Query 040365
Match_columns 514
No_of_seqs 731 out of 3925
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 12:15:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040365.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040365hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 4.5E-35 1.5E-39 307.1 41.4 366 2-374 80-579 (597)
2 2xpi_A Anaphase-promoting comp 100.0 2.3E-31 7.7E-36 279.0 33.3 297 55-356 286-595 (597)
3 4g26_A Pentatricopeptide repea 100.0 6.4E-30 2.2E-34 259.2 20.2 212 23-256 7-223 (501)
4 4g26_A Pentatricopeptide repea 100.0 1.6E-29 5.6E-34 256.3 22.8 197 95-292 9-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 4.5E-26 1.5E-30 225.6 43.2 353 12-374 5-368 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 4.1E-25 1.4E-29 218.7 39.7 348 5-360 32-388 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 2.4E-23 8E-28 210.0 33.8 305 41-354 26-372 (450)
8 2gw1_A Mitochondrial precursor 99.9 6.1E-23 2.1E-27 210.4 33.2 362 6-375 6-479 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 4.6E-21 1.6E-25 193.2 33.0 305 63-374 14-358 (450)
10 2gw1_A Mitochondrial precursor 99.9 6.7E-21 2.3E-25 195.2 31.0 343 4-351 37-489 (514)
11 3fp2_A TPR repeat-containing p 99.9 3.5E-20 1.2E-24 191.1 36.3 360 6-375 25-492 (537)
12 3ieg_A DNAJ homolog subfamily 99.9 8.8E-19 3E-23 170.3 34.5 326 5-358 2-353 (359)
13 3ieg_A DNAJ homolog subfamily 99.9 6.4E-18 2.2E-22 164.2 37.0 304 41-374 3-335 (359)
14 3hym_B Cell division cycle pro 99.8 2.7E-18 9.1E-23 165.0 29.1 286 73-361 19-321 (330)
15 3fp2_A TPR repeat-containing p 99.8 3.5E-18 1.2E-22 176.1 30.7 340 4-349 57-500 (537)
16 3hym_B Cell division cycle pro 99.8 2.1E-17 7.1E-22 158.7 28.8 264 105-374 20-299 (330)
17 1fch_A Peroxisomal targeting s 99.8 1.6E-17 5.6E-22 162.4 26.5 278 87-369 36-354 (368)
18 1b89_A Protein (clathrin heavy 99.8 1.6E-17 5.5E-22 161.2 22.7 268 7-305 33-308 (449)
19 2xm6_A Protein corresponding t 99.8 5.8E-15 2E-19 150.5 42.9 351 5-376 38-434 (490)
20 4eqf_A PEX5-related protein; a 99.8 2.5E-17 8.7E-22 161.1 23.5 276 90-370 45-352 (365)
21 1b89_A Protein (clathrin heavy 99.8 5.2E-19 1.8E-23 171.6 10.8 250 88-368 15-266 (449)
22 1fch_A Peroxisomal targeting s 99.8 9.5E-17 3.2E-21 156.9 24.1 269 43-338 66-357 (368)
23 3mkr_A Coatomer subunit epsilo 99.8 2.1E-15 7.2E-20 142.5 32.1 269 86-368 9-288 (291)
24 4eqf_A PEX5-related protein; a 99.7 8.8E-17 3E-21 157.2 21.7 261 40-305 64-353 (365)
25 4g1t_A Interferon-induced prot 99.7 2.2E-15 7.6E-20 152.6 32.4 364 6-384 51-469 (472)
26 2ooe_A Cleavage stimulation fa 99.7 8E-15 2.7E-19 151.0 37.0 362 5-374 12-454 (530)
27 3cv0_A Peroxisome targeting si 99.7 2.4E-16 8.3E-21 151.0 23.9 258 108-371 22-312 (327)
28 3spa_A Mtrpol, DNA-directed RN 99.7 2.1E-18 7.1E-23 180.1 8.1 148 75-222 126-286 (1134)
29 2xm6_A Protein corresponding t 99.7 3E-14 1E-18 145.2 38.3 334 5-357 74-452 (490)
30 3cv0_A Peroxisome targeting si 99.7 4E-16 1.4E-20 149.5 22.3 263 6-305 21-312 (327)
31 3spa_A Mtrpol, DNA-directed RN 99.7 4.5E-18 1.5E-22 177.6 9.1 132 173-305 123-262 (1134)
32 3mkr_A Coatomer subunit epsilo 99.7 1.1E-15 3.8E-20 144.4 23.5 247 114-375 6-265 (291)
33 2ooe_A Cleavage stimulation fa 99.6 1.6E-13 5.5E-18 141.2 31.4 331 39-374 11-420 (530)
34 1xi4_A Clathrin heavy chain; a 99.6 7.1E-13 2.4E-17 143.0 36.6 321 10-369 989-1340(1630)
35 3uq3_A Heat shock protein STI1 99.6 4.9E-14 1.7E-18 129.9 23.1 224 108-374 6-236 (258)
36 1xnf_A Lipoprotein NLPI; TPR, 99.6 6.1E-14 2.1E-18 130.8 22.6 241 119-368 17-269 (275)
37 1xi4_A Clathrin heavy chain; a 99.6 1.2E-12 4E-17 141.4 33.7 316 10-367 1053-1377(1630)
38 3uq3_A Heat shock protein STI1 99.6 4.8E-14 1.6E-18 130.0 20.2 233 76-352 5-254 (258)
39 2pl2_A Hypothetical conserved 99.6 5.1E-14 1.7E-18 126.9 19.6 192 174-371 2-211 (217)
40 3u4t_A TPR repeat-containing p 99.6 2.6E-13 8.8E-18 126.4 20.7 241 79-357 6-267 (272)
41 2pl2_A Hypothetical conserved 99.6 2.9E-13 9.8E-18 121.9 19.5 195 4-203 3-211 (217)
42 4g1t_A Interferon-induced prot 99.6 1.8E-12 6.1E-17 131.1 27.6 332 5-351 93-470 (472)
43 1ouv_A Conserved hypothetical 99.5 4.3E-12 1.5E-16 118.4 27.5 226 106-344 5-255 (273)
44 2ho1_A Type 4 fimbrial biogene 99.5 2.1E-12 7E-17 118.8 25.0 205 107-347 37-245 (252)
45 2ho1_A Type 4 fimbrial biogene 99.5 1.1E-12 3.7E-17 120.7 22.9 197 177-375 37-239 (252)
46 1xnf_A Lipoprotein NLPI; TPR, 99.5 5.7E-13 2E-17 124.1 21.0 241 17-266 16-269 (275)
47 2h6f_A Protein farnesyltransfe 99.5 1.1E-12 3.8E-17 128.2 23.6 246 106-357 96-365 (382)
48 2vq2_A PILW, putative fimbrial 99.5 1.8E-12 6.1E-17 116.6 23.3 197 176-374 7-211 (225)
49 2vq2_A PILW, putative fimbrial 99.5 3.7E-12 1.3E-16 114.5 24.9 172 177-351 42-222 (225)
50 1ouv_A Conserved hypothetical 99.5 9.5E-12 3.2E-16 116.1 27.6 224 141-376 5-253 (273)
51 2q7f_A YRRB protein; TPR, prot 99.5 4.8E-13 1.6E-17 122.1 18.1 143 208-353 91-235 (243)
52 3u4t_A TPR repeat-containing p 99.5 4.8E-12 1.6E-16 117.7 23.6 228 41-272 3-250 (272)
53 2q7f_A YRRB protein; TPR, prot 99.5 1E-12 3.4E-17 120.0 18.3 198 175-375 21-223 (243)
54 3e4b_A ALGK; tetratricopeptide 99.5 1.6E-12 5.6E-17 130.7 21.0 343 12-376 9-389 (452)
55 3e4b_A ALGK; tetratricopeptide 99.5 3.7E-12 1.3E-16 128.0 23.2 311 47-376 9-353 (452)
56 3sf4_A G-protein-signaling mod 99.5 2.9E-12 9.8E-17 126.5 22.0 265 108-373 10-335 (406)
57 4a1s_A PINS, partner of inscut 99.5 7.9E-13 2.7E-17 131.1 17.8 260 113-374 54-372 (411)
58 3ro2_A PINS homolog, G-protein 99.5 3.2E-12 1.1E-16 122.3 20.9 263 110-374 8-332 (338)
59 2h6f_A Protein farnesyltransfe 99.5 5.2E-12 1.8E-16 123.4 22.1 225 143-374 98-348 (382)
60 3sf4_A G-protein-signaling mod 99.4 2.5E-12 8.5E-17 126.9 18.4 295 39-362 7-364 (406)
61 4abn_A Tetratricopeptide repea 99.4 2.2E-12 7.7E-17 130.5 17.1 192 175-371 100-318 (474)
62 3vtx_A MAMA; tetratricopeptide 99.4 4.6E-11 1.6E-15 104.1 21.8 163 207-374 4-170 (184)
63 4a1s_A PINS, partner of inscut 99.4 6.9E-12 2.4E-16 124.3 18.1 266 45-342 52-374 (411)
64 2ond_A Cleavage stimulation fa 99.4 1.5E-10 5.2E-15 110.0 25.9 218 124-345 33-275 (308)
65 3ro2_A PINS homolog, G-protein 99.4 9.5E-12 3.2E-16 118.9 17.6 98 245-342 225-334 (338)
66 3nf1_A KLC 1, kinesin light ch 99.4 2.6E-12 8.8E-17 121.8 12.3 243 106-373 26-306 (311)
67 3vtx_A MAMA; tetratricopeptide 99.4 5E-11 1.7E-15 103.8 19.1 167 175-345 3-175 (184)
68 3nf1_A KLC 1, kinesin light ch 99.3 6E-12 2E-16 119.3 12.6 242 73-343 24-310 (311)
69 3ulq_A Response regulator aspa 99.3 4.1E-11 1.4E-15 117.7 18.7 195 178-373 144-367 (383)
70 2ond_A Cleavage stimulation fa 99.3 3E-10 1E-14 108.0 23.7 162 108-272 100-270 (308)
71 3ulq_A Response regulator aspa 99.3 1.3E-10 4.4E-15 114.1 21.5 229 113-341 109-369 (383)
72 4gyw_A UDP-N-acetylglucosamine 99.3 1.5E-10 5.1E-15 122.1 20.7 162 207-373 8-173 (723)
73 4e6h_A MRNA 3'-END-processing 99.3 6.4E-09 2.2E-13 108.5 32.7 369 4-375 64-571 (679)
74 1hz4_A MALT regulatory protein 99.3 4.6E-09 1.6E-13 102.5 29.3 260 114-373 21-321 (373)
75 3as5_A MAMA; tetratricopeptide 99.3 2.6E-10 8.8E-15 98.7 18.0 161 178-373 9-172 (186)
76 3q15_A PSP28, response regulat 99.2 4E-10 1.4E-14 110.5 20.2 220 152-372 111-363 (378)
77 3as5_A MAMA; tetratricopeptide 99.2 6.2E-10 2.1E-14 96.3 19.0 157 142-302 8-167 (186)
78 4abn_A Tetratricopeptide repea 99.2 1.7E-10 5.9E-15 116.6 17.4 209 57-271 84-320 (474)
79 3q15_A PSP28, response regulat 99.2 7.7E-09 2.6E-13 101.2 25.8 228 113-340 107-365 (378)
80 1hz4_A MALT regulatory protein 99.2 1.3E-08 4.5E-13 99.2 27.3 258 12-269 20-319 (373)
81 4i17_A Hypothetical protein; T 99.2 1.3E-09 4.5E-14 98.4 18.8 188 175-374 5-209 (228)
82 4i17_A Hypothetical protein; T 99.2 2E-09 6.8E-14 97.2 19.8 203 140-354 5-223 (228)
83 3edt_B KLC 2, kinesin light ch 99.1 5.5E-10 1.9E-14 103.8 12.6 32 342-373 249-280 (283)
84 4e6h_A MRNA 3'-END-processing 99.1 2.6E-07 8.7E-12 96.4 32.7 352 22-376 48-535 (679)
85 3edt_B KLC 2, kinesin light ch 99.0 8.9E-09 3.1E-13 95.5 18.2 199 142-340 43-281 (283)
86 3qky_A Outer membrane assembly 99.0 2E-08 6.8E-13 92.7 19.8 205 175-420 13-247 (261)
87 1qqe_A Vesicular transport pro 99.0 7.7E-09 2.6E-13 97.3 17.2 216 91-343 32-272 (292)
88 4gyw_A UDP-N-acetylglucosamine 99.0 5.8E-09 2E-13 110.0 17.9 159 76-236 9-173 (723)
89 3mv2_B Coatomer subunit epsilo 99.0 1.3E-07 4.5E-12 87.9 22.7 137 161-303 85-235 (310)
90 3qky_A Outer membrane assembly 99.0 3.3E-08 1.1E-12 91.2 18.8 203 140-363 13-250 (261)
91 3mv2_B Coatomer subunit epsilo 99.0 7.1E-08 2.4E-12 89.7 20.0 142 126-270 85-238 (310)
92 2fo7_A Synthetic consensus TPR 98.9 2.8E-08 9.7E-13 80.5 15.5 129 210-373 3-131 (136)
93 1qqe_A Vesicular transport pro 98.9 9.2E-08 3.2E-12 89.9 21.1 197 77-306 38-267 (292)
94 2fo7_A Synthetic consensus TPR 98.9 5.1E-08 1.7E-12 79.0 16.4 123 179-304 3-128 (136)
95 2yhc_A BAMD, UPF0169 lipoprote 98.9 1.4E-07 4.6E-12 85.0 20.0 179 178-376 5-215 (225)
96 3qou_A Protein YBBN; thioredox 98.9 6.8E-08 2.3E-12 90.6 18.2 173 195-372 104-282 (287)
97 4ga2_A E3 SUMO-protein ligase 98.9 4.1E-09 1.4E-13 88.5 8.2 137 219-360 8-149 (150)
98 2pzi_A Probable serine/threoni 98.9 9.2E-09 3.2E-13 108.7 12.0 167 188-360 402-583 (681)
99 3rjv_A Putative SEL1 repeat pr 98.8 4.6E-07 1.6E-11 80.7 19.4 161 207-376 17-199 (212)
100 2vsy_A XCC0866; transferase, g 98.8 9.1E-08 3.1E-12 99.0 16.6 158 190-352 2-169 (568)
101 3dra_A Protein farnesyltransfe 98.8 5.6E-06 1.9E-10 77.6 27.0 226 119-351 45-299 (306)
102 2pzi_A Probable serine/threoni 98.8 2.1E-07 7.2E-12 98.3 19.3 188 153-347 402-609 (681)
103 3urz_A Uncharacterized protein 98.8 2.7E-07 9.3E-12 81.8 16.6 184 110-319 7-198 (208)
104 3gyz_A Chaperone protein IPGC; 98.8 7.7E-08 2.6E-12 80.5 12.2 102 274-375 30-134 (151)
105 2vsy_A XCC0866; transferase, g 98.8 2.1E-07 7.3E-12 96.2 18.1 146 155-305 2-154 (568)
106 2ifu_A Gamma-SNAP; membrane fu 98.7 5E-07 1.7E-11 85.5 18.8 220 120-367 4-254 (307)
107 4ga2_A E3 SUMO-protein ligase 98.7 3.6E-08 1.2E-12 82.6 9.4 121 250-373 4-128 (150)
108 2vgx_A Chaperone SYCD; alterna 98.7 9.2E-08 3.1E-12 79.9 11.4 101 274-374 15-118 (148)
109 3qou_A Protein YBBN; thioredox 98.7 6.8E-07 2.3E-11 83.7 18.7 164 139-304 114-280 (287)
110 2r5s_A Uncharacterized protein 98.7 2.3E-07 7.9E-12 79.8 14.2 75 298-372 93-171 (176)
111 3urz_A Uncharacterized protein 98.7 3.5E-07 1.2E-11 81.1 15.2 126 213-344 59-190 (208)
112 3dra_A Protein farnesyltransfe 98.7 5.8E-06 2E-10 77.5 24.1 212 157-373 48-286 (306)
113 3u3w_A Transcriptional activat 98.7 2.3E-06 7.8E-11 80.3 21.6 159 214-372 81-264 (293)
114 2r5s_A Uncharacterized protein 98.7 3.8E-07 1.3E-11 78.4 14.7 155 78-235 8-171 (176)
115 4gco_A Protein STI-1; structur 98.7 3.4E-07 1.2E-11 74.0 13.3 112 239-353 8-123 (126)
116 1hh8_A P67PHOX, NCF-2, neutrop 98.7 6.5E-07 2.2E-11 79.3 16.4 125 246-375 9-151 (213)
117 2uy1_A Cleavage stimulation fa 98.6 3.1E-05 1.1E-09 78.1 29.5 385 8-427 17-455 (493)
118 3rjv_A Putative SEL1 repeat pr 98.6 1.7E-06 5.8E-11 76.9 18.1 171 162-342 6-199 (212)
119 4gco_A Protein STI-1; structur 98.6 3E-07 1E-11 74.3 11.9 101 274-374 7-110 (126)
120 2c2l_A CHIP, carboxy terminus 98.6 1.7E-07 5.7E-12 87.5 11.2 190 177-374 4-199 (281)
121 2qfc_A PLCR protein; TPR, HTH, 98.6 1.3E-06 4.6E-11 81.9 17.5 163 210-372 77-264 (293)
122 2xcb_A PCRH, regulatory protei 98.6 6.7E-07 2.3E-11 73.9 13.7 101 274-374 12-115 (142)
123 2yhc_A BAMD, UPF0169 lipoprote 98.6 3.6E-06 1.2E-10 75.5 19.5 183 142-345 4-218 (225)
124 1a17_A Serine/threonine protei 98.6 1.4E-06 4.7E-11 73.5 15.8 126 245-373 15-145 (166)
125 2uy1_A Cleavage stimulation fa 98.6 6.7E-06 2.3E-10 83.0 23.1 324 19-371 7-380 (493)
126 1hh8_A P67PHOX, NCF-2, neutrop 98.6 2.6E-06 8.8E-11 75.4 17.4 146 179-344 8-154 (213)
127 1na0_A Designed protein CTPR3; 98.6 1.5E-06 5.2E-11 69.0 13.9 114 244-359 10-125 (125)
128 2vyi_A SGTA protein; chaperone 98.5 1.5E-06 5.2E-11 69.7 13.4 116 243-361 12-130 (131)
129 2lni_A Stress-induced-phosphop 98.5 1.5E-06 5.2E-11 70.1 13.3 114 244-360 17-133 (133)
130 1p5q_A FKBP52, FK506-binding p 98.5 1.1E-06 3.6E-11 84.4 14.2 94 279-372 196-292 (336)
131 3u3w_A Transcriptional activat 98.5 1.1E-05 3.6E-10 75.6 20.4 158 114-271 82-265 (293)
132 2ifu_A Gamma-SNAP; membrane fu 98.5 1.2E-06 4.1E-11 82.8 13.4 197 154-372 3-222 (307)
133 4f3v_A ESX-1 secretion system 98.5 6.3E-07 2.2E-11 82.2 10.7 134 213-351 107-247 (282)
134 2qfc_A PLCR protein; TPR, HTH, 98.5 7.8E-06 2.7E-10 76.6 17.7 162 179-340 77-266 (293)
135 3upv_A Heat shock protein STI1 98.4 2.5E-06 8.7E-11 68.5 11.8 96 279-374 4-101 (126)
136 2e2e_A Formate-dependent nitri 98.4 1.4E-06 4.6E-11 74.9 10.7 116 256-374 23-144 (177)
137 3gw4_A Uncharacterized protein 98.4 2.2E-06 7.7E-11 75.0 12.3 82 88-169 4-93 (203)
138 1wao_1 Serine/threonine protei 98.4 3.2E-06 1.1E-10 85.1 14.9 116 252-370 15-135 (477)
139 3q7a_A Farnesyltransferase alp 98.4 0.00024 8.2E-09 67.3 26.7 178 110-294 57-257 (349)
140 2kck_A TPR repeat; tetratricop 98.4 2.3E-06 7.8E-11 66.6 10.9 98 278-375 5-107 (112)
141 3gyz_A Chaperone protein IPGC; 98.4 4.4E-06 1.5E-10 69.7 12.8 104 239-345 31-138 (151)
142 1hxi_A PEX5, peroxisome target 98.4 2.5E-06 8.6E-11 68.2 10.6 94 281-374 19-114 (121)
143 3gw4_A Uncharacterized protein 98.4 9.9E-06 3.4E-10 70.8 15.4 151 189-339 4-175 (203)
144 3q49_B STIP1 homology and U bo 98.4 5.9E-06 2E-10 67.2 12.8 97 278-374 8-106 (137)
145 1na0_A Designed protein CTPR3; 98.4 5.5E-06 1.9E-10 65.7 12.3 93 6-100 9-101 (125)
146 2fbn_A 70 kDa peptidylprolyl i 98.4 6.6E-06 2.3E-10 72.0 13.7 171 184-375 11-187 (198)
147 1a17_A Serine/threonine protei 98.3 1.1E-05 3.8E-10 67.8 14.3 126 210-339 15-145 (166)
148 3sz7_A HSC70 cochaperone (SGT) 98.3 4.6E-06 1.6E-10 70.6 11.7 92 281-372 13-106 (164)
149 2e2e_A Formate-dependent nitri 98.3 8E-06 2.7E-10 69.9 13.3 126 219-348 21-152 (177)
150 1elw_A TPR1-domain of HOP; HOP 98.3 1.5E-05 5.3E-10 62.3 13.9 107 245-354 6-115 (118)
151 1elw_A TPR1-domain of HOP; HOP 98.3 7.9E-06 2.7E-10 64.1 12.1 98 278-375 3-102 (118)
152 4f3v_A ESX-1 secretion system 98.3 2E-05 6.7E-10 72.3 16.1 182 189-375 18-238 (282)
153 2vgx_A Chaperone SYCD; alterna 98.3 2.8E-06 9.7E-11 70.7 9.7 102 244-348 22-126 (148)
154 2xcb_A PCRH, regulatory protei 98.3 8.4E-06 2.9E-10 67.1 12.4 105 245-352 20-127 (142)
155 2lni_A Stress-induced-phosphop 98.3 1.2E-05 4E-10 64.8 12.5 114 4-119 14-130 (133)
156 3upv_A Heat shock protein STI1 98.3 1.5E-05 5.1E-10 63.9 13.0 108 245-355 6-122 (126)
157 3sz7_A HSC70 cochaperone (SGT) 98.3 1.6E-05 5.5E-10 67.1 13.7 107 243-352 11-120 (164)
158 2dba_A Smooth muscle cell asso 98.3 2E-05 6.8E-10 64.7 14.1 108 244-354 29-142 (148)
159 2c2l_A CHIP, carboxy terminus 98.2 4.1E-06 1.4E-10 78.1 10.1 182 109-306 6-197 (281)
160 3dss_A Geranylgeranyl transfer 98.2 0.00037 1.3E-08 65.7 23.3 188 158-351 90-315 (331)
161 3dss_A Geranylgeranyl transfer 98.2 0.00046 1.6E-08 65.0 23.9 178 193-374 90-304 (331)
162 3q7a_A Farnesyltransferase alp 98.2 0.00063 2.2E-08 64.4 24.6 179 9-192 57-257 (349)
163 2dba_A Smooth muscle cell asso 98.2 2.3E-05 7.9E-10 64.3 13.2 97 278-374 27-128 (148)
164 2vyi_A SGTA protein; chaperone 98.2 1.6E-05 5.6E-10 63.4 12.0 97 278-374 11-109 (131)
165 4gcn_A Protein STI-1; structur 98.2 1.2E-05 4.1E-10 64.8 10.6 94 280-373 9-111 (127)
166 3q49_B STIP1 homology and U bo 98.2 2.7E-05 9.1E-10 63.2 12.8 99 242-343 8-109 (137)
167 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 3E-05 1E-09 77.6 15.4 129 245-373 270-414 (457)
168 1p5q_A FKBP52, FK506-binding p 98.1 3.2E-05 1.1E-09 73.9 13.9 143 106-271 146-293 (336)
169 2fbn_A 70 kDa peptidylprolyl i 98.1 7.5E-06 2.5E-10 71.7 7.8 160 82-263 10-176 (198)
170 1elr_A TPR2A-domain of HOP; HO 98.1 2.2E-05 7.5E-10 62.7 10.0 95 280-374 5-108 (131)
171 1wao_1 Serine/threonine protei 98.1 4.6E-05 1.6E-09 76.6 14.3 114 185-303 14-134 (477)
172 3rkv_A Putative peptidylprolyl 98.1 5E-05 1.7E-09 63.8 12.4 64 311-374 63-126 (162)
173 4b4t_Q 26S proteasome regulato 98.0 5.8E-05 2E-09 74.7 14.6 162 211-372 58-243 (434)
174 4gcn_A Protein STI-1; structur 98.0 5.3E-05 1.8E-09 60.9 11.8 90 181-270 12-110 (127)
175 3k9i_A BH0479 protein; putativ 98.0 6.5E-06 2.2E-10 65.2 6.0 83 292-374 3-90 (117)
176 1ihg_A Cyclophilin 40; ppiase 98.0 6E-05 2.1E-09 73.0 13.7 90 278-367 272-363 (370)
177 4b4t_Q 26S proteasome regulato 98.0 0.00015 5.1E-09 71.6 17.0 161 145-305 58-242 (434)
178 2xev_A YBGF; tetratricopeptide 98.0 4.5E-05 1.5E-09 61.1 10.8 90 285-374 8-105 (129)
179 3ro3_A PINS homolog, G-protein 98.0 6.8E-05 2.3E-09 62.2 12.1 62 312-373 90-157 (164)
180 1hxi_A PEX5, peroxisome target 98.0 5.7E-05 1.9E-09 60.2 10.9 96 247-345 21-119 (121)
181 2hr2_A Hypothetical protein; a 98.0 3.8E-05 1.3E-09 63.7 9.9 62 312-373 58-130 (159)
182 1elr_A TPR2A-domain of HOP; HO 98.0 5.4E-05 1.8E-09 60.4 10.8 106 247-355 8-122 (131)
183 2kck_A TPR repeat; tetratricop 97.9 5.7E-05 1.9E-09 58.4 10.0 92 44-136 9-106 (112)
184 2xev_A YBGF; tetratricopeptide 97.9 0.00023 7.8E-09 56.8 13.8 100 250-349 9-114 (129)
185 3ro3_A PINS homolog, G-protein 97.9 7.1E-05 2.4E-09 62.1 10.7 96 245-340 51-158 (164)
186 3rkv_A Putative peptidylprolyl 97.9 5E-05 1.7E-09 63.8 9.5 76 279-354 63-141 (162)
187 2if4_A ATFKBP42; FKBP-like, al 97.9 3.5E-05 1.2E-09 73.8 9.3 147 208-374 179-328 (338)
188 2hr2_A Hypothetical protein; a 97.8 5.2E-05 1.8E-09 62.9 8.1 71 281-351 59-142 (159)
189 3k9i_A BH0479 protein; putativ 97.8 3.6E-05 1.2E-09 60.8 6.9 91 256-347 3-97 (117)
190 2l6j_A TPR repeat-containing p 97.8 6.7E-05 2.3E-09 58.1 8.4 92 278-369 3-102 (111)
191 3ma5_A Tetratricopeptide repea 97.8 0.0001 3.6E-09 56.3 9.2 66 309-374 5-70 (100)
192 3n71_A Histone lysine methyltr 97.8 0.00014 4.7E-09 72.9 12.5 125 252-376 318-466 (490)
193 1dce_A Protein (RAB geranylger 97.8 0.0012 4.2E-08 67.6 19.7 167 193-363 45-244 (567)
194 2if4_A ATFKBP42; FKBP-like, al 97.8 9E-05 3.1E-09 70.9 10.3 149 177-345 179-333 (338)
195 1na3_A Designed protein CTPR2; 97.8 0.0002 6.8E-09 53.0 9.8 81 279-359 9-91 (91)
196 1kt0_A FKBP51, 51 kDa FK506-bi 97.7 0.00056 1.9E-08 68.3 14.4 85 244-331 318-405 (457)
197 2kat_A Uncharacterized protein 97.7 0.00018 6.2E-09 56.3 8.5 77 298-374 4-82 (115)
198 1ihg_A Cyclophilin 40; ppiase 97.6 0.00038 1.3E-08 67.4 12.3 113 244-374 224-336 (370)
199 1zu2_A Mitochondrial import re 97.5 0.00012 4.2E-09 60.5 6.1 85 291-375 14-121 (158)
200 2l6j_A TPR repeat-containing p 97.4 0.00057 2E-08 52.6 8.5 66 310-375 3-68 (111)
201 3bee_A Putative YFRE protein; 97.4 0.0012 4.2E-08 49.4 9.5 70 308-377 3-75 (93)
202 1klx_A Cysteine rich protein B 97.4 0.0028 9.7E-08 51.4 12.3 109 223-340 10-126 (138)
203 3n71_A Histone lysine methyltr 97.3 0.0007 2.4E-08 67.8 9.6 119 154-272 321-464 (490)
204 1zu2_A Mitochondrial import re 97.2 0.0006 2.1E-08 56.3 6.6 51 295-345 62-125 (158)
205 1klx_A Cysteine rich protein B 97.2 0.0068 2.3E-07 49.1 13.0 113 257-377 9-129 (138)
206 2kat_A Uncharacterized protein 97.2 0.0026 8.8E-08 49.5 10.0 65 278-342 18-84 (115)
207 1dce_A Protein (RAB geranylger 97.2 0.016 5.4E-07 59.3 18.1 148 221-373 42-220 (567)
208 1na3_A Designed protein CTPR2; 97.2 0.0021 7.2E-08 47.2 8.7 82 5-88 8-89 (91)
209 3qwp_A SET and MYND domain-con 97.1 0.0012 4.2E-08 64.9 9.1 116 286-419 294-427 (429)
210 3mkq_A Coatomer beta'-subunit; 97.1 0.02 6.7E-07 61.4 18.6 153 16-203 609-762 (814)
211 3mkq_A Coatomer beta'-subunit; 96.8 0.032 1.1E-06 59.7 17.9 42 87-130 610-652 (814)
212 3ma5_A Tetratricopeptide repea 96.8 0.0054 1.8E-07 46.4 8.5 61 208-269 7-67 (100)
213 3qww_A SET and MYND domain-con 96.8 0.0017 5.7E-08 64.0 6.6 83 291-373 310-410 (433)
214 2kc7_A BFR218_protein; tetratr 96.8 0.0094 3.2E-07 44.6 9.5 64 285-348 6-72 (99)
215 2kc7_A BFR218_protein; tetratr 96.7 0.0051 1.7E-07 46.1 7.4 59 317-375 6-65 (99)
216 1wy6_A Hypothetical protein ST 96.7 0.16 5.6E-06 39.9 15.5 140 219-377 18-157 (172)
217 3qww_A SET and MYND domain-con 96.6 0.014 4.7E-07 57.4 11.9 93 255-347 310-423 (433)
218 1pc2_A Mitochondria fission pr 96.6 0.014 4.9E-07 47.5 9.6 66 309-374 30-100 (152)
219 3qwp_A SET and MYND domain-con 96.6 0.025 8.6E-07 55.5 13.1 100 250-349 294-414 (429)
220 3ly7_A Transcriptional activat 96.5 0.1 3.5E-06 49.4 16.2 47 205-253 191-243 (372)
221 3ly7_A Transcriptional activat 96.1 0.14 4.6E-06 48.6 14.7 61 207-269 276-336 (372)
222 3mkq_B Coatomer subunit alpha; 95.8 0.34 1.2E-05 40.4 14.4 105 83-204 12-116 (177)
223 3bee_A Putative YFRE protein; 95.7 0.11 3.8E-06 38.5 10.1 77 277-354 4-85 (93)
224 2v5f_A Prolyl 4-hydroxylase su 95.7 0.074 2.5E-06 40.4 9.4 74 278-351 4-86 (104)
225 3mkq_B Coatomer subunit alpha; 95.6 0.34 1.2E-05 40.5 13.4 129 185-337 13-141 (177)
226 3u64_A Protein TP_0956; tetrat 95.1 0.082 2.8E-06 48.0 8.8 87 295-381 179-276 (301)
227 1pc2_A Mitochondria fission pr 94.5 0.19 6.5E-06 40.9 8.7 70 277-346 30-106 (152)
228 1nzn_A CGI-135 protein, fissio 94.5 0.25 8.7E-06 38.6 9.1 87 257-345 15-108 (126)
229 1qsa_A Protein (soluble lytic 94.4 5.1 0.00017 41.0 28.5 309 16-339 16-347 (618)
230 3lvg_A Clathrin heavy chain 1; 93.3 0.039 1.3E-06 53.7 2.9 211 6-229 54-325 (624)
231 4gns_B Protein CSD3, chitin bi 93.3 0.46 1.6E-05 49.7 11.1 54 319-372 345-398 (754)
232 2v5f_A Prolyl 4-hydroxylase su 93.2 0.39 1.3E-05 36.2 8.1 65 310-374 4-75 (104)
233 2ff4_A Probable regulatory pro 93.0 1.1 3.7E-05 43.2 12.7 69 313-381 173-246 (388)
234 3lvg_A Clathrin heavy chain 1; 92.9 0.0016 5.5E-08 63.1 -7.2 237 75-331 53-324 (624)
235 1wy6_A Hypothetical protein ST 92.2 3.5 0.00012 32.5 12.6 83 89-173 74-156 (172)
236 1y8m_A FIS1; mitochondria, unk 91.9 4 0.00014 32.5 13.6 65 309-373 37-105 (144)
237 4h7y_A Dual specificity protei 91.3 2.1 7.3E-05 34.4 10.1 99 1-101 8-119 (161)
238 1nzn_A CGI-135 protein, fissio 91.2 3.6 0.00012 32.1 11.2 80 223-305 16-100 (126)
239 4ady_A RPN2, 26S proteasome re 91.0 11 0.00036 40.5 17.9 20 217-236 569-588 (963)
240 2p58_C Putative type III secre 90.3 3.7 0.00013 30.2 9.6 87 156-247 21-107 (116)
241 2uwj_G Type III export protein 90.2 4.3 0.00015 29.8 10.0 89 54-147 19-107 (115)
242 4h7y_A Dual specificity protei 89.9 3.7 0.00013 33.0 10.3 38 104-142 10-53 (161)
243 2uwj_G Type III export protein 89.9 3.5 0.00012 30.3 9.2 88 156-248 20-107 (115)
244 2p58_C Putative type III secre 89.9 4.6 0.00016 29.7 10.2 89 54-147 20-108 (116)
245 3ffl_A Anaphase-promoting comp 89.3 2.7 9.3E-05 34.5 9.4 29 280-308 123-151 (167)
246 3lpz_A GET4 (YOR164C homolog); 88.5 15 0.00053 34.0 22.5 167 179-373 37-215 (336)
247 3u64_A Protein TP_0956; tetrat 87.9 1.5 5.2E-05 39.8 7.7 89 93-181 180-281 (301)
248 3lpz_A GET4 (YOR164C homolog); 87.6 18 0.0006 33.6 21.8 168 78-271 37-215 (336)
249 1v54_E Cytochrome C oxidase po 87.5 3.7 0.00013 30.4 8.1 64 223-288 25-88 (109)
250 2wpv_A GET4, UPF0363 protein Y 86.3 20 0.00069 32.9 20.9 169 78-272 35-217 (312)
251 2wpv_A GET4, UPF0363 protein Y 86.1 20 0.0007 32.8 22.9 169 179-373 35-216 (312)
252 3o48_A Mitochondria fission 1 84.1 14 0.00046 29.0 10.8 65 309-373 38-106 (134)
253 1v54_E Cytochrome C oxidase po 83.4 7.3 0.00025 28.9 7.9 48 305-352 39-86 (109)
254 2ff4_A Probable regulatory pro 83.0 9.8 0.00033 36.4 11.5 68 213-281 176-247 (388)
255 2y69_E Cytochrome C oxidase su 83.0 5.2 0.00018 31.4 7.4 64 223-288 68-131 (152)
256 4fhn_B Nucleoporin NUP120; pro 82.8 27 0.00091 38.8 16.3 165 79-261 815-989 (1139)
257 4gns_B Protein CSD3, chitin bi 82.7 6.1 0.00021 41.3 10.3 48 310-358 612-659 (754)
258 4fhn_B Nucleoporin NUP120; pro 81.2 37 0.0013 37.7 16.7 141 149-297 819-989 (1139)
259 3ffl_A Anaphase-promoting comp 80.0 22 0.00075 29.1 10.6 63 8-70 22-92 (167)
260 3txn_A 26S proteasome regulato 75.5 57 0.002 31.0 17.1 23 214-236 105-127 (394)
261 4b4t_P 26S proteasome regulato 73.8 68 0.0023 31.1 18.4 147 20-168 30-203 (445)
262 3esl_A Checkpoint serine/threo 73.6 34 0.0012 28.9 10.4 104 298-427 63-172 (202)
263 2qx5_A Nucleoporin NIC96; mRNA 73.2 87 0.003 32.1 16.0 32 279-310 533-569 (661)
264 3ltm_A Alpha-REP4; protein eng 72.8 42 0.0014 28.2 19.4 17 75-91 32-48 (211)
265 1wdy_A 2-5A-dependent ribonucl 72.6 38 0.0013 29.8 11.8 57 185-242 153-213 (285)
266 2y69_E Cytochrome C oxidase su 72.3 26 0.00087 27.6 8.4 60 56-115 68-130 (152)
267 3eiq_C Programmed cell death p 71.5 19 0.00066 33.7 9.4 65 180-244 220-289 (358)
268 1zbp_A Hypothetical protein VP 71.3 10 0.00035 33.8 7.0 57 288-344 6-64 (273)
269 4b4t_P 26S proteasome regulato 67.7 92 0.0031 30.1 21.2 95 211-305 140-244 (445)
270 4ady_A RPN2, 26S proteasome re 66.9 1.4E+02 0.0048 32.0 20.8 52 117-170 534-588 (963)
271 3o48_A Mitochondria fission 1 66.4 45 0.0015 26.1 9.1 35 311-345 78-112 (134)
272 1k1a_A B-cell lymphoma 3-encod 64.6 30 0.001 29.7 9.0 85 13-102 13-102 (241)
273 3ltj_A Alpharep-4; protein eng 64.2 61 0.0021 26.9 19.4 47 176-222 89-135 (201)
274 2l0z_A Glycoprotein G2; zinc-b 63.6 2.4 8.1E-05 25.0 0.9 13 501-513 16-29 (42)
275 1zbp_A Hypothetical protein VP 62.6 85 0.0029 28.0 12.2 50 219-269 8-57 (273)
276 2qx5_A Nucleoporin NIC96; mRNA 62.0 1.5E+02 0.005 30.5 16.4 44 8-53 155-198 (661)
277 4a1g_A Mitotic checkpoint seri 61.4 62 0.0021 26.0 9.6 49 330-378 84-134 (152)
278 4b4t_R RPN7, 26S proteasome re 60.2 36 0.0012 32.9 9.3 96 179-274 133-239 (429)
279 3eu9_A Huntingtin-interacting 59.3 18 0.00061 31.0 6.5 90 3-101 4-98 (240)
280 2nsz_A Programmed cell death p 58.8 45 0.0016 25.9 7.9 63 180-242 10-77 (129)
281 3txn_A 26S proteasome regulato 58.3 1.3E+02 0.0043 28.6 25.5 89 276-377 253-346 (394)
282 1y8m_A FIS1; mitochondria, unk 58.3 68 0.0023 25.4 11.3 34 312-345 78-111 (144)
283 3ltj_A Alpharep-4; protein eng 56.5 84 0.0029 26.0 20.4 153 75-236 27-179 (201)
284 4b4t_S RPN3, 26S proteasome re 56.2 1.4E+02 0.0049 29.4 12.5 61 177-237 231-299 (523)
285 4b4t_R RPN7, 26S proteasome re 55.4 41 0.0014 32.5 8.8 96 210-305 133-234 (429)
286 1k1a_A B-cell lymphoma 3-encod 55.4 56 0.0019 27.8 9.1 54 49-102 14-69 (241)
287 2wvi_A Mitotic checkpoint seri 54.3 87 0.003 25.5 9.6 49 330-378 79-129 (164)
288 2nsz_A Programmed cell death p 51.2 83 0.0028 24.3 9.1 63 79-141 10-77 (129)
289 1wdy_A 2-5A-dependent ribonucl 50.6 31 0.001 30.4 6.7 16 187-202 112-127 (285)
290 2ion_A PDCD4, programmed cell 50.4 42 0.0014 27.0 6.6 63 180-242 12-79 (152)
291 3jxi_A Vanilloid receptor-rela 49.1 20 0.00067 31.5 5.0 91 13-103 9-117 (260)
292 3hra_A Ankyrin repeat family p 47.2 66 0.0022 26.4 7.9 18 86-103 12-29 (201)
293 2d2s_A Exocyst complex compone 46.6 64 0.0022 28.1 7.7 87 215-305 25-117 (235)
294 2ion_A PDCD4, programmed cell 46.3 83 0.0028 25.2 7.8 63 79-141 12-79 (152)
295 2rfa_A Transient receptor pote 45.7 84 0.0029 26.5 8.6 149 12-173 6-182 (232)
296 3hra_A Ankyrin repeat family p 42.6 76 0.0026 26.0 7.6 152 15-176 11-172 (201)
297 3b7b_A Euchromatic histone-lys 41.7 51 0.0017 28.1 6.5 81 13-102 15-100 (237)
298 3kea_A K1L; tropism, ANK repea 41.6 77 0.0026 28.2 7.9 91 285-380 132-223 (285)
299 1n11_A Ankyrin; clathrin, BAND 41.3 1.5E+02 0.0053 28.0 10.5 15 413-427 358-372 (437)
300 1n11_A Ankyrin; clathrin, BAND 41.2 62 0.0021 30.9 7.6 332 12-379 17-371 (437)
301 2d2s_A Exocyst complex compone 40.0 1.1E+02 0.0039 26.5 8.3 23 113-135 24-46 (235)
302 3eiq_C Programmed cell death p 39.9 2.4E+02 0.0081 26.3 11.2 28 79-106 57-84 (358)
303 3bqo_A Telomeric repeat-bindin 39.7 1.4E+02 0.0047 25.1 8.0 52 295-346 94-152 (211)
304 2hgo_A CASSIICOLIN; toxin, dis 38.5 6.1 0.00021 20.1 -0.1 13 502-514 8-22 (27)
305 2k0q_A Putative uncharacterize 38.1 10 0.00035 25.5 0.9 22 490-511 8-29 (74)
306 3aji_A 26S proteasome non-ATPa 36.0 85 0.0029 26.4 7.0 85 12-101 9-95 (231)
307 1oyz_A Hypothetical protein YI 35.5 2.2E+02 0.0077 24.8 22.1 230 39-289 35-277 (280)
308 3qye_A TBC1 domain family memb 35.4 2.3E+02 0.008 25.8 10.3 141 10-157 153-309 (331)
309 1qc6_A EVH1 domain from ENA/VA 34.0 14 0.00047 29.0 1.2 40 462-509 44-87 (130)
310 3ygs_P Procaspase 9; apoptosis 33.9 57 0.0019 23.8 4.5 38 191-228 51-88 (97)
311 2pk8_A Uncharacterized protein 33.5 31 0.0011 24.8 2.7 47 402-456 13-59 (103)
312 4gq2_M Nucleoporin NUP120; bet 32.0 4.4E+02 0.015 28.3 13.0 127 82-222 816-950 (950)
313 1ug3_A EIF4GI, eukaryotic prot 30.5 2.7E+02 0.0091 25.6 9.7 59 80-138 15-77 (339)
314 3ljn_A Hypothetical protein; a 30.4 89 0.003 28.8 6.6 20 84-103 58-77 (364)
315 3ygs_P Procaspase 9; apoptosis 30.3 57 0.0019 23.8 4.0 38 90-127 51-88 (97)
316 2fe3_A Peroxide operon regulat 29.8 1.4E+02 0.0047 23.5 6.6 63 232-296 11-73 (145)
317 4aez_C MAD3, mitotic spindle c 29.5 1.7E+02 0.0057 25.2 7.3 51 328-378 131-183 (223)
318 2p1h_A APAF-1, apoptotic prote 29.2 1.5E+02 0.0051 21.1 6.2 62 61-126 25-86 (94)
319 2zu6_B Programmed cell death p 28.9 3.3E+02 0.011 24.7 13.3 26 80-105 7-32 (307)
320 4b4t_S RPN3, 26S proteasome re 28.9 1.6E+02 0.0055 29.0 8.0 60 244-305 232-296 (523)
321 2xig_A Ferric uptake regulatio 28.8 1.9E+02 0.0065 22.8 7.3 62 233-296 17-78 (150)
322 2p1h_A APAF-1, apoptotic prote 28.6 1.6E+02 0.0055 21.0 6.9 62 162-227 25-86 (94)
323 1oyz_A Hypothetical protein YI 28.0 3E+02 0.01 23.9 22.9 20 102-121 63-82 (280)
324 4gq2_M Nucleoporin NUP120; bet 27.9 5.3E+02 0.018 27.7 12.8 105 249-359 816-950 (950)
325 3kea_A K1L; tropism, ANK repea 27.9 98 0.0034 27.5 6.1 177 52-245 39-225 (285)
326 2yru_A Steroid receptor RNA ac 27.1 89 0.003 23.8 4.7 43 129-171 48-90 (118)
327 3eu9_A Huntingtin-interacting 26.6 1.3E+02 0.0045 25.2 6.6 82 12-102 45-132 (240)
328 2lo3_A SAGA-associated factor 25.6 16 0.00055 21.8 0.2 11 470-480 16-26 (44)
329 4a1g_A Mitotic checkpoint seri 25.1 1.5E+02 0.005 23.8 5.8 78 37-117 64-142 (152)
330 2fe3_A Peroxide operon regulat 24.9 1.9E+02 0.0065 22.6 6.6 59 133-192 13-71 (145)
331 2pnn_A Transient receptor pote 24.8 1E+02 0.0034 27.0 5.6 98 4-103 9-125 (273)
332 4ets_A Ferric uptake regulatio 24.8 1.6E+02 0.0056 23.7 6.3 71 225-296 14-86 (162)
333 2rfa_A Transient receptor pote 24.7 2.9E+02 0.01 22.9 8.5 17 85-101 9-25 (232)
334 3ljn_A Hypothetical protein; a 24.4 1.9E+02 0.0065 26.5 7.7 81 288-370 179-266 (364)
335 3qye_A TBC1 domain family memb 23.1 4.2E+02 0.015 24.0 11.0 42 163-204 209-250 (331)
336 2yru_A Steroid receptor RNA ac 22.5 1.2E+02 0.0043 23.0 4.7 42 230-271 48-89 (118)
337 2etb_A Transient receptor pote 22.1 1.1E+02 0.0037 26.4 5.2 92 12-103 5-114 (256)
338 1bd8_A P19INK4D CDK4/6 inhibit 22.1 81 0.0028 24.6 4.0 17 15-31 8-24 (156)
339 2w57_A Ferric uptake regulatio 21.8 2.8E+02 0.0095 21.8 7.1 62 131-193 6-68 (150)
340 2xig_A Ferric uptake regulatio 21.0 2.8E+02 0.0097 21.8 6.9 59 133-192 18-76 (150)
341 2r9g_A AAA ATPase, central reg 20.6 3.8E+02 0.013 22.5 9.0 89 113-202 17-113 (204)
342 2zu6_B Programmed cell death p 20.4 3.1E+02 0.011 24.8 7.8 23 10-32 7-29 (307)
343 3bu8_A Telomeric repeat-bindin 20.1 4E+02 0.014 22.7 7.6 69 259-327 88-163 (235)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.5e-35 Score=307.10 Aligned_cols=366 Identities=11% Similarity=-0.014 Sum_probs=322.7
Q ss_pred CCCCcchHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHH
Q 040365 2 PVSDLVSWNTVIVGLARNGLYEEALNIVRQMGNVNLKPDSFTLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSS 81 (514)
Q Consensus 2 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 81 (514)
|.+++..|+.++..|.+.|++++|+.+|++|.. ..|+..++..++.+|...|++++|.++++.+... +++..+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~ 155 (597)
T 2xpi_A 80 SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYL 155 (597)
T ss_dssp --CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHH
Confidence 457889999999999999999999999999985 4688899999999999999999999999988644 788999999
Q ss_pred HHHHHHHCCCHHHHHHHHccCCCC-------------------ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCC----
Q 040365 82 LINMYAKCARVEDSHRLFCLLPVK-------------------DAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKI---- 138 (514)
Q Consensus 82 li~~~~~~g~~~~A~~~f~~~~~~-------------------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---- 138 (514)
++.+|.++|++++|.++|+++... +..+|+.++.+|.+.|++++|+++|++|.+.+.
T Consensus 156 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 235 (597)
T 2xpi_A 156 AAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYE 235 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhH
Confidence 999999999999999999965433 478999999999999999999999999865431
Q ss_pred ------------------------------------------------------------------CCCHHHHHHHHHHH
Q 040365 139 ------------------------------------------------------------------KPRHVSFSSIMPAC 152 (514)
Q Consensus 139 ------------------------------------------------------------------~p~~~t~~~ll~~~ 152 (514)
+++..++..++.++
T Consensus 236 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 315 (597)
T 2xpi_A 236 AFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTL 315 (597)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHH
Confidence 26777888888999
Q ss_pred hccCChHHHHHHHHHHHHcCC---------------------------------CCcHHHHHHHHHHHHhcCCHHHHHHH
Q 040365 153 AHLTTLHLGKQLHGCIIRNGF---------------------------------DDNMFIASSLLDMYAKCGNIRLARCI 199 (514)
Q Consensus 153 ~~~~~~~~a~~~~~~~~~~~~---------------------------------~~~~~~~~~li~~y~k~g~~~~A~~~ 199 (514)
.+.|++++|.++++.+.+.+. +.+..+++.++.+|.++|++++|.++
T Consensus 316 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 395 (597)
T 2xpi_A 316 FVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRY 395 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHH
Confidence 999999999999998876531 34577888899999999999999999
Q ss_pred HHhCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCC
Q 040365 200 FDKMD---LHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIA 276 (514)
Q Consensus 200 ~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 276 (514)
|+++. ..+..+|+.++.+|.+.|++++|+++|+++.+.+ +++..++..++.+|.+.|++++|.++|+.+.+. .+
T Consensus 396 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~ 472 (597)
T 2xpi_A 396 FSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQ 472 (597)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CC
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence 99874 4578899999999999999999999999998863 347789999999999999999999999999754 23
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch
Q 040365 277 PSFEHYAAVADLLGRAGKLQEAYEFISNM-------HAGPT--ENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGA 347 (514)
Q Consensus 277 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 347 (514)
.+..+|..++.+|.+.|++++|.++|+++ +..|+ ..+|..++.+|...|++++|...++++.+.+|+++.+
T Consensus 473 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 552 (597)
T 2xpi_A 473 YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANV 552 (597)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHH
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHH
Confidence 36889999999999999999999999987 33677 7899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccChhHHHHHHHHHHhC
Q 040365 348 YVILSNTYAAARRWKDAASLRVFMRNK 374 (514)
Q Consensus 348 ~~~l~~~~~~~g~~~~a~~~~~~m~~~ 374 (514)
|..++.+|.+.|++++|.+.++++.+.
T Consensus 553 ~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 553 HTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999875
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.3e-31 Score=278.96 Aligned_cols=297 Identities=9% Similarity=-0.026 Sum_probs=239.9
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHCCCHHHHHHHHccCC---CCChhHHHHHHHHHHHCCChhHHHHHHH
Q 040365 55 VDVIKGKEIHGYAIRHGLDANVCIGSSLINMYAKCARVEDSHRLFCLLP---VKDAISWNSIIAGCVQNGLFDEGLKFFR 131 (514)
Q Consensus 55 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~ 131 (514)
|++++|.++++.+.+. +++..+++.++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|.++|+
T Consensus 286 g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 363 (597)
T 2xpi_A 286 DELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISN 363 (597)
T ss_dssp HHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHH
T ss_pred chHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3334444444433332 3455566666666666666666666666553 2345556666666666666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCC---CCCh
Q 040365 132 QMLIAKIKPRHVSFSSIMPACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMD---LHDI 208 (514)
Q Consensus 132 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~d~ 208 (514)
++.+. .+.+..++..+...|.+.|++++|.++++.+.+.. +.+..+++.++.+|.+.|++++|.++|+++. ..+.
T Consensus 364 ~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 441 (597)
T 2xpi_A 364 DLVDR-HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTH 441 (597)
T ss_dssp HHHHH-CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCS
T ss_pred HHHhh-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence 66543 24567889999999999999999999999998865 5678899999999999999999999999875 4578
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhc---CCCCC--HhHHH
Q 040365 209 VSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDY---GIAPS--FEHYA 283 (514)
Q Consensus 209 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~--~~~~~ 283 (514)
.+|+.++.+|.+.|++++|+++|+++.+.. +.+..+|..++..|.+.|++++|.++|+.+.+.. +..|+ ..+|.
T Consensus 442 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~ 520 (597)
T 2xpi_A 442 LPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWA 520 (597)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHH
Confidence 999999999999999999999999999863 3478899999999999999999999999996643 66787 78999
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 040365 284 AVADLLGRAGKLQEAYEFISNMH--AGPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYA 356 (514)
Q Consensus 284 ~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 356 (514)
.++.+|.+.|++++|.++++++. .+.+..+|..+..+|...|++++|...++++++++|+++..+..|.++|.
T Consensus 521 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 521 NLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 99999999999999999999874 23588999999999999999999999999999999999999999988774
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=6.4e-30 Score=259.24 Aligned_cols=212 Identities=13% Similarity=0.134 Sum_probs=169.5
Q ss_pred hHHHHHHHHHhhCCCCCChh-hHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHCCCHHHHHHHHcc
Q 040365 23 EEALNIVRQMGNVNLKPDSF-TLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSSLINMYAKCARVEDSHRLFCL 101 (514)
Q Consensus 23 ~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~ 101 (514)
..+..+.+.+.+.++.+.+. .++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+...++
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------ 80 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------ 80 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS------
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh------
Confidence 44566777888777766544 58888999999999999999999999999999999999999999887754321
Q ss_pred CCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHHHHH
Q 040365 102 LPVKDAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLGKQLHGCIIRNGFDDNMFIAS 181 (514)
Q Consensus 102 ~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 181 (514)
.+.+..++|.++|++|...|+.||..||+++|.+|++.|++++|.+++++|.+.|+.||..+||
T Consensus 81 ----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn 144 (501)
T 4g26_A 81 ----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYG 144 (501)
T ss_dssp ----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred ----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceeh
Confidence 1345578899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 040365 182 SLLDMYAKCGNIRLARCIFDKMD----LHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHA 256 (514)
Q Consensus 182 ~li~~y~k~g~~~~A~~~~~~m~----~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 256 (514)
+||.+|++.|++++|.++|++|. .||..+|++||.+|++.|+.++|.++|++|.+.|..|+..||+.++..+...
T Consensus 145 ~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 145 PALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999988888888888885 6788888888888888888888888888888888888888888888877653
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=1.6e-29 Score=256.25 Aligned_cols=197 Identities=14% Similarity=0.170 Sum_probs=175.4
Q ss_pred HHHHHccCCCC-----ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC---------hHH
Q 040365 95 SHRLFCLLPVK-----DAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTT---------LHL 160 (514)
Q Consensus 95 A~~~f~~~~~~-----d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~---------~~~ 160 (514)
+..+++.+.++ ....++.+|++|++.|++++|+++|++|.+.|++||..||+++|.+|++.+. ++.
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 44444555432 2346888999999999999999999999999999999999999999987654 688
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 040365 161 GKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMD----LHDIVSWTAVIMGNALHGNAHDAISLFEQMEK 236 (514)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~----~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 236 (514)
|.++|++|.+.|+.||..+||+||++|++.|++++|.++|++|. .||..+||++|.+|++.|+.++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999996 68999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhc
Q 040365 237 DGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRA 292 (514)
Q Consensus 237 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 292 (514)
.|+.||..||++||.+|++.|++++|.++|++|.+ .++.|+..+|+.+++.|...
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~-~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRD-LVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HTSSBCHHHHHHHHHHHHSH
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHH-hCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999955 59999999999999998764
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=4.5e-26 Score=225.63 Aligned_cols=353 Identities=16% Similarity=0.080 Sum_probs=310.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHCCC
Q 040365 12 VIVGLARNGLYEEALNIVRQMGNVNLKPDSFTLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSSLINMYAKCAR 91 (514)
Q Consensus 12 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 91 (514)
+...+.+.|++++|+..+..+.+.. +.+...+..+...+...|++++|...+..+++.. +.+..++..+...|.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 3456788999999999999988753 3344566667777889999999999999998875 6788899999999999999
Q ss_pred HHHHHHHHccCC---CCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHH
Q 040365 92 VEDSHRLFCLLP---VKDAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPR-HVSFSSIMPACAHLTTLHLGKQLHGC 167 (514)
Q Consensus 92 ~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~ 167 (514)
+++|...|+++. ..+..+|..+..++.+.|++++|++.|+++.+. .|+ ...+..+...+...|++++|.+.+..
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999875 335668999999999999999999999999885 354 44566777888999999999999999
Q ss_pred HHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CH
Q 040365 168 IIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMD---LHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKP-NS 243 (514)
Q Consensus 168 ~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~ 243 (514)
+++.. +.+..+++.+...|.+.|++++|...|+++. ..+...|..+...+...|++++|+..|++.... .| +.
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~ 237 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCH
Confidence 99875 5568899999999999999999999999985 446678999999999999999999999999885 45 46
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 040365 244 VAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAP-SFEHYAAVADLLGRAGKLQEAYEFISNMH--AGPTENVWLTLLSA 320 (514)
Q Consensus 244 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~ 320 (514)
.++..+..++...|++++|...|+.+.+. .| +...|..+...+.+.|++++|.+.++++. .+++..+|..+...
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Confidence 78899999999999999999999999753 45 57889999999999999999999999874 34678899999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHhC
Q 040365 321 CRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRNK 374 (514)
Q Consensus 321 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 374 (514)
+...|++++|...++++++..|+++.++..++.+|.+.|++++|.+.++++.+.
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999763
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=4.1e-25 Score=218.66 Aligned_cols=348 Identities=11% Similarity=0.013 Sum_probs=306.8
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 040365 5 DLVSWNTVIVGLARNGLYEEALNIVRQMGNVNLKPDSFTLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSSLIN 84 (514)
Q Consensus 5 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 84 (514)
+...+..+...+.+.|++++|...++...... +.+..+|..+..++...|++++|...++.+++.. +.+..++..+..
T Consensus 32 ~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 109 (388)
T 1w3b_A 32 NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAA 109 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHH
Confidence 45677788888999999999999999988753 5677899999999999999999999999999875 556778999999
Q ss_pred HHHHCCCHHHHHHHHccCC--CC-ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHH
Q 040365 85 MYAKCARVEDSHRLFCLLP--VK-DAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLG 161 (514)
Q Consensus 85 ~~~~~g~~~~A~~~f~~~~--~~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 161 (514)
.|.+.|++++|.+.|+++. .| +...+..+...+...|++++|++.|+++.+.. +-+..++..+...+...|++++|
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 188 (388)
T 1w3b_A 110 ALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLA 188 (388)
T ss_dssp HHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999998875 34 45678888899999999999999999998863 34578889999999999999999
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 040365 162 KQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMD---LHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDG 238 (514)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 238 (514)
...++++++.. +.+...+..+...|...|++++|...|++.. ..+..+|..+...|.+.|++++|++.|+++.+.
T Consensus 189 ~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~- 266 (388)
T 1w3b_A 189 IHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL- 266 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-
Confidence 99999999876 5667889999999999999999999998764 446789999999999999999999999999985
Q ss_pred CCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCCHHHHH
Q 040365 239 VKP-NSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISNMH-A-GPTENVWL 315 (514)
Q Consensus 239 ~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~-~p~~~~~~ 315 (514)
.| +..++..+..++.+.|++++|...|+.+.+. .+.+...+..+...+.+.|++++|.+.++++. . +.+..+|.
T Consensus 267 -~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 343 (388)
T 1w3b_A 267 -QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHS 343 (388)
T ss_dssp -CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHH
T ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 44 4678999999999999999999999999764 24478899999999999999999999999874 2 34578999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccC
Q 040365 316 TLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARR 360 (514)
Q Consensus 316 ~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 360 (514)
.+..++...|++++|...++++++.+|+++..|..+...+...|+
T Consensus 344 ~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 344 NLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 999999999999999999999999999999999999998877663
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=2.4e-23 Score=210.02 Aligned_cols=305 Identities=11% Similarity=-0.001 Sum_probs=225.3
Q ss_pred hhhHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHCCCHHHHHHHHccCC---CCChhHHHHHHHHH
Q 040365 41 SFTLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSSLINMYAKCARVEDSHRLFCLLP---VKDAISWNSIIAGC 117 (514)
Q Consensus 41 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~d~~~~~~li~~~ 117 (514)
...+..+...+...|++++|..++..+++.. +.+..++..+...|.+.|++++|...|+.+. ..+..+|..+...|
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 104 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 3445555555555566666666666555543 3445555556666666666666666655543 22445566666666
Q ss_pred HHCCChhHHHHHHHHHHHCCCCCCH----HHHHHH------------HHHHhccCChHHHHHHHHHHHHcCCCCcHHHHH
Q 040365 118 VQNGLFDEGLKFFRQMLIAKIKPRH----VSFSSI------------MPACAHLTTLHLGKQLHGCIIRNGFDDNMFIAS 181 (514)
Q Consensus 118 ~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 181 (514)
.+.|++++|++.|+++.+. .|+. ..+..+ ...+...|++++|...+..+++.. +.+..++.
T Consensus 105 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 181 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRE 181 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHH
Confidence 6666666666666666553 2322 233332 334677888888888888888764 56778888
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH-HHHHH--------
Q 040365 182 SLLDMYAKCGNIRLARCIFDKMD---LHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSV-AFVAV-------- 249 (514)
Q Consensus 182 ~li~~y~k~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~l-------- 249 (514)
.+..+|.+.|++++|.+.|+++. ..+..+|..+...|...|++++|+..|+++... .|+.. .+..+
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~ 259 (450)
T 2y4t_A 182 LRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNK 259 (450)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHH
Confidence 89999999999999999998875 457788999999999999999999999999874 45443 33333
Q ss_pred ----HHHHHccCCHHHHHHHHHHhHHhcCCCCC-----HhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHH
Q 040365 250 ----LTACSHAGLIDKAWSYFNSMTKDYGIAPS-----FEHYAAVADLLGRAGKLQEAYEFISNMH--AGPTENVWLTLL 318 (514)
Q Consensus 250 ----l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll 318 (514)
..+|.+.|++++|..+|+.+.+. .|+ ..+|..+..++.+.|++++|.+.++++. .+.+..+|..+.
T Consensus 260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~ 336 (450)
T 2y4t_A 260 LIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRA 336 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 78899999999999999999764 454 4588999999999999999999999863 334789999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 040365 319 SACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNT 354 (514)
Q Consensus 319 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 354 (514)
.+|...|++++|...++++++++|+++..+..+..+
T Consensus 337 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 337 EAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 999999999999999999999999999999888854
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=6.1e-23 Score=210.41 Aligned_cols=362 Identities=12% Similarity=-0.016 Sum_probs=307.2
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 040365 6 LVSWNTVIVGLARNGLYEEALNIVRQMGNVNLKPDSFTLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSSLINM 85 (514)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 85 (514)
+..|......+.+.|++++|+..|+++.... ||..++..+..++...|++++|.+.+..+++.+ +.+..++..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 4567778889999999999999999999865 799999999999999999999999999999986 6677899999999
Q ss_pred HHHCCCHHHHHHHHccCCCC---C--------------------------------------------------------
Q 040365 86 YAKCARVEDSHRLFCLLPVK---D-------------------------------------------------------- 106 (514)
Q Consensus 86 ~~~~g~~~~A~~~f~~~~~~---d-------------------------------------------------------- 106 (514)
|.+.|++++|...|+.+... +
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 99999999999998765311 1
Q ss_pred -----------------------hhHHHHHHHHHHH---CCChhHHHHHHHHHHH-----CCC--------CCCHHHHHH
Q 040365 107 -----------------------AISWNSIIAGCVQ---NGLFDEGLKFFRQMLI-----AKI--------KPRHVSFSS 147 (514)
Q Consensus 107 -----------------------~~~~~~li~~~~~---~g~~~~A~~l~~~m~~-----~g~--------~p~~~t~~~ 147 (514)
...|......+.. .|++++|+.+|+++.+ ..- +.+..++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 2223333333443 8999999999999987 311 223456777
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCh
Q 040365 148 IMPACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMD---LHDIVSWTAVIMGNALHGNA 224 (514)
Q Consensus 148 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~ 224 (514)
+...+...|++++|...+..+++.... ..++..+...|...|++++|...|+++. ..+...|..+...|...|++
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCH
Confidence 888899999999999999999987633 8888999999999999999999999875 34677899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHh
Q 040365 225 HDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISN 304 (514)
Q Consensus 225 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 304 (514)
++|+..|++..... +.+...+..+...+...|++++|..+++.+.+.. +.+...+..+...|.+.|++++|.+.+++
T Consensus 321 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 321 DQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp THHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999998853 2356788889999999999999999999987642 22567888999999999999999999987
Q ss_pred CC----CCCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHh
Q 040365 305 MH----AGPT----ENVWLTLLSACRV---HKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRN 373 (514)
Q Consensus 305 m~----~~p~----~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 373 (514)
+. ..++ ..+|..+...+.. .|++++|...++++++.+|+++.++..++.+|...|++++|...+++..+
T Consensus 398 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 398 AIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 63 2233 4489999999999 99999999999999999999999999999999999999999999999877
Q ss_pred CC
Q 040365 374 KG 375 (514)
Q Consensus 374 ~g 375 (514)
..
