Query 040367
Match_columns 400
No_of_seqs 635 out of 1513
Neff 12.2
Searched_HMMs 46136
Date Fri Mar 29 07:45:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040367.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040367hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 2.1E-63 4.5E-68 460.4 50.0 395 2-400 391-799 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 2.7E-63 5.8E-68 459.7 50.4 385 15-399 435-856 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 3.2E-58 6.9E-63 423.1 41.5 384 2-400 108-504 (697)
4 PLN03077 Protein ECB2; Provisi 100.0 8.6E-57 1.9E-61 423.1 41.1 370 15-400 251-667 (857)
5 PLN03081 pentatricopeptide (PP 100.0 7.2E-56 1.6E-60 407.5 41.1 374 15-400 85-472 (697)
6 PLN03077 Protein ECB2; Provisi 100.0 6.6E-56 1.4E-60 417.2 40.6 387 4-400 210-635 (857)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.4E-27 3.1E-32 230.1 46.1 382 2-397 486-878 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 2.6E-27 5.6E-32 228.4 47.7 357 16-383 464-831 (899)
9 PRK11788 tetratricopeptide rep 99.9 1.7E-23 3.7E-28 181.7 35.8 299 62-390 45-353 (389)
10 PRK11788 tetratricopeptide rep 99.9 3.1E-23 6.7E-28 180.1 36.3 316 20-371 38-363 (389)
11 KOG4626 O-linked N-acetylgluco 99.9 1.3E-23 2.8E-28 175.9 30.4 362 15-390 114-489 (966)
12 PRK15174 Vi polysaccharide exp 99.9 1.8E-21 3.9E-26 177.0 42.8 332 19-383 44-380 (656)
13 TIGR00990 3a0801s09 mitochondr 99.9 8.1E-21 1.8E-25 173.4 46.4 357 20-384 130-571 (615)
14 PRK11447 cellulose synthase su 99.9 1.8E-21 4E-26 188.8 43.4 371 3-382 291-738 (1157)
15 PRK15174 Vi polysaccharide exp 99.9 1.2E-20 2.6E-25 171.7 43.2 347 3-382 64-418 (656)
16 PRK10049 pgaA outer membrane p 99.9 2E-20 4.4E-25 173.8 45.0 379 3-392 37-462 (765)
17 KOG4626 O-linked N-acetylgluco 99.9 5.2E-21 1.1E-25 160.5 33.7 350 2-365 137-500 (966)
18 PRK11447 cellulose synthase su 99.9 2.2E-19 4.8E-24 174.4 47.5 371 3-383 50-523 (1157)
19 TIGR00990 3a0801s09 mitochondr 99.9 3.5E-19 7.6E-24 162.7 42.8 328 54-390 129-541 (615)
20 PRK10049 pgaA outer membrane p 99.9 6.8E-18 1.5E-22 157.1 44.2 364 16-390 14-426 (765)
21 PRK14574 hmsH outer membrane p 99.9 3.1E-17 6.7E-22 150.2 44.7 375 2-384 55-513 (822)
22 PRK09782 bacteriophage N4 rece 99.9 5.4E-17 1.2E-21 151.6 43.0 117 263-383 589-705 (987)
23 PRK14574 hmsH outer membrane p 99.8 6.7E-16 1.5E-20 141.5 44.0 363 19-390 36-483 (822)
24 KOG4422 Uncharacterized conser 99.8 5E-16 1.1E-20 125.3 36.9 347 15-386 205-592 (625)
25 KOG2002 TPR-containing nuclear 99.8 1.3E-16 2.8E-21 141.0 34.0 389 3-396 258-757 (1018)
26 KOG2003 TPR repeat-containing 99.8 4.3E-17 9.2E-22 132.6 27.2 366 25-399 209-703 (840)
27 PRK09782 bacteriophage N4 rece 99.8 5.4E-15 1.2E-19 138.4 41.2 253 121-383 476-739 (987)
28 KOG2076 RNA polymerase III tra 99.8 1.3E-14 2.8E-19 127.6 37.9 360 19-383 141-554 (895)
29 KOG4422 Uncharacterized conser 99.8 2.1E-14 4.6E-19 116.1 34.7 310 50-384 205-551 (625)
30 KOG1915 Cell cycle control pro 99.8 8.8E-14 1.9E-18 114.0 38.3 380 2-396 94-546 (677)
31 PF13429 TPR_15: Tetratricopep 99.8 9.2E-18 2E-22 138.3 14.2 161 182-345 112-273 (280)
32 KOG2003 TPR repeat-containing 99.8 1.8E-14 3.8E-19 117.6 32.0 340 19-370 278-709 (840)
33 PF13429 TPR_15: Tetratricopep 99.8 1.1E-17 2.4E-22 137.8 13.9 262 92-383 13-276 (280)
34 TIGR00540 hemY_coli hemY prote 99.8 1.9E-14 4.2E-19 124.6 34.2 289 63-383 95-398 (409)
35 KOG1155 Anaphase-promoting com 99.8 2.1E-13 4.5E-18 111.5 37.4 366 16-398 163-548 (559)
36 PRK10747 putative protoheme IX 99.8 2.5E-14 5.4E-19 123.3 34.2 290 30-348 97-389 (398)
37 PRK10747 putative protoheme IX 99.8 3.5E-14 7.6E-19 122.4 35.0 284 64-383 96-389 (398)
38 KOG1126 DNA-binding cell divis 99.8 2.2E-15 4.7E-20 128.3 26.2 290 67-390 334-626 (638)
39 KOG2002 TPR-containing nuclear 99.8 3.8E-14 8.3E-19 125.7 34.3 375 4-385 365-799 (1018)
40 TIGR00540 hemY_coli hemY prote 99.8 4.1E-14 8.9E-19 122.6 34.4 293 28-348 95-398 (409)
41 COG2956 Predicted N-acetylgluc 99.7 2.2E-14 4.8E-19 111.7 27.4 300 19-349 38-347 (389)
42 COG2956 Predicted N-acetylgluc 99.7 9.7E-14 2.1E-18 108.2 29.0 287 65-384 48-347 (389)
43 KOG1126 DNA-binding cell divis 99.7 1.7E-14 3.7E-19 122.9 26.0 289 31-352 333-623 (638)
44 KOG0495 HAT repeat protein [RN 99.7 2.5E-12 5.5E-17 109.7 37.6 361 15-383 477-879 (913)
45 KOG2076 RNA polymerase III tra 99.7 5.1E-13 1.1E-17 117.8 34.1 322 57-382 144-510 (895)
46 KOG0547 Translocase of outer m 99.7 4.4E-13 9.6E-18 110.3 31.5 354 20-383 118-565 (606)
47 COG3071 HemY Uncharacterized e 99.7 1.3E-12 2.9E-17 105.0 33.3 294 30-349 97-390 (400)
48 COG3071 HemY Uncharacterized e 99.7 3.3E-12 7.2E-17 102.8 33.3 293 64-389 96-395 (400)
49 KOG1155 Anaphase-promoting com 99.7 1.5E-12 3.2E-17 106.6 30.6 299 59-383 234-552 (559)
50 KOG0495 HAT repeat protein [RN 99.7 1.8E-11 3.9E-16 104.7 38.0 373 3-384 428-846 (913)
51 KOG1915 Cell cycle control pro 99.7 1.8E-11 3.9E-16 100.8 35.0 359 16-383 72-499 (677)
52 PRK12370 invasion protein regu 99.6 3.8E-12 8.2E-17 114.7 30.0 268 49-349 253-535 (553)
53 KOG1173 Anaphase-promoting com 99.6 1.4E-11 3.1E-16 103.5 30.3 282 86-398 243-530 (611)
54 PF12569 NARP1: NMDA receptor- 99.6 8.6E-11 1.9E-15 102.6 36.1 295 23-348 10-333 (517)
55 KOG3785 Uncharacterized conser 99.6 3.7E-12 8E-17 100.9 23.9 199 185-394 290-498 (557)
56 PRK12370 invasion protein regu 99.6 1.3E-11 2.8E-16 111.3 30.9 278 84-385 253-536 (553)
57 TIGR02521 type_IV_pilW type IV 99.6 8.5E-12 1.8E-16 100.5 26.7 201 179-383 30-231 (234)
58 TIGR02521 type_IV_pilW type IV 99.5 2.5E-11 5.3E-16 97.8 26.7 203 120-349 29-232 (234)
59 KOG1173 Anaphase-promoting com 99.5 9.3E-11 2E-15 98.7 28.4 286 50-366 242-533 (611)
60 KOG0547 Translocase of outer m 99.5 4.4E-10 9.5E-15 93.1 31.4 322 55-384 118-491 (606)
61 KOG1840 Kinesin light chain [C 99.5 3.4E-11 7.4E-16 103.8 26.3 244 52-312 199-477 (508)
62 KOG2047 mRNA splicing factor [ 99.5 3.2E-09 7E-14 91.1 37.3 72 4-79 125-196 (835)
63 KOG1840 Kinesin light chain [C 99.5 2.9E-11 6.3E-16 104.2 25.5 245 87-347 199-477 (508)
64 KOG1129 TPR repeat-containing 99.5 6.8E-12 1.5E-16 98.3 19.0 232 89-349 225-458 (478)
65 KOG4318 Bicoid mRNA stability 99.5 1.3E-11 2.9E-16 108.9 22.6 332 5-382 14-368 (1088)
66 KOG4318 Bicoid mRNA stability 99.5 5.1E-11 1.1E-15 105.3 25.6 280 38-341 11-292 (1088)
67 KOG1129 TPR repeat-containing 99.5 3.4E-11 7.3E-16 94.5 21.6 234 126-390 227-462 (478)
68 PF12569 NARP1: NMDA receptor- 99.5 3.4E-09 7.3E-14 92.8 34.4 281 16-313 37-333 (517)
69 KOG1914 mRNA cleavage and poly 99.4 3.1E-08 6.6E-13 83.5 37.4 86 5-96 10-95 (656)
70 KOG1174 Anaphase-promoting com 99.4 1.1E-08 2.3E-13 83.4 33.3 281 100-390 209-504 (564)
71 KOG4162 Predicted calmodulin-b 99.4 8.1E-09 1.8E-13 90.5 34.5 366 15-384 321-783 (799)
72 KOG2376 Signal recognition par 99.4 1.4E-08 3E-13 86.4 33.6 371 19-400 14-502 (652)
73 PRK11189 lipoprotein NlpI; Pro 99.4 1.3E-09 2.8E-14 90.1 27.0 226 159-394 40-274 (296)
74 PF13041 PPR_2: PPR repeat fam 99.4 9.2E-13 2E-17 76.5 6.0 50 15-64 1-50 (50)
75 KOG1174 Anaphase-promoting com 99.4 2.2E-09 4.8E-14 87.2 26.6 278 29-314 208-500 (564)
76 PF13041 PPR_2: PPR repeat fam 99.4 9E-13 1.9E-17 76.5 5.6 47 353-399 1-47 (50)
77 KOG1156 N-terminal acetyltrans 99.4 4.4E-08 9.6E-13 84.4 34.7 344 27-386 51-470 (700)
78 COG3063 PilF Tfp pilus assembl 99.4 3.6E-09 7.7E-14 79.4 24.6 210 182-397 37-247 (250)
79 cd05804 StaR_like StaR_like; a 99.4 3.8E-08 8.3E-13 84.6 34.8 310 52-384 6-336 (355)
80 PRK11189 lipoprotein NlpI; Pro 99.4 4.9E-09 1.1E-13 86.8 27.8 227 101-360 40-275 (296)
81 COG3063 PilF Tfp pilus assembl 99.4 4.5E-09 9.8E-14 78.8 24.3 200 54-279 37-236 (250)
82 KOG0548 Molecular co-chaperone 99.4 1.3E-08 2.9E-13 85.6 29.7 358 25-393 10-462 (539)
83 KOG2047 mRNA splicing factor [ 99.3 1.6E-07 3.4E-12 81.0 35.7 150 54-209 104-277 (835)
84 KOG4340 Uncharacterized conser 99.3 2E-09 4.3E-14 83.8 22.0 292 19-345 12-335 (459)
85 cd05804 StaR_like StaR_like; a 99.3 8.5E-08 1.9E-12 82.5 34.0 307 16-349 5-336 (355)
86 KOG2376 Signal recognition par 99.3 1.3E-07 2.9E-12 80.7 32.0 363 5-381 36-517 (652)
87 KOG0624 dsRNA-activated protei 99.2 4.5E-07 9.7E-12 72.5 31.3 190 189-383 164-369 (504)
88 PF04733 Coatomer_E: Coatomer 99.2 2.1E-09 4.5E-14 87.6 18.6 149 189-348 111-264 (290)
89 KOG1156 N-terminal acetyltrans 99.2 6.7E-07 1.5E-11 77.4 33.4 352 17-385 8-435 (700)
90 PF04733 Coatomer_E: Coatomer 99.2 2.6E-09 5.6E-14 87.1 17.3 149 224-383 111-264 (290)
91 KOG4340 Uncharacterized conser 99.2 3.3E-07 7.2E-12 71.7 27.4 153 16-176 43-209 (459)
92 KOG4162 Predicted calmodulin-b 99.2 1.6E-06 3.4E-11 76.7 33.4 347 45-396 316-760 (799)
93 KOG1125 TPR repeat-containing 99.2 2.5E-08 5.5E-13 84.7 21.9 252 95-377 293-564 (579)
94 PRK04841 transcriptional regul 99.1 1.1E-06 2.3E-11 85.5 36.0 364 20-385 344-761 (903)
95 KOG0624 dsRNA-activated protei 99.1 1.4E-06 3E-11 69.7 33.3 318 15-349 36-370 (504)
96 KOG3785 Uncharacterized conser 99.1 1.6E-07 3.5E-12 75.3 23.9 344 24-381 29-454 (557)
97 KOG1125 TPR repeat-containing 99.1 7.9E-08 1.7E-12 81.8 23.3 262 60-342 293-564 (579)
98 KOG1128 Uncharacterized conser 99.1 8.5E-08 1.8E-12 83.9 22.8 191 181-383 425-615 (777)
99 PRK10370 formate-dependent nit 99.1 1E-07 2.3E-12 73.4 21.2 154 131-288 25-181 (198)
100 KOG1070 rRNA processing protei 99.1 1.1E-07 2.4E-12 88.9 23.5 209 177-390 1455-1669(1710)
101 PLN02789 farnesyltranstransfer 99.0 1.3E-06 2.9E-11 72.4 27.0 241 136-390 34-306 (320)
102 PRK04841 transcriptional regul 99.0 4.2E-06 9E-11 81.5 34.7 310 24-349 416-760 (903)
103 KOG1070 rRNA processing protei 99.0 6.8E-07 1.5E-11 83.9 26.5 235 49-311 1455-1697(1710)
104 PRK10370 formate-dependent nit 99.0 2.3E-07 5.1E-12 71.5 19.3 119 228-349 52-173 (198)
105 PLN02789 farnesyltranstransfer 99.0 3.8E-06 8.3E-11 69.7 27.4 126 20-148 40-168 (320)
106 COG5010 TadD Flp pilus assembl 99.0 4.7E-07 1E-11 69.7 20.2 164 214-382 66-229 (257)
107 KOG1128 Uncharacterized conser 99.0 2.4E-06 5.3E-11 75.1 26.6 235 48-296 394-634 (777)
108 KOG0548 Molecular co-chaperone 99.0 1.3E-05 2.8E-10 68.2 29.6 331 2-349 23-455 (539)
109 TIGR03302 OM_YfiO outer membra 98.9 6.7E-07 1.4E-11 71.9 21.3 188 177-384 30-232 (235)
110 TIGR03302 OM_YfiO outer membra 98.9 7E-07 1.5E-11 71.8 20.9 173 157-349 45-232 (235)
111 KOG0985 Vesicle coat protein c 98.9 2.6E-05 5.7E-10 71.5 31.1 325 15-382 950-1306(1666)
112 KOG1127 TPR repeat-containing 98.9 2E-06 4.3E-11 78.2 24.2 358 17-380 492-909 (1238)
113 PRK14720 transcript cleavage f 98.9 3.6E-06 7.8E-11 78.0 26.5 84 179-279 115-198 (906)
114 KOG3617 WD40 and TPR repeat-co 98.9 6.9E-06 1.5E-10 73.5 26.9 317 16-382 756-1107(1416)
115 KOG3081 Vesicle coat complex C 98.9 1.1E-05 2.5E-10 62.3 24.6 156 183-349 111-271 (299)
116 KOG3081 Vesicle coat complex C 98.9 6.3E-06 1.4E-10 63.7 22.8 249 95-383 16-270 (299)
117 PRK15359 type III secretion sy 98.9 2E-07 4.4E-12 67.9 14.5 104 20-126 27-130 (144)
118 COG4783 Putative Zn-dependent 98.9 2.4E-05 5.3E-10 65.9 27.8 211 158-393 250-462 (484)
119 COG5010 TadD Flp pilus assembl 98.8 2.6E-06 5.6E-11 65.8 20.1 129 179-310 99-227 (257)
120 PRK15359 type III secretion sy 98.8 7.3E-07 1.6E-11 65.0 16.7 93 255-349 29-121 (144)
121 PRK14720 transcript cleavage f 98.8 5.7E-06 1.2E-10 76.8 25.6 131 11-147 25-174 (906)
122 PRK15179 Vi polysaccharide bio 98.8 5.9E-06 1.3E-10 75.8 25.2 148 211-362 82-229 (694)
123 KOG1914 mRNA cleavage and poly 98.8 5.9E-05 1.3E-09 64.5 35.1 375 3-383 41-500 (656)
124 KOG1127 TPR repeat-containing 98.8 7.5E-06 1.6E-10 74.7 24.7 370 3-381 514-949 (1238)
125 PF12854 PPR_1: PPR repeat 98.8 9.4E-09 2E-13 53.4 3.9 32 350-381 2-33 (34)
126 TIGR02552 LcrH_SycD type III s 98.8 4.4E-07 9.4E-12 65.9 13.9 110 3-116 5-114 (135)
127 KOG0985 Vesicle coat protein c 98.8 6.6E-05 1.4E-09 69.0 29.5 338 3-382 969-1339(1666)
128 PRK15179 Vi polysaccharide bio 98.8 3.7E-06 8.1E-11 77.0 22.4 182 176-367 82-267 (694)
129 KOG3616 Selective LIM binding 98.8 1.7E-05 3.7E-10 70.3 24.4 54 327-383 857-910 (1636)
130 TIGR02552 LcrH_SycD type III s 98.7 6.4E-07 1.4E-11 65.0 13.8 94 253-348 20-113 (135)
131 KOG3616 Selective LIM binding 98.7 1.5E-05 3.1E-10 70.7 23.9 162 160-346 747-908 (1636)
132 KOG3060 Uncharacterized conser 98.7 4.9E-05 1.1E-09 58.5 23.1 188 101-315 26-221 (289)
133 PF12854 PPR_1: PPR repeat 98.7 3.1E-08 6.7E-13 51.4 3.9 32 175-206 2-33 (34)
134 KOG3060 Uncharacterized conser 98.7 6.6E-05 1.4E-09 57.8 23.2 187 159-349 26-220 (289)
135 KOG3617 WD40 and TPR repeat-co 98.6 1.3E-05 2.9E-10 71.7 20.9 84 284-382 911-994 (1416)
136 COG5107 RNA14 Pre-mRNA 3'-end 98.6 0.00023 4.9E-09 59.7 33.5 362 9-383 36-530 (660)
137 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 4.3E-06 9.3E-11 70.8 15.9 125 252-382 171-295 (395)
138 COG4783 Putative Zn-dependent 98.6 2.3E-05 4.9E-10 66.1 19.4 140 60-244 314-454 (484)
139 PF09976 TPR_21: Tetratricopep 98.5 1E-05 2.2E-10 59.3 15.2 126 252-381 14-144 (145)
140 PF09976 TPR_21: Tetratricopep 98.5 2.2E-05 4.9E-10 57.5 15.5 124 183-310 15-143 (145)
141 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 1.5E-05 3.2E-10 67.7 15.6 125 183-313 172-296 (395)
142 KOG1130 Predicted G-alpha GTPa 98.4 1.3E-05 2.9E-10 66.0 13.8 283 24-313 24-343 (639)
143 PF05843 Suf: Suppressor of fo 98.4 2.2E-05 4.9E-10 64.4 14.3 129 217-348 3-135 (280)
144 TIGR00756 PPR pentatricopeptid 98.3 9.4E-07 2E-11 46.7 3.9 33 357-389 2-34 (35)
145 TIGR00756 PPR pentatricopeptid 98.3 1.2E-06 2.6E-11 46.3 4.2 33 19-51 2-34 (35)
146 PF13812 PPR_3: Pentatricopept 98.3 1.2E-06 2.5E-11 46.0 4.0 33 18-50 2-34 (34)
147 PF13812 PPR_3: Pentatricopept 98.3 1.5E-06 3.3E-11 45.5 4.3 33 356-388 2-34 (34)
148 PF10037 MRP-S27: Mitochondria 98.3 1.8E-05 3.8E-10 67.5 12.3 124 245-368 61-186 (429)
149 PF10037 MRP-S27: Mitochondria 98.3 3.1E-05 6.7E-10 66.1 13.5 125 209-333 60-186 (429)
150 KOG0550 Molecular chaperone (D 98.2 0.00079 1.7E-08 55.9 20.2 262 22-314 54-350 (486)
151 PRK15363 pathogenicity island 98.2 4.6E-05 1E-09 54.9 11.8 95 253-349 38-132 (157)
152 TIGR02795 tol_pal_ybgF tol-pal 98.2 6.9E-05 1.5E-09 52.9 13.1 100 18-117 3-106 (119)
153 KOG2053 Mitochondrial inherita 98.2 0.004 8.8E-08 57.0 36.9 180 27-210 53-256 (932)
154 PRK10866 outer membrane biogen 98.2 0.0011 2.3E-08 53.2 20.8 183 180-382 32-239 (243)
155 PLN03088 SGT1, suppressor of 98.2 4.5E-05 9.8E-10 65.0 13.6 102 256-361 8-109 (356)
156 PRK02603 photosystem I assembl 98.2 8.4E-05 1.8E-09 56.3 13.8 86 16-102 34-121 (172)
157 TIGR02795 tol_pal_ybgF tol-pal 98.2 0.00014 3.1E-09 51.3 13.9 26 358-383 79-104 (119)
158 PF14938 SNAP: Soluble NSF att 98.2 0.0002 4.4E-09 59.0 16.6 204 54-277 37-264 (282)
159 cd00189 TPR Tetratricopeptide 98.2 5.3E-05 1.1E-09 50.9 11.3 93 20-114 3-95 (100)
160 cd00189 TPR Tetratricopeptide 98.2 6.3E-05 1.4E-09 50.5 11.6 90 291-382 6-95 (100)
161 PF12895 Apc3: Anaphase-promot 98.2 6.9E-06 1.5E-10 53.7 6.3 81 298-380 2-83 (84)
162 CHL00033 ycf3 photosystem I as 98.2 0.00017 3.7E-09 54.5 14.6 111 33-144 15-135 (168)
163 PRK15363 pathogenicity island 98.2 0.00013 2.8E-09 52.6 12.8 98 285-384 35-132 (157)
164 KOG1130 Predicted G-alpha GTPa 98.2 6.6E-05 1.4E-09 62.0 12.5 132 252-383 197-343 (639)
165 KOG0553 TPR repeat-containing 98.1 4.3E-05 9.4E-10 60.5 10.7 98 259-360 90-187 (304)
166 PLN03088 SGT1, suppressor of 98.1 0.00013 2.8E-09 62.2 14.5 93 221-315 8-100 (356)
167 PRK10866 outer membrane biogen 98.1 0.0027 5.9E-08 50.9 21.1 66 51-117 31-99 (243)
168 PRK02603 photosystem I assembl 98.1 0.00031 6.7E-09 53.2 15.1 114 51-174 34-149 (172)
169 PF08579 RPM2: Mitochondrial r 98.1 9.4E-05 2E-09 49.4 10.4 80 55-134 28-116 (120)
170 KOG0550 Molecular chaperone (D 98.1 0.0033 7.2E-08 52.4 21.2 259 4-280 72-351 (486)
171 PF12895 Apc3: Anaphase-promot 98.1 1.4E-05 2.9E-10 52.3 6.4 20 291-310 31-50 (84)
172 PRK10153 DNA-binding transcrip 98.1 0.00046 1E-08 61.6 17.7 134 247-383 334-481 (517)
173 PF14938 SNAP: Soluble NSF att 98.1 0.0016 3.6E-08 53.7 19.7 24 255-278 160-183 (282)
174 KOG2053 Mitochondrial inherita 98.1 0.0089 1.9E-07 54.9 38.0 213 27-245 19-256 (932)
175 PF08579 RPM2: Mitochondrial r 98.0 0.00011 2.3E-09 49.1 9.3 79 21-99 29-116 (120)
176 PF05843 Suf: Suppressor of fo 98.0 0.00036 7.7E-09 57.4 14.5 131 181-314 2-136 (280)
177 COG4235 Cytochrome c biogenesi 98.0 0.00074 1.6E-08 54.0 15.1 100 282-383 153-255 (287)
178 CHL00033 ycf3 photosystem I as 98.0 0.00028 6.1E-09 53.3 12.3 62 218-279 38-101 (168)
179 PF12688 TPR_5: Tetratrico pep 98.0 0.00083 1.8E-08 46.7 13.4 91 257-347 8-102 (120)
180 PF01535 PPR: PPR repeat; Int 98.0 1.3E-05 2.8E-10 40.8 3.5 29 19-47 2-30 (31)
181 PF01535 PPR: PPR repeat; Int 98.0 1.4E-05 3E-10 40.7 3.5 29 357-385 2-30 (31)
182 PF14559 TPR_19: Tetratricopep 97.9 6.5E-05 1.4E-09 46.8 6.9 63 331-396 2-64 (68)
183 PRK10153 DNA-binding transcrip 97.9 0.00093 2E-08 59.7 16.4 137 14-153 334-484 (517)
184 COG4235 Cytochrome c biogenesi 97.9 0.00071 1.5E-08 54.1 13.8 99 16-116 155-256 (287)
185 PF12688 TPR_5: Tetratrico pep 97.9 0.0013 2.8E-08 45.7 13.5 109 21-133 5-117 (120)
186 PF13525 YfiO: Outer membrane 97.9 0.0064 1.4E-07 47.4 19.0 173 182-375 7-198 (203)
187 KOG0553 TPR repeat-containing 97.9 0.00029 6.2E-09 56.0 10.8 92 61-154 90-181 (304)
188 KOG2796 Uncharacterized conser 97.9 0.0043 9.2E-08 48.5 16.6 132 217-349 179-315 (366)
189 PF13414 TPR_11: TPR repeat; P 97.8 0.00018 3.9E-09 44.9 7.8 63 320-383 3-66 (69)
190 PF13525 YfiO: Outer membrane 97.8 0.0023 5E-08 49.9 15.4 62 20-81 8-71 (203)
191 COG4700 Uncharacterized protei 97.8 0.0069 1.5E-07 44.8 18.2 156 187-346 63-219 (251)
192 PF13432 TPR_16: Tetratricopep 97.8 0.00016 3.5E-09 44.5 7.0 55 328-383 5-59 (65)
193 PF06239 ECSIT: Evolutionarily 97.8 0.0013 2.8E-08 50.0 12.3 104 247-369 44-152 (228)
194 PF14559 TPR_19: Tetratricopep 97.8 0.00017 3.7E-09 44.9 6.7 51 65-116 4-54 (68)
195 PF13432 TPR_16: Tetratricopep 97.7 0.00034 7.3E-09 43.0 7.7 57 292-349 4-60 (65)
196 PF13414 TPR_11: TPR repeat; P 97.7 0.00022 4.7E-09 44.5 7.0 62 52-114 3-65 (69)
197 PF03704 BTAD: Bacterial trans 97.7 0.0016 3.5E-08 47.8 12.6 72 322-394 64-140 (146)
198 PF03704 BTAD: Bacterial trans 97.7 0.0065 1.4E-07 44.6 14.9 71 182-253 64-139 (146)
199 PF06239 ECSIT: Evolutionarily 97.6 0.0013 2.9E-08 50.0 10.9 87 177-263 44-151 (228)
200 COG4700 Uncharacterized protei 97.6 0.013 2.9E-07 43.3 19.1 134 246-381 85-219 (251)
201 KOG2796 Uncharacterized conser 97.6 0.019 4.2E-07 45.1 21.0 130 184-314 181-315 (366)
202 PRK15331 chaperone protein Sic 97.6 0.012 2.6E-07 42.9 15.1 89 258-348 45-133 (165)
203 PF13281 DUF4071: Domain of un 97.6 0.032 6.9E-07 47.2 20.5 170 22-209 146-334 (374)
204 PRK10803 tol-pal system protei 97.5 0.0024 5.3E-08 51.6 11.8 90 63-152 154-247 (263)
205 PRK10803 tol-pal system protei 97.5 0.0042 9E-08 50.3 13.0 87 261-349 154-246 (263)
206 PF04840 Vps16_C: Vps16, C-ter 97.5 0.051 1.1E-06 45.5 28.4 63 19-95 2-64 (319)
207 KOG1538 Uncharacterized conser 97.4 0.018 3.9E-07 51.2 16.3 261 90-383 559-845 (1081)
208 PRK15331 chaperone protein Sic 97.4 0.012 2.5E-07 43.0 12.4 91 291-383 43-133 (165)
209 PF13371 TPR_9: Tetratricopept 97.3 0.002 4.2E-08 40.7 7.4 53 330-383 5-57 (73)
210 PF13424 TPR_12: Tetratricopep 97.3 0.0013 2.9E-08 42.1 6.5 63 321-383 6-74 (78)
211 PF13371 TPR_9: Tetratricopept 97.3 0.0021 4.6E-08 40.5 7.3 55 26-81 4-58 (73)
212 PF04840 Vps16_C: Vps16, C-ter 97.2 0.091 2E-06 44.0 32.0 103 220-342 182-284 (319)
213 KOG2041 WD40 repeat protein [G 97.2 0.15 3.2E-06 46.2 25.9 328 15-373 690-1075(1189)
214 PF12921 ATP13: Mitochondrial 97.2 0.015 3.2E-07 41.0 11.1 99 121-227 1-100 (126)
215 PF13281 DUF4071: Domain of un 97.2 0.11 2.5E-06 44.0 21.4 166 182-349 143-334 (374)
216 KOG2280 Vacuolar assembly/sort 97.2 0.19 4.1E-06 45.9 27.8 331 21-381 441-796 (829)
217 PF07079 DUF1347: Protein of u 97.1 0.14 3E-06 43.8 32.2 128 225-360 389-530 (549)
218 PF13424 TPR_12: Tetratricopep 97.1 0.0025 5.4E-08 40.8 6.1 69 122-208 5-74 (78)
219 KOG2041 WD40 repeat protein [G 97.1 0.23 4.9E-06 45.1 23.4 315 49-396 689-1063(1189)
220 PLN03098 LPA1 LOW PSII ACCUMUL 97.0 0.027 5.9E-07 48.4 13.2 65 15-81 73-141 (453)
221 PF12921 ATP13: Mitochondrial 97.0 0.014 3.1E-07 41.1 9.8 86 284-369 1-102 (126)
222 COG5107 RNA14 Pre-mRNA 3'-end 97.0 0.19 4E-06 43.1 31.6 335 37-382 29-493 (660)
223 PF07079 DUF1347: Protein of u 96.9 0.24 5.2E-06 42.5 34.4 121 266-394 396-529 (549)
224 COG3118 Thioredoxin domain-con 96.9 0.12 2.7E-06 41.6 14.7 130 24-156 141-270 (304)
225 KOG1538 Uncharacterized conser 96.9 0.25 5.4E-06 44.4 17.6 209 39-279 622-846 (1081)
226 PF10300 DUF3808: Protein of u 96.8 0.23 4.9E-06 44.4 17.8 162 218-382 191-374 (468)
227 KOG0543 FKBP-type peptidyl-pro 96.8 0.042 9.2E-07 46.1 12.1 92 187-279 215-320 (397)
228 PLN03098 LPA1 LOW PSII ACCUMUL 96.8 0.042 9E-07 47.3 12.1 64 249-314 74-141 (453)
229 PF13512 TPR_18: Tetratricopep 96.7 0.097 2.1E-06 37.4 11.8 82 18-99 11-94 (142)
230 COG3898 Uncharacterized membra 96.7 0.3 6.4E-06 41.1 31.4 292 20-349 85-392 (531)
231 KOG1585 Protein required for f 96.7 0.2 4.4E-06 39.2 14.9 207 52-273 31-250 (308)
232 KOG2610 Uncharacterized conser 96.7 0.08 1.7E-06 43.4 12.6 151 158-310 116-272 (491)
233 KOG0543 FKBP-type peptidyl-pro 96.7 0.07 1.5E-06 44.9 12.6 92 222-314 215-320 (397)
234 COG3898 Uncharacterized membra 96.6 0.33 7.2E-06 40.8 30.8 296 55-388 85-396 (531)
235 smart00299 CLH Clathrin heavy 96.6 0.16 3.4E-06 36.9 14.1 125 219-366 11-136 (140)
236 PF04053 Coatomer_WDAD: Coatom 96.6 0.14 3E-06 45.1 14.5 159 188-381 269-428 (443)
237 PF10300 DUF3808: Protein of u 96.5 0.56 1.2E-05 42.0 17.9 162 183-347 191-374 (468)
238 PF13170 DUF4003: Protein of u 96.4 0.43 9.3E-06 39.6 17.8 139 196-336 78-233 (297)
239 KOG4555 TPR repeat-containing 96.4 0.12 2.7E-06 35.9 10.4 91 259-350 52-145 (175)
240 PF04053 Coatomer_WDAD: Coatom 96.4 0.32 6.9E-06 42.9 15.7 157 25-240 269-427 (443)
241 KOG1920 IkappaB kinase complex 96.4 1.1 2.3E-05 43.6 20.9 81 223-313 947-1027(1265)
242 PF09205 DUF1955: Domain of un 96.4 0.2 4.2E-06 35.1 12.4 62 289-351 90-151 (161)
243 COG1729 Uncharacterized protei 96.3 0.11 2.4E-06 41.4 11.1 97 19-116 144-244 (262)
244 COG1729 Uncharacterized protei 96.3 0.14 3.1E-06 40.8 11.6 97 182-279 144-244 (262)
245 KOG1941 Acetylcholine receptor 96.2 0.59 1.3E-05 39.0 15.5 201 182-382 45-273 (518)
246 KOG1550 Extracellular protein 96.2 0.97 2.1E-05 41.6 18.3 180 196-387 228-429 (552)
247 COG3118 Thioredoxin domain-con 96.2 0.54 1.2E-05 38.1 17.2 143 224-370 143-287 (304)
248 PF08631 SPO22: Meiosis protei 96.2 0.6 1.3E-05 38.6 26.7 169 98-284 4-191 (278)
249 KOG2114 Vacuolar assembly/sort 96.2 0.37 7.9E-06 44.7 14.8 46 261-307 408-453 (933)
250 COG4105 ComL DNA uptake lipopr 96.2 0.49 1.1E-05 37.5 20.5 181 182-382 36-231 (254)
251 KOG4555 TPR repeat-containing 96.1 0.17 3.6E-06 35.3 9.9 91 26-117 52-145 (175)
252 smart00299 CLH Clathrin heavy 96.1 0.33 7.2E-06 35.2 15.7 88 18-113 8-95 (140)
253 PRK11906 transcriptional regul 96.1 0.83 1.8E-05 39.8 17.1 145 231-380 274-432 (458)
254 PRK11906 transcriptional regul 96.1 0.63 1.4E-05 40.5 15.3 132 18-151 252-401 (458)
255 PF13431 TPR_17: Tetratricopep 96.0 0.0076 1.6E-07 31.1 2.5 32 4-37 2-33 (34)
256 PF13512 TPR_18: Tetratricopep 96.0 0.35 7.6E-06 34.7 12.4 78 183-260 13-92 (142)
257 PF04184 ST7: ST7 protein; In 96.0 1 2.2E-05 39.6 17.1 62 287-348 261-323 (539)
258 COG4105 ComL DNA uptake lipopr 96.0 0.61 1.3E-05 37.0 21.5 56 61-116 43-100 (254)
259 PF13428 TPR_14: Tetratricopep 96.0 0.039 8.4E-07 30.5 5.4 27 90-116 4-30 (44)
260 COG0457 NrfG FOG: TPR repeat [ 95.9 0.65 1.4E-05 37.0 26.7 202 180-384 59-265 (291)
261 KOG1258 mRNA processing protei 95.9 1.2 2.6E-05 39.9 34.1 88 27-115 89-179 (577)
262 PF09205 DUF1955: Domain of un 95.9 0.36 7.9E-06 33.8 15.0 65 181-246 87-151 (161)
263 KOG1941 Acetylcholine receptor 95.9 0.87 1.9E-05 38.1 15.1 128 185-312 127-273 (518)
264 PF13428 TPR_14: Tetratricopep 95.9 0.04 8.8E-07 30.4 5.2 25 289-313 5-29 (44)
265 PF08631 SPO22: Meiosis protei 95.9 0.84 1.8E-05 37.7 25.7 106 123-250 85-192 (278)
266 COG4785 NlpI Lipoprotein NlpI, 95.8 0.66 1.4E-05 35.8 13.9 63 52-115 99-161 (297)
267 KOG3941 Intermediate in Toll s 95.6 0.18 3.9E-06 40.3 9.5 89 178-266 65-174 (406)
268 COG3629 DnrI DNA-binding trans 95.5 0.2 4.4E-06 40.6 9.8 79 285-364 153-236 (280)
269 PF13170 DUF4003: Protein of u 95.5 1.2 2.6E-05 37.0 21.0 138 161-300 78-232 (297)
270 PF13176 TPR_7: Tetratricopept 95.5 0.034 7.4E-07 29.1 3.8 25 358-382 2-26 (36)
271 COG4649 Uncharacterized protei 95.3 0.79 1.7E-05 33.9 13.8 138 86-244 58-196 (221)
272 KOG3941 Intermediate in Toll s 95.2 0.28 6.1E-06 39.3 9.3 104 248-370 65-173 (406)
273 COG3629 DnrI DNA-binding trans 95.2 0.37 8E-06 39.2 10.1 78 251-329 154-236 (280)
274 COG4785 NlpI Lipoprotein NlpI, 95.0 1.2 2.7E-05 34.3 16.4 55 154-209 74-128 (297)
275 PF10602 RPN7: 26S proteasome 95.0 0.48 1E-05 35.9 10.0 97 18-114 37-140 (177)
276 PF00515 TPR_1: Tetratricopept 94.8 0.11 2.3E-06 26.6 4.4 28 356-383 2-29 (34)
277 KOG2610 Uncharacterized conser 94.8 2 4.4E-05 35.6 18.5 114 228-344 116-233 (491)
278 COG2909 MalT ATP-dependent tra 94.8 3.8 8.3E-05 38.8 21.9 198 191-388 426-651 (894)
279 KOG1585 Protein required for f 94.8 1.6 3.5E-05 34.4 16.3 208 18-239 32-251 (308)
280 PF10602 RPN7: 26S proteasome 94.8 0.82 1.8E-05 34.7 10.7 61 287-347 38-100 (177)
281 PF13176 TPR_7: Tetratricopept 94.7 0.09 1.9E-06 27.5 4.0 25 183-207 2-26 (36)
282 PF07719 TPR_2: Tetratricopept 94.4 0.14 3.1E-06 26.0 4.4 27 357-383 3-29 (34)
283 KOG2280 Vacuolar assembly/sort 94.4 4.2 9.2E-05 37.7 26.1 323 28-382 400-771 (829)
284 cd00923 Cyt_c_Oxidase_Va Cytoc 94.3 0.64 1.4E-05 30.5 7.7 46 303-348 25-70 (103)
285 PF07035 Mic1: Colon cancer-as 94.3 1.6 3.5E-05 32.5 15.9 28 205-232 19-46 (167)
286 COG4649 Uncharacterized protei 94.2 1.7 3.7E-05 32.3 15.4 135 16-151 58-196 (221)
287 cd00923 Cyt_c_Oxidase_Va Cytoc 94.1 0.58 1.3E-05 30.7 7.1 63 335-398 22-84 (103)
288 PF09613 HrpB1_HrpK: Bacterial 94.0 1.8 3.9E-05 31.8 12.4 19 295-313 54-72 (160)
289 KOG4570 Uncharacterized conser 93.9 2.4 5.3E-05 34.8 11.8 103 210-314 59-164 (418)
290 PF02284 COX5A: Cytochrome c o 93.8 0.55 1.2E-05 31.1 6.8 46 304-349 29-74 (108)
291 PF13431 TPR_17: Tetratricopep 93.8 0.091 2E-06 27.0 2.7 19 285-303 13-31 (34)
292 PF07035 Mic1: Colon cancer-as 93.6 2.3 5E-05 31.7 15.6 136 164-313 13-148 (167)
293 PF00637 Clathrin: Region in C 93.6 0.011 2.5E-07 43.1 -1.3 85 22-113 12-96 (143)
294 PF02284 COX5A: Cytochrome c o 93.4 1.6 3.4E-05 29.1 8.9 60 338-398 28-87 (108)
295 KOG4570 Uncharacterized conser 93.2 1.1 2.3E-05 36.8 8.9 103 245-349 59-164 (418)
296 PF11207 DUF2989: Protein of u 93.1 1.5 3.3E-05 33.5 9.2 72 197-269 123-197 (203)
297 TIGR03504 FimV_Cterm FimV C-te 93.1 0.38 8.3E-06 26.4 4.5 25 361-385 5-29 (44)
298 PF09613 HrpB1_HrpK: Bacterial 93.1 2.6 5.7E-05 31.0 12.5 107 24-137 17-124 (160)
299 KOG2114 Vacuolar assembly/sort 93.0 8.4 0.00018 36.5 21.4 85 21-112 372-456 (933)
300 PF04184 ST7: ST7 protein; In 92.9 6.4 0.00014 34.9 17.3 76 182-257 261-338 (539)
301 COG0457 NrfG FOG: TPR repeat [ 92.6 4.2 9.1E-05 32.1 29.7 88 260-349 177-265 (291)
302 KOG1464 COP9 signalosome, subu 92.5 4.8 0.0001 32.4 18.4 159 182-341 67-252 (440)
303 KOG1920 IkappaB kinase complex 92.4 13 0.00027 36.9 23.0 81 256-348 945-1027(1265)
304 KOG4234 TPR repeat-containing 92.3 3 6.4E-05 31.9 9.5 92 62-154 105-200 (271)
305 PF06552 TOM20_plant: Plant sp 92.1 4 8.6E-05 30.7 10.3 117 103-245 7-137 (186)
306 KOG1258 mRNA processing protei 92.0 9.3 0.0002 34.6 33.6 357 2-369 100-489 (577)
307 PF13181 TPR_8: Tetratricopept 91.9 0.48 1E-05 24.1 3.9 27 357-383 3-29 (34)
308 PF13374 TPR_10: Tetratricopep 91.9 0.57 1.2E-05 25.1 4.5 29 355-383 2-30 (42)
309 PF11207 DUF2989: Protein of u 91.8 3.7 8E-05 31.5 9.8 74 68-142 122-198 (203)
310 PF00515 TPR_1: Tetratricopept 91.8 0.55 1.2E-05 23.9 4.1 24 289-312 5-28 (34)
311 COG3947 Response regulator con 91.7 6.4 0.00014 32.2 15.6 71 322-393 281-356 (361)
312 PF08424 NRDE-2: NRDE-2, neces 91.6 7.8 0.00017 32.9 18.5 145 4-152 8-184 (321)
313 PF00637 Clathrin: Region in C 91.5 0.14 3.1E-06 37.3 2.2 126 57-195 12-140 (143)
314 PRK13184 pknD serine/threonine 90.9 18 0.00038 35.7 23.8 95 19-116 477-581 (932)
315 PF07719 TPR_2: Tetratricopept 90.8 0.97 2.1E-05 22.8 4.4 22 93-114 7-28 (34)
316 TIGR02561 HrpB1_HrpK type III 90.7 5 0.00011 29.1 11.0 53 28-82 21-74 (153)
317 KOG2471 TPR repeat-containing 90.6 12 0.00026 33.2 15.8 109 259-368 249-382 (696)
318 PF02259 FAT: FAT domain; Int 90.5 11 0.00023 32.5 25.8 53 24-80 5-57 (352)
319 PRK11619 lytic murein transgly 90.5 16 0.00034 34.5 29.7 105 91-206 103-207 (644)
320 KOG0276 Vesicle coat complex C 90.4 5.6 0.00012 36.0 10.9 131 183-346 617-747 (794)
321 PF06552 TOM20_plant: Plant sp 90.4 6.3 0.00014 29.7 11.8 27 337-365 97-123 (186)
322 COG4455 ImpE Protein of avirul 90.2 2.6 5.7E-05 32.7 7.6 75 20-95 4-80 (273)
323 COG2976 Uncharacterized protei 90.0 7.1 0.00015 29.8 15.0 90 293-384 97-188 (207)
324 PF13374 TPR_10: Tetratricopep 90.0 0.96 2.1E-05 24.2 4.2 25 323-347 5-29 (42)
325 COG2909 MalT ATP-dependent tra 89.9 19 0.00041 34.6 26.2 51 158-208 471-525 (894)
326 COG4455 ImpE Protein of avirul 89.2 3.5 7.6E-05 32.0 7.7 76 288-364 4-81 (273)
327 KOG4234 TPR repeat-containing 89.1 8.7 0.00019 29.5 11.7 89 26-116 104-197 (271)
328 COG2976 Uncharacterized protei 89.1 8.6 0.00019 29.4 13.7 55 293-349 134-188 (207)
329 PF13929 mRNA_stabil: mRNA sta 88.6 12 0.00027 30.7 16.6 137 194-330 142-288 (292)
330 KOG0276 Vesicle coat complex C 88.6 10 0.00022 34.5 11.1 100 190-310 647-746 (794)
331 PF14853 Fis1_TPR_C: Fis1 C-te 88.6 2.4 5.2E-05 24.5 5.1 22 362-383 8-29 (53)
332 PF13181 TPR_8: Tetratricopept 88.4 1.7 3.8E-05 21.9 4.3 26 288-313 4-29 (34)
333 KOG4077 Cytochrome c oxidase, 88.2 6 0.00013 27.6 7.5 44 306-349 70-113 (149)
334 PF13174 TPR_6: Tetratricopept 88.2 1.2 2.7E-05 22.1 3.6 23 361-383 6-28 (33)
335 KOG1550 Extracellular protein 88.1 22 0.00048 33.0 27.2 84 33-123 228-328 (552)
336 TIGR03504 FimV_Cterm FimV C-te 88.0 1.5 3.3E-05 24.1 3.9 23 326-348 5-27 (44)
337 PF07721 TPR_4: Tetratricopept 87.8 0.88 1.9E-05 21.5 2.6 21 359-379 5-25 (26)
338 PRK15180 Vi polysaccharide bio 87.4 20 0.00044 31.7 15.1 126 188-316 297-422 (831)
339 KOG4077 Cytochrome c oxidase, 87.3 6.5 0.00014 27.5 7.3 60 338-398 67-126 (149)
340 KOG4648 Uncharacterized conser 87.2 4.8 0.0001 33.6 7.9 94 24-121 104-197 (536)
341 KOG4648 Uncharacterized conser 87.1 5.2 0.00011 33.5 8.0 58 256-314 103-160 (536)
342 TIGR02561 HrpB1_HrpK type III 87.0 9.7 0.00021 27.7 12.2 64 251-315 8-74 (153)
343 PF13174 TPR_6: Tetratricopept 86.8 1.6 3.5E-05 21.7 3.5 21 95-115 8-28 (33)
344 KOG2063 Vacuolar assembly/sort 86.8 33 0.00071 33.5 16.1 129 124-263 506-639 (877)
345 PF07163 Pex26: Pex26 protein; 86.5 15 0.00033 29.9 10.0 90 184-273 87-181 (309)
346 KOG1586 Protein required for f 86.2 15 0.00033 29.1 17.3 23 295-317 164-186 (288)
347 COG1747 Uncharacterized N-term 85.7 26 0.00057 31.4 25.1 166 177-349 63-234 (711)
348 PF02259 FAT: FAT domain; Int 85.7 22 0.00048 30.6 26.3 54 58-115 4-57 (352)
349 PF07163 Pex26: Pex26 protein; 85.6 18 0.0004 29.5 11.9 126 20-145 38-181 (309)
350 KOG2066 Vacuolar assembly/sort 85.0 36 0.00077 32.3 25.8 167 24-208 363-533 (846)
351 PF07575 Nucleopor_Nup85: Nup8 85.0 33 0.00073 32.0 16.1 27 17-44 149-175 (566)
352 PRK09687 putative lyase; Provi 84.9 21 0.00046 29.6 28.0 200 179-399 67-276 (280)
353 COG1747 Uncharacterized N-term 84.6 30 0.00065 31.1 22.3 166 212-384 63-234 (711)
354 PF09986 DUF2225: Uncharacteri 84.3 19 0.0004 28.5 10.9 66 104-169 142-212 (214)
355 COG3947 Response regulator con 84.3 22 0.00048 29.3 16.2 57 219-276 283-339 (361)
356 KOG2396 HAT (Half-A-TPR) repea 83.7 32 0.00069 30.8 27.3 212 161-383 337-558 (568)
357 KOG0890 Protein kinase of the 83.7 73 0.0016 34.9 26.2 117 22-145 1388-1506(2382)
358 PF10345 Cohesin_load: Cohesin 83.3 41 0.0009 31.8 31.8 198 50-276 28-251 (608)
359 PF08424 NRDE-2: NRDE-2, neces 82.3 30 0.00065 29.4 17.7 60 233-294 49-108 (321)
360 KOG1586 Protein required for f 81.5 25 0.00054 28.0 22.0 61 185-245 118-184 (288)
361 KOG0128 RNA-binding protein SA 80.7 55 0.0012 31.4 30.8 189 16-208 112-340 (881)
362 PF10579 Rapsyn_N: Rapsyn N-te 80.5 9.3 0.0002 24.2 5.4 46 332-377 18-65 (80)
363 KOG4507 Uncharacterized conser 80.4 15 0.00033 33.4 8.5 96 20-116 215-312 (886)
364 smart00028 TPR Tetratricopepti 80.1 4.3 9.3E-05 19.3 3.6 25 358-382 4-28 (34)
365 PF10579 Rapsyn_N: Rapsyn N-te 79.9 11 0.00023 23.9 5.5 46 297-342 18-65 (80)
366 PHA02537 M terminase endonucle 79.4 30 0.00065 27.6 10.3 43 6-49 73-115 (230)
367 PF11848 DUF3368: Domain of un 79.3 8 0.00017 21.8 4.5 31 332-362 14-44 (48)
368 PF10345 Cohesin_load: Cohesin 79.3 58 0.0013 30.8 32.4 191 191-382 372-604 (608)
369 KOG4642 Chaperone-dependent E3 78.7 32 0.00069 27.5 12.8 129 144-276 9-143 (284)
370 KOG3364 Membrane protein invol 78.6 22 0.00047 25.5 10.1 48 336-383 51-99 (149)
371 KOG1464 COP9 signalosome, subu 78.6 34 0.00075 27.8 18.3 200 176-376 22-252 (440)
372 KOG0890 Protein kinase of the 77.6 1.2E+02 0.0026 33.5 21.2 285 92-385 1388-1732(2382)
373 COG0790 FOG: TPR repeat, SEL1 77.5 41 0.00088 28.1 23.7 23 370-392 252-274 (292)
374 PF11846 DUF3366: Domain of un 77.5 17 0.00036 28.1 7.5 32 317-348 141-172 (193)
375 PF13762 MNE1: Mitochondrial s 77.2 25 0.00055 25.6 9.4 81 288-368 42-128 (145)
376 KOG4642 Chaperone-dependent E3 77.1 36 0.00078 27.2 11.0 85 224-312 19-105 (284)
377 cd08819 CARD_MDA5_2 Caspase ac 76.9 18 0.00038 23.6 6.2 66 36-107 21-86 (88)
378 KOG4507 Uncharacterized conser 76.8 18 0.0004 32.9 8.0 86 228-314 620-705 (886)
379 KOG2471 TPR repeat-containing 76.3 58 0.0013 29.2 15.0 304 25-334 25-383 (696)
380 PF08311 Mad3_BUB1_I: Mad3/BUB 76.3 25 0.00054 25.0 8.7 43 338-380 81-124 (126)
381 PF14689 SPOB_a: Sensor_kinase 75.0 12 0.00025 22.5 4.7 24 325-348 28-51 (62)
382 PRK10564 maltose regulon perip 74.8 11 0.00023 31.2 5.8 38 358-395 260-297 (303)
383 PF14689 SPOB_a: Sensor_kinase 74.7 14 0.0003 22.2 5.0 47 335-383 5-51 (62)
384 PF13929 mRNA_stabil: mRNA sta 74.5 48 0.001 27.4 22.9 134 231-364 144-287 (292)
385 PHA02875 ankyrin repeat protei 74.4 62 0.0013 28.7 11.7 15 224-238 74-88 (413)
386 PRK10564 maltose regulon perip 74.2 6.6 0.00014 32.3 4.5 30 20-49 260-289 (303)
387 COG0735 Fur Fe2+/Zn2+ uptake r 73.3 24 0.00051 25.8 6.8 47 275-322 11-57 (145)
388 PF12862 Apc5: Anaphase-promot 72.9 24 0.00053 23.3 7.0 21 128-148 47-67 (94)
389 KOG1308 Hsp70-interacting prot 72.4 3.7 8E-05 34.3 2.7 96 27-124 124-219 (377)
390 PF09670 Cas_Cas02710: CRISPR- 71.9 69 0.0015 28.1 11.4 57 24-81 138-198 (379)
391 PF13762 MNE1: Mitochondrial s 71.8 36 0.00078 24.8 11.6 95 43-137 28-130 (145)
392 TIGR02508 type_III_yscG type I 71.7 28 0.0006 23.4 8.7 88 31-126 19-106 (115)
393 PF14561 TPR_20: Tetratricopep 71.5 26 0.00056 23.0 7.4 52 51-102 21-73 (90)
394 PF14561 TPR_20: Tetratricopep 71.3 26 0.00057 23.0 10.1 55 119-173 19-73 (90)
395 TIGR02508 type_III_yscG type I 71.0 29 0.00062 23.3 8.5 49 330-384 49-97 (115)
396 PRK09857 putative transposase; 71.0 62 0.0013 27.1 9.7 57 332-389 218-274 (292)
397 PF11848 DUF3368: Domain of un 70.8 16 0.00036 20.5 4.8 35 26-60 11-45 (48)
398 PF11846 DUF3366: Domain of un 70.5 28 0.0006 26.9 7.2 32 282-313 141-172 (193)
399 KOG4279 Serine/threonine prote 70.3 1E+02 0.0022 29.5 12.6 193 3-215 185-400 (1226)
400 KOG1308 Hsp70-interacting prot 70.1 9.9 0.00021 31.9 4.6 93 225-319 124-216 (377)
401 PF11663 Toxin_YhaV: Toxin wit 70.1 5.9 0.00013 28.1 2.9 31 158-190 108-138 (140)
402 PF10475 DUF2450: Protein of u 69.6 52 0.0011 27.6 9.0 51 92-148 103-153 (291)
403 cd00280 TRFH Telomeric Repeat 69.4 48 0.001 25.3 7.6 64 161-227 85-155 (200)
404 PRK09687 putative lyase; Provi 68.9 67 0.0015 26.7 30.1 136 214-365 141-277 (280)
405 KOG0376 Serine-threonine phosp 68.2 13 0.00028 32.9 5.1 108 256-368 10-118 (476)
406 KOG1839 Uncharacterized protei 68.0 1.3E+02 0.0028 30.8 12.1 164 24-204 939-1123(1236)
407 PF12862 Apc5: Anaphase-promot 67.8 33 0.00071 22.7 7.1 19 364-382 50-68 (94)
408 PRK13342 recombination factor 67.7 91 0.002 27.8 19.7 118 103-227 153-277 (413)
409 KOG2396 HAT (Half-A-TPR) repea 67.7 96 0.0021 28.0 34.4 215 165-394 302-534 (568)
410 KOG1839 Uncharacterized protei 67.0 90 0.002 31.8 10.8 160 97-272 942-1121(1236)
411 KOG0376 Serine-threonine phosp 66.3 27 0.00058 31.0 6.6 106 221-331 10-116 (476)
412 KOG2066 Vacuolar assembly/sort 66.2 1.3E+02 0.0028 29.0 22.7 72 60-137 364-438 (846)
413 PF11817 Foie-gras_1: Foie gra 66.0 50 0.0011 26.9 8.0 59 324-382 182-245 (247)
414 KOG0687 26S proteasome regulat 65.4 84 0.0018 26.6 13.2 100 88-208 105-209 (393)
415 PF07575 Nucleopor_Nup85: Nup8 65.0 27 0.00058 32.6 7.1 33 192-224 507-539 (566)
416 COG5159 RPN6 26S proteasome re 65.0 79 0.0017 26.2 15.9 198 186-383 9-234 (421)
417 COG5108 RPO41 Mitochondrial DN 64.9 42 0.00092 31.3 7.7 92 289-383 32-131 (1117)
418 cd00280 TRFH Telomeric Repeat 64.6 62 0.0013 24.7 7.8 22 257-278 118-139 (200)
419 KOG4521 Nuclear pore complex, 64.0 1.7E+02 0.0038 29.7 15.3 176 128-312 926-1130(1480)
420 COG5108 RPO41 Mitochondrial DN 63.2 69 0.0015 30.0 8.7 74 22-98 33-114 (1117)
421 PRK10941 hypothetical protein; 62.7 87 0.0019 25.9 9.7 63 90-153 184-246 (269)
422 COG0735 Fur Fe2+/Zn2+ uptake r 62.7 58 0.0013 23.8 7.4 44 93-136 26-69 (145)
423 PRK11619 lytic murein transgly 62.5 1.5E+02 0.0032 28.4 35.0 180 193-378 254-462 (644)
424 PF02184 HAT: HAT (Half-A-TPR) 62.0 14 0.0003 18.7 2.6 24 370-395 2-25 (32)
425 PF09454 Vps23_core: Vps23 cor 61.9 34 0.00074 20.9 4.7 49 85-134 6-54 (65)
426 PF11663 Toxin_YhaV: Toxin wit 61.3 11 0.00025 26.7 3.0 21 229-249 109-129 (140)
427 smart00386 HAT HAT (Half-A-TPR 61.0 18 0.00039 17.4 4.1 15 335-349 2-16 (33)
428 PF00244 14-3-3: 14-3-3 protei 60.7 88 0.0019 25.2 12.8 59 185-243 6-65 (236)
429 PF11817 Foie-gras_1: Foie gra 60.6 65 0.0014 26.2 7.8 59 90-148 181-244 (247)
430 PRK14700 recombination factor 60.2 1E+02 0.0022 25.8 18.8 64 184-247 127-198 (300)
431 PF14853 Fis1_TPR_C: Fis1 C-te 59.4 33 0.00071 19.9 5.7 22 95-116 9-30 (53)
432 PF09670 Cas_Cas02710: CRISPR- 58.9 1.3E+02 0.0028 26.5 11.5 53 95-148 139-195 (379)
433 KOG2422 Uncharacterized conser 58.6 1.5E+02 0.0034 27.4 17.3 52 295-346 352-404 (665)
434 PF00244 14-3-3: 14-3-3 protei 57.7 1E+02 0.0022 24.9 12.4 32 159-190 15-46 (236)
435 PF10366 Vps39_1: Vacuolar sor 57.3 39 0.00084 23.2 5.1 26 253-278 42-67 (108)
436 KOG4521 Nuclear pore complex, 56.9 2.3E+02 0.0051 28.9 15.0 167 26-205 929-1127(1480)
437 PRK15180 Vi polysaccharide bio 55.3 1.6E+02 0.0035 26.6 26.1 91 25-117 331-421 (831)
438 COG0790 FOG: TPR repeat, SEL1 55.2 1.2E+02 0.0027 25.2 24.7 184 158-354 54-271 (292)
439 KOG2063 Vacuolar assembly/sort 55.0 2.3E+02 0.0049 28.2 20.9 115 20-134 507-638 (877)
440 COG4259 Uncharacterized protei 54.5 63 0.0014 21.7 6.4 24 324-347 76-99 (121)
441 PF04910 Tcf25: Transcriptiona 54.3 1.5E+02 0.0032 25.9 21.1 65 179-243 99-167 (360)
442 cd08819 CARD_MDA5_2 Caspase ac 54.2 59 0.0013 21.2 6.6 64 305-374 22-85 (88)
443 PF05944 Phage_term_smal: Phag 53.8 80 0.0017 22.7 7.0 22 61-82 57-78 (132)
444 COG5187 RPN7 26S proteasome re 53.7 1.3E+02 0.0028 25.0 12.1 159 34-194 55-241 (412)
445 PRK10941 hypothetical protein; 53.4 1.3E+02 0.0028 24.9 10.5 56 257-313 188-243 (269)
446 PHA02875 ankyrin repeat protei 53.0 1.7E+02 0.0036 26.0 15.8 16 188-203 73-88 (413)
447 KOG2297 Predicted translation 52.1 1.4E+02 0.0031 25.0 16.5 227 43-313 157-399 (412)
