHHHHHHHhcccc
Confidence 1223444443 334455556566666555543222111 2234443331 1111 2577788888888999
Q ss_pred HHHHHHHHHHhHH
Q 040365 259 IDKAWSYFNSMTK 271 (514)
Q Consensus 259 ~~~a~~~~~~m~~ 271 (514)
+++|..+|+....
T Consensus 253 ~~~A~~LfKLaia 265 (297)
T COG4785 253 LDEATALFKLAVA 265 (297)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998887754
No 418
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=45.51 E-value=72 Score=32.87 Aligned_cols=70 Identities=17% Similarity=0.082 Sum_probs=39.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 040365 284 AVADLLGRAGKLQEAYEFISNMH--AGPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSN 353 (514)
Q Consensus 284 ~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 353 (514)
.|...+.+.|..-+|..++.+.. ....+.++..+..++....+++.|++.|+.++.++|+++..-+.|..
T Consensus 647 ~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 647 NLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKL 718 (886)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence 34444455555555655554321 11233455566666666667777777777777776666655554443
No 419
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=44.59 E-value=4.7e+02 Score=28.81 Aligned_cols=217 Identities=14% Similarity=0.078 Sum_probs=104.7
Q ss_pred HHCCCHHHHHHHHccCC----CCCh-------hHHHHHHHHH-HHCCChhHHHHHHHHHHHC----CCCCCHHHHHHHHH
Q 040365 87 AKCARVEDSHRLFCLLP----VKDA-------ISWNSIIAGC-VQNGLFDEGLKFFRQMLIA----KIKPRHVSFSSIMP 150 (514)
Q Consensus 87 ~~~g~~~~A~~~f~~~~----~~d~-------~~~~~li~~~-~~~g~~~~A~~l~~~m~~~----g~~p~~~t~~~ll~ 150 (514)
.-..++++|..+..+.. .|+. ..|+++-... ...|++++|+++-+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 44577788777776543 3221 2466554332 3457778888777766543 12233445555566
Q ss_pred HHhccCChHHHHHHHHHHHHcCCCCcHHHHH---HH--HHHHHhcCCHH--HHHHHHHhCC-----CC-----ChhHHHH
Q 040365 151 ACAHLTTLHLGKQLHGCIIRNGFDDNMFIAS---SL--LDMYAKCGNIR--LARCIFDKMD-----LH-----DIVSWTA 213 (514)
Q Consensus 151 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~l--i~~y~k~g~~~--~A~~~~~~m~-----~~-----d~~~~~~ 213 (514)
+..-.|++++|..+.....+..-..++..+. .+ ...+...|... +....|.... .. -......
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 6667788888888777766543223332222 22 12234455322 2222333221 11 1123333
Q ss_pred HHHHHHhC-CChHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHccCCHHHHHHHHHHhHHhcCCCC----CHhHHHHHH
Q 040365 214 VIMGNALH-GNAHDAISLFEQMEKDGVKPNSVAFV--AVLTACSHAGLIDKAWSYFNSMTKDYGIAP----SFEHYAAVA 286 (514)
Q Consensus 214 li~~~~~~-g~~~~A~~l~~~m~~~g~~p~~~t~~--~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~li 286 (514)
+..++.+. +...++..-+..-......|-...+. .+.......|+.++|...++++..- ...+ +...-...+
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l-~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL-LLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-hcCCCCCchHHHHHHHh
Confidence 33444331 22222222222222222222222222 5566667788888888888877442 2222 111112222
Q ss_pred HH--HHhcCCHHHHHHHHHh
Q 040365 287 DL--LGRAGKLQEAYEFISN 304 (514)
Q Consensus 287 ~~--~~~~g~~~~A~~~~~~ 304 (514)
.. ....|+.++|.....+
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHhcccCCHHHHHHHHHh
Confidence 22 3456777777666655
No 420
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=44.41 E-value=82 Score=23.73 Aligned_cols=52 Identities=10% Similarity=-0.063 Sum_probs=31.4
Q ss_pred HhcCCHHHHHHHHHHHHhcCC----CC-----cchHHHHHHHHHHccChhHHHHHHHHHHh
Q 040365 322 RVHKNVELAGKVAEKIFMIDP----NN-----MGAYVILSNTYAAARRWKDAASLRVFMRN 373 (514)
Q Consensus 322 ~~~~~~~~a~~~~~~~~~~~p----~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 373 (514)
.+.||+..|.+.+.+...... .. ..+...++..+...|++++|.+.+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455666666655555554321 11 12334566777888899998888887654
No 421
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=44.31 E-value=1.6e+02 Score=24.18 Aligned_cols=33 Identities=15% Similarity=0.132 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 040365 313 VWLTLLSACRVHKNVELAGKVAEKIFMIDPNNM 345 (514)
Q Consensus 313 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 345 (514)
...-|.-++.+.++++.+.+..+.+++.+|+|.
T Consensus 73 ~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 73 CLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred hhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence 344566678889999999999999999998875
No 422
>PF15469 Sec5: Exocyst complex component Sec5
Probab=43.79 E-value=2.1e+02 Score=24.65 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=14.9
Q ss_pred HHHHHHHccCCHHHHHHHHHHhH
Q 040365 248 AVLTACSHAGLIDKAWSYFNSMT 270 (514)
Q Consensus 248 ~ll~a~~~~g~~~~a~~~~~~m~ 270 (514)
.-|.-|.+.|+++.+...|....
T Consensus 91 ~~L~~~i~~~dy~~~i~dY~kak 113 (182)
T PF15469_consen 91 SNLRECIKKGDYDQAINDYKKAK 113 (182)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHH
Confidence 44556666777777777766654
No 423
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=43.23 E-value=2.1e+02 Score=30.17 Aligned_cols=91 Identities=12% Similarity=0.103 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 040365 108 ISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMY 187 (514)
Q Consensus 108 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 187 (514)
..|..-+.-+...++.. ....+.+...-.-.+.....-++..|.+.|-.+.+..+...+-..-.. ..-|..-+..+
T Consensus 373 ~lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~--~~~~g~AL~~~ 448 (566)
T PF07575_consen 373 SLWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLLK--EGRYGEALSWF 448 (566)
T ss_dssp TTHHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred chHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--CCCHHHHHHHH
Confidence 34555444444333222 344444444323344555566677777777777777666655433211 12344445556
Q ss_pred HhcCCHHHHHHHHHh
Q 040365 188 AKCGNIRLARCIFDK 202 (514)
Q Consensus 188 ~k~g~~~~A~~~~~~ 202 (514)
.++|+......+-+.
T Consensus 449 ~ra~d~~~v~~i~~~ 463 (566)
T PF07575_consen 449 IRAGDYSLVTRIADR 463 (566)
T ss_dssp H--------------
T ss_pred HHCCCHHHHHHHHHH
Confidence 677776655544433
No 424
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=43.11 E-value=1.6e+02 Score=23.79 Aligned_cols=46 Identities=11% Similarity=0.164 Sum_probs=35.6
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc
Q 040365 126 GLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLGKQLHGCIIRN 171 (514)
Q Consensus 126 A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 171 (514)
..+-++.+....+.|++......++||-+.+++..|.++++-+...
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3344555566678899999999999999999999999988877543
No 425
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=42.96 E-value=1.3e+02 Score=26.10 Aligned_cols=28 Identities=14% Similarity=0.306 Sum_probs=15.3
Q ss_pred HHHHhcCCHHHHHHHHHhCCCCCCHHHH
Q 040365 287 DLLGRAGKLQEAYEFISNMHAGPTENVW 314 (514)
Q Consensus 287 ~~~~~~g~~~~A~~~~~~m~~~p~~~~~ 314 (514)
-.|.+.|.+++|.+++++.-..|+....
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~d~~~~~~ 146 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFSDPESQKL 146 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhcCCCchhH
Confidence 3455666666666666665444444433
No 426
>PF13934 ELYS: Nuclear pore complex assembly
Probab=41.35 E-value=2.7e+02 Score=25.15 Aligned_cols=107 Identities=20% Similarity=0.193 Sum_probs=62.9
Q ss_pred HHHHHHHHHH--hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHH
Q 040365 210 SWTAVIMGNA--LHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVAD 287 (514)
Q Consensus 210 ~~~~li~~~~--~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 287 (514)
.+...+.||. .++++++|++++-.- .+.|+... -++.++...|+.+.|..+++.+. ..-.+...-..++.
T Consensus 78 ~~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~~--~Il~~L~~~~~~~lAL~y~~~~~---p~l~s~~~~~~~~~ 149 (226)
T PF13934_consen 78 KYIKFIQGFWLLDHGDFEEALELLSHP---SLIPWFPD--KILQALLRRGDPKLALRYLRAVG---PPLSSPEALTLYFV 149 (226)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHhCCC---CCCcccHH--HHHHHHHHCCChhHHHHHHHhcC---CCCCCHHHHHHHHH
Confidence 3455566644 467777777776321 22233221 36666777888888888888652 11113333333344
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 040365 288 LLGRAGKLQEAYEFISNMHAGPTENVWLTLLSACRVHK 325 (514)
Q Consensus 288 ~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~ 325 (514)
. ..++.+.||..+.+....+-....|..++..|....