T Consensus 478 ~~ 479 (514)
T 2gw1_A 478 LA 479 (514)
T ss_dssp HC
T ss_pred hc
Confidence 53
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=4.6e-21 Score=193.18 Aligned_cols=305 Identities=14% Similarity=0.049 Sum_probs=256.8
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHHCCCHHHHHHHHccCC---CCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCC
Q 040365 63 IHGYAIRHGLDANVCIGSSLINMYAKCARVEDSHRLFCLLP---VKDAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIK 139 (514)
Q Consensus 63 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 139 (514)
.+..++... +.+..++..+...|.+.|++++|..+|+.+. ..+..+|..+...|.+.|++++|+..|+++.+.+ +
T Consensus 14 ~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p 91 (450)
T 2y4t_A 14 GTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-M 91 (450)
T ss_dssp ----------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred ccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-C
Confidence 333444333 5677889999999999999999999999875 3578899999999999999999999999998864 4
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcH---HHHHHH------------HHHHHhcCCHHHHHHHHHhCC
Q 040365 140 PRHVSFSSIMPACAHLTTLHLGKQLHGCIIRNGFDDNM---FIASSL------------LDMYAKCGNIRLARCIFDKMD 204 (514)
Q Consensus 140 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------i~~y~k~g~~~~A~~~~~~m~ 204 (514)
.+...+..+..++...|++++|.+.+..+.+.. +.+. ..+..+ ...|.+.|++++|...|+++.
T Consensus 92 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 170 (450)
T 2y4t_A 92 DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKIL 170 (450)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 467788899999999999999999999998865 3444 555555 444999999999999999875
Q ss_pred ---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CHh
Q 040365 205 ---LHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAP-SFE 280 (514)
Q Consensus 205 ---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~ 280 (514)
..+...|..+...|.+.|++++|+..|+++.+.. +.+..++..+...+...|++++|...|+.+.+. .| +..
T Consensus 171 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~ 246 (450)
T 2y4t_A 171 EVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKR 246 (450)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHH
T ss_pred HhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCChHH
Confidence 4577899999999999999999999999998752 346788999999999999999999999999754 45 344
Q ss_pred HHHHH------------HHHHHhcCCHHHHHHHHHhCC-CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 040365 281 HYAAV------------ADLLGRAGKLQEAYEFISNMH-AGPT-----ENVWLTLLSACRVHKNVELAGKVAEKIFMIDP 342 (514)
Q Consensus 281 ~~~~l------------i~~~~~~g~~~~A~~~~~~m~-~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 342 (514)
.+..+ ...+.+.|++++|.+.|+++. ..|+ ...|..+...+...|++++|...++++++.+|
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p 326 (450)
T 2y4t_A 247 CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP 326 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 44444 788999999999999999873 2344 45788899999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHccChhHHHHHHHHHHhC
Q 040365 343 NNMGAYVILSNTYAAARRWKDAASLRVFMRNK 374 (514)
Q Consensus 343 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 374 (514)
+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 327 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 327 DNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999874
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=6.7e-21 Score=195.17 Aligned_cols=343 Identities=11% Similarity=-0.040 Sum_probs=286.5
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCc--------
Q 040365 4 SDLVSWNTVIVGLARNGLYEEALNIVRQMGNVNLKPDSFTLSSVLPIFADYVDVIKGKEIHGYAIRHGLDAN-------- 75 (514)
Q Consensus 4 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-------- 75 (514)
||..+|..+...|.+.|++++|+..|+++.+.+ +.+..++..+..++...|++++|...+..+.+.+...+
T Consensus 37 p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 115 (514)
T 2gw1_A 37 EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLE 115 (514)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHH
T ss_pred ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHH
Confidence 688899999999999999999999999998864 44567899999999999999999999999987652111
Q ss_pred ----------------------------------------------------------------------hhHHHHHHHH
Q 040365 76 ----------------------------------------------------------------------VCIGSSLINM 85 (514)
Q Consensus 76 ----------------------------------------------------------------------~~~~~~li~~ 85 (514)
...+..+...
T Consensus 116 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (514)
T 2gw1_A 116 RNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLS 195 (514)
T ss_dssp HHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHH
Confidence 2222223333
Q ss_pred HHH---CCCHHHHHHHHccCCC----------------C-ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHH
Q 040365 86 YAK---CARVEDSHRLFCLLPV----------------K-DAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSF 145 (514)
Q Consensus 86 ~~~---~g~~~~A~~~f~~~~~----------------~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 145 (514)
+.. .|++++|...|+++.. | +..+|..+...+...|++++|+..|+++.+.. |+...+
T Consensus 196 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~ 273 (514)
T 2gw1_A 196 NLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSY 273 (514)
T ss_dssp HHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHH
T ss_pred HHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHH
Confidence 333 8999999999987643 1 35678889999999999999999999998864 447888
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCC
Q 040365 146 SSIMPACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMD---LHDIVSWTAVIMGNALHG 222 (514)
Q Consensus 146 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g 222 (514)
..+..++...|++++|...+..+++.. +.+..++..+...|.+.|++++|...|++.. ..+...|..+...|...|
T Consensus 274 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 352 (514)
T 2gw1_A 274 IYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYREN 352 (514)
T ss_dssp HHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcC
Confidence 889999999999999999999998875 5567789999999999999999999999874 446788999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC----HhHHHHHHHHHHh---cCCH
Q 040365 223 NAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPS----FEHYAAVADLLGR---AGKL 295 (514)
Q Consensus 223 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~---~g~~ 295 (514)
++++|+..|+++.+.. +.+..++..+...+...|++++|...++.+.+...-.++ ...+..+...+.+ .|++
T Consensus 353 ~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 431 (514)
T 2gw1_A 353 KFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENF 431 (514)
T ss_dssp CHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHH
T ss_pred CHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCH
Confidence 9999999999998852 335678888999999999999999999998764322232 3488999999999 9999
Q ss_pred HHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 040365 296 QEAYEFISNMH--AGPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVIL 351 (514)
Q Consensus 296 ~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 351 (514)
++|.+.++++. .+.+..+|..+...+...|++++|...++++++++|.++..+..+
T Consensus 432 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 432 IEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 99999998863 234678899999999999999999999999999999987776655
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.89 E-value=3.5e-20 Score=191.06 Aligned_cols=360 Identities=12% Similarity=-0.001 Sum_probs=293.4
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 040365 6 LVSWNTVIVGLARNGLYEEALNIVRQMGNVNLKPDSFTLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSSLINM 85 (514)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 85 (514)
...|..+...+.+.|++++|+..|+++.... +.+..++..+..++...|++++|.+.+..+++.. +.+..++..+...
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 3567888889999999999999999998864 4567889999999999999999999999999986 6678899999999
Q ss_pred HHHCCCHHHHHHHHccCC-CCChh--------------------------------------------------------
Q 040365 86 YAKCARVEDSHRLFCLLP-VKDAI-------------------------------------------------------- 108 (514)
Q Consensus 86 ~~~~g~~~~A~~~f~~~~-~~d~~-------------------------------------------------------- 108 (514)
|.+.|++++|...|+.+. .|+..
T Consensus 103 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSS 182 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHH
Confidence 999999999999886442 11100
Q ss_pred -------------HHHHHHHHHH--------HCCChhHHHHHHHHHHHCCCCCC--------HHHHHHHHHHHhccCChH
Q 040365 109 -------------SWNSIIAGCV--------QNGLFDEGLKFFRQMLIAKIKPR--------HVSFSSIMPACAHLTTLH 159 (514)
Q Consensus 109 -------------~~~~li~~~~--------~~g~~~~A~~l~~~m~~~g~~p~--------~~t~~~ll~~~~~~~~~~ 159 (514)
.+..+...+. ..|++++|+.+|+++.+. .|+ ..++..+...+...|+++
T Consensus 183 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~ 260 (537)
T 3fp2_A 183 VNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNNLL 260 (537)
T ss_dssp SCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcccHH
Confidence 1111111111 124788999999998875 344 234666667788899999
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 040365 160 LGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMD---LHDIVSWTAVIMGNALHGNAHDAISLFEQMEK 236 (514)
Q Consensus 160 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 236 (514)
+|...+..+++.. |+...+..+...|.+.|++++|.+.|+++. ..+..+|..+...|...|++++|+..|++...
T Consensus 261 ~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 338 (537)
T 3fp2_A 261 DAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS 338 (537)
T ss_dssp HHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 9999999999875 457888899999999999999999999875 45678899999999999999999999999988
Q ss_pred cCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhCC----CC---
Q 040365 237 DGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAP-SFEHYAAVADLLGRAGKLQEAYEFISNMH----AG--- 308 (514)
Q Consensus 237 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~--- 308 (514)
.. +.+...+..+...+...|++++|..+++.+.+. .| +...+..+...+.+.|++++|.+.++++. ..
T Consensus 339 ~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 414 (537)
T 3fp2_A 339 LN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK---FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI 414 (537)
T ss_dssp HC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSC
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhh
Confidence 53 224578888999999999999999999999765 34 57788999999999999999999998862 11
Q ss_pred -CCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHhCC
Q 040365 309 -PTENVWLTLLSACRVH----------KNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRNKG 375 (514)
Q Consensus 309 -p~~~~~~~ll~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 375 (514)
.....+..+...+... |++++|...++++++.+|+++.++..++.+|...|++++|.+.+++..+..
T Consensus 415 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 415 HVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp SSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 1223345556677777 999999999999999999999999999999999999999999999987754
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=8.8e-19 Score=170.31 Aligned_cols=326 Identities=10% Similarity=-0.016 Sum_probs=212.6
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 040365 5 DLVSWNTVIVGLARNGLYEEALNIVRQMGNVNLKPDSFTLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSSLIN 84 (514)
Q Consensus 5 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 84 (514)
|+..|..+...+.+.|++++|+..|+++.... +.+..++..+...+...|++++|...+..+++.. +.+..++..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 34566777777777788888888877776643 3345566666777777777777777777777664 445566666666
Q ss_pred HHHHCCCHHHHHHHHccCCCC------ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh
Q 040365 85 MYAKCARVEDSHRLFCLLPVK------DAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTL 158 (514)
Q Consensus 85 ~~~~~g~~~~A~~~f~~~~~~------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 158 (514)
.|.+.|++++|...|+..... +...+..+...+. ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 666666666666666655322 1222222211000 00111223455566666
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHH
Q 040365 159 HLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMD---LHDIVSWTAVIMGNALHGNAHDAISLFEQME 235 (514)
Q Consensus 159 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~ 235 (514)
++|.+.+..+.+.. +.+..++..+...|.+.|++++|...|++.. ..+..+|..+...|...|++++|...|++..
T Consensus 137 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666666666554 4455666667777777777777777776653 3355677777777777777777777777776
Q ss_pred HcCCCCCH-HHHH------------HHHHHHHccCCHHHHHHHHHHhHHhcCCCCCH--hHHHHHHHHHHhcCCHHHHHH
Q 040365 236 KDGVKPNS-VAFV------------AVLTACSHAGLIDKAWSYFNSMTKDYGIAPSF--EHYAAVADLLGRAGKLQEAYE 300 (514)
Q Consensus 236 ~~g~~p~~-~t~~------------~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~ 300 (514)
+. .|+. ..+. .+...+...|++++|...++.+.+...-.|.. ..+..+...+...|++++|.+
T Consensus 216 ~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 216 KL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp HH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 64 2332 2221 23556778888888888888886542111111 335567788888899999988
Q ss_pred HHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHc
Q 040365 301 FISNMH--AGPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAA 358 (514)
Q Consensus 301 ~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 358 (514)
.+++.. .+.+..+|..+...+...|++++|...++++++++|++...+..+..++...
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 294 ICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 888763 2346788888889999999999999999999999998888877777766543
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.85 E-value=6.4e-18 Score=164.17 Aligned_cols=304 Identities=13% Similarity=0.049 Sum_probs=224.4
Q ss_pred hhhHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHCCCHHHHHHHHccCC---CCChhHHHHHHHHH
Q 040365 41 SFTLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSSLINMYAKCARVEDSHRLFCLLP---VKDAISWNSIIAGC 117 (514)
Q Consensus 41 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~d~~~~~~li~~~ 117 (514)
...+..+...+...|++++|...+..+++.. +.+..++..+...|...|++++|...|+... ..+...|..+...+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 3445556666667777777777777776654 4455666666666777777777776666543 22455666666666
Q ss_pred HHCCChhHHHHHHHHHHHCCCCC---CH-HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCH
Q 040365 118 VQNGLFDEGLKFFRQMLIAKIKP---RH-VSFSSIMPACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNI 193 (514)
Q Consensus 118 ~~~g~~~~A~~l~~~m~~~g~~p---~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~ 193 (514)
.+.|++++|+..|++..+. .| +. ..+..+... .. ...+..+...|...|++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~-------~~----------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKA-------DE----------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHH-------HH----------------HHHHHHHHHHHHHTTCH
T ss_pred HHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHH-------HH----------------HHHHHHHHHHHHHccCH
Confidence 6677777777776666553 33 11 111111110 00 11223346789999999
Q ss_pred HHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhH
Q 040365 194 RLARCIFDKMD---LHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMT 270 (514)
Q Consensus 194 ~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 270 (514)
++|.+.|+++. +.+...|..+...+...|++++|+..|++..... +.+..++..+...+...|++++|...|+...
T Consensus 137 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999875 4577889999999999999999999999998853 3466788899999999999999999999987
Q ss_pred HhcCCCCC-HhHHH------------HHHHHHHhcCCHHHHHHHHHhCC-CCCC-H----HHHHHHHHHHHhcCCHHHHH
Q 040365 271 KDYGIAPS-FEHYA------------AVADLLGRAGKLQEAYEFISNMH-AGPT-E----NVWLTLLSACRVHKNVELAG 331 (514)
Q Consensus 271 ~~~~~~p~-~~~~~------------~li~~~~~~g~~~~A~~~~~~m~-~~p~-~----~~~~~ll~~~~~~~~~~~a~ 331 (514)
+. .|+ ...+. .+...+.+.|++++|.+.++++. ..|+ . ..+..+...+...|++++|.
T Consensus 216 ~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 216 KL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hh---CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 64 342 33322 23667899999999999998863 2333 3 23556788999999999999
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHhC
Q 040365 332 KVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRNK 374 (514)
Q Consensus 332 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 374 (514)
..++++++.+|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999865
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.83 E-value=2.7e-18 Score=165.02 Aligned_cols=286 Identities=10% Similarity=-0.036 Sum_probs=187.4
Q ss_pred CCchhHHHHHHHHHHHCCCHHHHHHHHccCC---CCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040365 73 DANVCIGSSLINMYAKCARVEDSHRLFCLLP---VKDAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIM 149 (514)
Q Consensus 73 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 149 (514)
+.+..++..+...+...|++++|.++|+++. ..+...+..++..+.+.|++++|+.+++++.+.. +.+...+..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 3444555555556666666666666665543 2233445555566666666666666666665542 23445555556
Q ss_pred HHHhccC-ChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChH
Q 040365 150 PACAHLT-TLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMD---LHDIVSWTAVIMGNALHGNAH 225 (514)
Q Consensus 150 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~ 225 (514)
..+...| ++++|.+.+..+++.. +.+...+..+...|...|++++|.+.|++.. ..+..+|..+...|...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 6666666 6666666666666543 3345556666677777777777777776654 234456666777777777777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcC-------CCCCHhHHHHHHHHHHhcCCHHHH
Q 040365 226 DAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYG-------IAPSFEHYAAVADLLGRAGKLQEA 298 (514)
Q Consensus 226 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-------~~p~~~~~~~li~~~~~~g~~~~A 298 (514)
+|+..|++..+.. +.+...+..+...+...|++++|..+++...+... .......+..+...|.+.|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 7777777776642 23456677777777777788877777777655321 122456777888888888888888
Q ss_pred HHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH-HHccCh
Q 040365 299 YEFISNMH--AGPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTY-AAARRW 361 (514)
Q Consensus 299 ~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~ 361 (514)
.+.+++.. .+.+..+|..+...+...|++++|...++++++++|+++..+..+..++ ...|+.
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 88887753 2345677888888888888888888888888888888888888888877 344443
No 15
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.83 E-value=3.5e-18 Score=176.11 Aligned_cols=340 Identities=10% Similarity=0.029 Sum_probs=269.6
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHhCCC----------
Q 040365 4 SDLVSWNTVIVGLARNGLYEEALNIVRQMGNVNLKPDSFTLSSVLPIFADYVDVIKGKEIHGYAIRHGLD---------- 73 (514)
Q Consensus 4 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~---------- 73 (514)
.++.+|..+...|.+.|++++|+..|+++...+ +.+..++..+..++...|++++|...+..+ .....
T Consensus 57 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~ 134 (537)
T 3fp2_A 57 NEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFDLSVL-SLNGDFDGASIEPML 134 (537)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-C-----------CHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHH
Confidence 477899999999999999999999999998864 445678888999999999999999988633 21100
Q ss_pred ---------------------------Cchh------------------------------HHHHHHHHHHHC-------
Q 040365 74 ---------------------------ANVC------------------------------IGSSLINMYAKC------- 89 (514)
Q Consensus 74 ---------------------------~~~~------------------------------~~~~li~~~~~~------- 89 (514)
|+.. ....+...+...
T Consensus 135 ~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a 214 (537)
T 3fp2_A 135 ERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVA 214 (537)
T ss_dssp HHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHH
Confidence 0000 222222222222
Q ss_pred -CCHHHHHHHHccCCC--CC--------hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh
Q 040365 90 -ARVEDSHRLFCLLPV--KD--------AISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTL 158 (514)
Q Consensus 90 -g~~~~A~~~f~~~~~--~d--------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 158 (514)
|++++|..+|+.+.+ |+ ..+|..+...+...|++++|+..|++..+. .|+...+..+...+...|++
T Consensus 215 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 292 (537)
T 3fp2_A 215 NDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENS 292 (537)
T ss_dssp HHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCC
T ss_pred HHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCH
Confidence 478889999888754 22 235777778899999999999999999885 56688888899999999999
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHH
Q 040365 159 HLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMD---LHDIVSWTAVIMGNALHGNAHDAISLFEQME 235 (514)
Q Consensus 159 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~ 235 (514)
+.|...+..+++.. +.+..++..+...|.+.|++++|.+.|++.. ..+...|..+...|...|++++|+..|+++.
T Consensus 293 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 371 (537)
T 3fp2_A 293 QEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETK 371 (537)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999876 5678889999999999999999999999875 4467889999999999999999999999998
Q ss_pred HcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC----CHhHHHHHHHHHHhc----------CCHHHHHHH
Q 040365 236 KDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAP----SFEHYAAVADLLGRA----------GKLQEAYEF 301 (514)
Q Consensus 236 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~----------g~~~~A~~~ 301 (514)
+.. +.+...+..+...+...|++++|...|+.+.+...-.+ ....+..+...+.+. |++++|...
T Consensus 372 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~ 450 (537)
T 3fp2_A 372 LKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKL 450 (537)
T ss_dssp HHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHH
T ss_pred HhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHH
Confidence 863 33467888899999999999999999999865421111 122344556677777 999999999
Q ss_pred HHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHH
Q 040365 302 ISNMH--AGPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYV 349 (514)
Q Consensus 302 ~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 349 (514)
+++.. .+.+..+|..+...+...|++++|...+++++++.|.+.....
T Consensus 451 ~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 451 LTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 99863 3356788999999999999999999999999999998765543
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.81 E-value=2.1e-17 Score=158.72 Aligned_cols=264 Identities=13% Similarity=0.037 Sum_probs=228.9
Q ss_pred CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 040365 105 KDAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLL 184 (514)
Q Consensus 105 ~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 184 (514)
.+...+..+...+...|++++|+++|+++.+.. +.+...+..++.++...|++++|..++..+++.. +.+..++..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 456677888899999999999999999998764 3455566677788899999999999999999875 55678888999
Q ss_pred HHHHhcC-CHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 040365 185 DMYAKCG-NIRLARCIFDKMD---LHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLID 260 (514)
Q Consensus 185 ~~y~k~g-~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 260 (514)
..|...| ++++|.+.|++.. ..+...|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 9999999999875 3467789999999999999999999999998863 224567777889999999999
Q ss_pred HHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhCCC-----------CCCHHHHHHHHHHHHhcCCHH
Q 040365 261 KAWSYFNSMTKDYGIAP-SFEHYAAVADLLGRAGKLQEAYEFISNMHA-----------GPTENVWLTLLSACRVHKNVE 328 (514)
Q Consensus 261 ~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----------~p~~~~~~~ll~~~~~~~~~~ 328 (514)
+|...++...+ ..| +...+..+...+.+.|++++|.+.+++... +.+..+|..+...+...|+++
T Consensus 177 ~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 177 LAERFFSQALS---IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHT---TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHH---hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 99999999864 345 678899999999999999999999987631 334678999999999999999
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHhC
Q 040365 329 LAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRNK 374 (514)
Q Consensus 329 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 374 (514)
+|...++++++..|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 254 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999999976543
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.80 E-value=1.6e-17 Score=162.36 Aligned_cols=278 Identities=10% Similarity=-0.039 Sum_probs=217.7
Q ss_pred HHCCCHHHHHH-HHccCCC-----C--ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh
Q 040365 87 AKCARVEDSHR-LFCLLPV-----K--DAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTL 158 (514)
Q Consensus 87 ~~~g~~~~A~~-~f~~~~~-----~--d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 158 (514)
.-.|++++|.. .|++... | +...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 33477777877 7664431 1 34567788888888999999999998888763 45667778888888888999
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCC--C-ChhHHHH---------------HHHHHHh
Q 040365 159 HLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMDL--H-DIVSWTA---------------VIMGNAL 220 (514)
Q Consensus 159 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~--~-d~~~~~~---------------li~~~~~ 220 (514)
++|...+..+++.. +.+..++..+...|.+.|++++|.+.|+++.. | +...+.. .+..+..
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 99999998888875 55777888888889999999999988887642 2 2222221 2333448
Q ss_pred CCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHhcCCHHHH
Q 040365 221 HGNAHDAISLFEQMEKDGVK-PNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAP-SFEHYAAVADLLGRAGKLQEA 298 (514)
Q Consensus 221 ~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A 298 (514)
.|++++|+..|+++...... ++..++..+...+...|++++|...|+.+.+. .| +...+..+...+.+.|++++|
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHcCCHHHH
Confidence 89999999999999885322 14788999999999999999999999998754 44 578899999999999999999
Q ss_pred HHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----------cchHHHHHHHHHHccChhHHH
Q 040365 299 YEFISNMH--AGPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNN-----------MGAYVILSNTYAAARRWKDAA 365 (514)
Q Consensus 299 ~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~a~ 365 (514)
.+.++++. .+.+..+|..+..++...|++++|...+++++++.|++ ..+|..++.+|...|++++|.
T Consensus 271 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 271 VAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 99999863 23567899999999999999999999999999988877 789999999999999999999
Q ss_pred HHHH
Q 040365 366 SLRV 369 (514)
Q Consensus 366 ~~~~ 369 (514)
.+++
T Consensus 351 ~~~~ 354 (368)
T 1fch_A 351 AADA 354 (368)
T ss_dssp HHHT
T ss_pred HhHH
Confidence 9876
No 18
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=1.6e-17 Score=161.17 Aligned_cols=268 Identities=12% Similarity=0.101 Sum_probs=123.7
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 040365 7 VSWNTVIVGLARNGLYEEALNIVRQMGNVNLKPDSFTLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSSLINMY 86 (514)
Q Consensus 7 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 86 (514)
.+|+.|..++.+.|++++|++.|.+ .+|..+|..++.++...|++++|...+..+++. .+++.+.+.|+.+|
T Consensus 33 ~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y 104 (449)
T 1b89_A 33 AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFAL 104 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHH
Confidence 4888888888888888888888865 257778888888888888888888877777664 45577788888888
Q ss_pred HHCCCHHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 040365 87 AKCARVEDSHRLFCLLPVKDAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLGKQLHG 166 (514)
Q Consensus 87 ~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 166 (514)
.++|+++++.++|+. |+..+|+.+...|...|++++|..+|..+ ..|..+..++.+.|++++|.+.+.
T Consensus 105 ~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~ 172 (449)
T 1b89_A 105 AKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGAR 172 (449)
T ss_dssp ----CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHH
Confidence 888888888887763 66778888888888888888888888876 367888888888888888888887
Q ss_pred HHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHH
Q 040365 167 CIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMDLHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAF 246 (514)
Q Consensus 167 ~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 246 (514)
.+ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|++++|+.+++...... +-....|
T Consensus 173 KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~f 244 (449)
T 1b89_A 173 KA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMF 244 (449)
T ss_dssp HH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHH
T ss_pred Hc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHH
Confidence 77 367788888888888888888877766654 333334467788888888888888888876532 2223344
Q ss_pred HHHHHHHH--ccCCHHHHHHHHHHhHHhcCCCC------CHhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 040365 247 VAVLTACS--HAGLIDKAWSYFNSMTKDYGIAP------SFEHYAAVADLLGRAGKLQEAYEFISNM 305 (514)
Q Consensus 247 ~~ll~a~~--~~g~~~~a~~~~~~m~~~~~~~p------~~~~~~~li~~~~~~g~~~~A~~~~~~m 305 (514)
+.+.-+++ +.+++.+.++.|. ++-+++| +..+|.-++-.|..-++++.|...+-+-
T Consensus 245 tel~il~~ky~p~k~~ehl~~~~---~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 245 TELAILYSKFKPQKMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHhcCHHHHHHHHHHHH---HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence 44443443 4455555555554 3234444 4567888888888888888887765544
No 19
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.78 E-value=5.8e-15 Score=150.51 Aligned_cols=351 Identities=13% Similarity=0.035 Sum_probs=294.0
Q ss_pred CcchHHHHHHHHHh----cCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHhC----CCChHHHHHHHHHHHHhCCCCch
Q 040365 5 DLVSWNTVIVGLAR----NGLYEEALNIVRQMGNVNLKPDSFTLSSVLPIFAD----YVDVIKGKEIHGYAIRHGLDANV 76 (514)
Q Consensus 5 ~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~ 76 (514)
|+.++..+-..|.. .+++++|+..|++..+.| +...+..+...+.. .++.++|.+.+....+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 55667777777887 899999999999998865 55677777777877 899999999999999876 56
Q ss_pred hHHHHHHHHHHH----CCCHHHHHHHHccCCC-CChhHHHHHHHHHHH----CCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 040365 77 CIGSSLINMYAK----CARVEDSHRLFCLLPV-KDAISWNSIIAGCVQ----NGLFDEGLKFFRQMLIAKIKPRHVSFSS 147 (514)
Q Consensus 77 ~~~~~li~~~~~----~g~~~~A~~~f~~~~~-~d~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 147 (514)
..+..|..+|.. .++.++|.+.|+...+ .+..++..|...|.. .+++++|++.|++..+.| +...+..
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~ 188 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQ 188 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 777888899998 8899999999988654 467788888888887 789999999999998875 5667777
Q ss_pred HHHHHhc----cCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHhCC-CCChhHHHHHHHHH
Q 040365 148 IMPACAH----LTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAK----CGNIRLARCIFDKMD-LHDIVSWTAVIMGN 218 (514)
Q Consensus 148 ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k----~g~~~~A~~~~~~m~-~~d~~~~~~li~~~ 218 (514)
+...+.. .++.++|.+.+....+.| +...+..|..+|.. .+++++|.+.|++.. ..+..++..+...|
T Consensus 189 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y 265 (490)
T 2xm6_A 189 LGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYIL 265 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 7777776 789999999999999876 45677788888886 899999999999875 45667788888888
Q ss_pred Hh----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc-----CCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHH
Q 040365 219 AL----HGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHA-----GLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLL 289 (514)
Q Consensus 219 ~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 289 (514)
.. .++.++|+.+|++..+.| +...+..+...+... ++.++|...|+...+. .+...+..|..+|
T Consensus 266 ~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y 338 (490)
T 2xm6_A 266 EQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQANLGAIY 338 (490)
T ss_dssp HHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHH
T ss_pred HCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHHHHH
Confidence 87 899999999999998764 445666677777776 8999999999988653 2456777888888
Q ss_pred HhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH----c
Q 040365 290 GRAG---KLQEAYEFISNMHAGPTENVWLTLLSACRV----HKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAA----A 358 (514)
Q Consensus 290 ~~~g---~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~ 358 (514)
.+.| ++++|.+.|++.....+...+..|...+.. .+++++|...++++.+.+ ++..+..|..+|.. .
T Consensus 339 ~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~ 416 (490)
T 2xm6_A 339 FRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVE 416 (490)
T ss_dssp HHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSC
T ss_pred HhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCC
Confidence 7766 789999999987655788899999999988 899999999999998865 56789999999998 8
Q ss_pred cChhHHHHHHHHHHhCCC
Q 040365 359 RRWKDAASLRVFMRNKGM 376 (514)
Q Consensus 359 g~~~~a~~~~~~m~~~g~ 376 (514)
+++++|...+++..+.+.
T Consensus 417 ~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 417 RDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp CCHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHCCC
Confidence 999999999999988764
No 20
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.78 E-value=2.5e-17 Score=161.07 Aligned_cols=276 Identities=9% Similarity=-0.029 Sum_probs=215.4
Q ss_pred CCHHHHHHHHccCC---CCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 040365 90 ARVEDSHRLFCLLP---VKDAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLGKQLHG 166 (514)
Q Consensus 90 g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 166 (514)
+....+...+...+ ..+...|..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...+.
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 123 (365)
T 4eqf_A 45 VTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQ 123 (365)
T ss_dssp --------CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhhHHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 33344444444333 2355668888999999999999999999998763 4567788888999999999999999999
Q ss_pred HHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCC--C-C----------hhHHHHHHHHHHhCCChHHHHHHHHH
Q 040365 167 CIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMDL--H-D----------IVSWTAVIMGNALHGNAHDAISLFEQ 233 (514)
Q Consensus 167 ~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~--~-d----------~~~~~~li~~~~~~g~~~~A~~l~~~ 233 (514)
++++.. +.+..++..+...|.+.|++++|.+.|+++.. | + ...+..+...+...|++++|+.+|++
T Consensus 124 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 202 (365)
T 4eqf_A 124 RCLELQ-PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLE 202 (365)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHH
T ss_pred HHHhcC-CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 998875 55688889999999999999999999988752 2 1 22334457889999999999999999
Q ss_pred HHHcCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhCC-C-CC
Q 040365 234 MEKDGVK-PNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAP-SFEHYAAVADLLGRAGKLQEAYEFISNMH-A-GP 309 (514)
Q Consensus 234 m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~-~p 309 (514)
+.+.... ++..++..+...+...|++++|...|+.+.+. .| +...|..+..+|.+.|++++|.+.++++. . +.
T Consensus 203 al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 279 (365)
T 4eqf_A 203 AAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV---RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG 279 (365)
T ss_dssp HHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 9986322 25788999999999999999999999998764 34 68899999999999999999999999863 2 34
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------------CcchHHHHHHHHHHccChhHHHHHHHH
Q 040365 310 TENVWLTLLSACRVHKNVELAGKVAEKIFMIDPN------------NMGAYVILSNTYAAARRWKDAASLRVF 370 (514)
Q Consensus 310 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 370 (514)
+..+|..+..++...|++++|...+++++++.|. +...|..|..++...|+.+.+.++.+.
T Consensus 280 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 280 FIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 5889999999999999999999999999998765 367889999999999999998887653
No 21
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=5.2e-19 Score=171.60 Aligned_cols=250 Identities=11% Similarity=0.071 Sum_probs=99.9
Q ss_pred HCCCHHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 040365 88 KCARVEDSHRLFCLLPVKDAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLGKQLHGC 167 (514)
Q Consensus 88 ~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 167 (514)
+.|++++|.+.++++..|+ +|..|+.++.+.|++++|++.|.+ .+|..+|..++.++...|++++|..++..
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 5677888888888875553 788888888888888888888754 25666778888888888888888887776
Q ss_pred HHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHH
Q 040365 168 IIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMDLHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFV 247 (514)
Q Consensus 168 ~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 247 (514)
..+. .+++.+.+.|+.+|.|+|+++++.++++ .|+..+|+.+...|...|++++|..+|..+ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT---------TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence 6663 4456777778888888888888777765 356668888888888888888888888865 2577
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 040365 248 AVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISNMHAGPTENVWLTLLSACRVHKNV 327 (514)
Q Consensus 248 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~ 327 (514)
.+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+...|+. ...++..|.+.|.+
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~--l~~lv~~Yek~G~~ 223 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE--LEELINYYQDRGYF 223 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHH--HHHHHHHHHHTTCH
T ss_pred HHHHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhh--HHHHHHHHHHCCCH
Confidence 7888888888888888887765 25677888888888888888886655554433433 34577778888888
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHc--cChhHHHHHH
Q 040365 328 ELAGKVAEKIFMIDPNNMGAYVILSNTYAAA--RRWKDAASLR 368 (514)
Q Consensus 328 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~a~~~~ 368 (514)
++|..+++..+.+++...+.|.-|..+|++- ++..+..+.|
T Consensus 224 eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~ 266 (449)
T 1b89_A 224 EELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELF 266 (449)
T ss_dssp HHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 8888888888888877777777777777654 3444444444
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.76 E-value=9.5e-17 Score=156.89 Aligned_cols=269 Identities=11% Similarity=-0.027 Sum_probs=146.3
Q ss_pred hHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHCCCHHHHHHHHccCC---CCChhHHHHHHHHHHH
Q 040365 43 TLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSSLINMYAKCARVEDSHRLFCLLP---VKDAISWNSIIAGCVQ 119 (514)
Q Consensus 43 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~ 119 (514)
.+..+...+...|++++|...+..+++.. +.+..++..+...|.+.|++++|...|+... ..+..+|..+...|..
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 144 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTN 144 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 34445555555555555555555555543 3444555555555555555555555555432 2244455555555555
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 040365 120 NGLFDEGLKFFRQMLIAKIKPRHV-SFSSIMPACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARC 198 (514)
Q Consensus 120 ~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~ 198 (514)
.|++++|+..|+++.... |+.. .+..+.. ... ...+ ...+..+...+ +.|++++|..
T Consensus 145 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~-------~~~-----------~~~~-~~~~~~~~~~~-~~~~~~~A~~ 202 (368)
T 1fch_A 145 ESLQRQACEILRDWLRYT--PAYAHLVTPAEE-------GAG-----------GAGL-GPSKRILGSLL-SDSLFLEVKE 202 (368)
T ss_dssp TTCHHHHHHHHHHHHHTS--TTTGGGCC----------------------------------CTTHHHH-HHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC--cCcHHHHHHHHH-------Hhh-----------hhcc-cHHHHHHHHHh-hcccHHHHHH
Confidence 555555555555555432 2111 1100000 000 0000 00000122222 6666666666
Q ss_pred HHHhCC--CC---ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhc
Q 040365 199 IFDKMD--LH---DIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDY 273 (514)
Q Consensus 199 ~~~~m~--~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 273 (514)
.|+++. .| +..+|..+...|...|++++|+..|+++.... +.+..++..+...+...|++++|...|+.+.+.
T Consensus 203 ~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~- 280 (368)
T 1fch_A 203 LFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL- 280 (368)
T ss_dssp HHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 666653 22 35566666667777777777777777766542 223456666667777777777777777766543
Q ss_pred CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040365 274 GIAP-SFEHYAAVADLLGRAGKLQEAYEFISNMH-AGP------------TENVWLTLLSACRVHKNVELAGKVAEKIF 338 (514)
Q Consensus 274 ~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 338 (514)
.| +...+..+..+|.+.|++++|.+.++++. ..| ...+|..+..++...|+.++|..++++.+
T Consensus 281 --~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 281 --QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp --CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred --CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 33 45666677777777777777777766542 011 15677777777777888777777766543
No 23
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.76 E-value=2.1e-15 Score=142.46 Aligned_cols=269 Identities=7% Similarity=-0.044 Sum_probs=210.3
Q ss_pred HHHCCCHHHHHHHHccCCCCCh----hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHH
Q 040365 86 YAKCARVEDSHRLFCLLPVKDA----ISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLG 161 (514)
Q Consensus 86 ~~~~g~~~~A~~~f~~~~~~d~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 161 (514)
....|++..|...++.....++ ...-.+..+|...|++++|+..++. . -+|+..++..+...+...++.+.|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHHH
Confidence 4457888888888877654332 2445577888888888888876654 2 356777788888888888888999
Q ss_pred HHHHHHHHHcCC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 040365 162 KQLHGCIIRNGF-DDNMFIASSLLDMYAKCGNIRLARCIFDKMDLHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVK 240 (514)
Q Consensus 162 ~~~~~~~~~~~~-~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 240 (514)
.+.++.++..+. +.+..++..+...|.+.|++++|.+.|++ ..+...+..++..|.+.|++++|.+.|+++.+. .
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 160 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--D 160 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--C
Confidence 998888887764 44566777788999999999999999998 567889999999999999999999999999986 4
Q ss_pred CCHHHH---HHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCCHHHHH
Q 040365 241 PNSVAF---VAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISNMH-A-GPTENVWL 315 (514)
Q Consensus 241 p~~~t~---~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~-~p~~~~~~ 315 (514)
|+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.+++.. . +.+..+|.
T Consensus 161 p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~ 238 (291)
T 3mkr_A 161 EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLI 238 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 664321 22334445669999999999999875 24478899999999999999999999999863 2 34788899
Q ss_pred HHHHHHHhcCCHHH-HHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHH
Q 040365 316 TLLSACRVHKNVEL-AGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLR 368 (514)
Q Consensus 316 ~ll~~~~~~~~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 368 (514)
.++..+...|+.++ +.++++++.+++|+++.+ .+...+.+.++++..-|
T Consensus 239 ~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~----~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 239 NLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI----KEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHHHHc
Confidence 99999999999875 678999999999998744 34455666666655433
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.75 E-value=8.8e-17 Score=157.21 Aligned_cols=261 Identities=11% Similarity=-0.053 Sum_probs=201.3
Q ss_pred ChhhHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHCCCHHHHHHHHccCC---CCChhHHHHHHHH
Q 040365 40 DSFTLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSSLINMYAKCARVEDSHRLFCLLP---VKDAISWNSIIAG 116 (514)
Q Consensus 40 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~d~~~~~~li~~ 116 (514)
+...+..+...+...|++++|...++.+++.. +.+..++..+...|.+.|++++|...|++.. ..+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 44557777778888888888888888888875 5677788888888888888888888888764 3457788888888
Q ss_pred HHHCCChhHHHHHHHHHHHCCCCCC-----------HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCC-CcHHHHHHHH
Q 040365 117 CVQNGLFDEGLKFFRQMLIAKIKPR-----------HVSFSSIMPACAHLTTLHLGKQLHGCIIRNGFD-DNMFIASSLL 184 (514)
Q Consensus 117 ~~~~g~~~~A~~l~~~m~~~g~~p~-----------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li 184 (514)
|.+.|++++|+..|+++.+.. |+ ...+..+...+...|++++|.+.+..+++.... .+..++..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 889999999999988887642 32 122334567888899999999999999887522 1678888899
Q ss_pred HHHHhcCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHH
Q 040365 185 DMYAKCGNIRLARCIFDKMD---LHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKP-NSVAFVAVLTACSHAGLID 260 (514)
Q Consensus 185 ~~y~k~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~ 260 (514)
..|.+.|++++|.+.|++.. ..+..+|+.+...|...|++++|+..|+++.+. .| +..++..+..++...|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCHH
Confidence 99999999999999998865 456788999999999999999999999998885 34 4678888999999999999
Q ss_pred HHHHHHHHhHHhcCCC----------CCHhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 040365 261 KAWSYFNSMTKDYGIA----------PSFEHYAAVADLLGRAGKLQEAYEFISNM 305 (514)
Q Consensus 261 ~a~~~~~~m~~~~~~~----------p~~~~~~~li~~~~~~g~~~~A~~~~~~m 305 (514)
+|...|+.+.+...-. .+...|..+...+...|+.+.+.+..++-
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 9999999886542110 13678899999999999999999888764
No 25
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.75 E-value=2.2e-15 Score=152.59 Aligned_cols=364 Identities=10% Similarity=-0.043 Sum_probs=243.1
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHhhC-----C--CCC-ChhhHHHHHHHHhCCCChHHHHHHHHHHHHhC------
Q 040365 6 LVSWNTVIVGLARNGLYEEALNIVRQMGNV-----N--LKP-DSFTLSSVLPIFADYVDVIKGKEIHGYAIRHG------ 71 (514)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g--~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g------ 71 (514)
+..||.|...+...|++++|++.|++..+. + ..| ...+|..+..++...|++++|...++.+++..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 457899999999999999999999887541 1 123 34678899999999999999999999887641
Q ss_pred C-CCchhHHHHHHHHHHHC--CCHHHHHHHHccCC--CC-ChhHHHHHHHH---HHHCCChhHHHHHHHHHHHCCCCCCH
Q 040365 72 L-DANVCIGSSLINMYAKC--ARVEDSHRLFCLLP--VK-DAISWNSIIAG---CVQNGLFDEGLKFFRQMLIAKIKPRH 142 (514)
Q Consensus 72 ~-~~~~~~~~~li~~~~~~--g~~~~A~~~f~~~~--~~-d~~~~~~li~~---~~~~g~~~~A~~l~~~m~~~g~~p~~ 142 (514)
. .....++..+..++.+. +++++|...|++.. .| +...+..+... +...++.++|++.|++..+.. +.+.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~ 209 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQ 209 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccch
Confidence 1 12234565555555554 46899999998764 23 55556555544 345678899999999887753 3345
Q ss_pred HHHHHHHHHHhc----cCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCC---CCChhHHHHHH
Q 040365 143 VSFSSIMPACAH----LTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMD---LHDIVSWTAVI 215 (514)
Q Consensus 143 ~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~d~~~~~~li 215 (514)
..+..+...+.. .++.++|.+.++...+.. +.+..++..+...|.+.|++++|...|++.. +.+..+|..+.
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 288 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIG 288 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 555555544443 467889999999988875 6677888899999999999999999998875 33556676666
Q ss_pred HHHHhC-------------------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCC
Q 040365 216 MGNALH-------------------GNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIA 276 (514)
Q Consensus 216 ~~~~~~-------------------g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 276 (514)
..|... +..++|...|++..+.. +.+..++..+...+...|++++|...|+...+. .
T Consensus 289 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~---~ 364 (472)
T 4g1t_A 289 CCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK---E 364 (472)
T ss_dssp HHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS---C
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc---C
Confidence 555322 23567888888877642 223456778888999999999999999988653 3
Q ss_pred CCHh----HHHHHHH-HHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHH
Q 040365 277 PSFE----HYAAVAD-LLGRAGKLQEAYEFISNM-HAGPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVI 350 (514)
Q Consensus 277 p~~~----~~~~li~-~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 350 (514)
|+.. .+..+.. .+...|+.++|++.+++. ...|+...+.. ....+..++++.++.+|+++.+|..
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~---------~~~~l~~~~~~~l~~~p~~~~~~~~ 435 (472)
T 4g1t_A 365 LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK---------MKDKLQKIAKMRLSKNGADSEALHV 435 (472)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH---------HHHHHHHHHHHHHHHCC-CTTHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH---------HHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 3322 2233332 235678999999998875 34565443332 2345567788888899999999999
Q ss_pred HHHHHHHccChhHHHHHHHHHHhCCCccCCcccE
Q 040365 351 LSNTYAAARRWKDAASLRVFMRNKGMKKTPACSW 384 (514)
Q Consensus 351 l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~ 384 (514)
|+.+|...|++++|.+.+++..+.|-..+...+|
T Consensus 436 LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 436 LAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHHHHHHHCC----------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 9999999999999999999988776443334455
No 26
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.75 E-value=8e-15 Score=151.01 Aligned_cols=362 Identities=9% Similarity=0.024 Sum_probs=215.5
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 040365 5 DLVSWNTVIVGLARNGLYEEALNIVRQMGNVNLKPDSFTLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSSLIN 84 (514)
Q Consensus 5 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 84 (514)
|+.+|..++. +.+.|++++|..+|+++.... +-+...|...+..+.+.|+++.|..+|+.+++.. |+...|..++.
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence 6778999998 578999999999999998752 4456678889999999999999999999998764 57777777775
Q ss_pred -HHHHCCCHHHHHH----HHccCC------CCChhHHHHHHHHHHH---------CCChhHHHHHHHHHHHCCCCCCHHH
Q 040365 85 -MYAKCARVEDSHR----LFCLLP------VKDAISWNSIIAGCVQ---------NGLFDEGLKFFRQMLIAKIKPRHVS 144 (514)
Q Consensus 85 -~~~~~g~~~~A~~----~f~~~~------~~d~~~~~~li~~~~~---------~g~~~~A~~l~~~m~~~g~~p~~~t 144 (514)
.....|+.++|.+ +|+... .++...|...+....+ .|++++|..+|++..+....+....
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 3345677766654 665431 2356678887776654 6788999999998877311111223
Q ss_pred HHHHHHHH-------------hccCChHHHHHHHHHHH------HcC---CCCc--------HHHHHHHHHHHHhc----
Q 040365 145 FSSIMPAC-------------AHLTTLHLGKQLHGCII------RNG---FDDN--------MFIASSLLDMYAKC---- 190 (514)
Q Consensus 145 ~~~ll~~~-------------~~~~~~~~a~~~~~~~~------~~~---~~~~--------~~~~~~li~~y~k~---- 190 (514)
|....... ...+.+..|..++.... +.. ++|+ ...|...+......
T Consensus 168 ~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~ 247 (530)
T 2ooe_A 168 WRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRT 247 (530)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccC
Confidence 32221110 12234455555544421 111 1222 23444433322211
Q ss_pred CCH----HHHHHHHHhCC---CCChhHHHHHHHHHHh-------CCChH-------HHHHHHHHHHHcCCCCC-HHHHHH
Q 040365 191 GNI----RLARCIFDKMD---LHDIVSWTAVIMGNAL-------HGNAH-------DAISLFEQMEKDGVKPN-SVAFVA 248 (514)
Q Consensus 191 g~~----~~A~~~~~~m~---~~d~~~~~~li~~~~~-------~g~~~-------~A~~l~~~m~~~g~~p~-~~t~~~ 248 (514)
++. +.|..+|++.. ..+...|..+...+.+ .|+.+ +|..+|++..+. +.|+ ...+..
T Consensus 248 ~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~-~~p~~~~l~~~ 326 (530)
T 2ooe_A 248 EDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFA 326 (530)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT-TCSSCHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH-hCcccHHHHHH
Confidence 122 24555555543 2345566666665554 56655 666666666542 2333 455566
Q ss_pred HHHHHHccCCHHHHHHHHHHhHHhcCCCCC-H-hHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC-HHHHHHHHHH-HHh
Q 040365 249 VLTACSHAGLIDKAWSYFNSMTKDYGIAPS-F-EHYAAVADLLGRAGKLQEAYEFISNMHA-GPT-ENVWLTLLSA-CRV 323 (514)
Q Consensus 249 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~-~~~~~li~~~~~~g~~~~A~~~~~~m~~-~p~-~~~~~~ll~~-~~~ 323 (514)
++..+...|++++|..+|+.+.+ +.|+ . ..|..++..+.+.|++++|.++|++... .|+ ...|...... +..
T Consensus 327 ~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~ 403 (530)
T 2ooe_A 327 YADYEESRMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYC 403 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH---SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHhC---ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 66666666667777666666653 2442 2 3566666666666666666666666432 121 2222221111 234
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHhC
Q 040365 324 HKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRNK 374 (514)
Q Consensus 324 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 374 (514)
.|+.+.|..+|+++++..|+++..|..++..+.+.|+.++|..++++....
T Consensus 404 ~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 404 SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp TCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred cCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 666666776676666666666666666666666666666676666666654
No 27
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.74 E-value=2.4e-16 Score=151.02 Aligned_cols=258 Identities=9% Similarity=-0.056 Sum_probs=190.8
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 040365 108 ISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMY 187 (514)
Q Consensus 108 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 187 (514)
..|..+...+...|++++|+.+|+++.+.. +.+...+..+..++...|++++|.+.+..+++.. +.+..++..+...|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 345555666666666666666666665542 2345555566666666666666666666666653 44556666666677
Q ss_pred HhcCCHHHHHHHHHhCC---CCChhHHHHH--------------HH-HHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 040365 188 AKCGNIRLARCIFDKMD---LHDIVSWTAV--------------IM-GNALHGNAHDAISLFEQMEKDGVKPNSVAFVAV 249 (514)
Q Consensus 188 ~k~g~~~~A~~~~~~m~---~~d~~~~~~l--------------i~-~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 249 (514)
.+.|++++|.+.|+++. ..+...+..+ .. .+...|++++|+..++++.+.. +.+...+..+
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 178 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASL 178 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 77777777777666653 1122222222 22 3677888999999999998763 3367788889
Q ss_pred HHHHHccCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCC
Q 040365 250 LTACSHAGLIDKAWSYFNSMTKDYGIAP-SFEHYAAVADLLGRAGKLQEAYEFISNMH--AGPTENVWLTLLSACRVHKN 326 (514)
Q Consensus 250 l~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~ 326 (514)
...+...|++++|..+++.+.+. .| +...+..+...+.+.|++++|.+.++++. .+.+..+|..+...+...|+
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVEL---RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Confidence 99999999999999999988654 34 57888999999999999999999998863 23467889999999999999
Q ss_pred HHHHHHHHHHHHhcCCC------------CcchHHHHHHHHHHccChhHHHHHHHHH
Q 040365 327 VELAGKVAEKIFMIDPN------------NMGAYVILSNTYAAARRWKDAASLRVFM 371 (514)
Q Consensus 327 ~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m 371 (514)
+++|...++++++..|. ++..+..++.+|...|++++|..++++.
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999999999988 6889999999999999999999998643
No 28
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.73 E-value=2.1e-18 Score=180.10 Aligned_cols=148 Identities=11% Similarity=0.100 Sum_probs=127.2
Q ss_pred chhHHHHHHHHHHHCCCHHHHHHHHccCC-------CCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 040365 75 NVCIGSSLINMYAKCARVEDSHRLFCLLP-------VKDAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSS 147 (514)
Q Consensus 75 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~-------~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 147 (514)
-..+||+||++|+++|++++|.++|++|. .||++|||+||.+|++.|++++|+++|++|.+.|+.||.+||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 34689999999999999999999997753 68999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCh-HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCCC-----ChhHHHHHHHHHHhC
Q 040365 148 IMPACAHLTTL-HLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMDLH-----DIVSWTAVIMGNALH 221 (514)
Q Consensus 148 ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~-----d~~~~~~li~~~~~~ 221 (514)
+|.++++.|.. +.|.+++++|.+.|+.||..+|+++++.+.+.+-++...+++..+..+ .+.+.+.|.+.|.+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d 285 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKD 285 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccC
Confidence 99999999985 789999999999999999999999999888876666666665544321 244555566666665
Q ss_pred C
Q 040365 222 G 222 (514)
Q Consensus 222 g 222 (514)
+
T Consensus 286 ~ 286 (1134)
T 3spa_A 286 G 286 (1134)
T ss_dssp S
T ss_pred C
Confidence 5
No 29
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.73 E-value=3e-14 Score=145.24 Aligned_cols=334 Identities=10% Similarity=-0.011 Sum_probs=276.1
Q ss_pred CcchHHHHHHHHHh----cCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHhC----CCChHHHHHHHHHHHHhCCCCch
Q 040365 5 DLVSWNTVIVGLAR----NGLYEEALNIVRQMGNVNLKPDSFTLSSVLPIFAD----YVDVIKGKEIHGYAIRHGLDANV 76 (514)
Q Consensus 5 ~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~ 76 (514)
++.++..|-..|.. .+++++|+..|++..+.| +...+..+...+.. .++.++|...++...+.| +.
T Consensus 74 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 147 (490)
T 2xm6_A 74 YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RD 147 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 55677888888888 899999999999998865 55667777777776 789999999999999876 56
Q ss_pred hHHHHHHHHHHH----CCCHHHHHHHHccCC-CCChhHHHHHHHHHHH----CCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 040365 77 CIGSSLINMYAK----CARVEDSHRLFCLLP-VKDAISWNSIIAGCVQ----NGLFDEGLKFFRQMLIAKIKPRHVSFSS 147 (514)
Q Consensus 77 ~~~~~li~~~~~----~g~~~~A~~~f~~~~-~~d~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 147 (514)
..+..|..+|.. .++.++|.+.|++.. ..+..++..+...|.+ .+++++|++.|++..+.| +...+..
T Consensus 148 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 224 (490)
T 2xm6_A 148 SGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLH 224 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 778888899988 889999999998765 3577889999999988 899999999999998865 4556666
Q ss_pred HHHHHhc----cCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHhCCC-CChhHHHHHHHHH
Q 040365 148 IMPACAH----LTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAK----CGNIRLARCIFDKMDL-HDIVSWTAVIMGN 218 (514)
Q Consensus 148 ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k----~g~~~~A~~~~~~m~~-~d~~~~~~li~~~ 218 (514)
+...+.. .+++++|.+.+....+.| +...+..|..+|.. .++.++|.+.|++..+ .+..++..+...|
T Consensus 225 lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y 301 (490)
T 2xm6_A 225 LADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLY 301 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666664 789999999999998865 45566778888888 8999999999998764 4677888888888
Q ss_pred HhC-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHH
Q 040365 219 ALH-----GNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAG---LIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLG 290 (514)
Q Consensus 219 ~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~ 290 (514)
... +++++|+..|++..+.| +...+..+...+...| +.++|..+|+...+. .++..+..|..+|.
T Consensus 302 ~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~ 374 (490)
T 2xm6_A 302 DKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALL 374 (490)
T ss_dssp HHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHH
T ss_pred HcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHH
Confidence 887 89999999999999875 4456666777777656 889999999998653 46778888999998
Q ss_pred h----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCC---CcchHHHHHHHHHH
Q 040365 291 R----AGKLQEAYEFISNMHAGPTENVWLTLLSACRV----HKNVELAGKVAEKIFMIDPN---NMGAYVILSNTYAA 357 (514)
Q Consensus 291 ~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 357 (514)
. .+++++|.+.|++.....+...+..|...+.. .++.++|...++++.+.+|+ ++.....|..++..
T Consensus 375 ~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 375 QGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred cCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 8 89999999999987655678889999999988 89999999999999999854 66666666655543
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.73 E-value=4e-16 Score=149.49 Aligned_cols=263 Identities=10% Similarity=-0.054 Sum_probs=166.5
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 040365 6 LVSWNTVIVGLARNGLYEEALNIVRQMGNVNLKPDSFTLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSSLINM 85 (514)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 85 (514)
...|..+...+.+.|++++|+.+|+++.... +.+...+..+...+...|++++|.+.+..+++.. +.+
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~---------- 88 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKD---------- 88 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC----------
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCC----------
Confidence 3344455555555555555555555554432 2233444444455555555555555555555442 233
Q ss_pred HHHCCCHHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHH-HHHHH--------------HH
Q 040365 86 YAKCARVEDSHRLFCLLPVKDAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHV-SFSSI--------------MP 150 (514)
Q Consensus 86 ~~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~l--------------l~ 150 (514)
..+|..+...|...|++++|++.|+++.... |+.. .+..+ ..
T Consensus 89 ---------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (327)
T 3cv0_A 89 ---------------------IAVHAALAVSHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSED 145 (327)
T ss_dssp ---------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------
T ss_pred ---------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHh
Confidence 3444555555555555555555555554431 2111 11111 11
Q ss_pred -HHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHH
Q 040365 151 -ACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMD---LHDIVSWTAVIMGNALHGNAHD 226 (514)
Q Consensus 151 -~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~ 226 (514)
.+...|++++|...+..+++.. +.+..++..+...|.+.|++++|.+.|+++. ..+..+|..+...+...|++++
T Consensus 146 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 224 (327)
T 3cv0_A 146 FFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQE 224 (327)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Confidence 2667778888888888877765 4467777888888888888888888887764 3456778888888888888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCC----------CCHhHHHHHHHHHHhcCCHH
Q 040365 227 AISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIA----------PSFEHYAAVADLLGRAGKLQ 296 (514)
Q Consensus 227 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~----------p~~~~~~~li~~~~~~g~~~ 296 (514)
|+..|+++.+.. +.+..++..+...+...|++++|...|+.+.+...-. .+...+..+..++.+.|+.+
T Consensus 225 A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 303 (327)
T 3cv0_A 225 ALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPD 303 (327)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHH
Confidence 888888887752 2346778888888888888988888888876542110 03677888888899999999
Q ss_pred HHHHHHHhC
Q 040365 297 EAYEFISNM 305 (514)
Q Consensus 297 ~A~~~~~~m 305 (514)
+|..++++.
T Consensus 304 ~A~~~~~~~ 312 (327)
T 3cv0_A 304 LVELTYAQN 312 (327)
T ss_dssp HHHHHTTCC
T ss_pred HHHHHHHHH
Confidence 998888764
No 31
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.73 E-value=4.5e-18 Score=177.57 Aligned_cols=132 Identities=14% Similarity=0.193 Sum_probs=111.4
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCC-------CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHH
Q 040365 173 FDDNMFIASSLLDMYAKCGNIRLARCIFDKMD-------LHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVA 245 (514)
Q Consensus 173 ~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~-------~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 245 (514)
...-..+||+||++|+++|++++|.++|++|. .||++|||+||.+|++.|+.++|.++|++|.+.|+.||.+|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 44456789999999999999999999997753 67999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCC-HHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 040365 246 FVAVLTACSHAGL-IDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISNM 305 (514)
Q Consensus 246 ~~~ll~a~~~~g~-~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 305 (514)
|+++|.++++.|+ .++|.++|++|.++ |+.||..+|++++....+.+-++...++..++
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 9999999999887 57889999999665 99999999999998887776555555443333
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.72 E-value=1.1e-15 Score=144.39 Aligned_cols=247 Identities=11% Similarity=0.007 Sum_probs=203.1
Q ss_pred HHHHHHCCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC
Q 040365 114 IAGCVQNGLFDEGLKFFRQMLIAKIKPRH--VSFSSIMPACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCG 191 (514)
Q Consensus 114 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g 191 (514)
|.-....|++..|+..+++... ..|+. .....+.+++...|+++.|...++. .-+|+...+..+...|...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 3445678999999999887644 34544 3456678899999999999876543 24678888899999999999
Q ss_pred CHHHHHHHHHhCC----CC-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 040365 192 NIRLARCIFDKMD----LH-DIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYF 266 (514)
Q Consensus 192 ~~~~A~~~~~~m~----~~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 266 (514)
+.++|.+.++++. .| +...+..+...|.+.|++++|++.+++ ..+...+..+...+.+.|++++|...|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999863 24 566777788999999999999999997 456788889999999999999999999
Q ss_pred HHhHHhcCCCCCHh---HHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 040365 267 NSMTKDYGIAPSFE---HYAAVADLLGRAGKLQEAYEFISNMH--AGPTENVWLTLLSACRVHKNVELAGKVAEKIFMID 341 (514)
Q Consensus 267 ~~m~~~~~~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 341 (514)
+.+.+. .|+.. ....++..+...|++++|..+|+++. .+.+...|+.+..++...|++++|+..++++++.+
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999765 46532 12234455556699999999999874 34678899999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHccChhH-HHHHHHHHHhCC
Q 040365 342 PNNMGAYVILSNTYAAARRWKD-AASLRVFMRNKG 375 (514)
Q Consensus 342 p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~g 375 (514)
|+++.++..++..+...|++++ +.++++++.+..
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999976 578888887643
No 33
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.65 E-value=1.6e-13 Score=141.22 Aligned_cols=331 Identities=11% Similarity=0.019 Sum_probs=241.4
Q ss_pred CChhhHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHCCCHHHHHHHHccCC--CCChhHHHHHHHH
Q 040365 39 PDSFTLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSSLINMYAKCARVEDSHRLFCLLP--VKDAISWNSIIAG 116 (514)
Q Consensus 39 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~--~~d~~~~~~li~~ 116 (514)
-|...|..++.. .+.|++++|..+++.+++.. |.+...|..++..+.+.|++++|.++|++.. .|++..|...+..
T Consensus 11 ~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~ 88 (530)
T 2ooe_A 11 YDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSY 88 (530)
T ss_dssp TCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 356688888884 67899999999999999863 7778899999999999999999999999976 3677788877753
Q ss_pred -HHHCCChhHHHH----HHHHHHH-CCCCCC-HHHHHHHHHHHhc---------cCChHHHHHHHHHHHHcCCCCcHHHH
Q 040365 117 -CVQNGLFDEGLK----FFRQMLI-AKIKPR-HVSFSSIMPACAH---------LTTLHLGKQLHGCIIRNGFDDNMFIA 180 (514)
Q Consensus 117 -~~~~g~~~~A~~----l~~~m~~-~g~~p~-~~t~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~ 180 (514)
....|+.++|.+ +|++... .|..|+ ...|...+..... .|+++.|..+++..++........+|
T Consensus 89 ~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~ 168 (530)
T 2ooe_A 89 VRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLW 168 (530)
T ss_dssp HHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHH
T ss_pred HHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHH
Confidence 345688877765 6766654 355543 4555555555433 68899999999999884222222344
Q ss_pred HHHHHHH-------------HhcCCHHHHHHHHHh-------CC------CCC--------hhHHHHHHHHHHhC----C
Q 040365 181 SSLLDMY-------------AKCGNIRLARCIFDK-------MD------LHD--------IVSWTAVIMGNALH----G 222 (514)
Q Consensus 181 ~~li~~y-------------~k~g~~~~A~~~~~~-------m~------~~d--------~~~~~~li~~~~~~----g 222 (514)
....... .+.++++.|..++.. +. .|+ ...|...+.-.... +
T Consensus 169 ~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~ 248 (530)
T 2ooe_A 169 RDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTE 248 (530)
T ss_dssp HHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCS
T ss_pred HHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCC
Confidence 3332211 134567778776664 11 122 34676666443332 2
Q ss_pred Ch----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-------cCCHH-------HHHHHHHHhHHhcCCCC-CHhHHH
Q 040365 223 NA----HDAISLFEQMEKDGVKPNSVAFVAVLTACSH-------AGLID-------KAWSYFNSMTKDYGIAP-SFEHYA 283 (514)
Q Consensus 223 ~~----~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~-------~g~~~-------~a~~~~~~m~~~~~~~p-~~~~~~ 283 (514)
+. .+|..+|++..... +-+...|..+...+.+ .|+++ +|..+|++..+ .+.| +...|.
T Consensus 249 ~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~--~~~p~~~~l~~ 325 (530)
T 2ooe_A 249 DQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIS--TLLKKNMLLYF 325 (530)
T ss_dssp CSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT--TTCSSCHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHH--HhCcccHHHHH
Confidence 32 47888999988752 2345677777777664 78877 99999998864 2456 588999
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC-CCCC-H-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHH-HHHcc
Q 040365 284 AVADLLGRAGKLQEAYEFISNMH-AGPT-E-NVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNT-YAAAR 359 (514)
Q Consensus 284 ~li~~~~~~g~~~~A~~~~~~m~-~~p~-~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~-~~~~g 359 (514)
.++..+.+.|++++|.++|+++. ..|+ . .+|..++..+.+.|+.+.|..+|+++++..|.+...|...+.. +...|
T Consensus 326 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~ 405 (530)
T 2ooe_A 326 AYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSK 405 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcC
Confidence 99999999999999999999863 3454 3 5899999999999999999999999999888777666655544 34689
Q ss_pred ChhHHHHHHHHHHhC
Q 040365 360 RWKDAASLRVFMRNK 374 (514)
Q Consensus 360 ~~~~a~~~~~~m~~~ 374 (514)
++++|.++|+...+.
T Consensus 406 ~~~~A~~~~e~al~~ 420 (530)
T 2ooe_A 406 DKSVAFKIFELGLKK 420 (530)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHH
Confidence 999999999988764
No 34
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.64 E-value=7.1e-13 Score=143.01 Aligned_cols=321 Identities=11% Similarity=0.055 Sum_probs=234.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhCCC--CCChhhHHHHH---------------------------HHHhCCCChHHH
Q 040365 10 NTVIVGLARNGLYEEALNIVRQMGNVNL--KPDSFTLSSVL---------------------------PIFADYVDVIKG 60 (514)
Q Consensus 10 ~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~ll---------------------------~~~~~~~~~~~a 60 (514)
...+.+|...|.+.+|++++++....+- .-+...-+.++ ..|...|.+++|
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEEA 1068 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEA 1068 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHHHH
Confidence 4568899999999999999999985421 01112222232 234455666666
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHHCCCHHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCC
Q 040365 61 KEIHGYAIRHGLDANVCIGSSLINMYAKCARVEDSHRLFCLLPVKDAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKP 140 (514)
Q Consensus 61 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 140 (514)
.++|++.. ......+.++ -..|++++|.++.++.. +..+|..+..++.+.|++++|++.|.+. -
T Consensus 1069 f~IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA------d 1132 (1630)
T 1xi4_A 1069 FAIFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA------D 1132 (1630)
T ss_pred HHHHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc------C
Confidence 66665531 1111122222 25667777777777653 4667888899999999999999988653 4
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 040365 141 RHVSFSSIMPACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMDLHDIVSWTAVIMGNAL 220 (514)
Q Consensus 141 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~ 220 (514)
|...|..++.+|.+.|+++++.+.+....+.. ++..+.+.++.+|+|.+++++..... ..++...|..+...|..