448 PF09477 Type_III_YscG: Bacter 51.7 76 0.0016 21.8 10.1 88 30-125 19-106 (116)
449 PF12926 MOZART2: Mitotic-spin 51.6 65 0.0014 21.0 7.8 42 73-114 29-70 (88)
450 PF09454 Vps23_core: Vps23 cor 50.9 47 0.001 20.3 4.1 48 16-64 7-54 (65)
451 cd07153 Fur_like Ferric uptake 50.7 58 0.0012 22.5 5.3 46 23-68 6-51 (116)
452 PF09477 Type_III_YscG: Bacter 50.3 81 0.0017 21.6 10.4 39 265-304 21-59 (116)
453 PF09986 DUF2225: Uncharacteri 50.0 1.3E+02 0.0028 23.9 12.7 96 99-210 89-195 (214)
454 PF10255 Paf67: RNA polymerase 50.0 1.9E+02 0.004 25.7 12.0 61 217-277 124-191 (404)
455 PF04097 Nic96: Nup93/Nic96; 50.0 2.4E+02 0.0051 26.9 24.6 18 365-382 515-532 (613)
456 smart00777 Mad3_BUB1_I Mad3/BU 49.9 91 0.002 22.1 9.2 43 337-379 80-123 (125)
457 KOG0292 Vesicle coat complex C 49.4 1.2E+02 0.0026 29.8 8.1 95 100-208 606-700 (1202)
458 PF10475 DUF2450: Protein of u 49.1 1.6E+02 0.0035 24.7 10.5 118 221-349 104-226 (291)
459 KOG0991 Replication factor C, 48.9 1.4E+02 0.0031 24.1 12.1 36 247-283 236-271 (333)
460 KOG4567 GTPase-activating prot 48.3 1.7E+02 0.0036 24.7 9.5 72 72-148 263-344 (370)
461 KOG0686 COP9 signalosome, subu 47.9 2E+02 0.0043 25.4 15.2 174 181-363 151-352 (466)
462 KOG4567 GTPase-activating prot 47.9 1.7E+02 0.0037 24.7 9.3 42 236-277 264-305 (370)
463 cd07153 Fur_like Ferric uptake 47.2 57 0.0012 22.5 4.8 45 93-137 6-50 (116)
464 PF08311 Mad3_BUB1_I: Mad3/BUB 46.8 1E+02 0.0022 21.9 10.8 43 268-310 81-124 (126)
465 KOG0551 Hsp90 co-chaperone CNS 46.6 1.9E+02 0.0041 24.8 8.5 96 54-150 83-181 (390)
466 KOG2034 Vacuolar sorting prote 46.4 3E+02 0.0066 27.1 26.8 49 25-79 366-416 (911)
467 PF06957 COPI_C: Coatomer (COP 46.2 1.6E+02 0.0035 26.2 8.1 19 260-278 214-232 (422)
468 PF01475 FUR: Ferric uptake re 45.9 57 0.0012 22.8 4.7 45 22-66 12-56 (120)
469 PF06855 DUF1250: Protein of u 45.8 53 0.0012 18.3 3.8 40 5-44 3-42 (46)
470 COG4976 Predicted methyltransf 45.6 59 0.0013 26.0 4.8 55 294-349 4-58 (287)
471 PF09868 DUF2095: Uncharacteri 45.5 1E+02 0.0022 21.3 5.3 21 62-82 71-91 (128)
472 PF07678 A2M_comp: A-macroglob 45.5 1.7E+02 0.0036 23.8 8.6 160 234-396 33-238 (246)
473 PF01475 FUR: Ferric uptake re 45.4 51 0.0011 23.0 4.4 46 92-137 12-57 (120)
474 PF10255 Paf67: RNA polymerase 45.3 2.2E+02 0.0048 25.3 9.3 63 181-243 123-192 (404)
475 PF15297 CKAP2_C: Cytoskeleton 44.9 2E+02 0.0044 24.7 9.7 65 68-134 119-187 (353)
476 PRK07003 DNA polymerase III su 44.4 3.2E+02 0.007 26.9 11.8 84 266-352 180-277 (830)
477 KOG2581 26S proteasome regulat 44.4 2.3E+02 0.0049 25.1 13.6 132 179-314 123-276 (493)
478 PRK13341 recombination factor 43.8 3.2E+02 0.007 26.7 20.0 144 104-250 171-333 (725)
479 PF12926 MOZART2: Mitotic-spin 43.3 92 0.002 20.3 8.0 42 341-382 29-70 (88)
480 PRK11639 zinc uptake transcrip 42.9 1.3E+02 0.0027 22.8 6.3 61 43-104 17-77 (169)
481 PF04910 Tcf25: Transcriptiona 42.9 2.3E+02 0.005 24.8 21.4 30 178-207 38-67 (360)
482 PRK09462 fur ferric uptake reg 42.4 1.3E+02 0.0029 21.9 7.1 45 93-137 22-67 (148)
483 KOG1114 Tripeptidyl peptidase 40.4 4E+02 0.0086 26.8 14.7 51 214-264 1230-1281(1304)
484 PF10366 Vps39_1: Vacuolar sor 40.0 1.2E+02 0.0027 20.8 7.7 26 55-80 42-67 (108)
485 PRK11639 zinc uptake transcrip 39.7 1.7E+02 0.0036 22.2 8.2 60 78-138 17-76 (169)
486 KOG1524 WD40 repeat-containing 38.9 2E+02 0.0044 26.3 7.5 60 14-79 570-629 (737)
487 PRK09462 fur ferric uptake reg 38.8 1.6E+02 0.0034 21.6 8.0 58 43-101 8-66 (148)
488 KOG3364 Membrane protein invol 38.6 1.5E+02 0.0033 21.5 10.6 71 119-209 29-100 (149)
489 PRK13342 recombination factor 38.2 2.9E+02 0.0064 24.6 19.8 56 298-353 243-303 (413)
490 PRK09857 putative transposase; 38.2 2.4E+02 0.0053 23.7 9.7 65 289-354 210-274 (292)
491 PF08542 Rep_fac_C: Replicatio 38.1 1.1E+02 0.0024 19.8 4.8 50 318-369 3-52 (89)
492 PRK08691 DNA polymerase III su 38.0 3.9E+02 0.0084 26.0 12.3 84 266-352 180-277 (709)
493 PF02847 MA3: MA3 domain; Int 37.7 1.3E+02 0.0029 20.5 8.4 22 255-276 7-28 (113)
494 COG5191 Uncharacterized conser 37.7 72 0.0016 26.8 4.5 65 16-81 106-171 (435)
495 PRK12798 chemotaxis protein; R 37.6 3E+02 0.0064 24.5 21.1 82 193-276 125-211 (421)
496 PF04090 RNA_pol_I_TF: RNA pol 37.2 2E+02 0.0044 22.5 7.3 30 251-280 42-71 (199)
497 PF12968 DUF3856: Domain of Un 37.0 1.5E+02 0.0033 20.9 8.8 68 122-206 55-126 (144)
498 COG4003 Uncharacterized protei 37.0 1.1E+02 0.0025 19.5 4.9 24 24-47 38-61 (98)
499 KOG2581 26S proteasome regulat 36.9 3E+02 0.0065 24.4 14.9 147 16-166 123-291 (493)
500 PF05944 Phage_term_smal: Phag 36.6 1.6E+02 0.0035 21.2 8.1 20 331-350 59-78 (132)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.1e-63 Score=460.40 Aligned_cols=395 Identities=21% Similarity=0.321 Sum_probs=375.7
Q ss_pred chhHHHHhcCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 040367 2 CIFDYMLNMRPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRS 81 (400)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 81 (400)
++|++|...+..+++...++.++..|.+.|.+++|+.+|+.|.. ||..+|+.++.+|++.|+++.|.++++.|.+.
T Consensus 391 ~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~ 466 (1060)
T PLN03218 391 DLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEA 466 (1060)
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc
Confidence 68899999888767888888899999999999999999988874 89999999999999999999999999999999
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCc----
Q 040367 82 CFTPNAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGV---- 157 (400)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---- 157 (400)
|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|+.|...+..++.
T Consensus 467 Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYn 546 (1060)
T PLN03218 467 GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFN 546 (1060)
T ss_pred CCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999888766554
Q ss_pred --------ccchHHHHHHHHHHHh--CCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 040367 158 --------EGFVDKAKELFLQMKD--ENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCK 227 (400)
Q Consensus 158 --------~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 227 (400)
.|.+++|.++|++|.. .++.||..+|+.++.+|++.|++++|.++|+.|.+.|+.|+..+|+.++.+|++
T Consensus 547 sLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k 626 (1060)
T PLN03218 547 ALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQ 626 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh
Confidence 7889999999999976 578999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 040367 228 NGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSL 307 (400)
Q Consensus 228 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 307 (400)
.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.|+.+|++.|++++|.++
T Consensus 627 ~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~l 706 (1060)
T PLN03218 627 KGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALEL 706 (1060)
T ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhccc
Q 040367 308 YGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTLRILKCE 387 (400)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 387 (400)
|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|.+.|++++|.+++++|.+.|+.
T Consensus 707 f~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~ 786 (1060)
T PLN03218 707 YEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIK 786 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHhhcC
Q 040367 388 LDIRAYNCLIDGL 400 (400)
Q Consensus 388 p~~~~~~~ll~~~ 400 (400)
||..+|++|+..|
T Consensus 787 pd~~tynsLIglc 799 (1060)
T PLN03218 787 PNLVMCRCITGLC 799 (1060)
T ss_pred CCHHHHHHHHHHH
Confidence 9999999998643
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.7e-63 Score=459.71 Aligned_cols=385 Identities=22% Similarity=0.371 Sum_probs=368.6
Q ss_pred CChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHH
Q 040367 15 PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLI 94 (400)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 94 (400)
||..+|+.++.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI 514 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI 514 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcC--CCCCC------------cccc
Q 040367 95 KGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASG--NGEFG------------VEGF 160 (400)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~------------~~~~ 160 (400)
.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|... +..++ ..|+
T Consensus 515 ~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ 594 (1060)
T PLN03218 515 DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQ 594 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCC
Confidence 999999999999999999999999999999999999999999999999999999763 32222 2899
Q ss_pred hHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHH
Q 040367 161 VDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDL 240 (400)
Q Consensus 161 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 240 (400)
+++|.++|+.|.+.+++|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++
T Consensus 595 ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~e 674 (1060)
T PLN03218 595 VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQD 674 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCch
Q 040367 241 MIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDV 320 (400)
Q Consensus 241 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 320 (400)
|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.++.||..+|+.|+.+|++.|++++|.++|++|.+.|+.||.
T Consensus 675 M~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~ 754 (1060)
T PLN03218 675 ARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNT 754 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----c-------------------CcHHHHHHH
Q 040367 321 VIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCK----N-------------------SYIVEAVEL 377 (400)
Q Consensus 321 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~a~~~ 377 (400)
.+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.++..|.+ . +..++|+.+
T Consensus 755 ~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~l 834 (1060)
T PLN03218 755 ITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMV 834 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHH
Confidence 99999999999999999999999999999999999999999876542 1 234689999
Q ss_pred HHHHHHhcccchhHHHHHHhhc
Q 040367 378 FRTLRILKCELDIRAYNCLIDG 399 (400)
Q Consensus 378 ~~~~~~~~~~p~~~~~~~ll~~ 399 (400)
|++|.+.|+.||..||+.+|.+
T Consensus 835 f~eM~~~Gi~Pd~~T~~~vL~c 856 (1060)
T PLN03218 835 YRETISAGTLPTMEVLSQVLGC 856 (1060)
T ss_pred HHHHHHCCCCCCHHHHHHHHHH
Confidence 9999999999999999999943
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.2e-58 Score=423.10 Aligned_cols=384 Identities=20% Similarity=0.322 Sum_probs=353.7
Q ss_pred chhHHHHhcCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 040367 2 CIFDYMLNMRPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRS 81 (400)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 81 (400)
++|++|...++.+||..+|+.++.++.+.++++.|.+++..|.+.|+.||..+|+.++..|++.|+++.|.++|++|.
T Consensus 108 ~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~-- 185 (697)
T PLN03081 108 ELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP-- 185 (697)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC--
Confidence 578888877766688999999999999999999999999999999999999999999999999999999999999886
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCc----
Q 040367 82 CFTPNAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGV---- 157 (400)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---- 157 (400)
.||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|..++.++.+.|....+.+++..+.+.+...+.
T Consensus 186 --~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n 263 (697)
T PLN03081 186 --ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSC 263 (697)
T ss_pred --CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHH
Confidence 47888999999999999999999999999999998999999999999999999999999998888877654333
Q ss_pred --------ccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC
Q 040367 158 --------EGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNG 229 (400)
Q Consensus 158 --------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 229 (400)
.|++++|.++|+.|.. +|..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|
T Consensus 264 ~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g 339 (697)
T PLN03081 264 ALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLA 339 (697)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Confidence 8899999999999964 5889999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 040367 230 KMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYG 309 (400)
Q Consensus 230 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 309 (400)
++++|.+++..|.+.|+.|+..+++.|+.+|++.|++++|.++|++|. .||..+|+.|+.+|++.|+.++|.++|+
T Consensus 340 ~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~ 415 (697)
T PLN03081 340 LLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFE 415 (697)
T ss_pred chHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999997 5789999999999999999999999999
Q ss_pred HHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcccc
Q 040367 310 EMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQR-DGVAADTWTYRTFIDGLCKNSYIVEAVELFRTLRILKCEL 388 (400)
Q Consensus 310 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 388 (400)
+|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++| ++.|
T Consensus 416 ~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p 492 (697)
T PLN03081 416 RMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKP 492 (697)
T ss_pred HHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCC
Confidence 999999999999999999999999999999999999986 589999999999999999999999999998876 4789
Q ss_pred hhHHHHHHhhcC
Q 040367 389 DIRAYNCLIDGL 400 (400)
Q Consensus 389 ~~~~~~~ll~~~ 400 (400)
+..+|++|+.+|
T Consensus 493 ~~~~~~~Ll~a~ 504 (697)
T PLN03081 493 TVNMWAALLTAC 504 (697)
T ss_pred CHHHHHHHHHHH
Confidence 999999999886
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=8.6e-57 Score=423.13 Aligned_cols=370 Identities=21% Similarity=0.308 Sum_probs=272.8
Q ss_pred CChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHH
Q 040367 15 PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLI 94 (400)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 94 (400)
||+.+||.++.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|.+.|+.+.|.+++..+.+.|+.||..+|+.++
T Consensus 251 ~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li 330 (857)
T PLN03077 251 RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLI 330 (857)
T ss_pred CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHH
Confidence 56777888888888888888888888888777777888888888888888888888888888777777777777777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCc------------ccchH
Q 040367 95 KGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGV------------EGFVD 162 (400)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------------~~~~~ 162 (400)
.+|++.|++++|.++|++|. .||..+|+.++.+|.+.|++++|+++|++|...+..++. .|+++
T Consensus 331 ~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~ 406 (857)
T PLN03077 331 QMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLD 406 (857)
T ss_pred HHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHH
Confidence 77777777777777777775 467777777777777777777777777777766644433 56666
Q ss_pred HHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 040367 163 KAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMI 242 (400)
Q Consensus 163 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 242 (400)
.+.++++.+.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+ +|..+|+.++.+|.+.|+.++|..+|++|.
T Consensus 407 ~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~ 482 (857)
T PLN03077 407 VGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQML 482 (857)
T ss_pred HHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7777777777666666666666666666666666666666666543 233444444444444444444444444444
Q ss_pred ----------------------------------HcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhH
Q 040367 243 ----------------------------------QIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSY 288 (400)
Q Consensus 243 ----------------------------------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 288 (400)
+.|+.++..++++++++|++.|+.++|..+|+.+ .+|..+|
T Consensus 483 ~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~ 557 (857)
T PLN03077 483 LTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSW 557 (857)
T ss_pred hCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhH
Confidence 4444444444455555566666666666666554 4677888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHh
Q 040367 289 SILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQ-RDGVAADTWTYRTFIDGLCK 367 (400)
Q Consensus 289 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~ 367 (400)
+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|. +.|+.|+..+|+.++++|.+
T Consensus 558 n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r 637 (857)
T PLN03077 558 NILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGR 637 (857)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh
Confidence 88888888888888888888888888888888888888888888888888888888888 56888888888888888888
Q ss_pred cCcHHHHHHHHHHHHHhcccchhHHHHHHhhcC
Q 040367 368 NSYIVEAVELFRTLRILKCELDIRAYNCLIDGL 400 (400)
Q Consensus 368 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~ 400 (400)
.|++++|.+++++|. ++||..+|++|+.+|
T Consensus 638 ~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac 667 (857)
T PLN03077 638 AGKLTEAYNFINKMP---ITPDPAVWGALLNAC 667 (857)
T ss_pred CCCHHHHHHHHHHCC---CCCCHHHHHHHHHHH
Confidence 888888888888884 688888888888876
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=7.2e-56 Score=407.54 Aligned_cols=374 Identities=19% Similarity=0.281 Sum_probs=356.5
Q ss_pred CChhhHHHHHHHHhccCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHH
Q 040367 15 PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSTG-LFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSL 93 (400)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 93 (400)
.+..+|+.++..+.+.|++++|+++|+.|...+ ..||..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+|+.+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 355689999999999999999999999998764 6899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCc------------ccch
Q 040367 94 IKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGV------------EGFV 161 (400)
Q Consensus 94 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------------~~~~ 161 (400)
+.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|+++|++|...+..++. .|..
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence 999999999999999999997 589999999999999999999999999999988766543 6788
Q ss_pred HHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 040367 162 DKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLM 241 (400)
Q Consensus 162 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 241 (400)
+.+.+++..+.+.|+.||..+|++++.+|++.|++++|.++|++|.. +|..+|+.++.+|++.|+.++|.++|++|
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999964 68999999999999999999999999999
Q ss_pred HHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchh
Q 040367 242 IQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVV 321 (400)
Q Consensus 242 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 321 (400)
.+.|+.||..+|+.++.+|++.|++++|.+++..|.+.|++||..+|+.|+.+|++.|++++|.++|++|.+ ||..
T Consensus 317 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~ 392 (697)
T PLN03081 317 RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLI 392 (697)
T ss_pred HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCee
Confidence 999999999999999999999999999999999999999999999999999999999999999999999964 6899
Q ss_pred hHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH-hcccchhHHHHHHhhcC
Q 040367 322 IYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTLRI-LKCELDIRAYNCLIDGL 400 (400)
Q Consensus 322 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~p~~~~~~~ll~~~ 400 (400)
+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|+.++|.++|+.|.+ .|+.|+..+|++++++|
T Consensus 393 t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l 472 (697)
T PLN03081 393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELL 472 (697)
T ss_pred eHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999985 69999999999999864
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=6.6e-56 Score=417.16 Aligned_cols=387 Identities=19% Similarity=0.269 Sum_probs=331.5
Q ss_pred hHHHHhcCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 040367 4 FDYMLNMRPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCF 83 (400)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 83 (400)
+..+.+.|.. |++.+||.++.+|++.|+++.|..+|++|.. ||..+|+.+|.+|++.|++++|+++|++|.+.|+
T Consensus 210 ~~~~~~~g~~-~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~ 284 (857)
T PLN03077 210 HAHVVRFGFE-LDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSV 284 (857)
T ss_pred HHHHHHcCCC-cccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 3344444444 5666778888888888888888888888863 6788899999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCC--------C
Q 040367 84 TPNAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGE--------F 155 (400)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------~ 155 (400)
.||..+|+.++.+|++.|+.+.|.+++..+.+.|+.||..+|+.|+.+|.+.|++++|.++|++|...+.. +
T Consensus 285 ~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~ 364 (857)
T PLN03077 285 DPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGY 364 (857)
T ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998765432 2
Q ss_pred CcccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHH
Q 040367 156 GVEGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEAS 235 (400)
Q Consensus 156 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 235 (400)
...|++++|+++|++|...|+.||..+|+.++.+|++.|+++.|.++++.+.+.|+.|+..+|+.++.+|++.|++++|.
T Consensus 365 ~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~ 444 (857)
T PLN03077 365 EKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKAL 444 (857)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHH
Confidence 33888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 040367 236 RLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKG 315 (400)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 315 (400)
++|++|.+ +|..+|+.++.+|++.|+.++|..+|++|.. +++||..+|+.++.+|++.|+.+.+.+++..+.+.|
T Consensus 445 ~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g 519 (857)
T PLN03077 445 EVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTG 519 (857)
T ss_pred HHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhC
Confidence 99999854 4677888888888888888888888888875 467777777766665555555555555555444443
Q ss_pred C------------------------------CCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 040367 316 I------------------------------KPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGL 365 (400)
Q Consensus 316 ~------------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 365 (400)
+ .||..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|
T Consensus 520 ~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~ 599 (857)
T PLN03077 520 IGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCAC 599 (857)
T ss_pred CCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHH
Confidence 3 4678889999999999999999999999999999999999999999999
Q ss_pred HhcCcHHHHHHHHHHHH-HhcccchhHHHHHHhhcC
Q 040367 366 CKNSYIVEAVELFRTLR-ILKCELDIRAYNCLIDGL 400 (400)
Q Consensus 366 ~~~g~~~~a~~~~~~~~-~~~~~p~~~~~~~ll~~~ 400 (400)
.+.|++++|.++|+.|. +.|+.|+..+|++++++|
T Consensus 600 ~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l 635 (857)
T PLN03077 600 SRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLL 635 (857)
T ss_pred hhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 99999999999999998 789999999999998764
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.98 E-value=1.4e-27 Score=230.14 Aligned_cols=382 Identities=13% Similarity=0.084 Sum_probs=287.6
Q ss_pred chhHHHHhcCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 040367 2 CIFDYMLNMRPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRS 81 (400)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 81 (400)
++|+.+++..|. +...+..+...+.+.|++++|...|+++.+.+ +.+..++..+...+...|+.++|...++++...
T Consensus 486 ~~~~~a~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 562 (899)
T TIGR02917 486 EAFEKALSIEPD--FFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAEL 562 (899)
T ss_pred HHHHHHHhhCCC--cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456777776665 66677778888888888888888888887764 446777888888888888888888888888776
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCc----
Q 040367 82 CFTPNAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGV---- 157 (400)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---- 157 (400)
+ +.+...+..++..+...|++++|..+++.+.+.. +.+..+|..+..++...|++++|...|+++....+....
T Consensus 563 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 640 (899)
T TIGR02917 563 N-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLL 640 (899)
T ss_pred C-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 4 3456677778888888888888888888887654 557778888888888888888888888888766543222
Q ss_pred -------ccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 040367 158 -------EGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGK 230 (400)
Q Consensus 158 -------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 230 (400)
.|++++|...++++.+.. +.+..++..++..+...|++++|.++++.+.+.+ +.+...+..+...+...|+
T Consensus 641 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~ 718 (899)
T TIGR02917 641 LADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKD 718 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCC
Confidence 677888888888887654 4456777888888888888888888888887764 4566677777778888888
Q ss_pred hHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 040367 231 MDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGE 310 (400)
Q Consensus 231 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 310 (400)
+++|...++++...+ |+..++..++.++.+.|++++|...++.+.+.. +.+...+..+...|...|++++|.+.|++
T Consensus 719 ~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 795 (899)
T TIGR02917 719 YPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRT 795 (899)
T ss_pred HHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 888888888887753 344566677778888888888888888877765 55677777788888888888888888888
Q ss_pred HHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcccchh
Q 040367 311 MLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTLRILKCELDI 390 (400)
Q Consensus 311 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 390 (400)
+.+.. +++...+..+...+...|+ .+|+.+++++.+.. +.+..++..+...+...|++++|.+.++++.+.+.. +.
T Consensus 796 ~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~ 871 (899)
T TIGR02917 796 VVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AA 871 (899)
T ss_pred HHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-Ch
Confidence 87764 3466777777788877787 77888888877652 335566677777778888888888888888875532 55
Q ss_pred HHHHHHh
Q 040367 391 RAYNCLI 397 (400)
Q Consensus 391 ~~~~~ll 397 (400)
.++..+.
T Consensus 872 ~~~~~l~ 878 (899)
T TIGR02917 872 AIRYHLA 878 (899)
T ss_pred HHHHHHH
Confidence 5555444
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.98 E-value=2.6e-27 Score=228.38 Aligned_cols=357 Identities=11% Similarity=0.045 Sum_probs=169.4
Q ss_pred ChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHH
Q 040367 16 PVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIK 95 (400)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 95 (400)
++.+|..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++++...+ +.+..++..+..
T Consensus 464 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 541 (899)
T TIGR02917 464 NASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAG 541 (899)
T ss_pred CcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 44445555555555555555555555554432 2233444444455555555555555555554432 223444444555
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCC-----------cccchHHH
Q 040367 96 GLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFG-----------VEGFVDKA 164 (400)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----------~~~~~~~a 164 (400)
.+.+.|++++|...++++...+ +.+...+..++..+.+.|++++|..+++.+....+... ..|++++|
T Consensus 542 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 620 (899)
T TIGR02917 542 LYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKA 620 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 5555555555555555544433 33444444455555555555555555555444332211 13445555
Q ss_pred HHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 040367 165 KELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQI 244 (400)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 244 (400)
...++++.+.. +.+...+..+..++.+.|++++|...++++.+.. +.+..++..+...+...|++++|.++++.+.+.
T Consensus 621 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 698 (899)
T TIGR02917 621 VSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ 698 (899)
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 55555544432 2233444444555555555555555555554432 233444445555555555555555555555444
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHH
Q 040367 245 GVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYN 324 (400)
Q Consensus 245 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 324 (400)
+ +.+...+..+...+...|++++|...|+.+.... |+..++..++.++...|++++|.+.++++.+.. +.+...+.
T Consensus 699 ~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~ 774 (899)
T TIGR02917 699 H-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRT 774 (899)
T ss_pred C-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 2 2233444444455555555555555555554432 222444444555555555555555555554432 22344444
Q ss_pred HHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 040367 325 TLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTLRI 383 (400)
Q Consensus 325 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 383 (400)
.+...+...|++++|..+|+++.+.. +++..++..+...+...|+ ++|+..++++.+
T Consensus 775 ~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~ 831 (899)
T TIGR02917 775 ALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALK 831 (899)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHh
Confidence 44555555555555555555554432 2344444555555555555 445555555543
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.95 E-value=1.7e-23 Score=181.71 Aligned_cols=299 Identities=15% Similarity=0.084 Sum_probs=162.0
Q ss_pred HHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCh
Q 040367 62 FCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPN---VFTYNTLINGLYRTGHT 138 (400)
Q Consensus 62 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~ 138 (400)
+...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..++..+.+.|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 344555555666666555543 22344555555555556666666666555554321111 13445555556666654
Q ss_pred HHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----
Q 040367 139 IVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPN---- 214 (400)
Q Consensus 139 ~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---- 214 (400)
++|..+|+++.. .. +.+..++..++..+.+.|++++|.+.++.+.+.+..+.
T Consensus 124 ~~A~~~~~~~l~-----------------------~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 179 (389)
T PRK11788 124 DRAEELFLQLVD-----------------------EG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEI 179 (389)
T ss_pred HHHHHHHHHHHc-----------------------CC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHH
Confidence 444444433322 11 23445556666666666666666666666655432211
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 040367 215 VVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILING 294 (400)
Q Consensus 215 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 294 (400)
...+..+...+.+.|++++|...++++.+.. +.+...+..+...+.+.|++++|...++++.+.+......++..++.+
T Consensus 180 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~ 258 (389)
T PRK11788 180 AHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMEC 258 (389)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHH
Confidence 1123344555556666666666666665542 223445555666666666666666666666654312123445566666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCcH
Q 040367 295 YCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCK---NSYI 371 (400)
Q Consensus 295 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~ 371 (400)
|...|++++|.+.++++.+.. |+...+..++..+.+.|++++|..+++++.+. .|+...+..++..+.. .|+.
T Consensus 259 ~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~ 334 (389)
T PRK11788 259 YQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRA 334 (389)
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccc
Confidence 666666666666666666542 34444455666666666666666666666654 4566566655555443 3466
Q ss_pred HHHHHHHHHHHHhcccchh
Q 040367 372 VEAVELFRTLRILKCELDI 390 (400)
Q Consensus 372 ~~a~~~~~~~~~~~~~p~~ 390 (400)
++++.++++|.+.++.|+.
T Consensus 335 ~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 335 KESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred hhHHHHHHHHHHHHHhCCC
Confidence 6666666666665555544
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.94 E-value=3.1e-23 Score=180.09 Aligned_cols=316 Identities=14% Similarity=0.069 Sum_probs=259.8
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC---hhhHHHHHHH
Q 040367 20 FNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPN---AVTFTSLIKG 96 (400)
Q Consensus 20 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~ 96 (400)
.......+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..++..
T Consensus 38 ~y~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~ 116 (389)
T PRK11788 38 DYFKGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQD 116 (389)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 3334556778899999999999999875 44677899999999999999999999999987532221 2567888999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCC
Q 040367 97 LCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENI 176 (400)
Q Consensus 97 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 176 (400)
|...|++++|..+|+++.+.. +.+..++..++..+.+.|+ +++|.+.++.+.+.+.
T Consensus 117 ~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~-----------------------~~~A~~~~~~~~~~~~ 172 (389)
T PRK11788 117 YLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKD-----------------------WQKAIDVAERLEKLGG 172 (389)
T ss_pred HHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhch-----------------------HHHHHHHHHHHHHhcC
Confidence 999999999999999999764 5678899999999999988 7889999999987653
Q ss_pred CCC----hHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHh
Q 040367 177 NPD----VVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFV 252 (400)
Q Consensus 177 ~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 252 (400)
.+. ...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......+
T Consensus 173 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 251 (389)
T PRK11788 173 DSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEV 251 (389)
T ss_pred CcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHH
Confidence 322 1245567778889999999999999998764 44566788888999999999999999999998643333567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHh
Q 040367 253 YNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFE 332 (400)
Q Consensus 253 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 332 (400)
+..++.+|...|++++|...++++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+..
T Consensus 252 ~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~ 327 (389)
T PRK11788 252 LPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLA 327 (389)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhh
Confidence 888999999999999999999999887 456667788999999999999999999999886 5788888887777664
Q ss_pred ---hCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcH
Q 040367 333 ---IHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYI 371 (400)
Q Consensus 333 ---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 371 (400)
.|+.+++..+++++.+.++.|++. ..|.++|-.
T Consensus 328 ~~~~g~~~~a~~~~~~~~~~~~~~~p~------~~c~~cg~~ 363 (389)
T PRK11788 328 EAEEGRAKESLLLLRDLVGEQLKRKPR------YRCRNCGFT 363 (389)
T ss_pred ccCCccchhHHHHHHHHHHHHHhCCCC------EECCCCCCC
Confidence 568999999999999887777766 236666654
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=1.3e-23 Score=175.90 Aligned_cols=362 Identities=16% Similarity=0.132 Sum_probs=303.3
Q ss_pred CChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhh-HHHH
Q 040367 15 PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVT-FTSL 93 (400)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l 93 (400)
.-.++|..+...+-..|++++|+.+++.+.+.. +.....|..+..++...|+.+.|.+.|...++. .|+... ...+
T Consensus 114 q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~l 190 (966)
T KOG4626|consen 114 QGAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDL 190 (966)
T ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhcch
Confidence 356789999999999999999999999999874 346789999999999999999999999999886 444433 3345
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCc-----------ccchH
Q 040367 94 IKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGV-----------EGFVD 162 (400)
Q Consensus 94 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----------~~~~~ 162 (400)
...+...|++++|...|.+..+.. +-=...|..|.-.+-..|+...|++.|++....++.+.. .+.++
T Consensus 191 gnLlka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 191 GNLLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred hHHHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcch
Confidence 555667899999999999888763 334678999999999999999999999999888776544 66778
Q ss_pred HHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 040367 163 KAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMI 242 (400)
Q Consensus 163 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 242 (400)
+|+..+.+..... +.....+..+...|...|+.+.|+..|++.++.. +.-...|+.+..++...|+..+|.+.+++.+
T Consensus 270 ~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL 347 (966)
T KOG4626|consen 270 RAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKAL 347 (966)
T ss_pred HHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence 8888888777653 3456677888888999999999999999999864 3346789999999999999999999999999
Q ss_pred HcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc-hh
Q 040367 243 QIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPD-VV 321 (400)
Q Consensus 243 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~ 321 (400)
... +......+.|...|...|.+++|..+|....+.. +.-...++.|...|.++|++++|+..+++.++. +|+ ..