T Consensus 150 ~-La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 150 A-LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEEC 186 (226)
T ss_pred H-HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHh
Confidence 4 566888888888887764323456777777666444
No 427
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=40.69 E-value=43 Score=23.05 Aligned_cols=27 Identities=19% Similarity=0.413 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHH
Q 040365 109 SWNSIIAGCVQNGLFDEGLKFFRQMLI 135 (514)
Q Consensus 109 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 135 (514)
-.-.+|.+|.+.|++++|.++..++.+
T Consensus 25 NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 25 NHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344578888999999999888887754
No 428
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=40.48 E-value=1.8e+02 Score=30.70 Aligned_cols=47 Identities=11% Similarity=0.085 Sum_probs=27.1
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHccCCH
Q 040365 213 AVIMGNALHGNAHDAISLFEQMEKD--GVKPNSVAFVAVLTACSHAGLI 259 (514)
Q Consensus 213 ~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~a~~~~g~~ 259 (514)
+++.+|..+|++..+..+++..... |-+.=...++..|+...+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 5666667777777766666666542 2222234455566666666654
No 429
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=40.32 E-value=2.1e+02 Score=28.79 Aligned_cols=106 Identities=15% Similarity=0.156 Sum_probs=51.5
Q ss_pred ChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCCC-------------ChhHHHHHHHHH-----
Q 040365 157 TLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMDLH-------------DIVSWTAVIMGN----- 218 (514)
Q Consensus 157 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~-------------d~~~~~~li~~~----- 218 (514)
.+++-.++++.+.+.| .+| +...-|+.|-+.+++++|..-+++-.+. .+.....++.+.
T Consensus 69 ~~~e~i~lL~~l~~~g-~ad--~lp~TIDSyTR~n~y~~A~~~l~~s~~~~~s~LNGfP~VnhGv~~~R~l~~~v~~PvQ 145 (480)
T TIGR01503 69 LLDEHIELLRTLQEEG-GAD--FLPSTIDAYTRQNRYDEAAVGIKESIKAGRSLLNGFPGVNHGVKGCRKVLEAVNLPLQ 145 (480)
T ss_pred cHHHHHHHHHHHHHcc-CCC--ccceeeecccccccHHHHHHHHHhhhhcCcccccCCCcccccHHHHHHHHHhCCCCee
Confidence 3445555555555544 222 2333456666666666666655544211 122223333322
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHccCCHHHHHHHHHHh
Q 040365 219 ALHGNAHDAISLFEQMEKDGVKPNS---VAFVAVLTACSHAGLIDKAWSYFNSM 269 (514)
Q Consensus 219 ~~~g~~~~A~~l~~~m~~~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m 269 (514)
.+||.+ .+..+++-+...|+.... ++|+. -|++.=-+++++..|+.+
T Consensus 146 vRHGtp-DarlL~e~~~a~G~~a~EGG~ISYnl---PYsK~vpLe~si~~Wqyv 195 (480)
T TIGR01503 146 IRHGTP-DARLLAEIILAGGFTSFEGGGISYNI---PYAKNVTLEKSLEDWQYC 195 (480)
T ss_pred ccCCCC-cHHHHHHHHHHcCCCccCCCcceecc---ccCCCCCHHHHHHHHHHH
Confidence 245544 466677777777765332 44432 344444556666555533
No 430
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=40.03 E-value=2.4e+02 Score=25.19 Aligned_cols=63 Identities=13% Similarity=0.052 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhcCCHH-------HHHHHHHHHHhcC--CC----CcchHHHHHHHHHHccChhHHHHHHHHHHhCC
Q 040365 313 VWLTLLSACRVHKNVE-------LAGKVAEKIFMID--PN----NMGAYVILSNTYAAARRWKDAASLRVFMRNKG 375 (514)
Q Consensus 313 ~~~~ll~~~~~~~~~~-------~a~~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 375 (514)
++--+...|+..|+.+ .|...|++..+.+ |. .......++..+.+.|++++|.+.|.++...+
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 3444555566666643 3445555555443 22 23455577888899999999999999887654
No 431
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=39.24 E-value=2e+02 Score=29.60 Aligned_cols=56 Identities=18% Similarity=0.268 Sum_probs=35.0
Q ss_pred HHHHHHHHHCCCHHHHHHHHccCCCC--Ch---hHHHHHHHHHHHCCChhHHHHHHHHHHH
Q 040365 80 SSLINMYAKCARVEDSHRLFCLLPVK--DA---ISWNSIIAGCVQNGLFDEGLKFFRQMLI 135 (514)
Q Consensus 80 ~~li~~~~~~g~~~~A~~~f~~~~~~--d~---~~~~~li~~~~~~g~~~~A~~l~~~m~~ 135 (514)
..|+.-|.+++++++|..++..|.-. .. .+.+.+.+.+.+..--.+....++.+..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 45788999999999999999998722 12 2334444555555444444444554443
No 432
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.18 E-value=5e+02 Score=27.06 Aligned_cols=53 Identities=17% Similarity=0.122 Sum_probs=32.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCC-CcchHHHHHHHHH-HccChhHHHHHHHHH
Q 040365 319 SACRVHKNVELAGKVAEKIFMIDPN-NMGAYVILSNTYA-AARRWKDAASLRVFM 371 (514)
Q Consensus 319 ~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~m 371 (514)
....+.|-+..|.+..+.+++++|. |+.....+++.|+ ++.+|+=-.++++.-
T Consensus 350 ~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 350 QSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3445666677777777777777766 6666666666664 445555555555544
No 433
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=37.15 E-value=72 Score=28.75 Aligned_cols=55 Identities=18% Similarity=0.279 Sum_probs=32.3
Q ss_pred HhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 040365 290 GRAGKLQEAYEFISNMH--AGPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNN 344 (514)
Q Consensus 290 ~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 344 (514)
.+.|+.+.|.+++.+.. .+.+...|-.+...-.+.|+.+.|.+.+++.++++|++
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 34555555666655542 12345566666666666666677777776666666554
No 434
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=36.48 E-value=1.6e+02 Score=25.14 Aligned_cols=60 Identities=13% Similarity=0.077 Sum_probs=32.0
Q ss_pred HHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHH
Q 040365 235 EKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQ 296 (514)
Q Consensus 235 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 296 (514)
...|++++..-. .++......+..-.|.++++.+.+. +...+..|.-.-++.+.+.|-+.
T Consensus 18 ~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~-~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 18 AQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREA-EPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhh-CCCCCcchHHHHHHHHHHCCCEE
Confidence 345665554332 3333444444555667777777443 44445544445556667777653
No 435
>TIGR02328 conserved hypothetical protein. Members of this protein are found in a small number of taxonomically well separated species, yet are strongly conserved, suggesting lateral gene transfer. Members are found in Treponema denticola, Clostridium acetobutylicum, and several of the Firmicutes. The function of this protein is unknown.
Probab=36.37 E-value=26 Score=27.21 Aligned_cols=25 Identities=16% Similarity=0.227 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHhCCcccCCccc
Q 040365 406 RINEALKELLERMEQEGYVPDTKEV 430 (514)
Q Consensus 406 ~~~~~l~~l~~~m~~~g~~pd~~~~ 430 (514)
..+.-=+.+.++|.++||.||+.+.
T Consensus 49 ~L~~yH~lv~~EM~~RGY~~~~~W~ 73 (120)
T TIGR02328 49 KLFAYHLLVMEEMATRGYHVSKQWL 73 (120)
T ss_pred HHHHHHHHHHHHHHHcCCCCChhhc
Confidence 3444445789999999999998654
No 436
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=36.29 E-value=1.8e+02 Score=21.88 Aligned_cols=36 Identities=6% Similarity=-0.009 Sum_probs=26.4
Q ss_pred hcCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCh
Q 040365 189 KCGNIRLARCIFDKMDLHDIVSWTAVIMGNALHGNA 224 (514)
Q Consensus 189 k~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~ 224 (514)
..-+.+++.++++.++.+...+|..+..++-..|..
T Consensus 46 ~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~~ 81 (90)
T cd08332 46 KPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQE 81 (90)
T ss_pred CCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcChH
Confidence 445677888888888888888888888887655543
No 437
>PRK13342 recombination factor protein RarA; Reviewed
Probab=36.10 E-value=4.6e+02 Score=26.24 Aligned_cols=44 Identities=18% Similarity=0.163 Sum_probs=28.6
Q ss_pred HHHHHHHHHHh---CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 040365 210 SWTAVIMGNAL---HGNAHDAISLFEQMEKDGVKPNSVAFVAVLTAC 253 (514)
Q Consensus 210 ~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 253 (514)
.+..+++++.+ .++.+.|+..+..|.+.|..|....-..+..++
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 34445555554 467888888888888888777755544444443
No 438
>PF13934 ELYS: Nuclear pore complex assembly
Probab=35.93 E-value=3.3e+02 Score=24.59 Aligned_cols=93 Identities=13% Similarity=0.178 Sum_probs=49.4
Q ss_pred hcCCHHHHHHHHHhCCCCChhH--HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 040365 189 KCGNIRLARCIFDKMDLHDIVS--WTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYF 266 (514)
Q Consensus 189 k~g~~~~A~~~~~~m~~~d~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 266 (514)
..++++.|.+.+-.- .+.. ..-++.++...|+.+.|+.+++.+....-.+ .....++.+ ...+.+.+|+.+-
T Consensus 90 D~~~~~~A~~~L~~p---s~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~--~~~~~~~~~-La~~~v~EAf~~~ 163 (226)
T PF13934_consen 90 DHGDFEEALELLSHP---SLIPWFPDKILQALLRRGDPKLALRYLRAVGPPLSSP--EALTLYFVA-LANGLVTEAFSFQ 163 (226)
T ss_pred ChHhHHHHHHHhCCC---CCCcccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCH--HHHHHHHHH-HHcCCHHHHHHHH
Confidence 345666666665333 2211 1236777777888888888887754322222 222223333 4457888888776
Q ss_pred HHhHHhcCCCCCHhHHHHHHHHHHh
Q 040365 267 NSMTKDYGIAPSFEHYAAVADLLGR 291 (514)
Q Consensus 267 ~~m~~~~~~~p~~~~~~~li~~~~~ 291 (514)
+..... -....+..++..+..