T Consensus 1133 D~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~ 1207 (1630)
T 1xi4_A 1133 DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYD 1207 (1630)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHh
Confidence 67778888999999999999999998877754 44444456888899998888644443 45566777788888889
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHH
Q 040365 221 HGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYE 300 (514)
Q Consensus 221 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 300 (514)
.|++++|..+|... ..|..+...+.+.|++++|.+.++.. .+..+|..+..++...|++..|..
T Consensus 1208 eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA-------~n~~aWkev~~acve~~Ef~LA~~ 1271 (1630)
T 1xi4_A 1208 EKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQM 1271 (1630)
T ss_pred cCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-------CCHHHHHHHHHHHhhhhHHHHHHH
Confidence 99999999999874 37888889999999999999988865 245788888888888889988888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHc--cChhHHHHHHH
Q 040365 301 FISNMHAGPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAA--RRWKDAASLRV 369 (514)
Q Consensus 301 ~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~a~~~~~ 369 (514)
....+. .++..+..++..|...|.+++|+.+++..+.++|.+...|.-|..+|++. ++..++.+.|.
T Consensus 1272 cgl~Ii--v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1272 CGLHIV--VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHHhhh--cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 776543 34555668888999999999999999999999988888898888887764 34555555554
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.63 E-value=4.9e-14 Score=129.89 Aligned_cols=224 Identities=13% Similarity=0.050 Sum_probs=154.4
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 040365 108 ISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMY 187 (514)
Q Consensus 108 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 187 (514)
..|..+...+...|++++|+..|++..+.. ++...+..+..++...|++++|...+..+++.. |+.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~---------- 71 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQG--REM---------- 71 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHT----------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--ccc----------
Confidence 345555566666666666666666655544 444555555555555555555555555544321 000
Q ss_pred HhcCCHHHHHHHHHhCCCCC----hhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 040365 188 AKCGNIRLARCIFDKMDLHD----IVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAW 263 (514)
Q Consensus 188 ~k~g~~~~A~~~~~~m~~~d----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 263 (514)
.++ ..+|..+...|...|++++|+..|++.... .|+. ..+...|++++|.
T Consensus 72 -----------------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~ 125 (258)
T 3uq3_A 72 -----------------RADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKEL 125 (258)
T ss_dssp -----------------TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHH
T ss_pred -----------------ccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHH
Confidence 001 355666777777777777777777777763 3443 2345567788888
Q ss_pred HHHHHhHHhcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 040365 264 SYFNSMTKDYGIAP-SFEHYAAVADLLGRAGKLQEAYEFISNMH--AGPTENVWLTLLSACRVHKNVELAGKVAEKIFMI 340 (514)
Q Consensus 264 ~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 340 (514)
..++.+.. ..| +...+..+...+...|++++|.+.+++.. .+.+..+|..+...+...|++++|...++++++.
T Consensus 126 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 126 KKAEAEAY---VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHHHHHH---CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 88887754 244 46677788888888888888888888763 2346778888888999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHHccChhHHHHHHHHHHhC
Q 040365 341 DPNNMGAYVILSNTYAAARRWKDAASLRVFMRNK 374 (514)
Q Consensus 341 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 374 (514)
+|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 203 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 203 DPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 9998889999999999999999999998887654
No 36
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.62 E-value=6.1e-14 Score=130.75 Aligned_cols=241 Identities=10% Similarity=-0.075 Sum_probs=188.1
Q ss_pred HCCChhHHHHHHHHHHHCCC---CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHH
Q 040365 119 QNGLFDEGLKFFRQMLIAKI---KPRHVSFSSIMPACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRL 195 (514)
Q Consensus 119 ~~g~~~~A~~l~~~m~~~g~---~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~ 195 (514)
..|++++|+..|+++.+... +.+..++..+...+...|++++|...+..+++.. +.+..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 35778888888888877532 1245567777888888899999999998888875 5567888889999999999999
Q ss_pred HHHHHHhCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHh
Q 040365 196 ARCIFDKMD---LHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKD 272 (514)
Q Consensus 196 A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 272 (514)
|.+.|++.. +.+..+|..+...|...|++++|+..|+++.+. .|+.......+..+...|++++|...++.....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 999998875 346788999999999999999999999999884 466555555556667789999999999877654
Q ss_pred cCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 040365 273 YGIAPSFEHYAAVADLLGRAGKLQEAYEFISNMHAG-PT-----ENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMG 346 (514)
Q Consensus 273 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 346 (514)
. +++...+ .++..+...++.++|.+.+++.... |+ ..+|..+...+...|++++|...++++++.+|++..
T Consensus 174 ~--~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 S--DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp S--CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred C--CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 2 3343444 4777788888899999999886432 32 578899999999999999999999999999997754
Q ss_pred hHHHHHHHHHHccChhHHHHHH
Q 040365 347 AYVILSNTYAAARRWKDAASLR 368 (514)
Q Consensus 347 ~~~~l~~~~~~~g~~~~a~~~~ 368 (514)
.+ ..++...|++++|.+.+
T Consensus 251 ~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 EH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HH---HHHHHHHHHHHHC----
T ss_pred HH---HHHHHHHHHHHhhHHHH
Confidence 44 66778889999988766
No 37
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.61 E-value=1.2e-12 Score=141.37 Aligned_cols=316 Identities=11% Similarity=0.085 Sum_probs=249.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHC
Q 040365 10 NTVIVGLARNGLYEEALNIVRQMGNVNLKPDSFTLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSSLINMYAKC 89 (514)
Q Consensus 10 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 89 (514)
..+...+...|.+++|..+|++... .....+.++. ..+++++|.++..++ .++.+|..+..++.+.
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~ 1118 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQK 1118 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhC
Confidence 3456678889999999999998531 1122233332 567889998888754 4578899999999999
Q ss_pred CCHHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 040365 90 ARVEDSHRLFCLLPVKDAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLGKQLHGCII 169 (514)
Q Consensus 90 g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 169 (514)
|++++|...|.+. .|...|.-++..+.+.|++++|++.|...++.. ++....+.++.+|++.++++....+.
T Consensus 1119 G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---- 1190 (1630)
T 1xi4_A 1119 GMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---- 1190 (1630)
T ss_pred CCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----
Confidence 9999999999764 678889999999999999999999999877754 34333445888999999988655443
Q ss_pred HcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 040365 170 RNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMDLHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAV 249 (514)
Q Consensus 170 ~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 249 (514)
+ .++...+..+.+.|...|++++|..+|... ..|..+...|.+.|++++|++.+++. -+..+|..+
T Consensus 1191 ~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev 1256 (1630)
T 1xi4_A 1191 N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEV 1256 (1630)
T ss_pred h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHH
Confidence 2 445666777999999999999999999996 58999999999999999999999986 366899999
Q ss_pred HHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhc--C
Q 040365 250 LTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISNMH-AG-PTENVWLTLLSACRVH--K 325 (514)
Q Consensus 250 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~-p~~~~~~~ll~~~~~~--~ 325 (514)
-.+|...|++..|...... +..++..+..++..|.+.|.+++|..+++... .. .....|+-|...+.+. +
T Consensus 1257 ~~acve~~Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~pe 1330 (1630)
T 1xi4_A 1257 CFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQ 1330 (1630)
T ss_pred HHHHhhhhHHHHHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHH
Confidence 9999999999999887653 34467778899999999999999999998753 22 3445676666666554 4
Q ss_pred CHHHHHHHHHHHHhcCC-----CCcchHHHHHHHHHHccChhHHHHH
Q 040365 326 NVELAGKVAEKIFMIDP-----NNMGAYVILSNTYAAARRWKDAASL 367 (514)
Q Consensus 326 ~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~a~~~ 367 (514)
+..++.+.|..-....| .+...|.-+...|.+.|+|+.|...
T Consensus 1331 klmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1331 KMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred HHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 56666667766555444 5677899999999999999999853
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.61 E-value=4.8e-14 Score=129.97 Aligned_cols=233 Identities=13% Similarity=0.021 Sum_probs=149.0
Q ss_pred hhHHHHHHHHHHHCCCHHHHHHHHccCCC--CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCC--CCCC----HHHHHH
Q 040365 76 VCIGSSLINMYAKCARVEDSHRLFCLLPV--KDAISWNSIIAGCVQNGLFDEGLKFFRQMLIAK--IKPR----HVSFSS 147 (514)
Q Consensus 76 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~----~~t~~~ 147 (514)
...+..+...|.+.|++++|...|+...+ .+..+|..+...|...|++++|+..|++..+.. ..|+ ..++..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 45788899999999999999999987532 678899999999999999999999999987642 1112 456666
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHH
Q 040365 148 IMPACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMDLHDIVSWTAVIMGNALHGNAHDA 227 (514)
Q Consensus 148 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A 227 (514)
+...+...|++++|...+..+.+.. |+. ..+.+.|++++|...+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~--------------------------- 128 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKA--------------------------- 128 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHH---------------------------
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHH---------------------------
Confidence 7777777777777777777777653 221 2333444445554444
Q ss_pred HHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 040365 228 ISLFEQMEKDGVKPN-SVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISNMH 306 (514)
Q Consensus 228 ~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 306 (514)
+++... .|+ ...+..+...+...|++++|...|+...+.. +.+...+..+...|.+.|++++|.+.+++..
T Consensus 129 ----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 200 (258)
T 3uq3_A 129 ----EAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAI 200 (258)
T ss_dssp ----HHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----HHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 444432 222 2334444455555555555555555554321 1134555555666666666666666665542
Q ss_pred --CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCCcchHHHHH
Q 040365 307 --AGPTENVWLTLLSACRVHKNVELAGKVAEKIFMID------PNNMGAYVILS 352 (514)
Q Consensus 307 --~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~ 352 (514)
.+.+..+|..+...+...|++++|...+++++++. |.+...+..+.
T Consensus 201 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 201 EKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHH
Confidence 22346667777777777777777777777777766 65555444443
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.60 E-value=5.1e-14 Score=126.88 Aligned_cols=192 Identities=12% Similarity=0.037 Sum_probs=151.0
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHH
Q 040365 174 DDNMFIASSLLDMYAKCGNIRLARCIFDKMD---LHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKP-NSVAFVAV 249 (514)
Q Consensus 174 ~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~l 249 (514)
+++...+..+...|.+.|++++|...|++.. +.+...|..+...+.+.|++++|+..|++..+. .| +...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 4566677778888888888888888888764 346678888888888899999999999988875 34 45677788
Q ss_pred HHHHHcc-----------CCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHH
Q 040365 250 LTACSHA-----------GLIDKAWSYFNSMTKDYGIAP-SFEHYAAVADLLGRAGKLQEAYEFISNMH--AGPTENVWL 315 (514)
Q Consensus 250 l~a~~~~-----------g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~ 315 (514)
..++... |++++|...|+...+. .| +...+..+..+|...|++++|.+.|++.. . .+...|.
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~ 155 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHH
Confidence 8888888 9999999999988754 56 57888899999999999999999998762 3 7888999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHH
Q 040365 316 TLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFM 371 (514)
Q Consensus 316 ~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 371 (514)
.+..++...|++++|...++++++.+|+++..+..++.++...|++++|.+.+++.
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988754
No 40
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.56 E-value=2.6e-13 Score=126.40 Aligned_cols=241 Identities=13% Similarity=0.046 Sum_probs=128.8
Q ss_pred HHHHHHHHHHCCCHHHHHHHHccCC---CCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHh
Q 040365 79 GSSLINMYAKCARVEDSHRLFCLLP---VKDAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPR--HVSFSSIMPACA 153 (514)
Q Consensus 79 ~~~li~~~~~~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~~~~ 153 (514)
.......+.+.|++++|...|+... ..+...|..+...|.+.|++++|+..|++..+.+..|+ ...|..+...+.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 3344555666666666666666543 22344566666666666666666666666655321111 122455555555
Q ss_pred ccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCC---CChhHHHHHHHHHHhCCChHHHHHH
Q 040365 154 HLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMDL---HDIVSWTAVIMGNALHGNAHDAISL 230 (514)
Q Consensus 154 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l 230 (514)
..|++++|...+..+++.. +.+..++..+...|.+.|++++|.+.|++... .+...|..+...+...+++++|++.
T Consensus 86 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666655543 33344555555555555555555555555442 2333444444122222355555555
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCC---HHHHHHHHHhCC-
Q 040365 231 FEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGK---LQEAYEFISNMH- 306 (514)
Q Consensus 231 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~- 306 (514)
|++..+. .|+ +...+..+...+...|+ +++|...+++..
T Consensus 165 ~~~a~~~--~p~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 207 (272)
T 3u4t_A 165 FVKVLEL--KPN-----------------------------------IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207 (272)
T ss_dssp HHHHHHH--STT-----------------------------------CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHH
T ss_pred HHHHHHh--Ccc-----------------------------------chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHH
Confidence 5544442 222 23333344444444444 333444333321
Q ss_pred ---CCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Q 040365 307 ---AGPT------ENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAA 357 (514)
Q Consensus 307 ---~~p~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 357 (514)
..|+ ..+|..+...+...|++++|...++++++++|+++.+...+......
T Consensus 208 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 208 VCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEH 267 (272)
T ss_dssp HHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-----
T ss_pred HHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcc
Confidence 1122 24677788888999999999999999999999988777666555443
No 41
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.55 E-value=2.9e-13 Score=121.95 Aligned_cols=195 Identities=12% Similarity=-0.069 Sum_probs=127.5
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 040365 4 SDLVSWNTVIVGLARNGLYEEALNIVRQMGNVNLKPDSFTLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSSLI 83 (514)
Q Consensus 4 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 83 (514)
++...|..+...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|...++.+++.. |.+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 467788888889999999999999999988754 4456678888888889999999999999998876 56677788888
Q ss_pred HHHHHC-----------CCHHHHHHHHccCC---CCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040365 84 NMYAKC-----------ARVEDSHRLFCLLP---VKDAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIM 149 (514)
Q Consensus 84 ~~~~~~-----------g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 149 (514)
..|.+. |++++|...|++.. ..+...|..+...|.+.|++++|+..|++..+.. .+...+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 888877 66666666666543 2245556666666666666666666666666554 4555556666
Q ss_pred HHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 040365 150 PACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKM 203 (514)
Q Consensus 150 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m 203 (514)
.++...|++++|...++.+++.. +.+...+..+...|.+.|++++|.+.|++.
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 66666666666666666666553 344555555666666666666666555543
No 42
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.55 E-value=1.8e-12 Score=131.09 Aligned_cols=332 Identities=12% Similarity=-0.026 Sum_probs=214.7
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHhhC-----C-CCC-ChhhHHHHHHHHh--CCCChHHHHHHHHHHHHhCCCCc
Q 040365 5 DLVSWNTVIVGLARNGLYEEALNIVRQMGNV-----N-LKP-DSFTLSSVLPIFA--DYVDVIKGKEIHGYAIRHGLDAN 75 (514)
Q Consensus 5 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g-~~p-~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~~~~ 75 (514)
..++|+.+...|...|++++|+..|++.... + ..+ ...++.....++. ..+++++|...|+.+++.. |.+
T Consensus 93 ~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~ 171 (472)
T 4g1t_A 93 SLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKN 171 (472)
T ss_dssp THHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTC
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCC
Confidence 4578999999999999999999999887542 1 112 2345555444443 3467899999999999885 455
Q ss_pred hhHHHHHHHHH---HHCCCHHHHHHHHccCC---CCChhHHHHHHHHHHH----CCChhHHHHHHHHHHHCCCCCCHHHH
Q 040365 76 VCIGSSLINMY---AKCARVEDSHRLFCLLP---VKDAISWNSIIAGCVQ----NGLFDEGLKFFRQMLIAKIKPRHVSF 145 (514)
Q Consensus 76 ~~~~~~li~~~---~~~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~ 145 (514)
+..+..+...+ ...++.++|.+.|++.. ..+..++..+...+.. .|++++|.+++++..... +.+...+
T Consensus 172 ~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~ 250 (472)
T 4g1t_A 172 PEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVL 250 (472)
T ss_dssp HHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHH
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHH
Confidence 66666665553 45677777777776543 3456667666655544 467889999999987753 4566778
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc-------------------CCHHHHHHHHHhCC--
Q 040365 146 SSIMPACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKC-------------------GNIRLARCIFDKMD-- 204 (514)
Q Consensus 146 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~-------------------g~~~~A~~~~~~m~-- 204 (514)
..+...+...|++++|...+..+++.. +.+..++..+...|... +..+.|...|++..
T Consensus 251 ~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 329 (472)
T 4g1t_A 251 RSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA 329 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc
Confidence 889999999999999999999999875 55667777777666432 23566777776653
Q ss_pred -CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH--HHHHHHH-HHHccCCHHHHHHHHHHhHHhcCCCCCHh
Q 040365 205 -LHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSV--AFVAVLT-ACSHAGLIDKAWSYFNSMTKDYGIAPSFE 280 (514)
Q Consensus 205 -~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~-a~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 280 (514)
..+..+|..+...|...|++++|++.|++.......|... .+..+.. ...+.|+.++|+..|....+ +.|+..
T Consensus 330 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~ 406 (472)
T 4g1t_A 330 NDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSR 406 (472)
T ss_dssp CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCH
T ss_pred CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccH
Confidence 4466789999999999999999999999998864443321 2222222 34578999999999998764 456543
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 040365 281 HYAAVADLLGRAGKLQEAYEFISNM-H-AGPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVIL 351 (514)
Q Consensus 281 ~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 351 (514)
..... ...+.++++.. . .+.+..+|..|...+...|++++|+..|+++++++|.++.++.-+
T Consensus 407 ~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 407 EKEKM---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHH---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 22222 22333344332 1 234677899999999999999999999999999998777655443
No 43
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.54 E-value=4.3e-12 Score=118.41 Aligned_cols=226 Identities=10% Similarity=-0.023 Sum_probs=142.0
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHHcCCCCcHHHHH
Q 040365 106 DAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAH----LTTLHLGKQLHGCIIRNGFDDNMFIAS 181 (514)
Q Consensus 106 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 181 (514)
+..++..+...|...|++++|++.|++..+. -+...+..+...+.. .+++++|...+.+..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4556666677777777777777777777662 234455556666666 677777777777776654 455566
Q ss_pred HHHHHHHh----cCCHHHHHHHHHhCC-CCChhHHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 040365 182 SLLDMYAK----CGNIRLARCIFDKMD-LHDIVSWTAVIMGNAL----HGNAHDAISLFEQMEKDGVKPNSVAFVAVLTA 252 (514)
Q Consensus 182 ~li~~y~k----~g~~~~A~~~~~~m~-~~d~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 252 (514)
.|..+|.. .|++++|.+.|++.. ..+..++..+...|.. .+++++|+..|++..+.+ +...+..+...
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 66666666 677777776666654 2355566666666666 677777777777766654 34455555555
Q ss_pred HHc----cCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-
Q 040365 253 CSH----AGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGR----AGKLQEAYEFISNMHAGPTENVWLTLLSACRV- 323 (514)
Q Consensus 253 ~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~- 323 (514)
+.. .+++++|...|+...+. .+...+..+..+|.. .+++++|.+.+++.....+...+..|...+..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNG 231 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcC
Confidence 555 66777777777666432 234555566666666 66666666666654323335556666666666
Q ss_pred ---cCCHHHHHHHHHHHHhcCCCC
Q 040365 324 ---HKNVELAGKVAEKIFMIDPNN 344 (514)
Q Consensus 324 ---~~~~~~a~~~~~~~~~~~p~~ 344 (514)
.+++++|...++++.+.+|++
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred CCcccCHHHHHHHHHHHHHcCCHH
Confidence 666666666666666666543
No 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.54 E-value=2.1e-12 Score=118.80 Aligned_cols=205 Identities=12% Similarity=0.058 Sum_probs=104.8
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 040365 107 AISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDM 186 (514)
Q Consensus 107 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 186 (514)
...|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|.+.+..+.+.. +.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~----------- 103 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SR----------- 103 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT-----------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cC-----------
Confidence 3455566666666666666666666655432 2233344444444444444444444444444332 12
Q ss_pred HHhcCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHH
Q 040365 187 YAKCGNIRLARCIFDKMDLHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPN-SVAFVAVLTACSHAGLIDKAWSY 265 (514)
Q Consensus 187 y~k~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 265 (514)
+...|..+...|...|++++|+++|+++...+..|+ ...+..+...+...|++++|..+
T Consensus 104 --------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 163 (252)
T 2ho1_A 104 --------------------NARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEY 163 (252)
T ss_dssp --------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --------------------cHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 233344444444444444444444444444222332 23444455555555555555555
Q ss_pred HHHhHHhcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 040365 266 FNSMTKDYGIAP-SFEHYAAVADLLGRAGKLQEAYEFISNMH--AGPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDP 342 (514)
Q Consensus 266 ~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 342 (514)
|+.+.+. .| +...+..+...|.+.|++++|.+.++++. .+.+...+..+...+...|+.++|...++++.+..|
T Consensus 164 ~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 164 FEKSLRL---NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHhc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 5555432 22 34455555555666666666666655542 123445556666666666666666666666666666
Q ss_pred CCcch
Q 040365 343 NNMGA 347 (514)
Q Consensus 343 ~~~~~ 347 (514)
+++..
T Consensus 241 ~~~~~ 245 (252)
T 2ho1_A 241 GSLEY 245 (252)
T ss_dssp TSHHH
T ss_pred CCHHH
Confidence 65443
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.54 E-value=1.1e-12 Score=120.66 Aligned_cols=197 Identities=11% Similarity=-0.035 Sum_probs=170.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 040365 177 MFIASSLLDMYAKCGNIRLARCIFDKMD---LHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTAC 253 (514)
Q Consensus 177 ~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 253 (514)
...+..+...|...|++++|.+.|+++. ..+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 5667778888888999999999888764 4467788899999999999999999999998863 33667888899999
Q ss_pred HccCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHH
Q 040365 254 SHAGLIDKAWSYFNSMTKDYGIAP-SFEHYAAVADLLGRAGKLQEAYEFISNMH--AGPTENVWLTLLSACRVHKNVELA 330 (514)
Q Consensus 254 ~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a 330 (514)
...|++++|..+|+.+.+ .+..| +...+..+...+.+.|++++|.+.+++.. .+.+..+|..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999865 23456 56788889999999999999999998863 234688899999999999999999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHhCC
Q 040365 331 GKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRNKG 375 (514)
Q Consensus 331 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 375 (514)
...++++.+..|++...+..++..|...|++++|.+.++.+.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999997754
No 46
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.54 E-value=5.7e-13 Score=124.09 Aligned_cols=241 Identities=9% Similarity=-0.077 Sum_probs=167.7
Q ss_pred HhcCChhHHHHHHHHHhhCCCC---CChhhHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHCCCHH
Q 040365 17 ARNGLYEEALNIVRQMGNVNLK---PDSFTLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSSLINMYAKCARVE 93 (514)
Q Consensus 17 ~~~g~~~~A~~l~~~m~~~g~~---p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 93 (514)
...|++++|+..|+++.+.... .+..++..+...+...|++++|...+..+++.. +.+..++..+...|...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 3457889999999998875321 134567788888889999999999999998875 557788888999999999999
Q ss_pred HHHHHHccCC---CCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 040365 94 DSHRLFCLLP---VKDAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLGKQLHGCIIR 170 (514)
Q Consensus 94 ~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 170 (514)
+|.+.|+... ..+..+|..+...|.+.|++++|+..|+++.+. .|+.......+..+...|++++|...+.....
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 9999888765 346778888888899999999999999888874 45555555555556667888888888877776
Q ss_pred cCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-------hhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH
Q 040365 171 NGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMDLHD-------IVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNS 243 (514)
Q Consensus 171 ~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~d-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 243 (514)
.. +++...+. ++..+...++.++|.+.+++....+ ..+|..+...|...|++++|...|++.... .|+.
T Consensus 173 ~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~ 248 (275)
T 1xnf_A 173 KS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN 248 (275)
T ss_dssp HS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT
T ss_pred cC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh
Confidence 54 33333333 6666777777777777777765332 355666666777777777777777776653 3422
Q ss_pred HHHHHHHHHHHccCCHHHHHHHH
Q 040365 244 VAFVAVLTACSHAGLIDKAWSYF 266 (514)
Q Consensus 244 ~t~~~ll~a~~~~g~~~~a~~~~ 266 (514)
+.....++...|++++|++.+
T Consensus 249 --~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 --FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --CHHHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHHHhhHHHH
Confidence 111233444555555555443
No 47
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.54 E-value=1.1e-12 Score=128.18 Aligned_cols=246 Identities=12% Similarity=0.057 Sum_probs=202.5
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-hHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 040365 106 DAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTT-LHLGKQLHGCIIRNGFDDNMFIASSLL 184 (514)
Q Consensus 106 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li 184 (514)
+...|+.+...+.+.|++++|+..|++..+.. +-+...|..+..++...|+ +++|...++++++.. +.+..+|+.+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 34578888999999999999999999998853 3356677888888999996 999999999999876 56788999999
Q ss_pred HHHHhcCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-cCCHH
Q 040365 185 DMYAKCGNIRLARCIFDKMD---LHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSH-AGLID 260 (514)
Q Consensus 185 ~~y~k~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~-~g~~~ 260 (514)
.+|.+.|++++|...|+++. ..+...|..+..++.+.|++++|+..|+++++... -+...|..+..++.. .|..+
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcch
Confidence 99999999999999999875 55788999999999999999999999999998532 256788888888888 66657
Q ss_pred HH-----HHHHHHhHHhcCCCC-CHhHHHHHHHHHHhcC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC------
Q 040365 261 KA-----WSYFNSMTKDYGIAP-SFEHYAAVADLLGRAG--KLQEAYEFISNMHAGP-TENVWLTLLSACRVHK------ 325 (514)
Q Consensus 261 ~a-----~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~~~------ 325 (514)
+| +..|+...+. .| +...|..+..+|...| ++++|.+++.++...| +...+..|...+...|
T Consensus 253 eA~~~~el~~~~~Al~l---~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKL---VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 77 4778777643 56 5778888888898888 6899999998874334 5678888888888764
Q ss_pred ---CHHHHHHHHHHH-HhcCCCCcchHHHHHHHHHH
Q 040365 326 ---NVELAGKVAEKI-FMIDPNNMGAYVILSNTYAA 357 (514)
Q Consensus 326 ---~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~ 357 (514)
..++|+.+++++ .+++|.....|..++..+..
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 358999999999 89999988888877776654
No 48
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.54 E-value=1.8e-12 Score=116.63 Aligned_cols=197 Identities=10% Similarity=-0.036 Sum_probs=126.1
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 040365 176 NMFIASSLLDMYAKCGNIRLARCIFDKMD---LHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTA 252 (514)
Q Consensus 176 ~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 252 (514)
+..++..+...|...|++++|.+.|+++. ..+...|..+...|...|++++|.+.|+++.... +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 34455556666666666666666666543 2345566666666666677777777776666542 2244566666666
Q ss_pred HHcc-CCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHH
Q 040365 253 CSHA-GLIDKAWSYFNSMTKDYGIAP-SFEHYAAVADLLGRAGKLQEAYEFISNMH--AGPTENVWLTLLSACRVHKNVE 328 (514)
Q Consensus 253 ~~~~-g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~ 328 (514)
+... |++++|..+++.+.+ .+..| +...+..+...+...|++++|.+.++++. .+.+...|..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 6677 777777777776654 22333 24566666667777777777777766542 1234666777777777777777
Q ss_pred HHHHHHHHHHhcCC-CCcchHHHHHHHHHHccChhHHHHHHHHHHhC
Q 040365 329 LAGKVAEKIFMIDP-NNMGAYVILSNTYAAARRWKDAASLRVFMRNK 374 (514)
Q Consensus 329 ~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 374 (514)
+|...++++++..| ++...+..+...+...|+.+.|...++.+.+.
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 77777777777777 66677777777777777777777777766543
No 49
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.53 E-value=3.7e-12 Score=114.52 Aligned_cols=172 Identities=12% Similarity=0.031 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhC-CChHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 040365 177 MFIASSLLDMYAKCGNIRLARCIFDKMD---LHDIVSWTAVIMGNALH-GNAHDAISLFEQMEKDGVKPN-SVAFVAVLT 251 (514)
Q Consensus 177 ~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~ 251 (514)
...+..+...|...|++++|.+.|++.. ..+..+|..+...|... |++++|+..|+++.+.+..|+ ...+..+..
T Consensus 42 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 121 (225)
T 2vq2_A 42 ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGI 121 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHH
Confidence 3344444555555555555555555442 23445666666667777 777777777777766333343 456667777
Q ss_pred HHHccCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhCC--CC-CCHHHHHHHHHHHHhcCCH
Q 040365 252 ACSHAGLIDKAWSYFNSMTKDYGIAP-SFEHYAAVADLLGRAGKLQEAYEFISNMH--AG-PTENVWLTLLSACRVHKNV 327 (514)
Q Consensus 252 a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~-p~~~~~~~ll~~~~~~~~~ 327 (514)
++...|++++|...|+.+.+. .| +...+..+...+.+.|++++|.+.++++. .+ .+...+..+...+...|+.
T Consensus 122 ~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (225)
T 2vq2_A 122 CSAKQGQFGLAEAYLKRSLAA---QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNA 198 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcH
Confidence 777788888888888777543 33 46677778888888888888888887753 22 4666777777788888999
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHH
Q 040365 328 ELAGKVAEKIFMIDPNNMGAYVIL 351 (514)
Q Consensus 328 ~~a~~~~~~~~~~~p~~~~~~~~l 351 (514)
+.+...++.+.+..|+++.....+
T Consensus 199 ~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 199 QAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHh
Confidence 999999998888888877655443
No 50
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.52 E-value=9.5e-12 Score=116.06 Aligned_cols=224 Identities=12% Similarity=-0.024 Sum_probs=195.1
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHhCC-CCChhHHHHHH
Q 040365 141 RHVSFSSIMPACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAK----CGNIRLARCIFDKMD-LHDIVSWTAVI 215 (514)
Q Consensus 141 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k----~g~~~~A~~~~~~m~-~~d~~~~~~li 215 (514)
+..++..+...+...+++++|.+.+....+. .+...+..|...|.. .|++++|.+.|++.. ..+..++..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4566777788888999999999999999983 355678889999999 999999999999875 34778899999
Q ss_pred HHHHh----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHH
Q 040365 216 MGNAL----HGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSH----AGLIDKAWSYFNSMTKDYGIAPSFEHYAAVAD 287 (514)
Q Consensus 216 ~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 287 (514)
..|.. .+++++|+..|++..+.+ +...+..+...+.. .+++++|..+|+...+. + +...+..+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~ 154 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGS 154 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHH
Confidence 99999 999999999999999875 67788888888988 99999999999998653 3 5667788888
Q ss_pred HHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH--
Q 040365 288 LLGR----AGKLQEAYEFISNMHAGPTENVWLTLLSACRV----HKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAA-- 357 (514)
Q Consensus 288 ~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-- 357 (514)
.|.. .+++++|.+.+++.....+...+..+...+.. .+++++|...++++.+.+| +..+..|..+|..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGE 232 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCC
Confidence 8888 99999999999987545677888999999999 9999999999999999876 6788899999999
Q ss_pred --ccChhHHHHHHHHHHhCCC
Q 040365 358 --ARRWKDAASLRVFMRNKGM 376 (514)
Q Consensus 358 --~g~~~~a~~~~~~m~~~g~ 376 (514)
.+++++|.+.+++..+.|.
T Consensus 233 ~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHHTC
T ss_pred CcccCHHHHHHHHHHHHHcCC
Confidence 9999999999999987763
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.52 E-value=4.8e-13 Score=122.15 Aligned_cols=143 Identities=16% Similarity=0.098 Sum_probs=80.5
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHH
Q 040365 208 IVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVAD 287 (514)
Q Consensus 208 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 287 (514)
...|..+...|...|++++|++.|+++.+.. +.+...+..+...+...|++++|..+++.+.+.. +.+...+..+..
T Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~ 167 (243)
T 2q7f_A 91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN--ENDTEARFQFGM 167 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CccHHHHHHHHH
Confidence 3444445555555555555555555555432 2234445555555556666666666666554321 123455555666
Q ss_pred HHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 040365 288 LLGRAGKLQEAYEFISNMH--AGPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSN 353 (514)
Q Consensus 288 ~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 353 (514)
.+.+.|++++|.+.++++. .+.+..+|..+...+...|++++|...++++++.+|+++..+..+..
T Consensus 168 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 235 (243)
T 2q7f_A 168 CLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKL 235 (243)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHH
Confidence 6666666666666665542 12345566666667777777777777777777777766655554443
No 52
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.50 E-value=4.8e-12 Score=117.70 Aligned_cols=228 Identities=10% Similarity=-0.062 Sum_probs=182.0
Q ss_pred hhhHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHCCCHHHHHHHHccCCC--CC----hhHHHHHH
Q 040365 41 SFTLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSSLINMYAKCARVEDSHRLFCLLPV--KD----AISWNSII 114 (514)
Q Consensus 41 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~d----~~~~~~li 114 (514)
...+......+...|++++|...+..+++.. +.+..++..+...|.+.|++++|...|+...+ ++ ..+|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 3445566778889999999999999999875 55667889999999999999999999987653 22 23488999
Q ss_pred HHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHH-HHHHhcCCH
Q 040365 115 AGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLL-DMYAKCGNI 193 (514)
Q Consensus 115 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~y~k~g~~ 193 (514)
..|...|++++|+..|++..+.. +.+...+..+...+...|++++|...+...++.. +.+..++..+. ..|. .+++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~-~~~~ 158 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYY-NKEY 158 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHH-TTCH
T ss_pred HHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHH-HHHH
Confidence 99999999999999999998853 4466788899999999999999999999998773 55677777787 5555 5699
Q ss_pred HHHHHHHHhCC---CCChhHHHHHHHHHHhCCC---hHHHHHHHHHHHHcC-CCCCH------HHHHHHHHHHHccCCHH
Q 040365 194 RLARCIFDKMD---LHDIVSWTAVIMGNALHGN---AHDAISLFEQMEKDG-VKPNS------VAFVAVLTACSHAGLID 260 (514)
Q Consensus 194 ~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g-~~p~~------~t~~~ll~a~~~~g~~~ 260 (514)
++|.+.|++.. +.+...|..+...+...|+ +++|...|++..+.. -.|+. ..|..+...+...|+++
T Consensus 159 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 159 VKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 99999999875 3456778888888888888 888999999887631 22331 45666777778888888
Q ss_pred HHHHHHHHhHHh
Q 040365 261 KAWSYFNSMTKD 272 (514)
Q Consensus 261 ~a~~~~~~m~~~ 272 (514)
+|..+|+...+.
T Consensus 239 ~A~~~~~~al~~ 250 (272)
T 3u4t_A 239 KADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 888888877643
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.49 E-value=1e-12 Score=119.99 Aligned_cols=198 Identities=10% Similarity=0.045 Sum_probs=155.1
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 040365 175 DNMFIASSLLDMYAKCGNIRLARCIFDKMD---LHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLT 251 (514)
Q Consensus 175 ~~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 251 (514)
.....+..+...|.+.|++++|...|+++. ..+...|..+...|...|++++|+..|++..+.. +.+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 345566777788888999999988888874 3467788889999999999999999999998863 335678888999
Q ss_pred HHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHH
Q 040365 252 ACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISNMH--AGPTENVWLTLLSACRVHKNVEL 329 (514)
Q Consensus 252 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~ 329 (514)
.+...|++++|..+++.+.+.. +.+...+..+...+.+.|++++|.+.++++. .+.+...|..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999987642 3367888899999999999999999998863 23568889999999999999999
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHhCC
Q 040365 330 AGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRNKG 375 (514)
Q Consensus 330 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 375 (514)
|...++++.+..|+++.++..++.+|...|++++|.+.+++..+..
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999999999987643
No 54
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.49 E-value=1.6e-12 Score=130.68 Aligned_cols=343 Identities=10% Similarity=-0.029 Sum_probs=207.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCCh---HHHHHHHHHHHHhCCCCchhHHHHHHHHHHH
Q 040365 12 VIVGLARNGLYEEALNIVRQMGNVNLKPDSFTLSSVLPIFADYVDV---IKGKEIHGYAIRHGLDANVCIGSSLINMYAK 88 (514)
Q Consensus 12 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 88 (514)
+...+.+.|++++|+.+|++..+.| +...+..+...+...|+. ++|...+....+. ++..+..|..++..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 4566777888888888888887765 233334444455556666 7888888877754 44555666664555
Q ss_pred CC-----CHHHHHHHHccCCCC-ChhHHHHHHHHHHHCCChh---HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChH
Q 040365 89 CA-----RVEDSHRLFCLLPVK-DAISWNSIIAGCVQNGLFD---EGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLH 159 (514)
Q Consensus 89 ~g-----~~~~A~~~f~~~~~~-d~~~~~~li~~~~~~g~~~---~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 159 (514)
.| +.++|.+.|+...++ +..++..|...|...+..+ ++++.+.+....|. ......+...+...+.++
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGG
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcc
Confidence 54 677888888775533 4557777777777766543 34445555444442 334445555666666444
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC---CHHHHHHHHHhCC---CCChhHHHHHHHHHHhC----CChHHHHH
Q 040365 160 LGKQLHGCIIRNGFDDNMFIASSLLDMYAKCG---NIRLARCIFDKMD---LHDIVSWTAVIMGNALH----GNAHDAIS 229 (514)
Q Consensus 160 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g---~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~----g~~~~A~~ 229 (514)
.+......+.+.-...+...+..|..+|.+.| +.++|.+.|++.. .++...+..+...|... +++++|+.
T Consensus 159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 44433333322222233337777888888888 8888888887764 33444446666666544 67888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHH-H--HccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcC-----CHHHHHHH
Q 040365 230 LFEQMEKDGVKPNSVAFVAVLTA-C--SHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAG-----KLQEAYEF 301 (514)
Q Consensus 230 l~~~m~~~g~~p~~~t~~~ll~a-~--~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~~ 301 (514)
+|++.. .| +...+..+... + ...++.++|..+|+...+. | +...+..|..+|. .| ++++|.+.
T Consensus 239 ~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~ 309 (452)
T 3e4b_A 239 LLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAH 309 (452)
T ss_dssp HHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHH
T ss_pred HHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHH
Confidence 888876 33 33444445444 3 4578888888888887543 3 5666667777776 44 88888888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH----ccChhHHHHHHHHHHh
Q 040365 302 ISNMHAGPTENVWLTLLSACRV----HKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAA----ARRWKDAASLRVFMRN 373 (514)
Q Consensus 302 ~~~m~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~ 373 (514)
|++.. ..+...+..|...|.. ..+.++|...+++..+.+ ++.....|..+|.. ..+.++|...++...+
T Consensus 310 ~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 310 FEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp HHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred HHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 88877 6677777777777765 348888888888877654 45677788888875 4578888888888877
Q ss_pred CCC
Q 040365 374 KGM 376 (514)
Q Consensus 374 ~g~ 376 (514)
.|.
T Consensus 387 ~g~ 389 (452)
T 3e4b_A 387 QDT 389 (452)
T ss_dssp TCC
T ss_pred CCC
Confidence 764
No 55
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.48 E-value=3.7e-12 Score=128.05 Aligned_cols=311 Identities=9% Similarity=0.016 Sum_probs=209.4
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHCCCH---HHHHHHHccCCCCChhHHHHHHHHHHHCC--
Q 040365 47 VLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSSLINMYAKCARV---EDSHRLFCLLPVKDAISWNSIIAGCVQNG-- 121 (514)
Q Consensus 47 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~f~~~~~~d~~~~~~li~~~~~~g-- 121 (514)
+...+.+.|++++|.+++..+.+.| +...+..|..+|...|+. ++|...|+...+.++.++..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 4455567789999999999998887 334445566777777887 89999998887667777777777566655
Q ss_pred ---ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh---HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC----
Q 040365 122 ---LFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTL---HLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCG---- 191 (514)
Q Consensus 122 ---~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g---- 191 (514)
++++|+..|++..+.|.. + .+..+...|...+.. ..+.+.+....+.|. ......|...|...+
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~~-~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGEG-N--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTCS-S--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGG
T ss_pred CCcCHHHHHHHHHHHHHCCCH-H--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCccc
Confidence 678999999998887643 3 444455555544433 334555555555553 445666778888877
Q ss_pred CHHHHHHHHHhCCCCChhHHHHHHHHHHhCC---ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc----CCHHHHHH
Q 040365 192 NIRLARCIFDKMDLHDIVSWTAVIMGNALHG---NAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHA----GLIDKAWS 264 (514)
Q Consensus 192 ~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~----g~~~~a~~ 264 (514)
+.+.|..+++.....+..++..+...|...| +.++|++.|++..+.| .++...+..+...|... ++.++|..
T Consensus 160 ~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 4566667777777777778889999999999 8999999999998876 44555555666666655 78999999
Q ss_pred HHHHhHHhcCCCCCHhHHHHHHHH-H--HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHH
Q 040365 265 YFNSMTKDYGIAPSFEHYAAVADL-L--GRAGKLQEAYEFISNMHAGPTENVWLTLLSACRVHK-----NVELAGKVAEK 336 (514)
Q Consensus 265 ~~~~m~~~~~~~p~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~-----~~~~a~~~~~~ 336 (514)
+|+... .-++..+..|..+ | ...|++++|.++|++.-...+...+..|...|. .| ++++|...|++
T Consensus 239 ~~~~aa-----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~ 312 (452)
T 3e4b_A 239 LLEKIA-----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEK 312 (452)
T ss_dssp HHHHHG-----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHT
T ss_pred HHHHHc-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHH
Confidence 998774 2356666677776 4 568899999999988755567888888888777 55 99999999998
Q ss_pred HHhcCCCCcchHHHHHHHHHH----ccChhHHHHHHHHHHhCCC
Q 040365 337 IFMIDPNNMGAYVILSNTYAA----ARRWKDAASLRVFMRNKGM 376 (514)
Q Consensus 337 ~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~ 376 (514)
.. |.++..+..|..+|.. ..++++|.+.+++..+.|.
T Consensus 313 Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 313 AV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp TT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred Hh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 87 7788889999988887 3489999999998877653
No 56
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.48 E-value=2.9e-12 Score=126.47 Aligned_cols=265 Identities=14% Similarity=0.034 Sum_probs=159.4
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHc----CCCC-cHH
Q 040365 108 ISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPR----HVSFSSIMPACAHLTTLHLGKQLHGCIIRN----GFDD-NMF 178 (514)
Q Consensus 108 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~ 178 (514)
..+......+...|++++|+..|++..+.+ +.+ ...+..+...+...|+++.|...+.++++. +..| ...
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 334444555555555555555555555432 111 123444455555555555555555554332 1111 234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCC-----CC----hhHHHHHHHHHHhCCC--------------------hHHHHH
Q 040365 179 IASSLLDMYAKCGNIRLARCIFDKMDL-----HD----IVSWTAVIMGNALHGN--------------------AHDAIS 229 (514)
Q Consensus 179 ~~~~li~~y~k~g~~~~A~~~~~~m~~-----~d----~~~~~~li~~~~~~g~--------------------~~~A~~ 229 (514)
++..+...|...|++++|...|++... ++ ..++..+...|...|+ +++|+.
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 455566666666666666666655431 11 2356666666666777 777777
Q ss_pred HHHHHHHc----CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC----HhHHHHHHHHHHhcCCHHHHHH
Q 040365 230 LFEQMEKD----GVKPN-SVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPS----FEHYAAVADLLGRAGKLQEAYE 300 (514)
Q Consensus 230 l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~ 300 (514)
.+++.... +..|. ..++..+...+...|++++|...++...+...-.++ ...+..+...|...|++++|.+
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 77665431 11121 235666777777788888888877776543211122 2366777777888888888888
Q ss_pred HHHhCC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------cchHHHHHHHHHHccChhHHHH
Q 040365 301 FISNMH----AGPT----ENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNN------MGAYVILSNTYAAARRWKDAAS 366 (514)
Q Consensus 301 ~~~~m~----~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~ 366 (514)
.+++.. ..++ ..++..+...+...|++++|...++++++..+.. ..++..++.+|...|++++|.+
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 777642 1122 4567777888888888888888888887764322 4577788888888888888888
Q ss_pred HHHHHHh
Q 040365 367 LRVFMRN 373 (514)
Q Consensus 367 ~~~~m~~ 373 (514)
.+++..+
T Consensus 329 ~~~~al~ 335 (406)
T 3sf4_A 329 FAEKHLE 335 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887654
No 57
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.48 E-value=7.9e-13 Score=131.10 Aligned_cols=260 Identities=12% Similarity=-0.006 Sum_probs=153.4
Q ss_pred HHHHHHHCCChhHHHHHHHHHHHCCCCCC-H----HHHHHHHHHHhccCChHHHHHHHHHHHHc----C-CCCcHHHHHH
Q 040365 113 IIAGCVQNGLFDEGLKFFRQMLIAKIKPR-H----VSFSSIMPACAHLTTLHLGKQLHGCIIRN----G-FDDNMFIASS 182 (514)
Q Consensus 113 li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~ 182 (514)
+...+...|++++|+..|++..+.. |+ . ..+..+...+...|++++|...+.+.++. + .+....++..
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 3444455555555555555554431 22 1 23444444455555555555555544332 1 1122344555
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCC---------CChhHHHHHHHHHHhCCC-----------------hHHHHHHHHHHHH
Q 040365 183 LLDMYAKCGNIRLARCIFDKMDL---------HDIVSWTAVIMGNALHGN-----------------AHDAISLFEQMEK 236 (514)
Q Consensus 183 li~~y~k~g~~~~A~~~~~~m~~---------~d~~~~~~li~~~~~~g~-----------------~~~A~~l~~~m~~ 236 (514)
+...|...|++++|...|++... ....+|..+...|...|+ +++|++.+++..+
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 55566666666666665555431 122355566666666666 6666666666543
Q ss_pred c----CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHhCC-
Q 040365 237 D----GVKPN-SVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPS----FEHYAAVADLLGRAGKLQEAYEFISNMH- 306 (514)
Q Consensus 237 ~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~- 306 (514)
. +-.|. ..++..+...+...|++++|..+++...+...-.++ ...+..+...|...|++++|.+.+++..
T Consensus 212 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 1 11111 235666667777777877777777766543111111 2366777777888888888888776642
Q ss_pred ---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------CcchHHHHHHHHHHccChhHHHHHHHHHHh
Q 040365 307 ---AGPT----ENVWLTLLSACRVHKNVELAGKVAEKIFMIDPN------NMGAYVILSNTYAAARRWKDAASLRVFMRN 373 (514)
Q Consensus 307 ---~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 373 (514)
...+ ..++..+...+...|++++|...++++++..+. ...++..++.+|...|++++|.+.+++..+
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 292 LAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1111 456777888888888888888888888776422 234777888899999999999998887765
Q ss_pred C
Q 040365 374 K 374 (514)
Q Consensus 374 ~ 374 (514)
.
T Consensus 372 ~ 372 (411)
T 4a1s_A 372 L 372 (411)
T ss_dssp H
T ss_pred H
Confidence 3
No 58
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.47 E-value=3.2e-12 Score=122.28 Aligned_cols=263 Identities=15% Similarity=0.052 Sum_probs=174.9
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhccCChHHHHHHHHHHHHc----CCC-CcHHH
Q 040365 110 WNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPR-----HVSFSSIMPACAHLTTLHLGKQLHGCIIRN----GFD-DNMFI 179 (514)
Q Consensus 110 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~ 179 (514)
+......+...|++++|+..|++..+.. |+ ...+..+...+...|+++.|.+.+...++. +.. ....+
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 3344455666666666666666665542 22 234555556666666666666666655432 111 12445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC-----CCC----hhHHHHHHHHHHhCCC--------------------hHHHHHH
Q 040365 180 ASSLLDMYAKCGNIRLARCIFDKMD-----LHD----IVSWTAVIMGNALHGN--------------------AHDAISL 230 (514)
Q Consensus 180 ~~~li~~y~k~g~~~~A~~~~~~m~-----~~d----~~~~~~li~~~~~~g~--------------------~~~A~~l 230 (514)
+..+...|...|++++|...|++.. .++ ..++..+...|...|+ +++|+..
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 6666777777777777777776653 112 2366677777777777 7777777
Q ss_pred HHHHHHc----CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC----HhHHHHHHHHHHhcCCHHHHHHH
Q 040365 231 FEQMEKD----GVKPN-SVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPS----FEHYAAVADLLGRAGKLQEAYEF 301 (514)
Q Consensus 231 ~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~ 301 (514)
+++.... +..|. ..++..+...+...|++++|...++...+...-.++ ...+..+...+...|++++|.+.
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7765432 11121 245667777888888888888888877543211111 34677788888899999999888
Q ss_pred HHhCC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------CcchHHHHHHHHHHccChhHHHHH
Q 040365 302 ISNMH----AGPT----ENVWLTLLSACRVHKNVELAGKVAEKIFMIDPN------NMGAYVILSNTYAAARRWKDAASL 367 (514)
Q Consensus 302 ~~~m~----~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a~~~ 367 (514)
+++.. ..++ ..++..+...+...|++++|...++++++..|. ...++..++.+|...|++++|.+.
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 325 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 87652 1122 456778888899999999999999998876432 144778899999999999999999
Q ss_pred HHHHHhC
Q 040365 368 RVFMRNK 374 (514)
Q Consensus 368 ~~~m~~~ 374 (514)
+++..+.
T Consensus 326 ~~~a~~~ 332 (338)
T 3ro2_A 326 AEKHLEI 332 (338)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 9988754
No 59
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.47 E-value=5.2e-12 Score=123.42 Aligned_cols=225 Identities=9% Similarity=0.025 Sum_probs=192.3
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC-HHHHHHHHHhCC---CCChhHHHHHHHHH
Q 040365 143 VSFSSIMPACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGN-IRLARCIFDKMD---LHDIVSWTAVIMGN 218 (514)
Q Consensus 143 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~-~~~A~~~~~~m~---~~d~~~~~~li~~~ 218 (514)
..|..+..++...|++++|.+.++++++.. +.+..+|+.+...|.+.|+ +++|...|++.. ..+...|+.+...+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 456667777888999999999999999986 6678899999999999997 999999999885 45778999999999
Q ss_pred HhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHh-cCCH
Q 040365 219 ALHGNAHDAISLFEQMEKDGVKP-NSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAP-SFEHYAAVADLLGR-AGKL 295 (514)
Q Consensus 219 ~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~-~g~~ 295 (514)
...|++++|+..|+++.+. .| +...|..+..++...|++++|+..|+.+.+. .| +...|+.+..+|.+ .|..
T Consensus 177 ~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999985 44 5678999999999999999999999999764 56 67889999999999 6665
Q ss_pred HHH-----HHHHHhCC-CC-CCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcc-------
Q 040365 296 QEA-----YEFISNMH-AG-PTENVWLTLLSACRVHK--NVELAGKVAEKIFMIDPNNMGAYVILSNTYAAAR------- 359 (514)
Q Consensus 296 ~~A-----~~~~~~m~-~~-p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------- 359 (514)
++| ++.+++.. .. .+...|..+...+...| ++++|...++++ +.+|+++..+..|+.+|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred hHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 777 46676652 23 46789999999999888 689999999998 888999999999999999875
Q ss_pred --ChhHHHHHHHHH-HhC
Q 040365 360 --RWKDAASLRVFM-RNK 374 (514)
Q Consensus 360 --~~~~a~~~~~~m-~~~ 374 (514)
.+++|.++++++ .+.
T Consensus 331 ~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 331 EDILNKALELCEILAKEK 348 (382)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 358999999988 443
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.45 E-value=2.5e-12 Score=126.92 Aligned_cols=295 Identities=14% Similarity=0.019 Sum_probs=178.0
Q ss_pred CChhhHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCc----hhHHHHHHHHHHHCCCHHHHHHHHccCCC-----C----
Q 040365 39 PDSFTLSSVLPIFADYVDVIKGKEIHGYAIRHGLDAN----VCIGSSLINMYAKCARVEDSHRLFCLLPV-----K---- 105 (514)
Q Consensus 39 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~f~~~~~-----~---- 105 (514)
+....+......+...|++++|...++.+++.+ +.+ ..++..+...|...|++++|...|++... .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 344455566667777888888888888887774 223 24566677777777777777777665421 1
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCC--------------------hHH
Q 040365 106 DAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKI-KPR----HVSFSSIMPACAHLTT--------------------LHL 160 (514)
Q Consensus 106 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~~~~~~~~--------------------~~~ 160 (514)
...+|..+...|...|++++|+..|.+..+... .++ ..++..+...+...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 133566666667777777777777666544210 011 1233344444444444 333
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCCC--ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 040365 161 GKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMDLH--DIVSWTAVIMGNALHGNAHDAISLFEQMEKDG 238 (514)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~--d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 238 (514)
|...+...++. +.....+ ...+|..+...|...|++++|+..|++..+..
T Consensus 166 A~~~~~~al~~----------------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 217 (406)
T 3sf4_A 166 AVDFYEENLSL----------------------------VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA 217 (406)
T ss_dssp HHHHHHHHHHH----------------------------HHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----------------------------HHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 33333332221 1111101 12355666666666777777777776665421
Q ss_pred -CCCC----HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHhCC---
Q 040365 239 -VKPN----SVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPS----FEHYAAVADLLGRAGKLQEAYEFISNMH--- 306 (514)
Q Consensus 239 -~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~--- 306 (514)
-.++ ..++..+...+...|++++|..+++.......-.++ ...+..+...|...|++++|.+.+++..
T Consensus 218 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 297 (406)
T 3sf4_A 218 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 297 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 0111 235666677777778888887777766432111111 4566777888888888888888877652
Q ss_pred -CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCCcchHHHHHHHHHHccChh
Q 040365 307 -AGPT----ENVWLTLLSACRVHKNVELAGKVAEKIFMID------PNNMGAYVILSNTYAAARRWK 362 (514)
Q Consensus 307 -~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~ 362 (514)
..++ ..++..+...+...|++++|...+++++++. +....++..+..+|...|+..
T Consensus 298 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 298 QELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 1122 4577888888999999999999999988763 223456777888888888764
No 61
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.43 E-value=2.2e-12 Score=130.49 Aligned_cols=192 Identities=8% Similarity=-0.064 Sum_probs=154.4
Q ss_pred CcHHHHHHHHHHHHhcCCH-HHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 040365 175 DNMFIASSLLDMYAKCGNI-RLARCIFDKMD---LHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVL 250 (514)
Q Consensus 175 ~~~~~~~~li~~y~k~g~~-~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 250 (514)
.+...+..+...|...|++ ++|.+.|++.. ..+...|..+...|...|++++|+..|++..+. .|+...+..+.
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg 177 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLS 177 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHH
Confidence 4555666666666667777 77777666653 334667777888888888888888888888774 57777788888
Q ss_pred HHHHcc---------CCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHhc--------CCHHHHHHHHHhCC-CCC--
Q 040365 251 TACSHA---------GLIDKAWSYFNSMTKDYGIAP-SFEHYAAVADLLGRA--------GKLQEAYEFISNMH-AGP-- 309 (514)
Q Consensus 251 ~a~~~~---------g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~--------g~~~~A~~~~~~m~-~~p-- 309 (514)
..+... |++++|...|+...+. .| +...|..+..+|... |++++|.+.|++.. ..|
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 254 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKA 254 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCc
Confidence 888888 8899999999888654 45 577888888888888 88999999998763 234
Q ss_pred --CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHH
Q 040365 310 --TENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFM 371 (514)
Q Consensus 310 --~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 371 (514)
+...|..+..++...|++++|...++++++++|+++.++..+..++...|++++|.+.+.++
T Consensus 255 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 255 SSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 78899999999999999999999999999999999999999999999999999999765443
No 62
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.41 E-value=4.6e-11 Score=104.09 Aligned_cols=163 Identities=15% Similarity=0.112 Sum_probs=118.9
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CHhHHHH
Q 040365 207 DIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKP-NSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAP-SFEHYAA 284 (514)
Q Consensus 207 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ 284 (514)
+...|..+...|.+.|++++|++.|++..+. .| +...+..+..++.+.|++++|...+...... .| +...+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~ 78 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL---DTTSAEAYYI 78 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CchhHHHHHH
Confidence 3455666667777777777777777776664 33 3456666777777777777777777766543 33 4556666
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChh
Q 040365 285 VADLLGRAGKLQEAYEFISNMH--AGPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWK 362 (514)
Q Consensus 285 li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 362 (514)
+...+...+++++|.+.+++.. .+.+...|..+...+...|++++|+..++++++.+|.++.+|..++.+|.+.|+++
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 6677777777777777776652 23456778888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhC
Q 040365 363 DAASLRVFMRNK 374 (514)
Q Consensus 363 ~a~~~~~~m~~~ 374 (514)
+|.+.+++..+.
T Consensus 159 ~A~~~~~~al~~ 170 (184)
T 3vtx_A 159 EAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 888888877654
No 63
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.40 E-value=6.9e-12 Score=124.27 Aligned_cols=266 Identities=15% Similarity=0.006 Sum_probs=154.8
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHhCCCCch----hHHHHHHHHHHHCCCHHHHHHHHccCCC---------CChhHHH
Q 040365 45 SSVLPIFADYVDVIKGKEIHGYAIRHGLDANV----CIGSSLINMYAKCARVEDSHRLFCLLPV---------KDAISWN 111 (514)
Q Consensus 45 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~f~~~~~---------~d~~~~~ 111 (514)
..+...+...|++++|...++.+++.+ +.+. .++..+...|...|++++|...|++..+ ....+|.
T Consensus 52 ~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 52 ALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 334445566667777777776666653 2222 3455566666666666666665554321 1223455
Q ss_pred HHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcC-CCCcHHHHHHHHHHHHhc
Q 040365 112 SIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLGKQLHGCIIRNG-FDDNMFIASSLLDMYAKC 190 (514)
Q Consensus 112 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~y~k~ 190 (514)
.+...|...|++++|+..|++...... +.+ .+....++..+...|...
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~~~~-------------------------------~~~~~~~~~~~~~~l~~~~~~~ 179 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLTLAR-------------------------------QLGDRLSEGRALYNLGNVYHAK 179 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH-------------------------------HHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHH-------------------------------HhhchHHHHHHHHHHHHHHHHc
Confidence 555555556666666555555433100 000 011223444445555555
Q ss_pred CC-----------------HHHHHHHHHhCC-------CC--ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCC-
Q 040365 191 GN-----------------IRLARCIFDKMD-------LH--DIVSWTAVIMGNALHGNAHDAISLFEQMEKDGV-KPN- 242 (514)
Q Consensus 191 g~-----------------~~~A~~~~~~m~-------~~--d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~- 242 (514)
|+ +++|.+.|++.. .+ ...+|..+...|...|++++|+..|++..+... .++
T Consensus 180 g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 259 (411)
T 4a1s_A 180 GKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDR 259 (411)
T ss_dssp HHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCc
Confidence 55 555555544432 11 123566666677777777777777776654210 011
Q ss_pred ---HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC----CHhHHHHHHHHHHhcCCHHHHHHHHHhCCC----CCC-
Q 040365 243 ---SVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAP----SFEHYAAVADLLGRAGKLQEAYEFISNMHA----GPT- 310 (514)
Q Consensus 243 ---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~p~- 310 (514)
..++..+...+...|++++|...++.......-.. ....+..+...|...|++++|.+.+++... .++
T Consensus 260 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 339 (411)
T 4a1s_A 260 AAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDR 339 (411)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh
Confidence 13566777777788888888887776654321111 246677788888888888888888876521 122
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 040365 311 ---ENVWLTLLSACRVHKNVELAGKVAEKIFMIDP 342 (514)
Q Consensus 311 ---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 342 (514)
..++..+...+...|++++|...+++++++.+
T Consensus 340 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 340 IGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 34677888889999999999999999988764
No 64
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.39 E-value=1.5e-10 Score=110.00 Aligned_cols=218 Identities=11% Similarity=0.091 Sum_probs=141.4
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-------ccCCh-------HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 040365 124 DEGLKFFRQMLIAKIKPRHVSFSSIMPACA-------HLTTL-------HLGKQLHGCIIRNGFDDNMFIASSLLDMYAK 189 (514)
Q Consensus 124 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k 189 (514)
++|+.+|++..... +-+...|......+. +.|++ ++|..++++.++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56667777766642 334445555554443 24664 6777777777763124455677777777777
Q ss_pred cCCHHHHHHHHHhCC--CC-Chh-HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-ccCCHHHHHH
Q 040365 190 CGNIRLARCIFDKMD--LH-DIV-SWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACS-HAGLIDKAWS 264 (514)
Q Consensus 190 ~g~~~~A~~~~~~m~--~~-d~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~~ 264 (514)
.|++++|.++|++.. .| +.. .|..+...+.+.|++++|..+|++..+.. +++...|........ ..|+.++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 777777777777764 22 333 67777777777788888888888777643 223334433332222 3578888888
Q ss_pred HHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhCCC----CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040365 265 YFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISNMHA----GP--TENVWLTLLSACRVHKNVELAGKVAEKIF 338 (514)
Q Consensus 265 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 338 (514)
+|+...+.. +-+...|..++..+.+.|++++|..+|++... .| ....|..++......|+.+.|..+++++.
T Consensus 191 ~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 887776542 12566777777777777888888887776532 33 35677777777777888888888888887
Q ss_pred hcCCCCc
Q 040365 339 MIDPNNM 345 (514)
Q Consensus 339 ~~~p~~~ 345 (514)
+..|++.
T Consensus 269 ~~~p~~~ 275 (308)
T 2ond_A 269 TAFREEY 275 (308)
T ss_dssp HHTTTTT
T ss_pred HHccccc
Confidence 7777654
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.39 E-value=9.5e-12 Score=118.92 Aligned_cols=98 Identities=14% Similarity=0.061 Sum_probs=54.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC----CHhHHHHHHHHHHhcCCHHHHHHHHHhCC----CCCC----HH
Q 040365 245 AFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAP----SFEHYAAVADLLGRAGKLQEAYEFISNMH----AGPT----EN 312 (514)
Q Consensus 245 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p~----~~ 312 (514)
++..+...+...|++++|..+++...+...-.+ ....+..+...|...|++++|.+.+++.. ..++ ..
T Consensus 225 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 304 (338)
T 3ro2_A 225 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 304 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 444445555555555555555554432211011 13455556666666666666666665542 0111 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 040365 313 VWLTLLSACRVHKNVELAGKVAEKIFMIDP 342 (514)
Q Consensus 313 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 342 (514)
++..+...+...|++++|...+++++++.+
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 305 ACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 566777777788888888888888777654
No 66
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.37 E-value=2.6e-12 Score=121.82 Aligned_cols=243 Identities=8% Similarity=0.020 Sum_probs=127.0
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc------C
Q 040365 106 DAISWNSIIAGCVQNGLFDEGLKFFRQMLIA-------KIKPRHVSFSSIMPACAHLTTLHLGKQLHGCIIRN------G 172 (514)
Q Consensus 106 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~ 172 (514)
+..+|..+...+...|++++|+.+|+++.+. ..+.....+..+...+...|++++|...+..+++. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3456888888888999999999999888762 22333455666777777778888888777777654 2
Q ss_pred C-CCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCC----------C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHc---
Q 040365 173 F-DDNMFIASSLLDMYAKCGNIRLARCIFDKMDL----------H-DIVSWTAVIMGNALHGNAHDAISLFEQMEKD--- 237 (514)
Q Consensus 173 ~-~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~----------~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--- 237 (514)
. +....++..+...|...|++++|.+.|++... + ...+|..+...|...|++++|+++|+++...
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 22345556666666666666666666655431 1 1234555555555555555555555555442
Q ss_pred ---CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhc------CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 040365 238 ---GVKPN-SVAFVAVLTACSHAGLIDKAWSYFNSMTKDY------GIAPSFEHYAAVADLLGRAGKLQEAYEFISNMHA 307 (514)
Q Consensus 238 ---g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 307 (514)
+..|+ ..++..+...+...|++++|..+++.+.+.. ...+.......
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~----------------------- 242 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM----------------------- 242 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH-----------------------
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH-----------------------
Confidence 11222 1234444555555555555555555543210 00000000000
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHh
Q 040365 308 GPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRN 373 (514)
Q Consensus 308 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 373 (514)
....+..+...+...+.+.++...++......|.++.++..++.+|.+.|++++|.+.+++..+
T Consensus 243 --~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 243 --HAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --HHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred --HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 0111222223334444555555566666655666666777777777777777777777776543
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.36 E-value=5e-11 Score=103.84 Aligned_cols=167 Identities=12% Similarity=-0.000 Sum_probs=137.9
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 040365 175 DNMFIASSLLDMYAKCGNIRLARCIFDKMD---LHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLT 251 (514)
Q Consensus 175 ~~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 251 (514)
.+..+|..|...|.+.|++++|.+.|++.. +.+..+|..+...|.+.|++++|+..+.+..... +-+...+..+..