T Consensus 348 ~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAd 423 (966)
T KOG4626|consen 348 RLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFAD 423 (966)
T ss_pred HhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHH
Confidence 863 3356788899999999999999999999988764 334567889999999999999999999999985 555 45
Q ss_pred hHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcccchh
Q 040367 322 IYNTLFVVLFEIHQVERAFKLFDEMQRDGVAAD-TWTYRTFIDGLCKNSYIVEAVELFRTLRILKCELDI 390 (400)
Q Consensus 322 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 390 (400)
.|+.+...|-..|+.+.|...+.+++.. .|. ...++.|...|-..|+..+|+.-|++.++ ++||.
T Consensus 424 a~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDf 489 (966)
T KOG4626|consen 424 ALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDF 489 (966)
T ss_pred HHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCC
Confidence 8899999999999999999999999875 454 67889999999999999999999999987 67775
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.93 E-value=1.8e-21 Score=177.02 Aligned_cols=332 Identities=14% Similarity=0.064 Sum_probs=210.1
Q ss_pred hHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 040367 19 SFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLC 98 (400)
Q Consensus 19 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 98 (400)
-.-.++..+.+.|++++|+.+++...... +-+...+..++.+....|+++.|.+.++++.... +.+...+..+...+.
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~ 121 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLL 121 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 34556778888999999999999988874 3456667777778888999999999999998875 346677888888999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCC
Q 040367 99 AESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENINP 178 (400)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 178 (400)
..|++++|...+++..... +.+...+..+...+...|++++|...++.+....+.
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~------------------------ 176 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP------------------------ 176 (656)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC------------------------
Confidence 9999999999999998764 456778888999999999977777776665433221
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 040367 179 DVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMD 258 (400)
Q Consensus 179 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 258 (400)
+...+..+ ..+...|++++|...++.+.+....++...+..+..++...|++++|...++++.+.. +.+...+..+..
T Consensus 177 ~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~ 254 (656)
T PRK15174 177 RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGL 254 (656)
T ss_pred CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 22222222 2345556666666666665544322233333334455556666666666666665543 224455555666
Q ss_pred HHHhcCCHHH----HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhC
Q 040367 259 GFCLTGRVNR----AKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIH 334 (400)
Q Consensus 259 ~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 334 (400)
++...|++++ |...++++.+.. +.+...+..+...+...|++++|...++++.+.... +...+..+..++.+.|
T Consensus 255 ~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G 332 (656)
T PRK15174 255 AYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVG 332 (656)
T ss_pred HHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCC
Confidence 6666666553 566666665543 334555566666666666666666666666654322 3444555556666666
Q ss_pred cHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 040367 335 QVERAFKLFDEMQRDGVAADT-WTYRTFIDGLCKNSYIVEAVELFRTLRI 383 (400)
Q Consensus 335 ~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 383 (400)
++++|...++++.+. .|+. ..+..+..++...|++++|...|++..+
T Consensus 333 ~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 333 QYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred CHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666666666665553 2222 2233334455566666666666666554
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.93 E-value=8.1e-21 Score=173.36 Aligned_cols=357 Identities=11% Similarity=0.008 Sum_probs=274.2
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 040367 20 FNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCA 99 (400)
Q Consensus 20 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 99 (400)
+......+.+.|++++|+..|++.... .|+...|..+..+|.+.|++++|++.++..++.+ +.+...+..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 556778899999999999999999876 5788899999999999999999999999999875 3467788889999999
Q ss_pred cCCHHHHHHHHHHHHHcCC-----------------------------CCCHHHHHHHHH--------------------
Q 040367 100 ESRIMEAAALFTKLRVFGC-----------------------------EPNVFTYNTLIN-------------------- 130 (400)
Q Consensus 100 ~~~~~~a~~~~~~~~~~~~-----------------------------~~~~~~~~~l~~-------------------- 130 (400)
.|++++|+..|..+...+- +++...+..+..
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 9999999876654432210 000000000000
Q ss_pred ----------HH------HhcCChHHHHHHHHHHHcCCCC-C-------------CcccchHHHHHHHHHHHhCCCCCCh
Q 040367 131 ----------GL------YRTGHTIVALNLFEEMASGNGE-F-------------GVEGFVDKAKELFLQMKDENINPDV 180 (400)
Q Consensus 131 ----------~~------~~~~~~~~a~~~~~~~~~~~~~-~-------------~~~~~~~~a~~~~~~~~~~~~~~~~ 180 (400)
.. ...+++++|...|+.....+.. + ...|++++|+..+++..... +...
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~ 365 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVT 365 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcH
Confidence 00 1125678888888888865421 1 11788999999999988764 3346
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 040367 181 VTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGF 260 (400)
Q Consensus 181 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 260 (400)
..|..+..++...|++++|+..++++.+.. +.+...+..+...+...|++++|...|++.++.. +.+...+..+..++
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~ 443 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHH
Confidence 678888888999999999999999998764 4567888889999999999999999999998864 33567777888899
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchh------hHHHHHHHHHhhC
Q 040367 261 CLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVV------IYNTLFVVLFEIH 334 (400)
Q Consensus 261 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~ 334 (400)
.+.|++++|+..|++..+.. +.+...++.+...+...|++++|.+.|++..+.....+.. .++.....+...|
T Consensus 444 ~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~ 522 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQ 522 (615)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhh
Confidence 99999999999999988764 5567888999999999999999999999988764321111 1122222333469
Q ss_pred cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Q 040367 335 QVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTLRIL 384 (400)
Q Consensus 335 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 384 (400)
++++|.++++++.+.. +.+...+..+...+...|++++|++.|++..+.
T Consensus 523 ~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 523 DFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred hHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999999999988763 334567888999999999999999999998764
No 14
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.93 E-value=1.8e-21 Score=188.78 Aligned_cols=371 Identities=11% Similarity=0.036 Sum_probs=233.0
Q ss_pred hhHHHHhcCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCC-CHHHH------------HHHHHHHHhcCChh
Q 040367 3 IFDYMLNMRPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFP-DLYTY------------NILINCFCKMGRVS 69 (400)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~------------~~l~~~~~~~~~~~ 69 (400)
.|+..++..|. +...+..+...+.+.|++++|+..|++..+..... ....+ ......+.+.|+++
T Consensus 291 ~l~~aL~~~P~--~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~ 368 (1157)
T PRK11447 291 ELQQAVRANPK--DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLA 368 (1157)
T ss_pred HHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHH
Confidence 45556665554 66666666677777777777777777666543111 11111 11233455667777
Q ss_pred hHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 040367 70 HGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMA 149 (400)
Q Consensus 70 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 149 (400)
+|+..++++.+.. +.+...+..+..++...|++++|++.|+++.+.. +.+...+..+...+. .++.++|+.+++.+.
T Consensus 369 eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~ 445 (1157)
T PRK11447 369 QAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLS 445 (1157)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCC
Confidence 7777777766653 2344555566666777777777777777766553 334445555555543 345566665555432
Q ss_pred cCCC--------------------CCCcccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 040367 150 SGNG--------------------EFGVEGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQ 209 (400)
Q Consensus 150 ~~~~--------------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 209 (400)
.... .+...|++++|++.+++..+.. |.+...+..+...+.+.|++++|...++++.+.
T Consensus 446 ~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~ 524 (1157)
T PRK11447 446 ASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ 524 (1157)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 2110 0112577788888888877764 345666777777888888888888888887764
Q ss_pred CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc---------------------------------------CCCCCH
Q 040367 210 GVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQI---------------------------------------GVRPNA 250 (400)
Q Consensus 210 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------------------------------~~~~~~ 250 (400)
. +.+...+..+...+...++.++|...++.+... ..+.+.
T Consensus 525 ~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~ 603 (1157)
T PRK11447 525 K-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPST 603 (1157)
T ss_pred C-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCc
Confidence 3 223333333333334444444444444332110 123345
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHH
Q 040367 251 FVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVL 330 (400)
Q Consensus 251 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 330 (400)
..+..+...+.+.|++++|+..|+++.+.. +.+...+..++..+...|++++|.+.++.+.+.. +.+...+..+..++
T Consensus 604 ~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~ 681 (1157)
T PRK11447 604 RIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAW 681 (1157)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHH
Confidence 556677778888888888888888888775 5567788888888888888888888888777653 22455566677788
Q ss_pred HhhCcHHHHHHHHHHHHHcCC--CC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 040367 331 FEIHQVERAFKLFDEMQRDGV--AA---DTWTYRTFIDGLCKNSYIVEAVELFRTLR 382 (400)
Q Consensus 331 ~~~~~~~~a~~~~~~~~~~~~--~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 382 (400)
...|++++|.++++++..... +| +...+..+...+...|++++|++.|++.+
T Consensus 682 ~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 682 AALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred HhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888888888888888876522 12 23455666777888888888888888886
No 15
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.93 E-value=1.2e-20 Score=171.68 Aligned_cols=347 Identities=9% Similarity=0.013 Sum_probs=260.3
Q ss_pred hhHHHHhcCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 040367 3 IFDYMLNMRPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSC 82 (400)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 82 (400)
+++..+...|. +...+..++.+....|+++.|+..|+++.+.. |.+...+..+...+...|++++|...++++.+..
T Consensus 64 l~~~~l~~~p~--~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~ 140 (656)
T PRK15174 64 LLSDRVLTAKN--GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF 140 (656)
T ss_pred HhHHHHHhCCC--chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 45666677776 56677777888889999999999999999875 5567889999999999999999999999999874
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchH
Q 040367 83 FTPNAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVD 162 (400)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 162 (400)
+.+...+..+...+...|++++|...++.+.... +.+...+..+ ..+...|++++|...++.+.
T Consensus 141 -P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l------------- 204 (656)
T PRK15174 141 -SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALL------------- 204 (656)
T ss_pred -CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHH-------------
Confidence 4467788889999999999999999999887664 3344444443 34778888666666655543
Q ss_pred HHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHH----HHHHH
Q 040367 163 KAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDE----ASRLL 238 (400)
Q Consensus 163 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~ 238 (400)
+....++......+..++...|++++|+..++++.+.+ +.+...+..+...+...|++++ |...+
T Consensus 205 ----------~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~ 273 (656)
T PRK15174 205 ----------PFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHW 273 (656)
T ss_pred ----------hcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHH
Confidence 33212233444555678889999999999999998764 4567788888889999999885 79999
Q ss_pred HHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 040367 239 DLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKP 318 (400)
Q Consensus 239 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 318 (400)
+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+..++.+.|++++|.+.++++.+.+..
T Consensus 274 ~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~- 350 (656)
T PRK15174 274 RHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV- 350 (656)
T ss_pred HHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-
Confidence 9998864 3367788889999999999999999999998875 556777888889999999999999999999876422
Q ss_pred chhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcCcHHHHHHHHHHHH
Q 040367 319 DVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTW----TYRTFIDGLCKNSYIVEAVELFRTLR 382 (400)
Q Consensus 319 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~ 382 (400)
+...+..+..++...|++++|...|+++.+....-... ....+-.++...+..++...+..++.
T Consensus 351 ~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~~~~~~~~~~~~~~~W~~~~~ 418 (656)
T PRK15174 351 TSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLALDGQISAVNLPPERLDWAWEVA 418 (656)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHHHHHHhcCCccchhhHHHHHh
Confidence 22334445677889999999999999988752211122 22233333444444444434555554
No 16
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.93 E-value=2e-20 Score=173.77 Aligned_cols=379 Identities=10% Similarity=-0.010 Sum_probs=283.8
Q ss_pred hhHHHHhcCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 040367 3 IFDYMLNMRPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSC 82 (400)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 82 (400)
+|..+....+ .+...+..+...+.+.|++++|..+|++..+.. +.+...+..+..++...|++++|+..++++.+..
T Consensus 37 ~~~~~~~~~~--~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~ 113 (765)
T PRK10049 37 VYNRYRVHMQ--LPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA 113 (765)
T ss_pred HHHHHHhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 4555554333 366678888999999999999999999988764 4567778888888999999999999999998874
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCC----------
Q 040367 83 FTPNAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGN---------- 152 (400)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------- 152 (400)
+.+.. +..+..++...|++++|+..++++.+.. +.+...+..+..++...+..+.|+..++.+....
T Consensus 114 -P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~ 190 (765)
T PRK10049 114 -PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADA 190 (765)
T ss_pred -CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34555 8888888999999999999999999874 4466677778888888899998998887655410
Q ss_pred ----------CCCCcccch---HHHHHHHHHHHhC-CCCCChH-hHH----HHHHHHHhcCCHHHHHHHHHHHHhCCCC-
Q 040367 153 ----------GEFGVEGFV---DKAKELFLQMKDE-NINPDVV-TYT----SVIRGFCYANDWNEAKCLLIEMMDQGVQ- 212 (400)
Q Consensus 153 ----------~~~~~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~- 212 (400)
......+++ ++|++.++.+.+. ...|+.. .+. ..+.++...|++++|+..|+.+.+.+.+
T Consensus 191 ~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~ 270 (765)
T PRK10049 191 AAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQII 270 (765)
T ss_pred HHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCC
Confidence 000112233 6788888888753 1122221 111 1133456779999999999999987532
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC---CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--------
Q 040367 213 PNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRP---NAFVYNTLMDGFCLTGRVNRAKELFVSMESMGC-------- 281 (400)
Q Consensus 213 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------- 281 (400)
|+. ....+...|...|++++|...|+++.+..... .......+..++...|++++|...++.+.....
T Consensus 271 P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~ 349 (765)
T PRK10049 271 PPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGS 349 (765)
T ss_pred CHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCC
Confidence 322 22335778999999999999999988753211 134456677788999999999999999987531
Q ss_pred ---CCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCH
Q 040367 282 ---THT---VFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADT 355 (400)
Q Consensus 282 ---~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 355 (400)
.|+ ...+..+...+...|++++|++.++++.... +.+...+..+...+...|++++|++.++++.... +.+.
T Consensus 350 ~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~ 427 (765)
T PRK10049 350 PTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNI 427 (765)
T ss_pred CCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCh
Confidence 122 2245567788899999999999999998874 4467888899999999999999999999999863 3347
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHhcccchhHH
Q 040367 356 WTYRTFIDGLCKNSYIVEAVELFRTLRILKCELDIRA 392 (400)
Q Consensus 356 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 392 (400)
..+...+..+...|++++|..+++++++. .|+...
T Consensus 428 ~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~ 462 (765)
T PRK10049 428 NLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDPG 462 (765)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHH
Confidence 77778888899999999999999999973 555543
No 17
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.92 E-value=5.2e-21 Score=160.51 Aligned_cols=350 Identities=14% Similarity=0.118 Sum_probs=295.7
Q ss_pred chhHHHHhcCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChhhHHHHHHHHHh
Q 040367 2 CIFDYMLNMRPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLY-TYNILINCFCKMGRVSHGFVVLGRILR 80 (400)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~ 80 (400)
.++..+++..|. .++.|-.+..++...|+.+.|.+.|.+..+. .|+.. ....+...+-..|+.++|...|.+.++
T Consensus 137 ~~y~~aiel~p~--fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~ 212 (966)
T KOG4626|consen 137 ALYRAAIELKPK--FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIE 212 (966)
T ss_pred HHHHHHHhcCch--hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHHHh
Confidence 467778888876 8999999999999999999999999999987 46544 445566677779999999999999988
Q ss_pred cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCC-----
Q 040367 81 SCFTPNAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEF----- 155 (400)
Q Consensus 81 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----- 155 (400)
.. +--...|..|...+-..|+...|++.|++..+.. +--...|..|...|...+.++.|+..+.+.....+..
T Consensus 213 ~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~g 290 (966)
T KOG4626|consen 213 TQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHG 290 (966)
T ss_pred hC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhcc
Confidence 74 2235678999999999999999999999998764 3347789999999999999999999999988765543
Q ss_pred ------CcccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC
Q 040367 156 ------GVEGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNG 229 (400)
Q Consensus 156 ------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 229 (400)
-.+|.++.|++.+++..+.. |-=...|+.|..++...|++.+|.+.|.+.+... +......+.+...+...|
T Consensus 291 Nla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~ 368 (966)
T KOG4626|consen 291 NLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQG 368 (966)
T ss_pred ceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhc
Confidence 33999999999999999874 3336789999999999999999999999999863 446778999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 040367 230 KMDEASRLLDLMIQIGVRP-NAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLY 308 (400)
Q Consensus 230 ~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 308 (400)
.+++|..+|....+- .| -...++.|...|-++|++++|+..|++..+.. +.-...|+.+...|-..|+.+.|.+.+
T Consensus 369 ~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~-P~fAda~~NmGnt~ke~g~v~~A~q~y 445 (966)
T KOG4626|consen 369 KIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK-PTFADALSNMGNTYKEMGDVSAAIQCY 445 (966)
T ss_pred cchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC-chHHHHHHhcchHHHHhhhHHHHHHHH
Confidence 999999999999885 33 35678899999999999999999999999874 334678999999999999999999999
Q ss_pred HHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 040367 309 GEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAAD-TWTYRTFIDGL 365 (400)
Q Consensus 309 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~ 365 (400)
.+++..++. -...++.|...+-..|+..+|++-++..++. .|| +..|..++.+.
T Consensus 446 ~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--kPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 446 TRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALKL--KPDFPDAYCNLLHCL 500 (966)
T ss_pred HHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--CCCCchhhhHHHHHH
Confidence 999986422 3457889999999999999999999999985 555 55666666554
No 18
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.91 E-value=2.2e-19 Score=174.42 Aligned_cols=371 Identities=12% Similarity=0.064 Sum_probs=226.8
Q ss_pred hhHHHHhcCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHH----------------HHHHHHHHhcC
Q 040367 3 IFDYMLNMRPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTY----------------NILINCFCKMG 66 (400)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----------------~~l~~~~~~~~ 66 (400)
.+++++...|. |+..+..++..+.+.|+.++|.+.++++.+.. +.+.... ..+...+...|
T Consensus 50 ~l~kl~~~~p~--~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g 126 (1157)
T PRK11447 50 SLYRLELIDPN--NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLSTPEGRQALQQARLLATTG 126 (1157)
T ss_pred HHHHHHccCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCC
Confidence 45666666666 88889999999999999999999999999875 3343332 23344678899
Q ss_pred ChhhHHHHHHHHHhcCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 040367 67 RVSHGFVVLGRILRSCFTPNAV-TFTSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLF 145 (400)
Q Consensus 67 ~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 145 (400)
++++|.+.|+.+.+.+ +|+.. ............|+.++|.+.++++.+.. +.+...+..+...+...|+.++|+..+
T Consensus 127 ~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l 204 (1157)
T PRK11447 127 RTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVL 204 (1157)
T ss_pred CHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 9999999999998764 33332 11122222334689999999999999875 557788889999999999999999999
Q ss_pred HHHHcCCCCCCc-------------------------------ccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcC
Q 040367 146 EEMASGNGEFGV-------------------------------EGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYAN 194 (400)
Q Consensus 146 ~~~~~~~~~~~~-------------------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 194 (400)
+++......... ......+...+.........|+.. .......+...|
T Consensus 205 ~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~~~G~~~~~~g 283 (1157)
T PRK11447 205 EQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-ARAQGLAAVDSG 283 (1157)
T ss_pred HHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-HHHHHHHHHHCC
Confidence 988654321000 000111222222211111111111 112233455566
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH-H------------hHHHHHHHHH
Q 040367 195 DWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNA-F------------VYNTLMDGFC 261 (400)
Q Consensus 195 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~------------~~~~l~~~~~ 261 (400)
++++|+..|++.++.. +.+...+..+..++.+.|++++|...|++..+....... . ........+.
T Consensus 284 ~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~ 362 (1157)
T PRK11447 284 QGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAAL 362 (1157)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHH
Confidence 6666666666666542 335555666666666666666666666666554221110 0 0112234455
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhH------------------
Q 040367 262 LTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIY------------------ 323 (400)
Q Consensus 262 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------------------ 323 (400)
+.|++++|...|+++.+.. +.+...+..+...+...|++++|++.|+++.+.... +...+
T Consensus 363 ~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~~~A~~~ 440 (1157)
T PRK11447 363 KANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSPEKALAF 440 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCHHHHHHH
Confidence 6666666666666666554 334455555666666666666666666666554211 11111
Q ss_pred ------------------------HHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHH
Q 040367 324 ------------------------NTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFR 379 (400)
Q Consensus 324 ------------------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 379 (400)
..+...+...|++++|++.++++++.. +.+...+..+...|.+.|++++|...++
T Consensus 441 l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~ 519 (1157)
T PRK11447 441 IASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMR 519 (1157)
T ss_pred HHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 122334456788888888888887752 2246667777778888888888888888
Q ss_pred HHHH
Q 040367 380 TLRI 383 (400)
Q Consensus 380 ~~~~ 383 (400)
++.+
T Consensus 520 ~al~ 523 (1157)
T PRK11447 520 RLAQ 523 (1157)
T ss_pred HHHH
Confidence 8775
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.91 E-value=3.5e-19 Score=162.70 Aligned_cols=328 Identities=12% Similarity=0.047 Sum_probs=257.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 040367 54 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLY 133 (400)
Q Consensus 54 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 133 (400)
.+......+.+.|++++|+..|++.+.. .|+...|..+..+|.+.|++++|++.+++..+.. +.+...|..+..++.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 3556778899999999999999999876 5677889999999999999999999999999875 457789999999999
Q ss_pred hcCChHHHHHHHHHHHcCC------------------------------CCC----------------------------
Q 040367 134 RTGHTIVALNLFEEMASGN------------------------------GEF---------------------------- 155 (400)
Q Consensus 134 ~~~~~~~a~~~~~~~~~~~------------------------------~~~---------------------------- 155 (400)
..|++++|+..|..+...+ +..
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 9999999987554332110 000
Q ss_pred -------------------CcccchHHHHHHHHHHHhCC--CCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 040367 156 -------------------GVEGFVDKAKELFLQMKDEN--INPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPN 214 (400)
Q Consensus 156 -------------------~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 214 (400)
...+.+++|.+.|+...+.+ .+.....+..+...+...|++++|+..+++.++.. +..
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~ 364 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRV 364 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCc
Confidence 00145778888888887754 23345667888888889999999999999998763 334
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 040367 215 VVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILING 294 (400)
Q Consensus 215 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 294 (400)
...|..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...|++..+.. +.+...+..+...
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~ 442 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVT 442 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHH
Confidence 6678888888999999999999999998864 3467788889999999999999999999998876 5567778888899
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHhc
Q 040367 295 YCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADT------WTYRTFIDGLCKN 368 (400)
Q Consensus 295 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~ 368 (400)
+.+.|++++|+..+++.++.. +.+...++.+...+...|++++|++.|++..+.....+. ..+......+...
T Consensus 443 ~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~ 521 (615)
T TIGR00990 443 QYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWK 521 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHh
Confidence 999999999999999998763 336778888999999999999999999998875321111 1122222233446
Q ss_pred CcHHHHHHHHHHHHHhcccchh
Q 040367 369 SYIVEAVELFRTLRILKCELDI 390 (400)
Q Consensus 369 g~~~~a~~~~~~~~~~~~~p~~ 390 (400)
|++++|.+++++.... .|+.
T Consensus 522 ~~~~eA~~~~~kAl~l--~p~~ 541 (615)
T TIGR00990 522 QDFIEAENLCEKALII--DPEC 541 (615)
T ss_pred hhHHHHHHHHHHHHhc--CCCc
Confidence 9999999999998864 4544
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.89 E-value=6.8e-18 Score=157.10 Aligned_cols=364 Identities=10% Similarity=0.023 Sum_probs=273.2
Q ss_pred ChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHH
Q 040367 16 PVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIK 95 (400)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 95 (400)
++.-..-.+......|+.++|++++++..... +.+...+..+...+...|++++|.+++++.++.. +.+...+..++.
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 55555666778889999999999999998733 4566779999999999999999999999998874 445777888889
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCc-----------ccchHHH
Q 040367 96 GLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGV-----------EGFVDKA 164 (400)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----------~~~~~~a 164 (400)
++...|++++|...++++.+.. +.+.. +..+..++...|+.++|+..++++....+.... .+..+.|
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~A 169 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPA 169 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHH
Confidence 9999999999999999999874 45666 889999999999999999999999988776433 4566677
Q ss_pred HHHHHHHHhCCCCCCh------HhHHHHHHHHH-----hcCCH---HHHHHHHHHHHhC-CCCCCHH-HH----HHHHHH
Q 040367 165 KELFLQMKDENINPDV------VTYTSVIRGFC-----YANDW---NEAKCLLIEMMDQ-GVQPNVV-TF----NVIMDE 224 (400)
Q Consensus 165 ~~~~~~~~~~~~~~~~------~~~~~l~~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~----~~l~~~ 224 (400)
++.++.... .|+. .....++.... ..+++ ++|++.++.+.+. ...|+.. .+ ...+..
T Consensus 170 l~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~ 246 (765)
T PRK10049 170 LGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGA 246 (765)
T ss_pred HHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHH
Confidence 777766554 1221 11222222222 22234 7788888888854 1222221 11 111345
Q ss_pred HHhCCChHHHHHHHHHHHHcCCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---ChhhHHHHHHHHHhcCC
Q 040367 225 LCKNGKMDEASRLLDLMIQIGVR-PNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTH---TVFSYSILINGYCKNKE 300 (400)
Q Consensus 225 ~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~ 300 (400)
+...|++++|...|+++.+.+.+ |+. ....+..+|...|++++|+..|+++.+..... .......+..++...|+
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~ 325 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESEN 325 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhccc
Confidence 56779999999999999887532 332 22335778999999999999999987653111 12346667778899999
Q ss_pred HHHHHHHHHHHHhCCC-----------CCc---hhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 040367 301 IEGALSLYGEMLSKGI-----------KPD---VVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLC 366 (400)
Q Consensus 301 ~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 366 (400)
+++|.++++.+.+... .|+ ...+..+...+...|++++|+++++++... .+.+...+..+...+.
T Consensus 326 ~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~l~~ 404 (765)
T PRK10049 326 YPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRIDYASVLQ 404 (765)
T ss_pred HHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHH
Confidence 9999999999987531 122 124456777888999999999999999886 4556888999999999
Q ss_pred hcCcHHHHHHHHHHHHHhcccchh
Q 040367 367 KNSYIVEAVELFRTLRILKCELDI 390 (400)
Q Consensus 367 ~~g~~~~a~~~~~~~~~~~~~p~~ 390 (400)
..|++++|++.+++... +.|+.
T Consensus 405 ~~g~~~~A~~~l~~al~--l~Pd~ 426 (765)
T PRK10049 405 ARGWPRAAENELKKAEV--LEPRN 426 (765)
T ss_pred hcCCHHHHHHHHHHHHh--hCCCC
Confidence 99999999999999997 45765
No 21
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.88 E-value=3.1e-17 Score=150.16 Aligned_cols=375 Identities=10% Similarity=-0.004 Sum_probs=246.8
Q ss_pred chhHHHHhcCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 040367 2 CIFDYMLNMRPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRS 81 (400)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 81 (400)
+.|+.+++..|. +......++..+...|+.++|+..+++..... +........+...+...|++++|+++|+++.+.
T Consensus 55 ~~L~qaL~~~P~--~~~av~dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~ 131 (822)
T PRK14574 55 DYLQEESKAGPL--QSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQALALWQSSLKK 131 (822)
T ss_pred HHHHHHHhhCcc--chhhHHHHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345555555554 32111155556666666666666666666211 222333333345666666777777777766665
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCc----
Q 040367 82 CFTPNAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGV---- 157 (400)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---- 157 (400)
.+ .+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|+..++++....+....
T Consensus 132 dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~ 208 (822)
T PRK14574 132 DP-TNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKN 208 (822)
T ss_pred CC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 42 23455555566666666666666666666654 344444433333333344444566666666555433221
Q ss_pred ----------------------------------------------------cc---chHHHHHHHHHHHhC--CCCCCh
Q 040367 158 ----------------------------------------------------EG---FVDKAKELFLQMKDE--NINPDV 180 (400)
Q Consensus 158 ----------------------------------------------------~~---~~~~a~~~~~~~~~~--~~~~~~ 180 (400)
.. ..+.|+.-++.+... ..|+..
T Consensus 209 ~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~ 288 (822)
T PRK14574 209 HLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQ 288 (822)
T ss_pred HHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccc
Confidence 11 234455556665542 112221
Q ss_pred HhH----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCC-----CCCHH
Q 040367 181 VTY----TSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGV-----RPNAF 251 (400)
Q Consensus 181 ~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~ 251 (400)
..| .-.+-++...|++.++++.|+.+...+.+....+-..+.++|...+++++|..++..+..... .++..
T Consensus 289 ~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~ 368 (822)
T PRK14574 289 ADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLL 368 (822)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchH
Confidence 222 233457788899999999999999888666677888999999999999999999999877531 22333
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-----------CCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 040367 252 VYNTLMDGFCLTGRVNRAKELFVSMESMGC-----------THTV---FSYSILINGYCKNKEIEGALSLYGEMLSKGIK 317 (400)
Q Consensus 252 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 317 (400)
....|.-++...+++++|..+++.+.+... .||+ .....++..+...|++.+|++.++++.... +
T Consensus 369 ~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P 447 (822)
T PRK14574 369 DADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-P 447 (822)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 356788899999999999999999987421 1221 123456777888999999999999998764 4
Q ss_pred CchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Q 040367 318 PDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTLRIL 384 (400)
Q Consensus 318 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 384 (400)
-|......+...+...|.+.+|.+.++.+... -+-+..+....+.++...|++++|..+.+.+.+.
T Consensus 448 ~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l-~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 448 ANQNLRIALASIYLARDLPRKAEQELKAVESL-APRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 48888889999999999999999999777665 2335677778888889999999999999888763
No 22
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.86 E-value=5.4e-17 Score=151.63 Aligned_cols=117 Identities=10% Similarity=0.049 Sum_probs=66.1
Q ss_pred cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHH
Q 040367 263 TGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKL 342 (400)
Q Consensus 263 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 342 (400)
.|++++|...+++..+.. |+...+..+..++.+.|++++|...+++..+..+. +...+..+..++...|++++|+..
T Consensus 589 ~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~ 665 (987)
T PRK09782 589 PGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREM 665 (987)
T ss_pred CCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 355555555555555442 34555555555666666666666666666555322 444555555556666666666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 040367 343 FDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTLRI 383 (400)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 383 (400)
++++.+.. +.+...+..+..++...|++++|+..+++..+
T Consensus 666 l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 666 LERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 66665541 22455555666666666666666666666654
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.85 E-value=6.7e-16 Score=141.52 Aligned_cols=363 Identities=12% Similarity=0.021 Sum_probs=270.4
Q ss_pred hHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHH
Q 040367 19 SFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDL--YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKG 96 (400)
Q Consensus 19 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 96 (400)
+-..-+-...+.|+++.|++.|++..+.. |+. ..+ .++..+...|+.++|+..+++..... .........+...
T Consensus 36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~l 111 (822)
T PRK14574 36 TQYDSLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARA 111 (822)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHH
Confidence 33344446789999999999999999874 443 344 88888999999999999999998221 2233334444668
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCc----------ccchHHHHH
Q 040367 97 LCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGV----------EGFVDKAKE 166 (400)
Q Consensus 97 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~~a~~ 166 (400)
+...|++++|+++|+++.+.. +.++..+..++..+...++.++|++.++++....+.... .+...+|++
T Consensus 112 y~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~ 190 (822)
T PRK14574 112 YRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQ 190 (822)
T ss_pred HHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHH
Confidence 889999999999999999885 456788888899999999999999999999887765322 355556999
Q ss_pred HHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHH------------------------------------------
Q 040367 167 LFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLI------------------------------------------ 204 (400)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~------------------------------------------ 204 (400)
.++++.+.. |.+...+..+..+..+.|-...|.++..
T Consensus 191 ~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ 269 (822)
T PRK14574 191 ASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADK 269 (822)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHH
Confidence 999998875 4456666666666666665444443333
Q ss_pred ------HHHhC-CCCCCH-H----HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 040367 205 ------EMMDQ-GVQPNV-V----TFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKEL 272 (400)
Q Consensus 205 ------~~~~~-~~~~~~-~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 272 (400)
.+... +..|.. . ...-.+-++...|++.++++.++.+...+.+....+-..+.++|...+++++|..+
T Consensus 270 ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l 349 (822)
T PRK14574 270 ALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPI 349 (822)
T ss_pred HHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHH
Confidence 22221 111221 1 12234457778899999999999999887665667888999999999999999999
Q ss_pred HHHHHhcCC-----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------CCch---hhHHHHHHHHHhh
Q 040367 273 FVSMESMGC-----THTVFSYSILINGYCKNKEIEGALSLYGEMLSKGI-----------KPDV---VIYNTLFVVLFEI 333 (400)
Q Consensus 273 ~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~---~~~~~l~~~~~~~ 333 (400)
|+.+..... +++......|..++...+++++|..+++++.+..+ .||. .....++..+...
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~ 429 (822)
T PRK14574 350 LSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVAL 429 (822)
T ss_pred HHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHc
Confidence 999976431 22333357788999999999999999999987421 1222 1234456778889
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcccchh
Q 040367 334 HQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTLRILKCELDI 390 (400)
Q Consensus 334 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 390 (400)
|+..+|++.++++... -+-|......+.+.+...|.+.+|.+.++.... +.|+.
T Consensus 430 gdl~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~ 483 (822)
T PRK14574 430 NDLPTAQKKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRS 483 (822)
T ss_pred CCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCcc
Confidence 9999999999999876 355888999999999999999999999987775 35654
No 24
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.84 E-value=5e-16 Score=125.34 Aligned_cols=347 Identities=13% Similarity=0.168 Sum_probs=258.5
Q ss_pred CChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHH
Q 040367 15 PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLI 94 (400)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 94 (400)
.+..++..+|.++++--..++|.+++++......+.+..+||.+|.+-.-. ...+++.+|.+....||..|+|+++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHH
Confidence 478899999999999999999999999998887788999999999765433 2378899999999999999999999
Q ss_pred HHHHhcCCHHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHcCCCCCCcccchHHHHHHHH
Q 040367 95 KGLCAESRIME----AAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIV-ALNLFEEMASGNGEFGVEGFVDKAKELFL 169 (400)
Q Consensus 95 ~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 169 (400)
++..+.|+++. |.+++.+|++.|+.|...+|..+|..+.+.+++.+ |..++..+ ..
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI-------------------~N 341 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDI-------------------QN 341 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHH-------------------HH
Confidence 99999998865 56788899999999999999999999998888643 22233222 22
Q ss_pred HHHhCCC----CCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCC---HHHHHHHHHHHHhCCChHHHHHHH
Q 040367 170 QMKDENI----NPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQG----VQPN---VVTFNVIMDELCKNGKMDEASRLL 238 (400)
Q Consensus 170 ~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~ 238 (400)
.+....+ +.|..-|...+..|.+..+.+-|.++..-+.... +.|+ ..-|..+....++....+.....|
T Consensus 342 ~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y 421 (625)
T KOG4422|consen 342 SLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWY 421 (625)
T ss_pred hhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222 2345567778888999999998888876665321 2333 234667777888888999999999
Q ss_pred HHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC-CH--------HH-----H
Q 040367 239 DLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNK-EI--------EG-----A 304 (400)
Q Consensus 239 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~--------~~-----a 304 (400)
+.+.-.-.-|+..+...++++....|.++-..++|..+...|...+...-..++..+++.+ ++ .. |
T Consensus 422 ~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~a 501 (625)
T KOG4422|consen 422 EDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCA 501 (625)
T ss_pred HHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHH
Confidence 9998887788888999999999999999999999998888775555554444444444433 11 00 1
Q ss_pred HHHH-------HHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHHHhcCcHHH
Q 040367 305 LSLY-------GEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDG-V---AADTWTYRTFIDGLCKNSYIVE 373 (400)
Q Consensus 305 ~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~---~~~~~~~~~l~~~~~~~g~~~~ 373 (400)
..++ .++.+ ........+..+..+.+.|..++|.++|..+.+.+ - .|.......+++.-...++...
T Consensus 502 ad~~e~~e~~~~R~r~--~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsq 579 (625)
T KOG4422|consen 502 ADIKEAYESQPIRQRA--QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQ 579 (625)
T ss_pred HHHHHHHHhhHHHHHh--ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHH
Confidence 1111 12222 34456667788888899999999999999986553 2 2333444467777778899999
Q ss_pred HHHHHHHHHHhcc
Q 040367 374 AVELFRTLRILKC 386 (400)
Q Consensus 374 a~~~~~~~~~~~~ 386 (400)
|..+++-|...+.
T Consensus 580 A~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 580 AIEVLQLASAFNL 592 (625)
T ss_pred HHHHHHHHHHcCc
Confidence 9999999976654
No 25
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.83 E-value=1.3e-16 Score=140.95 Aligned_cols=389 Identities=12% Similarity=0.057 Sum_probs=257.0
Q ss_pred hhHHHHhcCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 040367 3 IFDYMLNMRPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLF--PDLYTYNILINCFCKMGRVSHGFVVLGRILR 80 (400)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 80 (400)
++......++. |+...+.|...+.-.|++..++++.+.+...... .-...|-.+.++|...|++++|...|....+
T Consensus 258 ll~~ay~~n~~--nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k 335 (1018)
T KOG2002|consen 258 LLQRAYKENNE--NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLK 335 (1018)
T ss_pred HHHHHHhhcCC--CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc
Confidence 34444455555 8888899999999999999999999888765311 1244688889999999999999999988877
Q ss_pred cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----ChHHHHHHHHHHHcCCCCCC
Q 040367 81 SCFTPNAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTG----HTIVALNLFEEMASGNGEFG 156 (400)
Q Consensus 81 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~ 156 (400)
....-....+--+.+.+.+.|+++.+...|+.+.... +-+..+...|...|...+ ..++|..++.+.....+...
T Consensus 336 ~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~ 414 (1018)
T KOG2002|consen 336 ADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDS 414 (1018)
T ss_pred cCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccH
Confidence 6422123445567788889999999988888887763 445556666666665553 33444444444433321111
Q ss_pred c-------------------------------------------------ccchHHHHHHHHHHHhC---CCCCCh----
Q 040367 157 V-------------------------------------------------EGFVDKAKELFLQMKDE---NINPDV---- 180 (400)
Q Consensus 157 ~-------------------------------------------------~~~~~~a~~~~~~~~~~---~~~~~~---- 180 (400)
. .|.++.|...|++.... ...++.
T Consensus 415 ~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~ 494 (1018)
T KOG2002|consen 415 EAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKST 494 (1018)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccc
Confidence 0 66777777777776544 112222
Q ss_pred --HhHHHHHHHHHhcCCHHHHHHHHHHHHhCC---------------------------------CCCCHHHHHHHHHHH
Q 040367 181 --VTYTSVIRGFCYANDWNEAKCLLIEMMDQG---------------------------------VQPNVVTFNVIMDEL 225 (400)
Q Consensus 181 --~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~ 225 (400)
.+-..+..+.-..++.+.|.+.|....+.. ...++..+..+...+
T Consensus 495 ~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~ 574 (1018)
T KOG2002|consen 495 NLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLH 574 (1018)
T ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHH
Confidence 122223344444555555555555554431 122333444444455
Q ss_pred HhCCChHHHHHHHHHHHHcC-CCCCHHhHHHHHHHHHhc------------CCHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 040367 226 CKNGKMDEASRLLDLMIQIG-VRPNAFVYNTLMDGFCLT------------GRVNRAKELFVSMESMGCTHTVFSYSILI 292 (400)
Q Consensus 226 ~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 292 (400)
.+...+..|.+-|..+.+.. ..+|+.+.-+|.+.|... +..++|+++|.++.+.. |.|...-+.+.
T Consensus 575 l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIg 653 (1018)
T KOG2002|consen 575 LKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIG 653 (1018)
T ss_pred HhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchh
Confidence 55555555555454444431 124555555666655432 34678888998888876 66888888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCcH
Q 040367 293 NGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRD-GVAADTWTYRTFIDGLCKNSYI 371 (400)
Q Consensus 293 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~ 371 (400)
-.++..|++.+|..+|.+..+... ....+|-.+..+|...|++..|+++|+...+. ....+..+...|.+++.+.|.+
T Consensus 654 iVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~ 732 (1018)
T KOG2002|consen 654 IVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKL 732 (1018)
T ss_pred hhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhH
Confidence 889999999999999999988743 25567888999999999999999999887765 3345788888999999999999
Q ss_pred HHHHHHHHHHHHhcccchhHHHHHH
Q 040367 372 VEAVELFRTLRILKCELDIRAYNCL 396 (400)
Q Consensus 372 ~~a~~~~~~~~~~~~~p~~~~~~~l 396 (400)
.+|.+.+...+.....-....||..
T Consensus 733 ~eak~~ll~a~~~~p~~~~v~FN~a 757 (1018)
T KOG2002|consen 733 QEAKEALLKARHLAPSNTSVKFNLA 757 (1018)
T ss_pred HHHHHHHHHHHHhCCccchHHhHHH
Confidence 9999988888865444344445543
No 26
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.82 E-value=4.3e-17 Score=132.58 Aligned_cols=366 Identities=14% Similarity=0.122 Sum_probs=218.8
Q ss_pred HHHhccCChhHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCChhhHHHHHHHHHhcCCCCC----hhhHHHHHHHHHh
Q 040367 25 GCLAKNKHYDTVLSLFKRLNSTGLFPDLYTY-NILINCFCKMGRVSHGFVVLGRILRSCFTPN----AVTFTSLIKGLCA 99 (400)
Q Consensus 25 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~ 99 (400)
.-|..+....+|+..|+-+.+....|+.-.. ..+.+.+.+..++.+|+.+|+..+..-+..+ ..+.+.+...+.+
T Consensus 209 qqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq 288 (840)
T KOG2003|consen 209 QQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQ 288 (840)
T ss_pred HHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEe
Confidence 3444455566666666666555545554332 2344555666666666666666554411111 1233334444556
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCc----------------------
Q 040367 100 ESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGV---------------------- 157 (400)
Q Consensus 100 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------------------- 157 (400)
.|+++.|+..|+...+. .|+..+-..|+-++...|+.++..+.|.++.......+.
T Consensus 289 ~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd 366 (840)
T KOG2003|consen 289 AGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKND 366 (840)
T ss_pred cccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhH
Confidence 66666666666666554 455555555555555666666666666666543322111
Q ss_pred -----------------------------------------------------------------ccchHHHHHHHHHHH
Q 040367 158 -----------------------------------------------------------------EGFVDKAKELFLQMK 172 (400)
Q Consensus 158 -----------------------------------------------------------------~~~~~~a~~~~~~~~ 172 (400)
.|+++.|+++++-+.
T Consensus 367 ~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~ 446 (840)
T KOG2003|consen 367 HLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFE 446 (840)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHH
Confidence 556666666665554
Q ss_pred hCCCCCChHhHHHHHH------------------------------------HHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 040367 173 DENINPDVVTYTSVIR------------------------------------GFCYANDWNEAKCLLIEMMDQGVQPNVV 216 (400)
Q Consensus 173 ~~~~~~~~~~~~~l~~------------------------------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 216 (400)
+..-+.-...-+.|-. .....|++++|.+.|++.+..+.. ...
T Consensus 447 ~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas-c~e 525 (840)
T KOG2003|consen 447 KKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS-CTE 525 (840)
T ss_pred hccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH-HHH
Confidence 4321111111111100 002235566666666665543211 111
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 040367 217 TFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYC 296 (400)
Q Consensus 217 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 296 (400)
....+.-.+...|++++|++.|-++... +..+..+...+...|....+..+|++++.+.... ++.|+...+.|...|-
T Consensus 526 alfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlyd 603 (840)
T KOG2003|consen 526 ALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYD 603 (840)
T ss_pred HHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhh
Confidence 1122222445566666666666555443 2235556666777777777777777777776654 3667888888888888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCcHHHHH
Q 040367 297 KNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLC-KNSYIVEAV 375 (400)
Q Consensus 297 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~ 375 (400)
+.|+-..|++.+-+-.+. ++-|..+...|...|....-+++++.+|+++.- +.|+..-|..++..|. +.|++++|+
T Consensus 604 qegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~ 680 (840)
T KOG2003|consen 604 QEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAF 680 (840)
T ss_pred cccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHH
Confidence 888888888877666554 556788888888888888888999999988754 6899999988776654 579999999
Q ss_pred HHHHHHHHhcccchhHHHHHHhhc
Q 040367 376 ELFRTLRILKCELDIRAYNCLIDG 399 (400)
Q Consensus 376 ~~~~~~~~~~~~p~~~~~~~ll~~ 399 (400)
++|+...+. ++-|..+..-|++-
T Consensus 681 d~yk~~hrk-fpedldclkflvri 703 (840)
T KOG2003|consen 681 DLYKDIHRK-FPEDLDCLKFLVRI 703 (840)
T ss_pred HHHHHHHHh-CccchHHHHHHHHH
Confidence 999988753 66677777766653
No 27
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.81 E-value=5.4e-15 Score=138.45 Aligned_cols=253 Identities=10% Similarity=-0.037 Sum_probs=190.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCC----------CcccchHHHHHHHHHHHhCCCCCChHhHHHHHHHH
Q 040367 121 NVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEF----------GVEGFVDKAKELFLQMKDENINPDVVTYTSVIRGF 190 (400)
Q Consensus 121 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 190 (400)
+...|..+..++.. +++++|+..+.+.....+.. ...|++++|...++++... +|+...+..+..++
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~al 552 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTA 552 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHH
Confidence 44555555555554 55555665555544433321 1145567777777766544 44445566777888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 040367 191 CYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAK 270 (400)
Q Consensus 191 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 270 (400)
.+.|++++|...+++..+.+ +.....+..+.......|++++|...+++..+. .|+...+..+..++.+.|++++|.