T Consensus 164 R~~~~~----~~~~l~e~l~~~~~~ 184 (226)
T PF13934_consen 164 RSYPDE----LRRRLFEQLLEHCLE 184 (226)
T ss_pred HhCchh----hhHHHHHHHHHHHHH
Confidence 655321 113455555555543
No 439
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=35.82 E-value=32 Score=34.38 Aligned_cols=94 Identities=16% Similarity=0.107 Sum_probs=61.0
Q ss_pred HHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHH-HHHHHhcCCHHHHHHHHHh-CCCCCCH-HHHHHHHHHHHhcCC
Q 040365 250 LTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAV-ADLLGRAGKLQEAYEFISN-MHAGPTE-NVWLTLLSACRVHKN 326 (514)
Q Consensus 250 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~-m~~~p~~-~~~~~ll~~~~~~~~ 326 (514)
+......+.++.|..++..+. .+.|+-.+|-.. ..++.+.+++..|+.=... +...|+. ..|..=..+|...+.
T Consensus 11 an~~l~~~~fd~avdlysKaI---~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAI---ELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHH---hcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 445566778888888888776 457754444332 3667788888777654443 3333432 233333456677778
Q ss_pred HHHHHHHHHHHHhcCCCCcc
Q 040365 327 VELAGKVAEKIFMIDPNNMG 346 (514)
Q Consensus 327 ~~~a~~~~~~~~~~~p~~~~ 346 (514)
+.+|...|+....+.|+++.
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~ 107 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPD 107 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHH
Confidence 88888888888888888763
No 440
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=35.68 E-value=4e+02 Score=25.40 Aligned_cols=42 Identities=17% Similarity=0.260 Sum_probs=25.0
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhH
Q 040365 229 SLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMT 270 (514)
Q Consensus 229 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 270 (514)
++++.|.+.++.|.-..|..+.-.+++.=.+...+.+++.+.
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~ 305 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL 305 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh
Confidence 455556666666666666555555555555666666666554
No 441
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=35.45 E-value=14 Score=25.70 Aligned_cols=21 Identities=33% Similarity=0.534 Sum_probs=16.7
Q ss_pred eeEEEecCCcccccCCcccCC
Q 040365 490 REIIVRDNSRFHHFEDGKCSC 510 (514)
Q Consensus 490 ~~i~~rd~~~~h~f~~g~csc 510 (514)
..|-+.|.+..|+|+||+-+-
T Consensus 8 ksi~LkDGstvyiFKDGKMam 28 (73)
T PF11525_consen 8 KSIPLKDGSTVYIFKDGKMAM 28 (73)
T ss_dssp EEEEBTTSEEEEEETTS-EEE
T ss_pred eeEecCCCCEEEEEcCCceeh
Confidence 467789999999999998653
No 442
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=35.33 E-value=2.6e+02 Score=27.87 Aligned_cols=57 Identities=23% Similarity=0.184 Sum_probs=34.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh-------c-CCCCcchHHHHHHHHHHccChhHHHHHHHHHH
Q 040365 316 TLLSACRVHKNVELAGKVAEKIFM-------I-DPNNMGAYVILSNTYAAARRWKDAASLRVFMR 372 (514)
Q Consensus 316 ~ll~~~~~~~~~~~a~~~~~~~~~-------~-~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 372 (514)
.|++..+-.||+..|+++++.+-- . -+-...+|..++-+|...+++.+|.++|....
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666665554311 0 01234566677777888888888888777653
No 443
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=35.32 E-value=2.3e+02 Score=23.53 Aligned_cols=20 Identities=10% Similarity=-0.087 Sum_probs=8.8
Q ss_pred HHHHccCCHHHHHHHHHHhH
Q 040365 251 TACSHAGLIDKAWSYFNSMT 270 (514)
Q Consensus 251 ~a~~~~g~~~~a~~~~~~m~ 270 (514)
..+...+..-.|.++++.+.
T Consensus 28 ~~L~~~~~~~sAeei~~~l~ 47 (145)
T COG0735 28 ELLLEADGHLSAEELYEELR 47 (145)
T ss_pred HHHHhcCCCCCHHHHHHHHH
Confidence 33333333344555555443
No 444
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=34.87 E-value=4.3e+02 Score=25.57 Aligned_cols=89 Identities=13% Similarity=0.129 Sum_probs=43.5
Q ss_pred HHHHHHHHCCCHHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHH-HHHHHHHHHCCCCCCHHHHHHHHHHHhccCChH
Q 040365 81 SLINMYAKCARVEDSHRLFCLLPVKDAISWNSIIAGCVQNGLFDEG-LKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLH 159 (514)
Q Consensus 81 ~li~~~~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A-~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 159 (514)
.+.+.++|.++-+.+..+-..++.-......++..++-...-.+.. ..+++.+... ||..+...++++.+......
T Consensus 171 GIAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~~~~ 247 (340)
T PF12069_consen 171 GIADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSAPASD 247 (340)
T ss_pred HHHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCchh
Confidence 3556666666655555554444432233334444443333322222 2233333332 66666666777766666555
Q ss_pred HHHHHHHHHHHcC
Q 040365 160 LGKQLHGCIIRNG 172 (514)
Q Consensus 160 ~a~~~~~~~~~~~ 172 (514)
.....+..+++..
T Consensus 248 ~~~~~i~~~L~~~ 260 (340)
T PF12069_consen 248 LVAILIDALLQSP 260 (340)
T ss_pred HHHHHHHHHhcCc
Confidence 5555455555443
No 445
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=34.67 E-value=1.1e+02 Score=23.69 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=11.3
Q ss_pred HHHHHHHHCCChhHHHHHHHHH
Q 040365 112 SIIAGCVQNGLFDEGLKFFRQM 133 (514)
Q Consensus 112 ~li~~~~~~g~~~~A~~l~~~m 133 (514)
.++..|...|+.++|...+.++
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHh
Confidence 3444555556666665555554
No 446
>PF15161 Neuropep_like: Neuropeptide-like
Probab=34.45 E-value=21 Score=23.62 Aligned_cols=16 Identities=38% Similarity=0.800 Sum_probs=11.6
Q ss_pred ccccccchhhhHHHhhh
Q 040365 471 LRVCGDCHTAIKFISKI 487 (514)
Q Consensus 471 l~~c~d~h~~~~~~s~~ 487 (514)
-|-|-|||.+. |+.+.
T Consensus 13 sRPCVDCHAFe-fmqRA 28 (65)
T PF15161_consen 13 SRPCVDCHAFE-FMQRA 28 (65)
T ss_pred CCCchhhHHHH-HHHHH
Confidence 47799999876 55543
No 447
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=34.14 E-value=5e+02 Score=26.14 Aligned_cols=59 Identities=14% Similarity=0.093 Sum_probs=44.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 040365 282 YAAVADLLGRAGKLQEAYEFISNMH--AGPTENVWLTLLSACRVHKNVELAGKVAEKIFMI 340 (514)
Q Consensus 282 ~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 340 (514)
...|+.-|.-.|.+.||...++++. .-...+++.+++.+..+.|+-..-..+++.....
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~s 572 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKS 572 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3457777888999999999999864 3356778889999988888877666665555443
No 448
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=34.02 E-value=41 Score=24.47 Aligned_cols=26 Identities=31% Similarity=0.569 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHhCCcccCCccc
Q 040365 405 HRINEALKELLERMEQEGYVPDTKEV 430 (514)
Q Consensus 405 ~~~~~~l~~l~~~m~~~g~~pd~~~~ 430 (514)
.++...+++-..+++..|+.||...+
T Consensus 8 i~il~~ie~~inELk~dG~ePDivL~ 33 (85)
T PF08967_consen 8 IRILELIEEKINELKEDGFEPDIVLV 33 (85)
T ss_dssp HHHHHHHHHHHHHHHHTT----EEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 45667788888999999999997554
No 449
>PF05119 Terminase_4: Phage terminase, small subunit; InterPro: IPR006448 This entry is represented by Streptococcus phage 7201, Orf21. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This group of sequences describe the distinct family of phage (and integrated prophage) putative terminase small subunit sequnces. Members tend to be encoded by the gene adjacent to the phage terminase large subunit gene.
Probab=33.85 E-value=1.3e+02 Score=22.76 Aligned_cols=34 Identities=24% Similarity=0.400 Sum_probs=26.5
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhCCcccCCcccc
Q 040365 398 DKSHPFYHRINEALKELLERMEQEGYVPDTKEVL 431 (514)
Q Consensus 398 ~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~ 431 (514)
...||..........++..-..+.|+.|....-+
T Consensus 57 ~~~nP~~~~~~~~~~~~~~l~~~lGLtP~sR~kl 90 (100)
T PF05119_consen 57 PKKNPAVSILNKAMKQMRSLASELGLTPASRAKL 90 (100)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHcCCCHHHHhhc
Confidence 4568988888877888888888999999865433
No 450
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=33.22 E-value=1.9e+02 Score=28.73 Aligned_cols=56 Identities=23% Similarity=0.250 Sum_probs=38.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC-----------CChhHHHHHHHHHHhCCChHHHHHHHHHHH
Q 040365 180 ASSLLDMYAKCGNIRLARCIFDKMDL-----------HDIVSWTAVIMGNALHGNAHDAISLFEQME 235 (514)
Q Consensus 180 ~~~li~~y~k~g~~~~A~~~~~~m~~-----------~d~~~~~~li~~~~~~g~~~~A~~l~~~m~ 235 (514)
.-.|+..++-.||+..|.++++.+.- -.+.++.-+.-+|...+++.+|.+.|....