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 356778888888999999999999988864 4467788889999999999999999999888753 224566777777
Q ss_pred HHHccCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHH
Q 040365 252 ACSHAGLIDKAWSYFNSMTKDYGIAP-SFEHYAAVADLLGRAGKLQEAYEFISNMH--AGPTENVWLTLLSACRVHKNVE 328 (514)
Q Consensus 252 a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~ 328 (514)
.+...++++.+...+....+. .| +...+..+...|.+.|++++|.+.|++.. .+.+..+|..+..++...|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL---NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 888899999999999988653 44 57788889999999999999999998763 2346788999999999999999
Q ss_pred HHHHHHHHHHhcCCCCc
Q 040365 329 LAGKVAEKIFMIDPNNM 345 (514)
Q Consensus 329 ~a~~~~~~~~~~~p~~~ 345 (514)
+|+..++++++++|+++
T Consensus 159 ~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 159 EAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHhCCccCH
Confidence 99999999999998753
No 68
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.34 E-value=6e-12 Score=119.26 Aligned_cols=242 Identities=11% Similarity=0.022 Sum_probs=168.4
Q ss_pred CCchhHHHHHHHHHHHCCCHHHHHHHHccCCC--------C---ChhHHHHHHHHHHHCCChhHHHHHHHHHHHC-----
Q 040365 73 DANVCIGSSLINMYAKCARVEDSHRLFCLLPV--------K---DAISWNSIIAGCVQNGLFDEGLKFFRQMLIA----- 136 (514)
Q Consensus 73 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--------~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----- 136 (514)
+.+..++..+...|...|++++|..+|++..+ . ...++..+...|...|++++|+..|++....
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 33456788899999999999999999988653 1 3456888999999999999999999998764
Q ss_pred -CC-CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc------CC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCC--
Q 040365 137 -KI-KPRHVSFSSIMPACAHLTTLHLGKQLHGCIIRN------GF-DDNMFIASSLLDMYAKCGNIRLARCIFDKMDL-- 205 (514)
Q Consensus 137 -g~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~-- 205 (514)
+- +....++..+...+...|++++|...+..+++. +. +....++..+...|.+.|++++|.+.|++...
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 22 234567788888999999999999999998875 22 23456788899999999999999999988742
Q ss_pred -----C----ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcC-------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHh
Q 040365 206 -----H----DIVSWTAVIMGNALHGNAHDAISLFEQMEKDG-------VKPNSVAFVAVLTACSHAGLIDKAWSYFNSM 269 (514)
Q Consensus 206 -----~----d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-------~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 269 (514)
+ ...++..+...|...|++++|+..|+++.+.. ..|.......
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~--------------------- 242 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM--------------------- 242 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH---------------------
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH---------------------
Confidence 1 23578889999999999999999999988641 1111100000
Q ss_pred HHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhCCC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 040365 270 TKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISNMHA-G-PTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPN 343 (514)
Q Consensus 270 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 343 (514)
....+..+...+...+.+.+|...++.... . .+..+|..+..++...|++++|...+++++++.|.
T Consensus 243 --------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 243 --------HAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp --------HHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred --------HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 111222233334445555566666655532 2 23466788888888888888888888888877653
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.33 E-value=4.1e-11 Score=117.74 Aligned_cols=195 Identities=12% Similarity=0.060 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhCC-----CC-----ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCC----
Q 040365 178 FIASSLLDMYAKCGNIRLARCIFDKMD-----LH-----DIVSWTAVIMGNALHGNAHDAISLFEQMEKDGV-KPN---- 242 (514)
Q Consensus 178 ~~~~~li~~y~k~g~~~~A~~~~~~m~-----~~-----d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~---- 242 (514)
.++..+...|...|++++|...+++.. .+ ...+++.+...|...|++++|++.|++..+... .++
T Consensus 144 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 223 (383)
T 3ulq_A 144 EFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLM 223 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHH
Confidence 344444555555555555544444432 01 123455555556666666666666655543200 011
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHhHHhc---CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhCC----CCCCH---
Q 040365 243 SVAFVAVLTACSHAGLIDKAWSYFNSMTKDY---GIAP-SFEHYAAVADLLGRAGKLQEAYEFISNMH----AGPTE--- 311 (514)
Q Consensus 243 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p~~--- 311 (514)
..++..+...+...|++++|...|+...+-. +..| ....+..+...|.+.|++++|.+.+++.. ..++.
T Consensus 224 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 303 (383)
T 3ulq_A 224 GRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYL 303 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 1345555666666666666666666554310 1112 24455566666666666666666665532 00111
Q ss_pred HHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHh
Q 040365 312 NVWLTLLSACRVHKN---VELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRN 373 (514)
Q Consensus 312 ~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 373 (514)
..+..+...+...|+ .+.|...+++. ...|.....+..++..|...|++++|...+++..+
T Consensus 304 ~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 304 SEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 223445555666666 55555555544 11233344666777777777777777777776643
No 70
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.33 E-value=3e-10 Score=107.95 Aligned_cols=162 Identities=10% Similarity=0.018 Sum_probs=88.9
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 040365 108 ISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHV--SFSSIMPACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLD 185 (514)
Q Consensus 108 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 185 (514)
..|..++..+.+.|++++|..+|++..+. .|+.. .|..+...+.+.|++++|..+++..++.. +.+..+|.....
T Consensus 100 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~ 176 (308)
T 2ond_A 100 LLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAAL 176 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 34555555555555555555555555442 33221 44555555555555555555555555443 222333333322
Q ss_pred HHH-hcCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHccCC
Q 040365 186 MYA-KCGNIRLARCIFDKMD---LHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDG-VKPN--SVAFVAVLTACSHAGL 258 (514)
Q Consensus 186 ~y~-k~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~--~~t~~~ll~a~~~~g~ 258 (514)
... ..|+.++|.++|++.. ..+...|..++..+.+.|+.++|..+|++..... +.|+ ...|..++......|+
T Consensus 177 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~ 256 (308)
T 2ond_A 177 MEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD 256 (308)
T ss_dssp HHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC
Confidence 221 2466666666666553 2355666666666667777777777777776642 3443 3456666666666777
Q ss_pred HHHHHHHHHHhHHh
Q 040365 259 IDKAWSYFNSMTKD 272 (514)
Q Consensus 259 ~~~a~~~~~~m~~~ 272 (514)
.++|..+++++.+.
T Consensus 257 ~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 257 LASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777776544
No 71
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.32 E-value=1.3e-10 Score=114.13 Aligned_cols=229 Identities=13% Similarity=0.063 Sum_probs=168.3
Q ss_pred HHHHHHHCCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcC--C----CCcHHHHH
Q 040365 113 IIAGCVQNGLFDEGLKFFRQMLIA----KIKP-RHVSFSSIMPACAHLTTLHLGKQLHGCIIRNG--F----DDNMFIAS 181 (514)
Q Consensus 113 li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~----~~~~~~~~ 181 (514)
....+...|++++|+..|++..+. +-.+ ...++..+...+...|+++.|...+.+.++.- . +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445667778888888888887653 1111 23456677777788888888888887776531 1 11245677
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC-----CCC----hhHHHHHHHHHHhCCChHHHHHHHHHHHHc----CCCCC-HHHHH
Q 040365 182 SLLDMYAKCGNIRLARCIFDKMD-----LHD----IVSWTAVIMGNALHGNAHDAISLFEQMEKD----GVKPN-SVAFV 247 (514)
Q Consensus 182 ~li~~y~k~g~~~~A~~~~~~m~-----~~d----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~ 247 (514)
.+...|...|++++|.+.|++.. .++ ..+++.+...|...|++++|+..|++..+. +..|+ ..++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 78888999999999988887764 112 247888889999999999999999988762 33243 46788
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHHhcCC--CC-CHhHHHHHHHHHHhcCC---HHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 040365 248 AVLTACSHAGLIDKAWSYFNSMTKDYGI--AP-SFEHYAAVADLLGRAGK---LQEAYEFISNMHAGPT-ENVWLTLLSA 320 (514)
Q Consensus 248 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p-~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~-~~~~~~ll~~ 320 (514)
.+...+...|++++|..+++...+...- .| ....+..+...|...|+ +++|..++++....|+ ..++..|...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 8889999999999999999887543211 12 23345678888889999 9999999999864443 3467788899
Q ss_pred HHhcCCHHHHHHHHHHHHhcC
Q 040365 321 CRVHKNVELAGKVAEKIFMID 341 (514)
Q Consensus 321 ~~~~~~~~~a~~~~~~~~~~~ 341 (514)
+...|++++|...+++++++.
T Consensus 349 y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHH
Confidence 999999999999999988754
No 72
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.29 E-value=1.5e-10 Score=122.14 Aligned_cols=162 Identities=15% Similarity=0.175 Sum_probs=130.8
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CHhHHHH
Q 040365 207 DIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPN-SVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAP-SFEHYAA 284 (514)
Q Consensus 207 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ 284 (514)
+..+|+.+...|.+.|++++|++.|++..+. .|+ ...+..+..++.+.|++++|+..|++..+. .| +...|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHH
Confidence 3456777777778888888888888887774 454 567777888888888888888888877643 55 4677888
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChh
Q 040365 285 VADLLGRAGKLQEAYEFISNMH-AG-PTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWK 362 (514)
Q Consensus 285 li~~~~~~g~~~~A~~~~~~m~-~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 362 (514)
+..+|.+.|++++|.+.|++.. .. .+...|..|..++...|++++|+..++++++++|+++..|..|+.+|...|+|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 8888888888888888887753 23 357889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 040365 363 DAASLRVFMRN 373 (514)
Q Consensus 363 ~a~~~~~~m~~ 373 (514)
+|.+.+++..+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988887653
No 73
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.29 E-value=6.4e-09 Score=108.47 Aligned_cols=369 Identities=6% Similarity=-0.060 Sum_probs=226.5
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCC---hHHHHHHHHHHHHhC-CCCchhHH
Q 040365 4 SDLVSWNTVIVGLARNGLYEEALNIVRQMGNVNLKPDSFTLSSVLPIFADYVD---VIKGKEIHGYAIRHG-LDANVCIG 79 (514)
Q Consensus 4 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~---~~~a~~~~~~~~~~g-~~~~~~~~ 79 (514)
.|..+|..+|..+.+.+.++.+..+|+.+... .+.....|..-+..-.+.++ ++.+.++|+..+... .+|++..|
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 47889999999999999999999999999875 34555667777777777788 899999999888764 13777788
Q ss_pred HHHHHHHHHCCCH--------HHHHHHHccCC------CC-ChhHHHHHHHHHH---------HCCChhHHHHHHHHHHH
Q 040365 80 SSLINMYAKCARV--------EDSHRLFCLLP------VK-DAISWNSIIAGCV---------QNGLFDEGLKFFRQMLI 135 (514)
Q Consensus 80 ~~li~~~~~~g~~--------~~A~~~f~~~~------~~-d~~~~~~li~~~~---------~~g~~~~A~~l~~~m~~ 135 (514)
...+....+.+++ +...++|+... .+ +...|...+.-.. .+++.+.+..+|.+...
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 8777766555543 23446676521 22 3456777765433 23345667777777764
Q ss_pred CCCCCCHHHHH---HHHHHHhc----------cCChH-------------------------------------------
Q 040365 136 AKIKPRHVSFS---SIMPACAH----------LTTLH------------------------------------------- 159 (514)
Q Consensus 136 ~g~~p~~~t~~---~ll~~~~~----------~~~~~------------------------------------------- 159 (514)
.....-..+|. ........ ...++
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql 302 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQL 302 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHH
T ss_pred CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHH
Confidence 21111111211 11100000 00011
Q ss_pred ------------------------HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHH-HHHHhCC---CCChhHH
Q 040365 160 ------------------------LGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLAR-CIFDKMD---LHDIVSW 211 (514)
Q Consensus 160 ------------------------~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~-~~~~~m~---~~d~~~~ 211 (514)
.+..++++.+.. ++.+..+|-..+..+...|+.++|. ++|++.. ..+...|
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lw 381 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLA 381 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHH
Confidence 122233333332 1333444444555556667777775 7777654 3355567
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcC---------CCCC------------HHHHHHHHHHHHccCCHHHHHHHHHHhH
Q 040365 212 TAVIMGNALHGNAHDAISLFEQMEKDG---------VKPN------------SVAFVAVLTACSHAGLIDKAWSYFNSMT 270 (514)
Q Consensus 212 ~~li~~~~~~g~~~~A~~l~~~m~~~g---------~~p~------------~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 270 (514)
-..+...-+.|++++|.++|+++.... -.|+ ...|...+....+.|..+.|..+|....
T Consensus 382 l~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~ 461 (679)
T 4e6h_A 382 FSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCR 461 (679)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777777777888888888888876531 0132 2346666666667778888888888776
Q ss_pred HhcCCCCCHhHHHHHHHHHHhcC-CHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---C
Q 040365 271 KDYGIAPSFEHYAAVADLLGRAG-KLQEAYEFISNMH--AGPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPN---N 344 (514)
Q Consensus 271 ~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~---~ 344 (514)
+.. -.+....|...+.+-.+.| +.+.|.++|+... .+.+...|...+......|+.+.|..+|++++...|+ .
T Consensus 462 ~~~-~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~ 540 (679)
T 4e6h_A 462 RLK-KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLL 540 (679)
T ss_dssp HTG-GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHH
T ss_pred Hhc-CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHH
Confidence 531 1112334444444444444 4788888877653 2235666777777777778888888888888877663 3
Q ss_pred cchHHHHHHHHHHccChhHHHHHHHHHHhCC
Q 040365 345 MGAYVILSNTYAAARRWKDAASLRVFMRNKG 375 (514)
Q Consensus 345 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 375 (514)
...|...+..-.+.|+.+.+.++.+++.+.-
T Consensus 541 ~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 541 KMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4566677777777888888888888887654
No 74
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.27 E-value=4.6e-09 Score=102.50 Aligned_cols=260 Identities=13% Similarity=0.010 Sum_probs=163.5
Q ss_pred HHHHHHCCChhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhccCChHHHHHHHHHHHHcC--C-CC--cHHHHHHHH
Q 040365 114 IAGCVQNGLFDEGLKFFRQMLIAKIKPRHV----SFSSIMPACAHLTTLHLGKQLHGCIIRNG--F-DD--NMFIASSLL 184 (514)
Q Consensus 114 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~-~~--~~~~~~~li 184 (514)
...+...|++++|...+++........+.. .+..+...+...|+++.|.+.+.+..+.. . .+ .......+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 344556667777777766665543111211 33344455566677777777666655421 0 11 122345566
Q ss_pred HHHHhcCCHHHHHHHHHhCC-------C---C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC--C--CHHHHHHH
Q 040365 185 DMYAKCGNIRLARCIFDKMD-------L---H-DIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVK--P--NSVAFVAV 249 (514)
Q Consensus 185 ~~y~k~g~~~~A~~~~~~m~-------~---~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p--~~~t~~~l 249 (514)
..|...|++++|...+++.. . + ....+..+...+...|++++|...+++....... | ...++..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 67777788877777776653 1 1 1234556667778888888888888887653221 1 13456677
Q ss_pred HHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHH-----HHHHHHHhcCCHHHHHHHHHhCCCC-CC-----HHHHHHHH
Q 040365 250 LTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYA-----AVADLLGRAGKLQEAYEFISNMHAG-PT-----ENVWLTLL 318 (514)
Q Consensus 250 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~-p~-----~~~~~~ll 318 (514)
...+...|++++|...++.......-......+. ..+..+...|++++|...+++.... |. ...+..+.
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la 260 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 260 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHH
Confidence 7778888888888888887754321111111111 2334477889999999988876421 21 23566777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCC-----C-cchHHHHHHHHHHccChhHHHHHHHHHHh
Q 040365 319 SACRVHKNVELAGKVAEKIFMIDPN-----N-MGAYVILSNTYAAARRWKDAASLRVFMRN 373 (514)
Q Consensus 319 ~~~~~~~~~~~a~~~~~~~~~~~p~-----~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 373 (514)
..+...|++++|...++++....+. + ...+..+..+|...|++++|...+++...
T Consensus 261 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 261 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 8888899999999999888765321 1 23667788889999999999999887764
No 75
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.27 E-value=2.6e-10 Score=98.74 Aligned_cols=161 Identities=14% Similarity=0.013 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhCCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 040365 178 FIASSLLDMYAKCGNIRLARCIFDKMDL---HDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACS 254 (514)
Q Consensus 178 ~~~~~li~~y~k~g~~~~A~~~~~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 254 (514)
..+..+...|...|++++|.+.|+++.. .+...|..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 3445556666666666666666666542 234455555555555566666655555555431 122334444444444
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 040365 255 HAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISNMHAGPTENVWLTLLSACRVHKNVELAGKVA 334 (514)
Q Consensus 255 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 334 (514)
..|++++|..+++.+.+. .+.+...|..+...+...|++++|...+
T Consensus 88 ~~~~~~~A~~~~~~~~~~----------------------------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 133 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA----------------------------------NPINFNVRFRLGVALDNLGRFDEAIDSF 133 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH----------------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc----------------------------------CcHhHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 444444444444444321 1234556666666666777777777777
Q ss_pred HHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHh
Q 040365 335 EKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRN 373 (514)
Q Consensus 335 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 373 (514)
+++.+..|.++..+..++.+|...|++++|.+.++...+
T Consensus 134 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 134 KIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777777777777777777777777777777776654
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.25 E-value=4e-10 Score=110.46 Aligned_cols=220 Identities=10% Similarity=0.014 Sum_probs=122.0
Q ss_pred HhccCChHHHHHHHHHHHHcC--CC---CcHHHHHHHHHHHHhcCCHHHHHHHHHhCC-----CC-----ChhHHHHHHH
Q 040365 152 CAHLTTLHLGKQLHGCIIRNG--FD---DNMFIASSLLDMYAKCGNIRLARCIFDKMD-----LH-----DIVSWTAVIM 216 (514)
Q Consensus 152 ~~~~~~~~~a~~~~~~~~~~~--~~---~~~~~~~~li~~y~k~g~~~~A~~~~~~m~-----~~-----d~~~~~~li~ 216 (514)
+...|++++|...+.+..+.. .. ....++..+...|...|+++.|...+++.. .+ ...+++.+..
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 345566666666665555431 01 123345556666666666666655555432 11 1235566666
Q ss_pred HHHhCCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcC--CCC-CHhHHHHHHHH
Q 040365 217 GNALHGNAHDAISLFEQMEKD----GVKP-NSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYG--IAP-SFEHYAAVADL 288 (514)
Q Consensus 217 ~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~~p-~~~~~~~li~~ 288 (514)
.|...|++++|++.|++..+. +-.+ ...++..+...+...|++++|...|+....-.. ..| ....+..+...
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 270 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWT 270 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHH
Confidence 666777777777766665542 1111 123455666667777777777777766654110 122 24556666677
Q ss_pred HHhcCCHHHHHHHHHhCC----C--CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHc
Q 040365 289 LGRAGKLQEAYEFISNMH----A--GPT-ENVWLTLLSACRVHKN---VELAGKVAEKIFMIDPNNMGAYVILSNTYAAA 358 (514)
Q Consensus 289 ~~~~g~~~~A~~~~~~m~----~--~p~-~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 358 (514)
|.+.|++++|.+.+++.. . .|. ...+..+...+...++ +++|...+++. ...|.....+..++..|...
T Consensus 271 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~ 349 (378)
T 3q15_A 271 LCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESS 349 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHC
Confidence 777777777777776541 1 122 2334444455555666 55555555541 11133344566777778888
Q ss_pred cChhHHHHHHHHHH
Q 040365 359 RRWKDAASLRVFMR 372 (514)
Q Consensus 359 g~~~~a~~~~~~m~ 372 (514)
|++++|.+.+++..
T Consensus 350 g~~~~A~~~~~~al 363 (378)
T 3q15_A 350 CHFEQAAAFYRKVL 363 (378)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 88888877777664
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.24 E-value=6.2e-10 Score=96.31 Aligned_cols=157 Identities=14% Similarity=0.038 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCC---CCChhHHHHHHHHH
Q 040365 142 HVSFSSIMPACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMD---LHDIVSWTAVIMGN 218 (514)
Q Consensus 142 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~d~~~~~~li~~~ 218 (514)
...+..+...+...|++++|...+..+.+.. +.+..++..+...|...|++++|...|+++. ..+...|..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3456677788899999999999999887654 5578888999999999999999999999875 44678899999999
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHH
Q 040365 219 ALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEA 298 (514)
Q Consensus 219 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 298 (514)
...|++++|.+.|+++.... +.+...+..+...+...|++++|..+++.+.+.. +.+...+..+...+...|++++|
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR--PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998863 3456677777778888888888888888775431 11233344444444444444444
Q ss_pred HHHH
Q 040365 299 YEFI 302 (514)
Q Consensus 299 ~~~~ 302 (514)
.+.+
T Consensus 164 ~~~~ 167 (186)
T 3as5_A 164 LPHF 167 (186)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 78
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.24 E-value=1.7e-10 Score=116.60 Aligned_cols=209 Identities=8% Similarity=-0.066 Sum_probs=176.0
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHCCCH-HHHHHHHccCC---CCChhHHHHHHHHHHHCCChhHHHHHHHH
Q 040365 57 VIKGKEIHGYAIRHGLDANVCIGSSLINMYAKCARV-EDSHRLFCLLP---VKDAISWNSIIAGCVQNGLFDEGLKFFRQ 132 (514)
Q Consensus 57 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~ 132 (514)
++++.+.+....+.. +.+...+..+...|...|++ ++|.+.|++.. ..+..+|..+...|.+.|++++|++.|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 566777777655443 45777888888899999999 99999988764 34577899999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHhcc---------CChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc--------CCHHH
Q 040365 133 MLIAKIKPRHVSFSSIMPACAHL---------TTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKC--------GNIRL 195 (514)
Q Consensus 133 m~~~g~~p~~~t~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~--------g~~~~ 195 (514)
..+. .|+...+..+..++... |++++|.+.+.++++.. +.+...+..+..+|... |++++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 8875 57778888888899998 99999999999999875 56788889999999998 99999
Q ss_pred HHHHHHhCC---C---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHH
Q 040365 196 ARCIFDKMD---L---HDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKP-NSVAFVAVLTACSHAGLIDKAWSYFNS 268 (514)
Q Consensus 196 A~~~~~~m~---~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~ 268 (514)
|.+.|++.. . .+...|..+...|...|++++|++.|++..+. .| +...+..+..++...|++++|...+..
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL--DPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999875 3 47788999999999999999999999999885 34 456788888899999999999998887
Q ss_pred hHH
Q 040365 269 MTK 271 (514)
Q Consensus 269 m~~ 271 (514)
+..
T Consensus 318 ~~~ 320 (474)
T 4abn_A 318 TKP 320 (474)
T ss_dssp CCH
T ss_pred ccC
Confidence 743
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.18 E-value=7.7e-09 Score=101.19 Aligned_cols=228 Identities=9% Similarity=0.010 Sum_probs=161.0
Q ss_pred HHHHHHHCCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHcC--C---C-CcHHHHH
Q 040365 113 IIAGCVQNGLFDEGLKFFRQMLIAKI-KPR----HVSFSSIMPACAHLTTLHLGKQLHGCIIRNG--F---D-DNMFIAS 181 (514)
Q Consensus 113 li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~---~-~~~~~~~ 181 (514)
....+...|++++|+..|++...... .++ ..++..+..++...|+++.|...+.+.++.. . . ....+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34455677888888888877754311 122 3355666777777888888887777766531 1 1 1245667
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCC-----CC----hhHHHHHHHHHHhCCChHHHHHHHHHHHHc----CCCCCHHHHHH
Q 040365 182 SLLDMYAKCGNIRLARCIFDKMDL-----HD----IVSWTAVIMGNALHGNAHDAISLFEQMEKD----GVKPNSVAFVA 248 (514)
Q Consensus 182 ~li~~y~k~g~~~~A~~~~~~m~~-----~d----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~~t~~~ 248 (514)
.+...|...|++++|.+.|++... ++ ..+++.+...|...|++++|+..|++.... +.+....++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 788888888888888888876541 12 246777888888999999999999888761 22223567788
Q ss_pred HHHHHHccCCHHHHHHHHHHhHHhcCCC--C-CHhHHHHHHHHHHhcCC---HHHHHHHHHhCCCCCCH-HHHHHHHHHH
Q 040365 249 VLTACSHAGLIDKAWSYFNSMTKDYGIA--P-SFEHYAAVADLLGRAGK---LQEAYEFISNMHAGPTE-NVWLTLLSAC 321 (514)
Q Consensus 249 ll~a~~~~g~~~~a~~~~~~m~~~~~~~--p-~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~~-~~~~~ll~~~ 321 (514)
+...+.+.|++++|..+++...+...-. | ....+..+...+...|+ +.+|..++++....|+. ..+..+...|
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y 346 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVF 346 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Confidence 8889999999999999999886643321 2 23456666777778888 88999999886544433 4567788899
Q ss_pred HhcCCHHHHHHHHHHHHhc
Q 040365 322 RVHKNVELAGKVAEKIFMI 340 (514)
Q Consensus 322 ~~~~~~~~a~~~~~~~~~~ 340 (514)
...|+++.|...++++.+.
T Consensus 347 ~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 347 ESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 9999999999999987654
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.18 E-value=1.3e-08 Score=99.22 Aligned_cols=258 Identities=7% Similarity=-0.058 Sum_probs=142.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCChh----hHHHHHHHHhCCCChHHHHHHHHHHHHhCC-CCc----hhHHHHH
Q 040365 12 VIVGLARNGLYEEALNIVRQMGNVNLKPDSF----TLSSVLPIFADYVDVIKGKEIHGYAIRHGL-DAN----VCIGSSL 82 (514)
Q Consensus 12 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~----~~~~~~l 82 (514)
....+...|++++|+..+++........+.. .+..+...+...|++++|.+.+...++..- ..+ ..++..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3445667888888888888877653222222 344455566677888888888887765421 111 1234556
Q ss_pred HHHHHHCCCHHHHHHHHccCC-------C---C-ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCC--C--CHHHHHH
Q 040365 83 INMYAKCARVEDSHRLFCLLP-------V---K-DAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIK--P--RHVSFSS 147 (514)
Q Consensus 83 i~~~~~~g~~~~A~~~f~~~~-------~---~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p--~~~t~~~ 147 (514)
...|...|++++|...+++.. . + ...++..+...+...|++++|...+++....... + ...++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 667777788777777766542 1 1 1234555666777777777777777776543211 1 1234555
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCc--HHHH-H---HHHHHHHhcCCHHHHHHHHHhCCCCC-------hhHHHHH
Q 040365 148 IMPACAHLTTLHLGKQLHGCIIRNGFDDN--MFIA-S---SLLDMYAKCGNIRLARCIFDKMDLHD-------IVSWTAV 214 (514)
Q Consensus 148 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~-~---~li~~y~k~g~~~~A~~~~~~m~~~d-------~~~~~~l 214 (514)
+...+...|++++|...++...+..-.++ .... . .++..+...|++++|...+++...++ ...+..+
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 66666677777777777776654311111 1111 1 23334566777777777776665321 1134455
Q ss_pred HHHHHhCCChHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHh
Q 040365 215 IMGNALHGNAHDAISLFEQMEKD----GVKPNS-VAFVAVLTACSHAGLIDKAWSYFNSM 269 (514)
Q Consensus 215 i~~~~~~g~~~~A~~l~~~m~~~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m 269 (514)
...+...|++++|...+++.... |..++. ..+..+..++...|+.++|...++..
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a 319 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 319 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 55566666666666666655431 111111 13333344444555555555555444
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.18 E-value=1.3e-09 Score=98.38 Aligned_cols=188 Identities=13% Similarity=0.014 Sum_probs=124.5
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHhCC---C-CChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 040365 175 DNMFIASSLLDMYAKCGNIRLARCIFDKMD---L-HDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPN-SVAFVAV 249 (514)
Q Consensus 175 ~~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~-~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~l 249 (514)
.|+..+..+...|.+.|++++|...|++.. + ++...|..+..++...|++++|+..|++..+. .|+ ...+..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHH
Confidence 345666677777778888888888777654 2 56666666777777788888888888877764 444 3566777
Q ss_pred HHHHHccCCHHHHHHHHHHhHHhcCCCC-CH-------hHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC---HHHHHHH
Q 040365 250 LTACSHAGLIDKAWSYFNSMTKDYGIAP-SF-------EHYAAVADLLGRAGKLQEAYEFISNMH-AGPT---ENVWLTL 317 (514)
Q Consensus 250 l~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~---~~~~~~l 317 (514)
...+...|++++|...|+...+. .| +. ..|..+...+...|++++|.+.+++.. ..|+ ...|..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l 159 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHH
Confidence 77777788888888888777654 33 23 446666677777777777777777653 3454 3456666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHhC
Q 040365 318 LSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRNK 374 (514)
Q Consensus 318 l~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 374 (514)
..++.. .+...++++..+.+.+...|..+. ....+.+++|...+++..+.
T Consensus 160 ~~~~~~-----~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 160 GVLFYN-----NGADVLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHH-----HHHHHHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 666543 344455666666655544443332 34456679999999988764
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.18 E-value=2e-09 Score=97.18 Aligned_cols=203 Identities=10% Similarity=0.043 Sum_probs=158.9
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCC---CCChhHHHHHHH
Q 040365 140 PRHVSFSSIMPACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMD---LHDIVSWTAVIM 216 (514)
Q Consensus 140 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~d~~~~~~li~ 216 (514)
.|+..+......+...|++++|...+...++...+++...+..+...|.+.|++++|.+.|++.. +.+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 45678888888999999999999999999998743777777779999999999999999999875 345678999999
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCC-H-------HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC---HhHHHHH
Q 040365 217 GNALHGNAHDAISLFEQMEKDGVKPN-S-------VAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPS---FEHYAAV 285 (514)
Q Consensus 217 ~~~~~g~~~~A~~l~~~m~~~g~~p~-~-------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~l 285 (514)
.|...|++++|+..|++..+. .|+ . ..|..+...+...|++++|...|+... .+.|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHHHHH
Confidence 999999999999999999885 344 3 457777888899999999999999886 44665 5677777
Q ss_pred HHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 040365 286 ADLLGRAGKLQEAYEFISNMH--AGPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNT 354 (514)
Q Consensus 286 i~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 354 (514)
...|...|+. +++++. ...+...+..+. ....+.+++|...++++++++|+++.+...+..+
T Consensus 160 ~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 160 GVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 7777665543 233321 123444444433 3455678999999999999999998777666554
No 83
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.10 E-value=5.5e-10 Score=103.82 Aligned_cols=32 Identities=16% Similarity=0.145 Sum_probs=22.3
Q ss_pred CCCcchHHHHHHHHHHccChhHHHHHHHHHHh
Q 040365 342 PNNMGAYVILSNTYAAARRWKDAASLRVFMRN 373 (514)
Q Consensus 342 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 373 (514)
|..+.++..++.+|...|++++|.+.+++..+
T Consensus 249 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 249 PTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455677777777777777777777776654
No 84
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.08 E-value=2.6e-07 Score=96.44 Aligned_cols=352 Identities=10% Similarity=0.008 Sum_probs=235.4
Q ss_pred hhHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHCCC---HHHHHHH
Q 040365 22 YEEALNIVRQMGNVNLKPDSFTLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSSLINMYAKCAR---VEDSHRL 98 (514)
Q Consensus 22 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~ 98 (514)
..+.+..|+..+..+ +-|..+|..++..+.+.+.++.+..+++.++.. ++.....|...+..-.+.|+ ++.+..+
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 344555566665554 468889999999999999999999999999988 57788899999999999999 9999999
Q ss_pred HccCC--C---CChhHHHHHHHHHHHCCCh--------hHHHHHHHHHHH-CCC-CCCH-HHHHHHHHHHh---------
Q 040365 99 FCLLP--V---KDAISWNSIIAGCVQNGLF--------DEGLKFFRQMLI-AKI-KPRH-VSFSSIMPACA--------- 153 (514)
Q Consensus 99 f~~~~--~---~d~~~~~~li~~~~~~g~~--------~~A~~l~~~m~~-~g~-~p~~-~t~~~ll~~~~--------- 153 (514)
|++.. . |++..|..-+.-..+.++. +...++|+.... .|. .|+. ..|...+....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 99865 3 7888898877765555543 234467776554 466 5653 45555554432
Q ss_pred ccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH-------------hcCCHHHHHHHHH-------------------
Q 040365 154 HLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYA-------------KCGNIRLARCIFD------------------- 201 (514)
Q Consensus 154 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~-------------k~g~~~~A~~~~~------------------- 201 (514)
..++++.++.+|..++......-..+|......-- ...+++.|+..+.
T Consensus 206 eq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~ 285 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQ 285 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTT
T ss_pred HHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccccc
Confidence 23346778888888775322211222211111000 0011222333322
Q ss_pred ------------------------------------------------hCC---CCChhHHHHHHHHHHhCCChHHHH-H
Q 040365 202 ------------------------------------------------KMD---LHDIVSWTAVIMGNALHGNAHDAI-S 229 (514)
Q Consensus 202 ------------------------------------------------~m~---~~d~~~~~~li~~~~~~g~~~~A~-~ 229 (514)
+.. ..+...|-..+.-+.+.|+.++|. +
T Consensus 286 ~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~ 365 (679)
T 4e6h_A 286 ATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITK 365 (679)
T ss_dssp CCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHH
T ss_pred chhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHH
Confidence 211 112234545555556678888886 9
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcC--------CCCC------------HhHHHHHHHHH
Q 040365 230 LFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYG--------IAPS------------FEHYAAVADLL 289 (514)
Q Consensus 230 l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--------~~p~------------~~~~~~li~~~ 289 (514)
+|++.... .+.+...+...+...-..|++++|..+|+.+..... -.|+ ...|...+...
T Consensus 366 il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~e 444 (679)
T 4e6h_A 366 YLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTM 444 (679)
T ss_dssp HHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHH
Confidence 99888764 333444566677778888999999999998875310 0132 34688888888
Q ss_pred HhcCCHHHHHHHHHhCCCC---CCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHH
Q 040365 290 GRAGKLQEAYEFISNMHAG---PTENVWLTLLSACRV-HKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAA 365 (514)
Q Consensus 290 ~~~g~~~~A~~~~~~m~~~---p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 365 (514)
.+.|.++.|..+|.+.... +...+|......-.. .++.+.|..+|+.+++..|+++..+...+......|+.+.|+
T Consensus 445 rR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR 524 (679)
T 4e6h_A 445 KRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVK 524 (679)
T ss_dssp HHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHH
Confidence 8999999999999987422 223344333222233 355899999999999999999888888899889999999999
Q ss_pred HHHHHHHhCCC
Q 040365 366 SLRVFMRNKGM 376 (514)
Q Consensus 366 ~~~~~m~~~g~ 376 (514)
.+|++......
T Consensus 525 ~lferal~~~~ 535 (679)
T 4e6h_A 525 SLFESSIDKIS 535 (679)
T ss_dssp HHHHHHTTTSS
T ss_pred HHHHHHHHhcC
Confidence 99998877654
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.04 E-value=8.9e-09 Score=95.51 Aligned_cols=199 Identities=9% Similarity=0.022 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHc------CC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCC---------
Q 040365 142 HVSFSSIMPACAHLTTLHLGKQLHGCIIRN------GF-DDNMFIASSLLDMYAKCGNIRLARCIFDKMDL--------- 205 (514)
Q Consensus 142 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~--------- 205 (514)
..++..+...+...|++++|...+..+++. +- +....++..+...|...|++++|.+.|++...
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 344555555566666666666666655543 11 22344566666667777777777666665531
Q ss_pred -C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhc---
Q 040365 206 -H-DIVSWTAVIMGNALHGNAHDAISLFEQMEKD------GVKPN-SVAFVAVLTACSHAGLIDKAWSYFNSMTKDY--- 273 (514)
Q Consensus 206 -~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~--- 273 (514)
| ...+|..+...|...|++++|+..|++.... +-.|+ ..++..+...+...|++++|..+++...+..
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 1 2346677777777788888888888777653 11332 3567777788888888888888888775431
Q ss_pred ---CCCC-CHhHHHHHHHHHHhc------CCHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 040365 274 ---GIAP-SFEHYAAVADLLGRA------GKLQEAYEFISNMHAG-P-TENVWLTLLSACRVHKNVELAGKVAEKIFMI 340 (514)
Q Consensus 274 ---~~~p-~~~~~~~li~~~~~~------g~~~~A~~~~~~m~~~-p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 340 (514)
...+ ....+..+...+... ..+.++...++..... | ...++..+...+...|++++|...++++++.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1122 223333333333332 2344455555544322 2 3457888899999999999999999988764
No 86
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.03 E-value=2e-08 Score=92.65 Aligned_cols=205 Identities=16% Similarity=0.043 Sum_probs=134.8
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHhCCC--C-C---hhHHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCC-HHHH
Q 040365 175 DNMFIASSLLDMYAKCGNIRLARCIFDKMDL--H-D---IVSWTAVIMGNALHGNAHDAISLFEQMEKDGV-KPN-SVAF 246 (514)
Q Consensus 175 ~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~--~-d---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~-~~t~ 246 (514)
.+...+-.+...+.+.|++++|...|+++.. | + ...+..+..+|.+.|++++|+..|++...... .|+ ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 3455556667777778888888888877652 2 3 45667777777778888888888887776421 122 2445
Q ss_pred HHHHHHHHc--------cCCHHHHHHHHHHhHHhcCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 040365 247 VAVLTACSH--------AGLIDKAWSYFNSMTKDYGIAPS-FEHYAAVADLLGRAGKLQEAYEFISNMHAGPTENVWLTL 317 (514)
Q Consensus 247 ~~ll~a~~~--------~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l 317 (514)
..+..++.. .|++++|...|+.+.+.+ |+ ......+.... .....+ ...+..+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~~~-------~~~~~~--------~~~~~~l 154 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY---PNHELVDDATQKIR-------ELRAKL--------ARKQYEA 154 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC---TTCTTHHHHHHHHH-------HHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC---cCchhHHHHHHHHH-------HHHHHH--------HHHHHHH
Confidence 556666666 777778887777776542 32 22221111111 000000 1124667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCc---chHHHHHHHHHHc----------cChhHHHHHHHHHHhCCCccCCcccE
Q 040365 318 LSACRVHKNVELAGKVAEKIFMIDPNNM---GAYVILSNTYAAA----------RRWKDAASLRVFMRNKGMKKTPACSW 384 (514)
Q Consensus 318 l~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~g~~~~~~~s~ 384 (514)
...+...|+++.|+..++++++..|+++ ..+..++.+|... |++++|...+++..+.. |
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~----p---- 226 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF----P---- 226 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC----T----
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC----C----
Confidence 8889999999999999999999998854 4788889999877 89999999999987643 1
Q ss_pred EEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHh
Q 040365 385 IEVKNKAYAFVAGDKSHPFYHRINEALKELLERMEQ 420 (514)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~ 420 (514)
.++...++...+.++...+.+
T Consensus 227 ---------------~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 ---------------DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp ---------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred ---------------CChHHHHHHHHHHHHHHHHHH
Confidence 134455666666666665543
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.03 E-value=7.7e-09 Score=97.33 Aligned_cols=216 Identities=10% Similarity=-0.067 Sum_probs=113.1
Q ss_pred CHHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCChHHHHHHH
Q 040365 91 RVEDSHRLFCLLPVKDAISWNSIIAGCVQNGLFDEGLKFFRQMLIA----KIKPR-HVSFSSIMPACAHLTTLHLGKQLH 165 (514)
Q Consensus 91 ~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~ 165 (514)
++++|...|+. ....|...|++++|+..|.+..+. |-+++ ..+|..+..++...|++++|...+
T Consensus 32 ~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQ-----------AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHH-----------HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 36777666554 366677778888887777766442 21111 345555556666666666666665
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCChhHHHHHHHHHHhC-CChHHHHHHHHHHHHcCC---CC
Q 040365 166 GCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMDLHDIVSWTAVIMGNALH-GNAHDAISLFEQMEKDGV---KP 241 (514)
Q Consensus 166 ~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~---~p 241 (514)
++.++.. .+.|+...+ ..+|+.+...|... |++++|+..|++..+... .+
T Consensus 101 ~~Al~l~---------------~~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~ 154 (292)
T 1qqe_A 101 ENAIQIF---------------THRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV 154 (292)
T ss_dssp HHHHHHH---------------HHTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHH---------------HHcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh
Confidence 5554321 111111111 22455555666664 666666666666554210 00
Q ss_pred -C-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCH-----hHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCH--
Q 040365 242 -N-SVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSF-----EHYAAVADLLGRAGKLQEAYEFISNMH-AGPTE-- 311 (514)
Q Consensus 242 -~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~-- 311 (514)
. ..++..+...+...|++++|+.+|+...+...-.+.. ..|..+..++...|++++|...+++.. ..|+.
T Consensus 155 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 234 (292)
T 1qqe_A 155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD 234 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 0 2345566666666677777777776665431111111 134555666666777777777766653 22321
Q ss_pred ----HHHHHHHHHHH--hcCCHHHHHHHHHHHHhcCCC
Q 040365 312 ----NVWLTLLSACR--VHKNVELAGKVAEKIFMIDPN 343 (514)
Q Consensus 312 ----~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~p~ 343 (514)
..+..++.++. ..+++++|...|+++..++|.
T Consensus 235 ~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~ 272 (292)
T 1qqe_A 235 SRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKW 272 (292)
T ss_dssp ---HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHH
Confidence 12334444443 345566666666666666554
No 88
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.03 E-value=5.8e-09 Score=110.04 Aligned_cols=159 Identities=13% Similarity=0.051 Sum_probs=88.5
Q ss_pred hhHHHHHHHHHHHCCCHHHHHHHHccCC---CCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040365 76 VCIGSSLINMYAKCARVEDSHRLFCLLP---VKDAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPAC 152 (514)
Q Consensus 76 ~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 152 (514)
..+++.|...|.+.|++++|.+.|++.. ..+..+|+.+...|.+.|++++|++.|++..+.. +-+...|..+..++
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~l 87 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3445555555555555555555555432 2234455555555555566666666555555432 12344555555555
Q ss_pred hccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHHHHH
Q 040365 153 AHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMD---LHDIVSWTAVIMGNALHGNAHDAIS 229 (514)
Q Consensus 153 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~ 229 (514)
...|++++|.+.+++.++.. +.+...++.|...|.+.|++++|.+.|++.. ..+...|..+...|...|++++|.+
T Consensus 88 ~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~ 166 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDE 166 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHH
Confidence 55666666666665555543 3345556666666666666666666666543 2345566666666666666666666
Q ss_pred HHHHHHH
Q 040365 230 LFEQMEK 236 (514)
Q Consensus 230 l~~~m~~ 236 (514)
.+++..+
T Consensus 167 ~~~kal~ 173 (723)
T 4gyw_A 167 RMKKLVS 173 (723)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665543
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.97 E-value=1.3e-07 Score=87.91 Aligned_cols=137 Identities=9% Similarity=0.103 Sum_probs=60.9
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCC-----CChhHHHHHHHHHHhCCChHHHHHHHHHHH
Q 040365 161 GKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMDL-----HDIVSWTAVIMGNALHGNAHDAISLFEQME 235 (514)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~-----~d~~~~~~li~~~~~~g~~~~A~~l~~~m~ 235 (514)
+...++..++.+ +++......+..+|...|++++|.+++.+... .+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334444444333 23333333455555555555555555555421 133444455555555555555555555555
Q ss_pred HcCCCC-----CHHHHHHHHHHHH--c--cCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 040365 236 KDGVKP-----NSVAFVAVLTACS--H--AGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFIS 303 (514)
Q Consensus 236 ~~g~~p-----~~~t~~~ll~a~~--~--~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 303 (514)
+. .| +..+...+..++. . .++.++|..+|+++... .|+...-..+..++.+.|++++|.+.++
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~ 235 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVE 235 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHH
Confidence 42 34 2334444443321 1 22555555555555322 2221222222224445555555555544
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.97 E-value=3.3e-08 Score=91.18 Aligned_cols=203 Identities=12% Similarity=0.042 Sum_probs=143.2
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHhCCC--C----ChhH
Q 040365 140 PRHVSFSSIMPACAHLTTLHLGKQLHGCIIRNGFDDN---MFIASSLLDMYAKCGNIRLARCIFDKMDL--H----DIVS 210 (514)
Q Consensus 140 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~y~k~g~~~~A~~~~~~m~~--~----d~~~ 210 (514)
.+...+-.....+.+.|++++|...+..+++.. +.+ ...+..+...|.+.|++++|...|++... | ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 455666677788899999999999999998864 333 67788899999999999999999998752 2 2346
Q ss_pred HHHHHHHHHh--------CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHH
Q 040365 211 WTAVIMGNAL--------HGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHY 282 (514)
Q Consensus 211 ~~~li~~~~~--------~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~ 282 (514)
+..+..++.. .|++++|+..|++.... .|+.... ..+...+...... ....+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~-------------~~a~~~~~~~~~~-----~~~~~ 151 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELV-------------DDATQKIRELRAK-----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTH-------------HHHHHHHHHHHHH-----HHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhH-------------HHHHHHHHHHHHH-----HHHHH
Confidence 7778888888 99999999999999885 3443111 1111111111110 11235
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCCcc-
Q 040365 283 AAVADLLGRAGKLQEAYEFISNMH-AGPT----ENVWLTLLSACRVH----------KNVELAGKVAEKIFMIDPNNMG- 346 (514)
Q Consensus 283 ~~li~~~~~~g~~~~A~~~~~~m~-~~p~----~~~~~~ll~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~- 346 (514)
..+...|.+.|++++|...|+++. ..|+ ...+..+..++... |++++|...++++++..|+++.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 567778888999999998888763 2233 45677777777765 8899999999999999998864
Q ss_pred --hHHHHHHHHHHccChhH
Q 040365 347 --AYVILSNTYAAARRWKD 363 (514)
Q Consensus 347 --~~~~l~~~~~~~g~~~~ 363 (514)
+...+...+...+++++
T Consensus 232 ~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 232 RTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 33344445544444433
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.95 E-value=7.1e-08 Score=89.72 Aligned_cols=142 Identities=14% Similarity=0.090 Sum_probs=76.0
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 040365 126 GLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLGKQLHGCIIRNGF-DDNMFIASSLLDMYAKCGNIRLARCIFDKMD 204 (514)
Q Consensus 126 A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~ 204 (514)
|+..|++....+ .++..++..+..++...|++++|.+++...+..+- .-+...+..++..|.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 555555555443 34444445555666666666666666666554442 1345555556666666666666666666654
Q ss_pred --CC-----ChhHHHHHHHHH--HhCC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhH
Q 040365 205 --LH-----DIVSWTAVIMGN--ALHG--NAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMT 270 (514)
Q Consensus 205 --~~-----d~~~~~~li~~~--~~~g--~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 270 (514)
.| +-.+...+..++ ...| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|...++.+.
T Consensus 164 ~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 22 123334444442 2222 566666666665443 3443333344445666666666666666543
No 92
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.95 E-value=2.8e-08 Score=80.51 Aligned_cols=129 Identities=17% Similarity=0.225 Sum_probs=70.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHH
Q 040365 210 SWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLL 289 (514)
Q Consensus 210 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 289 (514)
+|..+...+...|++++|+.+|+++.... +.+...+..+...+...|++++|..+++.+.+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----------------- 64 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL----------------- 64 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH-----------------
Confidence 34455555555555555655555555432 123344444444455555555555555544322
Q ss_pred HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHH
Q 040365 290 GRAGKLQEAYEFISNMHAGPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRV 369 (514)
Q Consensus 290 ~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 369 (514)
.+.+...|..+...+...|++++|...++++.+..|.+...+..++.+|...|++++|.+.++
T Consensus 65 -----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 127 (136)
T 2fo7_A 65 -----------------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127 (136)
T ss_dssp -----------------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred -----------------CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHH
Confidence 122344555555566666666666666666666666666666666666666666666666666
Q ss_pred HHHh
Q 040365 370 FMRN 373 (514)
Q Consensus 370 ~m~~ 373 (514)
++.+
T Consensus 128 ~~~~ 131 (136)
T 2fo7_A 128 KALE 131 (136)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 6544
No 93
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.94 E-value=9.2e-08 Score=89.89 Aligned_cols=197 Identities=11% Similarity=0.045 Sum_probs=130.7
Q ss_pred hHHHHHHHHHHHCCCHHHHHHHHccCCC-------C--ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 040365 77 CIGSSLINMYAKCARVEDSHRLFCLLPV-------K--DAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSS 147 (514)
Q Consensus 77 ~~~~~li~~~~~~g~~~~A~~~f~~~~~-------~--d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 147 (514)
..|+.....|...|++++|...|++..+ + ...+|+.+...|.+.|++++|+..|++..+.
T Consensus 38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l----------- 106 (292)
T 1qqe_A 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI----------- 106 (292)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----------
Confidence 3577788899999999999988876531 1 1457899999999999999999999987652
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc-CCHHHHHHHHHhCCC-----CC----hhHHHHHHHH
Q 040365 148 IMPACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKC-GNIRLARCIFDKMDL-----HD----IVSWTAVIMG 217 (514)
Q Consensus 148 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~-g~~~~A~~~~~~m~~-----~d----~~~~~~li~~ 217 (514)
+...|+...+ ..+++.+...|... |++++|...|++... .+ ..+|+.+...
T Consensus 107 ----~~~~g~~~~~---------------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~ 167 (292)
T 1qqe_A 107 ----FTHRGQFRRG---------------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADL 167 (292)
T ss_dssp ----HHHTTCHHHH---------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----HHHcCCHHHH---------------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 1112222211 12344455566664 666666666665431 11 2457777888
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCH------hHHHHH
Q 040365 218 NALHGNAHDAISLFEQMEKDGVKPNS------VAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSF------EHYAAV 285 (514)
Q Consensus 218 ~~~~g~~~~A~~l~~~m~~~g~~p~~------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~------~~~~~l 285 (514)
|.+.|++++|+..|++.......... ..|..+..++...|++++|...|+... .+.|+. ..+..+
T Consensus 168 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---~l~p~~~~~~~~~~l~~l 244 (292)
T 1qqe_A 168 KALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ---SEDPNFADSRESNFLKSL 244 (292)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG---CC---------HHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCCCCCcHHHHHHHHH
Confidence 88888888888888888774322221 156667777888889999988888775 344532 123445
Q ss_pred HHHHH--hcCCHHHHHHHHHhCC
Q 040365 286 ADLLG--RAGKLQEAYEFISNMH 306 (514)
Q Consensus 286 i~~~~--~~g~~~~A~~~~~~m~ 306 (514)
+..+. ..+++++|++.|+.+.
T Consensus 245 ~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 245 IDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHcCCHHHHHHHHHHhccCC
Confidence 55554 4577889999887764
No 94
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.93 E-value=5.1e-08 Score=78.99 Aligned_cols=123 Identities=18% Similarity=0.193 Sum_probs=93.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 040365 179 IASSLLDMYAKCGNIRLARCIFDKMD---LHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSH 255 (514)
Q Consensus 179 ~~~~li~~y~k~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 255 (514)
.+..+...|...|++++|.++|+++. ..+...|..+...+...|++++|..+|+++...+ +.+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 56778899999999999999999875 4567889999999999999999999999998863 3355677778888888
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHh
Q 040365 256 AGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISN 304 (514)
Q Consensus 256 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 304 (514)
.|++++|..+++.+.+.. +.+...+..+...+.+.|++++|.+.+++
T Consensus 82 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 128 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQK 128 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 888888888888876431 12344555555555555555555555544
No 95
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.91 E-value=1.4e-07 Score=84.96 Aligned_cols=179 Identities=12% Similarity=0.031 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhCCC--CC----hhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH----HHHH
Q 040365 178 FIASSLLDMYAKCGNIRLARCIFDKMDL--HD----IVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNS----VAFV 247 (514)
Q Consensus 178 ~~~~~li~~y~k~g~~~~A~~~~~~m~~--~d----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~ 247 (514)
..+..+...+.+.|++++|...|+++.. |+ ...+..+..+|.+.|++++|+..|++..+. .|+. ..+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHH
Confidence 3445566778888888888888887752 22 246777778888888888888888888774 2332 1333
Q ss_pred HHHHHHHc------------------cCCHHHHHHHHHHhHHhcCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 040365 248 AVLTACSH------------------AGLIDKAWSYFNSMTKDYGIAPS-FEHYAAVADLLGRAGKLQEAYEFISNMHAG 308 (514)
Q Consensus 248 ~ll~a~~~------------------~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 308 (514)
.+..++.. .|+.++|...|+.+.+. .|+ ...+.....+ +.+....
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l----~~~~~~~--------- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRL----VFLKDRL--------- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHH----HHHHHHH---------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHH----HHHHHHH---------
Confidence 33344432 35666666666666533 232 1111111100 0000000
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc---chHHHHHHHHHHccChhHHHHHHHHHHhCCC
Q 040365 309 PTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNM---GAYVILSNTYAAARRWKDAASLRVFMRNKGM 376 (514)
Q Consensus 309 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 376 (514)
......+...+...|+++.|+..++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+.
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 01123456678899999999999999999999876 5688999999999999999999999987654
No 96
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.90 E-value=6.8e-08 Score=90.57 Aligned_cols=173 Identities=11% Similarity=-0.077 Sum_probs=131.7
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhc
Q 040365 195 LARCIFDKMDLHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKP-NSVAFVAVLTACSHAGLIDKAWSYFNSMTKDY 273 (514)
Q Consensus 195 ~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 273 (514)
...+.+......+...+..+...+.+.|++++|+..|++.... .| +...+..+...+...|++++|...++.+...
T Consensus 104 ~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~- 180 (287)
T 3qou_A 104 AIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ- 180 (287)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-
Confidence 3444444444445566677777788888999999999888875 44 4567778888888999999999999887543
Q ss_pred CCCCCHhHHHHH-HHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--cchH
Q 040365 274 GIAPSFEHYAAV-ADLLGRAGKLQEAYEFISNMH--AGPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNN--MGAY 348 (514)
Q Consensus 274 ~~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~ 348 (514)
.|+....... ...+.+.++.++|.+.+++.. .+.+...+..|...+...|++++|...++++++.+|++ ...+
T Consensus 181 --~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~ 258 (287)
T 3qou_A 181 --DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTR 258 (287)
T ss_dssp --GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHH
T ss_pred --hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHH
Confidence 4554333222 233666777788888777653 23467889999999999999999999999999999987 7889
Q ss_pred HHHHHHHHHccChhHHHHHHHHHH
Q 040365 349 VILSNTYAAARRWKDAASLRVFMR 372 (514)
Q Consensus 349 ~~l~~~~~~~g~~~~a~~~~~~m~ 372 (514)
..|+.+|...|+.++|...+++-.
T Consensus 259 ~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 259 XTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHH
Confidence 999999999999999988887643
No 97
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.88 E-value=4.1e-09 Score=88.45 Aligned_cols=137 Identities=11% Similarity=0.031 Sum_probs=90.5
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHhcCCHH
Q 040365 219 ALHGNAHDAISLFEQMEKDGVKPN-SVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAP-SFEHYAAVADLLGRAGKLQ 296 (514)
Q Consensus 219 ~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~ 296 (514)
...|++++|+..+++.... .|+ ...+..+...|.+.|++++|+..|+...+. .| +...|..+..+|.+.|+++
T Consensus 8 ~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 8 RSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp CCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCchH
Confidence 3445556666666554431 222 233445566666667777777766666543 44 4666777777777777777
Q ss_pred HHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhcCCCCcchHHHHHHHHHHccC
Q 040365 297 EAYEFISNMH-AGP-TENVWLTLLSACRVHKNVELAGKV-AEKIFMIDPNNMGAYVILSNTYAAARR 360 (514)
Q Consensus 297 ~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 360 (514)
+|...|++.. ..| +..+|..+...+...|+.++|... ++++++++|+++.+|......+...|+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 7777776642 233 567788888888888888765554 588889999998888888887777664
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.86 E-value=9.2e-09 Score=108.71 Aligned_cols=167 Identities=12% Similarity=-0.015 Sum_probs=129.7
Q ss_pred HhcCCHHHHHHHHHhCC-----------CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHc
Q 040365 188 AKCGNIRLARCIFDKMD-----------LHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKP-NSVAFVAVLTACSH 255 (514)
Q Consensus 188 ~k~g~~~~A~~~~~~m~-----------~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~ 255 (514)
...|++++|.+.|++.. ..+...|..+...|.+.|++++|+..|++..+. .| +...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence 66788888888887764 345677888888888888888888888888874 34 45677778888888
Q ss_pred cCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 040365 256 AGLIDKAWSYFNSMTKDYGIAP-SFEHYAAVADLLGRAGKLQEAYEFISNMH--AGPTENVWLTLLSACRVHKNVELAGK 332 (514)
Q Consensus 256 ~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~ 332 (514)
.|++++|...|++..+. .| +...|..+..+|.+.|++++ .+.|++.. .+.+...|..+..++...|++++|..
T Consensus 480 ~g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 88899998888887653 45 56777888888888888888 88887753 23466788888888888899999999
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHHccC
Q 040365 333 VAEKIFMIDPNNMGAYVILSNTYAAARR 360 (514)
Q Consensus 333 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 360 (514)
.++++++++|++..++..++.+|...|+
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 9998888888888888888888866555
No 99
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.80 E-value=4.6e-07 Score=80.68 Aligned_cols=161 Identities=10% Similarity=-0.033 Sum_probs=108.5
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC----CHHHHHHHHHHhHHhcCCCCCHhHH
Q 040365 207 DIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAG----LIDKAWSYFNSMTKDYGIAPSFEHY 282 (514)
Q Consensus 207 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~m~~~~~~~p~~~~~ 282 (514)
+..++..+...|...+++++|+..|++..+.| +...+..+...|.. + +.++|..+|+...+. -++..+
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a~ 88 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSGE 88 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHHH
Confidence 45555555566666666666666666666554 34445555555555 4 677777777766432 245556
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCcchHHH
Q 040365 283 AAVADLLGR----AGKLQEAYEFISNMHAGPT----ENVWLTLLSACRV----HKNVELAGKVAEKIFMIDPNNMGAYVI 350 (514)
Q Consensus 283 ~~li~~~~~----~g~~~~A~~~~~~m~~~p~----~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~ 350 (514)
..|..+|.. .+++++|.++|++.....+ +..+..|...|.. .++.++|...+++..+. |.++..+..
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~ 167 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYW 167 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHH
Confidence 666666665 6777888887777643333 6777777777777 77888888888888877 556667888
Q ss_pred HHHHHHHc-c-----ChhHHHHHHHHHHhCCC
Q 040365 351 LSNTYAAA-R-----RWKDAASLRVFMRNKGM 376 (514)
Q Consensus 351 l~~~~~~~-g-----~~~~a~~~~~~m~~~g~ 376 (514)
|..+|... | ++++|...+++..+.|.
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 88888764 3 78888888888877664
No 100
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.79 E-value=9.1e-08 Score=99.04 Aligned_cols=158 Identities=12% Similarity=0.051 Sum_probs=124.6
Q ss_pred cCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHH
Q 040365 190 CGNIRLARCIFDKMD---LHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKP-NSVAFVAVLTACSHAGLIDKAWSY 265 (514)
Q Consensus 190 ~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~ 265 (514)
.|++++|.+.|++.. ..+...|..+...|.+.|++++|++.|++..+. .| +...+..+..++...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478999999999876 335788999999999999999999999999885 44 467888899999999999999999
Q ss_pred HHHhHHhcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHh
Q 040365 266 FNSMTKDYGIAP-SFEHYAAVADLLGRAGKLQEAYEFISNMH--AGPTENVWLTLLSACRVH---KNVELAGKVAEKIFM 339 (514)
Q Consensus 266 ~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~ 339 (514)
+++..+. .| +...+..+..+|.+.|++++|.+.+++.. .+.+...+..+...+... |+.++|...++++++
T Consensus 80 ~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9998764 45 57889999999999999999999998863 234678899999999999 999999999999999
Q ss_pred cCCCCcchHHHHH
Q 040365 340 IDPNNMGAYVILS 352 (514)
Q Consensus 340 ~~p~~~~~~~~l~ 352 (514)
.+|.+...|..+.
T Consensus 157 ~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 QGVGAVEPFAFLS 169 (568)
T ss_dssp HTCCCSCHHHHTT
T ss_pred cCCcccChHHHhC
Confidence 9999988887776
No 101
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.79 E-value=5.6e-06 Score=77.59 Aligned_cols=226 Identities=12% Similarity=0.028 Sum_probs=142.7
Q ss_pred HCCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccC--ChHHHHHHHHHHHHcCCCCcHHHHHHHHHHH----Hhc-
Q 040365 119 QNGLFDEGLKFFRQMLIAKIKPRHVS-FSSIMPACAHLT--TLHLGKQLHGCIIRNGFDDNMFIASSLLDMY----AKC- 190 (514)
Q Consensus 119 ~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y----~k~- 190 (514)
+....++|++++.++... .|+..| |+.--.++...+ +++++.++++.++... +-+..+|+.--..+ .+.
T Consensus 45 ~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 45 AEEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp TTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcc
Confidence 344456788888888774 454443 455555556666 7888888888887765 44445555433333 444
Q ss_pred --CCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC-----
Q 040365 191 --GNIRLARCIFDKMD---LHDIVSWTAVIMGNALHGNAH--DAISLFEQMEKDGVKPNSVAFVAVLTACSHAGL----- 258 (514)
Q Consensus 191 --g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~--~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~----- 258 (514)
++++++.++++.+. .++..+|+.-.-.+.+.|.++ ++++.+.++.+.... |...|..-.....+.+.
T Consensus 122 ~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHH
T ss_pred ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhh
Confidence 67788888887775 456677777777777777777 888888888875432 55566655555555555
Q ss_pred -HHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHhcCCHHH-HHHHHHhCCC-----CCCHHHHHHHHHHHHhcCCHHHH
Q 040365 259 -IDKAWSYFNSMTKDYGIAP-SFEHYAAVADLLGRAGKLQE-AYEFISNMHA-----GPTENVWLTLLSACRVHKNVELA 330 (514)
Q Consensus 259 -~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~-----~p~~~~~~~ll~~~~~~~~~~~a 330 (514)
+++++++++.+... .| |...|+-+-..+.+.|+..+ +.++.+++.. ..+...+..+...+.+.|+.++|
T Consensus 201 ~~~eEl~~~~~aI~~---~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A 277 (306)
T 3dra_A 201 TIDEELNYVKDKIVK---CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES 277 (306)
T ss_dssp HHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHh---CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 67777777766543 44 56666666666666666333 4445554421 23566667777777777777777
Q ss_pred HHHHHHHHh-cCCCCcchHHHH
Q 040365 331 GKVAEKIFM-IDPNNMGAYVIL 351 (514)
Q Consensus 331 ~~~~~~~~~-~~p~~~~~~~~l 351 (514)
.++++.+.+ .+|.....|...
T Consensus 278 ~~~~~~l~~~~Dpir~~yW~~~ 299 (306)
T 3dra_A 278 RTVYDLLKSKYNPIRSNFWDYQ 299 (306)
T ss_dssp HHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHHhccChHHHHHHHHH
Confidence 777777765 566655555433
No 102
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.78 E-value=2.1e-07 Score=98.29 Aligned_cols=188 Identities=11% Similarity=0.061 Sum_probs=145.1
Q ss_pred hccCChHHHHHHHHHHH--------HcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhC
Q 040365 153 AHLTTLHLGKQLHGCII--------RNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMD---LHDIVSWTAVIMGNALH 221 (514)
Q Consensus 153 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~ 221 (514)
...+++++|.+.+++.+ +.. +.+...+..+...|.+.|++++|.+.|++.. ..+...|..+...|.+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 67889999999999888 432 5566788888999999999999999998876 44778899999999999
Q ss_pred CChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHhcCCHHHHH
Q 040365 222 GNAHDAISLFEQMEKDGVKP-NSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAP-SFEHYAAVADLLGRAGKLQEAY 299 (514)
Q Consensus 222 g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~ 299 (514)
|++++|++.|++..+. .| +...+..+..++...|++++ ...|+...+. .| +...|..+..+|.+.|++++|.
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWST---NDGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh---CCchHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999885 44 45778888889999999999 9999988754 55 5788899999999999999999
Q ss_pred HHHHhCC-CCCC-HHHHHHHHHHHHhcCC-----HHHHHHHHHHHHhcCCCCcch
Q 040365 300 EFISNMH-AGPT-ENVWLTLLSACRVHKN-----VELAGKVAEKIFMIDPNNMGA 347 (514)
Q Consensus 300 ~~~~~m~-~~p~-~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~p~~~~~ 347 (514)
+.|++.. ..|+ ...|..+..++...++ .+...++.+.+..+.+.++..