T Consensus 553 l~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~ 629 (987)
T PRK09782 553 QAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAV 629 (987)
T ss_pred HHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999998864 334444444444555679999999999999986 456888899999999999999999
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcC
Q 040367 271 ELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDG 350 (400)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 350 (400)
..+++..... +.+...+..+..++...|++++|++.+++..+..+ -+...+..+..++...|++++|+..+++..+.
T Consensus 630 ~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P-~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l- 706 (987)
T PRK09782 630 SDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP-DDPALIRQLAYVNQRLDDMAATQHYARLVIDD- 706 (987)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-
Confidence 9999999886 66788888999999999999999999999998753 36778899999999999999999999999986
Q ss_pred CCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 040367 351 VAAD-TWTYRTFIDGLCKNSYIVEAVELFRTLRI 383 (400)
Q Consensus 351 ~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 383 (400)
.|+ ..+.........+..+++.+.+-+++...
T Consensus 707 -~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 707 -IDNQALITPLTPEQNQQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred -CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 344 45555666667777778888887777665
No 28
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.79 E-value=1.3e-14 Score=127.63 Aligned_cols=360 Identities=12% Similarity=0.071 Sum_probs=278.0
Q ss_pred hHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 040367 19 SFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLC 98 (400)
Q Consensus 19 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 98 (400)
..-.....+.-.|+.++|..++.+..+.. +.+...|..|...|-..|+.+++...+-.+.-.+ +.|...|..+.....
T Consensus 141 ~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 141 QLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 33344445555699999999999999885 5578899999999999999999988776665443 457789999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCc----------------ccchH
Q 040367 99 AESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGV----------------EGFVD 162 (400)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~ 162 (400)
+.|.+..|.-+|.+.++.. +++...+-.-+..|-+.|+...|...|.++....+..+- .+..+
T Consensus 219 ~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e 297 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERE 297 (895)
T ss_pred hcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHH
Confidence 9999999999999999886 667777777888999999999999999999887772221 33347
Q ss_pred HHHHHHHHHHhC-CCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC---------------------------CCCC
Q 040367 163 KAKELFLQMKDE-NINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQG---------------------------VQPN 214 (400)
Q Consensus 163 ~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~~~ 214 (400)
.|.+.++..... +-..+...++.++..+.+..+++.|......+.... ..++
T Consensus 298 ~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~ 377 (895)
T KOG2076|consen 298 RAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYD 377 (895)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCcc
Confidence 777777776552 223456678899999999999999999888876521 1222
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcC--CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 040367 215 VVTFNVIMDELCKNGKMDEASRLLDLMIQIG--VRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILI 292 (400)
Q Consensus 215 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 292 (400)
..++ -++-++.+.+..+....+.....+.. +..+...|.-+..++...|.+.+|..+|..+.......+...|-.+.
T Consensus 378 l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a 456 (895)
T KOG2076|consen 378 LRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLA 456 (895)
T ss_pred chhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHH
Confidence 2231 22334555555566666666666655 33456788899999999999999999999999876666778999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHH--------HcCCCCCHHHHHHHHHH
Q 040367 293 NGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQ--------RDGVAADTWTYRTFIDG 364 (400)
Q Consensus 293 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~ 364 (400)
.+|...|.++.|.+.+...+... +.+...-..|...+-+.|+.++|.+.++.+. ..+..|+..........
T Consensus 457 ~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~ 535 (895)
T KOG2076|consen 457 RCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDI 535 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHH
Confidence 99999999999999999999864 2245555677788889999999999999854 23466677777778888
Q ss_pred HHhcCcHHHHHHHHHHHHH
Q 040367 365 LCKNSYIVEAVELFRTLRI 383 (400)
Q Consensus 365 ~~~~g~~~~a~~~~~~~~~ 383 (400)
+...|+.++-+.+..+|..
T Consensus 536 l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 536 LFQVGKREEFINTASTLVD 554 (895)
T ss_pred HHHhhhHHHHHHHHHHHHH
Confidence 8999999988777777764
No 29
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=2.1e-14 Score=116.13 Aligned_cols=310 Identities=14% Similarity=0.155 Sum_probs=209.2
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 040367 50 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLI 129 (400)
Q Consensus 50 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 129 (400)
-+..++..+|.++++.-..+.|.++|++......+.+..+||.+|.+-.-. .-.+++.+|....+.||..|+|+++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHH
Confidence 356677788888887777888888887777666677777888777653322 2266777777777788888888888
Q ss_pred HHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHH-HHHHHHHHHh
Q 040367 130 NGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNE-AKCLLIEMMD 208 (400)
Q Consensus 130 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~ 208 (400)
.+..+.|+++.|. ..|.+++.+|++.|+.|...+|..+|..+.+.++..+ |..++.+...
T Consensus 281 ~c~akfg~F~~ar-------------------~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N 341 (625)
T KOG4422|consen 281 SCAAKFGKFEDAR-------------------KAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQN 341 (625)
T ss_pred HHHHHhcchHHHH-------------------HHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHH
Confidence 8888888876663 4466777788888888888888888888887777644 4444444432
Q ss_pred ----CCC----CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC----CCCC---HHhHHHHHHHHHhcCCHHHHHHHH
Q 040367 209 ----QGV----QPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIG----VRPN---AFVYNTLMDGFCLTGRVNRAKELF 273 (400)
Q Consensus 209 ----~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~ 273 (400)
+.+ +.|...|...+..|.+..+.+.|.++..-..... +.|+ ..-|..+..+.++....+.-...|
T Consensus 342 ~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y 421 (625)
T KOG4422|consen 342 SLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWY 421 (625)
T ss_pred hhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 2345566777777778888887777766554321 1222 233455666677777788888888
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhC-cH-------------HHH
Q 040367 274 VSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIH-QV-------------ERA 339 (400)
Q Consensus 274 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~-------------~~a 339 (400)
+.|...-.-|+..+...++++....+.++-.-++|.+++..|...+...-.-++..+++.. +. +-|
T Consensus 422 ~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~a 501 (625)
T KOG4422|consen 422 EDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCA 501 (625)
T ss_pred HHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHH
Confidence 8888776678888888889988888999998899988888764444443333444443322 11 112
Q ss_pred HHHH-------HHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Q 040367 340 FKLF-------DEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTLRIL 384 (400)
Q Consensus 340 ~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 384 (400)
..++ .++.+..+ .....+.++..+.+.|+.++|.+++..+...
T Consensus 502 ad~~e~~e~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~ 551 (625)
T KOG4422|consen 502 ADIKEAYESQPIRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRK 551 (625)
T ss_pred HHHHHHHHhhHHHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhc
Confidence 2222 22333333 3445667777788999999999999999543
No 30
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=8.8e-14 Score=114.02 Aligned_cols=380 Identities=12% Similarity=0.121 Sum_probs=283.9
Q ss_pred chhHHHHhcCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 040367 2 CIFDYMLNMRPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRS 81 (400)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 81 (400)
++|++.+..+.. +...|-..+..-.+++++..|..++++....= |.-...|-..+..--..|+...|.++|++-...
T Consensus 94 Sv~ERALdvd~r--~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w 170 (677)
T KOG1915|consen 94 SVFERALDVDYR--NITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKYIYMEEMLGNIAGARQIFERWMEW 170 (677)
T ss_pred HHHHHHHhcccc--cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC
Confidence 467777776655 88888888888899999999999999888752 323345666666666788999999999988765
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCc----
Q 040367 82 CFTPNAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGV---- 157 (400)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---- 157 (400)
.|+...|++.|..-.+.+.++.|..+|++.+-. .|++.+|......-.++|+...|..+|+.....-.....
T Consensus 171 --~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~l 246 (677)
T KOG1915|consen 171 --EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEIL 246 (677)
T ss_pred --CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 789999999999888889999999999988765 588888888888888888888888888776543221100
Q ss_pred ----------------------------------------------cc---chHHHHH-----HHHHHHhCCCCCChHhH
Q 040367 158 ----------------------------------------------EG---FVDKAKE-----LFLQMKDENINPDVVTY 183 (400)
Q Consensus 158 ----------------------------------------------~~---~~~~a~~-----~~~~~~~~~~~~~~~~~ 183 (400)
.| .+++++- -++.....+ +.|-.+|
T Consensus 247 fvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsW 325 (677)
T KOG1915|consen 247 FVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSW 325 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHH
Confidence 11 1222211 122333332 5567788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHH---HhCCChHHHHHHHHHHHHcCCCCCHHhH
Q 040367 184 TSVIRGFCYANDWNEAKCLLIEMMDQGVQPNV-------VTFNVIMDEL---CKNGKMDEASRLLDLMIQIGVRPNAFVY 253 (400)
Q Consensus 184 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 253 (400)
--.++.-...|+.+...++|+.++.. ++|-. .+|..+--++ ....+.+.+.++++..++. ++....||
T Consensus 326 fdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtF 403 (677)
T KOG1915|consen 326 FDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTF 403 (677)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchH
Confidence 88888888889999999999999875 55532 1222222222 3467899999999999884 44455666
Q ss_pred HHHHHHH----HhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHH
Q 040367 254 NTLMDGF----CLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVV 329 (400)
Q Consensus 254 ~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 329 (400)
..+--.| .++.+...|.+++...... -|...+|...|..-.+.++++.+..++++.++-++. |..+|......
T Consensus 404 aKiWlmyA~feIRq~~l~~ARkiLG~AIG~--cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaEl 480 (677)
T KOG1915|consen 404 AKIWLMYAQFEIRQLNLTGARKILGNAIGK--CPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAEL 480 (677)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHhcc--CCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHH
Confidence 5544443 4678999999999988754 788889999999999999999999999999998644 78899999888
Q ss_pred HHhhCcHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcccchhHHHHHH
Q 040367 330 LFEIHQVERAFKLFDEMQRDG-VAADTWTYRTFIDGLCKNSYIVEAVELFRTLRILKCELDIRAYNCL 396 (400)
Q Consensus 330 ~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 396 (400)
-...|+.+.|..+|+-+++.. .......|.+.|+.-...|.+++|..+++++++. .+...+|.++
T Consensus 481 E~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisF 546 (677)
T KOG1915|consen 481 ETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISF 546 (677)
T ss_pred HHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhH
Confidence 889999999999999998752 2223556778888888999999999999999975 3444566554
No 31
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.77 E-value=9.2e-18 Score=138.26 Aligned_cols=161 Identities=16% Similarity=0.122 Sum_probs=58.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 040367 182 TYTSVIRGFCYANDWNEAKCLLIEMMDQG-VQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGF 260 (400)
Q Consensus 182 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 260 (400)
.+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|.+.+++.++.. +.+......++..+
T Consensus 112 ~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~l 190 (280)
T PF13429_consen 112 YLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLL 190 (280)
T ss_dssp ------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 33444444444445555444444443221 12333444444444444444444444444444432 11333444444444
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHH
Q 040367 261 CLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAF 340 (400)
Q Consensus 261 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 340 (400)
...|+.+++..++....+.. +.++..+..+..++...|++++|..++++..+.. +.|+.....+..++...|+.++|.
T Consensus 191 i~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~ 268 (280)
T PF13429_consen 191 IDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEAL 268 (280)
T ss_dssp CTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT---------
T ss_pred HHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccc
Confidence 44444444444444444332 3333444444444444444444444444444432 123444444444444444444444
Q ss_pred HHHHH
Q 040367 341 KLFDE 345 (400)
Q Consensus 341 ~~~~~ 345 (400)
++..+
T Consensus 269 ~~~~~ 273 (280)
T PF13429_consen 269 RLRRQ 273 (280)
T ss_dssp -----
T ss_pred ccccc
Confidence 44443
No 32
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.77 E-value=1.8e-14 Score=117.59 Aligned_cols=340 Identities=13% Similarity=0.122 Sum_probs=234.5
Q ss_pred hHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC------------C
Q 040367 19 SFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTP------------N 86 (400)
Q Consensus 19 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------------~ 86 (400)
..+.+...+.+.|+++.|+.-|+...+. .|+..+-..|+-++..-|+.++..+.|.+++.....+ +
T Consensus 278 il~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~ 355 (840)
T KOG2003|consen 278 ILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPD 355 (840)
T ss_pred HHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcc
Confidence 3455566778888888888888888776 4676665556666667788888888888887542211 1
Q ss_pred hhhHHHHH-----HHHHhcCC--HHHHHHHHHHHHHcCCCCCH---------------------HHHHHHHHHHHhcCCh
Q 040367 87 AVTFTSLI-----KGLCAESR--IMEAAALFTKLRVFGCEPNV---------------------FTYNTLINGLYRTGHT 138 (400)
Q Consensus 87 ~~~~~~l~-----~~~~~~~~--~~~a~~~~~~~~~~~~~~~~---------------------~~~~~l~~~~~~~~~~ 138 (400)
....+-.+ .-+-+.+. .++++-.-.++..--+.|+- ..-..-...+.+.|++
T Consensus 356 ~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~ 435 (840)
T KOG2003|consen 356 DNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDI 435 (840)
T ss_pred hHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCH
Confidence 11111111 11111111 11111111111100011110 0001112345566666
Q ss_pred HHHHHHHHHHHcCCCCC------------------------------------------------CcccchHHHHHHHHH
Q 040367 139 IVALNLFEEMASGNGEF------------------------------------------------GVEGFVDKAKELFLQ 170 (400)
Q Consensus 139 ~~a~~~~~~~~~~~~~~------------------------------------------------~~~~~~~~a~~~~~~ 170 (400)
+.|+++++-+.+.+... -..|++++|.+.+++
T Consensus 436 ~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~yke 515 (840)
T KOG2003|consen 436 EGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKE 515 (840)
T ss_pred HHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHH
Confidence 66666555554332211 118899999999999
Q ss_pred HHhCCCCCChHhHHHH---HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 040367 171 MKDENINPDVVTYTSV---IRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVR 247 (400)
Q Consensus 171 ~~~~~~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 247 (400)
..... ..+-.+| .-.+-..|+.++|++.|-++... +..+..+...+.+.|....+..+|++++.+.... ++
T Consensus 516 al~nd----asc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip 589 (840)
T KOG2003|consen 516 ALNND----ASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IP 589 (840)
T ss_pred HHcCc----hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CC
Confidence 88753 3333333 33567889999999999888654 3457778888899999999999999999988775 56
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHH
Q 040367 248 PNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLF 327 (400)
Q Consensus 248 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 327 (400)
.|+.+...|...|-+.|+-.+|.+.+-.--+. ++.+..+...|...|....-+++++.+|++..- +.|+..-|..++
T Consensus 590 ~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmi 666 (840)
T KOG2003|consen 590 NDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMI 666 (840)
T ss_pred CCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHH
Confidence 68999999999999999999999987766554 367889999999999999999999999998765 578999999887
Q ss_pred HH-HHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCc
Q 040367 328 VV-LFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSY 370 (400)
Q Consensus 328 ~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 370 (400)
.. +.+.|++.+|.++++...+. ++.|......|++.+...|-
T Consensus 667 asc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 667 ASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 55 55789999999999999886 77899999999999887774
No 33
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.76 E-value=1.1e-17 Score=137.82 Aligned_cols=262 Identities=15% Similarity=0.119 Sum_probs=116.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHH
Q 040367 92 SLIKGLCAESRIMEAAALFTKLRVFG-CEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQ 170 (400)
Q Consensus 92 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 170 (400)
.+...+...|++++|++++++..... .+.+...|..+.......++++.|...++++.
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~--------------------- 71 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLL--------------------- 71 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc---------------------
Confidence 45677778888888888885544332 13355555556666666777555555554443
Q ss_pred HHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC-CCCC
Q 040367 171 MKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIG-VRPN 249 (400)
Q Consensus 171 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~ 249 (400)
..+ +.+...+..++.. ...+++++|.+++....+.. +++..+..++..+.+.++++++..+++.+.... .+.+
T Consensus 72 --~~~-~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 145 (280)
T PF13429_consen 72 --ASD-KANPQDYERLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDS 145 (280)
T ss_dssp ----------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-
T ss_pred --ccc-ccccccccccccc-cccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCC
Confidence 332 2245566677766 78999999999998876653 566777888889999999999999999987642 3457
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHH
Q 040367 250 AFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVV 329 (400)
Q Consensus 250 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 329 (400)
...|..+...+.+.|+.++|...+++..+.. |.|......++..+...|+.+++.++++...+.. +.|+..+..+..+
T Consensus 146 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~ 223 (280)
T PF13429_consen 146 ARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAA 223 (280)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHH
Confidence 7888889999999999999999999999986 5568889999999999999999999988887763 4567778899999
Q ss_pred HHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 040367 330 LFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTLRI 383 (400)
Q Consensus 330 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 383 (400)
+...|++++|+.++++..+. .+.|+.+...+..++...|+.++|.++.+++.+
T Consensus 224 ~~~lg~~~~Al~~~~~~~~~-~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 224 YLQLGRYEEALEYLEKALKL-NPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHHT-----------------
T ss_pred hccccccccccccccccccc-ccccccccccccccccccccccccccccccccc
Confidence 99999999999999999886 345888999999999999999999999888753
No 34
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.76 E-value=1.9e-14 Score=124.64 Aligned_cols=289 Identities=10% Similarity=-0.010 Sum_probs=208.1
Q ss_pred HhcCChhhHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCChH
Q 040367 63 CKMGRVSHGFVVLGRILRSCFTPNA-VTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPNV--FTYNTLINGLYRTGHTI 139 (400)
Q Consensus 63 ~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~ 139 (400)
...|+++.|.+.+.+..+. .|+. ..+-....+....|+++.|.+.+.+..+.. |+. .........+...|+++
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHH
Confidence 3679999999999888776 3443 334455677888899999999999987653 443 34444577888888866
Q ss_pred HHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 040367 140 VALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFN 219 (400)
Q Consensus 140 ~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 219 (400)
.|...++.+ .+.. |-+...+..+...+...|++++|.+.+..+.+.++. +...+.
T Consensus 171 ~Al~~l~~l-----------------------~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~ 225 (409)
T TIGR00540 171 AARHGVDKL-----------------------LEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFA 225 (409)
T ss_pred HHHHHHHHH-----------------------HHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHH
Confidence 555555554 4443 446778889999999999999999999999988644 333332
Q ss_pred -HHHHHH---HhCCChHHHHHHHHHHHHcCC---CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhh---HH
Q 040367 220 -VIMDEL---CKNGKMDEASRLLDLMIQIGV---RPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFS---YS 289 (400)
Q Consensus 220 -~l~~~~---~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~ 289 (400)
.-..++ ...+..+++.+.+..+.+... +.++..+..++..+...|+.++|...+++..+.. |+... ..
T Consensus 226 ~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~ 303 (409)
T TIGR00540 226 DLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPL 303 (409)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHH
Confidence 111111 333333444445555555422 1378888899999999999999999999999874 33321 11
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCch--hhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 040367 290 ILINGYCKNKEIEGALSLYGEMLSKGIKPDV--VIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCK 367 (400)
Q Consensus 290 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 367 (400)
.........++.+.+.+.++...+.. +-|+ ....++.+.+.+.|++++|.+.|+........|+...+..+...+.+
T Consensus 304 l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~ 382 (409)
T TIGR00540 304 CLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQ 382 (409)
T ss_pred HHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHH
Confidence 12222334578888999998888763 2245 66778999999999999999999964444457899989999999999
Q ss_pred cCcHHHHHHHHHHHHH
Q 040367 368 NSYIVEAVELFRTLRI 383 (400)
Q Consensus 368 ~g~~~~a~~~~~~~~~ 383 (400)
.|+.++|.+++++...
T Consensus 383 ~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 383 AGDKAEAAAMRQDSLG 398 (409)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999999998753
No 35
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=2.1e-13 Score=111.48 Aligned_cols=366 Identities=11% Similarity=0.032 Sum_probs=250.9
Q ss_pred ChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhH--HHH
Q 040367 16 PVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTF--TSL 93 (400)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l 93 (400)
|...+......+.+.|..+.|++.|......- |-.-.+|..|...+.. +++....... .+.+.... -.+
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~lit~-------~e~~~~l~~~-l~~~~h~M~~~F~ 233 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELITD-------IEILSILVVG-LPSDMHWMKKFFL 233 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhhch-------HHHHHHHHhc-CcccchHHHHHHH
Confidence 44344444445566677777777777666541 2233334333333211 2222222211 11111111 123
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchH-----------
Q 040367 94 IKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVD----------- 162 (400)
Q Consensus 94 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------- 162 (400)
..++-...+.+++.+-.+.....|++.+...-+....+.....++++|+..|+++...++- .. ++.+
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPY-Rl-~dmdlySN~LYv~~~ 311 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPY-RL-DDMDLYSNVLYVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-cc-hhHHHHhHHHHHHhh
Confidence 3455566677777777777777777666666666667777778888888888888776331 11 1111
Q ss_pred -HHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 040367 163 -KAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLM 241 (400)
Q Consensus 163 -~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 241 (400)
..+..+.+-...--+--+.|+-.+.+.|+-.++.++|...|+..++.+ +.....|+.+..-|....+...|.+-++.+
T Consensus 312 ~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 312 KSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred hHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 111122211111012234577788888999999999999999999875 446678888999999999999999999999
Q ss_pred HHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchh
Q 040367 242 IQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVV 321 (400)
Q Consensus 242 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 321 (400)
++.. +.|-..|..|.++|.-.+.+.-|+-.|++..... |.|...|.+|..+|.+.++.++|++.|+.....|-. +..
T Consensus 391 vdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~ 467 (559)
T KOG1155|consen 391 VDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGS 467 (559)
T ss_pred HhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chH
Confidence 9874 4478899999999999999999999999999876 778999999999999999999999999999987633 667
Q ss_pred hHHHHHHHHHhhCcHHHHHHHHHHHHHc----CC-CC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcccchhHHHHH
Q 040367 322 IYNTLFVVLFEIHQVERAFKLFDEMQRD----GV-AA-DTWTYRTFIDGLCKNSYIVEAVELFRTLRILKCELDIRAYNC 395 (400)
Q Consensus 322 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 395 (400)
.+..+...+-+.++.++|...+++.++. |. .| ......-|..-+.+.+++++|.......... .+..+--++
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e~eeak~ 545 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETECEEAKA 545 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--CchHHHHHH
Confidence 8899999999999999999999887753 32 22 1223334666778889999998876666642 566666666
Q ss_pred Hhh
Q 040367 396 LID 398 (400)
Q Consensus 396 ll~ 398 (400)
|++
T Consensus 546 LlR 548 (559)
T KOG1155|consen 546 LLR 548 (559)
T ss_pred HHH
Confidence 654
No 36
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.76 E-value=2.5e-14 Score=123.27 Aligned_cols=290 Identities=14% Similarity=0.055 Sum_probs=181.8
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHH--HHHHHHHhcCCHHHH
Q 040367 30 NKHYDTVLSLFKRLNSTGLFPDLYTY-NILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFT--SLIKGLCAESRIMEA 106 (400)
Q Consensus 30 ~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a 106 (400)
.|+++.|.+.+....+.. +++..+ .....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 599999998888766542 233333 33345558899999999999999876 44543322 346788899999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCCChHhHHHH
Q 040367 107 AALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENINPDVVTYTSV 186 (400)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 186 (400)
.+.++++.+.. |-++..+..+...|.+.|++++|..++..+.+..... .++..++ ...+|..+
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~-----~~~~~~l-----------~~~a~~~l 235 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGD-----EEHRAML-----------EQQAWIGL 235 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCC-----HHHHHHH-----------HHHHHHHH
Confidence 99999998876 5578888999999999999776666666654432110 0000000 00122333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCH
Q 040367 187 IRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRV 266 (400)
Q Consensus 187 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 266 (400)
+.......+.+...++++.+.+. .+.++.....+...+...|+.++|.+++++..+. +++.... ++.+....++.
T Consensus 236 ~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~ 310 (398)
T PRK10747 236 MDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNP 310 (398)
T ss_pred HHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCCh
Confidence 33333344455555555554432 2445666666777777777777777777776663 3343221 22233344667
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHH
Q 040367 267 NRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEM 346 (400)
Q Consensus 267 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 346 (400)
+++....+...+.. +.|+..+..+...+.+.+++++|.+.|+.+.+. .|+...+..+...+.+.|+.++|.+++++.
T Consensus 311 ~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 311 EQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777776666554 445555666677777777777777777777664 456666666667777777777777776665
Q ss_pred HH
Q 040367 347 QR 348 (400)
Q Consensus 347 ~~ 348 (400)
..
T Consensus 388 l~ 389 (398)
T PRK10747 388 LM 389 (398)
T ss_pred Hh
Confidence 43
No 37
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.76 E-value=3.5e-14 Score=122.36 Aligned_cols=284 Identities=11% Similarity=0.047 Sum_probs=213.9
Q ss_pred hcCChhhHHHHHHHHHhcCCCCChhh-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCChHH
Q 040367 64 KMGRVSHGFVVLGRILRSCFTPNAVT-FTSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYN--TLINGLYRTGHTIV 140 (400)
Q Consensus 64 ~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~ 140 (400)
..|+++.|.+.+....+.. +++.. +........+.|+++.|.+.+.++.+. .|+..... .....+...|+++.
T Consensus 96 ~eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred hCCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHH
Confidence 3699999998888766542 22333 333345558899999999999999875 55554333 34667888888666
Q ss_pred HHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-----
Q 040367 141 ALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNV----- 215 (400)
Q Consensus 141 a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----- 215 (400)
|...+++. .+.. |-+......+...|.+.|++++|.+++..+.+.+..++.
T Consensus 172 Al~~l~~~-----------------------~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l 227 (398)
T PRK10747 172 ARHGVDKL-----------------------LEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAML 227 (398)
T ss_pred HHHHHHHH-----------------------HhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 66555554 4433 446778889999999999999999999999987644322
Q ss_pred --HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 040367 216 --VTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILIN 293 (400)
Q Consensus 216 --~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 293 (400)
.+|..++.......+.+...++++...+. .+.++.....+...+...|+.++|..++++..+. +++.... ++.
T Consensus 228 ~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~ 302 (398)
T PRK10747 228 EQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLI 302 (398)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHH
Confidence 12333344444445566666666665443 3457888889999999999999999999999874 5555322 334
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHH
Q 040367 294 GYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVE 373 (400)
Q Consensus 294 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 373 (400)
+....++.+++.+..+...+..+ -|...+..+.+.+.+.+++++|.+.|+.+.+. .|+...+..+...+.+.|+.++
T Consensus 303 ~~l~~~~~~~al~~~e~~lk~~P-~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~ 379 (398)
T PRK10747 303 PRLKTNNPEQLEKVLRQQIKQHG-DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEE 379 (398)
T ss_pred hhccCCChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHH
Confidence 44556999999999999988743 36777889999999999999999999999985 7899999999999999999999
Q ss_pred HHHHHHHHHH
Q 040367 374 AVELFRTLRI 383 (400)
Q Consensus 374 a~~~~~~~~~ 383 (400)
|.+++++-..
T Consensus 380 A~~~~~~~l~ 389 (398)
T PRK10747 380 AAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHh
Confidence 9999998864
No 38
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=2.2e-15 Score=128.31 Aligned_cols=290 Identities=11% Similarity=0.070 Sum_probs=222.2
Q ss_pred ChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChHHHHHH
Q 040367 67 RVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKLRVFG--CEPNVFTYNTLINGLYRTGHTIVALNL 144 (400)
Q Consensus 67 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~ 144 (400)
+.++|...|+.+... +.-+..+...+..+|.+.+++++|..+|+.+.+.. .--+..+|.+.+..+-+.
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~--------- 403 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE--------- 403 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh---------
Confidence 467778888875444 23344556667788888888888888888887663 112566777776654332
Q ss_pred HHHHHcCCCCCCcccchHHHHHHHH-HHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 040367 145 FEEMASGNGEFGVEGFVDKAKELFL-QMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMD 223 (400)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 223 (400)
-++..+. .+.+. -+..+.+|-++..+|.-.++.+.|++.|++.++.+ +-...+|+.+..
T Consensus 404 ------------------v~Ls~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGh 463 (638)
T KOG1126|consen 404 ------------------VALSYLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGH 463 (638)
T ss_pred ------------------HHHHHHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCC
Confidence 1122222 22222 24567899999999999999999999999999864 337788998888
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHH
Q 040367 224 ELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEG 303 (400)
Q Consensus 224 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 303 (400)
-+.....+|.|...|+..+....+ +-..|.-+...|.++++++.|+-.|+.+.+.+ +.+......+...+.+.|+.++
T Consensus 464 E~~~~ee~d~a~~~fr~Al~~~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~ 541 (638)
T KOG1126|consen 464 ESIATEEFDKAMKSFRKALGVDPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDK 541 (638)
T ss_pred hhhhhHHHHhHHHHHHhhhcCCch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhH
Confidence 889999999999999998764221 34455668889999999999999999999887 6677888888999999999999
Q ss_pred HHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 040367 304 ALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTLRI 383 (400)
Q Consensus 304 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 383 (400)
|+++++++...+.+ |+..--.-+..+...+++++|+..++++++. .+-+...+..+...|-+.|+.+.|+.-|.-+.+
T Consensus 542 AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 542 ALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 99999999987655 4444444566677789999999999999986 444678888999999999999999999999987
Q ss_pred hcccchh
Q 040367 384 LKCELDI 390 (400)
Q Consensus 384 ~~~~p~~ 390 (400)
...++..
T Consensus 620 ldpkg~~ 626 (638)
T KOG1126|consen 620 LDPKGAQ 626 (638)
T ss_pred CCCccch
Confidence 5544433
No 39
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.75 E-value=3.8e-14 Score=125.68 Aligned_cols=375 Identities=13% Similarity=0.096 Sum_probs=234.9
Q ss_pred hHHHHhcCCCCCChhhHHHHHHHHhccC----ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 040367 4 FDYMLNMRPSPPPVCSFNILFGCLAKNK----HYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 79 (400)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 79 (400)
|+.+.+..|. +..+...+...|...+ ..+.|..++.+..+.- +.|...|..+...+....-+. ++.+|..+.
T Consensus 365 fEkv~k~~p~--~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~-sL~~~~~A~ 440 (1018)
T KOG2002|consen 365 FEKVLKQLPN--NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWA-SLDAYGNAL 440 (1018)
T ss_pred HHHHHHhCcc--hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHH-HHHHHHHHH
Confidence 3444444443 4444444444443332 2333444444443332 234444444444443322222 244443332
Q ss_pred ----hcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCC------CCHHHHHHHHHHHHhcCChHHHHHHHH
Q 040367 80 ----RSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKLRVF---GCE------PNVFTYNTLINGLYRTGHTIVALNLFE 146 (400)
Q Consensus 80 ----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~ 146 (400)
..+-.+.+...|.+...+...|+++.|...|...... ... ++..+-..+....-..++++.|.+.|.
T Consensus 441 d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk 520 (1018)
T KOG2002|consen 441 DILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYK 520 (1018)
T ss_pred HHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 1222345555666666666666666666666655433 011 122233345555555566666666666
Q ss_pred HHHcCCCCCCc-----------ccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC
Q 040367 147 EMASGNGEFGV-----------EGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQG-VQPN 214 (400)
Q Consensus 147 ~~~~~~~~~~~-----------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~ 214 (400)
.+....+.|-. .+...+|...+......+ ..++..+..+...+.....+..|.+-|....+.- ..+|
T Consensus 521 ~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D 599 (1018)
T KOG2002|consen 521 SILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTD 599 (1018)
T ss_pred HHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCc
Confidence 66655544332 455667777777766553 4455667777778888888888888777665432 2357
Q ss_pred HHHHHHHHHHHHh------------CCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 040367 215 VVTFNVIMDELCK------------NGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCT 282 (400)
Q Consensus 215 ~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 282 (400)
+.+...|.+.|.+ .+..++|+++|.++++.. +.|...-+-+.-+++..|++..|..+|.++.+.. .
T Consensus 600 ~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~ 677 (1018)
T KOG2002|consen 600 AYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-S 677 (1018)
T ss_pred hhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH-h
Confidence 7666666665543 245778999999998874 4477778888889999999999999999999875 3
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 040367 283 HTVFSYSILINGYCKNKEIEGALSLYGEMLSK-GIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTF 361 (400)
Q Consensus 283 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 361 (400)
....+|-.+..+|..+|++..|+++|+...+. ....+..+...|.+++.+.|.+.+|.+.+..+....+......|+..
T Consensus 678 ~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a 757 (1018)
T KOG2002|consen 678 DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLA 757 (1018)
T ss_pred hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHH
Confidence 46677889999999999999999999977764 44557778899999999999999999999888876443334444433
Q ss_pred HHH------------------HHhcCcHHHHHHHHHHHHHhc
Q 040367 362 IDG------------------LCKNSYIVEAVELFRTLRILK 385 (400)
Q Consensus 362 ~~~------------------~~~~g~~~~a~~~~~~~~~~~ 385 (400)
+-. -...+..+.|.++|..|...+
T Consensus 758 ~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~ 799 (1018)
T KOG2002|consen 758 LVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNG 799 (1018)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 221 112245678888888887654
No 40
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.75 E-value=4.1e-14 Score=122.63 Aligned_cols=293 Identities=11% Similarity=-0.023 Sum_probs=207.4
Q ss_pred hccCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHH
Q 040367 28 AKNKHYDTVLSLFKRLNSTGLFPDL-YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEA 106 (400)
Q Consensus 28 ~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 106 (400)
...|+++.|.+.+.+..+.. |+. ..+-....+....|+++.|.+.+.+..+....+...........+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 45899999999999887763 443 344555678889999999999999998763232223444457888899999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCCChHhHH--
Q 040367 107 AALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENINPDVVTYT-- 184 (400)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-- 184 (400)
.+.++.+.+.+ |-+..++..+...+...|+++.|.+.+..+.+. +.. +...+.
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~-----------------------~~~-~~~~~~~l 227 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKA-----------------------GLF-DDEEFADL 227 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc-----------------------CCC-CHHHHHHH
Confidence 99999999886 557888999999999999977666666665443 221 222221
Q ss_pred --HHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhH-HHHHH
Q 040367 185 --SVIRGFCYANDWNEAKCLLIEMMDQG---VQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVY-NTLMD 258 (400)
Q Consensus 185 --~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~ 258 (400)
.........+..++..+.+..+.+.. .+.+...+..+...+...|+.++|.+++++..+.........+ .....
T Consensus 228 ~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~ 307 (409)
T TIGR00540 228 EQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPI 307 (409)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHh
Confidence 11111122333333344555554432 1237788888889999999999999999999986433221111 11112
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcH
Q 040367 259 GFCLTGRVNRAKELFVSMESMGCTHTV--FSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQV 336 (400)
Q Consensus 259 ~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 336 (400)
.....++.+.+.+.++...+.. +.|+ .....+...+.+.|++++|.+.|+........|+...+..+...+.+.|+.
T Consensus 308 ~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~ 386 (409)
T TIGR00540 308 PRLKPEDNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDK 386 (409)
T ss_pred hhcCCCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCH
Confidence 2234577888888888887764 4455 667788999999999999999999544444467888888999999999999
Q ss_pred HHHHHHHHHHHH
Q 040367 337 ERAFKLFDEMQR 348 (400)
Q Consensus 337 ~~a~~~~~~~~~ 348 (400)
++|.+++++...
T Consensus 387 ~~A~~~~~~~l~ 398 (409)
T TIGR00540 387 AEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHHHHH
Confidence 999999998654
No 41
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.74 E-value=2.2e-14 Score=111.73 Aligned_cols=300 Identities=15% Similarity=0.147 Sum_probs=220.0
Q ss_pred hHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCh------hhHHH
Q 040367 19 SFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNA------VTFTS 92 (400)
Q Consensus 19 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~ 92 (400)
.|-.-++. .-+.+.++|.++|-+|.+.. +.+.++..+|.+.|-+.|..+.|+++.+.+.++ ||. .....
T Consensus 38 ~Yv~GlNf-LLs~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~q 112 (389)
T COG2956 38 DYVKGLNF-LLSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQ 112 (389)
T ss_pred HHHhHHHH-HhhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHH
Confidence 34444443 33578999999999999864 446677889999999999999999999999875 333 24456
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHH
Q 040367 93 LIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMK 172 (400)
Q Consensus 93 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 172 (400)
|.+-|...|-+|.|+++|..+.+.+ .--......|+..|-...++++|+++-+++...++...
T Consensus 113 L~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~---------------- 175 (389)
T COG2956 113 LGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTY---------------- 175 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccc----------------
Confidence 7778899999999999999999865 45677888999999999998777777666554332210
Q ss_pred hCCCCCC-hHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH
Q 040367 173 DENINPD-VVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAF 251 (400)
Q Consensus 173 ~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 251 (400)
... ...|--+...+....+++.|..++.+..+.+ +..+..-..+.+.....|+++.|.+.++.+.+.+..--+.
T Consensus 176 ----~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~e 250 (389)
T COG2956 176 ----RVEIAQFYCELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSE 250 (389)
T ss_pred ----hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHH
Confidence 111 1234455566667788999999999988764 3344444556678888999999999999999887666677
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHH
Q 040367 252 VYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLF 331 (400)
Q Consensus 252 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 331 (400)
+...|..+|...|+.++....+..+.+.. +....-..+...-....-.+.|...+.+-++. +|+...+..++....
T Consensus 251 vl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l 326 (389)
T COG2956 251 VLEMLYECYAQLGKPAEGLNFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHL 326 (389)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhh
Confidence 78888999999999999999999888764 44444455555555555666777666555554 578888888887664
Q ss_pred h---hCcHHHHHHHHHHHHHc
Q 040367 332 E---IHQVERAFKLFDEMQRD 349 (400)
Q Consensus 332 ~---~~~~~~a~~~~~~~~~~ 349 (400)
. .|...+...+++.|...
T Consensus 327 ~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 327 ADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred ccccccchhhhHHHHHHHHHH
Confidence 3 44566777777777754
No 42
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.72 E-value=9.7e-14 Score=108.23 Aligned_cols=287 Identities=13% Similarity=0.109 Sum_probs=212.1
Q ss_pred cCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHhcCCh
Q 040367 65 MGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPNV------FTYNTLINGLYRTGHT 138 (400)
Q Consensus 65 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~ 138 (400)
.++.++|.+.|-+|.+.+ +.+..+--.|.+.|.+.|..+.|+.+.+.+.++ ||. .....|..-|...|-
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl- 122 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGL- 122 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhh-
Confidence 567888888888888753 335556667888888889999999988888764 332 233445555566665
Q ss_pred HHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---
Q 040367 139 IVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNV--- 215 (400)
Q Consensus 139 ~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--- 215 (400)
+++|..+|..+.+.+ .--......|+..|-...+|++|+++-+++.+.+..+..
T Consensus 123 ----------------------~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eI 179 (389)
T COG2956 123 ----------------------LDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEI 179 (389)
T ss_pred ----------------------hhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHH
Confidence 556666666666543 223457788999999999999999999999887644432
Q ss_pred -HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 040367 216 -VTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILING 294 (400)
Q Consensus 216 -~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 294 (400)
..|.-+...+....+.+.|...+.+..+.+.+ .+..--.+.+.....|+++.|.+.++.+.+.+..--+.+...|..+
T Consensus 180 AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~ 258 (389)
T COG2956 180 AQFYCELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYEC 258 (389)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 24555666667788999999999999987433 3444446788899999999999999999988755566778899999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CcH
Q 040367 295 YCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKN---SYI 371 (400)
Q Consensus 295 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~ 371 (400)
|.+.|+.++...++..+.+... +...-..+...-....-.+.|...+.+-+.. .|+...+..++..-... |..
T Consensus 259 Y~~lg~~~~~~~fL~~~~~~~~--g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~ 334 (389)
T COG2956 259 YAQLGKPAEGLNFLRRAMETNT--GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRA 334 (389)
T ss_pred HHHhCCHHHHHHHHHHHHHccC--CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccch
Confidence 9999999999999999998643 3333455555555556667777777666654 68999999999876543 567
Q ss_pred HHHHHHHHHHHHh
Q 040367 372 VEAVELFRTLRIL 384 (400)
Q Consensus 372 ~~a~~~~~~~~~~ 384 (400)
.+.+..++.|...
T Consensus 335 k~sL~~lr~mvge 347 (389)
T COG2956 335 KESLDLLRDMVGE 347 (389)
T ss_pred hhhHHHHHHHHHH
Confidence 7778888888643
No 43
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=1.7e-14 Score=122.94 Aligned_cols=289 Identities=11% Similarity=0.037 Sum_probs=213.2
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC--CCChhhHHHHHHHHHhcCCHHHHHH
Q 040367 31 KHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCF--TPNAVTFTSLIKGLCAESRIMEAAA 108 (400)
Q Consensus 31 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~ 108 (400)
=+..+|+..|+..... +..+......+..+|...+++++|.++|+.+.+... .-+.++|...+-.+-+ .-+---
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~---~v~Ls~ 408 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD---EVALSY 408 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh---hHHHHH
Confidence 3578899999996555 344567778899999999999999999999987632 1255667666654322 222222
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCCChHhHHHHHH
Q 040367 109 LFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENINPDVVTYTSVIR 188 (400)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 188 (400)
+-+.+.+.. +-.+.+|..+..+|.-+++.+.|++.|++..+.+ +....+|+.+..
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld------------------------p~faYayTLlGh 463 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD------------------------PRFAYAYTLLGH 463 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC------------------------CccchhhhhcCC
Confidence 233334333 5678999999999999999877777777765543 225677888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHH
Q 040367 189 GFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNR 268 (400)
Q Consensus 189 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 268 (400)
-+.....+|.|...|+..+..+ +-+-..|.-+...|.+.++++.|+-.|+++.+.+.. +......+...+.+.|+.++
T Consensus 464 E~~~~ee~d~a~~~fr~Al~~~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~ 541 (638)
T KOG1126|consen 464 ESIATEEFDKAMKSFRKALGVD-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDK 541 (638)
T ss_pred hhhhhHHHHhHHHHHHhhhcCC-chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhH
Confidence 8888888999999998887542 122334445566788899999999999998886533 56667778888888899999
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHH
Q 040367 269 AKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQR 348 (400)
Q Consensus 269 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 348 (400)
|+.+++++...+ +.|+..--.-+..+...+++++|+..++++++. ++.+...+..+.+.|.+.|+.+.|+.-|--+.+
T Consensus 542 AL~~~~~A~~ld-~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 542 ALQLYEKAIHLD-PKNPLCKYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHHHHHHhcC-CCCchhHHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 999999988776 445555556666777888999999999998886 344566777888899999999999988888887
Q ss_pred cCCC
Q 040367 349 DGVA 352 (400)
Q Consensus 349 ~~~~ 352 (400)
...+
T Consensus 620 ldpk 623 (638)
T KOG1126|consen 620 LDPK 623 (638)
T ss_pred CCCc
Confidence 6433
No 44
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.71 E-value=2.5e-12 Score=109.73 Aligned_cols=361 Identities=10% Similarity=0.013 Sum_probs=203.8
Q ss_pred CChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHH
Q 040367 15 PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFP--DLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTS 92 (400)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 92 (400)
-+...|-.=...|-..|..-.+..+.......|+.. -..+|..-.+.|.+.+.++-|..+|...++.. +-+...|..
T Consensus 477 i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlr 555 (913)
T KOG0495|consen 477 INRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLR 555 (913)
T ss_pred ecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHH
Confidence 455555555555555555555555555555544432 12345555555556666666666665555542 234445555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCc-----------ccch
Q 040367 93 LIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGV-----------EGFV 161 (400)
Q Consensus 93 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----------~~~~ 161 (400)
.+..--..|..++...++++....- +.....|......+...|+...|..++..+.+..+.... ...+
T Consensus 556 a~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~ 634 (913)
T KOG0495|consen 556 AAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDEL 634 (913)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccH
Confidence 5554445555555555555555441 233444445555555555555555555555544433111 4445
Q ss_pred HHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 040367 162 DKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLM 241 (400)
Q Consensus 162 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 241 (400)
++|..+|.+.... .|+...|.--+..---.++.++|++++++.++. ++.-...|..+.+.+-+.++.+.|...|..-
T Consensus 635 eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G 711 (913)
T KOG0495|consen 635 ERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQG 711 (913)
T ss_pred HHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 5555555555543 344555555555455555666666666655553 2222334555555555566666666555554
Q ss_pred HHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC------
Q 040367 242 IQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKG------ 315 (400)
Q Consensus 242 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------ 315 (400)
.+. ++-....|-.|...-.+.|.+-+|..++++..-.+ +.+...|-..+++-.+.|+.+.|..+..++++.-
T Consensus 712 ~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~L 789 (913)
T KOG0495|consen 712 TKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLL 789 (913)
T ss_pred ccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchh
Confidence 443 23334445555555555556666666666555544 4455556566666666666665555554444320
Q ss_pred -----------------------CCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHH
Q 040367 316 -----------------------IKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIV 372 (400)
Q Consensus 316 -----------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 372 (400)
..-|+.....+...+....+++.|.++|++..+.+ +.+-.+|..+...+..+|.-+
T Consensus 790 WaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~ee 868 (913)
T KOG0495|consen 790 WAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEE 868 (913)
T ss_pred HHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHH
Confidence 12245555667777778888999999999998863 335778888888888999888
Q ss_pred HHHHHHHHHHH
Q 040367 373 EAVELFRTLRI 383 (400)
Q Consensus 373 ~a~~~~~~~~~ 383 (400)
+-.+++.....