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777788888888888877641 134456666677777788888888777654
No 451
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.16 E-value=6.3e+02 Score=27.96 Aligned_cols=131 Identities=18% Similarity=0.193 Sum_probs=86.7
Q ss_pred HHHHhcCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 040365 185 DMYAKCGNIRLARCIFDKMDLHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWS 264 (514)
Q Consensus 185 ~~y~k~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 264 (514)
.....||+++.|.+.-..+. |...|..|...-...|+.+-|+..|++... |..|-..|.-.|+.++-.+
T Consensus 651 ~LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~K 719 (1202)
T KOG0292|consen 651 ELALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSK 719 (1202)
T ss_pred eeehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHH
Confidence 34567999999988877665 556899999999999999999999987654 3333344666788877666
Q ss_pred HHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040365 265 YFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISNMHAGPTENVWLTLLSACRVHKNVELAGKVAEKIFM 339 (514)
Q Consensus 265 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 339 (514)
..+.... .-|.. .....-.-.|+.++=.++++.....|-. |- .-..+|.-+.|+++.++...
T Consensus 720 m~~iae~----r~D~~---~~~qnalYl~dv~ervkIl~n~g~~~la--yl----ta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 720 MMKIAEI----RNDAT---GQFQNALYLGDVKERVKILENGGQLPLA--YL----TAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHHHh----hhhhH---HHHHHHHHhccHHHHHHHHHhcCcccHH--HH----HHhhcCcHHHHHHHHHhhcc
Confidence 5554422 22221 1112223457888888888776533321 21 23467888888888888765
No 452
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=32.97 E-value=1.8e+02 Score=21.56 Aligned_cols=61 Identities=11% Similarity=0.184 Sum_probs=38.0
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHHCCCHHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHH
Q 040365 62 EIHGYAIRHGLDANVCIGSSLINMYAKCARVEDSHRLFCLLPVKDAISWNSIIAGCVQNGLFDEG 126 (514)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A 126 (514)
.++..+.+.|+-.. .-.-..-+..-+.+.|.++++.++.+...+|.+...++-..|...-|
T Consensus 20 ~v~~~L~~~~Vlt~----~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 20 YLWDHLLSRGVFTP----DMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHhcCCCCH----HHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 45566666553221 11222223445677788888888888888888888888777765544
No 453
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=32.72 E-value=2.1e+02 Score=30.15 Aligned_cols=73 Identities=12% Similarity=0.124 Sum_probs=43.7
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHHCCCHH------HHHHHHccCC-CCChhHHHHHHHH
Q 040365 46 SVLPIFADYVDVIKGKEIHGYAIRHG--LDANVCIGSSLINMYAKCARVE------DSHRLFCLLP-VKDAISWNSIIAG 116 (514)
Q Consensus 46 ~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~------~A~~~f~~~~-~~d~~~~~~li~~ 116 (514)
+++.+|...|++..+.+++....... -..-...+|..|+-..+.|.++ .|.++++... .-|..||..|+.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 77888888888888888888776653 1222344566666666667543 3444444332 3355566666555
Q ss_pred HH
Q 040365 117 CV 118 (514)
Q Consensus 117 ~~ 118 (514)
-.
T Consensus 113 sl 114 (1117)
T COG5108 113 SL 114 (1117)
T ss_pred hc
Confidence 43
No 454
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.50 E-value=8.2e+02 Score=28.11 Aligned_cols=20 Identities=20% Similarity=0.034 Sum_probs=15.3
Q ss_pred HHHHhcCCHHHHHHHHHhCC
Q 040365 185 DMYAKCGNIRLARCIFDKMD 204 (514)
Q Consensus 185 ~~y~k~g~~~~A~~~~~~m~ 204 (514)
-+|..+|...+|...|.+..
T Consensus 928 ~~yl~tge~~kAl~cF~~a~ 947 (1480)
T KOG4521|consen 928 IAYLGTGEPVKALNCFQSAL 947 (1480)
T ss_pred eeeecCCchHHHHHHHHHHh
Confidence 34778888888888887763
No 455
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=32.36 E-value=2.4e+02 Score=24.70 Aligned_cols=51 Identities=12% Similarity=0.155 Sum_probs=27.2
Q ss_pred HHHhcCCHHHHHHHHHhCC------CCChhHHHHHHH-HHHhCCC--hHHHHHHHHHHHH
Q 040365 186 MYAKCGNIRLARCIFDKMD------LHDIVSWTAVIM-GNALHGN--AHDAISLFEQMEK 236 (514)
Q Consensus 186 ~y~k~g~~~~A~~~~~~m~------~~d~~~~~~li~-~~~~~g~--~~~A~~l~~~m~~ 236 (514)
.....|++++|.+-++++. ++-...|+.+.. +++.++. +-+|..++.-...
T Consensus 38 ~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~ 97 (204)
T COG2178 38 FLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKD 97 (204)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhc
Confidence 3445566777766666653 223345555554 5666554 4455555554443
No 456
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=31.45 E-value=8e+02 Score=27.65 Aligned_cols=248 Identities=13% Similarity=0.060 Sum_probs=114.0
Q ss_pred CCchhHHHHHHHHHHHCCCHHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040365 73 DANVCIGSSLINMYAKCARVEDSHRLFCLLPVKDAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPAC 152 (514)
Q Consensus 73 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 152 (514)
.+|+.+-...+..+.+.+..+....+...+..+|...-...+.++.+.+........+..+... +|...-...+.++
T Consensus 632 D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~VR~~A~~aL 708 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVVRAAALDVL 708 (897)
T ss_pred CCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHHHHHHHHHH
Confidence 4455555555555555554333333333344444433333434433332211111222222221 3444444444444
Q ss_pred hccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHH-HHHHH
Q 040365 153 AHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMDLHDIVSWTAVIMGNALHGNAHD-AISLF 231 (514)
Q Consensus 153 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~-A~~l~ 231 (514)
...+.-+ .. .+-..++ .+|..+-...+.++.+.+..+. +......++...-.....++...+..+. +...+
T Consensus 709 ~~~~~~~-~~-~l~~~L~---D~d~~VR~~Av~aL~~~~~~~~---l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L 780 (897)
T PRK13800 709 RALRAGD-AA-LFAAALG---DPDHRVRIEAVRALVSVDDVES---VAGAATDENREVRIAVAKGLATLGAGGAPAGDAV 780 (897)
T ss_pred HhhccCC-HH-HHHHHhc---CCCHHHHHHHHHHHhcccCcHH---HHHHhcCCCHHHHHHHHHHHHHhccccchhHHHH
Confidence 4332111 11 1111221 4455555555555555544322 2233345555555555556655554332 33444
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH
Q 040365 232 EQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISNMHAGPTE 311 (514)
Q Consensus 232 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~ 311 (514)
..+.. .+|...-...+.++...|..+.+...+..+.+ .++...-...+.++++.+. +++...+..+-..|+.
T Consensus 781 ~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~----d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~D~~~ 852 (897)
T PRK13800 781 RALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR----ASAWQVRQGAARALAGAAA-DVAVPALVEALTDPHL 852 (897)
T ss_pred HHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc----CCChHHHHHHHHHHHhccc-cchHHHHHHHhcCCCH
Confidence 44443 34555666666677766665444333333333 2455555556666666665 3444544444445666
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040365 312 NVWLTLLSACRVHKNVELAGKVAEKIFM 339 (514)
Q Consensus 312 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 339 (514)
.+-...+.++...+....+...+..+++
T Consensus 853 ~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 853 DVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 6666666666665333445555555444
No 457
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=31.29 E-value=65 Score=23.46 Aligned_cols=36 Identities=36% Similarity=0.387 Sum_probs=0.0
Q ss_pred CCCCCcchHH-HHHHHHHhcCChhHHHHHHHHHhhCC
Q 040365 1 MPVSDLVSWN-TVIVGLARNGLYEEALNIVRQMGNVN 36 (514)
Q Consensus 1 m~~~~~~~~~-~li~~~~~~g~~~~A~~l~~~m~~~g 36 (514)
||.-|..-|| +++..+.+..-.++|+++++.|.+.|
T Consensus 25 ~~~~~~~gy~PtV~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 25 EPKIDFSGYNPTVIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred cccCCcCCCCchHHHHHHHhCcHHHHHHHHHHHHHhC
No 458
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=31.25 E-value=2.8e+02 Score=22.31 Aligned_cols=42 Identities=14% Similarity=0.256 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHcCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHH
Q 040365 160 LGKQLHGCIIRNGFDD-NMFIASSLLDMYAKCGNIRLARCIFD 201 (514)
Q Consensus 160 ~a~~~~~~~~~~~~~~-~~~~~~~li~~y~k~g~~~~A~~~~~ 201 (514)
.+.++|..|...|+-. -...|..-...+.+.|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6666666666665432 34455666666667777777777665
No 459
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=31.10 E-value=2.7e+02 Score=28.46 Aligned_cols=89 Identities=12% Similarity=0.166 Sum_probs=52.4
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--------CcchHH
Q 040365 278 SFEHYAAVADLLGRAGKLQEAYEFISNMHAGPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPN--------NMGAYV 349 (514)
Q Consensus 278 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~--------~~~~~~ 349 (514)
++..|-.++.-|...+++++|.++-.-.. +...|.+|......+.+...++.++..+.+.+.- -+..-.