T Consensus 555 ~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~ 609 (681)
T 2pzi_A 555 RTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRV 609 (681)
T ss_dssp HHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTH
T ss_pred HHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHH
Confidence 9999875 4465 5677777777766554 344444444444554444443
No 103
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.77 E-value=2.7e-07 Score=81.85 Aligned_cols=184 Identities=12% Similarity=0.069 Sum_probs=99.3
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 040365 110 WNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVS-FSSIMPACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYA 188 (514)
Q Consensus 110 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 188 (514)
+-.....+.+.|++++|+..|++..+. .|+... +.. . . .... ........+.+...|.
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~-~-~---~~~~--------------~~~~~~~~~~lg~~~~ 65 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYW-T-N---VDKN--------------SEISSKLATELALAYK 65 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHH-H-H---SCTT--------------SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHH-h-h---hcch--------------hhhhHHHHHHHHHHHH
Confidence 333445566777888888887777664 343222 211 0 0 0000 0011222334666677
Q ss_pred hcCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCC--HHHH
Q 040365 189 KCGNIRLARCIFDKMD---LHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKP-NSVAFVAVLTACSHAGL--IDKA 262 (514)
Q Consensus 189 k~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~--~~~a 262 (514)
+.|++++|...|++.. +.+...|..+...|...|++++|+..|++..+. .| +..++..+..++...|. .+.+
T Consensus 66 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~ 143 (208)
T 3urz_A 66 KNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKL 143 (208)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHH
Confidence 7777777777776654 335667777777777777777777777777764 34 34556666666554443 2334
Q ss_pred HHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHH
Q 040365 263 WSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISNMH-AGPTENVWLTLLS 319 (514)
Q Consensus 263 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~ 319 (514)
...++... ...|....+..+..++...|++++|...|++.. ..|+......|..
T Consensus 144 ~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 144 ETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred HHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 44444332 112222223334445556677777777777653 4566655554443
No 104
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.76 E-value=7.7e-08 Score=80.46 Aligned_cols=102 Identities=11% Similarity=0.067 Sum_probs=89.3
Q ss_pred CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHH
Q 040365 274 GIAP-SFEHYAAVADLLGRAGKLQEAYEFISNMH--AGPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVI 350 (514)
Q Consensus 274 ~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 350 (514)
.+.| +...+..+...+.+.|++++|.+.|++.. .+.+...|..+..++...|++++|+..|+++++++|+++..|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 4566 46677788888899999999999998863 33478899999999999999999999999999999999999999
Q ss_pred HHHHHHHccChhHHHHHHHHHHhCC
Q 040365 351 LSNTYAAARRWKDAASLRVFMRNKG 375 (514)
Q Consensus 351 l~~~~~~~g~~~~a~~~~~~m~~~g 375 (514)
++.+|...|++++|.+.+++..+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999987754
No 105
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.76 E-value=2.1e-07 Score=96.24 Aligned_cols=146 Identities=10% Similarity=-0.046 Sum_probs=104.0
Q ss_pred cCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHHHHHHH
Q 040365 155 LTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMD---LHDIVSWTAVIMGNALHGNAHDAISLF 231 (514)
Q Consensus 155 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~ 231 (514)
.|++++|.+.++++++.. +.+...+..+...|.+.|++++|.+.|++.. ..+...|..+...|...|++++|++.|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 467888888888887764 4567788888899999999999999998764 345678888888999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHhc---CCHHHHHHHHHhC
Q 040365 232 EQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAP-SFEHYAAVADLLGRA---GKLQEAYEFISNM 305 (514)
Q Consensus 232 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~---g~~~~A~~~~~~m 305 (514)
++..+.. +.+...+..+..++...|++++|.+.|+...+. .| +...+..+...+... |+.++|.+.+++.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL---LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 9988752 224567888888899999999999999988654 44 567788888888888 9999999888875
No 106
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.75 E-value=5e-07 Score=85.50 Aligned_cols=220 Identities=10% Similarity=0.009 Sum_probs=152.7
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 040365 120 NGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCI 199 (514)
Q Consensus 120 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~ 199 (514)
.|++++|.+++++..+.. +.. + +.-.++++.|...+..+ ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~------~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS------F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC------S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc------c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 567889999998876531 111 0 11146677777766654 4567778888888888
Q ss_pred HHhCCC-----CC----hhHHHHHHHHHHhCCChHHHHHHHHHHHHcC---CCCC--HHHHHHHHHHHHccCCHHHHHHH
Q 040365 200 FDKMDL-----HD----IVSWTAVIMGNALHGNAHDAISLFEQMEKDG---VKPN--SVAFVAVLTACSHAGLIDKAWSY 265 (514)
Q Consensus 200 ~~~m~~-----~d----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~--~~t~~~ll~a~~~~g~~~~a~~~ 265 (514)
|.+... .+ ..+|+.+...|...|++++|+..|++....- -.|. ..++..+...|.. |++++|+..
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 776531 11 3478888888999999999999999876521 1222 3567788888888 999999999
Q ss_pred HHHhHHhcCCCC----CHhHHHHHHHHHHhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCCHHHHHHH
Q 040365 266 FNSMTKDYGIAP----SFEHYAAVADLLGRAGKLQEAYEFISNMH----AGPT----ENVWLTLLSACRVHKNVELAGKV 333 (514)
Q Consensus 266 ~~~m~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p~----~~~~~~ll~~~~~~~~~~~a~~~ 333 (514)
|+.....+.-.. ....+..+...|.+.|++++|.+.|++.. ..++ ...+..+...+...|+++.|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 998765321111 14678888999999999999999998763 1122 23566777788888999999999
Q ss_pred HHHHHhcCCCCcch-----HHHHHHHHHHccChhHHHHH
Q 040365 334 AEKIFMIDPNNMGA-----YVILSNTYAAARRWKDAASL 367 (514)
Q Consensus 334 ~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~~ 367 (514)
+++.+ +.|....+ ...++.+| ..|+.+.+.++
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 99999 88865432 33455555 56776665553
No 107
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.74 E-value=3.6e-08 Score=82.59 Aligned_cols=121 Identities=9% Similarity=-0.028 Sum_probs=100.9
Q ss_pred HHHHHccCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCC
Q 040365 250 LTACSHAGLIDKAWSYFNSMTKDYGIAP-SFEHYAAVADLLGRAGKLQEAYEFISNMH-A-GPTENVWLTLLSACRVHKN 326 (514)
Q Consensus 250 l~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~-~p~~~~~~~ll~~~~~~~~ 326 (514)
...+...|++++|+..++... ...| +...+-.+...|.+.|++++|.+.|++.. . +.+..+|..+..++...|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 344566789999999998764 3445 45666788999999999999999999863 3 3478899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHH-HHHHHh
Q 040365 327 VELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASL-RVFMRN 373 (514)
Q Consensus 327 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~ 373 (514)
+++|+..++++++++|+++.+|..++.+|.+.|++++|.+. +++..+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999887765 466654
No 108
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.72 E-value=9.2e-08 Score=79.86 Aligned_cols=101 Identities=12% Similarity=0.027 Sum_probs=87.3
Q ss_pred CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHH
Q 040365 274 GIAP-SFEHYAAVADLLGRAGKLQEAYEFISNMH--AGPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVI 350 (514)
Q Consensus 274 ~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 350 (514)
.+.| +...+..+...+.+.|++++|...|++.. .+.+...|..+..++...|++++|+..++++++++|+++.++..
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 4455 45667778888899999999999998763 33478889999999999999999999999999999999999999
Q ss_pred HHHHHHHccChhHHHHHHHHHHhC
Q 040365 351 LSNTYAAARRWKDAASLRVFMRNK 374 (514)
Q Consensus 351 l~~~~~~~g~~~~a~~~~~~m~~~ 374 (514)
++.+|...|++++|.+.++...+.
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999988664
No 109
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.72 E-value=6.8e-07 Score=83.67 Aligned_cols=164 Identities=9% Similarity=-0.009 Sum_probs=104.1
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCC--CChhHHH-HHH
Q 040365 139 KPRHVSFSSIMPACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMDL--HDIVSWT-AVI 215 (514)
Q Consensus 139 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~--~d~~~~~-~li 215 (514)
+.+...+..+...+.+.|++++|.+.++.+++.. +.+...+..|...|.+.|++++|...|++... |+..... ...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 3344455566667777788888888888877764 45566777778888888888888888887763 3333222 222
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCH
Q 040365 216 MGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKL 295 (514)
Q Consensus 216 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 295 (514)
..+.+.++.++|+..|++..... +.+...+..+..++...|++++|...|..+.+...-..+...+..++..|...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 23556667777777777776642 22445666677777777777777777777765411111245566666666666666
Q ss_pred HHHHHHHHh
Q 040365 296 QEAYEFISN 304 (514)
Q Consensus 296 ~~A~~~~~~ 304 (514)
++|...+++
T Consensus 272 ~~a~~~~r~ 280 (287)
T 3qou_A 272 DALASXYRR 280 (287)
T ss_dssp CHHHHHHHH
T ss_pred CcHHHHHHH
Confidence 666655543
No 110
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.72 E-value=2.3e-07 Score=79.84 Aligned_cols=75 Identities=12% Similarity=-0.061 Sum_probs=57.1
Q ss_pred HHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--cchHHHHHHHHHHccChhHHHHHHHHHH
Q 040365 298 AYEFISNMH-AGP-TENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNN--MGAYVILSNTYAAARRWKDAASLRVFMR 372 (514)
Q Consensus 298 A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 372 (514)
|.+.+++.. ..| +...+..+...+...|++++|...++++++.+|+. +..+..++.+|...|+.++|...+++..
T Consensus 93 a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 93 ELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 444444431 223 57788888888888899999999999988888764 5588888899999999999888887654
No 111
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.70 E-value=3.5e-07 Score=81.14 Aligned_cols=126 Identities=10% Similarity=0.079 Sum_probs=94.0
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHH
Q 040365 213 AVIMGNALHGNAHDAISLFEQMEKDGVKP-NSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAP-SFEHYAAVADLLG 290 (514)
Q Consensus 213 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~ 290 (514)
.+...|.+.|++++|+..|++..+. .| +...+..+...+...|++++|...|+...+. .| +...+..+...|.
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHH
Confidence 3788888999999999999998885 44 4577888888899999999999999988754 56 5778888888776
Q ss_pred hcCC--HHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 040365 291 RAGK--LQEAYEFISNMHAGPTE--NVWLTLLSACRVHKNVELAGKVAEKIFMIDPNN 344 (514)
Q Consensus 291 ~~g~--~~~A~~~~~~m~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 344 (514)
..|. .+.+...++... .|+. ..|..+..++...|++++|+..+++++++.|++
T Consensus 134 ~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 134 LTAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 6553 445566666654 3433 344555666777889999999999999998863
No 112
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.70 E-value=5.8e-06 Score=77.46 Aligned_cols=212 Identities=9% Similarity=0.084 Sum_probs=168.4
Q ss_pred ChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC--CHHHHHHHHHhCC---CCChhHHHHHHHHH----HhC---CCh
Q 040365 157 TLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCG--NIRLARCIFDKMD---LHDIVSWTAVIMGN----ALH---GNA 224 (514)
Q Consensus 157 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g--~~~~A~~~~~~m~---~~d~~~~~~li~~~----~~~---g~~ 224 (514)
..++|.+..+.++..+ +.+..+|+.--..+...| +++++.+.++.+. ..+..+|+.--..+ ... +++
T Consensus 48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence 3468889999998876 566778888888888888 9999999999886 44667788765555 555 789
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH--HHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHhcCC------H
Q 040365 225 HDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLID--KAWSYFNSMTKDYGIAP-SFEHYAAVADLLGRAGK------L 295 (514)
Q Consensus 225 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~--~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~------~ 295 (514)
+++++++.++.+.. +-|...|..-...+.+.|.++ +++++++.+.+. .| +...|+.-...+.+.|. +
T Consensus 127 ~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~---d~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 127 YREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT---DLKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccchhhhH
Confidence 99999999999863 336677777777777888888 999999999765 44 56666666666666666 8
Q ss_pred HHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHhcC---CCCcchHHHHHHHHHHccChhHHHHHHH
Q 040365 296 QEAYEFISNMH--AGPTENVWLTLLSACRVHKNVE-LAGKVAEKIFMID---PNNMGAYVILSNTYAAARRWKDAASLRV 369 (514)
Q Consensus 296 ~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 369 (514)
+++++.++++. .+-|...|+.+-..+...|+.. ....+++++.+++ |.++.++..++.+|.+.|+.++|.++++
T Consensus 203 ~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 203 DEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 89999888763 3458889999999998888744 4566778777776 7888899999999999999999999999
Q ss_pred HHHh
Q 040365 370 FMRN 373 (514)
Q Consensus 370 ~m~~ 373 (514)
.+.+
T Consensus 283 ~l~~ 286 (306)
T 3dra_A 283 LLKS 286 (306)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9875
No 113
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.70 E-value=2.3e-06 Score=80.27 Aligned_cols=159 Identities=8% Similarity=-0.067 Sum_probs=114.4
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcC-CCCCHH----HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC----HhHHHH
Q 040365 214 VIMGNALHGNAHDAISLFEQMEKDG-VKPNSV----AFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPS----FEHYAA 284 (514)
Q Consensus 214 li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~ 284 (514)
.+..+...|++++|..++++..... ..|+.. .+..+...+...+++++|...|+...+...-.++ ...++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3566777888888888888877632 223321 2334566667777888888888887653221222 236788
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC-------CC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------CcchHH
Q 040365 285 VADLLGRAGKLQEAYEFISNMH-------AG-PT-ENVWLTLLSACRVHKNVELAGKVAEKIFMIDPN------NMGAYV 349 (514)
Q Consensus 285 li~~~~~~g~~~~A~~~~~~m~-------~~-p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~~ 349 (514)
+...|...|++++|.+.++++. .. +. ..++..+...|...|++++|...+++++++.+. -+.+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8888888888888888887653 11 11 247888999999999999999999999876522 256888
Q ss_pred HHHHHHHHccC-hhHHHHHHHHHH
Q 040365 350 ILSNTYAAARR-WKDAASLRVFMR 372 (514)
Q Consensus 350 ~l~~~~~~~g~-~~~a~~~~~~m~ 372 (514)
.++.+|.+.|+ +++|.+.+++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 99999999995 699999888765
No 114
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.69 E-value=3.8e-07 Score=78.44 Aligned_cols=155 Identities=9% Similarity=-0.056 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHccCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-Hh
Q 040365 78 IGSSLINMYAKCARVEDSHRLFCLLPV---KDAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPA-CA 153 (514)
Q Consensus 78 ~~~~li~~~~~~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~-~~ 153 (514)
....+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++.... .|+...+...... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHH
Confidence 344556667777888888888877663 35667777778888888888888888776553 2333322211111 11
Q ss_pred ccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCC--C---ChhHHHHHHHHHHhCCChHHHH
Q 040365 154 HLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMDL--H---DIVSWTAVIMGNALHGNAHDAI 228 (514)
Q Consensus 154 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~--~---d~~~~~~li~~~~~~g~~~~A~ 228 (514)
..+....+...++..++.. +.+...+..+...|.+.|++++|...|+++.. | +...|..+...+...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 2222233566666666653 44566666777777777777777777776542 2 2346677777777777777777
Q ss_pred HHHHHHH
Q 040365 229 SLFEQME 235 (514)
Q Consensus 229 ~l~~~m~ 235 (514)
..|++..
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776654
No 115
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.68 E-value=3.4e-07 Score=73.96 Aligned_cols=112 Identities=16% Similarity=0.102 Sum_probs=75.6
Q ss_pred CCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHH
Q 040365 239 VKPNS-VAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAP-SFEHYAAVADLLGRAGKLQEAYEFISNMH--AGPTENVW 314 (514)
Q Consensus 239 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~ 314 (514)
+.|+. ..+......+.+.|++++|+..|+...+. .| +...|..+..+|.+.|++++|++.+++.. .+.+...|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR---DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 34443 34556666677777777777777766543 34 56666677777777777777777776642 23456677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 040365 315 LTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSN 353 (514)
Q Consensus 315 ~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 353 (514)
..+..++...|++++|+..|+++++++|++..++..|.+
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 777777888888888888888888888877766665544
No 116
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.68 E-value=6.5e-07 Score=79.35 Aligned_cols=125 Identities=11% Similarity=0.035 Sum_probs=99.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHh
Q 040365 246 FVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISNMH--AGPTENVWLTLLSACRV 323 (514)
Q Consensus 246 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~ 323 (514)
+..+...+...|++++|...|+.. +.|+...+..+...|.+.|++++|.+.+++.. .+.+...|..+..++..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 344555666777777777777755 24566777777777888888888888777652 23467788888889999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCc----------------chHHHHHHHHHHccChhHHHHHHHHHHhCC
Q 040365 324 HKNVELAGKVAEKIFMIDPNNM----------------GAYVILSNTYAAARRWKDAASLRVFMRNKG 375 (514)
Q Consensus 324 ~~~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 375 (514)
.|++++|...++++++..|.+. ..+..++.+|...|++++|.+.++...+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999999999999888776 889999999999999999999999987654
No 117
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.65 E-value=3.1e-05 Score=78.12 Aligned_cols=385 Identities=7% Similarity=-0.072 Sum_probs=228.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCC-hHHHHHHHHHHHHh-CC-CCchhHHHHHHH
Q 040365 8 SWNTVIVGLARNGLYEEALNIVRQMGNVNLKPDSFTLSSVLPIFADYVD-VIKGKEIHGYAIRH-GL-DANVCIGSSLIN 84 (514)
Q Consensus 8 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~-g~-~~~~~~~~~li~ 84 (514)
.|...+..+-. |+++.+..+|++.... .|+...|..-++...+.++ .+...++|+.++.. |. +.+..+|...+.
T Consensus 17 vyer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~ 93 (493)
T 2uy1_A 17 IMEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIE 93 (493)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHH
T ss_pred HHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHH
Confidence 45566666654 7899999999999874 5788888887776655543 35567788888775 53 346677777777
Q ss_pred HHH----HCCCHHHHHHHHccCCC-C--Ch-hHHHHHHHHHH-------------HCCChhHHHHHHHHHHHCCCCCCHH
Q 040365 85 MYA----KCARVEDSHRLFCLLPV-K--DA-ISWNSIIAGCV-------------QNGLFDEGLKFFRQMLIAKIKPRHV 143 (514)
Q Consensus 85 ~~~----~~g~~~~A~~~f~~~~~-~--d~-~~~~~li~~~~-------------~~g~~~~A~~l~~~m~~~g~~p~~~ 143 (514)
.+. ..|+++.++++|++... | +. ..|......-. ..+.+..|..++.++...--..+..
T Consensus 94 f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~ 173 (493)
T 2uy1_A 94 EEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVK 173 (493)
T ss_dssp HTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHH
T ss_pred HHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHH
Confidence 654 34678889999987642 2 11 12222211100 0112333444444443210001333
Q ss_pred HHHHHHHHHhcc--CC-----hHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCChhHHHHH
Q 040365 144 SFSSIMPACAHL--TT-----LHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMD--LHDIVSWTAV 214 (514)
Q Consensus 144 t~~~ll~~~~~~--~~-----~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~--~~d~~~~~~l 214 (514)
.|...+.--... +. .+.+..++++++... +.+..+|-..+..+.+.|+++.|..+|++.. +.+...|.
T Consensus 174 ~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~P~~~~l~~-- 250 (493)
T 2uy1_A 174 NAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSL-- 250 (493)
T ss_dssp HHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHH--
T ss_pred HHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcHHHHH--
Confidence 454444433221 11 345677888888764 5567788888888888999999999998653 22333333
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcC---------CCC---CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHH
Q 040365 215 IMGNALHGNAHDAISLFEQMEKDG---------VKP---NSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHY 282 (514)
Q Consensus 215 i~~~~~~g~~~~A~~l~~~m~~~g---------~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~ 282 (514)
.|+...+.++. ++.+.+.- ..+ ....|...+....+.+..+.|..+|+.. +..+ ++...|
T Consensus 251 --~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~--~~~~v~ 322 (493)
T 2uy1_A 251 --YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEG--VGPHVF 322 (493)
T ss_dssp --HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSC--CCHHHH
T ss_pred --HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCC--CChHHH
Confidence 23322222222 23322210 011 1244666666666778899999999988 3211 244555
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcc
Q 040365 283 AAVADLLGRAG-KLQEAYEFISNMH--AGPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAAR 359 (514)
Q Consensus 283 ~~li~~~~~~g-~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 359 (514)
.....+-.+.+ +.+.|..+|+... .+.+...|...+.-....|+.+.|..+|+++ +.....|...+..-...|
T Consensus 323 i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G 398 (493)
T 2uy1_A 323 IYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVG 398 (493)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCC
Confidence 44343333334 6999999998752 2223556777777778899999999999997 234566777777777889
Q ss_pred ChhHHHHHHHHHHh----CC-CccCCc-ccEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcccCC
Q 040365 360 RWKDAASLRVFMRN----KG-MKKTPA-CSWIEVKNKAYAFVAGDKSHPFYHRINEALKELLERMEQEGYVPDT 427 (514)
Q Consensus 360 ~~~~a~~~~~~m~~----~g-~~~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~ 427 (514)
+.+.+.++++++.+ .+ -.|.+- .+|. ..++....++.++..-.-..+.|-.
T Consensus 399 ~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~-----------------~fe~~~g~l~~~~~~~~~~~~~~~~ 455 (493)
T 2uy1_A 399 SMELFRELVDQKMDAIKADAILPPLPPREHNV-----------------QMEGILGRYHCFLDSFNFLDLKIRD 455 (493)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCBCCCCCC--CC-----------------CCCHHHHHHHHHHHHHCBTTBCCCC
T ss_pred CHHHHHHHHHHHHHHhcccccCCcccccccHH-----------------HHHHHhhhHHHHHHHhhhhccccCC
Confidence 99999998887764 11 111111 2443 2245555666777776666666654
No 118
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.65 E-value=1.7e-06 Score=76.90 Aligned_cols=171 Identities=12% Similarity=-0.016 Sum_probs=108.5
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCChhHHHHHHHHHHhCC----ChHHHHHHHHHHHH
Q 040365 162 KQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMD-LHDIVSWTAVIMGNALHG----NAHDAISLFEQMEK 236 (514)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~-~~d~~~~~~li~~~~~~g----~~~~A~~l~~~m~~ 236 (514)
.+.+....+.| +...+..|..+|...|++++|.+.|++.. ..+..++..+...|.. + ++++|+.+|++..+
T Consensus 6 ~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~ 81 (212)
T 3rjv_A 6 GSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE 81 (212)
T ss_dssp THHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH
Confidence 34444444433 34445555556666666666666666554 2345555556555555 4 67777777777766
Q ss_pred cCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHhHHhcCCCCC---HhHHHHHHHHHHh----cCCHHHHHHHHHhC
Q 040365 237 DGVKPNSVAFVAVLTACSH----AGLIDKAWSYFNSMTKDYGIAPS---FEHYAAVADLLGR----AGKLQEAYEFISNM 305 (514)
Q Consensus 237 ~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~----~g~~~~A~~~~~~m 305 (514)
.| +...+..+...+.. .+++++|..+|+...+ ..|. +..+..|..+|.. .+++++|.++|++.
T Consensus 82 ~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~---~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 82 AG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR---DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp TT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS---STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred CC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH---cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 54 44556666666665 6778888888877643 2332 5667777777777 67788888888776
Q ss_pred CCC-CCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhcCC
Q 040365 306 HAG-PTENVWLTLLSACRVH-K-----NVELAGKVAEKIFMIDP 342 (514)
Q Consensus 306 ~~~-p~~~~~~~ll~~~~~~-~-----~~~~a~~~~~~~~~~~p 342 (514)
... ++...+..|...|... | +.++|...+++..+.+.
T Consensus 156 ~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 156 SSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 322 4556677777776543 2 78888888888877764
No 119
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.64 E-value=3e-07 Score=74.28 Aligned_cols=101 Identities=11% Similarity=0.069 Sum_probs=90.6
Q ss_pred CCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHH
Q 040365 274 GIAPS-FEHYAAVADLLGRAGKLQEAYEFISNMH--AGPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVI 350 (514)
Q Consensus 274 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 350 (514)
-+.|+ ...+......|.+.|++++|.+.|++.. .+.+..+|..+..++...|++++|+..++++++++|+++.+|..
T Consensus 7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 86 (126)
T 4gco_A 7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR 86 (126)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 35663 5677888999999999999999999863 34578899999999999999999999999999999999999999
Q ss_pred HHHHHHHccChhHHHHHHHHHHhC
Q 040365 351 LSNTYAAARRWKDAASLRVFMRNK 374 (514)
Q Consensus 351 l~~~~~~~g~~~~a~~~~~~m~~~ 374 (514)
++.+|...|++++|.+.+++..+.
T Consensus 87 lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999999988764
No 120
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.62 E-value=1.7e-07 Score=87.55 Aligned_cols=190 Identities=9% Similarity=-0.102 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 040365 177 MFIASSLLDMYAKCGNIRLARCIFDKMD---LHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKP-NSVAFVAVLTA 252 (514)
Q Consensus 177 ~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a 252 (514)
...+..+...|.+.|++++|...|++.. ..+...|..+...|.+.|++++|+..+++..+. .| +...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 3444555556666666666666666543 235556666666666667777777766666553 33 34556666666
Q ss_pred HHccCCHHHHHHHHHHhHHhcCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 040365 253 CSHAGLIDKAWSYFNSMTKDYGIAPS-FEHYAAVADLLGRAGKLQEAYEFISNMHAGPTENVWLTLLSACRVHKNVELAG 331 (514)
Q Consensus 253 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~ 331 (514)
+...|++++|...|+...+. .|+ ...+...+....+........ ........++..+...+. .+ ..|+.++|.
T Consensus 82 ~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~l~-~l-~~~~~~~A~ 155 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWN-SIEERRIHQESELHSYLT-RL-IAAEREREL 155 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHH-HHHHTCCCCCCHHHHHHH-HH-HHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHH-HHHHHHHhhhHHHHHHHH-HH-HHHHHHHHH
Confidence 77777777777777665432 121 001111111111111111111 122223333444433332 22 268889999
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHHc-cChhHHHHHHHHHHhC
Q 040365 332 KVAEKIFMIDPNNMGAYVILSNTYAAA-RRWKDAASLRVFMRNK 374 (514)
Q Consensus 332 ~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 374 (514)
..++++.+++|++......+...+.+. +++++|.++|....+.
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999998777777777777766 7799999999888653
No 121
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.62 E-value=1.3e-06 Score=81.88 Aligned_cols=163 Identities=8% Similarity=-0.094 Sum_probs=112.5
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-H----HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCC--CCC--Hh
Q 040365 210 SWTAVIMGNALHGNAHDAISLFEQMEKDGVKPN-S----VAFVAVLTACSHAGLIDKAWSYFNSMTKDYGI--APS--FE 280 (514)
Q Consensus 210 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p~--~~ 280 (514)
.+...+..+...|++++|++.+.+..+.....+ . ..+..+...+...|++++|...++...+...- .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 444556667777888888888877766422211 1 12334455567778888888888776532111 111 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC----CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------Cc
Q 040365 281 HYAAVADLLGRAGKLQEAYEFISNMH----AGPT-----ENVWLTLLSACRVHKNVELAGKVAEKIFMIDPN------NM 345 (514)
Q Consensus 281 ~~~~li~~~~~~g~~~~A~~~~~~m~----~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~------~~ 345 (514)
.|+.+...|...|++++|.+.+++.. ..|+ ..++..+...|...|++++|...++++++..+. -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 77788888888888888888887652 1122 257888889999999999999999998876421 15
Q ss_pred chHHHHHHHHHHccChhHH-HHHHHHHH
Q 040365 346 GAYVILSNTYAAARRWKDA-ASLRVFMR 372 (514)
Q Consensus 346 ~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 372 (514)
.+|..++.+|.+.|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 6788999999999999999 77676654
No 122
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.62 E-value=6.7e-07 Score=73.85 Aligned_cols=101 Identities=16% Similarity=0.011 Sum_probs=85.3
Q ss_pred CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHH
Q 040365 274 GIAP-SFEHYAAVADLLGRAGKLQEAYEFISNMH--AGPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVI 350 (514)
Q Consensus 274 ~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 350 (514)
.+.| +...+..+...+.+.|++++|...|++.. .+.+...|..+..++...|++++|+..++++++++|+++..+..
T Consensus 12 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 91 (142)
T 2xcb_A 12 GLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFH 91 (142)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 3445 34556667778888999999999988763 23477889999999999999999999999999999999999999
Q ss_pred HHHHHHHccChhHHHHHHHHHHhC
Q 040365 351 LSNTYAAARRWKDAASLRVFMRNK 374 (514)
Q Consensus 351 l~~~~~~~g~~~~a~~~~~~m~~~ 374 (514)
++.+|...|++++|.+.++...+.
T Consensus 92 lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 92 AAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999988654
No 123
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.62 E-value=3.6e-06 Score=75.46 Aligned_cols=183 Identities=15% Similarity=0.040 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCC-C-cHHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCC-h---hHHHH
Q 040365 142 HVSFSSIMPACAHLTTLHLGKQLHGCIIRNGFD-D-NMFIASSLLDMYAKCGNIRLARCIFDKMD--LHD-I---VSWTA 213 (514)
Q Consensus 142 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~li~~y~k~g~~~~A~~~~~~m~--~~d-~---~~~~~ 213 (514)
...+-.+...+.+.|++++|...++.+++.... + ....+..+..+|.+.|++++|...|++.. .|+ . .++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 345556677788999999999999999986421 1 24567788999999999999999999975 232 2 24555
Q ss_pred HHHHHHh------------------CCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhHHhcC
Q 040365 214 VIMGNAL------------------HGNAHDAISLFEQMEKDGVKPNSV-AFVAVLTACSHAGLIDKAWSYFNSMTKDYG 274 (514)
Q Consensus 214 li~~~~~------------------~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 274 (514)
+..++.. .|+.++|+..|+++.+. .|+.. ...... .. ..+...+
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~----~l------~~~~~~~----- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATK----RL------VFLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHH----HH------HHHHHHH-----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHH----HH------HHHHHHH-----
Confidence 5555543 57899999999999874 45542 111110 00 0111111
Q ss_pred CCCCHhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 040365 275 IAPSFEHYAAVADLLGRAGKLQEAYEFISNMH-AGPT----ENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNM 345 (514)
Q Consensus 275 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 345 (514)
......+...|.+.|++++|...|+++. ..|+ ...+..+..++.+.|+.++|...++.+....|++.
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 1122356777889999999999998763 2243 25688889999999999999999999988888764
No 124
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.61 E-value=1.4e-06 Score=73.54 Aligned_cols=126 Identities=10% Similarity=0.011 Sum_probs=93.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 040365 245 AFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAP-SFEHYAAVADLLGRAGKLQEAYEFISNMH--AGPTENVWLTLLSAC 321 (514)
Q Consensus 245 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~ 321 (514)
.+..+...+...|++++|...|+...+. .| +...+..+...+...|++++|.+.+++.. .+.+...|..+..++
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3455555666677777777777766543 23 46666777777777777777777776642 234577888888899
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHH--HHHccChhHHHHHHHHHHh
Q 040365 322 RVHKNVELAGKVAEKIFMIDPNNMGAYVILSNT--YAAARRWKDAASLRVFMRN 373 (514)
Q Consensus 322 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~m~~ 373 (514)
...|++++|...++++++..|.+...+..+..+ +...|++++|.+.+.....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999999888877544444 8888999999999887653
No 125
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.60 E-value=6.7e-06 Score=83.00 Aligned_cols=324 Identities=8% Similarity=-0.080 Sum_probs=197.8
Q ss_pred cC-ChhHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHCCC-HHHHH
Q 040365 19 NG-LYEEALNIVRQMGNVNLKPDSFTLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSSLINMYAKCAR-VEDSH 96 (514)
Q Consensus 19 ~g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~ 96 (514)
.| +++.|..+|+.+... -|. ++.+.+.++|+..+.. .|++.+|...+..-.+.++ .+...
T Consensus 7 ~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~ 68 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLY 68 (493)
T ss_dssp -----CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTH
T ss_pred cCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHH
Confidence 45 367777777777652 232 7899999999999885 4799999998888877764 34455
Q ss_pred HHHccCC------CCChhHHHHHHHHHH----HCCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHh-----------
Q 040365 97 RLFCLLP------VKDAISWNSIIAGCV----QNGLFDEGLKFFRQMLIAKIKPRH--VSFSSIMPACA----------- 153 (514)
Q Consensus 97 ~~f~~~~------~~d~~~~~~li~~~~----~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~~~~----------- 153 (514)
.+|+... ..+...|...+.-+. .+++.+.+..+|++.... ++.. ..|......-.
T Consensus 69 ~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~~~~~lw~~Y~~fE~~~~~~~~~~~~ 146 (493)
T 2uy1_A 69 EVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT--PMGSLSELWKDFENFELELNKITGKKIV 146 (493)
T ss_dssp HHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS--CCTTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC--hhhhHHHHHHHHHHHHHHhccccHHHHH
Confidence 5665532 235677888776543 346788899999999873 2221 12211111000
Q ss_pred --ccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc--CC-----HHHHHHHHHhCC---CCChhHHHHHHHHHHhC
Q 040365 154 --HLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKC--GN-----IRLARCIFDKMD---LHDIVSWTAVIMGNALH 221 (514)
Q Consensus 154 --~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~--g~-----~~~A~~~~~~m~---~~d~~~~~~li~~~~~~ 221 (514)
..+.+..|+.++..+.+.--..+...|...++.--.. |- .+.+..+|+++. ..+...|-..+.-+.+.
T Consensus 147 ~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~ 226 (493)
T 2uy1_A 147 GDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGI 226 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred HHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 0122333455554443321011334555555543221 11 244566777765 34567888888888899
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcC--------CCC---CHhHHHHHHHHHH
Q 040365 222 GNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYG--------IAP---SFEHYAAVADLLG 290 (514)
Q Consensus 222 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--------~~p---~~~~~~~li~~~~ 290 (514)
|+.++|..+|++.... |+...+.. ++......++. ++.+.+.+- ..+ ....|...++.+.
T Consensus 227 ~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~ 297 (493)
T 2uy1_A 227 GQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVL 297 (493)
T ss_dssp TCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHH
Confidence 9999999999999987 55433222 12221111111 222222110 011 2355777777777
Q ss_pred hcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHH
Q 040365 291 RAGKLQEAYEFISNMHAG-PTENVWLTLLSACR-VHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLR 368 (514)
Q Consensus 291 ~~g~~~~A~~~~~~m~~~-p~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 368 (514)
+.+.++.|..+|++...+ .+..+|......-. ..++.+.|..+|+.+++..|+++..+...+....+.|+.+.|+.++
T Consensus 298 r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~ 377 (493)
T 2uy1_A 298 KKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALF 377 (493)
T ss_dssp HHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 888999999999988322 23445543222222 2346999999999999988888877777888888999999999999
Q ss_pred HHH
Q 040365 369 VFM 371 (514)
Q Consensus 369 ~~m 371 (514)
+..
T Consensus 378 er~ 380 (493)
T 2uy1_A 378 KRL 380 (493)
T ss_dssp HHS
T ss_pred HHH
Confidence 986
No 126
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.58 E-value=2.6e-06 Score=75.40 Aligned_cols=146 Identities=10% Similarity=-0.077 Sum_probs=94.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 040365 179 IASSLLDMYAKCGNIRLARCIFDKMDLHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGL 258 (514)
Q Consensus 179 ~~~~li~~y~k~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 258 (514)
.+..+...|.+.|++++|.+.|++...++...|..+...|...|++++|+..|++..... +.+...+..+..++...|+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 344556667777777777777777766666777777777777777777777777766642 2244556666666667777
Q ss_pred HHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040365 259 IDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISNMHAGP-TENVWLTLLSACRVHKNVELAGKVAEKI 337 (514)
Q Consensus 259 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 337 (514)
+++|...|+...+...-.+... +...| +...| +...|..+..++...|+++.|...++++
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~--------~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLID--------YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEE--------CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCccHHH--------HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 7777777766654211111000 00000 01122 2467888888899999999999999999
Q ss_pred HhcCCCC
Q 040365 338 FMIDPNN 344 (514)
Q Consensus 338 ~~~~p~~ 344 (514)
++..|.+
T Consensus 148 l~~~p~~ 154 (213)
T 1hh8_A 148 TSMKSEP 154 (213)
T ss_dssp HTTCCSG
T ss_pred HHcCccc
Confidence 9998875
No 127
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.56 E-value=1.5e-06 Score=69.02 Aligned_cols=114 Identities=20% Similarity=0.221 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 040365 244 VAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISNMH--AGPTENVWLTLLSAC 321 (514)
Q Consensus 244 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~ 321 (514)
..+..+...+...|++++|..+|+.+.+.. +.+...+..+...+.+.|++++|..+++++. .+.+..+|..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 445555666666666666666666665431 1245566666777777777777777776652 234667788888888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcc
Q 040365 322 RVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAAR 359 (514)
Q Consensus 322 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 359 (514)
...|+++.|...++++.+..|.++..+..+..++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 88899999999999998888888888888777776543
No 128
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.54 E-value=1.5e-06 Score=69.71 Aligned_cols=116 Identities=11% Similarity=-0.002 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHH
Q 040365 243 SVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAP-SFEHYAAVADLLGRAGKLQEAYEFISNMH--AGPTENVWLTLLS 319 (514)
Q Consensus 243 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~ 319 (514)
...+..+...+...|++++|...|+..... .| +...+..+...+...|++++|.+.+++.. .+.+...|..+..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL---NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 345556666666777777777777766543 23 45666777777777777777777776642 2345677888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCh
Q 040365 320 ACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRW 361 (514)
Q Consensus 320 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 361 (514)
.+...|+++.|...++++++..|.++..+..+..++...|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 899999999999999999999999888888898888888775
No 129
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.53 E-value=1.5e-06 Score=70.13 Aligned_cols=114 Identities=15% Similarity=0.038 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 040365 244 VAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAP-SFEHYAAVADLLGRAGKLQEAYEFISNMH--AGPTENVWLTLLSA 320 (514)
Q Consensus 244 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~ 320 (514)
..+..+...+...|++++|...|+...+ ..| +...+..+...|...|++++|.+.+++.. .+.+...|..+..+
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIK---RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHT---TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 4455555555555555555555555532 233 44555556666666666666666665542 22356677778888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccC
Q 040365 321 CRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARR 360 (514)
Q Consensus 321 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 360 (514)
+...|++++|...++++++.+|.+...+..+..++...|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8888888888888888888888888888888888776653
No 130
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.53 E-value=1.1e-06 Score=84.37 Aligned_cols=94 Identities=19% Similarity=0.051 Sum_probs=81.1
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 040365 279 FEHYAAVADLLGRAGKLQEAYEFISNMH--AGPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYA 356 (514)
Q Consensus 279 ~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 356 (514)
...|..+..+|.+.|++++|.+.+++.. .+.+...|..+..++...|++++|+..|+++++++|++..++..+..++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 4677788888888999999988888763 23467889999999999999999999999999999999999999999999
Q ss_pred HccChhHH-HHHHHHHH
Q 040365 357 AARRWKDA-ASLRVFMR 372 (514)
Q Consensus 357 ~~g~~~~a-~~~~~~m~ 372 (514)
..|++++| .+.++.|.
T Consensus 276 ~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999 44666664
No 131
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.51 E-value=1.1e-05 Score=75.62 Aligned_cols=158 Identities=6% Similarity=0.006 Sum_probs=95.7
Q ss_pred HHHHHHCCChhHHHHHHHHHHHCC-CCCCHH----HHHHHHHHHhccCChHHHHHHHHHHHHcCCC-Cc----HHHHHHH
Q 040365 114 IAGCVQNGLFDEGLKFFRQMLIAK-IKPRHV----SFSSIMPACAHLTTLHLGKQLHGCIIRNGFD-DN----MFIASSL 183 (514)
Q Consensus 114 i~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l 183 (514)
+..+...|++++|..++++..+.. ..|+.. .+..+...+...+++++|...+..+++.... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 455666666777776666665532 122211 2223455555666677777777766663221 12 2356777
Q ss_pred HHHHHhcCCHHHHHHHHHhCCC------CC----hhHHHHHHHHHHhCCChHHHHHHHHHHHHc----CCCCC-HHHHHH
Q 040365 184 LDMYAKCGNIRLARCIFDKMDL------HD----IVSWTAVIMGNALHGNAHDAISLFEQMEKD----GVKPN-SVAFVA 248 (514)
Q Consensus 184 i~~y~k~g~~~~A~~~~~~m~~------~d----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ 248 (514)
...|...|++++|...|++... .+ ..+|+.+...|.+.|++++|+..+++..+. +..+. ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 7777777777777777766541 11 236677777788888888888877776542 22222 456777
Q ss_pred HHHHHHccC-CHHHHHHHHHHhHH
Q 040365 249 VLTACSHAG-LIDKAWSYFNSMTK 271 (514)
Q Consensus 249 ll~a~~~~g-~~~~a~~~~~~m~~ 271 (514)
+..++...| ..++|...++....
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHH
Confidence 777788888 45788777776643
No 132
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.49 E-value=1.2e-06 Score=82.85 Aligned_cols=197 Identities=8% Similarity=-0.069 Sum_probs=148.4
Q ss_pred ccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHH
Q 040365 154 HLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMDLHDIVSWTAVIMGNALHGNAHDAISLFEQ 233 (514)
Q Consensus 154 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~ 233 (514)
..|++++|.+++.+..+..- .. .+...|+++.|...|.+. ...|...|++++|...|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~-~~---------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK-TS---------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-CC---------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc-cc---------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHH
Confidence 35678889998888776421 11 111158889988887654 5678889999999999998
Q ss_pred HHHc----CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCC--CC--CHhHHHHHHHHHHhcCCHHHHHHHHHh
Q 040365 234 MEKD----GVKPN-SVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGI--AP--SFEHYAAVADLLGRAGKLQEAYEFISN 304 (514)
Q Consensus 234 m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p--~~~~~~~li~~~~~~g~~~~A~~~~~~ 304 (514)
..+. |-.+. ..+|..+...|...|++++|...|+...+-+.- .| ....+..+...|.+ |++++|++.+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 7653 21111 357888889999999999999999987553211 12 24677888889988 999999999987
Q ss_pred CC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc------chHHHHHHHHHHccChhHHHHHHHH
Q 040365 305 MH----AGPT----ENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNM------GAYVILSNTYAAARRWKDAASLRVF 370 (514)
Q Consensus 305 m~----~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~ 370 (514)
.. ...+ ..++..+...+...|++++|+..+++++++.|.+. ..+..++.++...|++++|...+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 53 1111 46788899999999999999999999998765432 3666778888899999999999998
Q ss_pred HH
Q 040365 371 MR 372 (514)
Q Consensus 371 m~ 372 (514)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 87
No 133
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.48 E-value=6.3e-07 Score=82.22 Aligned_cols=134 Identities=15% Similarity=0.005 Sum_probs=87.9
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC--HhHHHHHHHHHH
Q 040365 213 AVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPS--FEHYAAVADLLG 290 (514)
Q Consensus 213 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~ 290 (514)
.....+...|++++|.++|..+... .|+......+...+.+.+++++|+..|+...+. . .|. ...+..+..++.
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHHH
Confidence 3455566677777777777766553 354444444445677778888888887754221 1 121 235666777788
Q ss_pred hcCCHHHHHHHHHhCCCC---CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 040365 291 RAGKLQEAYEFISNMHAG---PT--ENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVIL 351 (514)
Q Consensus 291 ~~g~~~~A~~~~~~m~~~---p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 351 (514)
+.|++++|++.|++.... |. ...+..+..++...|+.++|...|+++...+|+ ...+..|
T Consensus 183 ~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 183 NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 888888888888876322 32 346677777888888888888888888888887 5444443
No 134
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.45 E-value=7.8e-06 Score=76.56 Aligned_cols=162 Identities=9% Similarity=-0.071 Sum_probs=112.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC---CCCh------hHHHHHHHHHHhCCChHHHHHHHHHHHHcCC---CCC--HH
Q 040365 179 IASSLLDMYAKCGNIRLARCIFDKMD---LHDI------VSWTAVIMGNALHGNAHDAISLFEQMEKDGV---KPN--SV 244 (514)
Q Consensus 179 ~~~~li~~y~k~g~~~~A~~~~~~m~---~~d~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~--~~ 244 (514)
.+...+..|...|++++|.+.+++.. .... ..+..+...+...|++++|+..|++...... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 34456677788888888888876543 1111 2234455566778889999998888875321 122 34
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-----HhHHHHHHHHHHhcCCHHHHHHHHHhCC-C------CC-CH
Q 040365 245 AFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPS-----FEHYAAVADLLGRAGKLQEAYEFISNMH-A------GP-TE 311 (514)
Q Consensus 245 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~-~------~p-~~ 311 (514)
++..+...|...|++++|..+|+...+.....|+ ...+..+...|.+.|++++|.+.+++.. . .. -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7788888888899999999998887632111222 2577888888999999999998887652 0 11 15
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHHhc
Q 040365 312 NVWLTLLSACRVHKNVELA-GKVAEKIFMI 340 (514)
Q Consensus 312 ~~~~~ll~~~~~~~~~~~a-~~~~~~~~~~ 340 (514)
.+|..+...+...|++++| ...+++++.+
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 6788888899999999999 7778776653
No 135
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.42 E-value=2.5e-06 Score=68.50 Aligned_cols=96 Identities=17% Similarity=0.041 Sum_probs=75.7
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 040365 279 FEHYAAVADLLGRAGKLQEAYEFISNMH--AGPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYA 356 (514)
Q Consensus 279 ~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 356 (514)
...+..+...+.+.|++++|.+.|++.. .+.+...|..+..++...|++++|+..++++++++|+++..|..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3455566667777888888888777652 23467788888888888888888888888888888888888888888888
Q ss_pred HccChhHHHHHHHHHHhC
Q 040365 357 AARRWKDAASLRVFMRNK 374 (514)
Q Consensus 357 ~~g~~~~a~~~~~~m~~~ 374 (514)
..|++++|...+++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 888888888888877654
No 136
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.42 E-value=1.4e-06 Score=74.87 Aligned_cols=116 Identities=10% Similarity=0.135 Sum_probs=70.9
Q ss_pred cCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHH-HHhcCCH--HH
Q 040365 256 AGLIDKAWSYFNSMTKDYGIAP-SFEHYAAVADLLGRAGKLQEAYEFISNMH--AGPTENVWLTLLSA-CRVHKNV--EL 329 (514)
Q Consensus 256 ~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~-~~~~~~~--~~ 329 (514)
.|++++|...++...+. .| +...+..+...|...|++++|.+.+++.. .+.+...|..+..+ +...|++ ++
T Consensus 23 ~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp ----CCCCHHHHHHHHH---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred ccCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 45555555555554432 22 44555556666666666666666665542 12345566666666 5666776 77
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHhC
Q 040365 330 AGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRNK 374 (514)
Q Consensus 330 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 374 (514)
|...++++++.+|.++..+..++.+|...|++++|...+++..+.
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 777777777777777777777777777777777777777776654
No 137
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.42 E-value=2.2e-06 Score=74.99 Aligned_cols=82 Identities=9% Similarity=-0.065 Sum_probs=38.8
Q ss_pred HCCCHHHHHH---HHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCChH
Q 040365 88 KCARVEDSHR---LFCLLPVKDAISWNSIIAGCVQNGLFDEGLKFFRQMLIA----KIKP-RHVSFSSIMPACAHLTTLH 159 (514)
Q Consensus 88 ~~g~~~~A~~---~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~ 159 (514)
..|++++|.+ ++..-+.....+++.+...+...|++++|+..|++.... +..| ....+..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3455555555 443333233445556666666666666666666655431 1111 1223344444455555555
Q ss_pred HHHHHHHHHH
Q 040365 160 LGKQLHGCII 169 (514)
Q Consensus 160 ~a~~~~~~~~ 169 (514)
+|.+.+.+.+
T Consensus 84 ~A~~~~~~al 93 (203)
T 3gw4_A 84 AARRCFLEER 93 (203)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 138
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.41 E-value=3.2e-06 Score=85.13 Aligned_cols=116 Identities=9% Similarity=0.001 Sum_probs=89.8
Q ss_pred HHHccCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCCHH
Q 040365 252 ACSHAGLIDKAWSYFNSMTKDYGIAP-SFEHYAAVADLLGRAGKLQEAYEFISNMH-A-GPTENVWLTLLSACRVHKNVE 328 (514)
Q Consensus 252 a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~-~p~~~~~~~ll~~~~~~~~~~ 328 (514)
.+...|++++|...|++..+. .| +...|..+..+|.+.|++++|.+.+++.. . +.+..+|..+..++...|+++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 445667777887777777543 44 46777788888888888888888887752 2 346788999999999999999
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHH--HHHccChhHHHHHHHH
Q 040365 329 LAGKVAEKIFMIDPNNMGAYVILSNT--YAAARRWKDAASLRVF 370 (514)
Q Consensus 329 ~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~ 370 (514)
+|+..++++++++|++...+..+..+ +.+.|++++|.+.+++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999888888 8899999999999874
No 139
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.41 E-value=0.00024 Score=67.33 Aligned_cols=178 Identities=9% Similarity=0.014 Sum_probs=115.6
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccC-ChHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 040365 110 WNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHV-SFSSIMPACAHLT-TLHLGKQLHGCIIRNGFDDNMFIASSLLDMY 187 (514)
Q Consensus 110 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 187 (514)
++.+-....+.+..++|++++.++... .|+.. .|+.--.++...+ .++++.++++.+++.. +-+..+|+.-...+
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL 133 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 444444445556667899999988875 34444 4455445555666 5888888888888765 56677777766666
Q ss_pred Hhc-C-CHHHHHHHHHhCCC---CChhHHHHHHHHHHhCCChH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 040365 188 AKC-G-NIRLARCIFDKMDL---HDIVSWTAVIMGNALHGNAH--------DAISLFEQMEKDGVKPNSVAFVAVLTACS 254 (514)
Q Consensus 188 ~k~-g-~~~~A~~~~~~m~~---~d~~~~~~li~~~~~~g~~~--------~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 254 (514)
.+. + +++++.++++.+.. +|..+|+.-.-.+.+.|.++ ++++.+.++.+... -|...|+.....+.
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRV 212 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHT
T ss_pred HHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 666 6 78888888888864 35567776555555555555 78888888877542 25566666666666
Q ss_pred ccCC-------HHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHhcCC
Q 040365 255 HAGL-------IDKAWSYFNSMTKDYGIAP-SFEHYAAVADLLGRAGK 294 (514)
Q Consensus 255 ~~g~-------~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~ 294 (514)
+.+. +++++++++.+... .| |...|+-+-..+.+.|+
T Consensus 213 ~l~~~~~~~~~~~eELe~~~~aI~~---~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 213 SRPGAETSSRSLQDELIYILKSIHL---IPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TSTTCCCCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTC
T ss_pred hccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCC
Confidence 6654 56677777666543 44 45555555555555544
No 140
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.41 E-value=2.3e-06 Score=66.58 Aligned_cols=98 Identities=13% Similarity=0.067 Sum_probs=76.7
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CcchHHHHHH
Q 040365 278 SFEHYAAVADLLGRAGKLQEAYEFISNMH--AGPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPN--NMGAYVILSN 353 (514)
Q Consensus 278 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~ 353 (514)
+...+..+...+.+.|++++|...+++.. .+.+..+|..+...+...|++++|...++++++..|. +...+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 34556667777777888888887777652 2345677888888888888888888888888888888 8888888888
Q ss_pred HHHHc-cChhHHHHHHHHHHhCC
Q 040365 354 TYAAA-RRWKDAASLRVFMRNKG 375 (514)
Q Consensus 354 ~~~~~-g~~~~a~~~~~~m~~~g 375 (514)
+|... |++++|.+.++...+..
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcc
Confidence 88888 88888888888887654
No 141
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.39 E-value=4.4e-06 Score=69.65 Aligned_cols=104 Identities=10% Similarity=0.001 Sum_probs=87.0
Q ss_pred CCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHH
Q 040365 239 VKPNS-VAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAP-SFEHYAAVADLLGRAGKLQEAYEFISNMH--AGPTENVW 314 (514)
Q Consensus 239 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~ 314 (514)
+.|+. ..+..+...+.+.|++++|...|+..... .| +...|..+..+|.+.|++++|.+.|++.. .+.+...|
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~ 107 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY---DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV 107 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHH
Confidence 45544 46777788889999999999999988754 56 67888999999999999999999998863 23457789
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 040365 315 LTLLSACRVHKNVELAGKVAEKIFMIDPNNM 345 (514)
Q Consensus 315 ~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 345 (514)
..+..++...|++++|...|++++++.|+++
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999999999999999998753
No 142
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.38 E-value=2.5e-06 Score=68.23 Aligned_cols=94 Identities=14% Similarity=0.038 Sum_probs=82.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHc
Q 040365 281 HYAAVADLLGRAGKLQEAYEFISNMH--AGPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAA 358 (514)
Q Consensus 281 ~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 358 (514)
.+..+...+.+.|++++|...+++.. .+.+...|..+..++...|++++|+..++++++++|+++..+..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 45566777889999999999998863 2347888999999999999999999999999999999999999999999999
Q ss_pred cChhHHHHHHHHHHhC
Q 040365 359 RRWKDAASLRVFMRNK 374 (514)
Q Consensus 359 g~~~~a~~~~~~m~~~ 374 (514)
|++++|...+++..+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999988754
No 143
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.37 E-value=9.9e-06 Score=70.78 Aligned_cols=151 Identities=15% Similarity=0.019 Sum_probs=69.6
Q ss_pred hcCCHHHHHH---HHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHccCCHH
Q 040365 189 KCGNIRLARC---IFDKMDLHDIVSWTAVIMGNALHGNAHDAISLFEQMEKD----GVKP-NSVAFVAVLTACSHAGLID 260 (514)
Q Consensus 189 k~g~~~~A~~---~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~ 260 (514)
..|++++|.+ .+..-+.....+++.+...+...|++++|+..|++.... +..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3456666666 443322233455566666666666666666666665441 1111 1234455555566666666
Q ss_pred HHHHHHHHhHHhcCCCC-----CHhHHHHHHHHHHhcCCHHHHHHHHHhCC----CCCCH----HHHHHHHHHHHhcCCH
Q 040365 261 KAWSYFNSMTKDYGIAP-----SFEHYAAVADLLGRAGKLQEAYEFISNMH----AGPTE----NVWLTLLSACRVHKNV 327 (514)
Q Consensus 261 ~a~~~~~~m~~~~~~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p~~----~~~~~ll~~~~~~~~~ 327 (514)
+|...++.......-.+ ....+..+...+...|++++|.+.+++.. ..++. .++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 66666655433211111 12234444455555555555555544431 01111 1233444444455555
Q ss_pred HHHHHHHHHHHh
Q 040365 328 ELAGKVAEKIFM 339 (514)
Q Consensus 328 ~~a~~~~~~~~~ 339 (514)
++|...++++++
T Consensus 164 ~~A~~~~~~al~ 175 (203)
T 3gw4_A 164 LEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555554444433
No 144
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.36 E-value=5.9e-06 Score=67.21 Aligned_cols=97 Identities=11% Similarity=-0.025 Sum_probs=79.4
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 040365 278 SFEHYAAVADLLGRAGKLQEAYEFISNMH--AGPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTY 355 (514)
Q Consensus 278 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 355 (514)
+...+..+...+...|++++|...|++.. .+.+...|..+..++...|+++.|...++++++++|+++..+..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 56677777777888888888888777652 2345778888888888899999999999999999998888999999999
Q ss_pred HHccChhHHHHHHHHHHhC
Q 040365 356 AAARRWKDAASLRVFMRNK 374 (514)
Q Consensus 356 ~~~g~~~~a~~~~~~m~~~ 374 (514)
...|++++|...+++..+.
T Consensus 88 ~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 9999999999988887654
No 145
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.36 E-value=5.5e-06 Score=65.70 Aligned_cols=93 Identities=14% Similarity=0.121 Sum_probs=43.6
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 040365 6 LVSWNTVIVGLARNGLYEEALNIVRQMGNVNLKPDSFTLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSSLINM 85 (514)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 85 (514)
...|..+...+.+.|++++|+..|+++.... +.+..++..+...+...|++++|...+..+.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 3445555555555555555555555555432 2233344444444555555555555555554432 2233333344444
Q ss_pred HHHCCCHHHHHHHHc
Q 040365 86 YAKCARVEDSHRLFC 100 (514)
Q Consensus 86 ~~~~g~~~~A~~~f~ 100 (514)
|.+.|++++|...|+
T Consensus 87 ~~~~~~~~~A~~~~~ 101 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQ 101 (125)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHH
Confidence 444444444444333
No 146
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.35 E-value=6.6e-06 Score=72.01 Aligned_cols=171 Identities=11% Similarity=-0.028 Sum_probs=100.8
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCC---ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 040365 184 LDMYAKCGNIRLARCIFDKMDLH---DIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLID 260 (514)
Q Consensus 184 i~~y~k~g~~~~A~~~~~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 260 (514)
+......|++++|.+.++.-... ....|..+...+...|++++|+..|++.... .|+...+... ..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~~ 80 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------ILL 80 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hHH
Confidence 34444556666666666543211 3445666677777778888888877777663 1211100000 000
Q ss_pred HHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040365 261 KAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISNMH--AGPTENVWLTLLSACRVHKNVELAGKVAEKIF 338 (514)
Q Consensus 261 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 338 (514)
.-. .. .....|..+..+|.+.|++++|...+++.. .+.+...|..+..++...|+++.|...+++++
T Consensus 81 ~~~---~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 81 DKK---KN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp HHH---HH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHH---HH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 000 00 013566677777888888888888887653 23467888899999999999999999999999
Q ss_pred hcCCCCcchHHHHHHHHHHccChhHHH-HHHHHHHhCC
Q 040365 339 MIDPNNMGAYVILSNTYAAARRWKDAA-SLRVFMRNKG 375 (514)
Q Consensus 339 ~~~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~~g 375 (514)
+++|.+...+..+..++...++.+++. ..+..|..++
T Consensus 150 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 150 SLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHSTTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred HHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999988888777 5566555443
No 147
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.33 E-value=1.1e-05 Score=67.79 Aligned_cols=126 Identities=12% Similarity=-0.039 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHH
Q 040365 210 SWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAP-SFEHYAAVADL 288 (514)
Q Consensus 210 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~ 288 (514)
.|..+...+...|++++|+..|++..... +.+...+..+...+...|++++|...++...+. .| +...+..+...
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHHHHHH
Confidence 34444444555555555555555554431 113344444555555555555555555554432 22 34455555555
Q ss_pred HHhcCCHHHHHHHHHhCC--CCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHh
Q 040365 289 LGRAGKLQEAYEFISNMH--AGPTENVWLT--LLSACRVHKNVELAGKVAEKIFM 339 (514)
Q Consensus 289 ~~~~g~~~~A~~~~~~m~--~~p~~~~~~~--ll~~~~~~~~~~~a~~~~~~~~~ 339 (514)
+.+.|++++|.+.+++.. .+.+...+.. +...+...|++++|...+++...
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 555555555555555432 1123333322 22224555666666666655443
No 148
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.33 E-value=4.6e-06 Score=70.57 Aligned_cols=92 Identities=14% Similarity=0.023 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHc
Q 040365 281 HYAAVADLLGRAGKLQEAYEFISNMH--AGPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAA 358 (514)
Q Consensus 281 ~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 358 (514)
.+..+...+.+.|++++|.+.|++.. .+.+...|..+..++...|++++|+..++++++++|.++..|..++.+|...
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 92 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDM 92 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 33344444444444444444444331 1123444444445555555555555555555555555555555555555555
Q ss_pred cChhHHHHHHHHHH
Q 040365 359 RRWKDAASLRVFMR 372 (514)
Q Consensus 359 g~~~~a~~~~~~m~ 372 (514)
|++++|.+.+++..
T Consensus 93 g~~~~A~~~~~~al 106 (164)
T 3sz7_A 93 ADYKGAKEAYEKGI 106 (164)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 55555555555444
No 149
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.32 E-value=8e-06 Score=69.94 Aligned_cols=126 Identities=13% Similarity=0.094 Sum_probs=96.5
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHH-HHhcCCH-
Q 040365 219 ALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAP-SFEHYAAVADL-LGRAGKL- 295 (514)
Q Consensus 219 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~-~~~~g~~- 295 (514)
...|++++|+..|++..... +.+...+..+...+...|++++|...|+...+. .| +...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL---RGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCCcc
Confidence 34678888888888877752 335677888888888999999999999888654 33 56777778888 7788998
Q ss_pred -HHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchH
Q 040365 296 -QEAYEFISNMH--AGPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAY 348 (514)
Q Consensus 296 -~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 348 (514)
++|...+++.. .+.+...|..+...+...|+++.|...++++++..|+++...
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 99999888763 234577888899999999999999999999999999876543
No 150
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.32 E-value=1.5e-05 Score=62.31 Aligned_cols=107 Identities=19% Similarity=0.112 Sum_probs=60.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 040365 245 AFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAP-SFEHYAAVADLLGRAGKLQEAYEFISNMH--AGPTENVWLTLLSAC 321 (514)
Q Consensus 245 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~ 321 (514)
.+..+...+...|++++|...|+..... .| +...+..+...+.+.|++++|...+++.. .+.+...|..+..++
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3444444555555555555555555432 22 34455555555555666666665555432 123455666666677
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 040365 322 RVHKNVELAGKVAEKIFMIDPNNMGAYVILSNT 354 (514)
Q Consensus 322 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 354 (514)
...|++++|...++++.+.+|+++..+..+..+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 777777777777777777777666555554443
No 151
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.31 E-value=7.9e-06 Score=64.05 Aligned_cols=98 Identities=10% Similarity=0.028 Sum_probs=87.3
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 040365 278 SFEHYAAVADLLGRAGKLQEAYEFISNMH--AGPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTY 355 (514)
Q Consensus 278 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 355 (514)
....+..+...+...|++++|.+.+++.. .+.+...|..+...+...|++++|...++++++.+|.++..+..++.+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34567778888999999999999999863 2347888999999999999999999999999999999999999999999
Q ss_pred HHccChhHHHHHHHHHHhCC
Q 040365 356 AAARRWKDAASLRVFMRNKG 375 (514)
Q Consensus 356 ~~~g~~~~a~~~~~~m~~~g 375 (514)
...|++++|.+.++...+..
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhhHHHHHHHHHHHHHcC
Confidence 99999999999999887653
No 152
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.31 E-value=2e-05 Score=72.32 Aligned_cols=182 Identities=7% Similarity=-0.050 Sum_probs=132.4
Q ss_pred hcCCHHHHHHHHHhCC---CCChhHHHHH-------HHHHHhCCChHHHHHHHHHHHHcCCCCCH---------------
Q 040365 189 KCGNIRLARCIFDKMD---LHDIVSWTAV-------IMGNALHGNAHDAISLFEQMEKDGVKPNS--------------- 243 (514)
Q Consensus 189 k~g~~~~A~~~~~~m~---~~d~~~~~~l-------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~--------------- 243 (514)
..++.+.|.+.|.+.. ......|+.+ ...+...++..+++..++.-.. +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 4678888888887775 3345677766 3455555555555555554333 33321
Q ss_pred -------HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH----H
Q 040365 244 -------VAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISNMHAGPTE----N 312 (514)
Q Consensus 244 -------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~----~ 312 (514)
.....+...+...|++++|.+.|..+.. ..|+......+...+.+.|++++|+..|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 1233456677889999999999998853 3464335566667899999999999999877544433 4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CC-CcchHHHHHHHHHHccChhHHHHHHHHHHhCC
Q 040365 313 VWLTLLSACRVHKNVELAGKVAEKIFMID--PN-NMGAYVILSNTYAAARRWKDAASLRVFMRNKG 375 (514)
Q Consensus 313 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 375 (514)
.+..|..++...|++++|+..|++..... |. .+.....+..++.+.|+.++|..+|+++....
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 68888999999999999999999998543 43 44577888999999999999999999998753
No 153
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.31 E-value=2.8e-06 Score=70.65 Aligned_cols=102 Identities=8% Similarity=-0.074 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 040365 244 VAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAP-SFEHYAAVADLLGRAGKLQEAYEFISNMH--AGPTENVWLTLLSA 320 (514)
Q Consensus 244 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~ 320 (514)
..+..+...+...|++++|...|+..... .| +...|..+..+|.+.|++++|.+.|++.. .+.+...|..+..+
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 45556666777778888888888777543 44 56677777788888888888888887753 23356778888889
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCcchH
Q 040365 321 CRVHKNVELAGKVAEKIFMIDPNNMGAY 348 (514)
Q Consensus 321 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 348 (514)
+...|++++|...+++++++.|+++...
T Consensus 99 ~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 9999999999999999999988876553
No 154
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.30 E-value=8.4e-06 Score=67.10 Aligned_cols=105 Identities=10% Similarity=-0.051 Sum_probs=76.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 040365 245 AFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAP-SFEHYAAVADLLGRAGKLQEAYEFISNMH--AGPTENVWLTLLSAC 321 (514)
Q Consensus 245 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~ 321 (514)
.+..+...+...|++++|...|+..... .| +...|..+..+|.+.|++++|...|++.. .+.+...|..+..++
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 4455556667777777777777777543 44 56667777777788888888888777652 233566778888888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 040365 322 RVHKNVELAGKVAEKIFMIDPNNMGAYVILS 352 (514)
Q Consensus 322 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 352 (514)
...|++++|...+++++++.|+++.......