T Consensus 869 d~kev~~~c~~ 879 (913)
T KOG0495|consen 869 DQKEVLKKCET 879 (913)
T ss_pred HHHHHHHHHhc
Confidence 88888887764
No 45
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.70 E-value=5.1e-13 Score=117.81 Aligned_cols=322 Identities=14% Similarity=0.087 Sum_probs=249.7
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 040367 57 ILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTG 136 (400)
Q Consensus 57 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 136 (400)
...+.....|++++|.+++.++++.. +.+...|..|...|-..|+.+++...+-..-..+ +-|...|..+.....+.|
T Consensus 144 ~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~ 221 (895)
T KOG2076|consen 144 GEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLG 221 (895)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcc
Confidence 33444556699999999999999986 4578899999999999999999998876665554 557899999999999999
Q ss_pred ChHHHHHHHHHHHcCCCCCCc-----------ccchHHHHHHHHHHHhCCCCCChHhHH----HHHHHHHhcCCHHHHHH
Q 040367 137 HTIVALNLFEEMASGNGEFGV-----------EGFVDKAKELFLQMKDENINPDVVTYT----SVIRGFCYANDWNEAKC 201 (400)
Q Consensus 137 ~~~~a~~~~~~~~~~~~~~~~-----------~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~a~~ 201 (400)
+++.|.-+|.++++..+.... .|....|..-|.++.....+.|..-+. .++..+...++-+.|.+
T Consensus 222 ~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 222 NINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999999999999988776433 789999999999998875433433333 34556777888899999
Q ss_pred HHHHHHhC-CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC---------------------------CCCCHHhH
Q 040367 202 LLIEMMDQ-GVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIG---------------------------VRPNAFVY 253 (400)
Q Consensus 202 ~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~~~~~~~ 253 (400)
.++..... +-..+...++.++..+.+...++.+........... ..++..++
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~ 381 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI 381 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH
Confidence 99888763 234455678888889999999999988887776621 11222221
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHH
Q 040367 254 NTLMDGFCLTGRVNRAKELFVSMESMG--CTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLF 331 (400)
Q Consensus 254 ~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 331 (400)
.++-++......+....+...+...+ +.-+...|.-+..++...|++.+|+.++..+......-+...|-.+..+|.
T Consensus 382 -rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 382 -RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred -hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 22333444555555555555555554 333566788999999999999999999999998755557789999999999
Q ss_pred hhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 040367 332 EIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTLR 382 (400)
Q Consensus 332 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 382 (400)
..|.++.|.+.++..+.. -+.+...-.+|...+.+.|+.++|.+.++.+.
T Consensus 461 ~l~e~e~A~e~y~kvl~~-~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLIL-APDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHhhHHHHHHHHHHHHhc-CCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 999999999999999986 23456677788889999999999999999876
No 46
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=4.4e-13 Score=110.34 Aligned_cols=354 Identities=14% Similarity=0.104 Sum_probs=240.5
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC-hhhHHHHHHHH
Q 040367 20 FNILFGCLAKNKHYDTVLSLFKRLNSTGLFPD-LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPN-AVTFTSLIKGL 97 (400)
Q Consensus 20 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~ 97 (400)
+-...+-+.++|.+++|++.|.+..+. .|+ +..|.....+|...|+|++..+.-...++.+ |+ +..+..-.+++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHH
Confidence 445567788999999999999999987 567 8889999999999999999999888887763 33 33444445566
Q ss_pred HhcCCHHHHHHHH----------------------HH---------HHHcC--CCCCHHHHHHHHHHHHhc--------C
Q 040367 98 CAESRIMEAAALF----------------------TK---------LRVFG--CEPNVFTYNTLINGLYRT--------G 136 (400)
Q Consensus 98 ~~~~~~~~a~~~~----------------------~~---------~~~~~--~~~~~~~~~~l~~~~~~~--------~ 136 (400)
-..|++++|+.-. .+ +...+ +-|+.....+....+... +
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~ 273 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKS 273 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCC
Confidence 6666666654321 11 11111 223443333333322110 0
Q ss_pred C-----hHHHHHHHHHH---------------HcC------------------------CCCCCcccchHHHHHHHHHHH
Q 040367 137 H-----TIVALNLFEEM---------------ASG------------------------NGEFGVEGFVDKAKELFLQMK 172 (400)
Q Consensus 137 ~-----~~~a~~~~~~~---------------~~~------------------------~~~~~~~~~~~~a~~~~~~~~ 172 (400)
+ ..++.+.+... ... +...-..|+.-.+..-|+..+
T Consensus 274 ~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I 353 (606)
T KOG0547|consen 274 DKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAI 353 (606)
T ss_pred ccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHH
Confidence 1 11111111111 000 000011666777777788777
Q ss_pred hCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHh
Q 040367 173 DENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFV 252 (400)
Q Consensus 173 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 252 (400)
.....++ ..|--+..+|....+.++.+..|++..+.+ +-++.+|..-.....-.+++++|..=|++.+... +.+...
T Consensus 354 ~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~ 430 (606)
T KOG0547|consen 354 KLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYA 430 (606)
T ss_pred hcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHH
Confidence 7653332 337677778889999999999999988875 4466777777777788889999999999988863 225566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----Cchh--hHHH
Q 040367 253 YNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIK-----PDVV--IYNT 325 (400)
Q Consensus 253 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~--~~~~ 325 (400)
|-.+..+..+.+.+++++..|++..+.- |.-+..|+.....+...++++.|.+.|+..++.... .+.. +.-.
T Consensus 431 ~iQl~~a~Yr~~k~~~~m~~Fee~kkkF-P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka 509 (606)
T KOG0547|consen 431 YIQLCCALYRQHKIAESMKTFEEAKKKF-PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKA 509 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhh
Confidence 6677777778899999999999988763 556788999999999999999999999998875322 1111 1122
Q ss_pred HHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 040367 326 LFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTLRI 383 (400)
Q Consensus 326 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 383 (400)
++..- -.+++..|..+++++.+... -....|..|...-.+.|+.++|+++|++...
T Consensus 510 ~l~~q-wk~d~~~a~~Ll~KA~e~Dp-kce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 510 LLVLQ-WKEDINQAENLLRKAIELDP-KCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred Hhhhc-hhhhHHHHHHHHHHHHccCc-hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 22211 24889999999999988632 2466788899999999999999999998764
No 47
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.70 E-value=1.3e-12 Score=104.98 Aligned_cols=294 Identities=12% Similarity=0.031 Sum_probs=208.9
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 040367 30 NKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAAL 109 (400)
Q Consensus 30 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 109 (400)
.|+|.+|..+..+-.+.+ +.....|..-..+.-+.|+.+.+-..+.++.+....++....-...+.....|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 689999999999987776 3234456666778888999999999999998874456667777788888899999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCCChHhHHHHHHH
Q 040367 110 FTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENINPDVVTYTSVIRG 189 (400)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 189 (400)
++++.+.+ +..+........+|.+.|++.....++.++.+.+.-.+ +++.+ ....+|..++.-
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~-----~e~~~-----------le~~a~~glL~q 238 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSD-----EEAAR-----------LEQQAWEGLLQQ 238 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCCh-----HHHHH-----------HHHHHHHHHHHH
Confidence 99998886 66788889999999999997666666666654432210 01110 123466677776
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHH
Q 040367 190 FCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRA 269 (400)
Q Consensus 190 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 269 (400)
....+..+.-...|+....+ .+.++..-..++.-+.++|+.++|.++..+..+++..|+ . ...-.+.+-++...-
T Consensus 239 ~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L-~~~~~~l~~~d~~~l 313 (400)
T COG3071 239 ARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---L-CRLIPRLRPGDPEPL 313 (400)
T ss_pred HhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---H-HHHHhhcCCCCchHH
Confidence 66666666666666665543 345566667777778888888888888888888766555 1 112234456666666
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHc
Q 040367 270 KELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRD 349 (400)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 349 (400)
.+..+.-.+.. +.++..+..|...|.+.+.|.+|.+.|+...+. .|+..+|+.+..++.+.|+..+|.++.++....
T Consensus 314 ~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 314 IKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 66666555443 445577778888888888888888888876664 567778888888888888888888887776643
No 48
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.68 E-value=3.3e-12 Score=102.78 Aligned_cols=293 Identities=10% Similarity=0.055 Sum_probs=222.0
Q ss_pred hcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 040367 64 KMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALN 143 (400)
Q Consensus 64 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 143 (400)
..|+|.+|++...+..+.+.. ....|..-+.+--..|+.+.+-.++.+..+..-.++....-+........|+.+.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 358889998888887776533 3445556667777888899999888888876324566666777777788888555544
Q ss_pred HHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------H
Q 040367 144 LFEEMASGNGEFGVEGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNV-------V 216 (400)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~ 216 (400)
-+. ++.+.+ +-++........+|.+.|++.....++.++.+.+.-.+. .
T Consensus 175 ~v~-----------------------~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~ 230 (400)
T COG3071 175 NVD-----------------------QLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQ 230 (400)
T ss_pred HHH-----------------------HHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHH
Confidence 444 444443 446778889999999999999999999999998865554 3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 040367 217 TFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYC 296 (400)
Q Consensus 217 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 296 (400)
+|..+++-....+..+.-...++..... .+.++..-.+++.-+..+|+.++|.++..+..+....|+ ... .-.+.
T Consensus 231 a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~-~~~~l 305 (400)
T COG3071 231 AWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCR-LIPRL 305 (400)
T ss_pred HHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHH-HHhhc
Confidence 5677777666666666666677666544 455677778889999999999999999999998865554 222 22456
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHH
Q 040367 297 KNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVE 376 (400)
Q Consensus 297 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 376 (400)
+-++.+.-.+..++-.+.. +.++..+.+|...|.+.+.+.+|.+.|+...+. .|+..+|+.+..++.+.|+..+|.+
T Consensus 306 ~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~ 382 (400)
T COG3071 306 RPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQ 382 (400)
T ss_pred CCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHH
Confidence 7778888777777665542 335578899999999999999999999988875 7899999999999999999999999
Q ss_pred HHHHHHHhcccch
Q 040367 377 LFRTLRILKCELD 389 (400)
Q Consensus 377 ~~~~~~~~~~~p~ 389 (400)
..++....-.+|+
T Consensus 383 ~r~e~L~~~~~~~ 395 (400)
T COG3071 383 VRREALLLTRQPN 395 (400)
T ss_pred HHHHHHHHhcCCC
Confidence 9998874433443
No 49
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=1.5e-12 Score=106.63 Aligned_cols=299 Identities=12% Similarity=0.077 Sum_probs=213.9
Q ss_pred HHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcC
Q 040367 59 INCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKLRVFGC--EPNVFTYNTLINGLYRTG 136 (400)
Q Consensus 59 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~ 136 (400)
..++....+.+++.+-.+.....|++-+...-+....+.-...+++.|+.+|+++.+... -.|..+|..++-.--...
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence 345555567777777777777777665555555555666677788888888888877631 015566666554332221
Q ss_pred ChHHHHHHHHHHHcCCC------------CCCcccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHH
Q 040367 137 HTIVALNLFEEMASGNG------------EFGVEGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLI 204 (400)
Q Consensus 137 ~~~~a~~~~~~~~~~~~------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 204 (400)
. +.++.+-..... -++..+..++|+..|++..+.+ |.....|+.+..-|...++...|++-++
T Consensus 314 k----Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 314 K----LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred H----HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 1 112222111111 1222566788888888888775 4467789999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 040367 205 EMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHT 284 (400)
Q Consensus 205 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 284 (400)
.+++.. +.|-..|..+.++|.-.+.+.=|+-.|+++.+.. +.|...+.+|..+|.+.++.++|+..|......+ ..+
T Consensus 389 rAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte 465 (559)
T KOG1155|consen 389 RAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTE 465 (559)
T ss_pred HHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccc
Confidence 999874 6688999999999999999999999999999863 4578999999999999999999999999999877 456
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCc--hhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHH
Q 040367 285 VFSYSILINGYCKNKEIEGALSLYGEMLSK----GIKPD--VVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTY 358 (400)
Q Consensus 285 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 358 (400)
...+..|.+.|.+.++.++|...+.+.++. |...+ ......|...+.+.+++++|..........
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--------- 536 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--------- 536 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC---------
Confidence 788999999999999999999999887762 32212 222233455666777777776655444332
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHH
Q 040367 359 RTFIDGLCKNSYIVEAVELFRTLRI 383 (400)
Q Consensus 359 ~~l~~~~~~~g~~~~a~~~~~~~~~ 383 (400)
.-..++|..++++++.
T Consensus 537 ---------~~e~eeak~LlReir~ 552 (559)
T KOG1155|consen 537 ---------ETECEEAKALLREIRK 552 (559)
T ss_pred ---------CchHHHHHHHHHHHHH
Confidence 2234666666666664
No 50
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.67 E-value=1.8e-11 Score=104.69 Aligned_cols=373 Identities=12% Similarity=0.028 Sum_probs=310.7
Q ss_pred hhHHHHhcCCCCCChhhHHHHHHHHhccCChhHHHHHHHHH----HhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 040367 3 IFDYMLNMRPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRL----NSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 78 (400)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 78 (400)
+++...+.-|. +...|-.-...--.+|+.+....++.+- ...|+.-+..-|..=...|-..|..-.+..+....
T Consensus 428 vLNkaRe~ipt--d~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~av 505 (913)
T KOG0495|consen 428 VLNKAREIIPT--DREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAV 505 (913)
T ss_pred HHHHHHhhCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHH
Confidence 45666666665 8889988888889999999999988864 45688889999999999999999999999999999
Q ss_pred HhcCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCC
Q 040367 79 LRSCFTP--NAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFG 156 (400)
Q Consensus 79 ~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 156 (400)
+..|+.- -..+|+.-.+.|.+.+.++-|..+|...++.- +.+...|......--..|..+.-..+|+++...-+...
T Consensus 506 igigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae 584 (913)
T KOG0495|consen 506 IGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAE 584 (913)
T ss_pred HhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcch
Confidence 8887653 35688999999999999999999999988763 55788898888888889999999999999987765432
Q ss_pred c-----------ccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 040367 157 V-----------EGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDEL 225 (400)
Q Consensus 157 ~-----------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 225 (400)
. .|+...|..++.+..+.. +.+...|.+-+..-....+++.|..+|.+.... .|+...|.--+..-
T Consensus 585 ~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~e 661 (913)
T KOG0495|consen 585 ILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLE 661 (913)
T ss_pred hHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHH
Confidence 2 789999999999998875 447888999999999999999999999998874 57888887777777
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 040367 226 CKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGAL 305 (400)
Q Consensus 226 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 305 (400)
--.+..++|.+++++.++. ++.-...|..+...+.+.++.+.|...|..-.+.- +...-.|-.|...-.+.|.+-+|.
T Consensus 662 r~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c-P~~ipLWllLakleEk~~~~~rAR 739 (913)
T KOG0495|consen 662 RYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC-PNSIPLWLLLAKLEEKDGQLVRAR 739 (913)
T ss_pred HHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccC-CCCchHHHHHHHHHHHhcchhhHH
Confidence 7789999999999999986 44446788889999999999999999998877653 555667888888888889999999
Q ss_pred HHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHc-----------------------------CCCCCHH
Q 040367 306 SLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRD-----------------------------GVAADTW 356 (400)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----------------------------~~~~~~~ 356 (400)
.++++..-.+++ +...|-..++.-.+.|+.+.|..+..++++. ...-|+.
T Consensus 740 ~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dph 818 (913)
T KOG0495|consen 740 SILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPH 818 (913)
T ss_pred HHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCch
Confidence 999999988755 7888999999999999999998888776542 1223444
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHh
Q 040367 357 TYRTFIDGLCKNSYIVEAVELFRTLRIL 384 (400)
Q Consensus 357 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 384 (400)
+.-.+...|....++++|.+.|.+..+.
T Consensus 819 Vllaia~lfw~e~k~~kar~Wf~Ravk~ 846 (913)
T KOG0495|consen 819 VLLAIAKLFWSEKKIEKAREWFERAVKK 846 (913)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 5556677788888999999999999874
No 51
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=1.8e-11 Score=100.77 Aligned_cols=359 Identities=12% Similarity=0.128 Sum_probs=249.7
Q ss_pred ChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHH
Q 040367 16 PVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIK 95 (400)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 95 (400)
+...|-.....-..++++..|.++|++++... ..+...|...+..-.+.+....|..++++.+..-+..| ..|-..+.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHH
Confidence 44445555555566788999999999999876 34777888889999999999999999999987633322 24444555
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCc----------ccchHHHH
Q 040367 96 GLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGV----------EGFVDKAK 165 (400)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~~a~ 165 (400)
+--..|++..|.++|++-.+. .|+...|++.+..-.+-...+.|..++++..-.-+.... .|....+.
T Consensus 150 mEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHH
Confidence 556689999999999999877 899999999999999999999999999998776554332 67777788
Q ss_pred HHHHHHHhCCC--CCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----------------------------------
Q 040367 166 ELFLQMKDENI--NPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQ---------------------------------- 209 (400)
Q Consensus 166 ~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------------------------- 209 (400)
.+|....+.-- ..+...+.+....-.+...++.|.-+|+-.+++
T Consensus 228 ~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 228 SVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR 307 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence 88777665310 112223334433334445555555555544432
Q ss_pred ---------CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH--HhHHHHHH--------HHHhcCCHHHHH
Q 040367 210 ---------GVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNA--FVYNTLMD--------GFCLTGRVNRAK 270 (400)
Q Consensus 210 ---------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~--------~~~~~~~~~~a~ 270 (400)
..+.|-.+|-..+..-...|+.+...+++++++.. ++|-. ..+...|- .-....|.+.+.
T Consensus 308 k~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 308 KFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTR 386 (677)
T ss_pred hhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 11334455666666666677888888888877765 34321 11111111 112456777788
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHH----HHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHH
Q 040367 271 ELFVSMESMGCTHTVFSYSILING----YCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEM 346 (400)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 346 (400)
++|+...+. +|....||..+=-. -.++.++..|.+++..++ |..|-..++...+..-.+.+++|.+..++++.
T Consensus 387 ~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkf 463 (677)
T KOG1915|consen 387 QVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKF 463 (677)
T ss_pred HHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 888777763 34455555443333 346678888888887776 45677788888888888888999999999988
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 040367 347 QRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTLRI 383 (400)
Q Consensus 347 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 383 (400)
++.+ +.+..+|......-...|+.+.|..+|+-...
T Consensus 464 le~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~ 499 (677)
T KOG1915|consen 464 LEFS-PENCYAWSKYAELETSLGDTDRARAIFELAIS 499 (677)
T ss_pred HhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 8864 33677788777777788999999999988875
No 52
>PRK12370 invasion protein regulator; Provisional
Probab=99.61 E-value=3.8e-12 Score=114.70 Aligned_cols=268 Identities=13% Similarity=0.072 Sum_probs=179.7
Q ss_pred CCCHHHHHHHHHHHHh-----cCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHH---------hcCCHHHHHHHHHHHH
Q 040367 49 FPDLYTYNILINCFCK-----MGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLC---------AESRIMEAAALFTKLR 114 (400)
Q Consensus 49 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~ 114 (400)
+.+...|...+.+-.. .+++++|.+.+++..+..+ .+...|..+..++. ..+++++|...+++..
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP-~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSP-NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 3456666655555322 2346788999999887742 24555655555443 2345789999999988
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcC
Q 040367 115 VFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYAN 194 (400)
Q Consensus 115 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 194 (400)
+.+ +.+..++..+...+...|++++|...|++... .+ |.+...+..+..++...|
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~-----------------------l~-P~~~~a~~~lg~~l~~~G 386 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANL-----------------------LS-PISADIKYYYGWNLFMAG 386 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH-----------------------hC-CCCHHHHHHHHHHHHHCC
Confidence 875 55788888888888888886666666555443 32 445667888888899999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 040367 195 DWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFV 274 (400)
Q Consensus 195 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 274 (400)
++++|+..+++..+.+. .+...+..++..+...|++++|...++++.+...+.++..+..+..++...|+.++|...+.
T Consensus 387 ~~~eAi~~~~~Al~l~P-~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~ 465 (553)
T PRK12370 387 QLEEALQTINECLKLDP-TRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTK 465 (553)
T ss_pred CHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999988642 23333334444566788999999999988775433345566778888889999999999998
Q ss_pred HHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHc
Q 040367 275 SMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSK-GIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRD 349 (400)
Q Consensus 275 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 349 (400)
++.... +.+....+.+...|...| ++|...++.+.+. .-.+....+ +...+.-.|+.+.+..+ +++.+.
T Consensus 466 ~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 466 EISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred Hhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 876553 223444555666667766 4777777776653 112222222 34445557777777776 777765
No 53
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=1.4e-11 Score=103.49 Aligned_cols=282 Identities=13% Similarity=0.036 Sum_probs=216.9
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHH
Q 040367 86 NAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAK 165 (400)
Q Consensus 86 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~ 165 (400)
+........+-+...+++.+..++.+.+.+.. ++....+..-|.++...|+..+-..+-.+
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~------------------ 303 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHK------------------ 303 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHH------------------
Confidence 34444555566777888888888888888775 66777777777788888775444333333
Q ss_pred HHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 040367 166 ELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIG 245 (400)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 245 (400)
+.+. .|....+|-++.-.|...|+..+|.+.|.+....+ +.=...|..+...|.-.|..++|...+..+-+.
T Consensus 304 -----LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl- 375 (611)
T KOG1173|consen 304 -----LVDL-YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL- 375 (611)
T ss_pred -----HHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-
Confidence 3332 35577899999999999999999999999987653 222446788888899999999999999888775
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCC----Cc
Q 040367 246 VRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSK--GIK----PD 319 (400)
Q Consensus 246 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~----~~ 319 (400)
++-....+--+..-|.+.++.+.|.+.|.+..... |.|+...+.+.-.....+.+.+|..+|+..+.. .+. .-
T Consensus 376 ~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w 454 (611)
T KOG1173|consen 376 MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFW 454 (611)
T ss_pred ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccch
Confidence 22222223345566888999999999999998875 678888898888888889999999999987732 111 12
Q ss_pred hhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcccchhHHHHHHhh
Q 040367 320 VVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTLRILKCELDIRAYNCLID 398 (400)
Q Consensus 320 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~ 398 (400)
..+++.|+.++.+.+.+++|+..+++.+.. .+-+..++.++.-.|...|+++.|.+.|.+.+. +.|+..+-..++.
T Consensus 455 ~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 455 EPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLK 530 (611)
T ss_pred hHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHH
Confidence 345788999999999999999999999987 455899999999999999999999999999986 6888877766664
No 54
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.60 E-value=8.6e-11 Score=102.55 Aligned_cols=295 Identities=13% Similarity=0.134 Sum_probs=198.1
Q ss_pred HHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhc--
Q 040367 23 LFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAE-- 100 (400)
Q Consensus 23 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 100 (400)
....+...|++++|++.++.-... +.............+.+.|+.++|..+|..+++.+ +.|..-|..+..+..-.
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcc
Confidence 345567778888888888765544 33344555666777788888888888888888775 22444444444444222
Q ss_pred ---CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCC
Q 040367 101 ---SRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENIN 177 (400)
Q Consensus 101 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 177 (400)
.+.+...++|+++...- |.......+.-.+..... .-..+...+......|+|
T Consensus 88 ~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~----------------------F~~~~~~yl~~~l~KgvP 143 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDE----------------------FKERLDEYLRPQLRKGVP 143 (517)
T ss_pred cccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHH----------------------HHHHHHHHHHHHHhcCCc
Confidence 24566667777766542 333332222222221111 134455666667777755
Q ss_pred CChHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----C----------CCCCHH--HHHHHHHHHHhCCChHHHHHHHHHH
Q 040367 178 PDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQ----G----------VQPNVV--TFNVIMDELCKNGKMDEASRLLDLM 241 (400)
Q Consensus 178 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~----------~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~ 241 (400)
+ +|+.+-..|......+-..+++...... + -+|+.. ++..+...|...|++++|+++.++.
T Consensus 144 s---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~a 220 (517)
T PF12569_consen 144 S---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKA 220 (517)
T ss_pred h---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3 5666666666665665566666665432 1 134443 4456677888999999999999999
Q ss_pred HHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchh
Q 040367 242 IQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVV 321 (400)
Q Consensus 242 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 321 (400)
+++. +..+..|..-...+-+.|++.+|.+.++.....+ ..|-..-+..+..+.+.|+.++|.+++....+.+..|-..
T Consensus 221 I~ht-Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~ 298 (517)
T PF12569_consen 221 IEHT-PTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSN 298 (517)
T ss_pred HhcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccC
Confidence 9973 2247788888999999999999999999999887 5677888888899999999999999999998876533322
Q ss_pred ------hH--HHHHHHHHhhCcHHHHHHHHHHHHH
Q 040367 322 ------IY--NTLFVVLFEIHQVERAFKLFDEMQR 348 (400)
Q Consensus 322 ------~~--~~l~~~~~~~~~~~~a~~~~~~~~~ 348 (400)
.| .-...+|.+.|++..|++.|....+
T Consensus 299 L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 299 LNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 22 3346788899999999888877654
No 55
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.58 E-value=3.7e-12 Score=100.95 Aligned_cols=199 Identities=14% Similarity=0.132 Sum_probs=131.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC-------ChHHHHHHHHHHHHcCCCCCH-HhHHHH
Q 040367 185 SVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNG-------KMDEASRLLDLMIQIGVRPNA-FVYNTL 256 (400)
Q Consensus 185 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~-~~~~~l 256 (400)
.++-.|.+.+++++|..+.+++.- .++.-|..-.-.+...| ...-|.+.|+-.-+++..-|. .--.++
T Consensus 290 NL~iYyL~q~dVqeA~~L~Kdl~P----ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsm 365 (557)
T KOG3785|consen 290 NLIIYYLNQNDVQEAISLCKDLDP----TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSM 365 (557)
T ss_pred hheeeecccccHHHHHHHHhhcCC----CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHH
Confidence 345567788889998888776542 22322222222222333 344566666655554433332 223345
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhH-HHHHHHHHhhCc
Q 040367 257 MDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIY-NTLFVVLFEIHQ 335 (400)
Q Consensus 257 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~ 335 (400)
..++.-..++++.+..+..+...-...|...+ .+.++++..|++.+|.++|-+.....++ |..+| ..+.++|.+.++
T Consensus 366 As~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkk 443 (557)
T KOG3785|consen 366 ASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKK 443 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCC
Confidence 55666667889999888888876544444444 5788999999999999999887765555 55555 456689999999
Q ss_pred HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcccchhHHHH
Q 040367 336 VERAFKLFDEMQRDGVAAD-TWTYRTFIDGLCKNSYIVEAVELFRTLRILKCELDIRAYN 394 (400)
Q Consensus 336 ~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 394 (400)
++.|++++-.+-. +.+ ......+.+.|.+.+.+--|.+.|+.+.. +.|+.+.|.
T Consensus 444 P~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnWe 498 (557)
T KOG3785|consen 444 PQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENWE 498 (557)
T ss_pred chHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCccccC
Confidence 9999988655432 222 33445667789999999999999998886 467777664
No 56
>PRK12370 invasion protein regulator; Provisional
Probab=99.58 E-value=1.3e-11 Score=111.25 Aligned_cols=278 Identities=12% Similarity=0.013 Sum_probs=187.9
Q ss_pred CCChhhHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcc
Q 040367 84 TPNAVTFTSLIKGLCA-----ESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVE 158 (400)
Q Consensus 84 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 158 (400)
..+...|...+.+... .+++++|.+.|++..+.. +.+...|..+..++...+..... ...
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~--------------~~~ 317 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIF--------------DKQ 317 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCc--------------ccc
Confidence 3455555555544221 234689999999999774 33566777776655432211000 001
Q ss_pred cchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHH
Q 040367 159 GFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLL 238 (400)
Q Consensus 159 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 238 (400)
+.+++|...+++..+.+ |.+...+..+..++...|++++|...++++.+.+ +.+...+..+..++...|++++|...+
T Consensus 318 ~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~ 395 (553)
T PRK12370 318 NAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTI 395 (553)
T ss_pred hHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 22456666666666654 4577888888889999999999999999999875 556778888899999999999999999
Q ss_pred HHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 040367 239 DLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKP 318 (400)
Q Consensus 239 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 318 (400)
+++.+.... +...+..++..+...|++++|...++++.....+.++..+..+..++...|++++|...++++.... +.
T Consensus 396 ~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~ 473 (553)
T PRK12370 396 NECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-IT 473 (553)
T ss_pred HHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-ch
Confidence 999987433 2333334455566789999999999998876423355567788888999999999999999876642 22
Q ss_pred chhhHHHHHHHHHhhCcHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhc
Q 040367 319 DVVIYNTLFVVLFEIHQVERAFKLFDEMQRDG-VAADTWTYRTFIDGLCKNSYIVEAVELFRTLRILK 385 (400)
Q Consensus 319 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 385 (400)
+....+.+...+...| +.|...++.+.+.. ..+....+ +...+.-.|+.+.+..+ +++.+.|
T Consensus 474 ~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 474 GLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 3444555666667667 47888777776531 12222222 33445556777776665 7777543
No 57
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.58 E-value=8.5e-12 Score=100.48 Aligned_cols=201 Identities=12% Similarity=0.027 Sum_probs=169.0
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 040367 179 DVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMD 258 (400)
Q Consensus 179 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 258 (400)
....+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 45677888899999999999999999998764 4467788888999999999999999999999874 335677888889
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHH
Q 040367 259 GFCLTGRVNRAKELFVSMESMGC-THTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVE 337 (400)
Q Consensus 259 ~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 337 (400)
.+...|++++|...+.+..+... +.....+..+...+...|++++|.+.+.+..+... .+...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCHH
Confidence 99999999999999999987432 22345677788899999999999999999988643 35667888889999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 040367 338 RAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTLRI 383 (400)
Q Consensus 338 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 383 (400)
+|...+++..+. .+.+...+..+...+...|+.++|..+.+.+..
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999999886 345677777888888999999999999888765
No 58
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.54 E-value=2.5e-11 Score=97.79 Aligned_cols=203 Identities=13% Similarity=0.067 Sum_probs=164.9
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHH
Q 040367 120 PNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEA 199 (400)
Q Consensus 120 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 199 (400)
.....+..+...+...|++++|...+++... .. +.+...+..+...+...|++++|
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~-----------------------~~-p~~~~~~~~la~~~~~~~~~~~A 84 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALE-----------------------HD-PDDYLAYLALALYYQQLGELEKA 84 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----------------------hC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 3466788888999999997777666665532 21 34567888889999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040367 200 KCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGV-RPNAFVYNTLMDGFCLTGRVNRAKELFVSMES 278 (400)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 278 (400)
.+.+++..+.. +.+...+..+...+...|++++|.+.++++..... ......+..+..++...|++++|...+.+..+
T Consensus 85 ~~~~~~al~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 163 (234)
T TIGR02521 85 EDSFRRALTLN-PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ 163 (234)
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999998864 44667788888899999999999999999987532 22345677788899999999999999999988
Q ss_pred cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHc
Q 040367 279 MGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRD 349 (400)
Q Consensus 279 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 349 (400)
.. +.+...+..+...+...|++++|...+++..+. .+.+...+..+...+...|+.++|..+.+.+...
T Consensus 164 ~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 164 ID-PQRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred hC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 75 446778889999999999999999999999887 3446667777888888999999999998887653
No 59
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=9.3e-11 Score=98.71 Aligned_cols=286 Identities=11% Similarity=0.021 Sum_probs=214.0
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 040367 50 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLI 129 (400)
Q Consensus 50 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 129 (400)
.+......-.+-+...+++++..++.+.+.+.. ++....+..-|.++.+.|+..+-..+=.++.+.- |-.+.+|.++.
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg 319 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVG 319 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHH
Confidence 355556666677788899999999999999875 5666677777778889998888777777777663 55788999999
Q ss_pred HHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 040367 130 NGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQ 209 (400)
Q Consensus 130 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 209 (400)
--|...|..++|.++|.+....++. =...|-.....|+-.|..+.|+..+..+-+.
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~------------------------fgpaWl~fghsfa~e~EhdQAmaaY~tAarl 375 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPT------------------------FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL 375 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCcc------------------------ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh
Confidence 9999999987777777776543322 2347888888888899999999888877653
Q ss_pred CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc----C--CCC
Q 040367 210 GVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESM----G--CTH 283 (400)
Q Consensus 210 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~--~~~ 283 (400)
- +-....+--+.--|.+.++.+.|.+.|.++... .+.|+.+.+-+.-.....+.+.+|...|+..... + ...
T Consensus 376 ~-~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~ 453 (611)
T KOG1173|consen 376 M-PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIF 453 (611)
T ss_pred c-cCCcchHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccc
Confidence 1 111111222334577788999999999988876 3557788888888878888999999988877521 1 011
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 040367 284 TVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFID 363 (400)
Q Consensus 284 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 363 (400)
...+++.|..+|.+.+.+++|+..+++.+.... .+..++.++.-.+...|+++.|.+.|.+.+- +.|+-.+...++.
T Consensus 454 w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~-k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 454 WEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSP-KDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLK 530 (611)
T ss_pred hhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCC-CchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHH
Confidence 334578888899999999999999999888753 4788888998899999999999999998876 4677666666655
Q ss_pred HHH
Q 040367 364 GLC 366 (400)
Q Consensus 364 ~~~ 366 (400)
.+.
T Consensus 531 ~ai 533 (611)
T KOG1173|consen 531 LAI 533 (611)
T ss_pred HHH
Confidence 443
No 60
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=4.4e-10 Score=93.12 Aligned_cols=322 Identities=13% Similarity=0.070 Sum_probs=218.5
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 040367 55 YNILINCFCKMGRVSHGFVVLGRILRSCFTPN-AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLY 133 (400)
Q Consensus 55 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 133 (400)
+....+-|.+.|++++|++.|.+.+.. .|+ +..|.....+|...|+++++.+.-.+.++.+ +.-+..+..-..++.
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~-P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN-PDYVKALLRRASAHE 194 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC-cHHHHHHHHHHHHHH
Confidence 455667788999999999999999987 567 7888899999999999999999888888763 223556777777888
Q ss_pred hcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHH--------HHHh-CC--CCCChHhHHHHHHHHHh----------
Q 040367 134 RTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFL--------QMKD-EN--INPDVVTYTSVIRGFCY---------- 192 (400)
Q Consensus 134 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~--------~~~~-~~--~~~~~~~~~~l~~~~~~---------- 192 (400)
..|++++|+.=..-.--.+. +........+.+++. +-.+ .+ +-|+.....+....+-.
T Consensus 195 ~lg~~~eal~D~tv~ci~~~-F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~ 273 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEG-FQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKS 273 (606)
T ss_pred hhccHHHHHHhhhHHHHhhh-cccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCC
Confidence 88888877653322211110 000001111112221 1111 11 12333222222222210
Q ss_pred ---------------cC---CHHHHHHHHHHHHhCC-CCC-----CH------HHHHHHHHHHHhCCChHHHHHHHHHHH
Q 040367 193 ---------------AN---DWNEAKCLLIEMMDQG-VQP-----NV------VTFNVIMDELCKNGKMDEASRLLDLMI 242 (400)
Q Consensus 193 ---------------~~---~~~~a~~~~~~~~~~~-~~~-----~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~ 242 (400)
.+ .+..|...+.+-.... ..+ |. .+...-..-+.-.|+.-.|..-|+..+
T Consensus 274 ~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I 353 (606)
T KOG0547|consen 274 DKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAI 353 (606)
T ss_pred ccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHH
Confidence 01 1223333332211100 011 11 111111222344688889999999999
Q ss_pred HcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhh
Q 040367 243 QIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVI 322 (400)
Q Consensus 243 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 322 (400)
+....+ ...|-.+..+|...++.++....|....+.+ +.++.+|..-.+.+.-.+++++|..-|++.++.... +...
T Consensus 354 ~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~ 430 (606)
T KOG0547|consen 354 KLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYA 430 (606)
T ss_pred hcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHH
Confidence 875443 3337777788999999999999999999987 678889999999999999999999999999987533 5666
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Q 040367 323 YNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTLRIL 384 (400)
Q Consensus 323 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 384 (400)
|-.+..+..+.++++++...|++.+++ ++..+..|+.....+..++++++|.+.|+..++.
T Consensus 431 ~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 431 YIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 667777777899999999999999987 7777999999999999999999999999999863
No 61
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.52 E-value=3.4e-11 Score=103.80 Aligned_cols=244 Identities=20% Similarity=0.202 Sum_probs=165.7
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhc-----C-CCCChhh-HHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-C
Q 040367 52 LYTYNILINCFCKMGRVSHGFVVLGRILRS-----C-FTPNAVT-FTSLIKGLCAESRIMEAAALFTKLRVF-----G-C 118 (400)
Q Consensus 52 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~ 118 (400)
..+...+...|...|+++.|..++++.++. | ..|...+ .+.+...|...+++.+|..+|+++... | .
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 456677899999999999999999988775 1 1344433 345778899999999999999998753 3 1
Q ss_pred -CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCCC-hHhHHHHHHHHHhcCCH
Q 040367 119 -EPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENINPD-VVTYTSVIRGFCYANDW 196 (400)
Q Consensus 119 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~ 196 (400)
+.-..+++.|..+|.+.|++++|...+ +.|.+++++..... .|. ...++.+...|...+++
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~----------------e~Al~I~~~~~~~~-~~~v~~~l~~~~~~~~~~~~~ 341 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYC----------------ERALEIYEKLLGAS-HPEVAAQLSELAAILQSMNEY 341 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHH----------------HHHHHHHHHhhccC-hHHHHHHHHHHHHHHHHhcch
Confidence 123467888888999999999999984 55677777733322 222 23456677788889999
Q ss_pred HHHHHHHHHHHhCC---CC----CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC----C--C-CCHHhHHHHHHHHHh
Q 040367 197 NEAKCLLIEMMDQG---VQ----PNVVTFNVIMDELCKNGKMDEASRLLDLMIQIG----V--R-PNAFVYNTLMDGFCL 262 (400)
Q Consensus 197 ~~a~~~~~~~~~~~---~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~--~-~~~~~~~~l~~~~~~ 262 (400)
++|..+++...+.- .. .-..+++.+...|...|++++|.+++++++... . . -....++.+...|.+
T Consensus 342 Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~ 421 (508)
T KOG1840|consen 342 EEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEE 421 (508)
T ss_pred hHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHH
Confidence 99999988765420 11 123567777778888888888888887776541 1 1 113455666777777
Q ss_pred cCCHHHHHHHHHHHHh----cC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040367 263 TGRVNRAKELFVSMES----MG--CTHTVFSYSILINGYCKNKEIEGALSLYGEML 312 (400)
Q Consensus 263 ~~~~~~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 312 (400)
.+++.+|..+|.+... .| .+....+|..|...|...|+++.|.++.....
T Consensus 422 ~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 422 LKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 7777777776665432 11 11223456666667777777777776665554
No 62
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.52 E-value=3.2e-09 Score=91.05 Aligned_cols=72 Identities=15% Similarity=0.219 Sum_probs=41.0
Q ss_pred hHHHHhcCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 040367 4 FDYMLNMRPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 79 (400)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 79 (400)
|+..+..-|...-...|...+......+-++.++.++++-.+. ++..-...+..+...+++++|.+.+..++
T Consensus 125 fdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vl 196 (835)
T KOG2047|consen 125 FDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVL 196 (835)
T ss_pred HHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhc
Confidence 4444444444233445666666666666666666666666553 23335555666666666666666665554
No 63
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.51 E-value=2.9e-11 Score=104.22 Aligned_cols=245 Identities=19% Similarity=0.172 Sum_probs=158.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccc
Q 040367 87 AVTFTSLIKGLCAESRIMEAAALFTKLRVF-----G-CEPNVFT-YNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEG 159 (400)
Q Consensus 87 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 159 (400)
..+...+...|...|+++.|+.+++...+. | ..|...+ .+.+...|...+++++|..+|
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly-------------- 264 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLY-------------- 264 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHH--------------
Confidence 346667889999999999999999887654 2 1233333 344777888999999998885
Q ss_pred chHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-CCCH-HHHHHHHHHHHhCCChH
Q 040367 160 FVDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQ-----GV-QPNV-VTFNVIMDELCKNGKMD 232 (400)
Q Consensus 160 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~~~~~ 232 (400)
++|+.+++.......+.-..+++.|..+|.+.|++++|...++...+. +. .|.. ..++.+...+...++++
T Consensus 265 --~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~E 342 (508)
T KOG1840|consen 265 --EEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYE 342 (508)
T ss_pred --HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchh
Confidence 456667777766654555667888888999999999999888877542 11 1121 23455556677777888
Q ss_pred HHHHHHHHHHHcC---CCC----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC----C---CCChhhHHHHHHHHHhc
Q 040367 233 EASRLLDLMIQIG---VRP----NAFVYNTLMDGFCLTGRVNRAKELFVSMESMG----C---THTVFSYSILINGYCKN 298 (400)
Q Consensus 233 ~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~---~~~~~~~~~l~~~~~~~ 298 (400)
+|..+++...+.- +.+ -..+++.|...|...|++++|.++++.+.... . .-....++.|...|.+.
T Consensus 343 ea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~ 422 (508)
T KOG1840|consen 343 EAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEEL 422 (508)
T ss_pred HHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHh
Confidence 8877777655430 111 13456667777777777777777777665421 1 11123455666667777
Q ss_pred CCHHHHHHHHHHHHhC----CC--CCchhhHHHHHHHHHhhCcHHHHHHHHHHHH
Q 040367 299 KEIEGALSLYGEMLSK----GI--KPDVVIYNTLFVVLFEIHQVERAFKLFDEMQ 347 (400)
Q Consensus 299 ~~~~~a~~~~~~~~~~----~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 347 (400)
+.+++|.++|.+...- |+ +....+|..|...|...|+++.|.++.+.+.
T Consensus 423 k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 423 KKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred cccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 7777666666554331 21 1123456666666777777777766666554
No 64
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.50 E-value=6.8e-12 Score=98.34 Aligned_cols=232 Identities=14% Similarity=-0.005 Sum_probs=160.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHH
Q 040367 89 TFTSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELF 168 (400)
Q Consensus 89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~ 168 (400)
--+.+..+|.+.|.+.+|.+.++...+. .|-+.||..|-.+|.+..++..|+.++.+..
T Consensus 225 Wk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gl------------------- 283 (478)
T KOG1129|consen 225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGL------------------- 283 (478)
T ss_pred HHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhh-------------------
Confidence 3356667777888888888777777665 5667777777778877777655555554432
Q ss_pred HHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q 040367 169 LQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRP 248 (400)
Q Consensus 169 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 248 (400)
+. +|.+........+.+-..++.++|.++|+...+.. +.+......+...|.-.++++-|+.+++++++.|..
T Consensus 284 ----d~-fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~- 356 (478)
T KOG1129|consen 284 ----DS-FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ- 356 (478)
T ss_pred ----hc-CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-
Confidence 22 23444444556667777777888888888777653 445555666666777777888888888888887765
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHH
Q 040367 249 NAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTH--TVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTL 326 (400)
Q Consensus 249 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 326 (400)
++..|+.+.-+|.-.++++-++..|.+....--.| -..+|..+.......|++..|.+.|+-...++.. +...++.|
T Consensus 357 speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNL 435 (478)
T KOG1129|consen 357 SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNL 435 (478)
T ss_pred ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhH
Confidence 67777777777777778888877777776543223 2456777777777788888888888877766433 56777777
Q ss_pred HHHHHhhCcHHHHHHHHHHHHHc
Q 040367 327 FVVLFEIHQVERAFKLFDEMQRD 349 (400)
Q Consensus 327 ~~~~~~~~~~~~a~~~~~~~~~~ 349 (400)
...-.+.|+++.|..++..+...
T Consensus 436 avL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 436 AVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhhcCchHHHHHHHHHhhhh
Confidence 77777888888888888777654
No 65
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.50 E-value=1.3e-11 Score=108.87 Aligned_cols=332 Identities=13% Similarity=0.085 Sum_probs=175.5
Q ss_pred HHHHhcCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCC
Q 040367 5 DYMLNMRPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFT 84 (400)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 84 (400)
-.+...|.. ||..||..+|.-|+..|+.+.|- +|..|.-...+.+...|+.++.+....++.+.+. .
T Consensus 14 a~~e~~gi~-PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------e 80 (1088)
T KOG4318|consen 14 ALHEISGIL-PNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------E 80 (1088)
T ss_pred HHHHHhcCC-CchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------C
Confidence 344444555 56666666666666666666665 6666655555555556666666666555555543 4
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCc-------
Q 040367 85 PNAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGV------- 157 (400)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------- 157 (400)
|...+|..|..+|...|++.. |+...+ ....+...+...|.-.....++..+...+.....
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~ill 148 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILL 148 (1088)
T ss_pred CchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHH
Confidence 555666666666666666544 111111 1112223333333333333333222111111000
Q ss_pred ---ccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHH
Q 040367 158 ---EGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYAND-WNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDE 233 (400)
Q Consensus 158 ---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 233 (400)
.|.++.+++++..+.-.... . .+..+++-+..... +++-........+ .|++.+|..++.+....|+.+.
T Consensus 149 lv~eglwaqllkll~~~Pvsa~~-~--p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~ 222 (1088)
T KOG4318|consen 149 LVLEGLWAQLLKLLAKVPVSAWN-A--PFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDG 222 (1088)
T ss_pred HHHHHHHHHHHHHHhhCCccccc-c--hHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhh
Confidence 33344444444333222100 0 11112333333222 2332222222222 4788888888888888888888
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040367 234 ASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLS 313 (400)
Q Consensus 234 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 313 (400)
|..++..|.+.|++.+.+-|..|+-+ .++...++.+++-|...|+.|+..|+...+-.+...|....+.
T Consensus 223 Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~-------- 291 (1088)
T KOG4318|consen 223 AKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGE-------- 291 (1088)
T ss_pred HHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcc--------
Confidence 88888888888888888877777755 7778888888888888888888888887777777654422221
Q ss_pred CCCCCchhhHHHHHHHHHhhCcHHHHHHHH------------HHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 040367 314 KGIKPDVVIYNTLFVVLFEIHQVERAFKLF------------DEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTL 381 (400)
Q Consensus 314 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 381 (400)
.|.+ ....+++-...-+-.| ..|.+.+ .+..-.|+.....+|.. ..-...+|+-++..++...|
T Consensus 292 e~sq-~~hg~tAavrsaa~rg--~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~-c~~l~hQgk~e~veqlvg~l 367 (1088)
T KOG4318|consen 292 EGSQ-LAHGFTAAVRSAACRG--LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSM-CEKLRHQGKGEEVEQLVGQL 367 (1088)
T ss_pred cccc-hhhhhhHHHHHHHhcc--cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHH-HHHHHHcCCCchHHHHHhhh
Confidence 1222 2222222222222223 2222222 22222244434444443 34455678888888888888
Q ss_pred H
Q 040367 382 R 382 (400)
Q Consensus 382 ~ 382 (400)
.