T Consensus 572 sV~py~~iL~e~~sssKWeqavRLCrfv~---eqTMWAtlAa~Av~~~~m~~~EiAYaA~~~idKVsyin~iK~ltske~ 648 (737)
T KOG1524|consen 572 SVNPYPEILHEYLSSSKWEQAVRLCRFVQ---EQTMWATLAAVAVRKHQMQISEIAYAAALQIDKVSYINHIKALTSKEE 648 (737)
T ss_pred eccccHHHHHHHhccchHHHHHHHHHhcc---chHHHHHHHHHHHhhccccHHHHHHHHhhchhhHHHHHHHhccCcHHH
Confidence 33445566666777778888877766554 4566777777767777776666666665554311 111222
Q ss_pred HHHHHHHHccChhHHHHHHH
Q 040365 350 ILSNTYAAARRWKDAASLRV 369 (514)
Q Consensus 350 ~l~~~~~~~g~~~~a~~~~~ 369 (514)
.++....-.|+..+|.-++.
T Consensus 649 ~mA~~~l~~G~~~eAe~iLl 668 (737)
T KOG1524|consen 649 QMAENSLMLGRMLEAETILL 668 (737)
T ss_pred HHHHHHHHhccchhhhHHHH
Confidence 34444445666666666554
No 460
>PF14427 Pput2613-deam: Pput_2613-like deaminase
Probab=30.80 E-value=2e+02 Score=22.39 Aligned_cols=57 Identities=16% Similarity=0.072 Sum_probs=44.2
Q ss_pred hhHhhhHHHHHHHHccccCCCCCeEEEEecccccccchhhhHHHhhhcceeEEEecC
Q 040365 441 NLLYYHSERLAIVFGIICTPDGTTIRIIKNLRVCGDCHTAIKFISKIVQREIIVRDN 497 (514)
Q Consensus 441 ~~~~~h~e~la~~~~~~~~~~~~~~~i~~nl~~c~d~h~~~~~~s~~~~~~i~~rd~ 497 (514)
..|.-|.|.-++--=-.+..+|..+-|---++-|..|..+|.-.+.-.+-.|+-++.
T Consensus 45 ~slaTHTE~ri~~~l~~~~~~Gd~m~I~G~ypPC~~CkG~Mr~~s~~~g~~I~Y~w~ 101 (118)
T PF14427_consen 45 SSLATHTEARITRDLPLNQVPGDRMLIDGQYPPCNSCKGKMRRASEKSGATIQYTWP 101 (118)
T ss_pred hhhhhhhHhHHHhhcCccccCCceEEEeeecCCCchhHHHHHHhhhccCcEEEEecC
Confidence 346678888766533333444888888888999999999999999999988888774
No 461
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=30.66 E-value=2.7e+02 Score=23.09 Aligned_cols=25 Identities=8% Similarity=-0.044 Sum_probs=11.2
Q ss_pred HHHHhccCChHHHHHHHHHHHHcCC
Q 040365 149 MPACAHLTTLHLGKQLHGCIIRNGF 173 (514)
Q Consensus 149 l~~~~~~~~~~~a~~~~~~~~~~~~ 173 (514)
+..+.+.+..-.|.++|+.+.+.+.
T Consensus 27 l~~L~~~~~~~sAeei~~~l~~~~p 51 (145)
T COG0735 27 LELLLEADGHLSAEELYEELREEGP 51 (145)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHhCC
Confidence 3333434333445555555554443
No 462
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=30.08 E-value=1.5e+02 Score=28.21 Aligned_cols=15 Identities=13% Similarity=0.220 Sum_probs=8.8
Q ss_pred HHHHHHHHHhcCCCC
Q 040365 330 AGKVAEKIFMIDPNN 344 (514)
Q Consensus 330 a~~~~~~~~~~~p~~ 344 (514)
|.+...++.+.+|.-
T Consensus 381 AvEAihRAvEFNPHV 395 (556)
T KOG3807|consen 381 AVEAIHRAVEFNPHV 395 (556)
T ss_pred HHHHHHHHhhcCCCC
Confidence 455556666666653
No 463
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=29.89 E-value=4.4e+02 Score=24.12 Aligned_cols=38 Identities=13% Similarity=0.190 Sum_probs=20.3
Q ss_pred CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH
Q 040365 205 LHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNS 243 (514)
Q Consensus 205 ~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 243 (514)
+|.......|+..+. .+++++|.+.+.++-+.|..|..
T Consensus 236 ~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~D 273 (333)
T KOG0991|consen 236 EPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPED 273 (333)
T ss_pred CCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHH
Confidence 444444444444432 44566666666666666665543
No 464
>PRK10941 hypothetical protein; Provisional
Probab=29.83 E-value=4.7e+02 Score=24.44 Aligned_cols=60 Identities=8% Similarity=-0.030 Sum_probs=29.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhHHh
Q 040365 211 WTAVIMGNALHGNAHDAISLFEQMEKDGVKPNS-VAFVAVLTACSHAGLIDKAWSYFNSMTKD 272 (514)
Q Consensus 211 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 272 (514)
.+.+-.+|.+.++++.|+...+.+.. +.|+. .-+.--.-.|.+.|.+..|..=++...+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~--l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQ--FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 34444555555566666655555555 23332 22333333455555555555555544443
No 465
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=29.69 E-value=2.4e+02 Score=21.09 Aligned_cols=62 Identities=13% Similarity=-0.018 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CcchHHHHHHHHHHccChh-HHHHHHHHH
Q 040365 310 TENVWLTLLSACRVHKNVELAGKVAEKIFMIDPN--NMGAYVILSNTYAAARRWK-DAASLRVFM 371 (514)
Q Consensus 310 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~-~a~~~~~~m 371 (514)
|......+...+...|+++.|...+-.+++.++. +...-..|+..+...|.-+ .+.+.+++|
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 4566666777777888888888777777776643 4556667777777777643 444444444
No 466
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=29.65 E-value=2.6e+02 Score=26.89 Aligned_cols=91 Identities=13% Similarity=0.108 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC-C---CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 040365 281 HYAAVADLLGRAGKLQEAYEFISNMH-A---GPT--ENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNT 354 (514)
Q Consensus 281 ~~~~li~~~~~~g~~~~A~~~~~~m~-~---~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 354 (514)
+|--=..-|.+..++..|...|.+-. . .|| .+.|+.=..+-.-.||+..++.=..+++..+|.+.-.|..=+.+
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 33334455777888888888887642 1 233 46677767777778999999999999999999998888888888
Q ss_pred HHHccChhHHHHHHHHH
Q 040365 355 YAAARRWKDAASLRVFM 371 (514)
Q Consensus 355 ~~~~g~~~~a~~~~~~m 371 (514)
+....++++|....++.
T Consensus 163 ~~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 88888877766655543
No 467
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=29.53 E-value=6.8e+02 Score=26.28 Aligned_cols=59 Identities=10% Similarity=-0.048 Sum_probs=30.8
Q ss_pred hhHHHHHHHHHHHCCCHHHHHHHHccCCCCC-hhHHHHHHHHHHHCCChhHHHHHHHHHHHC
Q 040365 76 VCIGSSLINMYAKCARVEDSHRLFCLLPVKD-AISWNSIIAGCVQNGLFDEGLKFFRQMLIA 136 (514)
Q Consensus 76 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~d-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 136 (514)
...++.|+.... .=+.++-.++++++.. . ...|..++++....|-.....-+.+.+...
T Consensus 310 ~~~f~~lv~~lR-~~~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~ 369 (574)
T smart00638 310 AAKFLRLVRLLR-TLSEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKNK 369 (574)
T ss_pred HHHHHHHHHHHH-hCCHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence 334555555443 2334555555555443 2 456677777777777655444444444443
No 468
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.49 E-value=7.1e+02 Score=26.46 Aligned_cols=84 Identities=10% Similarity=0.063 Sum_probs=65.7
Q ss_pred hcCCHHHHHHHHHh-CCCCC-C------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChh
Q 040365 291 RAGKLQEAYEFISN-MHAGP-T------ENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWK 362 (514)
Q Consensus 291 ~~g~~~~A~~~~~~-m~~~p-~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 362 (514)
+..++..+.++|.. |..-| | ....+.|--+|....+.+.|.++++++.+.+|.++-+-..+..+....|.-+
T Consensus 366 ~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se 445 (872)
T KOG4814|consen 366 KMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSE 445 (872)
T ss_pred HHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchH
Confidence 45677777777754 33211 1 2356777778889999999999999999999998888888889999999999
Q ss_pred HHHHHHHHHHhC
Q 040365 363 DAASLRVFMRNK 374 (514)
Q Consensus 363 ~a~~~~~~m~~~ 374 (514)
+|+.+.......
T Consensus 446 ~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 446 EALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHHHHhh
Confidence 999998877654
No 469
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=29.21 E-value=1e+02 Score=27.81 Aligned_cols=55 Identities=13% Similarity=0.101 Sum_probs=49.6
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHhCC
Q 040365 321 CRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRNKG 375 (514)
Q Consensus 321 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 375 (514)
..+.++.+.+.+++.+++++-|.....|..+...-.++|+.+.|.+.+++..+-.
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 3567889999999999999999999999999999999999999999999887654
No 470
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=29.00 E-value=5e+02 Score=24.49 Aligned_cols=72 Identities=8% Similarity=0.235 Sum_probs=46.4
Q ss_pred HHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040365 265 YFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISNMH----AGPTENVWLTLLSACRVHKNVELAGKVAEK 336 (514)
Q Consensus 265 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 336 (514)
+.+.+...++-.++..+..+++..+++.+++.+-.++++... ...|...|..+|..-...||......+.+.