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 127 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQPAHEALAA 127 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCcchHHHHH
Confidence 8999999999999999888887776554433
No 155
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.27 E-value=1.2e-05 Score=64.75 Aligned_cols=114 Identities=6% Similarity=-0.099 Sum_probs=76.3
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 040365 4 SDLVSWNTVIVGLARNGLYEEALNIVRQMGNVNLKPDSFTLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSSLI 83 (514)
Q Consensus 4 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 83 (514)
.++..|..+...+.+.|++++|+..|++..... +.+...+..+...+...|++++|...+..+++.. +.+..++..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 355677888888888888888888888887653 3355667777777778888888888888877764 44556666666
Q ss_pred HHHHHCCCHHHHHHHHccCCC---CChhHHHHHHHHHHH
Q 040365 84 NMYAKCARVEDSHRLFCLLPV---KDAISWNSIIAGCVQ 119 (514)
Q Consensus 84 ~~~~~~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~ 119 (514)
..|.+.|++++|.+.|++..+ .+...+..+...+.+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 666677777776666665431 123344444444443
No 156
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.27 E-value=1.5e-05 Score=63.87 Aligned_cols=108 Identities=13% Similarity=-0.017 Sum_probs=71.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 040365 245 AFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAP-SFEHYAAVADLLGRAGKLQEAYEFISNMH--AGPTENVWLTLLSAC 321 (514)
Q Consensus 245 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~ 321 (514)
.+......+...|++++|...|+...+. .| +...|..+..+|.+.|++++|.+.+++.. .+.+...|..+..++
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 4445555666666666666666666543 33 45666666777777777777777766542 223566777788888
Q ss_pred HhcCCHHHHHHHHHHHHhcC------CCCcchHHHHHHHH
Q 040365 322 RVHKNVELAGKVAEKIFMID------PNNMGAYVILSNTY 355 (514)
Q Consensus 322 ~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~ 355 (514)
...|++++|...++++++++ |.+......+..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 88888888888888888887 76665555555443
No 157
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.27 E-value=1.6e-05 Score=67.14 Aligned_cols=107 Identities=16% Similarity=-0.009 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHH
Q 040365 243 SVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAP-SFEHYAAVADLLGRAGKLQEAYEFISNMH--AGPTENVWLTLLS 319 (514)
Q Consensus 243 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~ 319 (514)
...+..+...+...|++++|+..|+...+. .| +...|..+..+|.+.|++++|.+.+++.. .+.+...|..+..
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 345666667777777777777777777543 34 56777778888888888888888887753 2345788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 040365 320 ACRVHKNVELAGKVAEKIFMIDPNNMGAYVILS 352 (514)
Q Consensus 320 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 352 (514)
++...|++++|...++++++++|++...+....
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 999999999999999999999999887665443
No 158
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.27 E-value=2e-05 Score=64.75 Aligned_cols=108 Identities=12% Similarity=-0.020 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHH
Q 040365 244 VAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPS----FEHYAAVADLLGRAGKLQEAYEFISNMH--AGPTENVWLTL 317 (514)
Q Consensus 244 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l 317 (514)
..+..+...+...|++++|...|+... ...|+ ...+..+...|...|++++|.+.+++.. .+.+...|..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQAL---GLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHH---TSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHH---HHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 344444455555555555555555443 22343 3455555556666666666666665532 12355667777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 040365 318 LSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNT 354 (514)
Q Consensus 318 l~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 354 (514)
..++...|++++|...++++++.+|++...+..+..+
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 7777777888888888888877777776655555443
No 159
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.24 E-value=4.1e-06 Score=78.06 Aligned_cols=182 Identities=8% Similarity=-0.061 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 040365 109 SWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYA 188 (514)
Q Consensus 109 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 188 (514)
.+..+...+.+.|++++|+..|++..... +.+...|..+..++...|++++|...+..+++.. +.+...+..+..+|.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34444444445555555555555444431 1233444444444455555555555555444432 333444455555555
Q ss_pred hcCCHHHHHHHHHhCCC--C-C-----hhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 040365 189 KCGNIRLARCIFDKMDL--H-D-----IVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLID 260 (514)
Q Consensus 189 k~g~~~~A~~~~~~m~~--~-d-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 260 (514)
+.|++++|...|++... | + ...|..+ ...+ +. -+.........++... ...+..+. .|+.+
T Consensus 84 ~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~--~~~~------~~-~~~~~~~~~~~~~~~i-~~~l~~l~-~~~~~ 152 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL--RIAK------KK-RWNSIEERRIHQESEL-HSYLTRLI-AAERE 152 (281)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH--HHHH------HH-HHHHHHHTCCCCCCHH-HHHHHHHH-HHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH--HHHH------HH-HHHHHHHHHHhhhHHH-HHHHHHHH-HHHHH
Confidence 55555555555544321 1 0 1111111 1111 11 1111222222222222 22222222 46777
Q ss_pred HHHHHHHHhHHhcCCCCC-HhHHHHHHHHHHhc-CCHHHHHHHHHhCC
Q 040365 261 KAWSYFNSMTKDYGIAPS-FEHYAAVADLLGRA-GKLQEAYEFISNMH 306 (514)
Q Consensus 261 ~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~-g~~~~A~~~~~~m~ 306 (514)
+|.+.++... ...|+ ......+...+.+. +.+++|.++|....
T Consensus 153 ~A~~~~~~al---~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~ 197 (281)
T 2c2l_A 153 RELEECQRNH---EGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVD 197 (281)
T ss_dssp HHHTTTSGGG---TTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHhhh---ccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 7777776554 33553 23333344444444 56777888887765
No 160
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.23 E-value=0.00037 Score=65.69 Aligned_cols=188 Identities=10% Similarity=0.027 Sum_probs=96.5
Q ss_pred hHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC--CHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCC-hHHHHHHH
Q 040365 158 LHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCG--NIRLARCIFDKMD---LHDIVSWTAVIMGNALHGN-AHDAISLF 231 (514)
Q Consensus 158 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g--~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~-~~~A~~l~ 231 (514)
++++..+++.++... +-+..+|+.-...+.+.| +++++..+++.+. .+|..+|+.-.-.+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 455566666666543 445566665555555555 3667777666664 4455666666666666666 46777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHcc--------------CCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHhc----
Q 040365 232 EQMEKDGVKPNSVAFVAVLTACSHA--------------GLIDKAWSYFNSMTKDYGIAP-SFEHYAAVADLLGRA---- 292 (514)
Q Consensus 232 ~~m~~~g~~p~~~t~~~ll~a~~~~--------------g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~---- 292 (514)
.++.+..+ -|...|+.....+.+. +.++++++++...... .| |...|+-+--.+.+.
T Consensus 169 ~~~I~~~p-~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 169 DSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHHHCS-CCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHSSSCGG
T ss_pred HHHHHHCC-CCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccCcc
Confidence 77766532 2444444443333332 3355555555555432 34 344444333333333
Q ss_pred -------CCHHHHHHHHHhCC-CCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 040365 293 -------GKLQEAYEFISNMH-AGPTENVWLTLLSA-----CRVHKNVELAGKVAEKIFMIDPNNMGAYVIL 351 (514)
Q Consensus 293 -------g~~~~A~~~~~~m~-~~p~~~~~~~ll~~-----~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 351 (514)
+.++++++.++++. ..||. .|..+..+ ....+..++....+.++.+++|...+-|.-|
T Consensus 245 ~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~ 315 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 315 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 33555555555442 23332 23221111 1124455566666666666666555444443
No 161
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.22 E-value=0.00046 Score=65.01 Aligned_cols=178 Identities=8% Similarity=0.048 Sum_probs=130.1
Q ss_pred HHHHHHHHHhCC---CCChhHHHHHHHHHHhCCC--hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC-HHHHHHHH
Q 040365 193 IRLARCIFDKMD---LHDIVSWTAVIMGNALHGN--AHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGL-IDKAWSYF 266 (514)
Q Consensus 193 ~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~ 266 (514)
++++..+++.+. .++..+|+.-.-.+...|+ +++++.++.++.+... -|...|+.-...+.+.|. ++++++++
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 567777777765 5577889988888888884 8999999999998642 366777776667777787 69999999
Q ss_pred HHhHHhcCCCC-CHhHHHHHHHHHHhc--------------CCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhc-----
Q 040365 267 NSMTKDYGIAP-SFEHYAAVADLLGRA--------------GKLQEAYEFISNMH--AGPTENVWLTLLSACRVH----- 324 (514)
Q Consensus 267 ~~m~~~~~~~p-~~~~~~~li~~~~~~--------------g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~----- 324 (514)
..+.+. .| |...|+....++.+. +.++++++++.+.. .+-|...|+-+-..+...
T Consensus 169 ~~~I~~---~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 169 DSLITR---NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHH---CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHH---CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccc
Confidence 999765 44 566666655555544 45888999888763 345788888766666555
Q ss_pred ------CCHHHHHHHHHHHHhcCCCCcchHHHHHHHH---HHccChhHHHHHHHHHHhC
Q 040365 325 ------KNVELAGKVAEKIFMIDPNNMGAYVILSNTY---AAARRWKDAASLRVFMRNK 374 (514)
Q Consensus 325 ------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~a~~~~~~m~~~ 374 (514)
+.++++++.++++++++|++...+..++... ...|..+++...+.++.+-
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 4688999999999999999865554443322 2356777888888888754
No 162
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.22 E-value=0.00063 Score=64.44 Aligned_cols=179 Identities=8% Similarity=-0.032 Sum_probs=108.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChh-hHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 040365 9 WNTVIVGLARNGLYEEALNIVRQMGNVNLKPDSF-TLSSVLPIFADYV-DVIKGKEIHGYAIRHGLDANVCIGSSLINMY 86 (514)
Q Consensus 9 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 86 (514)
|+.+-....+.+..++|++++..++..+ |+.. .|+.--..+...+ .+++++++++.+++.. +.+..+|+.--..+
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL 133 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 3433334444556678888888887753 4443 4555555555666 4888888888888765 56666777766666
Q ss_pred HHC-C-CHHHHHHHHccCCCC---ChhHHHHHHHHHHHCCChh--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 040365 87 AKC-A-RVEDSHRLFCLLPVK---DAISWNSIIAGCVQNGLFD--------EGLKFFRQMLIAKIKPRHVSFSSIMPACA 153 (514)
Q Consensus 87 ~~~-g-~~~~A~~~f~~~~~~---d~~~~~~li~~~~~~g~~~--------~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 153 (514)
.+. + +.++++++++.+.+. |-.+|+--.-.+.+.|.++ ++++.+.++.+.. +-|...|+.....+.
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRV 212 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHT
T ss_pred HHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 665 6 777888877777643 4556665554444444555 7777777777654 345556665555555
Q ss_pred ccCC-------hHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Q 040365 154 HLTT-------LHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGN 192 (514)
Q Consensus 154 ~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~ 192 (514)
+.+. ++++.+.....+... +.|...|+-+-..+.+.|.
T Consensus 213 ~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 213 SRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred hccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 5554 455555555555543 4455555555444444443
No 163
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.21 E-value=2.3e-05 Score=64.34 Aligned_cols=97 Identities=14% Similarity=0.001 Sum_probs=88.1
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 040365 278 SFEHYAAVADLLGRAGKLQEAYEFISNMH-AGPT----ENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILS 352 (514)
Q Consensus 278 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 352 (514)
+...+..+...+.+.|++++|.+.|++.. ..|+ ...|..+...+...|++++|+..++++++..|+++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 56778888999999999999999999863 4576 678899999999999999999999999999999999999999
Q ss_pred HHHHHccChhHHHHHHHHHHhC
Q 040365 353 NTYAAARRWKDAASLRVFMRNK 374 (514)
Q Consensus 353 ~~~~~~g~~~~a~~~~~~m~~~ 374 (514)
.+|...|++++|.+.+++..+.
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHc
Confidence 9999999999999999988764
No 164
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.21 E-value=1.6e-05 Score=63.44 Aligned_cols=97 Identities=13% Similarity=0.062 Sum_probs=87.5
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 040365 278 SFEHYAAVADLLGRAGKLQEAYEFISNMH--AGPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTY 355 (514)
Q Consensus 278 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 355 (514)
+...+..+...+...|++++|.+.+++.. .+.+...|..+...+...|++++|...++++++..|+++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 45677788889999999999999998863 3347888999999999999999999999999999999999999999999
Q ss_pred HHccChhHHHHHHHHHHhC
Q 040365 356 AAARRWKDAASLRVFMRNK 374 (514)
Q Consensus 356 ~~~g~~~~a~~~~~~m~~~ 374 (514)
...|++++|.+.+++..+.
T Consensus 91 ~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhc
Confidence 9999999999999988765
No 165
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.19 E-value=1.2e-05 Score=64.83 Aligned_cols=94 Identities=7% Similarity=-0.049 Sum_probs=74.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc-------hHHH
Q 040365 280 EHYAAVADLLGRAGKLQEAYEFISNMH--AGPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMG-------AYVI 350 (514)
Q Consensus 280 ~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~~~~ 350 (514)
..+..+...+.+.|++++|++.|++.. .+.+..+|..+..++...|++++|+..++++++++|++.. +|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 345567777788888888888887652 2345778888899999999999999999999988776543 5677
Q ss_pred HHHHHHHccChhHHHHHHHHHHh
Q 040365 351 LSNTYAAARRWKDAASLRVFMRN 373 (514)
Q Consensus 351 l~~~~~~~g~~~~a~~~~~~m~~ 373 (514)
++.+|...|++++|.+.+++..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 88888899999999999987765
No 166
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.18 E-value=2.7e-05 Score=63.21 Aligned_cols=99 Identities=8% Similarity=-0.036 Sum_probs=68.8
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHH
Q 040365 242 NSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAP-SFEHYAAVADLLGRAGKLQEAYEFISNMH--AGPTENVWLTLL 318 (514)
Q Consensus 242 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll 318 (514)
+...+..+...+...|++++|...|+..... .| +...+..+..++...|++++|...+++.. .+.+...|..+.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 4455666666666777777777777666543 23 45666677777777777777777776642 233567788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCC
Q 040365 319 SACRVHKNVELAGKVAEKIFMIDPN 343 (514)
Q Consensus 319 ~~~~~~~~~~~a~~~~~~~~~~~p~ 343 (514)
.++...|+++.|...+++++++.|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChh
Confidence 8888888888888888888887766
No 167
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.16 E-value=3e-05 Score=77.56 Aligned_cols=129 Identities=14% Similarity=0.053 Sum_probs=92.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-------------CHhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCC
Q 040365 245 AFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAP-------------SFEHYAAVADLLGRAGKLQEAYEFISNMH--AGP 309 (514)
Q Consensus 245 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p 309 (514)
.+..+...+.+.|++++|...|+...+...-.+ ....|..+..+|.+.|++++|+..+++.. .+.
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 349 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 349 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence 344444455555555555555555443211111 14678888889999999999999988763 234
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHH-HHHHHHh
Q 040365 310 TENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAAS-LRVFMRN 373 (514)
Q Consensus 310 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~-~~~~m~~ 373 (514)
+...|..+..++...|++++|+..|+++++++|++..++..+..++...|+++++.+ .++.|..
T Consensus 350 ~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 350 NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 688899999999999999999999999999999999999999999999999998875 4555543
No 168
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.12 E-value=3.2e-05 Score=73.94 Aligned_cols=143 Identities=10% Similarity=-0.029 Sum_probs=82.8
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 040365 106 DAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLD 185 (514)
Q Consensus 106 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 185 (514)
+...|..+...|.+.|++++|+..|++..+.. |+...+ ..+.+.++- +....++..+..
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~~~--------~~~~~~~~nla~ 204 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF-----------SNEEAQKAQ--------ALRLASHLNLAM 204 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC-----------CSHHHHHHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccC-----------ChHHHHHHH--------HHHHHHHHHHHH
Confidence 34567777788888888888888888877642 322000 001111000 011345555666
Q ss_pred HHHhcCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHH
Q 040365 186 MYAKCGNIRLARCIFDKMD---LHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKP-NSVAFVAVLTACSHAGLIDK 261 (514)
Q Consensus 186 ~y~k~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~ 261 (514)
+|.+.|++++|...|++.. ..+...|..+..+|...|++++|+..|++..+. .| +...+..+..++...|+.++
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666553 335566666666777777777777777776664 33 34556666666666677666
Q ss_pred H-HHHHHHhHH
Q 040365 262 A-WSYFNSMTK 271 (514)
Q Consensus 262 a-~~~~~~m~~ 271 (514)
+ ...++.|..
T Consensus 283 a~~~~~~~~~~ 293 (336)
T 1p5q_A 283 REKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 6 345555543
No 169
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.07 E-value=7.5e-06 Score=71.68 Aligned_cols=160 Identities=10% Similarity=-0.046 Sum_probs=75.0
Q ss_pred HHHHHHHCCCHHHHHHHHccCCCC---ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh
Q 040365 82 LINMYAKCARVEDSHRLFCLLPVK---DAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTL 158 (514)
Q Consensus 82 li~~~~~~g~~~~A~~~f~~~~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 158 (514)
.+......|+++.|.+.++.-.+. ....|..+...+.+.|++++|+..|++..... |+...+... ..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~--------~~ 79 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQ--------IL 79 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCH--------HH
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchh--------hH
Confidence 344445556677777666643321 34467777888888999999999998887642 211100000 00
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHH
Q 040365 159 HLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMD---LHDIVSWTAVIMGNALHGNAHDAISLFEQME 235 (514)
Q Consensus 159 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~ 235 (514)
..-. . .....++..+..+|.+.|++++|...|++.. ..+...|..+..+|...|++++|+..|++..
T Consensus 80 ~~~~---~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 80 LDKK---K-------NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp HHHH---H-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHH---H-------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 0000 0 0012344445555555555555555555443 2344555555555666666666666666655
Q ss_pred HcCCCC-CHHHHHHHHHHHHccCCHHHHH
Q 040365 236 KDGVKP-NSVAFVAVLTACSHAGLIDKAW 263 (514)
Q Consensus 236 ~~g~~p-~~~t~~~ll~a~~~~g~~~~a~ 263 (514)
+. .| +...+..+..++...++.+++.
T Consensus 150 ~~--~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 150 SL--NPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HH--STTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HH--CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 53 23 2334444444444444444444
No 170
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.07 E-value=2.2e-05 Score=62.74 Aligned_cols=95 Identities=12% Similarity=0.098 Sum_probs=76.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------cchHHH
Q 040365 280 EHYAAVADLLGRAGKLQEAYEFISNMH--AGPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNN-------MGAYVI 350 (514)
Q Consensus 280 ~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~ 350 (514)
..+..+...+...|++++|...+++.. .+.+...|..+...+...|+++.|...++++++..|.+ +.++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 456666777777888888888777652 23467778888888888999999999999988887665 778889
Q ss_pred HHHHHHHccChhHHHHHHHHHHhC
Q 040365 351 LSNTYAAARRWKDAASLRVFMRNK 374 (514)
Q Consensus 351 l~~~~~~~g~~~~a~~~~~~m~~~ 374 (514)
++.+|...|++++|.+.++...+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 999999999999999999988764
No 171
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.06 E-value=4.6e-05 Score=76.64 Aligned_cols=114 Identities=8% Similarity=-0.011 Sum_probs=58.1
Q ss_pred HHHHhcCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHH
Q 040365 185 DMYAKCGNIRLARCIFDKMD---LHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKP-NSVAFVAVLTACSHAGLID 260 (514)
Q Consensus 185 ~~y~k~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~ 260 (514)
..|.+.|++++|.+.|++.. ..+..+|..+..+|.+.|++++|++.|++..+. .| +...+..+..++...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHH
Confidence 34555666666666665543 234555666666666666666666666666553 23 3345555555666666666
Q ss_pred HHHHHHHHhHHhcCCCC-CHhHHHHHHHH--HHhcCCHHHHHHHHH
Q 040365 261 KAWSYFNSMTKDYGIAP-SFEHYAAVADL--LGRAGKLQEAYEFIS 303 (514)
Q Consensus 261 ~a~~~~~~m~~~~~~~p-~~~~~~~li~~--~~~~g~~~~A~~~~~ 303 (514)
+|...|++..+. .| +...+..+..+ +.+.|++++|.+.++
T Consensus 92 eA~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 666666655443 22 22233333333 455555555555555
No 172
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.05 E-value=5e-05 Score=63.84 Aligned_cols=64 Identities=9% Similarity=0.060 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHhC
Q 040365 311 ENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRNK 374 (514)
Q Consensus 311 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 374 (514)
..+|..+..++...|+++.|+..++++++++|.++.+|..++.+|...|++++|...+++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 4577888888888899999999999999989988888889999999999999999888877654
No 173
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.04 E-value=5.8e-05 Score=74.66 Aligned_cols=162 Identities=8% Similarity=-0.090 Sum_probs=84.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHc-CCCCCHH----HHHHHHHHHHccCCHHHHHHHHHHhHHh---cCCCC-CHhH
Q 040365 211 WTAVIMGNALHGNAHDAISLFEQMEKD-GVKPNSV----AFVAVLTACSHAGLIDKAWSYFNSMTKD---YGIAP-SFEH 281 (514)
Q Consensus 211 ~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~---~~~~p-~~~~ 281 (514)
+..+...|...|++++|.+++.++... +..++.. ..+.+-..+...|+.+++..++...... .+..+ ....
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 444555555566666666655554431 1111111 1112222233455666666665554321 11222 2345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC-------CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCC----cc
Q 040365 282 YAAVADLLGRAGKLQEAYEFISNMH-------AGP-TENVWLTLLSACRVHKNVELAGKVAEKIFMID---PNN----MG 346 (514)
Q Consensus 282 ~~~li~~~~~~g~~~~A~~~~~~m~-------~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---p~~----~~ 346 (514)
+..+...|...|++++|..++++.. .+| ...++..++..|...|+++.|..+++++.... +.+ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 5666666777777777766665531 112 13456666677777777777777777666542 211 23
Q ss_pred hHHHHHHHHHHccChhHHHHHHHHHH
Q 040365 347 AYVILSNTYAAARRWKDAASLRVFMR 372 (514)
Q Consensus 347 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 372 (514)
.+..++..+...|++++|.+.+....
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 44555666666777777776665553
No 174
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.04 E-value=5.3e-05 Score=60.90 Aligned_cols=90 Identities=13% Similarity=0.093 Sum_probs=40.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcC--CCCC----HHHHHHHHH
Q 040365 181 SSLLDMYAKCGNIRLARCIFDKMD---LHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDG--VKPN----SVAFVAVLT 251 (514)
Q Consensus 181 ~~li~~y~k~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~----~~t~~~ll~ 251 (514)
..|...|.+.|++++|++.|++.. +.+...|+.+..+|.+.|++++|++.|++..+.. ..++ ..+|..+..
T Consensus 12 ~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~ 91 (127)
T 4gcn_A 12 KDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGN 91 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence 334445555555555555554432 2234445555555555555555555555544311 0111 123334444
Q ss_pred HHHccCCHHHHHHHHHHhH
Q 040365 252 ACSHAGLIDKAWSYFNSMT 270 (514)
Q Consensus 252 a~~~~g~~~~a~~~~~~m~ 270 (514)
++...|++++|++.|+...
T Consensus 92 ~~~~~~~~~~A~~~~~kal 110 (127)
T 4gcn_A 92 AFQKQNDLSLAVQWFHRSL 110 (127)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 4444555555555554443
No 175
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.03 E-value=6.5e-06 Score=65.20 Aligned_cols=83 Identities=17% Similarity=0.115 Sum_probs=53.6
Q ss_pred cCCHHHHHHHHHhCCCC----C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHH
Q 040365 292 AGKLQEAYEFISNMHAG----P-TENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAAS 366 (514)
Q Consensus 292 ~g~~~~A~~~~~~m~~~----p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 366 (514)
.|++++|...|++.... | +...|..+..++...|++++|+..++++++.+|+++.++..++.+|...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 45566666666654311 2 235566677777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHhC
Q 040365 367 LRVFMRNK 374 (514)
Q Consensus 367 ~~~~m~~~ 374 (514)
.+++..+.
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77766543
No 176
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.02 E-value=6e-05 Score=73.04 Aligned_cols=90 Identities=12% Similarity=0.021 Sum_probs=78.3
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 040365 278 SFEHYAAVADLLGRAGKLQEAYEFISNMH-AGP-TENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTY 355 (514)
Q Consensus 278 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 355 (514)
+...|..+..+|.+.|++++|.+.+++.. ..| +...|..+..++...|++++|+..++++++++|++...+..+..++
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 45778888899999999999999998763 334 6788999999999999999999999999999999999999999999
Q ss_pred HHccChhHHHHH
Q 040365 356 AAARRWKDAASL 367 (514)
Q Consensus 356 ~~~g~~~~a~~~ 367 (514)
...++.+++.+.
T Consensus 352 ~~~~~~~~a~k~ 363 (370)
T 1ihg_A 352 QKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 998888877653
No 177
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.01 E-value=0.00015 Score=71.64 Aligned_cols=161 Identities=7% Similarity=-0.005 Sum_probs=92.9
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHcC-CCCc----HHHHHHHHHHHHhcCCHHHHHHHHHhCC--------CC-ChhH
Q 040365 145 FSSIMPACAHLTTLHLGKQLHGCIIRNG-FDDN----MFIASSLLDMYAKCGNIRLARCIFDKMD--------LH-DIVS 210 (514)
Q Consensus 145 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~----~~~~~~li~~y~k~g~~~~A~~~~~~m~--------~~-d~~~ 210 (514)
+..+...|...|++++|.+.+..+.+.- -.++ ..+.+.+-..+...|+.+.|.++++... .+ -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 3445555555555555555555443320 0111 1223333344445566666666665542 11 1245
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHc--CC--CCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcC-C-CC-C--Hh
Q 040365 211 WTAVIMGNALHGNAHDAISLFEQMEKD--GV--KPN-SVAFVAVLTACSHAGLIDKAWSYFNSMTKDYG-I-AP-S--FE 280 (514)
Q Consensus 211 ~~~li~~~~~~g~~~~A~~l~~~m~~~--g~--~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-~-~p-~--~~ 280 (514)
+..+...|...|++++|..++++.... +. +|. ..++..++..|...|++++|..+++....... + .| . ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 666777777788888888887776542 11 222 24677777888888888888888877644211 1 11 1 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC
Q 040365 281 HYAAVADLLGRAGKLQEAYEFISNM 305 (514)
Q Consensus 281 ~~~~li~~~~~~g~~~~A~~~~~~m 305 (514)
.+..+...+...|++++|...|.+.
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 5666777777888888887776554
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.01 E-value=4.5e-05 Score=61.08 Aligned_cols=90 Identities=17% Similarity=0.116 Sum_probs=56.5
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC-CCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---cchHHHHHHHHH
Q 040365 285 VADLLGRAGKLQEAYEFISNMH-AGPT-E---NVWLTLLSACRVHKNVELAGKVAEKIFMIDPNN---MGAYVILSNTYA 356 (514)
Q Consensus 285 li~~~~~~g~~~~A~~~~~~m~-~~p~-~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~ 356 (514)
+...+.+.|++++|.+.|++.. ..|+ . ..+..+..++...|++++|...++++++..|++ +.++..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 3444556666666666665542 1122 2 355666666677777777777777777777766 555667777777
Q ss_pred HccChhHHHHHHHHHHhC
Q 040365 357 AARRWKDAASLRVFMRNK 374 (514)
Q Consensus 357 ~~g~~~~a~~~~~~m~~~ 374 (514)
..|++++|...++...+.
T Consensus 88 ~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 777777777777766553
No 179
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.00 E-value=6.8e-05 Score=62.23 Aligned_cols=62 Identities=18% Similarity=0.066 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------CCcchHHHHHHHHHHccChhHHHHHHHHHHh
Q 040365 312 NVWLTLLSACRVHKNVELAGKVAEKIFMIDP------NNMGAYVILSNTYAAARRWKDAASLRVFMRN 373 (514)
Q Consensus 312 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 373 (514)
.++..+...+...|++++|...+++.++..+ .....+..++..|...|++++|.+.+++..+
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3455566666777777777777776665421 1234667788888888888888888877653
No 180
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.99 E-value=5.7e-05 Score=60.16 Aligned_cols=96 Identities=11% Similarity=0.023 Sum_probs=62.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhCC-CC-CCHHHHHHHHHHHHh
Q 040365 247 VAVLTACSHAGLIDKAWSYFNSMTKDYGIAP-SFEHYAAVADLLGRAGKLQEAYEFISNMH-AG-PTENVWLTLLSACRV 323 (514)
Q Consensus 247 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~-p~~~~~~~ll~~~~~ 323 (514)
..+...+.+.|++++|...|+...+. .| +...|..+..++.+.|++++|...+++.. .. .+...|..+..++..
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34445566677777777777766543 44 56666677777777777777777777652 22 356677778888888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCc
Q 040365 324 HKNVELAGKVAEKIFMIDPNNM 345 (514)
Q Consensus 324 ~~~~~~a~~~~~~~~~~~p~~~ 345 (514)
.|++++|...++++++.+|.+.
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHC------
T ss_pred cCCHHHHHHHHHHHHHhCcCCC
Confidence 8888888888888888777643
No 181
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.99 E-value=3.8e-05 Score=63.70 Aligned_cols=62 Identities=11% Similarity=-0.050 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCCcchH----HHHHHHHHHccChhHHHHHHHHHHh
Q 040365 312 NVWLTLLSACRVHKNVELAGKVAEKIFMI-------DPNNMGAY----VILSNTYAAARRWKDAASLRVFMRN 373 (514)
Q Consensus 312 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~ 373 (514)
..|..+..++...|++++|+..+++++++ +|++...| .....++...|++++|...|++..+
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 38888888899999999999999999988 99999899 9999999999999999999998864
No 182
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.98 E-value=5.4e-05 Score=60.38 Aligned_cols=106 Identities=7% Similarity=-0.036 Sum_probs=55.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhCC-----CCCC----HHHHHHH
Q 040365 247 VAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISNMH-----AGPT----ENVWLTL 317 (514)
Q Consensus 247 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~p~----~~~~~~l 317 (514)
..+...+...|++++|..+|+...+.. +.+...+..+...|...|++++|...+++.. ..++ ..+|..+
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 333444444444444444444443321 1133444444555555555555555554431 0112 4566677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 040365 318 LSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTY 355 (514)
Q Consensus 318 l~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 355 (514)
..++...|+++.|...++++++..| ++.....+..+.
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~ 122 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 7777777788888888877777776 455555544443
No 183
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.94 E-value=5.7e-05 Score=58.37 Aligned_cols=92 Identities=9% Similarity=-0.092 Sum_probs=45.6
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHCCCHHHHHHHHccCC---CC--ChhHHHHHHHHHH
Q 040365 44 LSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSSLINMYAKCARVEDSHRLFCLLP---VK--DAISWNSIIAGCV 118 (514)
Q Consensus 44 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~--d~~~~~~li~~~~ 118 (514)
+..+...+...|++++|...+..+++.. +.+..++..+...|.+.|++++|...|++.. .. +...|..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~ 87 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALR 87 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHH
Confidence 3333344444444444444444444432 2333444445555555555555555554432 12 3455556666666
Q ss_pred HC-CChhHHHHHHHHHHHC
Q 040365 119 QN-GLFDEGLKFFRQMLIA 136 (514)
Q Consensus 119 ~~-g~~~~A~~l~~~m~~~ 136 (514)
+. |++++|++.|++....
T Consensus 88 ~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 88 YIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp TCSSCSHHHHHHHHHHGGG
T ss_pred HHhCCHHHHHHHHHHHhhc
Confidence 66 6666666666666554
No 184
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.94 E-value=0.00023 Score=56.78 Aligned_cols=100 Identities=16% Similarity=0.021 Sum_probs=60.6
Q ss_pred HHHHHccCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHh
Q 040365 250 LTACSHAGLIDKAWSYFNSMTKDYGIAP-SFEHYAAVADLLGRAGKLQEAYEFISNMH-AGPT----ENVWLTLLSACRV 323 (514)
Q Consensus 250 l~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~----~~~~~~ll~~~~~ 323 (514)
...+...|++++|...|+.+.+...-.| ....+..+...+.+.|++++|...+++.. ..|+ ...+..+..++..
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~ 88 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYG 88 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH
Confidence 3445556666666666666544311111 01355556666666677777766666542 1222 4566777777888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcchHH
Q 040365 324 HKNVELAGKVAEKIFMIDPNNMGAYV 349 (514)
Q Consensus 324 ~~~~~~a~~~~~~~~~~~p~~~~~~~ 349 (514)
.|++++|...++++++..|+++....
T Consensus 89 ~g~~~~A~~~~~~~~~~~p~~~~~~~ 114 (129)
T 2xev_A 89 EGKNTEAQQTLQQVATQYPGSDAARV 114 (129)
T ss_dssp TTCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred cCCHHHHHHHHHHHHHHCCCChHHHH
Confidence 88888888888888888887654433
No 185
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.91 E-value=7.1e-05 Score=62.10 Aligned_cols=96 Identities=15% Similarity=0.063 Sum_probs=51.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC----CHhHHHHHHHHHHhcCCHHHHHHHHHhCC----CCCC----HH
Q 040365 245 AFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAP----SFEHYAAVADLLGRAGKLQEAYEFISNMH----AGPT----EN 312 (514)
Q Consensus 245 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p~----~~ 312 (514)
++..+...+...|++++|..+++...+...-.+ ....+..+...+...|++++|.+.+++.. ..++ ..
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 344444455555555555555554432211011 12344555555666666666666555431 0111 24
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 040365 313 VWLTLLSACRVHKNVELAGKVAEKIFMI 340 (514)
Q Consensus 313 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 340 (514)
++..+...+...|++++|...+++.+++
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5666777777788888888887777654
No 186
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.89 E-value=5e-05 Score=63.84 Aligned_cols=76 Identities=16% Similarity=0.076 Sum_probs=60.7
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc-chHHHHHHH
Q 040365 279 FEHYAAVADLLGRAGKLQEAYEFISNMH--AGPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNM-GAYVILSNT 354 (514)
Q Consensus 279 ~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~ 354 (514)
...|..+..+|.+.|++++|...+++.. .+.+...|..+..++...|++++|...++++++++|+++ .....+..+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 4677788888889999999998888753 234678899999999999999999999999999999887 334444333
No 187
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.89 E-value=3.5e-05 Score=73.79 Aligned_cols=147 Identities=8% Similarity=-0.087 Sum_probs=82.7
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHH
Q 040365 208 IVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVAD 287 (514)
Q Consensus 208 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 287 (514)
...|..+...+.+.|++++|+..|++.... .|+... +...++.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 345777777788889999999999988764 455432 233444444433221 136778888
Q ss_pred HHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH-HHccChhHH
Q 040365 288 LLGRAGKLQEAYEFISNMH--AGPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTY-AAARRWKDA 364 (514)
Q Consensus 288 ~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~a 364 (514)
+|.+.|++++|...+++.. .+.+...|..+..++...|++++|+..|+++++++|++...+..|..+. ...+..+.+
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999888763 2346788999999999999999999999999999999888888887774 445667778
Q ss_pred HHHHHHHHhC
Q 040365 365 ASLRVFMRNK 374 (514)
Q Consensus 365 ~~~~~~m~~~ 374 (514)
.+.+..|...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 8888877654
No 188
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.83 E-value=5.2e-05 Score=62.87 Aligned_cols=71 Identities=14% Similarity=0.018 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC-C-------CCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch
Q 040365 281 HYAAVADLLGRAGKLQEAYEFISNMH-A-------GPT-ENVW----LTLLSACRVHKNVELAGKVAEKIFMIDPNNMGA 347 (514)
Q Consensus 281 ~~~~li~~~~~~g~~~~A~~~~~~m~-~-------~p~-~~~~----~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 347 (514)
.|..+..++.+.|++++|+..+++.. . .|+ ...| .....++...|++++|+..|+++++++|.+...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 56666666666666666666655432 2 564 5678 899999999999999999999999999988765
Q ss_pred HHHH
Q 040365 348 YVIL 351 (514)
Q Consensus 348 ~~~l 351 (514)
+.-+
T Consensus 139 ~~~~ 142 (159)
T 2hr2_A 139 TPGK 142 (159)
T ss_dssp CTTH
T ss_pred HHHH
Confidence 5443
No 189
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.83 E-value=3.6e-05 Score=60.80 Aligned_cols=91 Identities=14% Similarity=0.137 Sum_probs=55.0
Q ss_pred cCCHHHHHHHHHHhHHhcCC-CC-CHhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHH
Q 040365 256 AGLIDKAWSYFNSMTKDYGI-AP-SFEHYAAVADLLGRAGKLQEAYEFISNMH--AGPTENVWLTLLSACRVHKNVELAG 331 (514)
Q Consensus 256 ~g~~~~a~~~~~~m~~~~~~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~ 331 (514)
.|++++|+..|++..+. +. .| +...+..+...|.+.|++++|.+.+++.. .+.+..++..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 35555566666655421 10 13 34556666666667777777777666642 2234666777777778888888888
Q ss_pred HHHHHHHhcCCCCcch
Q 040365 332 KVAEKIFMIDPNNMGA 347 (514)
Q Consensus 332 ~~~~~~~~~~p~~~~~ 347 (514)
..++++++..|+++..
T Consensus 82 ~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 82 ELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHhCCCcHHH
Confidence 8888888777776543
No 190
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.82 E-value=6.7e-05 Score=58.12 Aligned_cols=92 Identities=11% Similarity=-0.056 Sum_probs=72.7
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------cchHH
Q 040365 278 SFEHYAAVADLLGRAGKLQEAYEFISNMH--AGPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNN------MGAYV 349 (514)
Q Consensus 278 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~ 349 (514)
+...+..+...+.+.|++++|.+.+++.. .+.+...|..+..++...|++++|+..++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 34566777778888888888888887753 23467888899999999999999999999999999988 66777
Q ss_pred HHHHHHHHccChhHHHHHHH
Q 040365 350 ILSNTYAAARRWKDAASLRV 369 (514)
Q Consensus 350 ~l~~~~~~~g~~~~a~~~~~ 369 (514)
.+..++...|+++.|...++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 78888888887776655443
No 191
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.82 E-value=0.0001 Score=56.27 Aligned_cols=66 Identities=21% Similarity=0.181 Sum_probs=60.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHhC
Q 040365 309 PTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRNK 374 (514)
Q Consensus 309 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 374 (514)
.+...|..+...+...|++++|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 467889999999999999999999999999999999999999999999999999999999987653
No 192
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.81 E-value=0.00014 Score=72.93 Aligned_cols=125 Identities=11% Similarity=0.078 Sum_probs=96.8
Q ss_pred HHHccCCHHHHHHHHHHhHHhcC--CC---C-CHhHHHHHHHHHHhcCCHHHHHHHHHhCC---------CCCCH-HHHH
Q 040365 252 ACSHAGLIDKAWSYFNSMTKDYG--IA---P-SFEHYAAVADLLGRAGKLQEAYEFISNMH---------AGPTE-NVWL 315 (514)
Q Consensus 252 a~~~~g~~~~a~~~~~~m~~~~~--~~---p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~---------~~p~~-~~~~ 315 (514)
.+...|++++|..++++..+... +. | ...+++.|..+|...|++++|..++++.. ..|+. .+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 35578899999888877655422 12 2 24678888999999999999998887652 23443 5689
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCcc---hHHHHHHHHHHccChhHHHHHHHHHHhCCC
Q 040365 316 TLLSACRVHKNVELAGKVAEKIFM-----IDPNNMG---AYVILSNTYAAARRWKDAASLRVFMRNKGM 376 (514)
Q Consensus 316 ~ll~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 376 (514)
.|...|...|++++|+.+++++++ ++|+.+. ....|..++...|++++|..++.+++++-.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~ 466 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAAL 466 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999886 4566544 456788889999999999999999987543
No 193
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.81 E-value=0.0012 Score=67.59 Aligned_cols=167 Identities=8% Similarity=0.004 Sum_probs=124.9
Q ss_pred HHHHHHHHHhCC---CCChhHHHHHHHHHHhCCC----------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC--
Q 040365 193 IRLARCIFDKMD---LHDIVSWTAVIMGNALHGN----------AHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAG-- 257 (514)
Q Consensus 193 ~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g-- 257 (514)
-++|.+.++.+. ..+...|+.--..+...|+ ++++++.++++.+... -+...|..-...+.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-K~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccc
Confidence 355666666664 3345667766666666665 7888888888887532 25567777777777888
Q ss_pred CHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHhcC-CHHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhc---------
Q 040365 258 LIDKAWSYFNSMTKDYGIAP-SFEHYAAVADLLGRAG-KLQEAYEFISNMH-AG-PTENVWLTLLSACRVH--------- 324 (514)
Q Consensus 258 ~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g-~~~~A~~~~~~m~-~~-p~~~~~~~ll~~~~~~--------- 324 (514)
++++++..++.+.+. .| +...|+.-.-.+.+.| ..+++++.++++. .. -|...|+.....+...
T Consensus 124 ~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 124 NWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred cHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence 678899998888764 44 5667777667777788 8888999888874 22 4678888877776653
Q ss_pred -----CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhH
Q 040365 325 -----KNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKD 363 (514)
Q Consensus 325 -----~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 363 (514)
+.++++.+.+.+++..+|++..+|..+...+.+.++.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999999998888555
No 194
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.79 E-value=9e-05 Score=70.88 Aligned_cols=149 Identities=10% Similarity=-0.011 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 040365 177 MFIASSLLDMYAKCGNIRLARCIFDKMD--LHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACS 254 (514)
Q Consensus 177 ~~~~~~li~~y~k~g~~~~A~~~~~~m~--~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 254 (514)
...+..+...|.+.|++++|...|++.. .|+.. .+...|+.+++...+. ...|..+..++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-------~~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-------MFQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-------HHTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-------hhhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 4557778889999999999999999865 22222 1223344444433221 136677777888
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHH-HHhcCCHHHH
Q 040365 255 HAGLIDKAWSYFNSMTKDYGIAP-SFEHYAAVADLLGRAGKLQEAYEFISNMH-AGP-TENVWLTLLSA-CRVHKNVELA 330 (514)
Q Consensus 255 ~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~-~~~~~~~~~a 330 (514)
+.|++++|+..++...+. .| +...|..+..+|...|++++|.+.|++.. ..| +...+..|... ....+..+.+
T Consensus 242 ~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTE---EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp TTTCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888887653 45 57788888888888899999988888864 334 34455555544 3445667788
Q ss_pred HHHHHHHHhcCCCCc
Q 040365 331 GKVAEKIFMIDPNNM 345 (514)
Q Consensus 331 ~~~~~~~~~~~p~~~ 345 (514)
...+++++...|.++
T Consensus 319 ~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 319 KEMYKGIFKGKDEGG 333 (338)
T ss_dssp ---------------
T ss_pred HHHHHHhhCCCCCCC
Confidence 888888888887654
No 195
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.75 E-value=0.0002 Score=53.04 Aligned_cols=81 Identities=21% Similarity=0.245 Sum_probs=64.3
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 040365 279 FEHYAAVADLLGRAGKLQEAYEFISNMH--AGPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYA 356 (514)
Q Consensus 279 ~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 356 (514)
...+..+...+.+.|++++|.+.+++.. .+.+..+|..+..++...|++++|...++++++.+|.++..+..+..++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4566667777788888888888877652 23467788888889999999999999999999999998888888888876
Q ss_pred Hcc
Q 040365 357 AAR 359 (514)
Q Consensus 357 ~~g 359 (514)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 196
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.67 E-value=0.00056 Score=68.28 Aligned_cols=85 Identities=9% Similarity=-0.007 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHH
Q 040365 244 VAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAP-SFEHYAAVADLLGRAGKLQEAYEFISNMH-AGP-TENVWLTLLSA 320 (514)
Q Consensus 244 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~ 320 (514)
..|..+..++.+.|++++|+..++...+. .| +...|..+..+|...|++++|...|++.. ..| +...|..+..+
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 394 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGL---DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMC 394 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34444444555555555555555544432 22 34445555555555555555555555432 222 23344445555
Q ss_pred HHhcCCHHHHH
Q 040365 321 CRVHKNVELAG 331 (514)
Q Consensus 321 ~~~~~~~~~a~ 331 (514)
+...++.+++.
T Consensus 395 ~~~~~~~~~a~ 405 (457)
T 1kt0_A 395 QKKAKEHNERD 405 (457)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555554443
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.65 E-value=0.00018 Score=56.35 Aligned_cols=77 Identities=17% Similarity=0.056 Sum_probs=62.6
Q ss_pred HHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHhC
Q 040365 298 AYEFISNM-HAG-PTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRNK 374 (514)
Q Consensus 298 A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 374 (514)
|.+.+++. ... .+...|..+...+...|++++|+..++++++.+|.++..|..++.+|...|++++|...+++..+.
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44555543 222 467788888888999999999999999999999998889999999999999999999999887653
No 198
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.64 E-value=0.00038 Score=67.35 Aligned_cols=113 Identities=9% Similarity=-0.007 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 040365 244 VAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISNMHAGPTENVWLTLLSACRV 323 (514)
Q Consensus 244 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~ 323 (514)
..+..+...+.+.|++++|...|+...+.. |.. ......+++.+ . .+.+..+|..+..++..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~----------~~~~~~~~~~~----~-~~~~~~~~~nla~~~~~ 285 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGS----------RAAAEDADGAK----L-QPVALSCVLNIGACKLK 285 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHH----------HHHSCHHHHGG----G-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcC----------ccccChHHHHH----H-HHHHHHHHHHHHHHHHh
Confidence 345566666667777777777776664320 000 00001111110 0 01245788999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHhC
Q 040365 324 HKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRNK 374 (514)
Q Consensus 324 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 374 (514)
.|++++|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 286 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 286 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999988764
No 199
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.54 E-value=0.00012 Score=60.50 Aligned_cols=85 Identities=13% Similarity=0.037 Sum_probs=64.5
Q ss_pred hcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHc
Q 040365 291 RAGKLQEAYEFISNMH--AGPTENVWLTLLSACRVHKN----------VELAGKVAEKIFMIDPNNMGAYVILSNTYAAA 358 (514)
Q Consensus 291 ~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 358 (514)
|.+.+++|.+.++... .+.+...|..+..++...++ +++|+..|+++++++|++..+|..+.++|.+.
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 4455666666665542 22355666666666665554 56999999999999999999999999999987
Q ss_pred c-----------ChhHHHHHHHHHHhCC
Q 040365 359 R-----------RWKDAASLRVFMRNKG 375 (514)
Q Consensus 359 g-----------~~~~a~~~~~~m~~~g 375 (514)
| ++++|.+.|++..+..
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 5 8999999999887653
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.42 E-value=0.00057 Score=52.63 Aligned_cols=66 Identities=8% Similarity=-0.105 Sum_probs=61.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHhCC
Q 040365 310 TENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRNKG 375 (514)
Q Consensus 310 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 375 (514)
+...|..+...+...|++++|+..++++++.+|.++..+..++.+|...|++++|.+.+++..+..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 566788899999999999999999999999999999999999999999999999999999987653
No 201
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.39 E-value=0.0012 Score=49.44 Aligned_cols=70 Identities=13% Similarity=0.156 Sum_probs=60.7
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHhCCCc
Q 040365 308 GPTENVWLTLLSACRVHKN---VELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRNKGMK 377 (514)
Q Consensus 308 ~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 377 (514)
++|...+..+..++...++ .++|..+++++++.+|+++.+...+...+.+.|++++|...++++.+..-.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3567788888888765555 799999999999999999999999999999999999999999999886543
No 202
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.36 E-value=0.0028 Score=51.43 Aligned_cols=109 Identities=16% Similarity=0.065 Sum_probs=50.6
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHh----cCCHHHH
Q 040365 223 NAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGR----AGKLQEA 298 (514)
Q Consensus 223 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A 298 (514)
++++|+++|++..+.| .|+.. +...|...+.+++|..+|+...+. -++..+..|..+|.. .+++++|
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHHH
Confidence 4556666666666554 22322 444444455555555555555332 233444444444444 4444555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhc
Q 040365 299 YEFISNMHAGPTENVWLTLLSACRV----HKNVELAGKVAEKIFMI 340 (514)
Q Consensus 299 ~~~~~~m~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~ 340 (514)
.++|++.-...+...+..|...|.. .+|.++|...+++..+.
T Consensus 81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 4444443322334444444444444 34444444444444433
No 203
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.31 E-value=0.0007 Score=67.77 Aligned_cols=119 Identities=8% Similarity=-0.045 Sum_probs=69.2
Q ss_pred ccCChHHHHHHHHHHHHc-----C-CCC-cHHHHHHHHHHHHhcCCHHHHHHHHHhCC----------CCC-hhHHHHHH
Q 040365 154 HLTTLHLGKQLHGCIIRN-----G-FDD-NMFIASSLLDMYAKCGNIRLARCIFDKMD----------LHD-IVSWTAVI 215 (514)
Q Consensus 154 ~~~~~~~a~~~~~~~~~~-----~-~~~-~~~~~~~li~~y~k~g~~~~A~~~~~~m~----------~~d-~~~~~~li 215 (514)
..|++++|..++.+.++. | -.| ...+++.|...|...|++++|..++++.. .|+ ..+++.|.
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 400 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG 400 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 445555555555555432 1 011 23456666666666666666666665542 122 24677777
Q ss_pred HHHHhCCChHHHHHHHHHHHH-----cCC-CCCH-HHHHHHHHHHHccCCHHHHHHHHHHhHHh
Q 040365 216 MGNALHGNAHDAISLFEQMEK-----DGV-KPNS-VAFVAVLTACSHAGLIDKAWSYFNSMTKD 272 (514)
Q Consensus 216 ~~~~~~g~~~~A~~l~~~m~~-----~g~-~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 272 (514)
..|...|++++|+.++++... .|. .|+. .+...+-.++...+.+++|...+..+.+.
T Consensus 401 ~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 401 LTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777776543 121 2332 23445555666777888888888877654
No 204
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.22 E-value=0.0006 Score=56.32 Aligned_cols=51 Identities=20% Similarity=0.238 Sum_probs=36.3
Q ss_pred HHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhcCCCCc
Q 040365 295 LQEAYEFISNMH-AGP-TENVWLTLLSACRVH-----------KNVELAGKVAEKIFMIDPNNM 345 (514)
Q Consensus 295 ~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~-----------~~~~~a~~~~~~~~~~~p~~~ 345 (514)
+++|+..|++.. ..| +..+|..+..+|... |++++|+..|+++++++|++.
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 346666666542 223 455666677776655 589999999999999999875
No 205
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.21 E-value=0.0068 Score=49.11 Aligned_cols=113 Identities=15% Similarity=0.036 Sum_probs=91.8
Q ss_pred CCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 040365 257 GLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISNMHAGPTENVWLTLLSACRV----HKNVELAGK 332 (514)
Q Consensus 257 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~~~~~~a~~ 332 (514)
++.++|..+|+...+. | .|... |..+|...+.+++|.++|++.-...+...+..|...|.. .+|+++|..
T Consensus 9 ~d~~~A~~~~~~aa~~-g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL-N-EMFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHT-T-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcC-C-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 4678899999888653 4 33332 777788888899999999887656788888888888887 889999999
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHH----ccChhHHHHHHHHHHhCCCc
Q 040365 333 VAEKIFMIDPNNMGAYVILSNTYAA----ARRWKDAASLRVFMRNKGMK 377 (514)
Q Consensus 333 ~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~~ 377 (514)
.+++..+. .++.++..|..+|.. .+++++|.+.+++..+.|..
T Consensus 83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 99998877 456788899999998 88999999999998888753
No 206
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.19 E-value=0.0026 Score=49.50 Aligned_cols=65 Identities=8% Similarity=-0.020 Sum_probs=42.3
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 040365 278 SFEHYAAVADLLGRAGKLQEAYEFISNMH--AGPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDP 342 (514)
Q Consensus 278 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 342 (514)
+...+..+...|.+.|++++|.+.+++.. .+.+...|..+..++...|++++|...+++++++.|
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 84 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQ 84 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 45556666666666666666666666542 223456677777777777777777777777776655
No 207
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.17 E-value=0.016 Score=59.32 Aligned_cols=148 Identities=10% Similarity=0.046 Sum_probs=118.5
Q ss_pred CCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCC----------HHHHHHHHHHhHHhcCCCC-CHhHHHHHHHH
Q 040365 221 HGNAHDAISLFEQMEKDGVKPNS-VAFVAVLTACSHAGL----------IDKAWSYFNSMTKDYGIAP-SFEHYAAVADL 288 (514)
Q Consensus 221 ~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~----------~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~ 288 (514)
....++|++.++++... .|+. ..|+.--.++.+.|+ ++++...++.+.+. .| +...|..-.-+
T Consensus 42 ~~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~---~pK~y~aW~hR~w~ 116 (567)
T 1dce_A 42 GELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV---NPKSYGTWHHRCWL 116 (567)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHH
Confidence 34467889999999985 5654 445555555555566 89999999999765 45 67777777777
Q ss_pred HHhcC--CHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHc-----
Q 040365 289 LGRAG--KLQEAYEFISNMH--AGPTENVWLTLLSACRVHK-NVELAGKVAEKIFMIDPNNMGAYVILSNTYAAA----- 358 (514)
Q Consensus 289 ~~~~g--~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~----- 358 (514)
+.+.| ++++++++++++. ...|...|+.-..+....| .++++.+.++++++.+|.|..+|.....++.+.
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCC
T ss_pred HHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccc
Confidence 88889 7799999999874 3458889999888888888 899999999999999999999999988888774
Q ss_pred ---------cChhHHHHHHHHHHh
Q 040365 359 ---------RRWKDAASLRVFMRN 373 (514)
Q Consensus 359 ---------g~~~~a~~~~~~m~~ 373 (514)
++++++.+.++....
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHH
T ss_pred ccccccccHHHHHHHHHHHHHHHh
Confidence 567888888877654
No 208
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.16 E-value=0.0021 Score=47.23 Aligned_cols=82 Identities=15% Similarity=0.111 Sum_probs=53.8
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 040365 5 DLVSWNTVIVGLARNGLYEEALNIVRQMGNVNLKPDSFTLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSSLIN 84 (514)
Q Consensus 5 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 84 (514)
+...|..+...+.+.|++++|+..|++..... +.+...+..+...+...|++++|...+..+++.. +.+..++..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 34566777777777778888887777776643 2345566666677777777777777777777664 444555555555
Q ss_pred HHHH
Q 040365 85 MYAK 88 (514)
Q Consensus 85 ~~~~ 88 (514)
.+.+
T Consensus 86 ~~~~ 89 (91)
T 1na3_A 86 AKQK 89 (91)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5543
No 209
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.14 E-value=0.0012 Score=64.95 Aligned_cols=116 Identities=9% Similarity=-0.042 Sum_probs=85.2
Q ss_pred HHHHHhcCCHHHHHHHHHhCC---------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCC---cch
Q 040365 286 ADLLGRAGKLQEAYEFISNMH---------AGPT-ENVWLTLLSACRVHKNVELAGKVAEKIFMI-----DPNN---MGA 347 (514)
Q Consensus 286 i~~~~~~g~~~~A~~~~~~m~---------~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~p~~---~~~ 347 (514)
+..+.+.|++++|++++++.. ..|+ ..+++.|..+|...|++++|+.+++++++. +|+. ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 445667788888888887642 1122 357888999999999999999999988763 3443 457
Q ss_pred HHHHHHHHHHccChhHHHHHHHHHHhCCCccCCcccEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHH
Q 040365 348 YVILSNTYAAARRWKDAASLRVFMRNKGMKKTPACSWIEVKNKAYAFVAGDKSHPFYHRINEALKELLERME 419 (514)
Q Consensus 348 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~ 419 (514)
++.|+..|...|++++|..++++..+--.. .-...||...++...|.+...+|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRV------------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH------------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 888999999999999999999887642110 001348988888888877777765
No 210
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.06 E-value=0.02 Score=61.39 Aligned_cols=153 Identities=14% Similarity=0.125 Sum_probs=101.0
Q ss_pred HHhcCChhHHHH-HHHHHhhCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHCCCHHH
Q 040365 16 LARNGLYEEALN-IVRQMGNVNLKPDSFTLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSSLINMYAKCARVED 94 (514)
Q Consensus 16 ~~~~g~~~~A~~-l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 94 (514)
....+++++|.+ ++..+ |+......++..+.+.|..+.|.++.+. . ..-......+|++++
T Consensus 609 ~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~---~~~f~~~l~~~~~~~ 670 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPD---------Q---DQKFELALKVGQLTL 670 (814)
T ss_dssp HHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCC---------H---HHHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCC---------c---chheehhhhcCCHHH
Confidence 345778888876 44221 2122336677777788888887765531 1 122445677899999
Q ss_pred HHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCC
Q 040365 95 SHRLFCLLPVKDAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLGKQLHGCIIRNGFD 174 (514)
Q Consensus 95 A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 174 (514)
|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...++.+...++-+.....|
T Consensus 671 A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~-- 737 (814)
T 3mkq_A 671 ARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG-- 737 (814)
T ss_dssp HHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT--
T ss_pred HHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC--
Confidence 999988774 567899999999999999999999998743 3344445555777776666665555554
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 040365 175 DNMFIASSLLDMYAKCGNIRLARCIFDKM 203 (514)
Q Consensus 175 ~~~~~~~~li~~y~k~g~~~~A~~~~~~m 203 (514)
-++.-..+|.++|++++|.+++.++
T Consensus 738 ----~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 738 ----KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp ----CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred ----chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 1233444566777777777665443
No 211
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.84 E-value=0.032 Score=59.69 Aligned_cols=42 Identities=12% Similarity=0.060 Sum_probs=21.8
Q ss_pred HHCCCHHHHHH-HHccCCCCChhHHHHHHHHHHHCCChhHHHHHH
Q 040365 87 AKCARVEDSHR-LFCLLPVKDAISWNSIIAGCVQNGLFDEGLKFF 130 (514)
Q Consensus 87 ~~~g~~~~A~~-~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~ 130 (514)
...+++++|.+ ++..++. ......++..+.+.|.+++|+++.
T Consensus 610 ~~~~~~~~a~~~~l~~i~~--~~~~~~~~~~l~~~~~~~~a~~~~ 652 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNVEG--KDSLTKIARFLEGQEYYEEALNIS 652 (814)
T ss_dssp HHTTCHHHHHHHTGGGCCC--HHHHHHHHHHHHHTTCHHHHHHHC
T ss_pred HHhCCHHHHHHHHHhcCCc--hHHHHHHHHHHHhCCChHHheecC
Confidence 34566666666 5544330 112255555566666666666544
No 212
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.83 E-value=0.0054 Score=46.42 Aligned_cols=61 Identities=16% Similarity=0.150 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHh
Q 040365 208 IVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSM 269 (514)
Q Consensus 208 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 269 (514)
...|..+...|.+.|++++|+..|++..+.. +.+...|..+..++...|++++|...|+..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444445555555555555555555554431 112334444555555555555555555544
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.79 E-value=0.0017 Score=63.96 Aligned_cols=83 Identities=12% Similarity=0.013 Sum_probs=65.4
Q ss_pred hcCCHHHHHHHHHhCC---------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCC---CcchHHHHH
Q 040365 291 RAGKLQEAYEFISNMH---------AGPT-ENVWLTLLSACRVHKNVELAGKVAEKIFMI-----DPN---NMGAYVILS 352 (514)
Q Consensus 291 ~~g~~~~A~~~~~~m~---------~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~p~---~~~~~~~l~ 352 (514)
..|++++|+.++++.. ..|+ ..+++.|..+|...|++++|+.+++++++. +|+ ...+|+.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3467888888776541 2233 357889999999999999999999998863 444 445788999
Q ss_pred HHHHHccChhHHHHHHHHHHh
Q 040365 353 NTYAAARRWKDAASLRVFMRN 373 (514)
Q Consensus 353 ~~~~~~g~~~~a~~~~~~m~~ 373 (514)
.+|...|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998764
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.77 E-value=0.0094 Score=44.61 Aligned_cols=64 Identities=11% Similarity=0.124 Sum_probs=50.1
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC-CC-CCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchH
Q 040365 285 VADLLGRAGKLQEAYEFISNMH-AG-PTEN-VWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAY 348 (514)
Q Consensus 285 li~~~~~~g~~~~A~~~~~~m~-~~-p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 348 (514)
....+.+.|++++|.+.+++.. .. .+.. .|..+..++...|++++|...++++++++|+++.++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 3455677788888888887753 22 3566 788888888999999999999999999999887766
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.69 E-value=0.0051 Score=46.14 Aligned_cols=59 Identities=17% Similarity=0.241 Sum_probs=54.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCcc-hHHHHHHHHHHccChhHHHHHHHHHHhCC
Q 040365 317 LLSACRVHKNVELAGKVAEKIFMIDPNNMG-AYVILSNTYAAARRWKDAASLRVFMRNKG 375 (514)
Q Consensus 317 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 375 (514)
....+...|++++|...++++++.+|.++. .+..++.+|...|++++|.+.+++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 455678899999999999999999999999 99999999999999999999999987654
No 216
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.67 E-value=0.16 Score=39.91 Aligned_cols=140 Identities=11% Similarity=0.121 Sum_probs=97.8
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHH
Q 040365 219 ALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEA 298 (514)
Q Consensus 219 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 298 (514)
...|..++..++..+.... .+..-|+.++--....-+-+-..+.++.+-+-+.+ ..+|++...
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHHH
Confidence 4467777777777776653 24455666665555555555566666665433322 245555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHhCCCc
Q 040365 299 YEFISNMHAGPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRNKGMK 377 (514)
Q Consensus 299 ~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 377 (514)
..-+-.+. .+.......++.....|+.+.-..+...++..+|.++....-++++|.+.|+..+|.+++.+.-++|++
T Consensus 81 i~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 55554443 344455667788889999999999999977777888999999999999999999999999999999985
No 217
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.65 E-value=0.014 Score=57.39 Aligned_cols=93 Identities=9% Similarity=-0.002 Sum_probs=68.8
Q ss_pred ccCCHHHHHHHHHHhHHhcC--CCC----CHhHHHHHHHHHHhcCCHHHHHHHHHhCC---------CCCCH-HHHHHHH
Q 040365 255 HAGLIDKAWSYFNSMTKDYG--IAP----SFEHYAAVADLLGRAGKLQEAYEFISNMH---------AGPTE-NVWLTLL 318 (514)
Q Consensus 255 ~~g~~~~a~~~~~~m~~~~~--~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~---------~~p~~-~~~~~ll 318 (514)
+.|++++|..++++..+... +.| ...+++.|..+|...|++++|+.++++.. ..|+. .+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 45778888888877654321 222 24678888888999999999988887652 23544 5688999
Q ss_pred HHHHhcCCHHHHHHHHHHHHh-----cCCCCcch
Q 040365 319 SACRVHKNVELAGKVAEKIFM-----IDPNNMGA 347 (514)
Q Consensus 319 ~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~ 347 (514)
..|...|++++|+.+++++++ ++|+.+.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 999999999999999999876 35776543
No 218
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.59 E-value=0.014 Score=47.53 Aligned_cols=66 Identities=6% Similarity=-0.035 Sum_probs=45.5
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcC-C-CCcchHHHHHHHHHHccChhHHHHHHHHHHhC
Q 040365 309 PTENVWLTLLSACRVHK---NVELAGKVAEKIFMID-P-NNMGAYVILSNTYAAARRWKDAASLRVFMRNK 374 (514)
Q Consensus 309 p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 374 (514)
++..+.-.+..++.+.+ +.++|+.+++.+.+.+ | .+...+..|+-+|.+.|++++|.+.++.+.+.
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 56666666666777766 5557777777777766 5 34556667777777777777777777777653
No 219
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.55 E-value=0.025 Score=55.54 Aligned_cols=100 Identities=9% Similarity=-0.035 Sum_probs=71.0
Q ss_pred HHHHHccCCHHHHHHHHHHhHHhcC--CCC----CHhHHHHHHHHHHhcCCHHHHHHHHHhCC---------CCCCH-HH
Q 040365 250 LTACSHAGLIDKAWSYFNSMTKDYG--IAP----SFEHYAAVADLLGRAGKLQEAYEFISNMH---------AGPTE-NV 313 (514)
Q Consensus 250 l~a~~~~g~~~~a~~~~~~m~~~~~--~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~---------~~p~~-~~ 313 (514)
+..+...|++++|..++++...... +.| ...+++.|...|...|++++|+.++++.. ..|+. .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 4455567788888888877754321 222 24667788888888888888888877642 23443 56
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCcchHH
Q 040365 314 WLTLLSACRVHKNVELAGKVAEKIFM-----IDPNNMGAYV 349 (514)
Q Consensus 314 ~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~~~ 349 (514)
++.|...|...|++++|+.+++++++ ++|+.+.+-.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 88899999999999999999998876 4677664443
No 220
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.49 E-value=0.1 Score=49.38 Aligned_cols=47 Identities=17% Similarity=0.133 Sum_probs=29.0
Q ss_pred CCChhHHHHHHHHHHh--CC---ChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHH
Q 040365 205 LHDIVSWTAVIMGNAL--HG---NAHDAISLFEQMEKDGVKPNS-VAFVAVLTAC 253 (514)
Q Consensus 205 ~~d~~~~~~li~~~~~--~g---~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~ 253 (514)
..+..+|...+.+... .+ ...+|..+|++..+. .|+- ..+..+..++
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~ 243 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVD 243 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 4467778877766432 33 357889999998884 6663 3444333333
No 221
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.09 E-value=0.14 Score=48.56 Aligned_cols=61 Identities=7% Similarity=0.047 Sum_probs=31.3
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHh
Q 040365 207 DIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSM 269 (514)
Q Consensus 207 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 269 (514)
+...|.++...+...|++++|+..+++....+ |+...|..+...+.-.|++++|.+.|++.