T Consensus 368 ~ 368 (1088)
T KOG4318|consen 368 L 368 (1088)
T ss_pred c
Confidence 6
No 66
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.49 E-value=5.1e-11 Score=105.35 Aligned_cols=280 Identities=16% Similarity=0.230 Sum_probs=204.4
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 040367 38 SLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKLRVFG 117 (400)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 117 (400)
.++-.+...|+.|+..+|..+|.-|+..|+.+.|- +|.-|.-...+.+...|+.++......++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 45667888899999999999999999999999998 8998887777778889999999988888877766
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHH-HHcCCCCCCcccchHHHHHHHHHHHh-CCCCCChHhHHHHHHHHHhcCC
Q 040367 118 CEPNVFTYNTLINGLYRTGHTIVALNLFEE-MASGNGEFGVEGFVDKAKELFLQMKD-ENINPDVVTYTSVIRGFCYAND 195 (400)
Q Consensus 118 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~ 195 (400)
.|...+|..|..+|...|+... ++..++ +..........|.......++..+.- .+.-||.. ..+....-.|-
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~egl 154 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGL 154 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHH
Confidence 6889999999999999999766 333333 44444444444545555555554322 23445543 33444566777
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 040367 196 WNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVS 275 (400)
Q Consensus 196 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 275 (400)
|+.+++++..+...... .+... +++-+... .....+++.......-.|++.++..++.+-...|+.+.|..++.+
T Consensus 155 waqllkll~~~Pvsa~~-~p~~v--fLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~e 229 (1088)
T KOG4318|consen 155 WAQLLKLLAKVPVSAWN-APFQV--FLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYE 229 (1088)
T ss_pred HHHHHHHHhhCCccccc-chHHH--HHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 88888888766433211 11111 23333322 233334444433322268999999999999999999999999999
Q ss_pred HHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHH
Q 040367 276 MESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFK 341 (400)
Q Consensus 276 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 341 (400)
|.+.|.+.+..-|-.|+-+ .++...+..+++-|.+.|+.|+..|+...+..+..+|....+.+
T Consensus 230 mke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e 292 (1088)
T KOG4318|consen 230 MKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEE 292 (1088)
T ss_pred HHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhccc
Confidence 9999988888877777755 78889999999999999999999999988888887666544433
No 67
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.49 E-value=3.4e-11 Score=94.55 Aligned_cols=234 Identities=14% Similarity=0.098 Sum_probs=191.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHH
Q 040367 126 NTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIE 205 (400)
Q Consensus 126 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 205 (400)
+.+..+|.+.|-+.+|.+.|+. ..+. .|-+.||..|-++|.+..++..|+.++.+
T Consensus 227 ~Q~gkCylrLgm~r~Aekqlqs-----------------------sL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~ 281 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQS-----------------------SLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGE 281 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHH-----------------------Hhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhh
Confidence 5678888888885555555444 4443 45667999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh
Q 040367 206 MMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTV 285 (400)
Q Consensus 206 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 285 (400)
-.+. .+.+.....-+...+...++.++|.++++...+.. +.+.....++...|.-.++++-|...|+++.+.| ..++
T Consensus 282 gld~-fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~sp 358 (478)
T KOG1129|consen 282 GLDS-FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSP 358 (478)
T ss_pred hhhc-CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCCh
Confidence 8876 34455445567778888999999999999999874 4467777788888999999999999999999999 5689
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc--hhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 040367 286 FSYSILINGYCKNKEIEGALSLYGEMLSKGIKPD--VVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFID 363 (400)
Q Consensus 286 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 363 (400)
..|+.+.-+|.-.++++-++..|++....--.|+ ...|-.+.......|++..|.+.|+-.+..+ ..+...++.|.-
T Consensus 359 eLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLav 437 (478)
T KOG1129|consen 359 ELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAV 437 (478)
T ss_pred HHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHH
Confidence 9999999999999999999999999887533333 4578888888889999999999999988763 346788999998
Q ss_pred HHHhcCcHHHHHHHHHHHHHhcccchh
Q 040367 364 GLCKNSYIVEAVELFRTLRILKCELDI 390 (400)
Q Consensus 364 ~~~~~g~~~~a~~~~~~~~~~~~~p~~ 390 (400)
.-.+.|+.+.|..++..... +.|+.
T Consensus 438 L~~r~G~i~~Arsll~~A~s--~~P~m 462 (478)
T KOG1129|consen 438 LAARSGDILGARSLLNAAKS--VMPDM 462 (478)
T ss_pred HHhhcCchHHHHHHHHHhhh--hCccc
Confidence 88999999999999999886 34554
No 68
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.46 E-value=3.4e-09 Score=92.78 Aligned_cols=281 Identities=12% Similarity=0.098 Sum_probs=187.8
Q ss_pred ChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----CChhhHHHHHHHHHhcCCCCChhhH
Q 040367 16 PVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKM-----GRVSHGFVVLGRILRSCFTPNAVTF 90 (400)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~ 90 (400)
...........+.+.|+.++|..++..+...+ |.|..-|..+..+..-. .+.+...++|+.+...- |.....
T Consensus 37 k~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~ 113 (517)
T PF12569_consen 37 KLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKY--PRSDAP 113 (517)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhC--ccccch
Confidence 34556777889999999999999999999986 33555556666665322 25677788999887763 444444
Q ss_pred HHHHHHHHhcCCHH-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHH
Q 040367 91 TSLIKGLCAESRIM-EAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFL 169 (400)
Q Consensus 91 ~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 169 (400)
..+.-.+.....+. .+...+..+...|+| .+|..|-..|.......-..+++................+
T Consensus 114 ~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~------- 183 (517)
T PF12569_consen 114 RRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGD------- 183 (517)
T ss_pred hHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCcc-------
Confidence 44443344433444 455667777777754 3445555555544333333333333222110000000000
Q ss_pred HHHhCCCCCCh--HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 040367 170 QMKDENINPDV--VTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVR 247 (400)
Q Consensus 170 ~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 247 (400)
....-+|+. .++..+...|...|++++|++++++.+++. |..+..|..-...+-+.|++.+|.+.++.+......
T Consensus 184 --~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~ 260 (517)
T PF12569_consen 184 --DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA 260 (517)
T ss_pred --ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh
Confidence 001123444 355667788889999999999999999974 334778888899999999999999999999987533
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhh--------HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040367 248 PNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFS--------YSILINGYCKNKEIEGALSLYGEMLS 313 (400)
Q Consensus 248 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~~~~~~~a~~~~~~~~~ 313 (400)
|..+-+..+..+.+.|+.++|..++....+.+..|.... ......+|.+.|++..|++.|....+
T Consensus 261 -DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 261 -DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred -hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 777777788889999999999999999987664332222 24567889999999999887776655
No 69
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.45 E-value=3.1e-08 Score=83.55 Aligned_cols=86 Identities=12% Similarity=0.065 Sum_probs=70.2
Q ss_pred HHHHhcCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCC
Q 040367 5 DYMLNMRPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFT 84 (400)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 84 (400)
++-++.+|. |+.+|+.|++-+..+ .++++.+.++++... .+-....|...+..-...++++....+|.+.+.. .
T Consensus 10 ~~rie~nP~--di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--v 83 (656)
T KOG1914|consen 10 RERIEENPY--DIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--V 83 (656)
T ss_pred HHHHhcCCc--cHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--H
Confidence 344566666 999999999987766 999999999999876 3556788999999999999999999999998876 4
Q ss_pred CChhhHHHHHHH
Q 040367 85 PNAVTFTSLIKG 96 (400)
Q Consensus 85 ~~~~~~~~l~~~ 96 (400)
.+...|..-++-
T Consensus 84 LnlDLW~lYl~Y 95 (656)
T KOG1914|consen 84 LNLDLWKLYLSY 95 (656)
T ss_pred hhHhHHHHHHHH
Confidence 466667666653
No 70
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=1.1e-08 Score=83.42 Aligned_cols=281 Identities=13% Similarity=0.023 Sum_probs=205.8
Q ss_pred cCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCC-----------cccchHHHHHH
Q 040367 100 ESRIMEAAALFTKLRVF-GCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFG-----------VEGFVDKAKEL 167 (400)
Q Consensus 100 ~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----------~~~~~~~a~~~ 167 (400)
.++...|.+.+-.+... -++.|+.....+..++...|+.+.|+..|++....++..- ..|+.++...+
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L 288 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSAL 288 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHH
Confidence 44444444444333333 2466888899999999999999999999999887765422 26666776666
Q ss_pred HHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 040367 168 FLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVR 247 (400)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 247 (400)
...+.... .-+...|-.-+......++++.|+.+-++.++.+ +.+...+..-...+...|+.++|.-.|+...... +
T Consensus 289 ~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p 365 (564)
T KOG1174|consen 289 MDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-P 365 (564)
T ss_pred HHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-h
Confidence 66665432 1233445444555667788999999999888764 2344455555567788899999999999887752 3
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHH-HHHH-hcCCHHHHHHHHHHHHhCCCCCc-hhhHH
Q 040367 248 PNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILI-NGYC-KNKEIEGALSLYGEMLSKGIKPD-VVIYN 324 (400)
Q Consensus 248 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~~~~~~~-~~~~~ 324 (400)
-+...|.-|+..|...|++.+|...-+...+.- +.+..+...+. ..+. ....-++|.++++...+. .|+ ....+
T Consensus 366 ~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~-~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~ 442 (564)
T KOG1174|consen 366 YRLEIYRGLFHSYLAQKRFKEANALANWTIRLF-QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVN 442 (564)
T ss_pred hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh-hcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHH
Confidence 467899999999999999999998887766542 45666666553 3332 334467899998888775 343 33557
Q ss_pred HHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcccchh
Q 040367 325 TLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTLRILKCELDI 390 (400)
Q Consensus 325 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 390 (400)
.+...+...|..+.++.++++.... .||....+.|.+.+...+.+++|.+.|...+. +.|+.
T Consensus 443 ~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~~ 504 (564)
T KOG1174|consen 443 LIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QDPKS 504 (564)
T ss_pred HHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCccc
Confidence 7788899999999999999998874 78999999999999999999999999999886 34543
No 71
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.43 E-value=8.1e-09 Score=90.49 Aligned_cols=366 Identities=14% Similarity=0.073 Sum_probs=256.7
Q ss_pred CChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHH
Q 040367 15 PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLI 94 (400)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 94 (400)
-++..|..+.-++...|++..+.+.|++....- .-..+.|..+...+...|.-..|..+++........|+..+-..++
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 477889999999999999999999999987653 3367789999999999999999999998877654334433333333
Q ss_pred -HHHH-hcCCHHHHHHHHHHHHHc--CC--CCCHHHHHHHHHHHHhc-----------CChHHHHHHHHHHHcCCCCCCc
Q 040367 95 -KGLC-AESRIMEAAALFTKLRVF--GC--EPNVFTYNTLINGLYRT-----------GHTIVALNLFEEMASGNGEFGV 157 (400)
Q Consensus 95 -~~~~-~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~ 157 (400)
..|. +.+..++++.+-.++... +. ......|..+.-+|... ....++++.+++..+.++....
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~ 479 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPL 479 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence 3343 456777777777776652 11 22445555555555432 2346778888888776654333
Q ss_pred -----------ccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCC-------------
Q 040367 158 -----------EGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQ-GVQ------------- 212 (400)
Q Consensus 158 -----------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~------------- 212 (400)
.++++.|.+..++..+-+-..+...|..+.-.+...+++.+|+.+.+...+. |..
T Consensus 480 ~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~ 559 (799)
T KOG4162|consen 480 VIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELT 559 (799)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhh
Confidence 7788999999999888765778889999999999999999999999887653 110
Q ss_pred -----CCHHHHHHHHHHHHh---------C--------------CChHHHHHHHHHHH--------HcC---------CC
Q 040367 213 -----PNVVTFNVIMDELCK---------N--------------GKMDEASRLLDLMI--------QIG---------VR 247 (400)
Q Consensus 213 -----~~~~~~~~l~~~~~~---------~--------------~~~~~a~~~~~~~~--------~~~---------~~ 247 (400)
....|...++..+-. . ++..++.+...++. ..+ ..
T Consensus 560 ~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~ 639 (799)
T KOG4162|consen 560 FNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVL 639 (799)
T ss_pred cccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCccccc
Confidence 001122222222210 0 01111111111110 001 00
Q ss_pred --CC------HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc
Q 040367 248 --PN------AFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPD 319 (400)
Q Consensus 248 --~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 319 (400)
|+ ...+......+.+.+..++|...+.+..... +.....|......+...|.+++|.+.|......++. +
T Consensus 640 ~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~-h 717 (799)
T KOG4162|consen 640 PGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD-H 717 (799)
T ss_pred CCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC-C
Confidence 11 1123345566778888889888888887765 557778888888899999999999999998886432 5
Q ss_pred hhhHHHHHHHHHhhCcHHHHHH--HHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Q 040367 320 VVIYNTLFVVLFEIHQVERAFK--LFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTLRIL 384 (400)
Q Consensus 320 ~~~~~~l~~~~~~~~~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 384 (400)
+.+..++..++.+.|+...|.. ++..+.+.+ +.+...|..+...+-+.|+.+.|.+.|....+.
T Consensus 718 v~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 718 VPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred cHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 6678899999999999888888 999999875 347999999999999999999999999998764
No 72
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=1.4e-08 Score=86.39 Aligned_cols=371 Identities=13% Similarity=0.068 Sum_probs=194.5
Q ss_pred hHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 040367 19 SFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLC 98 (400)
Q Consensus 19 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 98 (400)
..-+=++.+.++|++++|.+...++...+ +.+...+..-+-++++.+++++|+.+.+.-... ..+...+--=+.+..
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHH
Confidence 33444667788888999999988888876 556677777777888888888888555443211 111111111123334
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcc----cchHHHHHHHH-HHHh
Q 040367 99 AESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVE----GFVDKAKELFL-QMKD 173 (400)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~a~~~~~-~~~~ 173 (400)
+.+..++|+..++... +.+..+...-...+.+.|++++|+++|+.+.+.+...... +....+-..-- .+..
T Consensus 91 rlnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~ 166 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQS 166 (652)
T ss_pred HcccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHh
Confidence 6778888888777222 2344466666777788888888888888886554322110 00000000000 0111
Q ss_pred CCCCCChHhHHHH---HHHHHhcCCHHHHHHHHHHHHhC-------C-CC-----CCHH-HHHHHHHHHHhCCChHHHHH
Q 040367 174 ENINPDVVTYTSV---IRGFCYANDWNEAKCLLIEMMDQ-------G-VQ-----PNVV-TFNVIMDELCKNGKMDEASR 236 (400)
Q Consensus 174 ~~~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~-------~-~~-----~~~~-~~~~l~~~~~~~~~~~~a~~ 236 (400)
....| ..+|..+ ...+...|++.+|+++++...+. + .. .+.. +-..+.-.+-..|+..+|..
T Consensus 167 v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~ 245 (652)
T KOG2376|consen 167 VPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASS 245 (652)
T ss_pred ccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 11111 1122222 12233445555555555444110 0 00 0000 11112223334444444444
Q ss_pred HHHHHHHcCCCC--------------------------------------------------------------------
Q 040367 237 LLDLMIQIGVRP-------------------------------------------------------------------- 248 (400)
Q Consensus 237 ~~~~~~~~~~~~-------------------------------------------------------------------- 248 (400)
++..+++.....
T Consensus 246 iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q 325 (652)
T KOG2376|consen 246 IYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQ 325 (652)
T ss_pred HHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 444444332110
Q ss_pred ------------CHHhHHHHHHHHHh--cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH-----
Q 040367 249 ------------NAFVYNTLMDGFCL--TGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYG----- 309 (400)
Q Consensus 249 ------------~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~----- 309 (400)
....+..++..+.+ ...+..+..++....+........+.-.+++.....|+++.|.+++.
T Consensus 326 ~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~ 405 (652)
T KOG2376|consen 326 VRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLES 405 (652)
T ss_pred HHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 01111222221111 11244555555555444322223455566777788999999999988
Q ss_pred ---HHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHc--CCCCC----HHHHHHHHHHHHhcCcHHHHHHHHHH
Q 040367 310 ---EMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRD--GVAAD----TWTYRTFIDGLCKNSYIVEAVELFRT 380 (400)
Q Consensus 310 ---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~ 380 (400)
.+.+.+.. +.+...+...+.+.++-+.|..++.++.+. .-.+. ..++..+...-.+.|+-++|..++++
T Consensus 406 ~~ss~~~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~lee 483 (652)
T KOG2376|consen 406 WKSSILEAKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEE 483 (652)
T ss_pred hhhhhhhhccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHH
Confidence 44444443 344566677777777777777777776542 00111 22334444445677999999999999
Q ss_pred HHHhcccchhHHHHHHhhcC
Q 040367 381 LRILKCELDIRAYNCLIDGL 400 (400)
Q Consensus 381 ~~~~~~~p~~~~~~~ll~~~ 400 (400)
+.+.. ++|..+...++.+|
T Consensus 484 l~k~n-~~d~~~l~~lV~a~ 502 (652)
T KOG2376|consen 484 LVKFN-PNDTDLLVQLVTAY 502 (652)
T ss_pred HHHhC-CchHHHHHHHHHHH
Confidence 98754 67777777776553
No 73
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.40 E-value=1.3e-09 Score=90.15 Aligned_cols=226 Identities=11% Similarity=0.012 Sum_probs=159.2
Q ss_pred cchHHHHHHHHHHHhCC-CCC--ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHH
Q 040367 159 GFVDKAKELFLQMKDEN-INP--DVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEAS 235 (400)
Q Consensus 159 ~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 235 (400)
+..+.++..+.++.... ..| ....|..+...+...|++++|...|++..+.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 34566777777776532 122 24567788888999999999999999999874 557889999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 040367 236 RLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKG 315 (400)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 315 (400)
..|++..+... .+..++..+..++...|++++|...++...+.. |+..........+...+++++|.+.+.+.....
T Consensus 119 ~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELDP-TYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 99999998642 246777888889999999999999999998874 333222222233445778999999997766432
Q ss_pred CCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHc---C--CC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcccch
Q 040367 316 IKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRD---G--VA-ADTWTYRTFIDGLCKNSYIVEAVELFRTLRILKCELD 389 (400)
Q Consensus 316 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~--~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 389 (400)
.|+...+ . ......|+...+ +.++.+.+. . .. .....|..+...+.+.|++++|+..|++..+.+ +||
T Consensus 196 -~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~ 269 (296)
T PRK11189 196 -DKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYN 269 (296)
T ss_pred -CccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-Cch
Confidence 2232222 2 222335555444 344444432 1 11 134678899999999999999999999999754 345
Q ss_pred hHHHH
Q 040367 390 IRAYN 394 (400)
Q Consensus 390 ~~~~~ 394 (400)
...+.
T Consensus 270 ~~e~~ 274 (296)
T PRK11189 270 FVEHR 274 (296)
T ss_pred HHHHH
Confidence 55443
No 74
>PF13041 PPR_2: PPR repeat family
Probab=99.40 E-value=9.2e-13 Score=76.46 Aligned_cols=50 Identities=44% Similarity=0.834 Sum_probs=41.1
Q ss_pred CChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 040367 15 PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCK 64 (400)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 64 (400)
||+.+||.++.+|++.|++++|.++|++|.+.|++||..+|+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67788888888888888888888888888888888888888888887763
No 75
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=2.2e-09 Score=87.23 Aligned_cols=278 Identities=14% Similarity=0.040 Sum_probs=151.3
Q ss_pred ccCChhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 040367 29 KNKHYDTVLSLFKRLNST-GLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAA 107 (400)
Q Consensus 29 ~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 107 (400)
-.++...|...+-.+... -++.|++....+..++...|+.++|...|+.....++ -+........-.+.+.|+++...
T Consensus 208 ~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dp-y~i~~MD~Ya~LL~~eg~~e~~~ 286 (564)
T KOG1174|consen 208 FNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANP-DNVEAMDLYAVLLGQEGGCEQDS 286 (564)
T ss_pred HhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCCh-hhhhhHHHHHHHHHhccCHhhHH
Confidence 344444554444433222 2455667777777777777777777777777665421 12222222233344566676666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCc-----------ccchHHHHHHHHHHHhCCC
Q 040367 108 ALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGV-----------EGFVDKAKELFLQMKDENI 176 (400)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----------~~~~~~a~~~~~~~~~~~~ 176 (400)
.+...+.... .-+...|..-+.......++..|+.+-++.+..++.... .++.++|.-.|+......
T Consensus 287 ~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La- 364 (564)
T KOG1174|consen 287 ALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA- 364 (564)
T ss_pred HHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-
Confidence 6666655432 233444444455555666677777777766554332111 334444444444444332
Q ss_pred CCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHH-HhCCChHHHHHHHHHHHHcCCCCC-HHhH
Q 040367 177 NPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIM-DEL-CKNGKMDEASRLLDLMIQIGVRPN-AFVY 253 (400)
Q Consensus 177 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~-~~~~~~~~a~~~~~~~~~~~~~~~-~~~~ 253 (400)
|-+..+|..|+.+|...|.+.+|...-+...+. .+.+..+...+. ..+ ....--++|.+++++.+.. .|+ ....
T Consensus 365 p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV 441 (564)
T KOG1174|consen 365 PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAV 441 (564)
T ss_pred hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHH
Confidence 345566666666666666666666655554433 233444444331 122 2223345566666665553 232 2334
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 040367 254 NTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSK 314 (400)
Q Consensus 254 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 314 (400)
+.+...+...|..+.++.+++..... .||....+.|.+.+...+.+++|++.|..+.+.
T Consensus 442 ~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 442 NLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 45555666666666666666666554 456666666666666666666666666666654
No 76
>PF13041 PPR_2: PPR repeat family
Probab=99.39 E-value=9e-13 Score=76.51 Aligned_cols=47 Identities=38% Similarity=0.638 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcccchhHHHHHHhhc
Q 040367 353 ADTWTYRTFIDGLCKNSYIVEAVELFRTLRILKCELDIRAYNCLIDG 399 (400)
Q Consensus 353 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~ 399 (400)
||..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.||++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~ 47 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILING 47 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 44455555555555555555555555555555555555555555544
No 77
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.38 E-value=4.4e-08 Score=84.38 Aligned_cols=344 Identities=15% Similarity=0.102 Sum_probs=179.7
Q ss_pred HhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHH
Q 040367 27 LAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEA 106 (400)
Q Consensus 27 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 106 (400)
+..-|+-++|........+..+ -+..+|..+.-.+-..+++++|+..|..+...+ +.|...+.-+.-.-++.++++..
T Consensus 51 L~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~ 128 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGY 128 (700)
T ss_pred hhcccchHHHHHHHHHHhccCc-ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhH
Confidence 4445555666665555554332 245555555555555566666666666665553 33444555444444555555555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCc-------------------ccchHHHHHH
Q 040367 107 AALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGV-------------------EGFVDKAKEL 167 (400)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------------~~~~~~a~~~ 167 (400)
......+.+.. +.....|..+..++.-.|+...|..+++...+....... .|..+.|.+.
T Consensus 129 ~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~ 207 (700)
T KOG1156|consen 129 LETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEH 207 (700)
T ss_pred HHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 54444444331 223444555555666666666666666665544321111 3333333333
Q ss_pred HHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhCCChHH-------------
Q 040367 168 FLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVI-MDELCKNGKMDE------------- 233 (400)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~------------- 233 (400)
+...... +-.....-..-...+.+.++.++|..++..++... ||..-|... ..++.+-.+.-+
T Consensus 208 L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y 284 (700)
T KOG1156|consen 208 LLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY 284 (700)
T ss_pred HHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC
Confidence 3332211 00011112223345556666666666666666542 444433332 223322212122
Q ss_pred ----------------------HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh--------cC---
Q 040367 234 ----------------------ASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMES--------MG--- 280 (400)
Q Consensus 234 ----------------------a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~--- 280 (400)
...++....+.|++ .++..+...|-.-...+ +++++.. .+
T Consensus 285 ~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p---~vf~dl~SLyk~p~k~~----~le~Lvt~y~~~L~~~~~f~ 357 (700)
T KOG1156|consen 285 PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVP---SVFKDLRSLYKDPEKVA----FLEKLVTSYQHSLSGTGMFN 357 (700)
T ss_pred cccccchhccHHHhCcchhHHHHHHHHHHHhhcCCC---chhhhhHHHHhchhHhH----HHHHHHHHHHhhcccccCCC
Confidence 22233333333332 22333333332211111 2222211 00
Q ss_pred -------CCCChhhH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc-hhhHHHHHHHHHhhCcHHHHHHHHHHHHHcC
Q 040367 281 -------CTHTVFSY--SILINGYCKNKEIEGALSLYGEMLSKGIKPD-VVIYNTLFVVLFEIHQVERAFKLFDEMQRDG 350 (400)
Q Consensus 281 -------~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 350 (400)
-+|....| ..+++.+-..|+++.|..+++.++.+ .|+ ...|..-.+.+...|++++|..++++..+..
T Consensus 358 ~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD 435 (700)
T KOG1156|consen 358 FLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD 435 (700)
T ss_pred cccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Confidence 14444444 45677788899999999999999886 333 3345555677888999999999999988763
Q ss_pred CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcc
Q 040367 351 VAADTWTYRTFIDGLCKNSYIVEAVELFRTLRILKC 386 (400)
Q Consensus 351 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 386 (400)
.+|...=..-+.-..++++.++|.++.....+.|.
T Consensus 436 -~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 436 -TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred -chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 34554444556666788889999988888877664
No 78
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.37 E-value=3.6e-09 Score=79.37 Aligned_cols=210 Identities=15% Similarity=0.037 Sum_probs=173.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 040367 182 TYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFC 261 (400)
Q Consensus 182 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 261 (400)
+...+.-.|...|+...|..-+++.++++ +.+..++..+...|-+.|+.+.|.+.|++..+.. +-+..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 45567778999999999999999999975 5567789999999999999999999999999874 336778889999999
Q ss_pred hcCCHHHHHHHHHHHHhcCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHH
Q 040367 262 LTGRVNRAKELFVSMESMGC-THTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAF 340 (400)
Q Consensus 262 ~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 340 (400)
..|++++|...|++...... ..-..+|..+.-+..+.|+.+.|.+.|++.++.... ...+...+.......|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 99999999999999887422 224567889999999999999999999999998533 4566778888889999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcccchhHHHHHHh
Q 040367 341 KLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTLRILKCELDIRAYNCLI 397 (400)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll 397 (400)
..++.....+. ++..+....|+.--..|+-+.+-++=..+.. .-|....+..++
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r--~fP~s~e~q~f~ 247 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR--LFPYSEEYQTFL 247 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCcHHHHhHh
Confidence 99999988755 7888888888888889999888776666654 356666665543
No 79
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.36 E-value=3.8e-08 Score=84.62 Aligned_cols=310 Identities=8% Similarity=-0.046 Sum_probs=171.7
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC-CCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 040367 52 LYTYNILINCFCKMGRVSHGFVVLGRILRSCF-TPNA-VTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLI 129 (400)
Q Consensus 52 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 129 (400)
...|..+...+...|+.+.+...+....+... .++. .........+...|++++|.+.+++..+.. |.+...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-h
Confidence 34455555666666666666555555544321 1121 112222334556777888888877777653 334434332 2
Q ss_pred HHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 040367 130 NGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQ 209 (400)
Q Consensus 130 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 209 (400)
..+...|+...+ ...+.+.++. .....+........+...+...|++++|...+++..+.
T Consensus 84 ~~~~~~~~~~~~-------------------~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~ 143 (355)
T cd05804 84 LGAFGLGDFSGM-------------------RDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL 143 (355)
T ss_pred HHHHHhcccccC-------------------chhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 233333322111 2222222222 11112233344455666788889999999999998886
Q ss_pred CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC-CCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCh
Q 040367 210 GVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVR-PNA--FVYNTLMDGFCLTGRVNRAKELFVSMESMGC-THTV 285 (400)
Q Consensus 210 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~ 285 (400)
. +.+...+..+...+...|++++|...+++....... ++. ..+..+...+...|++++|..++++...... .+..
T Consensus 144 ~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~ 222 (355)
T cd05804 144 N-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPA 222 (355)
T ss_pred C-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChH
Confidence 4 445667777888888899999999998888775321 222 2345677788888999999999988764321 1111
Q ss_pred hhH-H--HHHHHHHhcCCHHHHHHH--HHHHHhCCCC--CchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCC------
Q 040367 286 FSY-S--ILINGYCKNKEIEGALSL--YGEMLSKGIK--PDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVA------ 352 (400)
Q Consensus 286 ~~~-~--~l~~~~~~~~~~~~a~~~--~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------ 352 (400)
... + .++.-+...|....+.++ +........+ ...........++...|+.+.|..+++.+......
T Consensus 223 ~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 302 (355)
T cd05804 223 LDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQ 302 (355)
T ss_pred HHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhh
Confidence 111 1 222233334433332222 1111111111 11122224566777889999999999888753211
Q ss_pred --CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Q 040367 353 --ADTWTYRTFIDGLCKNSYIVEAVELFRTLRIL 384 (400)
Q Consensus 353 --~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 384 (400)
...........++...|++++|.+.+...+..
T Consensus 303 ~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 303 PARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred hHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 01222223334566889999999999888754
No 80
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.36 E-value=4.9e-09 Score=86.77 Aligned_cols=227 Identities=11% Similarity=-0.047 Sum_probs=144.3
Q ss_pred CCHHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCC
Q 040367 101 SRIMEAAALFTKLRVFG-CEP--NVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENIN 177 (400)
Q Consensus 101 ~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 177 (400)
+..+.++.-+.++.... ..| ....|..+...+...|+.+.|...|++.. +.. |
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al-----------------------~l~-P 95 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQAL-----------------------ALR-P 95 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH-----------------------HcC-C
Confidence 45566666676666532 122 24557777778888888665555554443 332 4
Q ss_pred CChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 040367 178 PDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLM 257 (400)
Q Consensus 178 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 257 (400)
.+...|+.+...+...|++++|...|++..+.. +.+..++..+..++...|++++|.+.+++..+.. |+........
T Consensus 96 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~ 172 (296)
T PRK11189 96 DMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWL 172 (296)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 467788888889999999999999999988764 3356677778888888899999999999988763 3322122222
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCC---CchhhHHHHHHHHH
Q 040367 258 DGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSK---GIK---PDVVIYNTLFVVLF 331 (400)
Q Consensus 258 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~---~~~~~~~~l~~~~~ 331 (400)
......+++++|...+.+..... .++...+ .+ .....|+...+ +.+..+.+. .+. .....|..+...+.
T Consensus 173 ~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~ 247 (296)
T PRK11189 173 YLAESKLDPKQAKENLKQRYEKL-DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYL 247 (296)
T ss_pred HHHHccCCHHHHHHHHHHHHhhC-CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 23445678899999887655432 2332222 22 22334555443 244444321 111 12357888888899
Q ss_pred hhCcHHHHHHHHHHHHHcCCCCCHHHHHH
Q 040367 332 EIHQVERAFKLFDEMQRDGVAADTWTYRT 360 (400)
Q Consensus 332 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 360 (400)
..|++++|+..|++..+.. +|+..-+..
T Consensus 248 ~~g~~~~A~~~~~~Al~~~-~~~~~e~~~ 275 (296)
T PRK11189 248 SLGDLDEAAALFKLALANN-VYNFVEHRY 275 (296)
T ss_pred HCCCHHHHHHHHHHHHHhC-CchHHHHHH
Confidence 9999999999999998763 335444443
No 81
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.36 E-value=4.5e-09 Score=78.82 Aligned_cols=200 Identities=13% Similarity=-0.013 Sum_probs=119.3
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 040367 54 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLY 133 (400)
Q Consensus 54 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 133 (400)
+...+.-.|...|+...|..-+++.++.+ +.+..+|..+...|.+.|+.+.|.+.|++..... +-+..+.|.....++
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 34455556666777777777777776664 2345566666666667777777777777666553 345566666666666
Q ss_pred hcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 040367 134 RTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQP 213 (400)
Q Consensus 134 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 213 (400)
..|++++|...|++..... ...-...+|..+.-+..+.|+++.|...|++.++.+ +-
T Consensus 115 ~qg~~~eA~q~F~~Al~~P----------------------~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~ 171 (250)
T COG3063 115 AQGRPEEAMQQFERALADP----------------------AYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQ 171 (250)
T ss_pred hCCChHHHHHHHHHHHhCC----------------------CCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cC
Confidence 6666555555555543321 112223456666666666677777777776666653 22
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 040367 214 NVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESM 279 (400)
Q Consensus 214 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 279 (400)
...+...+.....+.|++-.|...++.....+. ++..+....|..-...|+.+.+-+.=.++.+.
T Consensus 172 ~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 172 FPPALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred CChHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 334455556666666666666666666665543 56666666666666666666665555555443
No 82
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=1.3e-08 Score=85.63 Aligned_cols=358 Identities=13% Similarity=0.070 Sum_probs=220.1
Q ss_pred HHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCCH
Q 040367 25 GCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPN-AVTFTSLIKGLCAESRI 103 (400)
Q Consensus 25 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~ 103 (400)
.+.+..|+++.|+..|.+..... ++|...|..-..+|...|++++|++=-.+..+. .|+ ...|.-...++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 45677888999999998888775 557778888888888889888888776666655 344 44677788888888899
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh------------------------HHHHH-HHHHHHcCCCCCCcc
Q 040367 104 MEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHT------------------------IVALN-LFEEMASGNGEFGVE 158 (400)
Q Consensus 104 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------------------------~~a~~-~~~~~~~~~~~~~~~ 158 (400)
++|+.-|.+-++.. +.+...+..+..++...... +.+.. +++.+..........
T Consensus 87 ~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 99988888877663 33555666666655211000 00000 011110000000000
Q ss_pred cchHHHHHHHHHHHh---------------CCCCC----------------------ChHhHHHHHHHHHhcCCHHHHHH
Q 040367 159 GFVDKAKELFLQMKD---------------ENINP----------------------DVVTYTSVIRGFCYANDWNEAKC 201 (400)
Q Consensus 159 ~~~~~a~~~~~~~~~---------------~~~~~----------------------~~~~~~~l~~~~~~~~~~~~a~~ 201 (400)
...+...+..-.+.. .+..| -..-...+.++..+..+++.|++
T Consensus 166 l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q 245 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQ 245 (539)
T ss_pred cccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHH
Confidence 000111000000000 00000 01224556677777888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhH-------HHHHHHHHhcCCHHHHHHHHH
Q 040367 202 LLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVY-------NTLMDGFCLTGRVNRAKELFV 274 (400)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~~~~~~~a~~~~~ 274 (400)
.+....+.. -+..-++....+|...|.+.++...-....+.|.. ...-| ..+..+|.+.++++.++..|.
T Consensus 246 ~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ 322 (539)
T KOG0548|consen 246 HYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQ 322 (539)
T ss_pred HHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHH
Confidence 888887764 34555566666777888877777776666665432 22222 223446666777888888777
Q ss_pred HHHhcCCCCChhh-------------------------HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHH
Q 040367 275 SMESMGCTHTVFS-------------------------YSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVV 329 (400)
Q Consensus 275 ~~~~~~~~~~~~~-------------------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 329 (400)
+.......|+... ...=...+.+.|++..|+..|.+++... +.|...|....-+
T Consensus 323 kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac 401 (539)
T KOG0548|consen 323 KALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAAC 401 (539)
T ss_pred HHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHH
Confidence 7654332332211 1112455667889999999999988876 4478888888889
Q ss_pred HHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcccchhHHH
Q 040367 330 LFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTLRILKCELDIRAY 393 (400)
Q Consensus 330 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 393 (400)
|.+.|.+..|+.=.+..++. -++....|..=..++....++++|.+.|.+.++. .|+..-+
T Consensus 402 ~~kL~~~~~aL~Da~~~ieL-~p~~~kgy~RKg~al~~mk~ydkAleay~eale~--dp~~~e~ 462 (539)
T KOG0548|consen 402 YLKLGEYPEALKDAKKCIEL-DPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--DPSNAEA 462 (539)
T ss_pred HHHHhhHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CchhHHH
Confidence 99999999998888887776 2223445555555666777888888888888874 4555433
No 83
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.34 E-value=1.6e-07 Score=81.05 Aligned_cols=150 Identities=10% Similarity=0.051 Sum_probs=104.0
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhc-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 040367 54 TYNILINCFCKMGRVSHGFVVLGRILRS-CFTPNAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGL 132 (400)
Q Consensus 54 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 132 (400)
.|...++.+...|+.......|++.+.. .+.....+|...+......+-++.+..+|++.++. ++..-+-.+..+
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L 179 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYL 179 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHH
Confidence 4555556666778888888888877664 22334557888888888888888999999998854 455577788888
Q ss_pred HhcCChHHHHHHHHHHHcCCCCCCcccch-----HH----------------HHHHHHHHHhCCCCCC--hHhHHHHHHH
Q 040367 133 YRTGHTIVALNLFEEMASGNGEFGVEGFV-----DK----------------AKELFLQMKDENINPD--VVTYTSVIRG 189 (400)
Q Consensus 133 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~----------------a~~~~~~~~~~~~~~~--~~~~~~l~~~ 189 (400)
.+.++.++|.+.+..+...+...+..|.. .+ ...+++.+... -+| ...|.+|.+.
T Consensus 180 ~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 180 AKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADY 257 (835)
T ss_pred HhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHH
Confidence 99999999999999888766544442221 11 11222222221 122 3468899999
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 040367 190 FCYANDWNEAKCLLIEMMDQ 209 (400)
Q Consensus 190 ~~~~~~~~~a~~~~~~~~~~ 209 (400)
|.+.|.+++|..+|++.+..
T Consensus 258 YIr~g~~ekarDvyeeai~~ 277 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQT 277 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHh
Confidence 99999999999999887754
No 84
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.33 E-value=2e-09 Score=83.79 Aligned_cols=292 Identities=11% Similarity=0.084 Sum_probs=169.7
Q ss_pred hHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHH-HHHHH
Q 040367 19 SFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTS-LIKGL 97 (400)
Q Consensus 19 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~ 97 (400)
-+..++..+.+..++..|++++..-.++. +.+......+..+|....++..|-+.|+++... .|...-|.. -.+.+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 36777777788888888888888877764 336777788888888888888888888888765 444444432 23556
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCC
Q 040367 98 CAESRIMEAAALFTKLRVFGCEPNVFTYNTLIN--GLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDEN 175 (400)
Q Consensus 98 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 175 (400)
.+.+.+.+|+.+...|.+. ++...-..-+. .....+++..+..++++ ....+
T Consensus 89 Y~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQ-----------------------lp~en 142 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQ-----------------------LPSEN 142 (459)
T ss_pred HHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHh-----------------------ccCCC
Confidence 6778888888888777642 22211111111 22234454444444443 33222
Q ss_pred CCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-------
Q 040367 176 INPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRP------- 248 (400)
Q Consensus 176 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------- 248 (400)
+..+.+.......+.|+++.|.+-|+...+-+---....|+..+ +..+.|+++.|++...++++.|++.
T Consensus 143 ---~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIG 218 (459)
T KOG4340|consen 143 ---EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIG 218 (459)
T ss_pred ---ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCcc
Confidence 33344444444556677777777777666543222334455444 4455667777777766666654321
Q ss_pred ------CH---------------HhHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCChhhHHHHHHHHHhcCCHHHHHH
Q 040367 249 ------NA---------------FVYNTLMDGFCLTGRVNRAKELFVSMESM-GCTHTVFSYSILINGYCKNKEIEGALS 306 (400)
Q Consensus 249 ------~~---------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~ 306 (400)
|. ..+|.-...+.+.++++.|.+.+..|... ....|+.|...+.-.- ..+++.+..+
T Consensus 219 m~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~ 297 (459)
T KOG4340|consen 219 MTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFE 297 (459)
T ss_pred ceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHH
Confidence 10 11222223345667788887777777432 2234566655444322 2344555555
Q ss_pred HHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHH
Q 040367 307 LYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDE 345 (400)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 345 (400)
-++-+...++- ...||..++-.|++..-++.|.+++-+
T Consensus 298 KLqFLL~~nPf-P~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 298 KLQFLLQQNPF-PPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHHHhcCCC-ChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 55555555443 456777777777787777777777654
No 85
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.31 E-value=8.5e-08 Score=82.48 Aligned_cols=307 Identities=10% Similarity=0.007 Sum_probs=187.3
Q ss_pred ChhhHHHHHHHHhccCChhHHHHHHHHHHhCCC-CCCH-HHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHH
Q 040367 16 PVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGL-FPDL-YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSL 93 (400)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 93 (400)
....|..+...+...|+.+.+...+....+... .++. .........+...|++++|.+.+++..+.. +.+...+..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~- 82 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL- 82 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-
Confidence 566788888888888889888777777655421 1222 223333455678899999999999998874 334444442
Q ss_pred HHHHH----hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHH
Q 040367 94 IKGLC----AESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFL 169 (400)
Q Consensus 94 ~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 169 (400)
...+. ..+....+.+.++... ...+........+...+...|++++|...+++..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al-------------------- 141 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPLWA-PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRAL-------------------- 141 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhccC-cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------------------
Confidence 22222 2455555555555411 1112234455567778889999666666655554
Q ss_pred HHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 040367 170 QMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGV-QPNV--VTFNVIMDELCKNGKMDEASRLLDLMIQIGV 246 (400)
Q Consensus 170 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 246 (400)
+.. +.+...+..+..++...|++++|...+++...... .++. ..|..+...+...|++++|..++++......
T Consensus 142 ---~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 142 ---ELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred ---hhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 332 44567788899999999999999999999887532 1232 3455778889999999999999999865432
Q ss_pred -CCCHHhH-H--HHHHHHHhcCCHHHHHHH--H-HHHHhc-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 040367 247 -RPNAFVY-N--TLMDGFCLTGRVNRAKEL--F-VSMESM-GCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKP 318 (400)
Q Consensus 247 -~~~~~~~-~--~l~~~~~~~~~~~~a~~~--~-~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 318 (400)
.+..... + .++.-+...|....+.+. + ...... ..............++...|+.+.|...+..+......+
T Consensus 218 ~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~ 297 (355)
T cd05804 218 ESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSA 297 (355)
T ss_pred CCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcc
Confidence 1122111 1 223333344433333322 1 111111 001111222356667788999999999998887632110
Q ss_pred --c------hhhHHHHHHHHHhhCcHHHHHHHHHHHHHc
Q 040367 319 --D------VVIYNTLFVVLFEIHQVERAFKLFDEMQRD 349 (400)
Q Consensus 319 --~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 349 (400)
. .........++...|++++|.+.+......
T Consensus 298 ~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 298 DDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred CchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1 111122234456899999999999988754
No 86
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=1.3e-07 Score=80.68 Aligned_cols=363 Identities=15% Similarity=0.132 Sum_probs=217.0
Q ss_pred HHHHhcCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCC
Q 040367 5 DYMLNMRPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFT 84 (400)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 84 (400)
+.++..+|. +..++..-+.++.+.+.+++|+.+.+.-... ..+...+..-..+..+.+..++|+..++-.. +
T Consensus 36 ~Kil~~~pd--d~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~Dealk~~~~~~----~ 107 (652)
T KOG2376|consen 36 NKILSIVPD--DEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKLDEALKTLKGLD----R 107 (652)
T ss_pred HHHHhcCCC--cHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccHHHHHHHHhccc----c
Confidence 445555544 7778888888999999999999766543321 1111111223344557889999998888322 2
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---------------------------CHHHHH---HHHHHHHh
Q 040367 85 PNAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEP---------------------------NVFTYN---TLINGLYR 134 (400)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------------------~~~~~~---~l~~~~~~ 134 (400)
.+..+...-.+.+.+.+++++|.++|+.+.+.+.+. ...+|. ...-.++.
T Consensus 108 ~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~ 187 (652)
T KOG2376|consen 108 LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIE 187 (652)
T ss_pred cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHh
Confidence 244466667788889999999999998885443110 011222 23345667
Q ss_pred cCChHHHHHHHHHHHcCC------CCCC--------------------cccchHHHHHHHHHHHhCCCCCChHhH----H
Q 040367 135 TGHTIVALNLFEEMASGN------GEFG--------------------VEGFVDKAKELFLQMKDENINPDVVTY----T 184 (400)
Q Consensus 135 ~~~~~~a~~~~~~~~~~~------~~~~--------------------~~~~~~~a~~~~~~~~~~~~~~~~~~~----~ 184 (400)
.|++.+|+++++.....+ .+.. ..|+.++|..++...++.+ ++|.... |
T Consensus 188 ~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~N 266 (652)
T KOG2376|consen 188 NGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVN 266 (652)
T ss_pred cccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhc
Confidence 899999999998883211 1111 1888899999888888775 3443221 2
Q ss_pred HHHHHHHhcCCH-H-------------HHHHHHHHHHhC---------------------------CCCCC--HHHHHHH
Q 040367 185 SVIRGFCYANDW-N-------------EAKCLLIEMMDQ---------------------------GVQPN--VVTFNVI 221 (400)
Q Consensus 185 ~l~~~~~~~~~~-~-------------~a~~~~~~~~~~---------------------------~~~~~--~~~~~~l 221 (400)
.++. .....++ + -+......+... ..++. .+.+..+
T Consensus 267 NLva-~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~l 345 (652)
T KOG2376|consen 267 NLVA-LSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPIL 345 (652)
T ss_pred chhh-hccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHH
Confidence 2221 1111110 0 000000000000 01111 1233333
Q ss_pred HHHHHh--CCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH--------HHHhcCCCCChhhHHHH
Q 040367 222 MDELCK--NGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFV--------SMESMGCTHTVFSYSIL 291 (400)
Q Consensus 222 ~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~l 291 (400)
+..+.+ ...+..+..++...-+....-...+.-.++......|+++.|.+++. .+.+.+. .+.+...+
T Consensus 346 l~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~--~P~~V~ai 423 (652)
T KOG2376|consen 346 LQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKH--LPGTVGAI 423 (652)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhcc--ChhHHHHH
Confidence 333322 12456666666666554333234556667778889999999999999 5555543 44556677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC------CCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 040367 292 INGYCKNKEIEGALSLYGEMLSK------GIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGL 365 (400)
Q Consensus 292 ~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 365 (400)
...+.+.++-+.|..++.+.+.. +-..-..++..+...-.+.|+.++|..+++++.+. .++|..+...++.+|
T Consensus 424 v~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~ 502 (652)
T KOG2376|consen 424 VALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAY 502 (652)
T ss_pred HHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHH
Confidence 77788888877777777666542 11111223334444455789999999999999986 467899999999998
Q ss_pred HhcCcHHHHHHHHHHH
Q 040367 366 CKNSYIVEAVELFRTL 381 (400)
Q Consensus 366 ~~~g~~~~a~~~~~~~ 381 (400)
++. +.++|..+-+.+
T Consensus 503 ~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 503 ARL-DPEKAESLSKKL 517 (652)
T ss_pred Hhc-CHHHHHHHhhcC
Confidence 765 566677665554
No 87
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.24 E-value=4.5e-07 Score=72.46 Aligned_cols=190 Identities=9% Similarity=0.023 Sum_probs=85.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHH
Q 040367 189 GFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNR 268 (400)
Q Consensus 189 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 268 (400)
.+.-.|+...|+.....+++.. +.|...+..-..+|...|++..|+.=++...+.. ..+...+..+-..+...|+.+.