T Consensus 188 vV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 188 VVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 333344445556666777777777777777777777776542 124666777777777777776665555443
No 471
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=28.83 E-value=5.4e+02 Score=24.90 Aligned_cols=87 Identities=16% Similarity=0.094 Sum_probs=47.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHH-HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 040365 182 SLLDMYAKCGNIRLARCIFDKMDLHDIVSWTAVIMGNALHGNAHDA-ISLFEQMEKDGVKPNSVAFVAVLTACSHAGLID 260 (514)
Q Consensus 182 ~li~~y~k~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A-~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 260 (514)
.+.+.+++.++.+.+..+-..+..-......++..++-...-.+.. ..+++.+... ||..+...+++|.+......
T Consensus 171 GIAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~~~~ 247 (340)
T PF12069_consen 171 GIADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSAPASD 247 (340)
T ss_pred HHHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCchh
Confidence 3556666666666555555555433333444454444443333332 3334444333 78888888888888776666
Q ss_pred HHHHHHHHhHH
Q 040365 261 KAWSYFNSMTK 271 (514)
Q Consensus 261 ~a~~~~~~m~~ 271 (514)
.....+..+..
T Consensus 248 ~~~~~i~~~L~ 258 (340)
T PF12069_consen 248 LVAILIDALLQ 258 (340)
T ss_pred HHHHHHHHHhc
Confidence 65554554443
No 472
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=28.76 E-value=2.2e+02 Score=26.07 Aligned_cols=19 Identities=21% Similarity=0.085 Sum_probs=8.7
Q ss_pred HHHHHHHHhcCCHHHHHHH
Q 040365 315 LTLLSACRVHKNVELAGKV 333 (514)
Q Consensus 315 ~~ll~~~~~~~~~~~a~~~ 333 (514)
..|..++...|+.+....+
T Consensus 222 ~~l~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 222 WRLLECAKRLGDVEDYLTT 240 (247)
T ss_pred HHHHHHHHHhCCHHHHHHH
Confidence 3344444455555444443
No 473
>PF14044 NETI: NETI protein
Probab=27.93 E-value=54 Score=21.99 Aligned_cols=17 Identities=41% Similarity=0.860 Sum_probs=14.0
Q ss_pred HHHHHHHHHhCCcccCC
Q 040365 411 LKELLERMEQEGYVPDT 427 (514)
Q Consensus 411 l~~l~~~m~~~g~~pd~ 427 (514)
+.+-+++|++.||.|-.
T Consensus 10 I~~CL~RM~~eGY~Pvr 26 (57)
T PF14044_consen 10 ISDCLARMKKEGYMPVR 26 (57)
T ss_pred HHHHHHHHHHcCCCcee
Confidence 34788999999999964
No 474
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=27.88 E-value=6e+02 Score=25.10 Aligned_cols=52 Identities=13% Similarity=0.068 Sum_probs=26.8
Q ss_pred hcCChhHHHHHHHHHhhCCCCCChh--hHHHHHHHHh--CCCChHHHHHHHHHHHHh
Q 040365 18 RNGLYEEALNIVRQMGNVNLKPDSF--TLSSVLPIFA--DYVDVIKGKEIHGYAIRH 70 (514)
Q Consensus 18 ~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~~~~--~~~~~~~a~~~~~~~~~~ 70 (514)
..+++..|.++|+.+... ++++.. .+..+..+|. ..-++.+|.+.++...+.
T Consensus 143 n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred hcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 556666666666666655 444433 2333333332 334555666666655443
No 475
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=27.85 E-value=20 Score=23.99 Aligned_cols=12 Identities=33% Similarity=0.952 Sum_probs=8.9
Q ss_pred ccccccchhhhH
Q 040365 471 LRVCGDCHTAIK 482 (514)
Q Consensus 471 l~~c~d~h~~~~ 482 (514)
.-+|||||.--.
T Consensus 20 iYiCgdC~~en~ 31 (62)
T KOG3507|consen 20 IYICGDCGQENT 31 (62)
T ss_pred EEEecccccccc
Confidence 368999997544
No 476
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=27.84 E-value=96 Score=24.14 Aligned_cols=61 Identities=8% Similarity=0.042 Sum_probs=32.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCC--ChHHHHHHHHHHHHhCC
Q 040365 10 NTVIVGLARNGLYEEALNIVRQMGNVNLKPDSFTLSSVLPIFADYV--DVIKGKEIHGYAIRHGL 72 (514)
Q Consensus 10 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~g~ 72 (514)
+.+|..|...|+.++|...+.++.... -.......++..+...+ ..+..-.++..+.+.+.
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~~--~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~ 68 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLPS--QHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKL 68 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-GG--GHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCc--cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCC
Confidence 456778888899999999998864321 11122233333333332 22234455555555554
No 477
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=27.79 E-value=9e+02 Score=27.10 Aligned_cols=153 Identities=16% Similarity=0.079 Sum_probs=78.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-HhHHHHHHHHH
Q 040365 211 WTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPS-FEHYAAVADLL 289 (514)
Q Consensus 211 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~ 289 (514)
-|..+.-++..+..+......++..+.. |..--.+.+.++.+.+. .+....++....++.-.|- ..-|-++...-
T Consensus 675 ~n~~l~~l~~~~~~~~~~~~~~~~~~a~---~mtd~~~al~~l~~~~~-~~~~~~l~~f~~~~~~~~lv~~kwf~~qa~~ 750 (863)
T TIGR02414 675 RNACLSYLSAADDAEIRNLALEQFKSAD---NMTDRLAALSALVHFES-DFRERALAAFYQKWKDDPLVMDKWFALQATS 750 (863)
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhCC---CHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHCCCchhHHHHHHHHhCC
Confidence 3444555555554433333333333332 22223344445554333 2323334444344443443 23343433322
Q ss_pred HhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCC------HHHHH-HHHHHHHhcCCCCcchHHHHHHHHHHccCh
Q 040365 290 GRAGKLQEAYEFISNMHAG-PTENVWLTLLSACRVHKN------VELAG-KVAEKIFMIDPNNMGAYVILSNTYAAARRW 361 (514)
Q Consensus 290 ~~~g~~~~A~~~~~~m~~~-p~~~~~~~ll~~~~~~~~------~~~a~-~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 361 (514)
...+-++...++.+.-... .|+.-.++|+.+++..+. -..+. -+.+.++++++-|+.+-..|+..+.+-.++
T Consensus 751 ~~~~~~~~v~~l~~h~~f~~~npn~~ral~~~f~~~n~~~fh~~~g~gy~~~~~~i~~ld~~Np~~aarl~~~~~~w~~~ 830 (863)
T TIGR02414 751 PRPDTLERVKALLQHPAFDLKNPNRVRALIGAFANNNLVRFHDISGSGYRFLADQIIAIDRFNPQVAARLLEPLTRWRKL 830 (863)
T ss_pred CcccHHHHHHHHhcCCCCCcCCCcHHHHHHHHHHhcCcccccCCCCcHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhhcC
Confidence 2333344444443322211 233345889999864432 22333 345667789999999999999999999998
Q ss_pred hHHHHH
Q 040365 362 KDAASL 367 (514)
Q Consensus 362 ~~a~~~ 367 (514)
+..++-
T Consensus 831 ~~~r~~ 836 (863)
T TIGR02414 831 DPKRQE 836 (863)
T ss_pred CHHHHH
Confidence 887763
No 478
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.76 E-value=6.8e+02 Score=25.66 Aligned_cols=31 Identities=10% Similarity=0.098 Sum_probs=16.8
Q ss_pred HhCCCCchhHHHHHHHHHHHCCCHHHHHHHHcc
Q 040365 69 RHGLDANVCIGSSLINMYAKCARVEDSHRLFCL 101 (514)
Q Consensus 69 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~ 101 (514)
+.|+..+..+...++.. ..|++..|...++.