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~A 336 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTA 336 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 44444444444444455555555555555542 45444444445555555555555555544
No 222
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.85 E-value=0.34 Score=40.44 Aligned_cols=105 Identities=11% Similarity=0.119 Sum_probs=70.5
Q ss_pred HHHHHHCCCHHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHH
Q 040365 83 INMYAKCARVEDSHRLFCLLPVKDAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLGK 162 (514)
Q Consensus 83 i~~~~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 162 (514)
.+....+|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|.+... +..+.-.|.-.|+.+.-.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 34456788888888887766 3567899999999999999999888887643 334444455567776666
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 040365 163 QLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMD 204 (514)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~ 204 (514)
.+-......| . ++.-...+.-.|+++++.++|.+..
T Consensus 81 kla~iA~~~g-~-----~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 81 KMQNIAQTRE-D-----FGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHHTT-C-----HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHCc-c-----HHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 6655555554 1 2333444556677777777776554
No 223
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.73 E-value=0.11 Score=38.51 Aligned_cols=77 Identities=13% Similarity=-0.041 Sum_probs=56.5
Q ss_pred CCHhHHHHHHHHHHhcCC---HHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 040365 277 PSFEHYAAVADLLGRAGK---LQEAYEFISNMH--AGPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVIL 351 (514)
Q Consensus 277 p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 351 (514)
+++..+..+..++...++ .++|..++++.. .+.++..+..+...+.+.|+++.|+..|+++++.+|++ .....+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~-~~~~~i 82 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN-LDRVTI 82 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT-CCHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-ccHHHH
Confidence 466777777777765544 688888888763 33467778888888999999999999999999999883 334444
Q ss_pred HHH
Q 040365 352 SNT 354 (514)
Q Consensus 352 ~~~ 354 (514)
...
T Consensus 83 ~~~ 85 (93)
T 3bee_A 83 IES 85 (93)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 224
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.71 E-value=0.074 Score=40.37 Aligned_cols=74 Identities=14% Similarity=0.063 Sum_probs=53.2
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHhCC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchH
Q 040365 278 SFEHYAAVADLLGRAGKLQEAYEFISNMH---------AGPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAY 348 (514)
Q Consensus 278 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~---------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 348 (514)
+..-+..|...+.+.|+++.|...++... ..+...++..|..++.+.|+++.|...++++++++|++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 33444556666666666666666665531 123467788999999999999999999999999999987664
Q ss_pred HHH
Q 040365 349 VIL 351 (514)
Q Consensus 349 ~~l 351 (514)
..+
T Consensus 84 ~n~ 86 (104)
T 2v5f_A 84 GNL 86 (104)
T ss_dssp HHH
T ss_pred hhH
Confidence 443
No 225
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.59 E-value=0.34 Score=40.48 Aligned_cols=129 Identities=16% Similarity=0.157 Sum_probs=76.7
Q ss_pred HHHHhcCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 040365 185 DMYAKCGNIRLARCIFDKMDLHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWS 264 (514)
Q Consensus 185 ~~y~k~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 264 (514)
+...++|+++.|.++.+.+ .+...|..+......+|+++-|.+.|.+... |..+.-.|.-.|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 4456778888888877766 4566788888888888888888888877542 3334444555666655444
Q ss_pred HHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040365 265 YFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISNMHAGPTENVWLTLLSACRVHKNVELAGKVAEKI 337 (514)
Q Consensus 265 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 337 (514)
+-+....+ | -++.-...+.-.|+++++.+++.+...-|... -....+|-.+.|.++.+.+
T Consensus 82 la~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 43333211 1 23444455666778888887777665222111 1123355566666665543
No 226
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.13 E-value=0.082 Score=48.05 Aligned_cols=87 Identities=10% Similarity=0.051 Sum_probs=68.7
Q ss_pred HHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCC-cchHHHHHHHHHHc-cChhH
Q 040365 295 LQEAYEFISNM-HAGPT---ENVWLTLLSACRV-----HKNVELAGKVAEKIFMIDPNN-MGAYVILSNTYAAA-RRWKD 363 (514)
Q Consensus 295 ~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 363 (514)
..+|...+++. ...|+ ...|..|...|.+ .|+.++|.+.|+++++++|+. ..+++..+..++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34555555554 23455 5678888888888 499999999999999999974 99999999999885 99999
Q ss_pred HHHHHHHHHhCCCccCCc
Q 040365 364 AASLRVFMRNKGMKKTPA 381 (514)
Q Consensus 364 a~~~~~~m~~~g~~~~~~ 381 (514)
+.+.+++.........|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999998877664453
No 227
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.52 E-value=0.19 Score=40.87 Aligned_cols=70 Identities=17% Similarity=0.106 Sum_probs=46.5
Q ss_pred CCHhHHHHHHHHHHhcC---CHHHHHHHHHhCC-CC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 040365 277 PSFEHYAAVADLLGRAG---KLQEAYEFISNMH-AG-P--TENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMG 346 (514)
Q Consensus 277 p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~-~~-p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 346 (514)
++..+...+.-++.+++ +++++..++++.- .. | +...+..|.-++.+.|++++|.+.++.+++.+|++.-
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~Q 106 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQ 106 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH
Confidence 34444445555555555 3445555555432 11 3 2455667778889999999999999999999998753
No 228
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.50 E-value=0.25 Score=38.63 Aligned_cols=87 Identities=17% Similarity=0.036 Sum_probs=41.4
Q ss_pred CCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHH---HHHHHHhCCCC--C--CHHHHHHHHHHHHhcCCHHH
Q 040365 257 GLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQE---AYEFISNMHAG--P--TENVWLTLLSACRVHKNVEL 329 (514)
Q Consensus 257 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~--p--~~~~~~~ll~~~~~~~~~~~ 329 (514)
..+..+.+-|...... |. |+..+-..+.-++.++....+ +..++++.-.. | .......|.-++.+.|+++.
T Consensus 15 ~~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 3344444444443222 21 444444455555555554444 55555554311 2 11223334445555666666
Q ss_pred HHHHHHHHHhcCCCCc
Q 040365 330 AGKVAEKIFMIDPNNM 345 (514)
Q Consensus 330 a~~~~~~~~~~~p~~~ 345 (514)
|.+.++.+++.+|+|.
T Consensus 93 A~~~~~~lL~~eP~n~ 108 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNN 108 (126)
T ss_dssp HHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHhCCCCH
Confidence 6666666666665553
No 229
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=94.42 E-value=5.1 Score=40.97 Aligned_cols=309 Identities=7% Similarity=0.009 Sum_probs=158.9
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHh-CCCCchhHHHHHHHHHHHCCCHHH
Q 040365 16 LARNGLYEEALNIVRQMGNVNLKPDSFTLSSVLPIFADYVDVIKGKEIHGYAIRH-GLDANVCIGSSLINMYAKCARVED 94 (514)
Q Consensus 16 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~ 94 (514)
..+.|++..+..+...+...-+. .-..|..+...... .... ++-..+.+. |.+.....-+.-+..+++.+++..
T Consensus 16 a~~~~~~~~~~~l~~~l~~~pL~-~yl~y~~l~~~l~~-~~~~---ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~ 90 (618)
T 1qsa_A 16 AWDNRQMDVVEQMMPGLKDYPLY-PYLEYRQITDDLMN-QPAV---TVTNFVRANPTLPPARTLQSRFVNELARREDWRG 90 (618)
T ss_dssp HHHTTCHHHHHHHSGGGTTSTTH-HHHHHHHHHHTGGG-CCHH---HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHCCCHHHHHHHHHhhcCCCcH-HHHHHHHHHhCccc-CCHH---HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHH
Confidence 34568888877776666433221 11234443332221 1233 444444443 223333444666777888999999
Q ss_pred HHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHH--HHHHHHHHHHcC
Q 040365 95 SHRLFCLLPVKDAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHL--GKQLHGCIIRNG 172 (514)
Q Consensus 95 A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~--a~~~~~~~~~~~ 172 (514)
....+.. +..+...-.....+....|+..+|....+.+-..| .........++..+.+.|.+.. ..+=+..+...|
T Consensus 91 ~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~ 168 (618)
T 1qsa_A 91 LLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAG 168 (618)
T ss_dssp HHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred HHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
Confidence 9998877 44455555567777888899888888777776655 3344556666766665554422 222222222222
Q ss_pred -----------CCCcH-HHHHHHHHHHHhcCCHHHHHHHHHhCCCCChhH---HHHHHHHHHhCCChHHHHHHHHHHHHc
Q 040365 173 -----------FDDNM-FIASSLLDMYAKCGNIRLARCIFDKMDLHDIVS---WTAVIMGNALHGNAHDAISLFEQMEKD 237 (514)
Q Consensus 173 -----------~~~~~-~~~~~li~~y~k~g~~~~A~~~~~~m~~~d~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~ 237 (514)
++++. .....++..+.+-..+ ....... .++... ...-+.-+++ .+.+.|..+|......
T Consensus 169 ~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~---~~~~~~~-~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~ 243 (618)
T 1qsa_A 169 NTGLVTVLAGQMPADYQTIASAIISLANNPNTV---LTFARTT-GATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQA 243 (618)
T ss_dssp CHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGH---HHHHHHS-CCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhH---HHHHhcc-CCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhc
Confidence 11111 1112222222221111 1111111 111111 1111222333 3778888888887654
Q ss_pred C-CCCCHH--HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-C-HH
Q 040365 238 G-VKPNSV--AFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISNMHAGP-T-EN 312 (514)
Q Consensus 238 g-~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p-~-~~ 312 (514)
+ +.+... ....+.......+...++...+...... .++.....-.+....+.|+++.|...|+.|+..+ + ..
T Consensus 244 ~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r 320 (618)
T 1qsa_A 244 QQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDE 320 (618)
T ss_dssp TTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHh
Confidence 3 222221 1222222333445244555555554322 2333333344444557799999999999887542 2 22
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040365 313 VWLTLLSACRVHKNVELAGKVAEKIFM 339 (514)
Q Consensus 313 ~~~~ll~~~~~~~~~~~a~~~~~~~~~ 339 (514)
-.-=+..+....|+.++|..+|+++..
T Consensus 321 ~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 321 WRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 222244567778999999999888865
No 230
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.35 E-value=0.039 Score=53.66 Aligned_cols=211 Identities=11% Similarity=0.133 Sum_probs=116.9
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 040365 6 LVSWNTVIVGLARNGLYEEALNIVRQMGNVNLKPDSFTLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSSLINM 85 (514)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 85 (514)
...|+.|..+..+.++..+|++.|-+. -|+..|..++.++.+.|.+++-...+..+.+. ..++.+=+.|+-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHH
Confidence 456777888888888777777655321 25556777888888888888777777666554 3344555678888
Q ss_pred HHHCCCHHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHC--------------------CCCCCHHHH
Q 040365 86 YAKCARVEDSHRLFCLLPVKDAISWNSIIAGCVQNGLFDEGLKFFRQMLIA--------------------KIKPRHVSF 145 (514)
Q Consensus 86 ~~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--------------------g~~p~~~t~ 145 (514)
|+|.+++.+-++++. .||+.-...+.+-|...|.++.|.-+|..+... .-.-+..||
T Consensus 126 yAk~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktW 202 (624)
T 3lvg_A 126 LAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTW 202 (624)
T ss_dssp HHTSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSH
T ss_pred HHhhCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHH
Confidence 888777665444332 233333333444444444444444333332110 001234455
Q ss_pred HHHHHHHhccCChH------------------------------HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHH
Q 040365 146 SSIMPACAHLTTLH------------------------------LGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRL 195 (514)
Q Consensus 146 ~~ll~~~~~~~~~~------------------------------~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~ 195 (514)
-.+-.+|...+.+. +-..+++.-+.. -.....+++-|.-.|+|-. .++
T Consensus 203 KeV~~ACvd~~EfrLAqicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY~-PeK 280 (624)
T 3lvg_A 203 KEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK-PQK 280 (624)
T ss_dssp HHHTHHHHHSCTTTTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSSC-TTH
T ss_pred HHHHHHHhCchHHHHHHHhcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhcC-HHH
Confidence 55555555544444 333333333211 1334567777777777753 333
Q ss_pred HHHHHHh----CCCC-------ChhHHHHHHHHHHhCCChHHHHH
Q 040365 196 ARCIFDK----MDLH-------DIVSWTAVIMGNALHGNAHDAIS 229 (514)
Q Consensus 196 A~~~~~~----m~~~-------d~~~~~~li~~~~~~g~~~~A~~ 229 (514)
-.+-++. +.-| ....|.-++-.|.+-.+++.|..
T Consensus 281 lmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 281 MREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 3333322 2222 34568888888888888887753
No 231
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.31 E-value=0.46 Score=49.66 Aligned_cols=54 Identities=13% Similarity=0.025 Sum_probs=50.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHH
Q 040365 319 SACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMR 372 (514)
Q Consensus 319 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 372 (514)
.-|...|+++.|+.+++++...-|.+..+|..|+.+|...|+|+.|+-.++.+.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 346788999999999999999999999999999999999999999999999884
No 232
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.25 E-value=0.39 Score=36.22 Aligned_cols=65 Identities=11% Similarity=-0.067 Sum_probs=54.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------CCCcchHHHHHHHHHHccChhHHHHHHHHHHhC
Q 040365 310 TENVWLTLLSACRVHKNVELAGKVAEKIFMID-------PNNMGAYVILSNTYAAARRWKDAASLRVFMRNK 374 (514)
Q Consensus 310 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 374 (514)
+..-...|...+...++++.|...++.+++.. +..+..+..|+.+|.+.|+++.|...+++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44456678889999999999999999998753 334567899999999999999999999988763
No 233
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.00 E-value=1.1 Score=43.19 Aligned_cols=69 Identities=14% Similarity=0.081 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHh-----CCCccCCc
Q 040365 313 VWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRN-----KGMKKTPA 381 (514)
Q Consensus 313 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~ 381 (514)
+...++.++...|+.+++...++.+...+|-+...|..|+.+|.+.|+..+|.+.|+...+ .|+.|.|.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 3455677888899999999999999999999999999999999999999999999988754 48887764
No 234
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=92.94 E-value=0.0016 Score=63.06 Aligned_cols=237 Identities=12% Similarity=0.129 Sum_probs=159.8
Q ss_pred chhHHHHHHHHHHHCCCHHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 040365 75 NVCIGSSLINMYAKCARVEDSHRLFCLLPVKDAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAH 154 (514)
Q Consensus 75 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 154 (514)
.+.+|..|..++.+.|++.+|.+-|-+ ..|+..|..+|....+.|.+++-+..+...++..-.| ..=+.++-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHHh
Confidence 456788888888888888888776643 4466678888898889999999888877665543333 333467888888
Q ss_pred cCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCC------------------------CCChhH
Q 040365 155 LTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMD------------------------LHDIVS 210 (514)
Q Consensus 155 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~------------------------~~d~~~ 210 (514)
.+++.+-++++. .||+.-...+.+-+...|.++.|.-+|..+. ..++.+
T Consensus 129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 888766554432 4666566677788888888888888887764 125678
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCC-CCHhHHHHHHHHH
Q 040365 211 WTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIA-PSFEHYAAVADLL 289 (514)
Q Consensus 211 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~-p~~~~~~~li~~~ 289 (514)
|-.+-.+|...+.+.-|.-.--.+. +.||. ...++..|...|-+++-+.+++.-. |++ .....|+-|.-+|
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniI---vhade--L~elv~~YE~~G~f~ELIsLlEagl---glErAHmGmFTELaILY 273 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIV---VHADE--LEELINYYQDRGYFEELITMLEAAL---GLERAHMGMFTELAILY 273 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHH---CCSSC--CSGGGSSSSTTCCCTTSTTTHHHHT---TSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCchHHHHHHHhcchhc---ccHHH--HHHHHHHHHhCCCHHHHHHHHHHHh---CCCchhHHHHHHHHHHH
Confidence 8888888888888776655444433 22221 2235566777788888887777543 443 3677788888777
Q ss_pred HhcCCHHHHHHHHHhCCCC----------CCHHHHHHHHHHHHhcCCHHHHH
Q 040365 290 GRAGKLQEAYEFISNMHAG----------PTENVWLTLLSACRVHKNVELAG 331 (514)
Q Consensus 290 ~~~g~~~~A~~~~~~m~~~----------p~~~~~~~ll~~~~~~~~~~~a~ 331 (514)
++- ++++.++.++..-.+ .....|.-|+-.|....+++.|.
T Consensus 274 sKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 274 SKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred Hhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 765 455555555443211 22345777777777777777664
No 235
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=92.19 E-value=3.5 Score=32.52 Aligned_cols=83 Identities=13% Similarity=-0.007 Sum_probs=58.4
Q ss_pred CCCHHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 040365 89 CARVEDSHRLFCLLPVKDAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLGKQLHGCI 168 (514)
Q Consensus 89 ~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 168 (514)
||++......+-.+. .+....+..++.....|.-++-.+++..+.. +.+|++.....+..||.+.|+..++.+++.++
T Consensus 74 C~NlKrVi~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~A 151 (172)
T 1wy6_A 74 CQNLKSVVECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEA 151 (172)
T ss_dssp CSCTHHHHHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcHHHHHHHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 455554444444432 3444566677788888888888888888544 34677888888888888888888888888888
Q ss_pred HHcCC
Q 040365 169 IRNGF 173 (514)
Q Consensus 169 ~~~~~ 173 (514)
-+.|+
T Consensus 152 C~kG~ 156 (172)
T 1wy6_A 152 CKKGE 156 (172)
T ss_dssp HHTTC
T ss_pred HHhhh
Confidence 88775
No 236
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=91.92 E-value=4 Score=32.51 Aligned_cols=65 Identities=9% Similarity=-0.033 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCc-chHHHHHHHHHHccChhHHHHHHHHHHh
Q 040365 309 PTENVWLTLLSACRVHKN---VELAGKVAEKIFMIDPNNM-GAYVILSNTYAAARRWKDAASLRVFMRN 373 (514)
Q Consensus 309 p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 373 (514)
|+..+--.+..++.+..+ ..+++.+++.+...+|.+. .....|+-+|.+.|++++|++..+.+.+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 444444444444444432 3455666666665555332 2334556666666666666666666654
No 237
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=91.32 E-value=2.1 Score=34.43 Aligned_cols=99 Identities=14% Similarity=0.211 Sum_probs=62.3
Q ss_pred CCCCCcchHHHHHHHHHhcCCh------hHHHHHHHHHhhCCCCCChh----hHHHHHHHH---hCCCChHHHHHHHHHH
Q 040365 1 MPVSDLVSWNTVIVGLARNGLY------EEALNIVRQMGNVNLKPDSF----TLSSVLPIF---ADYVDVIKGKEIHGYA 67 (514)
Q Consensus 1 m~~~~~~~~~~li~~~~~~g~~------~~A~~l~~~m~~~g~~p~~~----t~~~ll~~~---~~~~~~~~a~~~~~~~ 67 (514)
|...|..+|-..+.-.-+.|++ ++.+++|++.... ++|+.. .|.-+.--| ...+++++|+++|..+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3456788898888888888998 7888888887763 566531 122111111 1236777788888877
Q ss_pred HHhCCCCchhHHHHHHHHHHHCCCHHHHHHHHcc
Q 040365 68 IRHGLDANVCIGSSLINMYAKCARVEDSHRLFCL 101 (514)
Q Consensus 68 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~ 101 (514)
++.+ ..=..+|......=.+.|+++.|++++..
T Consensus 87 ~~~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~ 119 (161)
T 4h7y_A 87 RANC-KKFAFVHISFAQFELSQGNVKKSKQLLQK 119 (161)
T ss_dssp HHHC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHh-HHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 7653 22255666666666667777777776654
No 238
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=91.21 E-value=3.6 Score=32.09 Aligned_cols=80 Identities=8% Similarity=-0.006 Sum_probs=46.0
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH---HHHHHHHhHHhcCCCC--CHhHHHHHHHHHHhcCCHHH
Q 040365 223 NAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDK---AWSYFNSMTKDYGIAP--SFEHYAAVADLLGRAGKLQE 297 (514)
Q Consensus 223 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~---a~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~g~~~~ 297 (514)
....+.+-|.+....|. |+..+-..+..++.++..... ++.++..+.+. -.| .....-.|.-++.+.|++++
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~--~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK--GSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT--SCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHhhhHHH
Confidence 34445555555544443 555555556666666665544 77777766543 123 22333345556777777777
Q ss_pred HHHHHHhC
Q 040365 298 AYEFISNM 305 (514)
Q Consensus 298 A~~~~~~m 305 (514)
|.+.++.+
T Consensus 93 A~~~~~~l 100 (126)
T 1nzn_A 93 ALKYVRGL 100 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777765
No 239
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=90.97 E-value=11 Score=40.46 Aligned_cols=20 Identities=20% Similarity=0.112 Sum_probs=10.4
Q ss_pred HHHhCCChHHHHHHHHHHHH
Q 040365 217 GNALHGNAHDAISLFEQMEK 236 (514)
Q Consensus 217 ~~~~~g~~~~A~~l~~~m~~ 236 (514)
+|+-.|+......+++.+..
T Consensus 569 AyaGTGn~~aIq~LL~~~~~ 588 (963)
T 4ady_A 569 AYAGTGNNSAVKRLLHVAVS 588 (963)
T ss_dssp HTTTSCCHHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHhcc
Confidence 34455555444445555554
No 240
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=90.26 E-value=3.7 Score=30.23 Aligned_cols=87 Identities=15% Similarity=0.120 Sum_probs=63.4
Q ss_pred CChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHH
Q 040365 156 TTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMDLHDIVSWTAVIMGNALHGNAHDAISLFEQME 235 (514)
Q Consensus 156 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~ 235 (514)
...++|..|-+.+...+. ...+--.-+..+...|++++|..+.+....||+.+|-++-. .+.|..+++..-+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 356778888777777653 33333334556778999999999999999999999988765 46688888887777777
Q ss_pred HcCCCCCHHHHH
Q 040365 236 KDGVKPNSVAFV 247 (514)
Q Consensus 236 ~~g~~p~~~t~~ 247 (514)
.+| .|....|.
T Consensus 97 ~sg-~p~~q~Fa 107 (116)
T 2p58_C 97 RSQ-DPRIQTFV 107 (116)
T ss_dssp TCC-CHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 765 55555554
No 241
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=90.15 E-value=4.3 Score=29.84 Aligned_cols=89 Identities=13% Similarity=0.027 Sum_probs=65.1
Q ss_pred CCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHCCCHHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHH
Q 040365 54 YVDVIKGKEIHGYAIRHGLDANVCIGSSLINMYAKCARVEDSHRLFCLLPVKDAISWNSIIAGCVQNGLFDEGLKFFRQM 133 (514)
Q Consensus 54 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m 133 (514)
....++|.-+-+.+...|- ...+--.-+..+...|++++|..+.+....||.+.|-+|-.. +.|..+++..-+.++
T Consensus 19 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~l 94 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGL 94 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHH
Confidence 3456778777777776653 333333334556789999999999999999999999887654 788888888888788
Q ss_pred HHCCCCCCHHHHHH
Q 040365 134 LIAKIKPRHVSFSS 147 (514)
Q Consensus 134 ~~~g~~p~~~t~~~ 147 (514)
...| .|....|..
T Consensus 95 a~sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 95 GGSS-DPALADFAA 107 (115)
T ss_dssp HTCS-SHHHHHHHH
T ss_pred HhCC-CHHHHHHHH
Confidence 7776 565555543
No 242
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=89.90 E-value=3.7 Score=33.04 Aligned_cols=38 Identities=16% Similarity=0.310 Sum_probs=27.9
Q ss_pred CCChhHHHHHHHHHHHCCCh------hHHHHHHHHHHHCCCCCCH
Q 040365 104 VKDAISWNSIIAGCVQNGLF------DEGLKFFRQMLIAKIKPRH 142 (514)
Q Consensus 104 ~~d~~~~~~li~~~~~~g~~------~~A~~l~~~m~~~g~~p~~ 142 (514)
..|..+|=..+...-+.|++ ++..++|++.... ++|+.
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k 53 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDK 53 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccc
Confidence 45777887777777777888 7778888877664 56653
No 243
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=89.89 E-value=3.5 Score=30.32 Aligned_cols=88 Identities=13% Similarity=0.037 Sum_probs=64.8
Q ss_pred CChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHH
Q 040365 156 TTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMDLHDIVSWTAVIMGNALHGNAHDAISLFEQME 235 (514)
Q Consensus 156 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~ 235 (514)
...++|..|-+.+...+. ...+--.-+..+...|++++|..+.+....||+.+|-++-. .+.|..+++..-+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 346778888777777653 33333334556778999999999999999999999988755 46788888888887887
Q ss_pred HcCCCCCHHHHHH
Q 040365 236 KDGVKPNSVAFVA 248 (514)
Q Consensus 236 ~~g~~p~~~t~~~ 248 (514)
.+| .|....|..
T Consensus 96 ~sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 96 GSS-DPALADFAA 107 (115)
T ss_dssp TCS-SHHHHHHHH
T ss_pred hCC-CHHHHHHHH
Confidence 776 555555543
No 244
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=89.86 E-value=4.6 Score=29.74 Aligned_cols=89 Identities=11% Similarity=0.041 Sum_probs=64.3
Q ss_pred CCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHCCCHHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHH
Q 040365 54 YVDVIKGKEIHGYAIRHGLDANVCIGSSLINMYAKCARVEDSHRLFCLLPVKDAISWNSIIAGCVQNGLFDEGLKFFRQM 133 (514)
Q Consensus 54 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m 133 (514)
....++|.-+-+.+...|- ...+--.-+..+...|++++|..+.+....||.+.|-+|-.. +.|..+++..-+.++
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~l 95 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRL 95 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHH
Confidence 3456778777777776653 333333334556789999999999999999999999888664 678888888888787
Q ss_pred HHCCCCCCHHHHHH
Q 040365 134 LIAKIKPRHVSFSS 147 (514)
Q Consensus 134 ~~~g~~p~~~t~~~ 147 (514)
...| .|....|..
T Consensus 96 a~sg-~p~~q~Fa~ 108 (116)
T 2p58_C 96 ARSQ-DPRIQTFVN 108 (116)
T ss_dssp TTCC-CHHHHHHHH
T ss_pred HhCC-CHHHHHHHH
Confidence 7766 555555543
No 245
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=89.32 E-value=2.7 Score=34.46 Aligned_cols=29 Identities=10% Similarity=0.077 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 040365 280 EHYAAVADLLGRAGKLQEAYEFISNMHAG 308 (514)
Q Consensus 280 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 308 (514)
+.---+..+|.+.|+.++|+.+++.+|.+
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 34444666777788888888888877644
No 246
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=88.54 E-value=15 Score=33.98 Aligned_cols=167 Identities=14% Similarity=0.110 Sum_probs=105.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHH----HHHHHcCCCCCHHHHHHHHHHHH
Q 040365 179 IASSLLDMYAKCGNIRLARCIFDKMDLHDIVSWTAVIMGNALHGNAHDAISLF----EQMEKDGVKPNSVAFVAVLTACS 254 (514)
Q Consensus 179 ~~~~li~~y~k~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~----~~m~~~g~~p~~~t~~~ll~a~~ 254 (514)
.+.++..-|.+.+++++|.+++..- ...+.++|+...|.++- +-..+.++++|..+...++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4455667789999999998875432 33456677776666654 45556788899888877777776
Q ss_pred ccCC--HHHHHHHHHHhH---HhcCCCC--CHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 040365 255 HAGL--IDKAWSYFNSMT---KDYGIAP--SFEHYAAVADLLGRAGKLQEAYEFISNMHAGPTENVWLTLLSACRVHKNV 327 (514)
Q Consensus 255 ~~g~--~~~a~~~~~~m~---~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~ 327 (514)
.... .+. ..+.+.+. .++|-.| ++.....+...|.+.+++.+|+..|- ....+++..+..++.-+...+..
T Consensus 106 ~~~~~~p~r-~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~~ 183 (336)
T 3lpz_A 106 LFQPGEPVR-KRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDES 183 (336)
T ss_dssp TSCTTCHHH-HHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSCG
T ss_pred hCCCCCcHH-HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcCC
Confidence 5543 211 22222221 2234323 67778889999999999999998873 23233446666655554444332
Q ss_pred HHHHHHHHHHHhcCCCCcchHH-HHHHHHHHccChhHHHHHHHHHHh
Q 040365 328 ELAGKVAEKIFMIDPNNMGAYV-ILSNTYAAARRWKDAASLRVFMRN 373 (514)
Q Consensus 328 ~~a~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~~~a~~~~~~m~~ 373 (514)
.....|. ..+--|...++...|..+++...+
T Consensus 184 ---------------~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 184 ---------------HTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp ---------------GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------------ccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 2222332 345557788899999998877664
No 247
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=87.86 E-value=1.5 Score=39.79 Aligned_cols=89 Identities=6% Similarity=-0.095 Sum_probs=53.6
Q ss_pred HHHHHHHccCCC--CC---hhHHHHHHHHHHH-----CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-CChHHH
Q 040365 93 EDSHRLFCLLPV--KD---AISWNSIIAGCVQ-----NGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHL-TTLHLG 161 (514)
Q Consensus 93 ~~A~~~f~~~~~--~d---~~~~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~-~~~~~a 161 (514)
..|+..+++..+ |+ -..|..|...|.+ .|+.++|.+.|++..+.+..-+..++......++.. ++.+.+
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 445555554432 32 3467777777777 377777777777777643111255555666666663 777777
Q ss_pred HHHHHHHHHcCCC--CcHHHHH
Q 040365 162 KQLHGCIIRNGFD--DNMFIAS 181 (514)
Q Consensus 162 ~~~~~~~~~~~~~--~~~~~~~ 181 (514)
.+.+++.++.... |+....|
T Consensus 260 ~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 260 DEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHcCCCCCCCChhHHH
Confidence 7777777776544 5544444
No 248
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=87.59 E-value=18 Score=33.57 Aligned_cols=168 Identities=10% Similarity=0.009 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHH----HHHHHCCCCCCHHHHHHHHHHHh
Q 040365 78 IGSSLINMYAKCARVEDSHRLFCLLPVKDAISWNSIIAGCVQNGLFDEGLKFF----RQMLIAKIKPRHVSFSSIMPACA 153 (514)
Q Consensus 78 ~~~~li~~~~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~----~~m~~~g~~p~~~t~~~ll~~~~ 153 (514)
.+.++..-|.+.+++++|.+++-. =...+.+.|+...|-++- +-..+.++++|..+..-++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 456677778999999999988643 223455667766555443 55566778888888887877776
Q ss_pred ccCChH-HHHHHHHHH----HHcC--CCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHH
Q 040365 154 HLTTLH-LGKQLHGCI----IRNG--FDDNMFIASSLLDMYAKCGNIRLARCIFDKMDLHDIVSWTAVIMGNALHGNAHD 226 (514)
Q Consensus 154 ~~~~~~-~a~~~~~~~----~~~~--~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~ 226 (514)
....-+ .=..+.+.+ .+.| -.-|......+...|.+.|++.+|+.-|-.-..+.+..+..|+--+...+...+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e 185 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT 185 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc
Confidence 655422 112233333 3333 234667778889999999999999988843222233555555444433332211
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHH
Q 040365 227 AISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTK 271 (514)
Q Consensus 227 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 271 (514)
+|.+.-.+++ -|...+++..|..+|+...+
T Consensus 186 --------------~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 186 --------------APLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp --------------HHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 1222223333 34556788888887766654
No 249
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.53 E-value=3.7 Score=30.37 Aligned_cols=64 Identities=17% Similarity=0.175 Sum_probs=50.7
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHH
Q 040365 223 NAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADL 288 (514)
Q Consensus 223 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 288 (514)
+.-++.+-++.+....+-|+.....+.|.||.+.+++..|.++|+.+..+. .+...+|..+++-
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~--~~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCchhhHHHHHHH
Confidence 455677777777778889999999999999999999999999999886543 3445567777653
No 250
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=86.25 E-value=20 Score=32.88 Aligned_cols=169 Identities=9% Similarity=0.039 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHH----HHHHHHCCCCCCHHHHHHHHHHHh
Q 040365 78 IGSSLINMYAKCARVEDSHRLFCLLPVKDAISWNSIIAGCVQNGLFDEGLKF----FRQMLIAKIKPRHVSFSSIMPACA 153 (514)
Q Consensus 78 ~~~~li~~~~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l----~~~m~~~g~~p~~~t~~~ll~~~~ 153 (514)
.|.++..-|.+.+++++|.+++.. -...+.+.|+...|-++ .+...+.++++|..+..-++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 456777888999999999988643 22345567776665554 455566788888888888887776
Q ss_pred ccCCh-----HHHHHHHHHHHHcCC--CCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCChhHHHHHHHHHHhC---CC
Q 040365 154 HLTTL-----HLGKQLHGCIIRNGF--DDNMFIASSLLDMYAKCGNIRLARCIFDKMDLHDIVSWTAVIMGNALH---GN 223 (514)
Q Consensus 154 ~~~~~-----~~a~~~~~~~~~~~~--~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~---g~ 223 (514)
....- .-..+......+.|- .-++.....+...|.+.|++.+|+.-|-.-...|...+..|+--+... |.
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCC
Confidence 54321 222233333333332 246788888999999999999999887643333455555555444333 43
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHh
Q 040365 224 AHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKD 272 (514)
Q Consensus 224 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 272 (514)
..++ |...-.+++ -|...+++..|..+|+...+.
T Consensus 184 ~~e~--------------dlf~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 184 DSTV--------------AEFFSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHH--------------HHHHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred cchH--------------HHHHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 3332 112122233 344568888888888876543
No 251
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=86.15 E-value=20 Score=32.85 Aligned_cols=169 Identities=9% Similarity=0.017 Sum_probs=102.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHH----HHHHHHcCCCCCHHHHHHHHHHHH
Q 040365 179 IASSLLDMYAKCGNIRLARCIFDKMDLHDIVSWTAVIMGNALHGNAHDAISL----FEQMEKDGVKPNSVAFVAVLTACS 254 (514)
Q Consensus 179 ~~~~li~~y~k~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l----~~~m~~~g~~p~~~t~~~ll~a~~ 254 (514)
.|.++..-|.+.+++++|.+++..- ...+.++|+...|.++ .+...+.++++|......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4456667788888999888875432 3345667887666665 444455688888888777777665
Q ss_pred ccCCHH-HHHHHHHHhH---HhcCCC--CCHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---C
Q 040365 255 HAGLID-KAWSYFNSMT---KDYGIA--PSFEHYAAVADLLGRAGKLQEAYEFISNMHAGPTENVWLTLLSACRVH---K 325 (514)
Q Consensus 255 ~~g~~~-~a~~~~~~m~---~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~---~ 325 (514)
.-..-+ .=.++.+.+. .+.|-. -++.....+...|.+.|++.+|+..|-- ....|...+..++.-+... |
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~-~~~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML-GTHDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT-SCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh-CCCccHHHHHHHHHHHHHhcCCC
Confidence 532111 1122222222 122222 3778888999999999999999987752 2112455565555544444 4
Q ss_pred CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHh
Q 040365 326 NVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRN 373 (514)
Q Consensus 326 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 373 (514)
...++-... ...+--|...|+...|..+++...+
T Consensus 183 ~~~e~dlf~--------------~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 183 EDSTVAEFF--------------SRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp CHHHHHHHH--------------HHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred CcchHHHHH--------------HHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 443332221 1234456678899999999887754
No 252
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=84.11 E-value=14 Score=29.05 Aligned_cols=65 Identities=9% Similarity=-0.033 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCC-cchHHHHHHHHHHccChhHHHHHHHHHHh
Q 040365 309 PTENVWLTLLSACRVHK---NVELAGKVAEKIFMIDPNN-MGAYVILSNTYAAARRWKDAASLRVFMRN 373 (514)
Q Consensus 309 p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 373 (514)
|+..+--.+..++.+.. +..+|+.+++.+...+|.. -.....|+-++.+.|++++|++..+.+.+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 44444434444444333 2345666666666655532 33444566666666666666666666654
No 253
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=83.41 E-value=7.3 Score=28.86 Aligned_cols=48 Identities=17% Similarity=0.146 Sum_probs=36.3
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 040365 305 MHAGPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILS 352 (514)
Q Consensus 305 m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 352 (514)
+..-|++.+..+.+.||++.+|+..|.++++-+...-.+....|-.++
T Consensus 39 ~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 39 YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 334589999999999999999999999999988765443344565544
No 254
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=83.03 E-value=9.8 Score=36.38 Aligned_cols=68 Identities=18% Similarity=0.185 Sum_probs=41.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHH----hcCCCCCHhH
Q 040365 213 AVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTK----DYGIAPSFEH 281 (514)
Q Consensus 213 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~ 281 (514)
.++..+...|++.+|+..+..+... -+-+...+..++.++...|+..+|.+.|+...+ +.|+.|+..+
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3455556666666666666666553 123555666777777777777777766665432 3577776544
No 255
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=82.99 E-value=5.2 Score=31.37 Aligned_cols=64 Identities=17% Similarity=0.183 Sum_probs=50.4
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHH
Q 040365 223 NAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADL 288 (514)
Q Consensus 223 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 288 (514)
+.-+..+-++.+....+-|+.....+.|.+|.+.+++..|.++|+.+..+ ..+...+|..+++-
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lqE 131 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQE 131 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHHH
Confidence 34466667777777788999999999999999999999999999988654 34446667777653
No 256
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=82.83 E-value=27 Score=38.80 Aligned_cols=165 Identities=10% Similarity=-0.002 Sum_probs=95.9
Q ss_pred HHHHHHHHHHCCCHHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh
Q 040365 79 GSSLINMYAKCARVEDSHRLFCLLPVKDAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTL 158 (514)
Q Consensus 79 ~~~li~~~~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 158 (514)
...++..+.+.+..+.|.++..-.+ .+...--.+..+|...|++++|.+.|.+.. .|+..+.... ...
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~-~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa-~~~~~~~~l~----------~~~ 882 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLN-SDPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQF----------AVL 882 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CSCTTCCCSC----------SSH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcc-CCcHHHHHHHHHHHhcCCHHHHHHHHHHHh-hhhcccchhh----------hhh
Confidence 3446666677788877777665554 344444566778888999999999997752 2222221100 000
Q ss_pred HHHHHHHHHHHHcC--CCCcHHHHHHHHHHHHhcCCHHHHHHHHHh----CCCCCh----hHHHHHHHHHHhCCChHHHH
Q 040365 159 HLGKQLHGCIIRNG--FDDNMFIASSLLDMYAKCGNIRLARCIFDK----MDLHDI----VSWTAVIMGNALHGNAHDAI 228 (514)
Q Consensus 159 ~~a~~~~~~~~~~~--~~~~~~~~~~li~~y~k~g~~~~A~~~~~~----m~~~d~----~~~~~li~~~~~~g~~~~A~ 228 (514)
.. ...+.... ...-..-|..++..+-+.|.++.+.++-.. ....+. ..|..+..++...|++++|.
T Consensus 883 ~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay 958 (1139)
T 4fhn_B 883 RE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAH 958 (1139)
T ss_dssp HH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGG
T ss_pred cc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHH
Confidence 00 01111110 111234456666777777776666544332 222222 25888999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 040365 229 SLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDK 261 (514)
Q Consensus 229 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 261 (514)
..+-.+.....+ ...+..++...+..|..+.
T Consensus 959 ~aL~~~pd~~~r--~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 959 VALMVLSTTPLK--KSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHHSSSC--HHHHHHHHHHHHHHCCHHH
T ss_pred HHHHhCCCHHHH--HHHHHHHHHHHHhCCChhh
Confidence 999888765443 3456666666666555443
No 257
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=82.67 E-value=6.1 Score=41.29 Aligned_cols=48 Identities=13% Similarity=-0.074 Sum_probs=22.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHc
Q 040365 310 TENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAA 358 (514)
Q Consensus 310 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 358 (514)
+..-|..|.....+.+++++|..+|+..+... -++.+..-|+..|.+.
T Consensus 612 s~lEWEiLGlla~RL~h~~EA~~a~~~~l~~R-Fs~ka~~kLLeiY~~~ 659 (754)
T 4gns_B 612 SGLEWELLGLIMLRTWHWEDAVACLRTSIVAR-FDPVSCQQLLKIYLQP 659 (754)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-CCHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHhc
Confidence 33445555554444555555555555544322 2344444555555443
No 258
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=81.19 E-value=37 Score=37.67 Aligned_cols=141 Identities=13% Similarity=0.050 Sum_probs=83.0
Q ss_pred HHHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCCC---------C------------
Q 040365 149 MPACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMDLH---------D------------ 207 (514)
Q Consensus 149 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~---------d------------ 207 (514)
+..+...+..+.+.++... .+.+....-.+..+|..+|++++|.+.|.+.... .
T Consensus 819 ~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~ 893 (1139)
T 4fhn_B 819 VEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 893 (1139)
T ss_dssp HHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTT
T ss_pred HHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccc
Confidence 3344444555554443322 2334444445677788899999999999876311 0
Q ss_pred -----hhHHHHHHHHHHhCCChHHHHHHHHHHHHcCC-C-CCHH--HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC
Q 040365 208 -----IVSWTAVIMGNALHGNAHDAISLFEQMEKDGV-K-PNSV--AFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPS 278 (514)
Q Consensus 208 -----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~-p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 278 (514)
..-|..++..|-++|.++.++++-+...+... . ++.. .|..+..++...|++++|...+-.+... . --
T Consensus 894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~-~--~r 970 (1139)
T 4fhn_B 894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT-P--LK 970 (1139)
T ss_dssp SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS-S--SC
T ss_pred ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH-H--HH
Confidence 01255666777778888888777766655321 1 1111 3566777888888888888777766321 2 23
Q ss_pred HhHHHHHHHHHHhcCCHHH
Q 040365 279 FEHYAAVADLLGRAGKLQE 297 (514)
Q Consensus 279 ~~~~~~li~~~~~~g~~~~ 297 (514)
......||..++..|.+++
T Consensus 971 ~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 971 KSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHhCCChhh
Confidence 4455666666666555444
No 259
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=80.03 E-value=22 Score=29.08 Aligned_cols=63 Identities=11% Similarity=0.015 Sum_probs=42.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhC-CCCCCh-------hhHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 040365 8 SWNTVIVGLARNGLYEEALNIVRQMGNV-NLKPDS-------FTLSSVLPIFADYVDVIKGKEIHGYAIRH 70 (514)
Q Consensus 8 ~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~-------~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 70 (514)
.+-.-+..+...|.++.|+-+...+... +..|+. .++..+..++...+++..|...|.++++.
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 3444567788888888888877765432 123332 24566777888889999999888887543
No 260
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=75.45 E-value=57 Score=31.02 Aligned_cols=23 Identities=17% Similarity=0.015 Sum_probs=10.7
Q ss_pred HHHHHHhCCChHHHHHHHHHHHH
Q 040365 214 VIMGNALHGNAHDAISLFEQMEK 236 (514)
Q Consensus 214 li~~~~~~g~~~~A~~l~~~m~~ 236 (514)
++..|...|++.+|.+++.++.+
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~ 127 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLR 127 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Confidence 34444444445554444444443
No 261
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.82 E-value=68 Score=31.11 Aligned_cols=147 Identities=10% Similarity=0.033 Sum_probs=72.6
Q ss_pred CChhHHHHHHHHHhh-----CCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHh-CCCCchhHHHHHH----HHHHHC
Q 040365 20 GLYEEALNIVRQMGN-----VNLKPDSFTLSSVLPIFADYVDVIKGKEIHGYAIRH-GLDANVCIGSSLI----NMYAKC 89 (514)
Q Consensus 20 g~~~~A~~l~~~m~~-----~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li----~~~~~~ 89 (514)
|++++|++.+..+.+ ............++..|...++++...+.+..+.+. |..+ .....++ ......
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk--~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK--LSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH--HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHhcC
Confidence 567778777765543 223334556777888888888888776666554432 3222 2222333 222222
Q ss_pred CCHH--HHHHHHccCC---CC-------ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCH-----HHHHHHHHHH
Q 040365 90 ARVE--DSHRLFCLLP---VK-------DAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRH-----VSFSSIMPAC 152 (514)
Q Consensus 90 g~~~--~A~~~f~~~~---~~-------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~~~ 152 (514)
...+ .-..+.+... +. .......|...|-..|++.+|.+++..+..+-...+. ..+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 2222 2222332222 11 0112234566677777777777777776542111111 1233344445
Q ss_pred hccCChHHHHHHHHHH
Q 040365 153 AHLTTLHLGKQLHGCI 168 (514)
Q Consensus 153 ~~~~~~~~a~~~~~~~ 168 (514)
...+++..|..+...+
T Consensus 188 l~~~d~~~a~~~~~ki 203 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKI 203 (445)
T ss_dssp HHHTCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHH
Confidence 5555555555555443
No 262
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=73.61 E-value=34 Score=28.95 Aligned_cols=104 Identities=13% Similarity=0.198 Sum_probs=72.5
Q ss_pred HHHHHHhCC-CCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCcchHHHHHHHHHHccChhHHHHHHHHH
Q 040365 298 AYEFISNMH-AGPTEN---VWLTLLSACRVHKNVELAGKVAEKIFMID--PNNMGAYVILSNTYAAARRWKDAASLRVFM 371 (514)
Q Consensus 298 A~~~~~~m~-~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 371 (514)
+...|...+ .+.|.. .|-..+..| ..++...+..+|..|...+ ..-+..|...+..+...|++++|.++++.-
T Consensus 63 c~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~G 141 (202)
T 3esl_A 63 CLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELG 141 (202)
T ss_dssp HHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344443332 335553 455555544 2444678889999888754 667788999999999999999999999988
Q ss_pred HhCCCccCCcccEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcccCC
Q 040365 372 RNKGMKKTPACSWIEVKNKAYAFVAGDKSHPFYHRINEALKELLERMEQEGYVPDT 427 (514)
Q Consensus 372 ~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~ 427 (514)
.+++-+|. +...+...+...+|.+.+++.|.
T Consensus 142 I~~~A~P~-------------------------~rL~~~~~~F~~R~~~~~~~~~~ 172 (202)
T 3esl_A 142 AENNCRPY-------------------------NRLLRSLSNYEDRLREMNIVENQ 172 (202)
T ss_dssp HHTTCBSH-------------------------HHHHHHHHHHHHHHHHTTCCCC-
T ss_pred HHcCCccH-------------------------HHHHHHHHHHHHHHHhcCCCCCC
Confidence 88876642 34455566788899988885443
No 263
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=73.18 E-value=87 Score=32.10 Aligned_cols=32 Identities=16% Similarity=0.051 Sum_probs=21.4
Q ss_pred HhHHHHHHHH-----HHhcCCHHHHHHHHHhCCCCCC
Q 040365 279 FEHYAAVADL-----LGRAGKLQEAYEFISNMHAGPT 310 (514)
Q Consensus 279 ~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~~p~ 310 (514)
..++..|.+. +...|+++.|++.+++++.-|.
T Consensus 533 ~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L~llPl 569 (661)
T 2qx5_A 533 KEICMLLLNISSIRELYFNKQWQETLSQMELLDLLPF 569 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTSCSCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCC
Confidence 3455555443 3678888888888888865553
No 264
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=72.78 E-value=42 Score=28.22 Aligned_cols=17 Identities=6% Similarity=0.022 Sum_probs=6.7
Q ss_pred chhHHHHHHHHHHHCCC
Q 040365 75 NVCIGSSLINMYAKCAR 91 (514)
Q Consensus 75 ~~~~~~~li~~~~~~g~ 91 (514)
+..+-...+..+.+.|.
T Consensus 32 ~~~vR~~A~~~L~~~~~ 48 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGD 48 (211)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 33333333444444333
No 265
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=72.63 E-value=38 Score=29.78 Aligned_cols=57 Identities=19% Similarity=0.272 Sum_probs=25.9
Q ss_pred HHHHhcCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 040365 185 DMYAKCGNIRLARCIFDKMD----LHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPN 242 (514)
Q Consensus 185 ~~y~k~g~~~~A~~~~~~m~----~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 242 (514)
...++.|+.+-+..+++... ..|...++.+..+ +..|......++++.+.+.|..++
T Consensus 153 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a-~~~~~~~~~~~i~~~Ll~~g~~~~ 213 (285)
T 1wdy_A 153 MDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHA-LLSSDDSDVEAITHLLLDHGADVN 213 (285)
T ss_dssp HHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHH-HHCSCTTTHHHHHHHHHHTTCCSS
T ss_pred HHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHH-HHccccchHHHHHHHHHHcCCCCC
Confidence 33445566666666665421 1222222333222 234444444455555555555544
No 266
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=72.32 E-value=26 Score=27.55 Aligned_cols=60 Identities=8% Similarity=0.023 Sum_probs=38.3
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHCCCHHHHHHHHccCC---CCChhHHHHHHH
Q 040365 56 DVIKGKEIHGYAIRHGLDANVCIGSSLINMYAKCARVEDSHRLFCLLP---VKDAISWNSIIA 115 (514)
Q Consensus 56 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~d~~~~~~li~ 115 (514)
|.-+.++-++.+...++.|++.+..+-+.++-+.+++..|.++|+.++ .+....|..++.
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 344555666666666677777777777777777777777777777665 223344655553
No 267
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=71.54 E-value=19 Score=33.72 Aligned_cols=65 Identities=17% Similarity=0.236 Sum_probs=45.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCCCC---hhHHHHHHHHHHhCCC--hHHHHHHHHHHHHcCCCCCHH
Q 040365 180 ASSLLDMYAKCGNIRLARCIFDKMDLHD---IVSWTAVIMGNALHGN--AHDAISLFEQMEKDGVKPNSV 244 (514)
Q Consensus 180 ~~~li~~y~k~g~~~~A~~~~~~m~~~d---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~ 244 (514)
.+.++.=|...|+.++|.+.++++..|. .+...++..++-+.++ .+....++..+...|+-+...
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q 289 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 289 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHH
Confidence 4678888999999999999999998663 2344555555555433 355777888887777654443
No 268
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=71.26 E-value=10 Score=33.83 Aligned_cols=57 Identities=18% Similarity=0.244 Sum_probs=41.1
Q ss_pred HHHhcCCHHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 040365 288 LLGRAGKLQEAYEFISN-MHAGP-TENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNN 344 (514)
Q Consensus 288 ~~~~~g~~~~A~~~~~~-m~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 344 (514)
.+.+.|.+++|++.... ++.+| |...-..|+..++..|++++|..-++...+++|..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 45677888888776554 44444 55666677788888888888888888888888753
No 269
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=67.68 E-value=92 Score=30.15 Aligned_cols=95 Identities=11% Similarity=0.134 Sum_probs=69.1
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHhHHh-cCCC--CC--Hh
Q 040365 211 WTAVIMGNALHGNAHDAISLFEQMEKD--GVKPN---SVAFVAVLTACSHAGLIDKAWSYFNSMTKD-YGIA--PS--FE 280 (514)
Q Consensus 211 ~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~~--p~--~~ 280 (514)
...|...|...|++.+|.+++.++..+ |..+. ...+...+..|...+++.+|..+++.+... .... |+ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 455677888899999999999998753 32222 135666778899999999999999887432 1122 22 35
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC
Q 040365 281 HYAAVADLLGRAGKLQEAYEFISNM 305 (514)
Q Consensus 281 ~~~~li~~~~~~g~~~~A~~~~~~m 305 (514)
.|.+++..+...+++.+|...|.+.
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 6778888889999999998877665
No 270
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=66.93 E-value=1.4e+02 Score=32.02 Aligned_cols=52 Identities=15% Similarity=0.148 Sum_probs=22.4
Q ss_pred HHHCCChhHHHHHHHHHHHCCCCCCHHHHH---HHHHHHhccCChHHHHHHHHHHHH
Q 040365 117 CVQNGLFDEGLKFFRQMLIAKIKPRHVSFS---SIMPACAHLTTLHLGKQLHGCIIR 170 (514)
Q Consensus 117 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~---~ll~~~~~~~~~~~a~~~~~~~~~ 170 (514)
+...|+.+.+..+.+.+.... .|. .-|. ++.-+|+..|+.....+++..+..
T Consensus 534 ll~~g~~e~~~~li~~L~~~~-dp~-vRygaa~alglAyaGTGn~~aIq~LL~~~~~ 588 (963)
T 4ady_A 534 LINYGRQELADDLITKMLASD-ESL-LRYGGAFTIALAYAGTGNNSAVKRLLHVAVS 588 (963)
T ss_dssp HHTTTCGGGGHHHHHHHHHCS-CHH-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred hhhCCChHHHHHHHHHHHhCC-CHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc
Confidence 334455555555555554421 111 1121 122244555555555555555544
No 271
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=66.41 E-value=45 Score=26.09 Aligned_cols=35 Identities=17% Similarity=0.262 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 040365 311 ENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNM 345 (514)
Q Consensus 311 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 345 (514)
...+--|.-|+.+.|+++.|.+..+.+++.+|+|.
T Consensus 78 Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 78 RECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 34556677788888888888888888888888874
No 272
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=64.62 E-value=30 Score=29.67 Aligned_cols=85 Identities=8% Similarity=-0.022 Sum_probs=43.8
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCChh---hHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhH--HHHHHHHHH
Q 040365 13 IVGLARNGLYEEALNIVRQMGNVNLKPDSF---TLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCI--GSSLINMYA 87 (514)
Q Consensus 13 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~ 87 (514)
+...++.|+.+....+++.+...|..++.. -.+. +...+..|+.+ +.+.+++.|..++... ..+.+...+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~-L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~ 87 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTP-LHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLAC 87 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCH-HHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCH-HHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHH
Confidence 344556677777777776665555444322 2222 33333445554 4445555665443221 123344445
Q ss_pred HCCCHHHHHHHHccC
Q 040365 88 KCARVEDSHRLFCLL 102 (514)
Q Consensus 88 ~~g~~~~A~~~f~~~ 102 (514)
+.|+.+-+..+++..
T Consensus 88 ~~~~~~~~~~Ll~~~ 102 (241)
T 1k1a_A 88 EHRSPTCLRALLDSA 102 (241)
T ss_dssp HTTCHHHHHHHHHHS
T ss_pred HcCCHHHHHHHHHcC
Confidence 667776666666554
No 273
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=64.24 E-value=61 Score=26.86 Aligned_cols=47 Identities=13% Similarity=0.111 Sum_probs=17.7
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCC
Q 040365 176 NMFIASSLLDMYAKCGNIRLARCIFDKMDLHDIVSWTAVIMGNALHG 222 (514)
Q Consensus 176 ~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g 222 (514)
+..+-...+.++++.|+.+....+...+..+|...-...+.++.+.|
T Consensus 89 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 135 (201)
T 3ltj_A 89 DGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIG 135 (201)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 33333344444444444332223333333334333333333443333
No 274
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=63.59 E-value=2.4 Score=25.05 Aligned_cols=13 Identities=46% Similarity=1.229 Sum_probs=10.1
Q ss_pred ccc-CCcccCCCCC
Q 040365 501 HHF-EDGKCSCGDY 513 (514)
Q Consensus 501 h~f-~~g~csc~~~ 513 (514)
|.. ++|.||||-|
T Consensus 16 HRL~~~~~C~CG~y 29 (42)
T 2l0z_A 16 HRLNSLGGCRCGKY 29 (42)
T ss_dssp SCCCTTSSBTTTTB
T ss_pred ceecCCceeccccc
Confidence 444 6899999976
No 275
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=62.63 E-value=85 Score=27.96 Aligned_cols=50 Identities=12% Similarity=0.092 Sum_probs=22.4
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHh
Q 040365 219 ALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSM 269 (514)
Q Consensus 219 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 269 (514)
.+.|..++|++....-++.. +-|...-..++..++-.|+++.|.+-++..
T Consensus 8 l~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~ 57 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQS 57 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34455555555544444431 112333334444445555555555544444
No 276
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=61.99 E-value=1.5e+02 Score=30.46 Aligned_cols=44 Identities=25% Similarity=0.404 Sum_probs=27.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHhC
Q 040365 8 SWNTVIVGLARNGLYEEALNIVRQMGNVNLKPDSFTLSSVLPIFAD 53 (514)
Q Consensus 8 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 53 (514)
.| ++|-.+.|.|++++|.++.++.... +.--...|...+..++.
T Consensus 155 ~W-a~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 155 IW-ALIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp HH-HHHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC--
T ss_pred cH-HHHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHHh
Confidence 55 4788899999999999998776532 11112356666777764
No 277
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=61.35 E-value=62 Score=25.97 Aligned_cols=49 Identities=8% Similarity=0.015 Sum_probs=40.7
Q ss_pred HHHHHHHHHhcC--CCCcchHHHHHHHHHHccChhHHHHHHHHHHhCCCcc
Q 040365 330 AGKVAEKIFMID--PNNMGAYVILSNTYAAARRWKDAASLRVFMRNKGMKK 378 (514)
Q Consensus 330 a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 378 (514)
+..+|..|...+ ...+..|...+..+...|++++|.++++.-.+++-+|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 778888887654 5667788899999999999999999999888887664
No 278
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=60.24 E-value=36 Score=32.91 Aligned_cols=96 Identities=11% Similarity=-0.015 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCC------CChhHHHHHHHHHHhCCChHHHHHHHHHHHH---cCCCCCHHHH--H
Q 040365 179 IASSLLDMYAKCGNIRLARCIFDKMDL------HDIVSWTAVIMGNALHGNAHDAISLFEQMEK---DGVKPNSVAF--V 247 (514)
Q Consensus 179 ~~~~li~~y~k~g~~~~A~~~~~~m~~------~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~---~g~~p~~~t~--~ 247 (514)
+...+.+.|.++|+++.|.+.|.++.. .-+..+-..|..+...+++..+...+.+... .+-.|+...- .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 455677788888888888888877752 2234566677777778888888888777654 2323332211 1
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHHhcC
Q 040365 248 AVLTACSHAGLIDKAWSYFNSMTKDYG 274 (514)
Q Consensus 248 ~ll~a~~~~g~~~~a~~~~~~m~~~~~ 274 (514)
.-...+...+++..|-..|-.....+.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 111223456788888777776655443
No 279
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=59.25 E-value=18 Score=31.03 Aligned_cols=90 Identities=14% Similarity=0.083 Sum_probs=38.7
Q ss_pred CCCcchHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChh--hHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhH--
Q 040365 3 VSDLVSWNTVIVGLARNGLYEEALNIVRQMGNVNLKPDSF--TLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCI-- 78 (514)
Q Consensus 3 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-- 78 (514)
..|....+.|.. .++.|+.+.. +.+.+.|..++.. .-.+.+...+..|+.+ +.+.+++.|..++...
T Consensus 4 ~~d~~~~~~l~~-A~~~g~~~~~----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~~~~~~~~~~~ 74 (240)
T 3eu9_A 4 HIDDYSTWDIVK-ATQYGIYERC----RELVEAGYDVRQPDKENVTLLHWAAINNRID----LVKYYISKGAIVDQLGGD 74 (240)
T ss_dssp CCSCGGGCCHHH-HHHTTCHHHH----HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCBTT
T ss_pred ccccccchHHHH-HHHcCChHHH----HHHHHcCCCcCCCCCCCCCHHHHHHHhCCHH----HHHHHHHcCCcchhhcCC
Confidence 334444444444 3455665443 3344444433321 1112333444455554 3344445553322111
Q ss_pred -HHHHHHHHHHCCCHHHHHHHHcc
Q 040365 79 -GSSLINMYAKCARVEDSHRLFCL 101 (514)
Q Consensus 79 -~~~li~~~~~~g~~~~A~~~f~~ 101 (514)
..+.+...++.|+.+-+..+++.
T Consensus 75 ~~~t~L~~A~~~~~~~~v~~Ll~~ 98 (240)
T 3eu9_A 75 LNSTPLHWATRQGHLSMVVQLMKY 98 (240)
T ss_dssp TTBCHHHHHHHHTCHHHHHHHHHT
T ss_pred cCCChhHHHHHcCCHHHHHHHHHc
Confidence 12333444555666666555554
No 280
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=58.81 E-value=45 Score=25.87 Aligned_cols=63 Identities=17% Similarity=0.268 Sum_probs=43.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCCCCh---hHHHHHHHHHHhCCC--hHHHHHHHHHHHHcCCCCC
Q 040365 180 ASSLLDMYAKCGNIRLARCIFDKMDLHDI---VSWTAVIMGNALHGN--AHDAISLFEQMEKDGVKPN 242 (514)
Q Consensus 180 ~~~li~~y~k~g~~~~A~~~~~~m~~~d~---~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~ 242 (514)
.+.++.-|...|+.++|.+.++++..|.- ....++..++-+.+. .+.+..++..+...|+-+.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 45678889899999999999999876632 344455555555432 3567778888877765543
No 281
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=58.34 E-value=1.3e+02 Score=28.61 Aligned_cols=89 Identities=11% Similarity=0.007 Sum_probs=50.3
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHH
Q 040365 276 APSFEHYAAVADLLGRAGKLQEAYEFISNMH--AGPTENVW---LTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVI 350 (514)
Q Consensus 276 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 350 (514)
.|....+..++.+| +.+++.+..++++... ...|.... ..|....+ ...+.++ ..|-....+..
T Consensus 253 ~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir--------~~~L~~i--~~pYsrIsl~~ 321 (394)
T 3txn_A 253 GRDIDAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTML--------EQNLCRI--IEPYSRVQVAH 321 (394)
T ss_dssp SHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHH--------HHHHHHH--HTTCSEEEHHH
T ss_pred CccHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH--------HHHHHHH--hHhhceeeHHH
Confidence 46666666666665 5567877777777653 23455421 11111111 1111111 23555566666
Q ss_pred HHHHHHHccChhHHHHHHHHHHhCCCc
Q 040365 351 LSNTYAAARRWKDAASLRVFMRNKGMK 377 (514)
Q Consensus 351 l~~~~~~~g~~~~a~~~~~~m~~~g~~ 377 (514)
++..+.- ..+++...+.+|...|.-
T Consensus 322 iA~~l~l--s~~evE~~L~~lI~dg~I 346 (394)
T 3txn_A 322 VAESIQL--PMPQVEKKLSQMILDKKF 346 (394)
T ss_dssp HHHHHTC--CHHHHHHHHHHHHHTTSS
T ss_pred HHHHHCc--CHHHHHHHHHHHHHCCCe
Confidence 6666543 678999999999887753
No 282
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=58.32 E-value=68 Score=25.44 Aligned_cols=34 Identities=18% Similarity=0.265 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 040365 312 NVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNM 345 (514)
Q Consensus 312 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 345 (514)
.....|.-++.+.|+++.|.+..+.+++.+|+|.
T Consensus 78 dcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~ 111 (144)
T 1y8m_A 78 ECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 111 (144)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence 3445667789999999999999999999999875
No 283
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=56.54 E-value=84 Score=25.96 Aligned_cols=153 Identities=12% Similarity=0.022 Sum_probs=79.2
Q ss_pred chhHHHHHHHHHHHCCCHHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 040365 75 NVCIGSSLINMYAKCARVEDSHRLFCLLPVKDAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAH 154 (514)
Q Consensus 75 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 154 (514)
|..+-...+..+.+.|.-+....+.+.+..+|...-...+.++.+.+..+ +...+.++.. .++...-...+.++.+
T Consensus 27 ~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~ 102 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVALGQ 102 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 33333344444444444333344444444555555555555666666543 3344444433 3566666666667776
Q ss_pred cCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHH
Q 040365 155 LTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMDLHDIVSWTAVIMGNALHGNAHDAISLFEQM 234 (514)
Q Consensus 155 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m 234 (514)
.++.+....+.. +. -.++..+-...+.+.++.|+.+....+...+..++...-...+.++...|. .++...+.++
T Consensus 103 ~~~~~~~~~L~~-~l---~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~ 177 (201)
T 3ltj_A 103 IGDERAVEPLIK-AL---KDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKL 177 (201)
T ss_dssp HCCGGGHHHHHH-HT---TCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHH
T ss_pred hCcHHHHHHHHH-HH---cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHH
Confidence 666543333332 22 245666666677777777765444444444455565555555566665554 3455555555
Q ss_pred HH
Q 040365 235 EK 236 (514)
Q Consensus 235 ~~ 236 (514)
..