T Consensus 164 s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~ 241 (504)
T KOG0624|consen 164 SASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAEN 241 (504)
T ss_pred HHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHH
Confidence 3344555555555555555432 3344455555555555555555555554444432 2233334444444555555555
Q ss_pred HHHHHHHHHhcCCCCChhh-HH---H---H------HHHHHhcCCHHHHHHHHHHHHhCCCCCchhhH---HHHHHHHHh
Q 040367 269 AKELFVSMESMGCTHTVFS-YS---I---L------INGYCKNKEIEGALSLYGEMLSKGIKPDVVIY---NTLFVVLFE 332 (400)
Q Consensus 269 a~~~~~~~~~~~~~~~~~~-~~---~---l------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~ 332 (400)
++...++-.+.+ |+... |. . + +......++|.++.+-.+...+.........+ ..+-.++..
T Consensus 242 sL~~iRECLKld--pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~ 319 (504)
T KOG0624|consen 242 SLKEIRECLKLD--PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYRE 319 (504)
T ss_pred HHHHHHHHHccC--cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccc
Confidence 555554444432 22211 10 0 0 11122334444455444444443222111112 223334445
Q ss_pred hCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 040367 333 IHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTLRI 383 (400)
Q Consensus 333 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 383 (400)
.|++.+|++...+.++. .+.|..++.--..+|.-...++.|+.-|+...+
T Consensus 320 d~~~~eAiqqC~evL~~-d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 320 DEQFGEAIQQCKEVLDI-DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred cCCHHHHHHHHHHHHhc-CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 55555665555555543 122355555555555555555555555555554
No 88
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.23 E-value=2.1e-09 Score=87.65 Aligned_cols=149 Identities=19% Similarity=0.147 Sum_probs=64.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh----cC
Q 040367 189 GFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCL----TG 264 (400)
Q Consensus 189 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 264 (400)
++...|++++|++++... .+.......+.++.+.++++.|.+.++.|.+. ..| .+...+..++.. .+
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCch
Confidence 344445555555544321 23344444455555555555555555555442 112 222223333222 12
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcH-HHHHHHH
Q 040367 265 RVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQV-ERAFKLF 343 (400)
Q Consensus 265 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~ 343 (400)
.+.+|..+|+++.+. .++++.+.+.+..++...|++++|.+++.+..+.+.. ++.+...++.+....|+. +.+.+++
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 355555555554433 1344445555555555555555555555555443322 344444444444444444 3444444
Q ss_pred HHHHH
Q 040367 344 DEMQR 348 (400)
Q Consensus 344 ~~~~~ 348 (400)
.++..
T Consensus 260 ~qL~~ 264 (290)
T PF04733_consen 260 SQLKQ 264 (290)
T ss_dssp HHCHH
T ss_pred HHHHH
Confidence 44443
No 89
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.22 E-value=6.7e-07 Score=77.37 Aligned_cols=352 Identities=14% Similarity=0.127 Sum_probs=235.0
Q ss_pred hhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHH
Q 040367 17 VCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKG 96 (400)
Q Consensus 17 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 96 (400)
...|..++..| ..+++...+.+.+.+.+. .+....+.....-.+...|+.++|....+...+.++ .+...|+.+.-.
T Consensus 8 ~~lF~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~ 84 (700)
T KOG1156|consen 8 NALFRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLL 84 (700)
T ss_pred HHHHHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCc-ccchhHHHHHHH
Confidence 33455555544 568899999988888874 344566666666667788999999999999888764 478899999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCc-----------ccchHHHH
Q 040367 97 LCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGV-----------EGFVDKAK 165 (400)
Q Consensus 97 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----------~~~~~~a~ 165 (400)
+....++++|++.|......+ +.|...|.-+.-.-++.|+++.....-..+.+..+.... .|....|.
T Consensus 85 ~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~ 163 (700)
T KOG1156|consen 85 QRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMAL 163 (700)
T ss_pred HhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999886 667888888888888888888777776666655443322 67788888
Q ss_pred HHHHHHHhCC-CCCChHhHHHHH------HHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhCCChHHHHHH
Q 040367 166 ELFLQMKDEN-INPDVVTYTSVI------RGFCYANDWNEAKCLLIEMMDQGVQPNVVT-FNVIMDELCKNGKMDEASRL 237 (400)
Q Consensus 166 ~~~~~~~~~~-~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~ 237 (400)
.+++...+.. -.|+...+.-.. ......|..+.|.+.+..-... + .|... -..-...+.+.+++++|..+
T Consensus 164 ~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i-~Dkla~~e~ka~l~~kl~~lEeA~~~ 241 (700)
T KOG1156|consen 164 EILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-I-VDKLAFEETKADLLMKLGQLEEAVKV 241 (700)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-H-HHHHHHhhhHHHHHHHHhhHHhHHHH
Confidence 8888887654 245555544332 2345678888888877665443 1 22222 23445677889999999999
Q ss_pred HHHHHHcCCCCCHHhHHH-HHHHHHhcCCHHHHH-HHHHHHHhc----------------------------------CC
Q 040367 238 LDLMIQIGVRPNAFVYNT-LMDGFCLTGRVNRAK-ELFVSMESM----------------------------------GC 281 (400)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~-~~~~~~~~~----------------------------------~~ 281 (400)
+..++.. .||..-|.. +..++.+-.+..++. .+|....+. |+
T Consensus 242 y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~ 319 (700)
T KOG1156|consen 242 YRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGV 319 (700)
T ss_pred HHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCC
Confidence 9999986 355554444 444443233333333 555544322 21
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHH----h----CC----------CCCchhhHH--HHHHHHHhhCcHHHHHH
Q 040367 282 THTVFSYSILINGYCKNKEIEGALSLYGEML----S----KG----------IKPDVVIYN--TLFVVLFEIHQVERAFK 341 (400)
Q Consensus 282 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~----~~----------~~~~~~~~~--~l~~~~~~~~~~~~a~~ 341 (400)
++ ++..+...|-. +.++- +++++. . .| -+|....|. .++..+-..|+++.|..
T Consensus 320 p~---vf~dl~SLyk~---p~k~~-~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~ 392 (700)
T KOG1156|consen 320 PS---VFKDLRSLYKD---PEKVA-FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALE 392 (700)
T ss_pred Cc---hhhhhHHHHhc---hhHhH-HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHH
Confidence 11 12222222221 11111 222222 1 11 145555454 45677889999999999
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhc
Q 040367 342 LFDEMQRDGVAAD-TWTYRTFIDGLCKNSYIVEAVELFRTLRILK 385 (400)
Q Consensus 342 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 385 (400)
+++.++.. .|+ ...|..-.+.+.+.|++++|..++++..+..
T Consensus 393 yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD 435 (700)
T KOG1156|consen 393 YIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD 435 (700)
T ss_pred HHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Confidence 99999986 555 4556666788999999999999999998643
No 90
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.19 E-value=2.6e-09 Score=87.10 Aligned_cols=149 Identities=17% Similarity=0.171 Sum_probs=78.2
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cC
Q 040367 224 ELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCK----NK 299 (400)
Q Consensus 224 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 299 (400)
.+...|++++|++++... .+.......+.+|.+.++++.|.+.++.|.+.+ .| .+...+..++.. ..
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCch
Confidence 444556666666665432 244455555666666666666666666666542 22 223333333332 22
Q ss_pred CHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcH-HHHHHHH
Q 040367 300 EIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYI-VEAVELF 378 (400)
Q Consensus 300 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~ 378 (400)
.+.+|..+|+++.+. +.+++.+.+.+..++...|++++|.+++++..... +-+..+...++-+....|+. +.+.+.+
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 466666666665543 34555666666666666666666666666655432 22455555566555566655 4455555
Q ss_pred HHHHH
Q 040367 379 RTLRI 383 (400)
Q Consensus 379 ~~~~~ 383 (400)
.++..
T Consensus 260 ~qL~~ 264 (290)
T PF04733_consen 260 SQLKQ 264 (290)
T ss_dssp HHCHH
T ss_pred HHHHH
Confidence 55554
No 91
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.19 E-value=3.3e-07 Score=71.74 Aligned_cols=153 Identities=14% Similarity=0.141 Sum_probs=104.9
Q ss_pred ChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHH
Q 040367 16 PVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNI-LINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLI 94 (400)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 94 (400)
+....+.+..+|-...++..|-+.++.+... .|...-|.. -.+.+.+.+.+..|+++...|... ++...-..-+
T Consensus 43 ~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqL 117 (459)
T KOG4340|consen 43 SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQL 117 (459)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHH
Confidence 7888899999999999999999999999876 456555543 356777889999999999888653 2222222222
Q ss_pred --HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCc-----------ccch
Q 040367 95 --KGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGV-----------EGFV 161 (400)
Q Consensus 95 --~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----------~~~~ 161 (400)
......+++..+..+.++.... -+..+.+...-...+.|+++.|.+-|+...+.++-.+. .+++
T Consensus 118 qaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qy 194 (459)
T KOG4340|consen 118 QAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQY 194 (459)
T ss_pred HHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhH
Confidence 2234678888888888887643 35556666666777889988888888777665432211 4555
Q ss_pred HHHHHHHHHHHhCCC
Q 040367 162 DKAKELFLQMKDENI 176 (400)
Q Consensus 162 ~~a~~~~~~~~~~~~ 176 (400)
..|++...+++.+|+
T Consensus 195 asALk~iSEIieRG~ 209 (459)
T KOG4340|consen 195 ASALKHISEIIERGI 209 (459)
T ss_pred HHHHHHHHHHHHhhh
Confidence 555555555555543
No 92
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.16 E-value=1.6e-06 Score=76.67 Aligned_cols=347 Identities=12% Similarity=0.013 Sum_probs=231.3
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHH
Q 040367 45 STGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEP-NVF 123 (400)
Q Consensus 45 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~ 123 (400)
...+..+...|..+.-+....|+++.+.+.|++....-+ -..+.|..+...+...|.-..|..+++.-....-.| +..
T Consensus 316 ~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s 394 (799)
T KOG4162|consen 316 LKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDIS 394 (799)
T ss_pred HhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcch
Confidence 334556888899999999999999999999999886533 367788889999999999999999998776543223 344
Q ss_pred HHHHHHHHHH-hcCChHHHHHHHHHHHcCCCCC---------------------------CcccchHHHHHHHHHHHhCC
Q 040367 124 TYNTLINGLY-RTGHTIVALNLFEEMASGNGEF---------------------------GVEGFVDKAKELFLQMKDEN 175 (400)
Q Consensus 124 ~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~---------------------------~~~~~~~~a~~~~~~~~~~~ 175 (400)
.+...-..|. +.+..++++.+-.++....... .......++++.+++..+.+
T Consensus 395 ~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d 474 (799)
T KOG4162|consen 395 VLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD 474 (799)
T ss_pred HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC
Confidence 4444444444 4467777777777776522100 00334567788888887765
Q ss_pred CCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc-CCC-------
Q 040367 176 INPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQI-GVR------- 247 (400)
Q Consensus 176 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~------- 247 (400)
+.|+....-+.--|+..++.+.|.+..++..+.+-..+...|..+.-.+...+++.+|+.+.+..... |..
T Consensus 475 -~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~ 553 (799)
T KOG4162|consen 475 -PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGK 553 (799)
T ss_pred -CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhh
Confidence 22333333344467888999999999999998866778899999999999999999999998877654 110
Q ss_pred -----------CCHHhHHHHHHHHHhc-----------------------CCHHHHHHHHHHHH--------hcC-----
Q 040367 248 -----------PNAFVYNTLMDGFCLT-----------------------GRVNRAKELFVSME--------SMG----- 280 (400)
Q Consensus 248 -----------~~~~~~~~l~~~~~~~-----------------------~~~~~a~~~~~~~~--------~~~----- 280 (400)
....+...++..+... ++..++....+.+. ..+
T Consensus 554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~L 633 (799)
T KOG4162|consen 554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKL 633 (799)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccccc
Confidence 0011222222222200 11111211111110 000
Q ss_pred ----CCC--C------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHH
Q 040367 281 ----CTH--T------VFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQR 348 (400)
Q Consensus 281 ----~~~--~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 348 (400)
..| + ...|......+...++.++|...+.++.... +.....|......+...|+..+|.+.|.....
T Consensus 634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ 712 (799)
T KOG4162|consen 634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA 712 (799)
T ss_pred CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh
Confidence 011 1 1234556677788888899988888887653 33556677777888889999999999999887
Q ss_pred cCCCCCHHHHHHHHHHHHhcCcHHHHHH--HHHHHHHhcccchhHHHHHH
Q 040367 349 DGVAADTWTYRTFIDGLCKNSYIVEAVE--LFRTLRILKCELDIRAYNCL 396 (400)
Q Consensus 349 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~p~~~~~~~l 396 (400)
.. +.++....++...+.+.|+..-|.. ++..+.+.+ +.+.+.|..|
T Consensus 713 ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~L 760 (799)
T KOG4162|consen 713 LD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYL 760 (799)
T ss_pred cC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 52 2356778899999999998887777 888888754 3345666544
No 93
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.16 E-value=2.5e-08 Score=84.71 Aligned_cols=252 Identities=15% Similarity=0.092 Sum_probs=182.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhC
Q 040367 95 KGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDE 174 (400)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 174 (400)
.-+.+.|++.+|.-.|+..+... |-+...|..|.......++-..|+..++++ .+.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rc-----------------------l~L 348 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRC-----------------------LEL 348 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHH-----------------------Hhc
Confidence 34567888999998998888775 557888888888888888755555554444 443
Q ss_pred CCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH---------HHHHhCCChHHHHHHHHHH-HHc
Q 040367 175 NINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIM---------DELCKNGKMDEASRLLDLM-IQI 244 (400)
Q Consensus 175 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~---------~~~~~~~~~~~a~~~~~~~-~~~ 244 (400)
. |.+......|.-.|...|.-..|.+.++..+....+ -. |.... +.+.....+....++|-++ .+.
T Consensus 349 d-P~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~-y~--~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~ 424 (579)
T KOG1125|consen 349 D-PTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPK-YV--HLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQL 424 (579)
T ss_pred C-CccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcc-ch--hccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhC
Confidence 3 447778888888999999999999999988764311 00 00000 1111112233344444444 444
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc-hhhH
Q 040367 245 GVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPD-VVIY 323 (400)
Q Consensus 245 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~ 323 (400)
+..+|+.+...|.-.|.-.|++++|.+.|+.+.... |.|...||.|...++...+.++|+.-|+++++. .|+ +.+.
T Consensus 425 ~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~R 501 (579)
T KOG1125|consen 425 PTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVR 501 (579)
T ss_pred CCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeee
Confidence 545788889999999999999999999999999886 668889999999999999999999999999986 444 3466
Q ss_pred HHHHHHHHhhCcHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHHHhcCcHHHHHHH
Q 040367 324 NTLFVVLFEIHQVERAFKLFDEMQRD---------GVAADTWTYRTFIDGLCKNSYIVEAVEL 377 (400)
Q Consensus 324 ~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 377 (400)
..|..+|...|.+++|.+.|-.++.. +..++..+|..|=.++...++.|-+.+.
T Consensus 502 yNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 502 YNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 67888999999999999999776532 1122346788887777777877755444
No 94
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.15 E-value=1.1e-06 Score=85.55 Aligned_cols=364 Identities=9% Similarity=-0.025 Sum_probs=198.2
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 040367 20 FNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCA 99 (400)
Q Consensus 20 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 99 (400)
+......+...|++.+|.......... ..-..............|+++.+..+++.+.......+..........+..
T Consensus 344 h~raa~~~~~~g~~~~Al~~a~~a~d~--~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~ 421 (903)
T PRK04841 344 HRAAAEAWLAQGFPSEAIHHALAAGDA--QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQS 421 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCCH--HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHH
Confidence 344455566667766665544332111 000011112223334455555555555544211111122222233334445
Q ss_pred cCCHHHHHHHHHHHHHcC--C----CCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCC---------------
Q 040367 100 ESRIMEAAALFTKLRVFG--C----EPN--VFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFG--------------- 156 (400)
Q Consensus 100 ~~~~~~a~~~~~~~~~~~--~----~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------- 156 (400)
.|+++++..+++...+.- . .+. ......+...+...|+++.|...+++.........
T Consensus 422 ~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~ 501 (903)
T PRK04841 422 QHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVH 501 (903)
T ss_pred CCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH
Confidence 566666666665543320 0 011 11122223344556666666666666544211100
Q ss_pred -cccchHHHHHHHHHHHhC----CC-CCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHH
Q 040367 157 -VEGFVDKAKELFLQMKDE----NI-NPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQ----GVQ--P-NVVTFNVIMD 223 (400)
Q Consensus 157 -~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~ 223 (400)
..|++++|...+.+.... +. .....++..+...+...|+++.|...+++.... +.. + ....+..+..
T Consensus 502 ~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 581 (903)
T PRK04841 502 HCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQ 581 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 155566666666555431 10 111234556667788899999999998886642 211 1 2233445556
Q ss_pred HHHhCCChHHHHHHHHHHHHcC--CCC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-ChhhH-----HHHHH
Q 040367 224 ELCKNGKMDEASRLLDLMIQIG--VRP--NAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTH-TVFSY-----SILIN 293 (400)
Q Consensus 224 ~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~-----~~l~~ 293 (400)
.+...|++++|...+.+..... ..+ ....+..+...+...|+++.|...+.......... ....+ ...+.
T Consensus 582 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 661 (903)
T PRK04841 582 LLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLI 661 (903)
T ss_pred HHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHH
Confidence 6777899999999988876531 111 23344446667788899999999988875431111 11111 11224
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCch---hhHHHHHHHHHhhCcHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHH
Q 040367 294 GYCKNKEIEGALSLYGEMLSKGIKPDV---VIYNTLFVVLFEIHQVERAFKLFDEMQRD----GVAAD-TWTYRTFIDGL 365 (400)
Q Consensus 294 ~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~ 365 (400)
.+...|+.+.|.+.+............ ..+..+..++...|++++|...++++... |..++ ..+...+..++
T Consensus 662 ~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~ 741 (903)
T PRK04841 662 YWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLY 741 (903)
T ss_pred HHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 445678899999887765542211111 11345667788899999999999887753 22222 34566677788
Q ss_pred HhcCcHHHHHHHHHHHHHhc
Q 040367 366 CKNSYIVEAVELFRTLRILK 385 (400)
Q Consensus 366 ~~~g~~~~a~~~~~~~~~~~ 385 (400)
.+.|+.++|...+.+..+..
T Consensus 742 ~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 742 WQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHh
Confidence 89999999999999997643
No 95
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.14 E-value=1.4e-06 Score=69.72 Aligned_cols=318 Identities=13% Similarity=0.079 Sum_probs=216.5
Q ss_pred CChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhH-HHH
Q 040367 15 PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTF-TSL 93 (400)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l 93 (400)
.++.-..-+...+..+|++..|+.-|....+.. +.+-.++-.-...|...|+..-|+.=+.+.++. +||-..- ..-
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR 112 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence 455556667788888999999999998888752 222234444456788899999999989888876 6664432 223
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHh
Q 040367 94 IKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKD 173 (400)
Q Consensus 94 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 173 (400)
...+.+.|.++.|..-|+.+++.. |+..+ ...++.+.--.++-..+.+++.+ ....|+...|+.....+.+
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~--~s~~~---~~eaqskl~~~~e~~~l~~ql~s----~~~~GD~~~ai~~i~~llE 183 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHE--PSNGL---VLEAQSKLALIQEHWVLVQQLKS----ASGSGDCQNAIEMITHLLE 183 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcC--CCcch---hHHHHHHHHhHHHHHHHHHHHHH----HhcCCchhhHHHHHHHHHh
Confidence 356778999999999999998773 32211 11222222222222222222222 1223556777777777776
Q ss_pred CCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHh-
Q 040367 174 ENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFV- 252 (400)
Q Consensus 174 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~- 252 (400)
.. +-|...+..-..+|...|++..|+.-++...+.. ..++.++.-+-..+...|+.+.++...++.++. .|+...
T Consensus 184 i~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~C 259 (504)
T KOG0624|consen 184 IQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLC 259 (504)
T ss_pred cC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhH
Confidence 53 5577778888889999999999999888887754 446667777778888999999999999888875 455332
Q ss_pred ---HHHH---------HHHHHhcCCHHHHHHHHHHHHhcCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 040367 253 ---YNTL---------MDGFCLTGRVNRAKELFVSMESMGCTHT---VFSYSILINGYCKNKEIEGALSLYGEMLSKGIK 317 (400)
Q Consensus 253 ---~~~l---------~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 317 (400)
|..+ +......++|.++.+..+...+...... ...+..+-.++...+++.+|++.-.+.++.. +
T Consensus 260 f~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~ 338 (504)
T KOG0624|consen 260 FPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-P 338 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-c
Confidence 1111 1223455778888888888877642212 2334566677788889999999888888753 2
Q ss_pred CchhhHHHHHHHHHhhCcHHHHHHHHHHHHHc
Q 040367 318 PDVVIYNTLFVVLFEIHQVERAFKLFDEMQRD 349 (400)
Q Consensus 318 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 349 (400)
.|..++.--..+|.-...++.|+.-|+.+.+.
T Consensus 339 ~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 339 DDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 24778888888888888999999988888765
No 96
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.13 E-value=1.6e-07 Score=75.27 Aligned_cols=344 Identities=12% Similarity=0.116 Sum_probs=202.7
Q ss_pred HHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCH
Q 040367 24 FGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRI 103 (400)
Q Consensus 24 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 103 (400)
+.-+..++++..|+.+++.-...+-.....+-..+..++.+.|++++|...|..+.+.. .++...+..|..++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 66778889999999999987765433223344556678889999999999999988754 67788888888888889999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCC-------CCcccchHHHHHHHHHHHhCCC
Q 040367 104 MEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGE-------FGVEGFVDKAKELFLQMKDENI 176 (400)
Q Consensus 104 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~~~~~~a~~~~~~~~~~~~ 176 (400)
.+|.++-.+. +.++-....+.....+.++-++-..+.+.+.....+ .-..-.+++|++++.++...+
T Consensus 108 ~eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn- 181 (557)
T KOG3785|consen 108 IEAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN- 181 (557)
T ss_pred HHHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 9999887653 334455555666667777776666665555332211 001345789999999998763
Q ss_pred CCChHhHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--CCChHHHH--H----------HHHHH
Q 040367 177 NPDVVTYTSVIR-GFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCK--NGKMDEAS--R----------LLDLM 241 (400)
Q Consensus 177 ~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~--~----------~~~~~ 241 (400)
|+....|..+. +|.+..-++-+.++++-.... ++.++...+.......+ +|+..+.+ + ..+.+
T Consensus 182 -~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l 259 (557)
T KOG3785|consen 182 -PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYL 259 (557)
T ss_pred -hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHH
Confidence 55555555444 556777778888888877764 34444444443333222 22221111 0 11112
Q ss_pred HHcCC------------CC-----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHH--------------
Q 040367 242 IQIGV------------RP-----NAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSI-------------- 290 (400)
Q Consensus 242 ~~~~~------------~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------------- 290 (400)
.++++ -| -+..-..|+-.|.++++..+|..+.+++. |.++.-|-.
T Consensus 260 ~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~EyilKgvv~aalGQe~gS 335 (557)
T KOG3785|consen 260 CRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEYILKGVVFAALGQETGS 335 (557)
T ss_pred HHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcC----CCChHHHHHHHHHHHHhhhhcCc
Confidence 22110 00 01122234455778888888888777664 222222211
Q ss_pred -----------------------------HHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHH
Q 040367 291 -----------------------------LINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFK 341 (400)
Q Consensus 291 -----------------------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 341 (400)
+..++.-..++++++..+..+...-.. |....-.+.++.+..|++.+|.+
T Consensus 336 reHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~N-dD~Fn~N~AQAk~atgny~eaEe 414 (557)
T KOG3785|consen 336 REHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTN-DDDFNLNLAQAKLATGNYVEAEE 414 (557)
T ss_pred HHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhHHHHHHHHhcChHHHHH
Confidence 111112222233333333333222111 11222345677777888888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 040367 342 LFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTL 381 (400)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 381 (400)
+|-+.....+..+..--..|.++|.+++.++.|..++-++
T Consensus 415 lf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 415 LFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred HHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 8877765444433333345667788888888886664443
No 97
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.12 E-value=7.9e-08 Score=81.82 Aligned_cols=262 Identities=12% Similarity=0.070 Sum_probs=166.8
Q ss_pred HHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 040367 60 NCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTI 139 (400)
Q Consensus 60 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 139 (400)
.-+.+.|++.+|.-.|+..++.+ +.+...|..|......+++-..|+..+++..+.. +-+..+...|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 34567788888988999888875 4478889999999899998889999998888775 557788888888999988888
Q ss_pred HHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCCHHHH
Q 040367 140 VALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMM-DQGVQPNVVTF 218 (400)
Q Consensus 140 ~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~ 218 (400)
.|++.++.=+...+.+.....- .-... ..+. ..+.....+....++|-++. ..+..+|+.+.
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a--------~~~~~-~~~~--------~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ 433 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSA--------GENED-FENT--------KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQ 433 (579)
T ss_pred HHHHHHHHHHHhCccchhcccc--------Ccccc-ccCC--------cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHH
Confidence 8887777654443322110000 00000 0000 01111112233334444433 33334666677
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 040367 219 NVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKN 298 (400)
Q Consensus 219 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 298 (400)
..|.-.|.-.|++++|...|+.++... +-|..+||.|...+....+..+|+..|.+..+.. |--+.+...|.-+|...
T Consensus 434 ~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq-P~yVR~RyNlgIS~mNl 511 (579)
T KOG1125|consen 434 SGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ-PGYVRVRYNLGISCMNL 511 (579)
T ss_pred hhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC-CCeeeeehhhhhhhhhh
Confidence 777777777778888888888777753 2356777777777777777888888888777763 22344555666677788
Q ss_pred CCHHHHHHHHHHHHhC---------CCCCchhhHHHHHHHHHhhCcHHHHHHH
Q 040367 299 KEIEGALSLYGEMLSK---------GIKPDVVIYNTLFVVLFEIHQVERAFKL 342 (400)
Q Consensus 299 ~~~~~a~~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 342 (400)
|.+++|.+.|-.++.. +..++...|..|=.++.-.++.|.+.+.
T Consensus 512 G~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 512 GAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 8888877776655431 1122345666666666666666654443
No 98
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.10 E-value=8.5e-08 Score=83.87 Aligned_cols=191 Identities=10% Similarity=0.099 Sum_probs=155.4
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 040367 181 VTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGF 260 (400)
Q Consensus 181 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 260 (400)
..|..++.+|...|+..+|..+..+..++ +||+..|..+.+......-+++|.++.+..... .-..+....
T Consensus 425 emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~ 495 (777)
T KOG1128|consen 425 EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLI 495 (777)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhcccc
Confidence 35777888999999999999999888873 688888888888877777788888888765432 222333334
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHH
Q 040367 261 CLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAF 340 (400)
Q Consensus 261 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 340 (400)
.+.++++++.+.|+.-.+.+ +....+|-.+..+..+.++++.|.+.|....... +.+...||.+-.+|.+.++..+|.
T Consensus 496 ~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~ 573 (777)
T KOG1128|consen 496 LSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAF 573 (777)
T ss_pred ccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHH
Confidence 45789999999999888776 5677888888888899999999999999888753 336789999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 040367 341 KLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTLRI 383 (400)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 383 (400)
..+.++.+.+ .-+...|...+....+-|.+++|++.+.++..
T Consensus 574 ~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 574 RKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 9999999876 44667788888888899999999999998863
No 99
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.09 E-value=1e-07 Score=73.43 Aligned_cols=154 Identities=10% Similarity=0.126 Sum_probs=100.8
Q ss_pred HHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 040367 131 GLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQG 210 (400)
Q Consensus 131 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 210 (400)
.|...|+++......+.+......+...+..+++...++.....+ +.+...|..+...|...|++++|...|++..+..
T Consensus 25 ~Y~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~ 103 (198)
T PRK10370 25 SYLLSPKWQAVRAEYQRLADPLHQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR 103 (198)
T ss_pred HHHHcchHHHHHHHHHHHhCccccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 455555555544443333222222223444566666666666554 5677788888888888888888888888887764
Q ss_pred CCCCHHHHHHHHHHH-HhCCC--hHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhh
Q 040367 211 VQPNVVTFNVIMDEL-CKNGK--MDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFS 287 (400)
Q Consensus 211 ~~~~~~~~~~l~~~~-~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 287 (400)
+.+...+..+..++ ...|+ .++|.+++++..+.+. .+...+..+...+...|++++|...|+++.+.. +|+..-
T Consensus 104 -P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP-~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~r 180 (198)
T PRK10370 104 -GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDA-NEVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVNR 180 (198)
T ss_pred -CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCccH
Confidence 44666777776653 56666 4788888888887643 356677777778888888888888888887765 444443
Q ss_pred H
Q 040367 288 Y 288 (400)
Q Consensus 288 ~ 288 (400)
+
T Consensus 181 ~ 181 (198)
T PRK10370 181 T 181 (198)
T ss_pred H
Confidence 3
No 100
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.07 E-value=1.1e-07 Score=88.87 Aligned_cols=209 Identities=15% Similarity=0.113 Sum_probs=172.3
Q ss_pred CCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH
Q 040367 177 NPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQP-----NVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAF 251 (400)
Q Consensus 177 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 251 (400)
|.+...|-..|......++.++|.++.++++.. +.+ -...|.++++.-..-|.-+...++|+++.+.. ....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHH
Confidence 556778999999999999999999999998864 222 22467777777777788899999999998852 2456
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CchhhHHHHHHHH
Q 040367 252 VYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIK-PDVVIYNTLFVVL 330 (400)
Q Consensus 252 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~ 330 (400)
+|..|...|.+.+.+++|.++++.|.+.- ......|...+..+.+..+-+.|..++.++.+.-++ -........+..-
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 78899999999999999999999998864 367888999999999999999999999998875222 1344555666677
Q ss_pred HhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcccchh
Q 040367 331 FEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTLRILKCELDI 390 (400)
Q Consensus 331 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 390 (400)
.+.|+.+++..+|+..... .+-....|+.+++.-.++|+.+.+..+|++....++.|..
T Consensus 1611 Fk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kk 1669 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKK 1669 (1710)
T ss_pred hhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhH
Confidence 7899999999999999876 3446889999999999999999999999999998887753
No 101
>PLN02789 farnesyltranstransferase
Probab=99.04 E-value=1.3e-06 Score=72.37 Aligned_cols=241 Identities=9% Similarity=0.006 Sum_probs=168.0
Q ss_pred CChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCC
Q 040367 136 GHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYAN-DWNEAKCLLIEMMDQGVQPN 214 (400)
Q Consensus 136 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~ 214 (400)
+++.+|..+|+.+...+. ..++|+.+..+++..+ |-+..+|+.-..++...| ++++++..++++.+.+ +.+
T Consensus 34 ~~~~~a~~~~ra~l~~~e------~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pkn 105 (320)
T PLN02789 34 PEFREAMDYFRAVYASDE------RSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKN 105 (320)
T ss_pred HHHHHHHHHHHHHHHcCC------CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-Ccc
Confidence 344555555555544332 2667777777777654 445556666666666777 6799999999998864 345
Q ss_pred HHHHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 040367 215 VVTFNVIMDELCKNGKM--DEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILI 292 (400)
Q Consensus 215 ~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 292 (400)
..+|+.-...+.+.|.. +++..+++++++... -+..+|+....++...|+++++++.+.++.+.+ +.|...|+...
T Consensus 106 yqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~ 183 (320)
T PLN02789 106 YQIWHHRRWLAEKLGPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRY 183 (320)
T ss_pred hHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHH
Confidence 55666555555566653 678888888888753 478888888888889999999999999999887 55777787776
Q ss_pred HHHHhc---CC----HHHHHHHHHHHHhCCCCCchhhHHHHHHHHHh----hCcHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 040367 293 NGYCKN---KE----IEGALSLYGEMLSKGIKPDVVIYNTLFVVLFE----IHQVERAFKLFDEMQRDGVAADTWTYRTF 361 (400)
Q Consensus 293 ~~~~~~---~~----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 361 (400)
..+.+. |. .++.+++..+++...+ -|...|+.+...+.. .++..+|.+.+.+..+.+ +.+......|
T Consensus 184 ~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l 261 (320)
T PLN02789 184 FVITRSPLLGGLEAMRDSELKYTIDAILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDL 261 (320)
T ss_pred HHHHhccccccccccHHHHHHHHHHHHHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHH
Confidence 665554 22 2467777778887654 377888888877766 244567888888877653 3367778888
Q ss_pred HHHHHhcC------------------cHHHHHHHHHHHHHhcccchh
Q 040367 362 IDGLCKNS------------------YIVEAVELFRTLRILKCELDI 390 (400)
Q Consensus 362 ~~~~~~~g------------------~~~~a~~~~~~~~~~~~~p~~ 390 (400)
++.|+... ..++|.++++.+. ...|=.
T Consensus 262 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~--~~d~ir 306 (320)
T PLN02789 262 LDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE--VADPMR 306 (320)
T ss_pred HHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH--hhCcHH
Confidence 88887632 3477888888884 344533
No 102
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.03 E-value=4.2e-06 Score=81.55 Aligned_cols=310 Identities=11% Similarity=0.007 Sum_probs=172.4
Q ss_pred HHHHhccCChhHHHHHHHHHHhCC--C----CCC--HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCh----hhHH
Q 040367 24 FGCLAKNKHYDTVLSLFKRLNSTG--L----FPD--LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNA----VTFT 91 (400)
Q Consensus 24 ~~~~~~~~~~~~a~~~~~~~~~~~--~----~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~ 91 (400)
...+...|++++|..+++.....- . .+. ......+...+...|++++|...++.........+. ...+
T Consensus 416 a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 495 (903)
T PRK04841 416 AWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATS 495 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 334445566666666666553320 0 011 111122223344566666666666665542111111 1233
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC---CC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHH
Q 040367 92 SLIKGLCAESRIMEAAALFTKLRVFGC---EP--NVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKE 166 (400)
Q Consensus 92 ~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~ 166 (400)
.+...+...|++++|...+++.....- .+ ...++..+...+...|+++.|...+++. ..
T Consensus 496 ~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~a----------------l~ 559 (903)
T PRK04841 496 VLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKA----------------FQ 559 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH----------------HH
Confidence 444455566666666666665543210 11 1223344455566666666666554443 22
Q ss_pred HHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCC--CHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 040367 167 LFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQG--VQP--NVVTFNVIMDELCKNGKMDEASRLLDLMI 242 (400)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 242 (400)
+.+.............+..+...+...|++++|...+.+..... ..+ ....+..+...+...|+++.|...+.++.
T Consensus 560 ~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~ 639 (903)
T PRK04841 560 LIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLE 639 (903)
T ss_pred HHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 22111100001122334555667778899999999998876431 112 23344456667788999999999998886
Q ss_pred HcCCCCC-HHhH-----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040367 243 QIGVRPN-AFVY-----NTLMDGFCLTGRVNRAKELFVSMESMGCTHTV---FSYSILINGYCKNKEIEGALSLYGEMLS 313 (400)
Q Consensus 243 ~~~~~~~-~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 313 (400)
....... ...+ ...+..+...|+.+.|...+............ ..+..+..++...|++++|...++++..
T Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~ 719 (903)
T PRK04841 640 NLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNE 719 (903)
T ss_pred HHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5311111 1111 11224455678999999988776542211111 1134567778889999999999988775
Q ss_pred C----CCCCc-hhhHHHHHHHHHhhCcHHHHHHHHHHHHHc
Q 040367 314 K----GIKPD-VVIYNTLFVVLFEIHQVERAFKLFDEMQRD 349 (400)
Q Consensus 314 ~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 349 (400)
. |..++ ..+...+..++...|+.++|...+.++.+.
T Consensus 720 ~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 720 NARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3 32221 235566678888999999999999998875
No 103
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.02 E-value=6.8e-07 Score=83.86 Aligned_cols=235 Identities=9% Similarity=0.052 Sum_probs=139.5
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhc-CCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 040367 49 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRS-CFTP---NAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFT 124 (400)
Q Consensus 49 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 124 (400)
|.+...|-..|......++.+.|+++.++++.. ++.- -...|.+++..-..-|.-+...++|+++.+. .-....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 334456666677777777777777777776653 1111 1224555555555556666666777776654 223445
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHH
Q 040367 125 YNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLI 204 (400)
Q Consensus 125 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 204 (400)
|..|...|.+.+.+++|.++++.|.+.- ......|..++..+.+.++-++|..++.
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF------------------------~q~~~vW~~y~~fLl~~ne~~aa~~lL~ 1588 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKF------------------------GQTRKVWIMYADFLLRQNEAEAARELLK 1588 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHh------------------------cchhhHHHHHHHHHhcccHHHHHHHHHH
Confidence 6667777777777777777777774421 1234566667777777777777777777
Q ss_pred HHHhCCCCC--CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 040367 205 EMMDQGVQP--NVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCT 282 (400)
Q Consensus 205 ~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 282 (400)
++++. .+- ........+..-.+.|+.+.+..+|+-.+... +-....|+..++.-.+.|+.+.++.+|+++...++.
T Consensus 1589 rAL~~-lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1589 RALKS-LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred HHHhh-cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 76654 111 12233344445556677777777777666652 234556777777777777777777777777766554
Q ss_pred CC--hhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 040367 283 HT--VFSYSILINGYCKNKEIEGALSLYGEM 311 (400)
Q Consensus 283 ~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~ 311 (400)
|. ...|...+..--+.|+-+.+..+=.++
T Consensus 1667 ~kkmKfffKkwLeyEk~~Gde~~vE~VKarA 1697 (1710)
T KOG1070|consen 1667 IKKMKFFFKKWLEYEKSHGDEKNVEYVKARA 1697 (1710)
T ss_pred hhHhHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 43 234555555555556655444443333
No 104
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.99 E-value=2.3e-07 Score=71.51 Aligned_cols=119 Identities=11% Similarity=0.067 Sum_probs=72.4
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH-HhcCC--HHHH
Q 040367 228 NGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGY-CKNKE--IEGA 304 (400)
Q Consensus 228 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a 304 (400)
.++.+++...++...+.+ +.+...|..+...|...|++++|...|++..+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 455556666666655543 3356666666666666666666666666666654 44555666666543 45454 3666
Q ss_pred HHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHc
Q 040367 305 LSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRD 349 (400)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 349 (400)
.+++++..+.+.. +...+..+...+...|++++|+..|+++.+.
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6666666665433 5556666666666666666666666666665
No 105
>PLN02789 farnesyltranstransferase
Probab=98.98 E-value=3.8e-06 Score=69.69 Aligned_cols=126 Identities=8% Similarity=-0.014 Sum_probs=66.9
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChhhHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 040367 20 FNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG-RVSHGFVVLGRILRSCFTPNAVTFTSLIKGLC 98 (400)
Q Consensus 20 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 98 (400)
+..+-..+...+..++|+.+.+++.+.. +-+..+|+....++...| ++++++..++.+.+.+. .+..+|+.....+.
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~ 117 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHH
Confidence 3444445555666666666666666653 223344555545555555 45666666666665542 24445554444444
Q ss_pred hcCCH--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 040367 99 AESRI--MEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEM 148 (400)
Q Consensus 99 ~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 148 (400)
+.|+. ++++.+++++.+.. +-+..+|+....++...|+++++++.++++
T Consensus 118 ~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~ 168 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQL 168 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 44442 45566666665554 345566666665555555544444443333
No 106
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.98 E-value=4.7e-07 Score=69.71 Aligned_cols=164 Identities=13% Similarity=0.050 Sum_probs=128.2
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 040367 214 NVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILIN 293 (400)
Q Consensus 214 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 293 (400)
|... ..+-..+...|+-+....+....... .+.+.......+....+.|++..|...+++..... ++|...|+.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHH
Confidence 4444 66667777788888888887776543 23466667778888888999999999999988876 788889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHH
Q 040367 294 GYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVE 373 (400)
Q Consensus 294 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 373 (400)
+|.+.|+.+.|..-|.+..+... -++..++.+...+.-.|+++.|..++......+ .-|..+-..+.......|++++
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHH
Confidence 99999999999998888888632 256677888888888899999999998888763 2367777888888888999998
Q ss_pred HHHHHHHHH
Q 040367 374 AVELFRTLR 382 (400)
Q Consensus 374 a~~~~~~~~ 382 (400)
|..+...-+
T Consensus 221 A~~i~~~e~ 229 (257)
T COG5010 221 AEDIAVQEL 229 (257)
T ss_pred HHhhccccc
Confidence 888766554
No 107
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.97 E-value=2.4e-06 Score=75.12 Aligned_cols=235 Identities=12% Similarity=0.016 Sum_probs=184.0
Q ss_pred CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 040367 48 LFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNT 127 (400)
Q Consensus 48 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 127 (400)
++|--..-..+...+...|-...|..+++++. .|.-.+.+|...|+..+|..+..+..+. +||+..|..
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~ 462 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCL 462 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHH
Confidence 34444455667788888899999999998865 3556788899999999999999888874 899999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHcC-----CCCCCcccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHH
Q 040367 128 LINGLYRTGHTIVALNLFEEMASG-----NGEFGVEGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCL 202 (400)
Q Consensus 128 l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 202 (400)
+++......-+++|.++.+....+ +...-..++++++.+.|+.-...+ +....+|..+..+..+.++++.|.+.
T Consensus 463 LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHH
Confidence 999988888899999998877554 222334688999999998877664 55677888888889999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-
Q 040367 203 LIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGC- 281 (400)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~- 281 (400)
|....... +.+...|+++-.+|.+.++..+|...+.+..+.+ ..+...+...+....+.|.+++|++.+.++.....
T Consensus 542 F~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~ 619 (777)
T KOG1128|consen 542 FHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKK 619 (777)
T ss_pred HHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhh
Confidence 99988753 4456789999999999999999999999999886 44566677777778899999999999998865321
Q ss_pred CCChhhHHHHHHHHH
Q 040367 282 THTVFSYSILINGYC 296 (400)
Q Consensus 282 ~~~~~~~~~l~~~~~ 296 (400)
..|..+...++..-.
T Consensus 620 ~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 620 YKDDEVLLIIVRTVL 634 (777)
T ss_pred cccchhhHHHHHHHH
Confidence 224455555554443
No 108
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=1.3e-05 Score=68.22 Aligned_cols=331 Identities=14% Similarity=0.090 Sum_probs=198.5
Q ss_pred chhHHHHhcCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 040367 2 CIFDYMLNMRPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRS 81 (400)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 81 (400)
..|-+.+...|. |...|..=..++.+.|++++|++=-.+..+.. |.-...|.....++.-.|++++|+..|.+-++.
T Consensus 23 ~~~t~ai~l~p~--nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~ 99 (539)
T KOG0548|consen 23 RLFTEAIMLSPT--NHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGAALFGLGDYEEAILAYSEGLEK 99 (539)
T ss_pred HHHHHHHccCCC--ccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHhcccHHHHHHHHHHHhhc
Confidence 345555555554 88888888999999999999988777777653 223668999999999999999999999887766
Q ss_pred CCCCChhhHHHHHHHHHhc---------------------------------------------------CCHHHHHHHH
Q 040367 82 CFTPNAVTFTSLIKGLCAE---------------------------------------------------SRIMEAAALF 110 (400)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~---------------------------------------------------~~~~~a~~~~ 110 (400)
. +.+...++.+.+++... .++..+.-.+
T Consensus 100 d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l 178 (539)
T KOG0548|consen 100 D-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQL 178 (539)
T ss_pred C-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHH
Confidence 3 22333444444433111 0001111110
Q ss_pred HHH-----HHc-------CCCC----------------------CHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCC
Q 040367 111 TKL-----RVF-------GCEP----------------------NVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFG 156 (400)
Q Consensus 111 ~~~-----~~~-------~~~~----------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 156 (400)
... ... +..| -..-...+.++..+..+++.|++.+..........+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~~~it 258 (539)
T KOG0548|consen 179 KGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELATDIT 258 (539)
T ss_pred hcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhhhH
Confidence 000 000 0011 124566777788888888888888877766542111
Q ss_pred c----------ccchHHHHHHHHHHHhCCCCCChHhH-------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 040367 157 V----------EGFVDKAKELFLQMKDENINPDVVTY-------TSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFN 219 (400)
Q Consensus 157 ~----------~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 219 (400)
. .|.+.+....-....+.|- -....| ..+..++.+.++++.++..|.+.......|+.
T Consensus 259 ~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---- 333 (539)
T KOG0548|consen 259 YLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL---- 333 (539)
T ss_pred HHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH----
Confidence 1 2222222222222222220 011122 22344666678888999999887665433322
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 040367 220 VIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNK 299 (400)
Q Consensus 220 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 299 (400)
..+....+++....+...-.+... ..-...-...+.+.|++..|...|.+++..+ |.|...|....-+|.+.|
T Consensus 334 -----ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~ 406 (539)
T KOG0548|consen 334 -----LSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLG 406 (539)
T ss_pred -----HHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHh
Confidence 223334444444444433322221 1122223566778889999999998888876 668888888888888999
Q ss_pred CHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHc
Q 040367 300 EIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRD 349 (400)
Q Consensus 300 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 349 (400)
.+..|++--+..++.+ ++....|..-..++....+++.|.+.|.+.++.