T Consensus 191 ~egi~i~~eal~~Ia~~--s~GdlR~aln~Le~ 221 (472)
T PRK14962 191 AEGIEIDREALSFIAKR--ASGGLRDALTMLEQ 221 (472)
T ss_pred HcCCCCCHHHHHHHHHH--hCCCHHHHHHHHHH
Confidence 34555555555555543 24666666665554
No 479
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=26.94 E-value=3e+02 Score=26.02 Aligned_cols=52 Identities=8% Similarity=0.110 Sum_probs=27.2
Q ss_pred HHHHHHHCCCHHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHH
Q 040365 82 LINMYAKCARVEDSHRLFCLLPVKDAISWNSIIAGCVQNGLFDEGLKFFRQMLI 135 (514)
Q Consensus 82 li~~~~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 135 (514)
++..+-+.+++....+.+..+. .+..-...+..+...|++..|+++..+..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3344444444444444444432 233334456666677777777777766554
No 480
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=26.75 E-value=2.8e+02 Score=23.72 Aligned_cols=38 Identities=11% Similarity=-0.039 Sum_probs=16.8
Q ss_pred CChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCH
Q 040365 156 TTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNI 193 (514)
Q Consensus 156 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~ 193 (514)
...-.|.++++.+.+.+...+..+.---++.+...|-+
T Consensus 39 ~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 39 PGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred CCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 33444555555555554333333333334444444443
No 481
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=26.70 E-value=5.7e+02 Score=24.39 Aligned_cols=76 Identities=18% Similarity=0.180 Sum_probs=39.5
Q ss_pred HhCCCCchhHHHHHH-HHHHHCCC-HHHHHHHHccCC-CCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHH
Q 040365 69 RHGLDANVCIGSSLI-NMYAKCAR-VEDSHRLFCLLP-VKDAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSF 145 (514)
Q Consensus 69 ~~g~~~~~~~~~~li-~~~~~~g~-~~~A~~~f~~~~-~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 145 (514)
..|. +...+++.|. +-+.+.|= ..=|.++|.... ++| .|.+|+.+.+.+.-+.-+++ ++|+..|-
T Consensus 159 ~nGt-~~~tvl~~L~~d~LVkeGi~l~F~~~lFk~~~~Ek~---i~~lis~Lrkg~md~rLmef--------fPpnkrs~ 226 (412)
T KOG2297|consen 159 SNGT-LPATVLQSLLNDNLVKEGIALSFAVKLFKEWLVEKD---INDLISSLRKGKMDDRLMEF--------FPPNKRSV 226 (412)
T ss_pred hCCC-CCHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHhhcc---HHHHHHHHHhcChHhHHHHh--------cCCcchhH
Confidence 3353 3444445444 33444443 233667776543 333 45677776666555544444 47777666
Q ss_pred HHHHHHHhccC
Q 040365 146 SSIMPACAHLT 156 (514)
Q Consensus 146 ~~ll~~~~~~~ 156 (514)
......+...|
T Consensus 227 E~Fak~Ft~ag 237 (412)
T KOG2297|consen 227 EHFAKYFTDAG 237 (412)
T ss_pred HHHHHHHhHhh
Confidence 55555444433
No 482
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=26.61 E-value=1.5e+02 Score=23.16 Aligned_cols=45 Identities=11% Similarity=-0.020 Sum_probs=23.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCC
Q 040365 12 VIVGLARNGLYEEALNIVRQMGNVNLKPDSFTLSSVLPIFADYVD 56 (514)
Q Consensus 12 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 56 (514)
++..+...+..-.|-++++.+.+.+...+..|.-..|+.+...|-
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 344444445555566666666555544555554444555544443
No 483
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=26.56 E-value=4.3e+02 Score=24.93 Aligned_cols=97 Identities=21% Similarity=0.219 Sum_probs=50.2
Q ss_pred CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhCC-----CCCCHHHHHHHHH---HHHhcCCHHHHHHHHHHHHhcCCC--
Q 040365 274 GIAPSFEHYAAVADLLGRAGKLQEAYEFISNMH-----AGPTENVWLTLLS---ACRVHKNVELAGKVAEKIFMIDPN-- 343 (514)
Q Consensus 274 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~p~~~~~~~ll~---~~~~~~~~~~a~~~~~~~~~~~p~-- 343 (514)
|-.-..+.+..+.+-|+..++.+.+.+...+.- ......++-+.+. .|....-+++.++..+.+++.+-+
T Consensus 110 gE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWe 189 (412)
T COG5187 110 GETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWE 189 (412)
T ss_pred cchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHH
Confidence 333345677778888999999988888776531 1111222222222 233333345555666666665422
Q ss_pred ---CcchHHHHHHHHHHccChhHHHHHHHHHH
Q 040365 344 ---NMGAYVILSNTYAAARRWKDAASLRVFMR 372 (514)
Q Consensus 344 ---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 372 (514)
.-.+|..+- +....++.+|..++....
T Consensus 190 RrNRyK~Y~Gi~--~m~~RnFkeAa~Ll~d~l 219 (412)
T COG5187 190 RRNRYKVYKGIF--KMMRRNFKEAAILLSDIL 219 (412)
T ss_pred hhhhHHHHHHHH--HHHHHhhHHHHHHHHHHh
Confidence 112232222 223446677776665443
No 484
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=26.49 E-value=1.6e+02 Score=22.95 Aligned_cols=46 Identities=17% Similarity=0.213 Sum_probs=30.6
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 040365 214 VIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLI 259 (514)
Q Consensus 214 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 259 (514)
++..+...+..-.|.++++++.+.+..++..|....|..+...|.+
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 4455555566667778888887777666777766666666666654
No 485
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=26.40 E-value=3.5e+02 Score=21.88 Aligned_cols=24 Identities=29% Similarity=0.271 Sum_probs=11.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCC
Q 040365 283 AAVADLLGRAGKLQEAYEFISNMH 306 (514)
Q Consensus 283 ~~li~~~~~~g~~~~A~~~~~~m~ 306 (514)
.++..++.=.|..++|.++++..+
T Consensus 70 EAlAAaLyI~G~~~~A~~lL~~Fk 93 (127)
T PF04034_consen 70 EALAAALYILGFKEQAEELLSKFK 93 (127)
T ss_pred HHHHHHHHHcCCHHHHHHHHhcCC
Confidence 344444444555555555554443
No 486
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=25.83 E-value=2.7e+02 Score=29.02 Aligned_cols=133 Identities=17% Similarity=0.081 Sum_probs=85.1
Q ss_pred CCCHHHHHHHHHHHHcc--CCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHh-cCCHHHHHHHHHhC-CCCC--CHHH
Q 040365 240 KPNSVAFVAVLTACSHA--GLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGR-AGKLQEAYEFISNM-HAGP--TENV 313 (514)
Q Consensus 240 ~p~~~t~~~ll~a~~~~--g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m-~~~p--~~~~ 313 (514)
.|+..|...++.-.... ..-+-|-.+|..|.+ .+.|--...| +...|.| .|+...|...+... ..+| ..+.
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~ln-~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~ 644 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLILN-EAGLYWRAVGNSTFAIACLQRALNLAPLQQDVP 644 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEee-cccceeeecCCcHHHHHHHHHHhccChhhhccc
Confidence 46666665555443332 233445556655532 3334222222 2334444 58888888876654 2333 2234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHhCC
Q 040365 314 WLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRNKG 375 (514)
Q Consensus 314 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 375 (514)
...|.......|-...|-.++.+.+.+....+-++..+.++|....+.+.|.+.++...+..
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence 45566666777777788888888888877777899999999999999999999998776553
No 487
>PF08225 Antimicrobial19: Pseudin antimicrobial peptide; InterPro: IPR013156 Pseudins are a subfamily of the FSAP family (Frog Secreted Active Peptides) extracted from the skin of the paradoxical frog Pseudis paradoxa (Paradoxical frog). The pseudins belong to the class of cationic, amphipathic-helical antimicrobial peptides [].; GO: 0006952 defense response
Probab=25.82 E-value=39 Score=17.30 Aligned_cols=12 Identities=33% Similarity=0.515 Sum_probs=8.5
Q ss_pred ccchhhhHHHhh
Q 040365 475 GDCHTAIKFISK 486 (514)
Q Consensus 475 ~d~h~~~~~~s~ 486 (514)
...|+++|+||.
T Consensus 10 qglhe~ikli~n 21 (23)
T PF08225_consen 10 QGLHEVIKLINN 21 (23)
T ss_pred HHHHHHHHHHhc
Confidence 346888888874
No 488
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=25.76 E-value=6.6e+02 Score=25.23 Aligned_cols=83 Identities=14% Similarity=0.160 Sum_probs=59.1
Q ss_pred CCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHH--------HHHhcCCHHHHHHHHHhCC---
Q 040365 136 AKIKPRHVSFSSIMPACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLD--------MYAKCGNIRLARCIFDKMD--- 204 (514)
Q Consensus 136 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~--------~y~k~g~~~~A~~~~~~m~--- 204 (514)
..+.||.+|.+-+.+.++..-..+-...+|+...+.+ .|-.+.+-+||- .-.+...-+++.++++.|+
T Consensus 177 kkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa-DPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~L 255 (669)
T KOG3636|consen 177 KKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA-DPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQL 255 (669)
T ss_pred cccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchhc
Confidence 4689999999988888888888888999999888877 444444433332 1235566789999999997
Q ss_pred -CCChhHHHHHHHHHH
Q 040365 205 -LHDIVSWTAVIMGNA 219 (514)
Q Consensus 205 -~~d~~~~~~li~~~~ 219 (514)
-.|+.-+-+|...|+
T Consensus 256 ~~eDvpDffsLAqyY~ 271 (669)
T KOG3636|consen 256 SVEDVPDFFSLAQYYS 271 (669)
T ss_pred ccccchhHHHHHHHHh
Confidence 336655666665554
No 489
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=25.59 E-value=3.2e+02 Score=21.14 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=11.9
Q ss_pred HHHHHHHCCChhHHHHHHHHH
Q 040365 113 IIAGCVQNGLFDEGLKFFRQM 133 (514)
Q Consensus 113 li~~~~~~g~~~~A~~l~~~m 133 (514)
++..|...++.++|.+-+.++
T Consensus 8 ~l~ey~~~~D~~ea~~~l~~L 28 (113)
T smart00544 8 IIEEYLSSGDTDEAVHCLLEL 28 (113)
T ss_pred HHHHHHHcCCHHHHHHHHHHh
Confidence 445555556666666555554
No 490
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=25.41 E-value=1.5e+02 Score=28.04 Aligned_cols=75 Identities=9% Similarity=0.077 Sum_probs=46.9
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 040365 278 SFEHYAAVADLLGRAGKLQEAYEFISNMH-AGP-TENVWLT-LLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILS 352 (514)
Q Consensus 278 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 352 (514)
|+..|...+.-..+.|.+.+...++.+.- ..| |+..|-. --.-+..+++++.+..+|.+.++++|++|..|....
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyf 183 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYF 183 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHH
Confidence 55555555544445555555555555542 223 5555543 223356788999999999999999998887766443
No 491
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=25.37 E-value=1.2e+02 Score=21.66 Aligned_cols=37 Identities=22% Similarity=0.356 Sum_probs=26.2
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 040365 219 ALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSH 255 (514)
Q Consensus 219 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 255 (514)
...|+.+.+.+++++....|..|.......+..+...