T Consensus 178 l~ 179 (201)
T 3ltj_A 178 AE 179 (201)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 284
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=56.18 E-value=1.4e+02 Score=29.42 Aligned_cols=61 Identities=15% Similarity=0.154 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCh-hH------HH-HHHHHHHhCCChHHHHHHHHHHHHc
Q 040365 177 MFIASSLLDMYAKCGNIRLARCIFDKMDLHDI-VS------WT-AVIMGNALHGNAHDAISLFEQMEKD 237 (514)
Q Consensus 177 ~~~~~~li~~y~k~g~~~~A~~~~~~m~~~d~-~~------~~-~li~~~~~~g~~~~A~~l~~~m~~~ 237 (514)
..+.|.|+..|...+.++.|..+..+..-|.. .+ |. -+...+.-.+++.+|.+.|......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 56788899999999999999999998865532 22 22 1234466688999998888887653
No 285
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=55.44 E-value=41 Score=32.47 Aligned_cols=96 Identities=7% Similarity=-0.017 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHH----
Q 040365 210 SWTAVIMGNALHGNAHDAISLFEQMEKDGVKPN--SVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYA---- 283 (514)
Q Consensus 210 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~---- 283 (514)
++..+..-|.+.|+.++|.+.|.++...-..+. ...+..++..+...+++..+..+...+.....-.++...-+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 567788889999999999999999987533333 35677888899999999999999998854433333332221
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC
Q 040365 284 AVADLLGRAGKLQEAYEFISNM 305 (514)
Q Consensus 284 ~li~~~~~~g~~~~A~~~~~~m 305 (514)
+-...+...+++.+|-..|-+.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHH
Confidence 1122344678899988877654
No 286
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=55.43 E-value=56 Score=27.81 Aligned_cols=54 Identities=6% Similarity=-0.047 Sum_probs=32.4
Q ss_pred HHHhCCCChHHHHHHHHHHHHhCCCCchh--HHHHHHHHHHHCCCHHHHHHHHccC
Q 040365 49 PIFADYVDVIKGKEIHGYAIRHGLDANVC--IGSSLINMYAKCARVEDSHRLFCLL 102 (514)
Q Consensus 49 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~f~~~ 102 (514)
...+..|+.+..+.+++.+.+.|..++.. ...+.+...+..|+.+-+..+++.-
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 69 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 69 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 33445678887777777766666544432 1223445556677777777766643
No 287
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=54.34 E-value=87 Score=25.49 Aligned_cols=49 Identities=8% Similarity=0.034 Sum_probs=40.7
Q ss_pred HHHHHHHHHhcC--CCCcchHHHHHHHHHHccChhHHHHHHHHHHhCCCcc
Q 040365 330 AGKVAEKIFMID--PNNMGAYVILSNTYAAARRWKDAASLRVFMRNKGMKK 378 (514)
Q Consensus 330 a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 378 (514)
...+|..|...+ ..-+..|...+..+...|++.+|.++++.-.+++.+|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 666788777654 6667889999999999999999999999988887664
No 288
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=51.21 E-value=83 Score=24.33 Aligned_cols=63 Identities=13% Similarity=0.189 Sum_probs=40.5
Q ss_pred HHHHHHHHHHCCCHHHHHHHHccCCCCC---hhHHHHHHHHHHHCCC--hhHHHHHHHHHHHCCCCCC
Q 040365 79 GSSLINMYAKCARVEDSHRLFCLLPVKD---AISWNSIIAGCVQNGL--FDEGLKFFRQMLIAKIKPR 141 (514)
Q Consensus 79 ~~~li~~~~~~g~~~~A~~~f~~~~~~d---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~ 141 (514)
.+.++.-|...|+.++|.+.++++..|. .+...++..++-+.+. .+.+..++..+...|+-+.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 3567788888888888888888887552 2334444455544432 3456677777777665443
No 289
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=50.55 E-value=31 Score=30.41 Aligned_cols=16 Identities=13% Similarity=0.455 Sum_probs=7.9
Q ss_pred HHhcCCHHHHHHHHHh
Q 040365 187 YAKCGNIRLARCIFDK 202 (514)
Q Consensus 187 y~k~g~~~~A~~~~~~ 202 (514)
.+..|+.+-...+++.
T Consensus 112 A~~~~~~~~~~~Ll~~ 127 (285)
T 1wdy_A 112 AAVYGKVKALKFLYKR 127 (285)
T ss_dssp HHHTTCHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHh
Confidence 3445555555544444
No 290
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=50.40 E-value=42 Score=26.98 Aligned_cols=63 Identities=17% Similarity=0.249 Sum_probs=42.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCCCC---hhHHHHHHHHHHhCCC--hHHHHHHHHHHHHcCCCCC
Q 040365 180 ASSLLDMYAKCGNIRLARCIFDKMDLHD---IVSWTAVIMGNALHGN--AHDAISLFEQMEKDGVKPN 242 (514)
Q Consensus 180 ~~~li~~y~k~g~~~~A~~~~~~m~~~d---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~ 242 (514)
.+.++.-|...|+.++|.+.++++..|. .+...++..++-+.++ .+.+..++..+...|+-+.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 4567888888999999999999987663 2344455555555332 4556777777777665443
No 291
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=49.07 E-value=20 Score=31.48 Aligned_cols=91 Identities=5% Similarity=-0.098 Sum_probs=51.3
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCChh-------hHHHHHHHHh--CCCChHHHHHHHHHHHHhCC---------CC
Q 040365 13 IVGLARNGLYEEALNIVRQMGNVNLKPDSF-------TLSSVLPIFA--DYVDVIKGKEIHGYAIRHGL---------DA 74 (514)
Q Consensus 13 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-------t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~---------~~ 74 (514)
+...++.|+.+....+++.+...|..++.. -.+.+..|.. +.|+.+-++.+++.-...+. ..
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 88 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRD 88 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccc
Confidence 345567788988888888777766555533 2344444442 56777766666665433210 00
Q ss_pred chhHHHHHHHHHHHCCCHHHHHHHHccCC
Q 040365 75 NVCIGSSLINMYAKCARVEDSHRLFCLLP 103 (514)
Q Consensus 75 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~ 103 (514)
......+.+...+..|+.+-+..+++.-.
T Consensus 89 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga 117 (260)
T 3jxi_A 89 VYYRGQTALHIAIERRCKHYVELLVEKGA 117 (260)
T ss_dssp SSEESBCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred cccCCCCHHHHHHHcCCHHHHHHHHhCCC
Confidence 00012234444566788777777776543
No 292
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=47.25 E-value=66 Score=26.45 Aligned_cols=18 Identities=6% Similarity=-0.060 Sum_probs=11.1
Q ss_pred HHHCCCHHHHHHHHccCC
Q 040365 86 YAKCARVEDSHRLFCLLP 103 (514)
Q Consensus 86 ~~~~g~~~~A~~~f~~~~ 103 (514)
.+..|+.+....++..-.
T Consensus 12 A~~~g~~~~v~~ll~~~~ 29 (201)
T 3hra_A 12 AANQRDTKKVKEILQDTT 29 (201)
T ss_dssp HHHTTCHHHHHHHHTCTT
T ss_pred HHHhccHHHHHHHHHcCC
Confidence 355667777777766543
No 293
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=46.62 E-value=64 Score=28.13 Aligned_cols=87 Identities=8% Similarity=0.059 Sum_probs=41.9
Q ss_pred HHHHHhCCChHHHHHHHHHHHH--cCCCC----CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHH
Q 040365 215 IMGNALHGNAHDAISLFEQMEK--DGVKP----NSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADL 288 (514)
Q Consensus 215 i~~~~~~g~~~~A~~l~~~m~~--~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 288 (514)
++.+..+.++++|.+++++... .++++ +.......+..-.....-.-+..+.+.+ .. .++...-...+..
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh---cCCHHHHHHHHHH
Confidence 4455566666666666665543 12221 1111122222222222222233333333 21 4455555666777
Q ss_pred HHhcCCHHHHHHHHHhC
Q 040365 289 LGRAGKLQEAYEFISNM 305 (514)
Q Consensus 289 ~~~~g~~~~A~~~~~~m 305 (514)
+.|.|+.++|.++|=+.
T Consensus 101 L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHH
Confidence 88888888888777443
No 294
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=46.26 E-value=83 Score=25.20 Aligned_cols=63 Identities=13% Similarity=0.189 Sum_probs=39.6
Q ss_pred HHHHHHHHHHCCCHHHHHHHHccCCCCC---hhHHHHHHHHHHHCCC--hhHHHHHHHHHHHCCCCCC
Q 040365 79 GSSLINMYAKCARVEDSHRLFCLLPVKD---AISWNSIIAGCVQNGL--FDEGLKFFRQMLIAKIKPR 141 (514)
Q Consensus 79 ~~~li~~~~~~g~~~~A~~~f~~~~~~d---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~ 141 (514)
.+.++.-|...|++++|.+.++++..|. .+...++..++-+.+. .+.+..++..+...|+-+.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 4567788888888888888888887552 2334444445444322 3456677777776665443
No 295
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=45.72 E-value=84 Score=26.53 Aligned_cols=149 Identities=7% Similarity=0.009 Sum_probs=69.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCC---hhhHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC-----c--hhHHHH
Q 040365 12 VIVGLARNGLYEEALNIVRQMGNVNLKPD---SFTLSSVLPIFADYVDVIKGKEIHGYAIRHGLDA-----N--VCIGSS 81 (514)
Q Consensus 12 li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-----~--~~~~~~ 81 (514)
.+...++.|+.+....+++. .|..++ ..-.+.+.. .+..|+.+-++.+ ++.|..+ + .....+
T Consensus 6 ~L~~A~~~g~~~~v~~Ll~~---~g~~~~~~~~~g~t~L~~-A~~~g~~~~v~~L----l~~~~~~~~~~~~~~~~~g~t 77 (232)
T 2rfa_A 6 PLLLAAKENDVQALSKLLKF---EGCEVHQRGAMGETALHI-AALYDNLEAAMVL----MEAAPELVFEPMTSELYEGQT 77 (232)
T ss_dssp HHHHHHHTTCHHHHHHHHTT---TCSCTTCCCTTSCCHHHH-HHHTTCHHHHHHH----HHHCGGGGGCCCCSTTTTTCC
T ss_pred HHHHHHHcCCHHHHHHHHHh---cCCCcccCCCCCCCHHHH-HHHcCCHHHHHHH----HHcCchhccccccccCCCCcC
Confidence 34455667776555444432 143333 222333333 3445666544444 4444221 1 011233
Q ss_pred HHHHHHHCCCHHHHHHHHccCCCCCh----------------hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHH-
Q 040365 82 LINMYAKCARVEDSHRLFCLLPVKDA----------------ISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVS- 144 (514)
Q Consensus 82 li~~~~~~g~~~~A~~~f~~~~~~d~----------------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t- 144 (514)
.+...+..|+.+-+..+++.-...+. .-++.|.. .+..|+.+ +++.+.+.|..++...
T Consensus 78 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~-A~~~~~~~----~v~~Ll~~ga~~~~~d~ 152 (232)
T 2rfa_A 78 ALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSF-AACVGSEE----IVRLLIEHGADIRAQDS 152 (232)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHH-HHHHTCHH----HHHHHHHTTCCTTCCCT
T ss_pred HHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHH-HHHcCCHH----HHHHHHHCCCCCCCCCC
Confidence 44555667888877777765443221 12233332 23444443 3333444555443221
Q ss_pred -HHHHHHHHhccCChHHHHHHHHHHHHcCC
Q 040365 145 -FSSIMPACAHLTTLHLGKQLHGCIIRNGF 173 (514)
Q Consensus 145 -~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 173 (514)
-.+.+...+..++.+.+.++.+.+++.|-
T Consensus 153 ~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 153 LGNTVLHILILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp TSCCHHHHHHTCSCHHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHcCChHHHHHHHHHHHhcCC
Confidence 11234444556667666666666666654
No 296
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=42.55 E-value=76 Score=26.02 Aligned_cols=152 Identities=14% Similarity=0.082 Sum_probs=70.5
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhH--HHHHHHHHHHCCCH
Q 040365 15 GLARNGLYEEALNIVRQMGNVNLKPDSFTLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCI--GSSLINMYAKCARV 92 (514)
Q Consensus 15 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~ 92 (514)
..+..|+.+....++..-...--.+|....+.+..++ ..|+.+ +.+.+++.|..++... ..+.+...+..|+.
T Consensus 11 ~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~-~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~ 85 (201)
T 3hra_A 11 EAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAV-HNNDIE----IAKALIDRGADINLQNSISDSPYLYAGAQGRT 85 (201)
T ss_dssp HHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHH-HHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred HHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHH-HcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH
Confidence 3456677776666654321000112223333344333 445544 5555666676554321 22344555678888
Q ss_pred HHHHHHHccCC----CCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCC-CCC---CHHHHHHHHHHHhccCChHHHHHH
Q 040365 93 EDSHRLFCLLP----VKDAISWNSIIAGCVQNGLFDEGLKFFRQMLIAK-IKP---RHVSFSSIMPACAHLTTLHLGKQL 164 (514)
Q Consensus 93 ~~A~~~f~~~~----~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p---~~~t~~~ll~~~~~~~~~~~a~~~ 164 (514)
+-+..+++.-. .+|..-++.+. ..+..|+.+-+..+++ .| ..+ |..-.+.+..++........-.++
T Consensus 86 ~~~~~Ll~~~~~~~~~~~~~g~t~L~-~A~~~~~~~~v~~Ll~----~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~ 160 (201)
T 3hra_A 86 EILAYMLKHATPDLNKHNRYGGNALI-PAAEKGHIDNVKLLLE----DGREDIDFQNDFGYTALIEAVGLREGNQLYQDI 160 (201)
T ss_dssp HHHHHHHHHSCCCTTCCCTTSCCSHH-HHHHTTCHHHHHHHHH----HCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHH
T ss_pred HHHHHHHhccCcccccccCCCCcHHH-HHHHcCCHHHHHHHHH----cCCCCcCCCCCCCCCHHHHHHHhccchhhHHHH
Confidence 88888885432 12222222232 3345566554444433 33 222 222223333333322223333556
Q ss_pred HHHHHHcCCCCc
Q 040365 165 HGCIIRNGFDDN 176 (514)
Q Consensus 165 ~~~~~~~~~~~~ 176 (514)
.+.+++.|..++
T Consensus 161 v~~Ll~~ga~~~ 172 (201)
T 3hra_A 161 VKLLMENGADQS 172 (201)
T ss_dssp HHHHHHTTCCTT
T ss_pred HHHHHHCCCCCC
Confidence 666677665554
No 297
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=41.66 E-value=51 Score=28.07 Aligned_cols=81 Identities=17% Similarity=0.155 Sum_probs=38.9
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCChh---hHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchh--HHHHHHHHHH
Q 040365 13 IVGLARNGLYEEALNIVRQMGNVNLKPDSF---TLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVC--IGSSLINMYA 87 (514)
Q Consensus 13 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~ 87 (514)
+...+..|+.+ +++.+.+.|..++.. ..+.+.. .+..|+.+ +.+.+++.|..++.. ...+.+...+
T Consensus 15 L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~-A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 85 (237)
T 3b7b_A 15 LHAAAEAGHVD----ICHMLVQAGANIDTCSEDQRTPLME-AAENNHLE----AVKYLIKAGALVDPKDAEGSTCLHLAA 85 (237)
T ss_dssp HHHHHHHTCHH----HHHHHHHTTCCTTCCCTTCCCHHHH-HHHTTCHH----HHHHHHTTTCCCCCCCTTSCCHHHHHH
T ss_pred HHHHHHcCcHH----HHHHHHHcCCCcCccCCCCCCHHHH-HHHhCCHH----HHHHHHhCCCCCCCCCCCCCcHHHHHH
Confidence 33445566654 344445555444332 2223333 33445554 334445555443321 1223444455
Q ss_pred HCCCHHHHHHHHccC
Q 040365 88 KCARVEDSHRLFCLL 102 (514)
Q Consensus 88 ~~g~~~~A~~~f~~~ 102 (514)
..|+.+-+..+++.-
T Consensus 86 ~~~~~~~~~~Ll~~~ 100 (237)
T 3b7b_A 86 KKGHYEVVQYLLSNG 100 (237)
T ss_dssp HTTCHHHHHHHHTTT
T ss_pred HcCCHHHHHHHHhCC
Confidence 677777777777654
No 298
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=41.56 E-value=77 Score=28.19 Aligned_cols=91 Identities=5% Similarity=-0.083 Sum_probs=48.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhH
Q 040365 285 VADLLGRAGKLQEAYEFISNMHAGPTE-NVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKD 363 (514)
Q Consensus 285 li~~~~~~g~~~~A~~~~~~m~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 363 (514)
.+...+..|+.+-+.-+++.-....+. .-++ .+......|+.+.+..+++.-...+..+..-....+...+..|+.
T Consensus 132 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~-- 208 (285)
T 3kea_A 132 SFYHAVMLNDVSIVSYFLSEIPSTFDLAILLS-CIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDI-- 208 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHH-HHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCH--
T ss_pred HHHHHHHcCCHHHHHHHHhCCCccccccCCcc-HHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCH--
Confidence 344455677777666666654322232 2333 344455778888888877776555533322222212223345554
Q ss_pred HHHHHHHHHhCCCccCC
Q 040365 364 AASLRVFMRNKGMKKTP 380 (514)
Q Consensus 364 a~~~~~~m~~~g~~~~~ 380 (514)
++.+.+.+.|..++.
T Consensus 209 --~~v~~Ll~~gad~~~ 223 (285)
T 3kea_A 209 --EMLQALFKYDINIYS 223 (285)
T ss_dssp --HHHHHHTTSCBCSTT
T ss_pred --HHHHHHHHcCCCCCC
Confidence 455566677776554
No 299
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=41.35 E-value=1.5e+02 Score=28.00 Aligned_cols=15 Identities=13% Similarity=0.457 Sum_probs=9.6
Q ss_pred HHHHHHHhCCcccCC
Q 040365 413 ELLERMEQEGYVPDT 427 (514)
Q Consensus 413 ~l~~~m~~~g~~pd~ 427 (514)
++.+.+.+.|..|+.
T Consensus 358 ~iv~~Ll~~ga~~~~ 372 (437)
T 1n11_A 358 DIVTLLLKNGASPNE 372 (437)
T ss_dssp HHHHHHHHTTCCSCC
T ss_pred HHHHHHHHCcCCCCC
Confidence 455566677777764
No 300
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=41.22 E-value=62 Score=30.89 Aligned_cols=332 Identities=10% Similarity=0.080 Sum_probs=154.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCChhh--HHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchh--HHHHHHHHHH
Q 040365 12 VIVGLARNGLYEEALNIVRQMGNVNLKPDSFT--LSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVC--IGSSLINMYA 87 (514)
Q Consensus 12 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~ 87 (514)
.+...+..|+.+-+ +.+.+.|..|+... ..+.+...+..|+.+ +.+.+++.|..++.. ...+.+...+
T Consensus 17 ~L~~Aa~~g~~~~v----~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 88 (437)
T 1n11_A 17 PLHVASFMGHLPIV----KNLLQRGASPNVSNVKVETPLHMAARAGHTE----VAKYLLQNKAKVNAKAKDDQTPLHCAA 88 (437)
T ss_dssp HHHHHHHHTCHHHH----HHHHHTTCCSCCSSSCCCCHHHHHHHHTCHH----HHHHHHHHTCCSSCCCTTSCCHHHHHH
T ss_pred HHHHHHHCCCHHHH----HHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHH
Confidence 34445566776544 44445566555321 122344444556665 444555566544321 1234455567
Q ss_pred HCCCHHHHHHHHccCCCC---ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCChHHH
Q 040365 88 KCARVEDSHRLFCLLPVK---DAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPR---HVSFSSIMPACAHLTTLHLG 161 (514)
Q Consensus 88 ~~g~~~~A~~~f~~~~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~~~~~~~~~~~a 161 (514)
+.|+.+-+.-+++.-..+ |..-++.|. ..++.|+.+-+..+++ .+..++ ..-. +.+...+..|+.+.+
T Consensus 89 ~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~-~A~~~g~~~~v~~Ll~----~~~~~~~~~~~g~-t~L~~A~~~g~~~~v 162 (437)
T 1n11_A 89 RIGHTNMVKLLLENNANPNLATTAGHTPLH-IAAREGHVETVLALLE----KEASQACMTKKGF-TPLHVAAKYGKVRVA 162 (437)
T ss_dssp HHTCHHHHHHHHHHTCCTTCCCTTCCCHHH-HHHHHTCHHHHHHHHH----TTCCSCCCCTTSC-CHHHHHHHTTCHHHH
T ss_pred HCCCHHHHHHHHhCCCCCCCCCCCCCcHHH-HHHHcCCHHHHHHHHh----CCCCCcCCCCCCC-CHHHHHHHcCCHHHH
Confidence 788988888888764433 222233333 3345667665554443 333222 1111 233344556666544
Q ss_pred HHHHHHHHHcCCCCcHH--HHHHHHHHHHhcCCHHHHHHHHHhCCCCC---hhHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 040365 162 KQLHGCIIRNGFDDNMF--IASSLLDMYAKCGNIRLARCIFDKMDLHD---IVSWTAVIMGNALHGNAHDAISLFEQMEK 236 (514)
Q Consensus 162 ~~~~~~~~~~~~~~~~~--~~~~li~~y~k~g~~~~A~~~~~~m~~~d---~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 236 (514)
+ .+++.|..++.. ...+.+...+..|+.+-+.-+++.-..++ ...++.+ ...+..|+.+- .+.+.+
T Consensus 163 ~----~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~----~~~Ll~ 233 (437)
T 1n11_A 163 E----LLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPL-HIAAKQNQVEV----ARSLLQ 233 (437)
T ss_dssp H----HHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHH-HHHHHTTCHHH----HHHHHH
T ss_pred H----HHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHH-HHHHHcCCHHH----HHHHHH
Confidence 4 444555444321 11223445567788877777766544332 2223333 33345666543 344445
Q ss_pred cCCCCCHH---HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCH---hHHHHHHHHHHhcCCHHHHHHHHHhCC--CC
Q 040365 237 DGVKPNSV---AFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSF---EHYAAVADLLGRAGKLQEAYEFISNMH--AG 308 (514)
Q Consensus 237 ~g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~--~~ 308 (514)
.|..++.. ..+.+. ..+..|..+-...+++ .+..++. ... +.+...++.|+.+-+.-+++.-. ..
T Consensus 234 ~g~~~~~~~~~g~t~L~-~A~~~g~~~~v~~Ll~-----~~~~~~~~~~~g~-t~L~~A~~~~~~~~~~~Ll~~g~~~~~ 306 (437)
T 1n11_A 234 YGGSANAESVQGVTPLH-LAAQEGHAEMVALLLS-----KQANGNLGNKSGL-TPLHLVAQEGHVPVADVLIKHGVMVDA 306 (437)
T ss_dssp TTCCTTCCCTTCCCHHH-HHHHTTCHHHHHHHHT-----TTCCTTCCCTTCC-CHHHHHHHHTCHHHHHHHHHHTCCTTC
T ss_pred cCCCCCCCCCCCCCHHH-HHHHCCCHHHHHHHHh-----cCCCCCCCCCCCC-CHHHHHHHcCCHHHHHHHHhCCccCCC
Confidence 55444321 122233 3345566655444433 1333321 111 12333456777776666665421 11
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccChhHHHHHHHHHHhCCCccC
Q 040365 309 PTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARRWKDAASLRVFMRNKGMKKT 379 (514)
Q Consensus 309 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~ 379 (514)
.|..-++.| ......|+.+....+++.-...+..+..-...| ..-+..|..+ +.+.+.+.|..++
T Consensus 307 ~~~~g~t~L-~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L-~~A~~~g~~~----iv~~Ll~~ga~~~ 371 (437)
T 1n11_A 307 TTRMGYTPL-HVASHYGNIKLVKFLLQHQADVNAKTKLGYSPL-HQAAQQGHTD----IVTLLLKNGASPN 371 (437)
T ss_dssp CCSSCCCHH-HHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHH----HHHHHHHTTCCSC
T ss_pred CCCCCCCHH-HHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHH-HHHHHCChHH----HHHHHHHCcCCCC
Confidence 222222233 334456777766655554222222222122222 2233456554 4455556776654
No 301
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=39.97 E-value=1.1e+02 Score=26.49 Aligned_cols=23 Identities=9% Similarity=-0.018 Sum_probs=16.2
Q ss_pred HHHHHHHCCChhHHHHHHHHHHH
Q 040365 113 IIAGCVQNGLFDEGLKFFRQMLI 135 (514)
Q Consensus 113 li~~~~~~g~~~~A~~l~~~m~~ 135 (514)
-++.+....++++|++++++...
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 45667777788888877776644
No 302
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=39.89 E-value=2.4e+02 Score=26.32 Aligned_cols=28 Identities=11% Similarity=0.191 Sum_probs=23.5
Q ss_pred HHHHHHHHHHCCCHHHHHHHHccCCCCC
Q 040365 79 GSSLINMYAKCARVEDSHRLFCLLPVKD 106 (514)
Q Consensus 79 ~~~li~~~~~~g~~~~A~~~f~~~~~~d 106 (514)
..++|.-|...|++++|...++++..|.
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL~~p~ 84 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDLNLGE 84 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTTCCG
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCCch
Confidence 4678888999999999999999987654
No 303
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=39.67 E-value=1.4e+02 Score=25.13 Aligned_cols=52 Identities=19% Similarity=0.247 Sum_probs=30.7
Q ss_pred HHHHHHHHHhCCCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 040365 295 LQEAYEFISNMHAGPTEN-------VWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMG 346 (514)
Q Consensus 295 ~~~A~~~~~~m~~~p~~~-------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 346 (514)
++.|+.+++.+...-|.. .--..+..|.+.|.+++|.+++++.....+.+..
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~ 152 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMP 152 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCT
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchH
Confidence 566777777775433321 1123345788999999999999988776655443
No 304
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=38.53 E-value=6.1 Score=20.13 Aligned_cols=13 Identities=46% Similarity=1.482 Sum_probs=9.4
Q ss_pred ccCCccc--CCCCCC
Q 040365 502 HFEDGKC--SCGDYW 514 (514)
Q Consensus 502 ~f~~g~c--sc~~~w 514 (514)
.|.+|.| .|++-|
T Consensus 8 ~fgngfcgdncgnsw 22 (27)
T 2hgo_A 8 NFGNGFCGDNCGNSW 22 (27)
T ss_dssp EETTTEEECSSSCEE
T ss_pred eecCccccCCcCCcc
Confidence 5788887 577666
No 305
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=38.13 E-value=10 Score=25.52 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=18.2
Q ss_pred eeEEEecCCcccccCCcccCCC
Q 040365 490 REIIVRDNSRFHHFEDGKCSCG 511 (514)
Q Consensus 490 ~~i~~rd~~~~h~f~~g~csc~ 511 (514)
..|-+.|....|+|+||+-+-.
T Consensus 8 k~v~LkDGstvyiFKDGKMamE 29 (74)
T 2k0q_A 8 KTYDLQDGSKVHVFKDGKMGME 29 (74)
T ss_dssp EEEEBTTSCEEEEETTSCEEEE
T ss_pred eeEecCCCcEEEEEcCCceehh
Confidence 4677899999999999986543
No 306
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=36.00 E-value=85 Score=26.44 Aligned_cols=85 Identities=16% Similarity=0.117 Sum_probs=38.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchh--HHHHHHHHHHHC
Q 040365 12 VIVGLARNGLYEEALNIVRQMGNVNLKPDSFTLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVC--IGSSLINMYAKC 89 (514)
Q Consensus 12 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~ 89 (514)
.+...++.|+.+....++..-...--.+|....+.+..++ ..|+.+ +.+.+++.|..++.. ...+.+...++.
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~-~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 83 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWAC-SAGHTE----IVEFLLQLGVPVNDKDDAGWSPLHIAASA 83 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHH-HHTCHH----HHHHHHHTTCCSCCCCTTSCCHHHHHHHH
T ss_pred hHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHH-HcCcHH----HHHHHHHhCCCCCCcCCCCCCHHHHHHHc
Confidence 3556666778777776666532211122333333333333 334443 444455556444321 112233333445
Q ss_pred CCHHHHHHHHcc
Q 040365 90 ARVEDSHRLFCL 101 (514)
Q Consensus 90 g~~~~A~~~f~~ 101 (514)
|+.+-+..+++.
T Consensus 84 ~~~~~v~~Ll~~ 95 (231)
T 3aji_A 84 GXDEIVKALLVK 95 (231)
T ss_dssp TCHHHHHHHHHT
T ss_pred CHHHHHHHHHHc
Confidence 666555555543
No 307
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=35.49 E-value=2.2e+02 Score=24.77 Aligned_cols=230 Identities=11% Similarity=0.006 Sum_probs=111.4
Q ss_pred CChhhHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHCCC----HHHHHHHHcc--CCCCChhHHHH
Q 040365 39 PDSFTLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVCIGSSLINMYAKCAR----VEDSHRLFCL--LPVKDAISWNS 112 (514)
Q Consensus 39 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~----~~~A~~~f~~--~~~~d~~~~~~ 112 (514)
+|...-...+.++...+.. .+...+..+++ .++..+-...+.++++.|. ......++.. ...++...-..
T Consensus 35 ~~~~vr~~A~~~L~~~~~~-~~~~~L~~~l~---d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~d~~~~vr~~ 110 (280)
T 1oyz_A 35 HNSLKRISSARVLQLRGGQ-DAVRLAIEFCS---DKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRAT 110 (280)
T ss_dssp SSHHHHHHHHHHHHHHCCH-HHHHHHHHHHT---CSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHCSCHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCc-hHHHHHHHHHc---CCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCHHHHHH
Confidence 3444444455555555532 23333333332 3455555556666666653 2333333321 23455555455
Q ss_pred HHHHHHHCCC-----hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 040365 113 IIAGCVQNGL-----FDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMY 187 (514)
Q Consensus 113 li~~~~~~g~-----~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 187 (514)
.+.++.+.+. ...+...+..+.. .|+...-...+.+....++.+ +...+..+.+ .++..+-...+.+.
T Consensus 111 a~~aL~~l~~~~~~~~~~~~~~L~~~l~---d~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL 183 (280)
T 1oyz_A 111 AIESTAQRCKKNPIYSPKIVEQSQITAF---DKSTNVRRATAFAISVINDKA-TIPLLINLLK---DPNGDVRNWAAFAI 183 (280)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHHHTT---CSCHHHHHHHHHHHHTC---C-CHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCcccHHHHHHHHHHhh---CCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 5555555431 2345555544433 356666666666777666533 2333333332 35555555566666
Q ss_pred HhcC--CHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 040365 188 AKCG--NIRLARCIFDKMDLHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSY 265 (514)
Q Consensus 188 ~k~g--~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 265 (514)
++.| ..+-...+...+..++...-...+.++.+.|+.. +...+..+... |+ .-...+.++.+.|.. .+...
T Consensus 184 ~~~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~~~-~~~~L~~~l~d---~~--vr~~a~~aL~~i~~~-~~~~~ 256 (280)
T 1oyz_A 184 NINKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKR-VLSVLCDELKK---NT--VYDDIIEAAGELGDK-TLLPV 256 (280)
T ss_dssp HHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCGG-GHHHHHHHHTS---SS--CCHHHHHHHHHHCCG-GGHHH
T ss_pred HhhccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCHh-hHHHHHHHhcC---cc--HHHHHHHHHHhcCch-hhhHH
Confidence 6655 3333334444455666666666677777777544 44444444432 33 123345555566653 45555
Q ss_pred HHHhHHhcCCCCCHhHHHHHHHHH
Q 040365 266 FNSMTKDYGIAPSFEHYAAVADLL 289 (514)
Q Consensus 266 ~~~m~~~~~~~p~~~~~~~li~~~ 289 (514)
+..+..+ .++.......++.+
T Consensus 257 L~~~l~~---~~~~~~~~~~~~~l 277 (280)
T 1oyz_A 257 LDTMLYK---FDDNEIITSAIDKL 277 (280)
T ss_dssp HHHHHTT---SSCCHHHHHHHHHH
T ss_pred HHHHHhc---CCCcHHHHHHHHHh
Confidence 5555433 34444444444443
No 308
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=35.45 E-value=2.3e+02 Score=25.79 Aligned_cols=141 Identities=13% Similarity=0.122 Sum_probs=79.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhC-C----CCCChhhHHHHH---HHHhCCCChHHHHHHHHHHHHhCCCCchhHHHH
Q 040365 10 NTVIVGLARNGLYEEALNIVRQMGNV-N----LKPDSFTLSSVL---PIFADYVDVIKGKEIHGYAIRHGLDANVCIGSS 81 (514)
Q Consensus 10 ~~li~~~~~~g~~~~A~~l~~~m~~~-g----~~p~~~t~~~ll---~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 81 (514)
|-+...+.-.-.-++|..+|..+... + ..|+.......+ ..+.+.- --+++..+.+.|+.|..++..-
T Consensus 153 ~~i~a~ll~~~~E~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~----~p~L~~hL~~~~i~~~~~~~~W 228 (331)
T 3qye_A 153 SFVAGILLLHMSEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDY----HRDLYNHLEEHEIGPSLYAAPW 228 (331)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHH----CHHHHHHHHHTTCCGGGTSHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHH----HHHHHHHHHHcCCChHHHHHHH
Confidence 33333333333557888888887643 2 234433222221 2222111 1367888888999999999999
Q ss_pred HHHHHHHCCCHHHHHHHHccCC--CCChhHHHH--HHH----HHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 040365 82 LINMYAKCARVEDSHRLFCLLP--VKDAISWNS--IIA----GCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACA 153 (514)
Q Consensus 82 li~~~~~~g~~~~A~~~f~~~~--~~d~~~~~~--li~----~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 153 (514)
++..+++.=.++.+.+++|.+- .+....+-+ ++. ...+..++++.+..++.... ..+......++.-..
T Consensus 229 ~l~lF~~~lp~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~~p---~~~~~di~~li~~A~ 305 (331)
T 3qye_A 229 FLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKSTLP---NLGLVQMEKTINQVF 305 (331)
T ss_dssp HHSTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHTTT---CCCHHHHHHHHHHHH
T ss_pred HHHHhhhhCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCC---CCCHHHHHHHHHHHH
Confidence 9999988888999999998764 223322221 111 12234467777777765322 123445555554444
Q ss_pred ccCC
Q 040365 154 HLTT 157 (514)
Q Consensus 154 ~~~~ 157 (514)
....
T Consensus 306 ~l~~ 309 (331)
T 3qye_A 306 EMDI 309 (331)
T ss_dssp HCCC
T ss_pred hCCc
Confidence 4443
No 309
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=33.97 E-value=14 Score=29.00 Aligned_cols=40 Identities=20% Similarity=0.357 Sum_probs=28.5
Q ss_pred CCeEEEEe----cccccccchhhhHHHhhhcceeEEEecCCcccccCCcccC
Q 040365 462 GTTIRIIK----NLRVCGDCHTAIKFISKIVQREIIVRDNSRFHHFEDGKCS 509 (514)
Q Consensus 462 ~~~~~i~~----nl~~c~d~h~~~~~~s~~~~~~i~~rd~~~~h~f~~g~cs 509 (514)
...+||+. +.++|-+| .++..-..-.++-+||+|+++.|-
T Consensus 44 ~~~~Riv~~~~~~~~vi~n~--------~i~~~~~y~~~~~~Fh~w~~~~~~ 87 (130)
T 1qc6_A 44 SSTFRVVGVKLQDQQVVINY--------SIVKGLKYNQATPTFHQWRDARQV 87 (130)
T ss_dssp TTEEEEEEECTTTCCEEEEE--------ECCTTCEEEEEETTEEEEECSSCE
T ss_pred CcEEEEEEEeCCCCeEEEee--------EEeCCcEEeccCCeeEEEEcCCEE
Confidence 45677764 56777777 444444455789999999999874
No 310
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=33.94 E-value=57 Score=23.78 Aligned_cols=38 Identities=13% Similarity=-0.013 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHH
Q 040365 191 GNIRLARCIFDKMDLHDIVSWTAVIMGNALHGNAHDAI 228 (514)
Q Consensus 191 g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~ 228 (514)
...+.|+++++.++.+...+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46788999999999888899999999987777765554
No 311
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=33.48 E-value=31 Score=24.76 Aligned_cols=47 Identities=17% Similarity=0.176 Sum_probs=32.7
Q ss_pred CChHHHHHHHHHHHHHHHhCCcccCCcccccccchHhHhhhHhhhHHHHHHHHcc
Q 040365 402 PFYHRINEALKELLERMEQEGYVPDTKEVLHDVEEEQKKNLLYYHSERLAIVFGI 456 (514)
Q Consensus 402 ~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~h~e~la~~~~~ 456 (514)
+...++...+++-..+++..|+.||...+-. +...+-+|.+-..||-
T Consensus 13 gdlirIl~~ieekinELk~dG~ePDIiL~G~--------eayef~~e~v~~e~g~ 59 (103)
T 2pk8_A 13 GDLIRILGEIEEKMNELKMDGFNPDIILFGR--------EAYNFLSNLLKKEMEE 59 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCEEEECH--------HHHHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCCeEEEcH--------HHHHHHHHHHhHhhcc
Confidence 3446677788888899999999999765432 2334556666666764
No 312
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=32.03 E-value=4.4e+02 Score=28.31 Aligned_cols=127 Identities=9% Similarity=-0.052 Sum_probs=72.1
Q ss_pred HHHHHHHCCCHHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHH
Q 040365 82 LINMYAKCARVEDSHRLFCLLPVKDAISWNSIIAGCVQNGLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLG 161 (514)
Q Consensus 82 li~~~~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 161 (514)
++.-+...|..+-|.++....+. +...--.+..+|...|++++|.+.|++.- .|+.++...... .+..
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~----------~~~~ 883 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAV----------LREF 883 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGG----------GHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccc----------hhhh
Confidence 66777788999988887777664 44444467788999999999999998853 333322111000 0000
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH----hCCCCCh----hHHHHHHHHHHhCC
Q 040365 162 KQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFD----KMDLHDI----VSWTAVIMGNALHG 222 (514)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~----~m~~~d~----~~~~~li~~~~~~g 222 (514)
..++... + .-.....-|..++..+-+.+.++.+.++-+ .+...|. ..|+.+..+.+..|
T Consensus 884 ~~ll~~~-e-~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 884 QEIAEKY-H-HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHT-T-TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhccCcc-c-ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 0111000 0 001123366777777778887776654433 3333333 35666776665443
No 313
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=30.51 E-value=2.7e+02 Score=25.64 Aligned_cols=59 Identities=10% Similarity=0.105 Sum_probs=33.8
Q ss_pred HHHHHHHHHCCCHHHHHHHHccCCCCC---hhHHHHHHHHHHHCC-ChhHHHHHHHHHHHCCC
Q 040365 80 SSLINMYAKCARVEDSHRLFCLLPVKD---AISWNSIIAGCVQNG-LFDEGLKFFRQMLIAKI 138 (514)
Q Consensus 80 ~~li~~~~~~g~~~~A~~~f~~~~~~d---~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~ 138 (514)
..++.-|...|++++|.+.++++..|. .+...++..++-+.. .-+.+..++..+.+.|+
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~ 77 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGH 77 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCC
Confidence 567777888888888888888887653 122222222222211 12344556666666554
No 314
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=30.40 E-value=89 Score=28.83 Aligned_cols=20 Identities=15% Similarity=0.130 Sum_probs=9.9
Q ss_pred HHHHHCCCHHHHHHHHccCC
Q 040365 84 NMYAKCARVEDSHRLFCLLP 103 (514)
Q Consensus 84 ~~~~~~g~~~~A~~~f~~~~ 103 (514)
...+..|+.+-+..+++.-.
T Consensus 58 ~~A~~~g~~~~v~~Ll~~g~ 77 (364)
T 3ljn_A 58 HLACKFGCVDTAKYLASVGE 77 (364)
T ss_dssp HHHHHHCCHHHHHHHHHHCC
T ss_pred HHHHHcCCHHHHHHHHHCCC
Confidence 33344555555555554433
No 315
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=30.29 E-value=57 Score=23.80 Aligned_cols=38 Identities=13% Similarity=0.078 Sum_probs=31.0
Q ss_pred CCHHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHH
Q 040365 90 ARVEDSHRLFCLLPVKDAISWNSIIAGCVQNGLFDEGL 127 (514)
Q Consensus 90 g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~ 127 (514)
.+.+.|+++++.++.+...+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46788999999999888889999999987777766554
No 316
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=29.79 E-value=1.4e+02 Score=23.50 Aligned_cols=63 Identities=13% Similarity=0.105 Sum_probs=39.1
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHH
Q 040365 232 EQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQ 296 (514)
Q Consensus 232 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 296 (514)
+.+.+.|++++..-. .++..+...+..-.|.++++.+.+. +...+..|.-.-++.+...|-+.
T Consensus 11 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 11 ETLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGK-FPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGG-CTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHh-CCCCChhhHHHHHHHHHHCCCEE
Confidence 345667777765432 3444444455566778888888554 44445666666677788888764
No 317
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=29.52 E-value=1.7e+02 Score=25.18 Aligned_cols=51 Identities=8% Similarity=-0.024 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhcC--CCCcchHHHHHHHHHHccChhHHHHHHHHHHhCCCcc
Q 040365 328 ELAGKVAEKIFMID--PNNMGAYVILSNTYAAARRWKDAASLRVFMRNKGMKK 378 (514)
Q Consensus 328 ~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 378 (514)
+....+|..|...+ ..-+..|...+..+...|++++|.++|+.-.+++-+|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 45667888887654 6667889999999999999999999999888877664
No 318
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=29.16 E-value=1.5e+02 Score=21.13 Aligned_cols=62 Identities=16% Similarity=0.108 Sum_probs=40.8
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHHCCCHHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHH
Q 040365 61 KEIHGYAIRHGLDANVCIGSSLINMYAKCARVEDSHRLFCLLPVKDAISWNSIIAGCVQNGLFDEG 126 (514)
Q Consensus 61 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A 126 (514)
..++..+...|+-.+.. +..+- +.....+.|.++++.++.+...+|..++.++.+.+...-|
T Consensus 25 ~~lld~L~~~~vlt~~~-~e~I~---~~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 25 SYIMDHMISDGFLTISE-EEKVR---NEPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp HHHHHHHHHHTSSCHHH-HHHHH---TSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHCCCCCHHH-HHHHH---cCCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 34666666666433222 22221 1356778899999999888888899999888887765444
No 319
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=28.93 E-value=3.3e+02 Score=24.68 Aligned_cols=26 Identities=12% Similarity=0.227 Sum_probs=15.7
Q ss_pred HHHHHHHHHCCCHHHHHHHHccCCCC
Q 040365 80 SSLINMYAKCARVEDSHRLFCLLPVK 105 (514)
Q Consensus 80 ~~li~~~~~~g~~~~A~~~f~~~~~~ 105 (514)
.+++.-|...|++++|...++++..|
T Consensus 7 ~~ii~EYf~~~d~~Ea~~~l~el~~p 32 (307)
T 2zu6_B 7 TPIIQEYFEHGDTNEVAEMLRDLNLG 32 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCG
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCc
Confidence 34556666666666666666666544
No 320
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.85 E-value=1.6e+02 Score=29.03 Aligned_cols=60 Identities=17% Similarity=0.222 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCC--CCCH--hHH-HHHHHHHHhcCCHHHHHHHHHhC
Q 040365 244 VAFVAVLTACSHAGLIDKAWSYFNSMTKDYGI--APSF--EHY-AAVADLLGRAGKLQEAYEFISNM 305 (514)
Q Consensus 244 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p~~--~~~-~~li~~~~~~g~~~~A~~~~~~m 305 (514)
..++.++.-|.+.+.+++|..+..... +.. .++. ..| -.+...+.-.+++.+|.+.+...
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 456777778888888888888877652 110 1111 122 12345566677888887777654
No 321
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=28.78 E-value=1.9e+02 Score=22.83 Aligned_cols=62 Identities=13% Similarity=0.171 Sum_probs=34.1
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHH
Q 040365 233 QMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQ 296 (514)
Q Consensus 233 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 296 (514)
.+.+.|++++..- ..++..+...+..-.|.++++.+.+. +...+..|.-..++.+...|-+.
T Consensus 17 ~l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 17 SIKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQK-DKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHH-STTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHh-CCCCCHhhHHHHHHHHHHCCcEE
Confidence 3555666655432 23444444555566677777777544 43445555555666777777753
No 322
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=28.56 E-value=1.6e+02 Score=20.96 Aligned_cols=62 Identities=13% Similarity=0.036 Sum_probs=38.6
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHH
Q 040365 162 KQLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMDLHDIVSWTAVIMGNALHGNAHDA 227 (514)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A 227 (514)
..+++.+.+.|+-.... +..+- ......++|.++++.++.+...++..++.++.+.|...-|
T Consensus 25 ~~lld~L~~~~vlt~~~-~e~I~---~~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 25 SYIMDHMISDGFLTISE-EEKVR---NEPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp HHHHHHHHHHTSSCHHH-HHHHH---TSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHCCCCCHHH-HHHHH---cCCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 34555565555322221 11111 1356678888888888888888888888888877764433
No 323
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=28.04 E-value=3e+02 Score=23.91 Aligned_cols=20 Identities=15% Similarity=-0.268 Sum_probs=9.3
Q ss_pred CCCCChhHHHHHHHHHHHCC
Q 040365 102 LPVKDAISWNSIIAGCVQNG 121 (514)
Q Consensus 102 ~~~~d~~~~~~li~~~~~~g 121 (514)
+..++...-...+.++.+.|
T Consensus 63 l~d~~~~vR~~A~~aL~~l~ 82 (280)
T 1oyz_A 63 CSDKNYIRRDIGAFILGQIK 82 (280)
T ss_dssp HTCSSHHHHHHHHHHHHHSC
T ss_pred HcCCCHHHHHHHHHHHHHhc
Confidence 33444444444445555555
No 324
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=27.86 E-value=5.3e+02 Score=27.68 Aligned_cols=105 Identities=9% Similarity=-0.117 Sum_probs=63.1
Q ss_pred HHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhCCC---CCC---------------
Q 040365 249 VLTACSHAGLIDKAWSYFNSMTKDYGIAPSFEHYAAVADLLGRAGKLQEAYEFISNMHA---GPT--------------- 310 (514)
Q Consensus 249 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~p~--------------- 310 (514)
++..|...|..+-+.++.... +.++..--.+..+|...|++++|.+.|++.-. .++
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~------~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGC------CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhc------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCc
Confidence 566677777777665543322 22333333567778899999999999987631 010
Q ss_pred -------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCcc----hHHHHHHHHHHcc
Q 040365 311 -------ENVWLTLLSACRVHKNVELAGKVAEKIFMI-DPNNMG----AYVILSNTYAAAR 359 (514)
Q Consensus 311 -------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~p~~~~----~~~~l~~~~~~~g 359 (514)
..-|..++..+.+++-++-+.++.+.+++. .+++.. .|..+..+++..|
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 113566667777788888888887777763 344432 4444455444433
No 325
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=27.85 E-value=98 Score=27.46 Aligned_cols=177 Identities=11% Similarity=0.020 Sum_probs=85.7
Q ss_pred hCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHCCCHHHHHHHHccCCCC---ChhHHHHHHHHHHHCCChhHHHH
Q 040365 52 ADYVDVIKGKEIHGYAIRHGLDANVCIGSSLINMYAKCARVEDSHRLFCLLPVK---DAISWNSIIAGCVQNGLFDEGLK 128 (514)
Q Consensus 52 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---d~~~~~~li~~~~~~g~~~~A~~ 128 (514)
+..|+.+-. +.+++.|..++..-..+.+...+..|+.+-+..+++.-..+ |..-++.|.. .+..|+.+-+.-
T Consensus 39 ~~~g~~~~v----~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~-A~~~g~~~~v~~ 113 (285)
T 3kea_A 39 IADNNVRLV----CTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYY-AVDSGNMQTVKL 113 (285)
T ss_dssp HHTTCHHHH----HHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHH-HHHTTCHHHHHH
T ss_pred HHcCCHHHH----HHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHH-HHHcCCHHHHHH
Confidence 345665543 34445554444333344555566777777777777653322 3223333333 345565544333
Q ss_pred HHHHHHHCCCCCCHHHH---HHHHHHHhccCChHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 040365 129 FFRQMLIAKIKPRHVSF---SSIMPACAHLTTLHLGKQLHGCIIRNGFDD-NMFIASSLLDMYAKCGNIRLARCIFDKMD 204 (514)
Q Consensus 129 l~~~m~~~g~~p~~~t~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~y~k~g~~~~A~~~~~~m~ 204 (514)
++ +.|..++.... .+.+...+..|+.+-++. +++.|..+ +.....+.+...+..|+.+-+.-+++.-.
T Consensus 114 Ll----~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~----Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga 185 (285)
T 3kea_A 114 FV----KKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSY----FLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMT 185 (285)
T ss_dssp HH----HHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHH----HHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HH----hcCCCCCccCCCCCCCHHHHHHHcCCHHHHHH----HHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCC
Confidence 33 33444433221 233444455566554433 34444322 22133445556667788877777765432
Q ss_pred ---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHH
Q 040365 205 ---LHDIVSWTAVIMGNALHGNAHDAISLFEQMEKDGVKPNSVA 245 (514)
Q Consensus 205 ---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 245 (514)
.+|..-++..+...+..|+. ++.+.+.+.|..|+...
T Consensus 186 d~n~~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 186 STNTNNSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSAN 225 (285)
T ss_dssp HTCTTCCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTTT
T ss_pred CCCcccCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCCC
Confidence 22322233322233345553 44555666787776654
No 326
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=27.13 E-value=89 Score=23.80 Aligned_cols=43 Identities=7% Similarity=0.005 Sum_probs=30.4
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc
Q 040365 129 FFRQMLIAKIKPRHVSFSSIMPACAHLTTLHLGKQLHGCIIRN 171 (514)
Q Consensus 129 l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 171 (514)
+|+.+....+.|+...-..-+..+...++++.|.++|..+...
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 5666666667666555555555667788999999998887653
No 327
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=26.60 E-value=1.3e+02 Score=25.19 Aligned_cols=82 Identities=15% Similarity=0.044 Sum_probs=42.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCChh----hHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchh--HHHHHHHH
Q 040365 12 VIVGLARNGLYEEALNIVRQMGNVNLKPDSF----TLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANVC--IGSSLINM 85 (514)
Q Consensus 12 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~ 85 (514)
.+...++.|+.+- ++.+.+.|..++.. ..+. +...+..|+.+ +.+.+++.|..++.. ...+.+..
T Consensus 45 ~L~~A~~~~~~~~----v~~Ll~~~~~~~~~~~~~~~t~-L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~ 115 (240)
T 3eu9_A 45 LLHWAAINNRIDL----VKYYISKGAIVDQLGGDLNSTP-LHWATRQGHLS----MVVQLMKYGADPSLIDGEGCSCIHL 115 (240)
T ss_dssp HHHHHHHTTCHHH----HHHHHHTTCCTTCCBTTTTBCH-HHHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred HHHHHHHhCCHHH----HHHHHHcCCcchhhcCCcCCCh-hHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHHHH
Confidence 3445566676644 44444555433321 2223 33333445554 455566667555432 12234455
Q ss_pred HHHCCCHHHHHHHHccC
Q 040365 86 YAKCARVEDSHRLFCLL 102 (514)
Q Consensus 86 ~~~~g~~~~A~~~f~~~ 102 (514)
.++.|+.+-+..+++.-
T Consensus 116 A~~~~~~~~~~~Ll~~~ 132 (240)
T 3eu9_A 116 AAQFGHTSIVAYLIAKG 132 (240)
T ss_dssp HHHTTCHHHHHHHHHTT
T ss_pred HHHcCHHHHHHHHHhcC
Confidence 56778888777777653
No 328
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=25.64 E-value=16 Score=21.77 Aligned_cols=11 Identities=36% Similarity=0.924 Sum_probs=8.9
Q ss_pred cccccccchhh
Q 040365 470 NLRVCGDCHTA 480 (514)
Q Consensus 470 nl~~c~d~h~~ 480 (514)
+.|+|.+|+.-
T Consensus 16 ~YRvC~~CgkP 26 (44)
T 2lo3_A 16 QYRVCEKCGKP 26 (44)
T ss_dssp CEEECTTTCCE
T ss_pred cchhhcccCCc
Confidence 56999999854
No 329
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=25.05 E-value=1.5e+02 Score=23.78 Aligned_cols=78 Identities=8% Similarity=-0.015 Sum_probs=52.4
Q ss_pred CCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCch-hHHHHHHHHHHHCCCHHHHHHHHccCCCCChhHHHHHHH
Q 040365 37 LKPDSFTLSSVLPIFADYVDVIKGKEIHGYAIRHGLDANV-CIGSSLINMYAKCARVEDSHRLFCLLPVKDAISWNSIIA 115 (514)
Q Consensus 37 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~f~~~~~~d~~~~~~li~ 115 (514)
.+.|..-...-+...-.. .....+|..|...|+.... ..|.+....+...|++.+|.++|+.-.+.+......|..
T Consensus 64 YknD~RyLklWl~ya~~~---~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~ 140 (152)
T 4a1g_A 64 YHNDPRFISYCLKFAEYN---SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFLQQ 140 (152)
T ss_dssp GTTCHHHHHHHHHHHTTB---SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHH
T ss_pred ccCCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHH
Confidence 345655444444333222 3378899999998876554 457888888899999999999998766555555555554
Q ss_pred HH
Q 040365 116 GC 117 (514)
Q Consensus 116 ~~ 117 (514)
.|
T Consensus 141 ~~ 142 (152)
T 4a1g_A 141 QY 142 (152)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 330
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=24.92 E-value=1.9e+02 Score=22.63 Aligned_cols=59 Identities=5% Similarity=-0.005 Sum_probs=24.2
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Q 040365 133 MLIAKIKPRHVSFSSIMPACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGN 192 (514)
Q Consensus 133 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~ 192 (514)
+.+.|++++..-. .++..+...+..-.|.++++.+.+.+...+..+..--++.+...|-
T Consensus 13 l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 13 LKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 3444444443332 2233333333344455555555444333333333333444444443
No 331
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=24.82 E-value=1e+02 Score=26.97 Aligned_cols=98 Identities=6% Similarity=-0.054 Sum_probs=56.8
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC-------ChhhHHHHHHHHh--CCCChHHHHHHHHHHHHhC---
Q 040365 4 SDLVSWNTVIVGLARNGLYEEALNIVRQMGNVNLKP-------DSFTLSSVLPIFA--DYVDVIKGKEIHGYAIRHG--- 71 (514)
Q Consensus 4 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-------~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g--- 71 (514)
+|..-++.|.. .++.|+.+....+++.....+... |..-.+.+..++. +.|+.+-++.+++.-...+
T Consensus 9 ~d~~g~t~L~~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~ 87 (273)
T 2pnn_A 9 PRLYDRRSIFD-AVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLK 87 (273)
T ss_dssp --CCCHHHHHH-HHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHH
T ss_pred CCcccchHHHH-HHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchh
Confidence 34555565554 466789988888888776655332 3344555666664 3577777776666543211
Q ss_pred ------CC-CchhHHHHHHHHHHHCCCHHHHHHHHccCC
Q 040365 72 ------LD-ANVCIGSSLINMYAKCARVEDSHRLFCLLP 103 (514)
Q Consensus 72 ------~~-~~~~~~~~li~~~~~~g~~~~A~~~f~~~~ 103 (514)
.. .|.. ..+.+...++.|+.+-+..+++.-.
T Consensus 88 ~~i~~~~~~~d~~-g~tpL~~A~~~g~~~~v~~Ll~~ga 125 (273)
T 2pnn_A 88 QFVNASYTDSYYK-GQTALHIAIERRNMTLVTLLVENGA 125 (273)
T ss_dssp HHHTCCCCSTTTT-TCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHhhcccccccCC-CCCHHHHHHHcCCHHHHHHHHHCCC
Confidence 11 1112 2234444567888888888887644
No 332
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=24.78 E-value=1.6e+02 Score=23.67 Aligned_cols=71 Identities=13% Similarity=0.140 Sum_probs=42.7
Q ss_pred HHHHHHHHH-HHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhc-CCCCCHhHHHHHHHHHHhcCCHH
Q 040365 225 HDAISLFEQ-MEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTKDY-GIAPSFEHYAAVADLLGRAGKLQ 296 (514)
Q Consensus 225 ~~A~~l~~~-m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-~~~p~~~~~~~li~~~~~~g~~~ 296 (514)
+.+++-+.+ +.+.|++++.. -..++..+...+..-.|.++++.+.+.. +...+..|.-.-++.+...|-+.
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 444544444 44577777653 3445666666667777888888885431 23345555555567788888763
No 333
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=24.68 E-value=2.9e+02 Score=22.92 Aligned_cols=17 Identities=24% Similarity=0.257 Sum_probs=9.2
Q ss_pred HHHHCCCHHHHHHHHcc
Q 040365 85 MYAKCARVEDSHRLFCL 101 (514)
Q Consensus 85 ~~~~~g~~~~A~~~f~~ 101 (514)
..++.|+.+....+++.
T Consensus 9 ~A~~~g~~~~v~~Ll~~ 25 (232)
T 2rfa_A 9 LAAKENDVQALSKLLKF 25 (232)
T ss_dssp HHHHTTCHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHh
Confidence 33455566555555554
No 334
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=24.44 E-value=1.9e+02 Score=26.49 Aligned_cols=81 Identities=7% Similarity=-0.178 Sum_probs=36.9
Q ss_pred HHHhcCCHHHHHHHHHhCCC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccC
Q 040365 288 LLGRAGKLQEAYEFISNMHA-------GPTENVWLTLLSACRVHKNVELAGKVAEKIFMIDPNNMGAYVILSNTYAAARR 360 (514)
Q Consensus 288 ~~~~~g~~~~A~~~~~~m~~-------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 360 (514)
..++.|+.+-+..+++.-.. ..|..-++.|. ..+..|+.+.+..+++.-...+..+..-... +..-+..|.
T Consensus 179 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~-~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tp-L~~A~~~g~ 256 (364)
T 3ljn_A 179 RAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLH-WAILINWEDVAMRFVEMGIDVNMEDNEHTVP-LYLSVRAAM 256 (364)
T ss_dssp HHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTH-HHHTTTCHHHHHHHHTTTCCTTCCCTTSCCH-HHHHHHTCC
T ss_pred HHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHH-HHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH-HHHHHHhCh
Confidence 34566777777667664321 12222222333 3346677665555544322222222211122 223345577
Q ss_pred hhHHHHHHHH
Q 040365 361 WKDAASLRVF 370 (514)
Q Consensus 361 ~~~a~~~~~~ 370 (514)
.+-+.-+++.
T Consensus 257 ~~~v~~Ll~~ 266 (364)
T 3ljn_A 257 VLLTKELLQK 266 (364)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 6666666554
No 335
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=23.11 E-value=4.2e+02 Score=23.99 Aligned_cols=42 Identities=17% Similarity=0.259 Sum_probs=25.9
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 040365 163 QLHGCIIRNGFDDNMFIASSLLDMYAKCGNIRLARCIFDKMD 204 (514)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~ 204 (514)
+++..+.+.|+.|......-++..+...=.++.+.++++...
T Consensus 209 ~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l 250 (331)
T 3qye_A 209 DLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIF 250 (331)
T ss_dssp HHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHH
Confidence 455555666666666666666666666556666666666553
No 336
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=22.53 E-value=1.2e+02 Score=22.97 Aligned_cols=42 Identities=19% Similarity=-0.019 Sum_probs=30.3
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHH
Q 040365 230 LFEQMEKDGVKPNSVAFVAVLTACSHAGLIDKAWSYFNSMTK 271 (514)
Q Consensus 230 l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 271 (514)
+|+.+....+.|+...-..-+..+...++++.|..++..+..
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 566666666766666555556666778899999999887754
No 337
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=22.09 E-value=1.1e+02 Score=26.40 Aligned_cols=92 Identities=8% Similarity=-0.055 Sum_probs=51.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCCh-------hhHHHHHHHHhC--CCChHHHHHHHHHHHHhCCCC--------
Q 040365 12 VIVGLARNGLYEEALNIVRQMGNVNLKPDS-------FTLSSVLPIFAD--YVDVIKGKEIHGYAIRHGLDA-------- 74 (514)
Q Consensus 12 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~g~~~-------- 74 (514)
.+...++.|+.+....+++.+...|..++. .-.+.+..|+.. .|+.+-.+.+++.-...+...
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~ 84 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCT 84 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccc
Confidence 344556778888777777777776655443 334444444432 266666655555443332111
Q ss_pred ch-hHHHHHHHHHHHCCCHHHHHHHHccCC
Q 040365 75 NV-CIGSSLINMYAKCARVEDSHRLFCLLP 103 (514)
Q Consensus 75 ~~-~~~~~li~~~~~~g~~~~A~~~f~~~~ 103 (514)
+. ....+.+...+..|+.+-+..+++.-.
T Consensus 85 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga 114 (256)
T 2etb_A 85 DEFYQGHSALHIAIEKRSLQCVKLLVENGA 114 (256)
T ss_dssp STTTTTCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred cccccCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 00 112334445567788887777776643
No 338
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=22.05 E-value=81 Score=24.55 Aligned_cols=17 Identities=24% Similarity=0.378 Sum_probs=8.7
Q ss_pred HHHhcCChhHHHHHHHH
Q 040365 15 GLARNGLYEEALNIVRQ 31 (514)
Q Consensus 15 ~~~~~g~~~~A~~l~~~ 31 (514)
..++.|+.+.+..+++.
T Consensus 8 ~A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 8 GAAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHHTCHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHh
Confidence 34445555555555544
No 339
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=21.84 E-value=2.8e+02 Score=21.83 Aligned_cols=62 Identities=13% Similarity=0.128 Sum_probs=38.5
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccC-ChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCH
Q 040365 131 RQMLIAKIKPRHVSFSSIMPACAHLT-TLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGNI 193 (514)
Q Consensus 131 ~~m~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~ 193 (514)
+.|.+.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|.---++.+...|-+
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 345667777776554 3455555555 5667888888888776555554444445566666643
No 340
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=21.00 E-value=2.8e+02 Score=21.79 Aligned_cols=59 Identities=8% Similarity=0.018 Sum_probs=25.9
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Q 040365 133 MLIAKIKPRHVSFSSIMPACAHLTTLHLGKQLHGCIIRNGFDDNMFIASSLLDMYAKCGN 192 (514)
Q Consensus 133 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~ 192 (514)
+.+.|++++..-. .++..+...+..-.|.++++.+.+.+...+..+.---++.+...|-
T Consensus 18 l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 18 IKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 4445554443332 2333333344455556666666555433333333334445555554
No 341
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=20.57 E-value=3.8e+02 Score=22.51 Aligned_cols=89 Identities=8% Similarity=0.043 Sum_probs=0.0
Q ss_pred HHHHHHHC---CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-----hHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 040365 113 IIAGCVQN---GLFDEGLKFFRQMLIAKIKPRHVSFSSIMPACAHLTT-----LHLGKQLHGCIIRNGFDDNMFIASSLL 184 (514)
Q Consensus 113 li~~~~~~---g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~~li 184 (514)
+|+++.++ .+++.|+-.+.+|.+.| .|..+.=..++-+.-..|. +..|...++.....|.+--.....-.+
T Consensus 17 ~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~Laqav 95 (204)
T 2r9g_A 17 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPEARIPLADVV 95 (204)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTTTHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q ss_pred HHHHhcCCHHHHHHHHHh
Q 040365 185 DMYAKCGNIRLARCIFDK 202 (514)
Q Consensus 185 ~~y~k~g~~~~A~~~~~~ 202 (514)
--++.+-+-..+...++.
T Consensus 96 iyLA~aPKSNs~y~A~~~ 113 (204)
T 2r9g_A 96 VDLCLSPKSNSAYMALDA 113 (204)
T ss_dssp HHHHHSCCCCHHHHHHHH
T ss_pred HHHHcCCccHHHHHHHHH
No 342
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=20.36 E-value=3.1e+02 Score=24.85 Aligned_cols=23 Identities=17% Similarity=0.326 Sum_probs=15.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHH
Q 040365 10 NTVIVGLARNGLYEEALNIVRQM 32 (514)
Q Consensus 10 ~~li~~~~~~g~~~~A~~l~~~m 32 (514)
.++|.-|...|+.++|...++++
T Consensus 7 ~~ii~EYf~~~d~~Ea~~~l~el 29 (307)
T 2zu6_B 7 TPIIQEYFEHGDTNEVAEMLRDL 29 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Confidence 45666666667777776666665
No 343
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=20.07 E-value=4e+02 Score=22.70 Aligned_cols=69 Identities=13% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHhcCCCCCH------hHHHHHHHHHHhcCCHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCH
Q 040365 259 IDKAWSYFNSMTKDYGIAPSF------EHYAAVADLLGRAGKLQEAYEFISN-MHAGPTENVWLTLLSACRVHKNV 327 (514)
Q Consensus 259 ~~~a~~~~~~m~~~~~~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~-m~~~p~~~~~~~ll~~~~~~~~~ 327 (514)
++.|+.+|+.+.+...+..+. ..--..+-.|.+.|.+++|.+++++ +...|+..-....+....+.+|.
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd~ 163 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKNL 163 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCc
Done!