T Consensus 12 l~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~ 48 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEE 48 (79)
T ss_dssp HHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 3468888889999988888888877666656555443
No 492
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=25.20 E-value=8.2e+02 Score=25.74 Aligned_cols=129 Identities=16% Similarity=0.136 Sum_probs=26.9
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 040365 241 PNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISNMHAGPTENVWLTLLSA 320 (514)
Q Consensus 241 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~ 320 (514)
.+...-.-++..|.+.|..+.+..+.+.+-.+. -....|..-+.-+.++|+......+ +| .++..
T Consensus 403 ~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~---~~~~~~g~AL~~~~ra~d~~~v~~i-----------~~-~ll~~ 467 (566)
T PF07575_consen 403 DTNDDAEKLLEICAELGLEDVAREICKILGQRL---LKEGRYGEALSWFIRAGDYSLVTRI-----------AD-RLLEE 467 (566)
T ss_dssp -SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHH---HHHHHHHHHHHHHH------------------------------
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH---HHCCCHHHHHHHHHHCCCHHHHHHH-----------HH-HHHHH
Confidence 345566777888888888888888887664331 1122333334444444444333222 22 23344
Q ss_pred HHhcCCHHHHHHHHHHHHhcC--CCCcchHHHHHHHH--HHccChhHHHHHHHHHHhCCCccCCcccEEEE
Q 040365 321 CRVHKNVELAGKVAEKIFMID--PNNMGAYVILSNTY--AAARRWKDAASLRVFMRNKGMKKTPACSWIEV 387 (514)
Q Consensus 321 ~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~--~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~ 387 (514)
|...|... ...+.+.+.... .+.-..|..+-..| .+.|++.+|.+.+-.+.+.++.| ...|..+
T Consensus 468 ~~~~~~~~-~~~ll~~i~~~~~~~~~L~fla~yreF~~~~~~~~~~~Aa~~Lv~Ll~~~~~P--k~f~~~L 535 (566)
T PF07575_consen 468 YCNNGEPL-DDDLLDNIGSPMLLSQRLSFLAKYREFYELYDEGDFREAASLLVSLLKSPIAP--KSFWPLL 535 (566)
T ss_dssp -----------------------------------------------------------------------
T ss_pred HhcCCCcc-cHHHHHHhcchhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHCCCCCc--HHHHHHH
Confidence 44444321 111111111100 11112233332322 34588888888777777666554 3466544
No 493
>PF06135 DUF965: Bacterial protein of unknown function (DUF965); InterPro: IPR009309 This family consists of several hypothetical bacterial proteins. The function of the family is unknown.
Probab=24.16 E-value=96 Score=22.50 Aligned_cols=23 Identities=35% Similarity=0.638 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHhCCcccCC
Q 040365 405 HRINEALKELLERMEQEGYVPDT 427 (514)
Q Consensus 405 ~~~~~~l~~l~~~m~~~g~~pd~ 427 (514)
.++.+.|..+...+++.||.|-.
T Consensus 15 ~~~~~iL~~Vy~AL~EKGYnPin 37 (79)
T PF06135_consen 15 KEIREILKQVYAALEEKGYNPIN 37 (79)
T ss_pred hhHHHHHHHHHHHHHHcCCChHH
Confidence 45666788999999999999954
No 494
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=24.07 E-value=3.1e+02 Score=20.49 Aligned_cols=17 Identities=12% Similarity=0.149 Sum_probs=8.1
Q ss_pred HccCCHHHHHHHHHHhH
Q 040365 254 SHAGLIDKAWSYFNSMT 270 (514)
Q Consensus 254 ~~~g~~~~a~~~~~~m~ 270 (514)
...|..++|...+++.+
T Consensus 52 ~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 52 RRFGHYEEALQALEEAI 68 (94)
T ss_pred HHhCCHHHHHHHHHHHH
Confidence 34455555555544443
No 495
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=23.81 E-value=1.1e+02 Score=21.91 Aligned_cols=34 Identities=18% Similarity=0.230 Sum_probs=22.4
Q ss_pred hcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 040365 18 RNGLYEEALNIVRQMGNVNLKPDSFTLSSVLPIF 51 (514)
Q Consensus 18 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 51 (514)
-.|+.+.+.+++++....|..|.......+..+.
T Consensus 13 ~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m 46 (79)
T PF02607_consen 13 LAGDEEEAEALLEEALAQGYPPEDIIEEILMPAM 46 (79)
T ss_dssp HTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3577788888888888777766666555555443
No 496
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=23.72 E-value=2.2e+02 Score=28.46 Aligned_cols=33 Identities=18% Similarity=0.205 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 040365 312 NVWLTLLSACRVHKNVELAGKVAEKIFMIDPNN 344 (514)
Q Consensus 312 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 344 (514)
.+.++-++.+.+++|+..|..+.++++++.|..
T Consensus 301 LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 301 LALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 456777888899999999999999999998864
No 497
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=23.33 E-value=3.2e+02 Score=20.35 Aligned_cols=63 Identities=11% Similarity=0.036 Sum_probs=37.1
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHH
Q 040365 161 GKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMDLHDIVSWTAVIMGNALHGNAHDA 227 (514)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A 227 (514)
+..+++.+.+.|+- +..-. =..-.+....++|.++++.++.++..+|..+.+++-..|...-|
T Consensus 16 v~~ild~L~~~gvl-t~~~~---e~I~~~~t~~~qa~~Lld~L~trG~~Af~~F~~aL~~~~~~~La 78 (86)
T cd08323 16 TSYIMDHMISDGVL-TLDEE---EKVKSKATQKEKAVMLINMILTKDNHAYVSFYNALLHEGYKDLA 78 (86)
T ss_pred HHHHHHHHHhcCCC-CHHHH---HHHHcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCChHHH
Confidence 34456666665532 11111 12223555677788888888888888888887777665554433
No 498
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=22.98 E-value=7e+02 Score=24.16 Aligned_cols=87 Identities=15% Similarity=0.136 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhCC-------CCChh--HHHHHHHHHHhCCChHHHHHHHHHHHH-----cCCCCCH
Q 040365 178 FIASSLLDMYAKCGNIRLARCIFDKMD-------LHDIV--SWTAVIMGNALHGNAHDAISLFEQMEK-----DGVKPNS 243 (514)
Q Consensus 178 ~~~~~li~~y~k~g~~~~A~~~~~~m~-------~~d~~--~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~ 243 (514)
.....++...-++++.++|.+.++++. +||.+ .-..+...+...|+..++.+++.+... .|+.|+.
T Consensus 76 slvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~V 155 (380)
T KOG2908|consen 76 SLVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNV 155 (380)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhh
Q ss_pred HH--HHHHHHHHHccCCHHHHHH
Q 040365 244 VA--FVAVLTACSHAGLIDKAWS 264 (514)
Q Consensus 244 ~t--~~~ll~a~~~~g~~~~a~~ 264 (514)
.+ |..=-..|-..|++.....
T Consensus 156 h~~fY~lssqYyk~~~d~a~yYr 178 (380)
T KOG2908|consen 156 HSSFYSLSSQYYKKIGDFASYYR 178 (380)
T ss_pred hhhHHHHHHHHHHHHHhHHHHHH
No 499
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=22.95 E-value=6.9e+02 Score=24.34 Aligned_cols=78 Identities=28% Similarity=0.411 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHhCCCccCCcccEEEECCEEEEEEeCCCCCCC--hH
Q 040365 328 ELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRNKGMKKTPACSWIEVKNKAYAFVAGDKSHPF--YH 405 (514)
Q Consensus 328 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~--~~ 405 (514)
++.+++.-++--.+|+|+.+-..+ .|.+++++++++|-. +++ +.++|+...+- ..
T Consensus 28 e~vl~AA~~l~laDPeDSD~N~if-----------~avkiydeL~~~Ged-------veV-----A~VsG~~~~~v~ad~ 84 (344)
T PF04123_consen 28 EAVLDAAVKLALADPEDSDVNAIF-----------GAVKIYDELKAEGED-------VEV-----AVVSGSPDVGVEADR 84 (344)
T ss_pred HHHHHHHHHHhcCCcccccHHHHH-----------HHHHHHHHHHhcCCC-------eEE-----EEEECCCCCchhhHH
Confidence 445555566666789887654433 578999999998753 344 77888765432 23
Q ss_pred HHHHHHHHHHHHHHhCCcccCCcccccc
Q 040365 406 RINEALKELLERMEQEGYVPDTKEVLHD 433 (514)
Q Consensus 406 ~~~~~l~~l~~~m~~~g~~pd~~~~~~~ 433 (514)
++.++++++.+ .+.||...+..|
T Consensus 85 ~I~~qld~vl~-----~~~~~~~i~VsD 107 (344)
T PF04123_consen 85 KIAEQLDEVLS-----KFDPDSAIVVSD 107 (344)
T ss_pred HHHHHHHHHHH-----hCCCCEEEEEec
Confidence 34445555544 466775555444
No 500
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=22.89 E-value=3e+02 Score=25.56 Aligned_cols=59 Identities=20% Similarity=0.122 Sum_probs=48.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHh
Q 040365 315 LTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRN 373 (514)
Q Consensus 315 ~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 373 (514)
+.+=.++.+.++++.|.+..++.+.++|.++.-..--+-+|.+.|...-|.+-++...+
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~ 243 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVE 243 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHH
Confidence 34445678888999999999999999999887777777889999998888888876544
Done!