T Consensus 407 ~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 407 EYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred hHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9888888877777763 223444555555666677888888888888876
No 109
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.94 E-value=6.7e-07 Score=71.93 Aligned_cols=188 Identities=10% Similarity=-0.039 Sum_probs=126.8
Q ss_pred CCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH--H
Q 040367 177 NPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNV---VTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNA--F 251 (400)
Q Consensus 177 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~ 251 (400)
+.....+..+...+...|+++.|...++++.... +.+. ..+..+..++...|++++|...++++.+....... .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 3456677778888889999999999999887753 2222 45677778888899999999999999876332111 1
Q ss_pred hHHHHHHHHHhc--------CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhH
Q 040367 252 VYNTLMDGFCLT--------GRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIY 323 (400)
Q Consensus 252 ~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 323 (400)
.+..+..++... |++++|...++.+.... +.+...+..+..... .... . ....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~~~~------~--------~~~~ 169 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----LRNR------L--------AGKE 169 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----HHHH------H--------HHHH
Confidence 344555556554 67888888888887763 222223322221111 0000 0 0011
Q ss_pred HHHHHHHHhhCcHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Q 040367 324 NTLFVVLFEIHQVERAFKLFDEMQRDGV--AADTWTYRTFIDGLCKNSYIVEAVELFRTLRIL 384 (400)
Q Consensus 324 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 384 (400)
..+...+.+.|++++|...++++.+... +.....+..+..++.+.|++++|..+++.+...
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2456678889999999999999987621 223578889999999999999999999888753
No 110
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.92 E-value=7e-07 Score=71.80 Aligned_cols=173 Identities=9% Similarity=0.009 Sum_probs=118.8
Q ss_pred cccchHHHHHHHHHHHhCCCCCCh---HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC-HHHHHHHHHHHHhC---
Q 040367 157 VEGFVDKAKELFLQMKDENINPDV---VTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQ-PN-VVTFNVIMDELCKN--- 228 (400)
Q Consensus 157 ~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~-~~~~~~l~~~~~~~--- 228 (400)
..|+++.|...++++.... +.+. ..+..+..++...|++++|+..++++.+.... +. ..++..+..++...
T Consensus 45 ~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~ 123 (235)
T TIGR03302 45 DSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDR 123 (235)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhccc
Confidence 3788999999999998764 2222 46677888999999999999999999876421 11 12455555566654
Q ss_pred -----CChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHH
Q 040367 229 -----GKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEG 303 (400)
Q Consensus 229 -----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 303 (400)
|++++|.+.++.+...... +......+..... ... ... .....+...+.+.|++++
T Consensus 124 ~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~------~~~--------~~~~~~a~~~~~~g~~~~ 184 (235)
T TIGR03302 124 VDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRN------RLA--------GKELYVARFYLKRGAYVA 184 (235)
T ss_pred ccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHH------HHH--------HHHHHHHHHHHHcCChHH
Confidence 7889999999999886322 2222222211110 000 000 112256677889999999
Q ss_pred HHHHHHHHHhCCC--CCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHc
Q 040367 304 ALSLYGEMLSKGI--KPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRD 349 (400)
Q Consensus 304 a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 349 (400)
|...++.+.+... +.....+..+..++...|++++|..+++.+...
T Consensus 185 A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 185 AINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999887632 123567888899999999999999998888764
No 111
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=2.6e-05 Score=71.47 Aligned_cols=325 Identities=14% Similarity=0.134 Sum_probs=182.1
Q ss_pred CChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcC--CCCChhhH
Q 040367 15 PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLF--PDLYTYNILINCFCKMGRVSHGFVVLGRILRSC--FTPNAVTF 90 (400)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~ 90 (400)
.|...|+.++.- . -.--.++++...+.+++ .|+.-....+.++...+-+.+-+++++++.-.+ +.-+...-
T Consensus 950 ~D~~LW~~VL~e---~--n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQ 1024 (1666)
T KOG0985|consen 950 SDPDLWAKVLNE---E--NPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQ 1024 (1666)
T ss_pred cChHHHHHHHhc---c--ChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhh
Confidence 355566666531 1 11112344444443332 345555666677777777777777777766432 11222333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCC----CcccchHHHHH
Q 040367 91 TSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEF----GVEGFVDKAKE 166 (400)
Q Consensus 91 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~a~~ 166 (400)
|.|+-...+. +..++.+..+++.... .|+ +...+...+-+++|+.+|++..-..... ..-+..++|.+
T Consensus 1025 nLLiLtAika-d~trVm~YI~rLdnyD-a~~------ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~e 1096 (1666)
T KOG0985|consen 1025 NLLILTAIKA-DRTRVMEYINRLDNYD-APD------IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYE 1096 (1666)
T ss_pred hhHHHHHhhc-ChHHHHHHHHHhccCC-chh------HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHH
Confidence 4444443333 3445555555555433 222 2233344445555555555432210000 00112344444
Q ss_pred HHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 040367 167 LFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGV 246 (400)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 246 (400)
.-++.. .+..|..+..+-.+.|...+|++-|-+. .|+..|..++....+.|.+++..+++....+..-
T Consensus 1097 fAe~~n------~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~ 1164 (1666)
T KOG0985|consen 1097 FAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR 1164 (1666)
T ss_pred HHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc
Confidence 333332 3457888888888888888888777442 3677888888999999999998888888777655
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHH
Q 040367 247 RPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTL 326 (400)
Q Consensus 247 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 326 (400)
.|.. -..|+-+|.+.++..+.+++.. .||......+.+-|...|.++.|.-+|.. ...|..|
T Consensus 1165 E~~i--d~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~L 1226 (1666)
T KOG0985|consen 1165 EPYI--DSELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKL 1226 (1666)
T ss_pred Cccc--hHHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHH
Confidence 5443 3467888888888777555431 35555556666666666666666554432 2234444
Q ss_pred HHHHHhhCcHHHHHHHHHH------------------------HHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 040367 327 FVVLFEIHQVERAFKLFDE------------------------MQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTLR 382 (400)
Q Consensus 327 ~~~~~~~~~~~~a~~~~~~------------------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 382 (400)
...+...|++..|.+.-++ |....+.....-...++.-|-..|.+++.+.+++.-+
T Consensus 1227 a~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1227 ASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred HHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 4444444554444433222 2222333455566778888888888888888777654
No 112
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.90 E-value=2e-06 Score=78.21 Aligned_cols=358 Identities=11% Similarity=-0.023 Sum_probs=200.6
Q ss_pred hhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC-CCChhhHHHHHH
Q 040367 17 VCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCF-TPNAVTFTSLIK 95 (400)
Q Consensus 17 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~ 95 (400)
...|..|...|+...+..+|...|+.+.+.. ..+..........|....+++.|..+.-..-+... ..-...|....-
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGP 570 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccc
Confidence 4578888888988889999999999998875 44677888889999999999999888444333211 011223334445
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCc-----------ccchHHH
Q 040367 96 GLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGV-----------EGFVDKA 164 (400)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----------~~~~~~a 164 (400)
.|.+.+++..|..-|+...+.. |.|...|..++.+|.+.|++..|+++|.++....+.... .|.+.++
T Consensus 571 yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkea 649 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEA 649 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHH
Confidence 6778888888888888887764 558888999999999999999999999887766544221 6667777
Q ss_pred HHHHHHHHhCC------CCCChHhHHHHHHHHHhcCCHHH-------HHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCh
Q 040367 165 KELFLQMKDEN------INPDVVTYTSVIRGFCYANDWNE-------AKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKM 231 (400)
Q Consensus 165 ~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~-------a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 231 (400)
+..+....... ...-..++..+...+...|=..+ +++.|.-...+....+...|..+-.+|.-.-..
T Consensus 650 ld~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~ 729 (1238)
T KOG1127|consen 650 LDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQE 729 (1238)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHh
Confidence 77776664421 00111222222222222232233 333332222222122333333222222110000
Q ss_pred H------HHHHHH-HHHHHcCCC--------------------CCHHhHHHHHHHHHh--------cCCHHHHHHHHHHH
Q 040367 232 D------EASRLL-DLMIQIGVR--------------------PNAFVYNTLMDGFCL--------TGRVNRAKELFVSM 276 (400)
Q Consensus 232 ~------~a~~~~-~~~~~~~~~--------------------~~~~~~~~l~~~~~~--------~~~~~~a~~~~~~~ 276 (400)
+ ....++ .+....+.- .+..+|..++..|.+ ..+...|...+.+.
T Consensus 730 e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~Kka 809 (1238)
T KOG1127|consen 730 EPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKA 809 (1238)
T ss_pred cccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHH
Confidence 0 000011 111111111 112223333333322 12234566667666
Q ss_pred HhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHH
Q 040367 277 ESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTW 356 (400)
Q Consensus 277 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 356 (400)
++.. ..+...|+.|.-. ...|++.-+...|-+.+... +.+..+|..+...+....+++-|...|...+... +.+..
T Consensus 810 V~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~ 885 (1238)
T KOG1127|consen 810 VSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLV 885 (1238)
T ss_pred HHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhcC-chhhH
Confidence 6654 3456666666654 55566777776666655543 2255667777777777777777777777766542 22444
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHH
Q 040367 357 TYRTFIDGLCKNSYIVEAVELFRT 380 (400)
Q Consensus 357 ~~~~l~~~~~~~g~~~~a~~~~~~ 380 (400)
.|-.....-...|+.-++..+|..
T Consensus 886 ~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 886 QWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHh
Confidence 444443344445555555555544
No 113
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.90 E-value=3.6e-06 Score=78.02 Aligned_cols=84 Identities=10% Similarity=0.132 Sum_probs=63.1
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 040367 179 DVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMD 258 (400)
Q Consensus 179 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 258 (400)
+...+..+..+|-+.|+.++|..+|+++++.+ +-++.+.|.+...|... ++++|.+++.++...
T Consensus 115 ~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~-------------- 178 (906)
T PRK14720 115 NKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR-------------- 178 (906)
T ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH--------------
Confidence 45577778888888888888888888888876 56778888888888888 888888888877654
Q ss_pred HHHhcCCHHHHHHHHHHHHhc
Q 040367 259 GFCLTGRVNRAKELFVSMESM 279 (400)
Q Consensus 259 ~~~~~~~~~~a~~~~~~~~~~ 279 (400)
+...+++..+.++|.++...
T Consensus 179 -~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 179 -FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred -HHhhhcchHHHHHHHHHHhc
Confidence 44455666666666666654
No 114
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.89 E-value=6.9e-06 Score=73.47 Aligned_cols=317 Identities=16% Similarity=0.132 Sum_probs=183.0
Q ss_pred ChhhHHHHHHHHhccCChhHHHHHHHHHHhC-C-------C-CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC
Q 040367 16 PVCSFNILFGCLAKNKHYDTVLSLFKRLNST-G-------L-FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPN 86 (400)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-------~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 86 (400)
+-..|..+...|.+..+.+-|.-.+-.|... | . .|+ ..=..........|..++|+.+|++..+.
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~----- 829 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRY----- 829 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH-----
Confidence 4456777777888777777776666655432 1 0 121 22223333445677888888888877653
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHH
Q 040367 87 AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKE 166 (400)
Q Consensus 87 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~ 166 (400)
..|=..|-..|.+++|.++-+.=.+.. =..||......+...++.+.|+++|++... .|.+
T Consensus 830 ----DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~------------hafe 890 (1416)
T KOG3617|consen 830 ----DLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEYYEKAGV------------HAFE 890 (1416)
T ss_pred ----HHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHHHHhcCC------------hHHH
Confidence 233455667788888887766433221 234566667777777888888888877522 2233
Q ss_pred HHHHHHhCC--------CCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHH
Q 040367 167 LFLQMKDEN--------INPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLL 238 (400)
Q Consensus 167 ~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 238 (400)
+++.+.+.- -..|...|.-.....-..|+.+.|+.+|....+ |-.+++..+-.|+.++|-++-
T Consensus 891 v~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA 961 (1416)
T KOG3617|consen 891 VFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIA 961 (1416)
T ss_pred HHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHH
Confidence 333222210 012445566666666778888888888877654 455666777788889888876
Q ss_pred HHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCCChhhHHHHHHHHHhcC--CHHHHHHHHHH
Q 040367 239 DLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMG------CTHTVFSYSILINGYCKNK--EIEGALSLYGE 310 (400)
Q Consensus 239 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~ 310 (400)
++- -|......+.+.|...|++.+|..+|.+..... .+.+. -..|...+...| +.-.|-++|++
T Consensus 962 ~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~--~d~L~nlal~s~~~d~v~aArYyEe 1033 (1416)
T KOG3617|consen 962 EES------GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDM--KDRLANLALMSGGSDLVSAARYYEE 1033 (1416)
T ss_pred Hhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCH--HHHHHHHHhhcCchhHHHHHHHHHH
Confidence 652 255666678889999999999998887765311 00000 011111111111 22233333332
Q ss_pred HHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHH--------HHH--cCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 040367 311 MLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDE--------MQR--DGVAADTWTYRTFIDGLCKNSYIVEAVELFRT 380 (400)
Q Consensus 311 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~--------~~~--~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 380 (400)
. |. .....+..|-+.|.+.+|+++-=+ ++. .....|+...+.-.+.++...++++|..++-.
T Consensus 1034 ~---g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ 1105 (1416)
T KOG3617|consen 1034 L---GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCL 1105 (1416)
T ss_pred c---ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 2 11 112234455566666666654321 111 12334666777777777777777777777655
Q ss_pred HH
Q 040367 381 LR 382 (400)
Q Consensus 381 ~~ 382 (400)
.+
T Consensus 1106 ar 1107 (1416)
T KOG3617|consen 1106 AR 1107 (1416)
T ss_pred HH
Confidence 54
No 115
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=1.1e-05 Score=62.34 Aligned_cols=156 Identities=19% Similarity=0.113 Sum_probs=98.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 040367 183 YTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCL 262 (400)
Q Consensus 183 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 262 (400)
...-...|+..|++++|++...... +......=+..+.+..+.+-|.+.+++|.+. .+..+.+.|..+|.+
T Consensus 111 ~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~ 181 (299)
T KOG3081|consen 111 LLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVK 181 (299)
T ss_pred HHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHH
Confidence 3334456777788888877776521 2223333344556677777888888887763 245566666666554
Q ss_pred ----cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcH-H
Q 040367 263 ----TGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQV-E 337 (400)
Q Consensus 263 ----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~ 337 (400)
.+...+|..+|+++.+.- +|++.+.+....++...|++++|..+++.+..+... ++.+...++.+-...|.. +
T Consensus 182 la~ggek~qdAfyifeE~s~k~-~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~ 259 (299)
T KOG3081|consen 182 LATGGEKIQDAFYIFEELSEKT-PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAE 259 (299)
T ss_pred HhccchhhhhHHHHHHHHhccc-CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChH
Confidence 345777888888887643 677777777777778888888888888887776443 555555555555555554 3
Q ss_pred HHHHHHHHHHHc
Q 040367 338 RAFKLFDEMQRD 349 (400)
Q Consensus 338 ~a~~~~~~~~~~ 349 (400)
...+.+.++...
T Consensus 260 ~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 260 VTERNLSQLKLS 271 (299)
T ss_pred HHHHHHHHHHhc
Confidence 344455555543
No 116
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=6.3e-06 Score=63.73 Aligned_cols=249 Identities=14% Similarity=0.115 Sum_probs=160.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhC
Q 040367 95 KGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDE 174 (400)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 174 (400)
+-+.-.|.+..++..-+..... +.+...-..+-++|...|++...+ .++...
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~--------------------------~eI~~~ 67 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVI--------------------------SEIKEG 67 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHcccccccc--------------------------cccccc
Confidence 3344567777776665554433 234444445566777766632111 111111
Q ss_pred CCCCChHhHHHHHHHHHhcCCHHHHHHH-HHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhH
Q 040367 175 NINPDVVTYTSVIRGFCYANDWNEAKCL-LIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVY 253 (400)
Q Consensus 175 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 253 (400)
. .|.......+......-++.+.-+.- .+.+.......+......-...|...|++++|++.+.... +....
T Consensus 68 ~-~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~ 140 (299)
T KOG3081|consen 68 K-ATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAA 140 (299)
T ss_pred c-CChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHH
Confidence 1 23333343344444444444444433 3444444333343444444567899999999999988722 33334
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCchhhHHHHHHH
Q 040367 254 NTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCK----NKEIEGALSLYGEMLSKGIKPDVVIYNTLFVV 329 (400)
Q Consensus 254 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 329 (400)
..=+..+.+..+++-|...+++|.+.+ +..+.+.|.+++.+ .+.+..|.-+|++|.++ .+|+..+.+....+
T Consensus 141 Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~ 216 (299)
T KOG3081|consen 141 ALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVC 216 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHH
Confidence 444556778889999999999999753 56677777777764 35689999999999875 67899999999999
Q ss_pred HHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHH-HHHHHHHHHH
Q 040367 330 LFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVE-AVELFRTLRI 383 (400)
Q Consensus 330 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~ 383 (400)
+...|++++|..+++.++.+. ..++.+...++-+-...|...+ ..+.+.++..
T Consensus 217 ~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 217 HLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 999999999999999999874 3467777777777777776644 4455666654
No 117
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.87 E-value=2e-07 Score=67.95 Aligned_cols=104 Identities=9% Similarity=-0.115 Sum_probs=70.8
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 040367 20 FNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCA 99 (400)
Q Consensus 20 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 99 (400)
+......+.+.|++++|...|+...... +.+...+..+..++...|++++|...|++....+ +.+...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 4455666777777777777777777664 4466677777777777777777777777777654 3466677777777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 040367 100 ESRIMEAAALFTKLRVFGCEPNVFTYN 126 (400)
Q Consensus 100 ~~~~~~a~~~~~~~~~~~~~~~~~~~~ 126 (400)
.|++++|...|+...+.. +.+...+.
T Consensus 105 ~g~~~eAi~~~~~Al~~~-p~~~~~~~ 130 (144)
T PRK15359 105 MGEPGLAREAFQTAIKMS-YADASWSE 130 (144)
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHH
Confidence 777777777777776653 22344443
No 118
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.86 E-value=2.4e-05 Score=65.94 Aligned_cols=211 Identities=16% Similarity=0.105 Sum_probs=134.1
Q ss_pred ccchHHHHHHHHHHHhCC--CCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHH
Q 040367 158 EGFVDKAKELFLQMKDEN--INPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEAS 235 (400)
Q Consensus 158 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 235 (400)
..++.++...-+++...+ -.|+...+...+.+......-..+...+.+..+. .-...-|.. ...+...|++++|+
T Consensus 250 ~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~-A~~~~~~~~~d~A~ 326 (484)
T COG4783 250 EERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGR-ALQTYLAGQYDEAL 326 (484)
T ss_pred hhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHH-HHHHHHhcccchHH
Confidence 445555555555554432 1334444444444333332222222222222221 112222333 33556788899999
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 040367 236 RLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKG 315 (400)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 315 (400)
..+..+... .+.|+.........+.+.++..+|.+.++.+.... +......-.+.+++.+.|++.+|+.+++......
T Consensus 327 ~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~ 404 (484)
T COG4783 327 KLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND 404 (484)
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Confidence 999988775 34466666677788889999999999999998874 3336667778888999999999999998888764
Q ss_pred CCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcccchhHHH
Q 040367 316 IKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTLRILKCELDIRAY 393 (400)
Q Consensus 316 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 393 (400)
+.|+..|..|.++|...|+..++.....+ .+...|+++.|...+....+. .+++..+|
T Consensus 405 -p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~~-~~~~~~~~ 462 (484)
T COG4783 405 -PEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRASQQ-VKLGFPDW 462 (484)
T ss_pred -CCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHHh-ccCCcHHH
Confidence 44788899999999988887776654433 355567777777777766654 24444444
No 119
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.85 E-value=2.6e-06 Score=65.75 Aligned_cols=129 Identities=15% Similarity=0.108 Sum_probs=80.6
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 040367 179 DVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMD 258 (400)
Q Consensus 179 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 258 (400)
|.......+....+.|++..|+..+++..... ++|...|+.+.-+|.+.|+.+.|..-|.+..+.. .-++...+.+..
T Consensus 99 d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgm 176 (257)
T COG5010 99 DRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGM 176 (257)
T ss_pred cHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHH
Confidence 44445556666666777777777776666543 5666667766666777777777776666666642 224455666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 040367 259 GFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGE 310 (400)
Q Consensus 259 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 310 (400)
.+.-.|+++.|..++......+ .-+..+-..+.......|++++|..+...
T Consensus 177 s~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 177 SLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 6666677777776666666553 33555556666666666666666665543
No 120
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.85 E-value=7.3e-07 Score=65.04 Aligned_cols=93 Identities=16% Similarity=0.009 Sum_probs=51.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhC
Q 040367 255 TLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIH 334 (400)
Q Consensus 255 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 334 (400)
.+..++...|++++|...|+.+.... +.+...|..+..++...|++++|...|+++...+. .+...+..+..++...|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHcC
Confidence 34455555566666666665555554 34555555555555556666666666665555432 24455555555555556
Q ss_pred cHHHHHHHHHHHHHc
Q 040367 335 QVERAFKLFDEMQRD 349 (400)
Q Consensus 335 ~~~~a~~~~~~~~~~ 349 (400)
++++|...|+..++.
T Consensus 107 ~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 107 EPGLAREAFQTAIKM 121 (144)
T ss_pred CHHHHHHHHHHHHHh
Confidence 666666666555553
No 121
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.83 E-value=5.7e-06 Score=76.77 Aligned_cols=131 Identities=8% Similarity=0.033 Sum_probs=76.0
Q ss_pred CCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC----
Q 040367 11 RPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPN---- 86 (400)
Q Consensus 11 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---- 86 (400)
...|.+...|..|+..+...+++++|.++.+...+.. +.....|-.+...+.+.++..++..+ .+...- ..+
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~-~~~~~~~ 100 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--NLIDSF-SQNLKWA 100 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--hhhhhc-ccccchh
Confidence 3345688899999999999999999999999877763 22334444455567777776665554 222221 111
Q ss_pred ---------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 040367 87 ---------------AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEE 147 (400)
Q Consensus 87 ---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 147 (400)
...+-.+..+|-+.|+.++|..+|+++.+.. +-|+.+.|.+...|... +.++|.+++.+
T Consensus 101 ~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~K 174 (906)
T PRK14720 101 IVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKK 174 (906)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence 1233344444555555555555555555544 33455555555555555 54444444433
No 122
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.82 E-value=5.9e-06 Score=75.75 Aligned_cols=148 Identities=9% Similarity=-0.032 Sum_probs=109.7
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHH
Q 040367 211 VQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSI 290 (400)
Q Consensus 211 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 290 (400)
.+.+...+..|.....+.|.+++|..+++.+.+.. +.+......++.++.+.+++++|....++..... +.+......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 45567778888888888888888888888888752 2245566677778888888888888888888775 556667777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 040367 291 LINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFI 362 (400)
Q Consensus 291 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 362 (400)
+..++.+.|++++|..+|+++...+ +.+..++..+..++...|+.++|...|++..+. ..|....|+.++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~ 229 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH
Confidence 7788888888888888888888743 234677777788888888888888888888776 344455555443
No 123
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.81 E-value=5.9e-05 Score=64.46 Aligned_cols=375 Identities=15% Similarity=0.183 Sum_probs=223.2
Q ss_pred hhHHHHhcCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCChhh----HHHHHHH
Q 040367 3 IFDYMLNMRPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCK-MGRVSH----GFVVLGR 77 (400)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~----a~~~~~~ 77 (400)
.++++...-|. ++..|..-+....+.++++....+|.+.... ..+...|...++.-.+ .|+... ..+.|+-
T Consensus 41 ~YEq~~~~FP~--s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f 116 (656)
T KOG1914|consen 41 TYEQLVNVFPS--SPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLYLSYVRETKGKLFGYREKMVQAYDF 116 (656)
T ss_pred HHHHHhccCCC--CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHHHHHHHHHccCcchHHHHHHHHHHH
Confidence 45566655555 7889999999999999999999999999876 3467777777765443 233333 2233333
Q ss_pred HHh-cCCCC-ChhhHHHHHHH---------HHhcCCHHHHHHHHHHHHHcCCCCCHHHH------HHHHHHH-------H
Q 040367 78 ILR-SCFTP-NAVTFTSLIKG---------LCAESRIMEAAALFTKLRVFGCEPNVFTY------NTLINGL-------Y 133 (400)
Q Consensus 78 ~~~-~~~~~-~~~~~~~l~~~---------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------~~l~~~~-------~ 133 (400)
... .|..+ +...|+..+.. +..+.+++...++|+++....+.-=...| ..=|+.. -
T Consensus 117 ~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e 196 (656)
T KOG1914|consen 117 ALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINIITARKFIGE 196 (656)
T ss_pred HHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 332 23322 33445555443 34455777788888888754211111122 1111111 1
Q ss_pred hcCChHHHHHHHHHHHcC-------CCCCCcccchHH--HHHHHHHHHh---CC-CC-CC--------hHhHHHHH----
Q 040367 134 RTGHTIVALNLFEEMASG-------NGEFGVEGFVDK--AKELFLQMKD---EN-IN-PD--------VVTYTSVI---- 187 (400)
Q Consensus 134 ~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~~--a~~~~~~~~~---~~-~~-~~--------~~~~~~l~---- 187 (400)
+...+-.|.++++++... .+.....|--++ ..+++...++ .+ +. .+ ..+|...+
T Consensus 197 ~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~ 276 (656)
T KOG1914|consen 197 RSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLG 276 (656)
T ss_pred hCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHh
Confidence 223455666666665432 122222222222 2233322222 11 11 00 00111111
Q ss_pred -----------------HHHHhcCC-------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC---CChHHHHHHHHH
Q 040367 188 -----------------RGFCYAND-------WNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKN---GKMDEASRLLDL 240 (400)
Q Consensus 188 -----------------~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~ 240 (400)
+.+...|+ .+++..+++..+..-...+..+|..+...--.. ...+....++++
T Consensus 277 ~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ 356 (656)
T KOG1914|consen 277 YHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNK 356 (656)
T ss_pred cCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHH
Confidence 11222232 345555555544332222333333333211111 135566667777
Q ss_pred HHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc
Q 040367 241 MIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTH-TVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPD 319 (400)
Q Consensus 241 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 319 (400)
.+......-..+|..+++.-.+....+.|..+|.++.+.+..+ ++.+.++++..|+ .++.+-|.++|+--.++ +..+
T Consensus 357 ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~ 434 (656)
T KOG1914|consen 357 LLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDS 434 (656)
T ss_pred HHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCC
Confidence 6665333334577788888889999999999999999877666 7778888888766 57889999999977665 2334
Q ss_pred hhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 040367 320 VVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAAD--TWTYRTFIDGLCKNSYIVEAVELFRTLRI 383 (400)
Q Consensus 320 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 383 (400)
+......+..+...++-..+..+|++....++.|+ ...|..++.--..-|+...++++-+++..
T Consensus 435 p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 435 PEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred hHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 55556778888899999999999999998866655 57899999988899999999998888763
No 124
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.81 E-value=7.5e-06 Score=74.67 Aligned_cols=370 Identities=13% Similarity=0.091 Sum_probs=219.0
Q ss_pred hhHHHHhcCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 040367 3 IFDYMLNMRPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGL-FPDLYTYNILINCFCKMGRVSHGFVVLGRILRS 81 (400)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 81 (400)
.|+...+-++. +..++....+.|++..+++.|..+.-...+... ..-..-|....-.|...++...|..-|+...+.
T Consensus 514 Cf~KAFeLDat--daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~ 591 (1238)
T KOG1127|consen 514 CFDKAFELDAT--DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRT 591 (1238)
T ss_pred HHHHHhcCCch--hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcC
Confidence 56667777766 888999999999999999999988443333210 001122333455667788899999999998887
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCc---
Q 040367 82 CFTPNAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPN-VFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGV--- 157 (400)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--- 157 (400)
. +.|...|..++.+|.+.|++..|.++|.+.... .|+ ...-.......+..|.+.+|+..+..+...-..+..
T Consensus 592 d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~ 668 (1238)
T KOG1127|consen 592 D-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQN 668 (1238)
T ss_pred C-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 6 347888999999999999999999999887765 343 333333344456678888888877776543211110
Q ss_pred ---------------cc-------chHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHH--H----HHHHH-HHHHh
Q 040367 158 ---------------EG-------FVDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWN--E----AKCLL-IEMMD 208 (400)
Q Consensus 158 ---------------~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~----a~~~~-~~~~~ 208 (400)
.| .++.+++.|.-........+...|-.+..+|.-.-..+ . ...++ .+...
T Consensus 669 gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~ 748 (1238)
T KOG1127|consen 669 GLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEK 748 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHh
Confidence 22 23333333333333322223333433333322111111 0 00011 11111
Q ss_pred CCC--------------------CCCHHHHHHHHHHHHh----CC----ChHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 040367 209 QGV--------------------QPNVVTFNVIMDELCK----NG----KMDEASRLLDLMIQIGVRPNAFVYNTLMDGF 260 (400)
Q Consensus 209 ~~~--------------------~~~~~~~~~l~~~~~~----~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 260 (400)
.+. ..+..+|..+...|.+ .+ +...|...+.+.++.. ..+..+++.|.-+
T Consensus 749 ~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl- 826 (1238)
T KOG1127|consen 749 TGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL- 826 (1238)
T ss_pred cccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-
Confidence 111 1123344444444433 11 2346777777776652 2245566655544
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHH
Q 040367 261 CLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAF 340 (400)
Q Consensus 261 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 340 (400)
...|++.-|.-.|-+-.... +....+|..+...+.+..+++-|...|.......+ .|...|-.........|+.-++.
T Consensus 827 sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP-~nl~~WlG~Ali~eavG~ii~~~ 904 (1238)
T KOG1127|consen 827 SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDP-LNLVQWLGEALIPEAVGRIIERL 904 (1238)
T ss_pred hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhcCc-hhhHHHHHHHHhHHHHHHHHHHH
Confidence 66688888888887776654 55677888888889999999999999998887643 35666665555556778888888
Q ss_pred HHHHHHH----HcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 040367 341 KLFDEMQ----RDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTL 381 (400)
Q Consensus 341 ~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 381 (400)
.+|..-. ..|-.|+..-|-....-...+|+.++-+...+.+
T Consensus 905 ~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki 949 (1238)
T KOG1127|consen 905 ILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKI 949 (1238)
T ss_pred HHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhh
Confidence 8886622 1233444444444444445566665555444443
No 125
>PF12854 PPR_1: PPR repeat
Probab=98.80 E-value=9.4e-09 Score=53.40 Aligned_cols=32 Identities=47% Similarity=0.788 Sum_probs=21.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 040367 350 GVAADTWTYRTFIDGLCKNSYIVEAVELFRTL 381 (400)
Q Consensus 350 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 381 (400)
|+.||..+|+.|+.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666665
No 126
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.78 E-value=4.4e-07 Score=65.93 Aligned_cols=110 Identities=13% Similarity=0.052 Sum_probs=77.0
Q ss_pred hhHHHHhcCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 040367 3 IFDYMLNMRPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSC 82 (400)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 82 (400)
.|+.++...|. +......+...+.+.|++++|...|+.+...+ +.+...+..+...+...|++++|...++...+.+
T Consensus 5 ~~~~~l~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLGLDSE--QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHcCChh--hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45566666555 55556666777777777888887777776654 4466777777777777777777777777776654
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 040367 83 FTPNAVTFTSLIKGLCAESRIMEAAALFTKLRVF 116 (400)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 116 (400)
+.+...+..+..++...|++++|...|+...+.
T Consensus 82 -p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 82 -PDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred -CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345666666777777777777777777777765
No 127
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.78 E-value=6.6e-05 Score=69.01 Aligned_cols=338 Identities=14% Similarity=0.116 Sum_probs=191.6
Q ss_pred hhHHHHhcCCC-CCChhhHHHHHHHHhccCChhHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 040367 3 IFDYMLNMRPS-PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSTG--LFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 79 (400)
Q Consensus 3 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 79 (400)
+.|.+++.... ..|+..-+..+.++...+-+.+-+++++++.-.+ +..+...-+.++-...+ -+..+..+..+++.
T Consensus 969 LiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLd 1047 (1666)
T KOG0985|consen 969 LIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLD 1047 (1666)
T ss_pred HHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhc
Confidence 34455544332 3466777888999999999999999999987542 12233334444444333 34556666666665
Q ss_pred hcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCC-----
Q 040367 80 RSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGE----- 154 (400)
Q Consensus 80 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----- 154 (400)
..+ .|+ +...+..++-+++|..+|++.. .+....+.|+. ..+..+.|.++-++..+....
T Consensus 1048 nyD-a~~------ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n~p~vWsqlak 1112 (1666)
T KOG0985|consen 1048 NYD-APD------IAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCNEPAVWSQLAK 1112 (1666)
T ss_pred cCC-chh------HHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhCChHHHHHHHH
Confidence 443 222 2333445556666666665532 23333333332 122223333222222110000
Q ss_pred -CCcccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHH
Q 040367 155 -FGVEGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDE 233 (400)
Q Consensus 155 -~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 233 (400)
.-..|...+|++.|-+ ..|+..|..++....+.|.|++-.+++....+....|.. =+.++-+|++.++..+
T Consensus 1113 AQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~e 1184 (1666)
T KOG0985|consen 1113 AQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTE 1184 (1666)
T ss_pred HHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHH
Confidence 0001223344433322 126678999999999999999999998888776544443 3567788999888887
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH--
Q 040367 234 ASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEM-- 311 (400)
Q Consensus 234 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-- 311 (400)
.++.+. -|+......+.+-|...+.++.|.-+|..+. .|..|...+...|+++.|...-+++
T Consensus 1185 lE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS---------N~a~La~TLV~LgeyQ~AVD~aRKAns 1248 (1666)
T KOG0985|consen 1185 LEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVS---------NFAKLASTLVYLGEYQGAVDAARKANS 1248 (1666)
T ss_pred HHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 666542 4566666667777777777777766665432 2455555555555555554433322
Q ss_pred ----------------------HhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 040367 312 ----------------------LSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNS 369 (400)
Q Consensus 312 ----------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 369 (400)
...++.....-..-++..|-..|-+++.+.+++..... -.-..-.|+.|.-.|.+-
T Consensus 1249 ~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGL-ERAHMgmfTELaiLYsky- 1326 (1666)
T KOG0985|consen 1249 TKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGL-ERAHMGMFTELAILYSKY- 1326 (1666)
T ss_pred hhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhch-hHHHHHHHHHHHHHHHhc-
Confidence 11122223344456677777778888888777776543 122455677777666554
Q ss_pred cHHHHHHHHHHHH
Q 040367 370 YIVEAVELFRTLR 382 (400)
Q Consensus 370 ~~~~a~~~~~~~~ 382 (400)
++++..+.++..-
T Consensus 1327 kp~km~EHl~LFw 1339 (1666)
T KOG0985|consen 1327 KPEKMMEHLKLFW 1339 (1666)
T ss_pred CHHHHHHHHHHHH
Confidence 4566666665554
No 128
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.78 E-value=3.7e-06 Score=77.01 Aligned_cols=182 Identities=8% Similarity=0.053 Sum_probs=139.2
Q ss_pred CCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHH
Q 040367 176 INPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNT 255 (400)
Q Consensus 176 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 255 (400)
++.+...+..|..+..+.|.+++|..+++...+.. +.+......+...+.+.+++++|+...++..... +.+......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 45678899999999999999999999999999863 4455677788889999999999999999999874 336777888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCc
Q 040367 256 LMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQ 335 (400)
Q Consensus 256 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 335 (400)
+..++.+.|++++|..+|+++...+ +.+...+..+..++...|+.++|...|++..+.. .+....|+.++ ++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~------~~ 231 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL------VD 231 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH------HH
Confidence 8889999999999999999999843 4568889999999999999999999999998862 33344444433 34
Q ss_pred HHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHh
Q 040367 336 VERAFKLFDEMQRD----GVAADTWTYRTFIDGLCK 367 (400)
Q Consensus 336 ~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~ 367 (400)
...-...++++.-. |...........+..|.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (694)
T PRK15179 232 LNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGR 267 (694)
T ss_pred HHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhh
Confidence 44445555555433 233334445555555543
No 129
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.75 E-value=1.7e-05 Score=70.30 Aligned_cols=54 Identities=15% Similarity=0.040 Sum_probs=32.0
Q ss_pred HHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 040367 327 FVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTLRI 383 (400)
Q Consensus 327 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 383 (400)
+..|-+.|..+..+++.++-... .-..|...+..-+...|+.+.|...|-+.-+
T Consensus 857 iqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d 910 (1636)
T KOG3616|consen 857 IQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD 910 (1636)
T ss_pred HHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh
Confidence 34444444444444444332211 1245566777888889999999888776654
No 130
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.75 E-value=6.4e-07 Score=65.05 Aligned_cols=94 Identities=20% Similarity=0.141 Sum_probs=44.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHh
Q 040367 253 YNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFE 332 (400)
Q Consensus 253 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 332 (400)
...+...+...|++++|...++.+...+ +.+...+..+...+...|++++|...++...+.+ +.+...+..+..++..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 3344444444555555555555544433 3344444444445555555555555555444432 2233344444444445
Q ss_pred hCcHHHHHHHHHHHHH
Q 040367 333 IHQVERAFKLFDEMQR 348 (400)
Q Consensus 333 ~~~~~~a~~~~~~~~~ 348 (400)
.|++++|...|+...+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 98 LGEPESALKALDLAIE 113 (135)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555544444
No 131
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.75 E-value=1.5e-05 Score=70.70 Aligned_cols=162 Identities=17% Similarity=0.165 Sum_probs=101.5
Q ss_pred chHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHH
Q 040367 160 FVDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLD 239 (400)
Q Consensus 160 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 239 (400)
.+.+|+.+++.+.+.+ .-..-|..+..-|+..|+++.|.++|-+.- .++..+.+|.+.|+++.|.++-.
T Consensus 747 ew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~ 815 (1636)
T KOG3616|consen 747 EWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAE 815 (1636)
T ss_pred hhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHH
Confidence 3667777777776653 223356667778888888888888875432 34556778888888888887766
Q ss_pred HHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc
Q 040367 240 LMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPD 319 (400)
Q Consensus 240 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 319 (400)
+.. |.......|-.-..-.-..|++.+|.++|-.+. .|+ ..|++|-+.|..+..+++..+-.-.. -
T Consensus 816 e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h~d~---l 881 (1636)
T KOG3616|consen 816 ECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHHGDH---L 881 (1636)
T ss_pred Hhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhChhh---h
Confidence 653 334445555555555667778888777765543 343 34667777777777776655432211 1
Q ss_pred hhhHHHHHHHHHhhCcHHHHHHHHHHH
Q 040367 320 VVIYNTLFVVLFEIHQVERAFKLFDEM 346 (400)
Q Consensus 320 ~~~~~~l~~~~~~~~~~~~a~~~~~~~ 346 (400)
..|...+..-+-..|+...|.+.|-++
T Consensus 882 ~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 882 HDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred hHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 234445555666667777776665443
No 132
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.72 E-value=4.9e-05 Score=58.53 Aligned_cols=188 Identities=13% Similarity=0.126 Sum_probs=126.3
Q ss_pred CCHHHHHHHHHHHHHc---C-CCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCC
Q 040367 101 SRIMEAAALFTKLRVF---G-CEPNVF-TYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDEN 175 (400)
Q Consensus 101 ~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 175 (400)
.+.++..+++.++... | ..++.. .|..++-+....|+.+.|..+++++. +.
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~-----------------------~~- 81 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLR-----------------------DR- 81 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHH-----------------------Hh-
Confidence 4566777777666543 2 344443 34556666667777555555554443 32
Q ss_pred CCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHH
Q 040367 176 INPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNT 255 (400)
Q Consensus 176 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 255 (400)
+|.+...-..-.-.+-..|++++|+++++.+++.+ +.|..++..-+...-..|+.-+|++-+....+. +..|...|.-
T Consensus 82 fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~e 159 (289)
T KOG3060|consen 82 FPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHE 159 (289)
T ss_pred CCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHH
Confidence 22233322222233556788999999999988875 556777776666666777777888888877776 5668889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHhCC
Q 040367 256 LMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNK---EIEGALSLYGEMLSKG 315 (400)
Q Consensus 256 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~ 315 (400)
+...|...|++++|.-.++++.-.. |.++..+..+...+.-.| +.+.+.++|.+.++..
T Consensus 160 LaeiY~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 160 LAEIYLSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHHHHHhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999888665 556666666666554443 5667888888888764
No 133
>PF12854 PPR_1: PPR repeat
Probab=98.69 E-value=3.1e-08 Score=51.44 Aligned_cols=32 Identities=47% Similarity=0.730 Sum_probs=17.7
Q ss_pred CCCCChHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 040367 175 NINPDVVTYTSVIRGFCYANDWNEAKCLLIEM 206 (400)
Q Consensus 175 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 206 (400)
|++||..+|+.++.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34555555555555555555555555555554
No 134
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.69 E-value=6.6e-05 Score=57.84 Aligned_cols=187 Identities=13% Similarity=0.078 Sum_probs=136.9
Q ss_pred cchHHHHHHHHHHHhC---C-CCCChHh-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHH
Q 040367 159 GFVDKAKELFLQMKDE---N-INPDVVT-YTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDE 233 (400)
Q Consensus 159 ~~~~~a~~~~~~~~~~---~-~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 233 (400)
.+.++.++++.++... | ..++..+ |..++-+....|+.+.|...++++.+. ++-+..+-..-.--+-..|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhh
Confidence 5578888888877543 3 4455443 455666777889999999999998876 34344443333334566899999
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040367 234 ASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLS 313 (400)
Q Consensus 234 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 313 (400)
|.++++.+++.+ +.|..++..=+...-..|+.-+|++-+....+.- ..|...|..+...|...|++++|.-.+++++-
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F-~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF-MNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 999999998875 4466667666666777888888888888887764 67899999999999999999999999999987
Q ss_pred CCCCCchhhHHHHHHHHHh---hCcHHHHHHHHHHHHHc
Q 040367 314 KGIKPDVVIYNTLFVVLFE---IHQVERAFKLFDEMQRD 349 (400)
Q Consensus 314 ~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~ 349 (400)
.. |.++..+..+...+.- ..+...+.+++.+..+.
T Consensus 183 ~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 183 IQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred cC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 64 2355555666655443 44567789999998875
No 135
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.65 E-value=1.3e-05 Score=71.75 Aligned_cols=84 Identities=18% Similarity=0.190 Sum_probs=53.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 040367 284 TVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFID 363 (400)
Q Consensus 284 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 363 (400)
+...|....+.....|+.+.|+.+|..+.+ |-.+++..+-.|+.++|.++-++- -|...-..|.+
T Consensus 911 d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR 975 (1416)
T KOG3617|consen 911 DESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLAR 975 (1416)
T ss_pred chHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHH
Confidence 445666667666777888888887776654 334555555667777777665442 14444455667
Q ss_pred HHHhcCcHHHHHHHHHHHH
Q 040367 364 GLCKNSYIVEAVELFRTLR 382 (400)
Q Consensus 364 ~~~~~g~~~~a~~~~~~~~ 382 (400)
.|...|++.+|+..|-+..
T Consensus 976 ~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 976 MYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HhhhhHHHHHHHHHHHHHH
Confidence 7777777777777766654
No 136
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=98.61 E-value=0.00023 Score=59.69 Aligned_cols=362 Identities=13% Similarity=0.114 Sum_probs=206.4
Q ss_pred hcCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChh
Q 040367 9 NMRPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAV 88 (400)
Q Consensus 9 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 88 (400)
+.+| .|..+|..|+..+..+|.+++..+++++|..- ++-=..+|...+.+-...+++.....+|.+.+.. ..+..
T Consensus 36 kdNP--tnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k--~l~ld 110 (660)
T COG5107 36 KDNP--TNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK--SLNLD 110 (660)
T ss_pred hcCc--hhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh--hccHh
Confidence 4444 49999999999999999999999999999864 2434667888888888888999999999988876 34566
Q ss_pred hHHHHHHHHHhcCCH------HHHHHHHHHHHH-cCCCC-CHHHHHHHHHHHH---------hcCChHHHHHHHHHHHcC
Q 040367 89 TFTSLIKGLCAESRI------MEAAALFTKLRV-FGCEP-NVFTYNTLINGLY---------RTGHTIVALNLFEEMASG 151 (400)
Q Consensus 89 ~~~~l~~~~~~~~~~------~~a~~~~~~~~~-~~~~~-~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~ 151 (400)
.|...+.--.+.+.. ....+.|+-... .++.| +...|+..+..+. .+.+.+.....+.+++..
T Consensus 111 LW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~t 190 (660)
T COG5107 111 LWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQT 190 (660)
T ss_pred HHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcC
Confidence 666655543332211 111222332222 23333 3334444333221 122334444455555433
Q ss_pred CCCCCc-------------------------ccchHHHHHHHHHHHh--CCC----------------------------
Q 040367 152 NGEFGV-------------------------EGFVDKAKELFLQMKD--ENI---------------------------- 176 (400)
Q Consensus 152 ~~~~~~-------------------------~~~~~~a~~~~~~~~~--~~~---------------------------- 176 (400)
....-. ..-+..|...++++.. .|+
T Consensus 191 P~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkw 270 (660)
T COG5107 191 PMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKW 270 (660)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhH
Confidence 211000 1112233333333221 111
Q ss_pred ----------------------------CCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHh
Q 040367 177 ----------------------------NPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIM-DELCK 227 (400)
Q Consensus 177 ----------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~ 227 (400)
+.....|--.-..+...++-+.|.......... .|+ ....+ ..|.-
T Consensus 271 E~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--sps---L~~~lse~yel 345 (660)
T COG5107 271 EMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPS---LTMFLSEYYEL 345 (660)
T ss_pred hhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCc---hheeHHHHHhh
Confidence 001111111111222334444444444433221 222 11111 22222
Q ss_pred CCChHHHHHHHHHHHHc--------------CC---------------CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040367 228 NGKMDEASRLLDLMIQI--------------GV---------------RPNAFVYNTLMDGFCLTGRVNRAKELFVSMES 278 (400)
Q Consensus 228 ~~~~~~a~~~~~~~~~~--------------~~---------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 278 (400)
.++-+.....|+...+. +. ..-..+|...+++-.+....+.|..+|.+..+
T Consensus 346 ~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk 425 (660)
T COG5107 346 VNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRK 425 (660)
T ss_pred cccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence 23333222222222110 11 01123566677777788889999999999988
Q ss_pred cC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCC--H
Q 040367 279 MG-CTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAAD--T 355 (400)
Q Consensus 279 ~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~ 355 (400)
.+ ..+++..+++++..++ .|++.-|..+|+--..+ ++.+....+..+..+...++-+.|..+|+..... +..+ .
T Consensus 426 ~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-f~d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k 502 (660)
T COG5107 426 EGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-FPDSTLYKEKYLLFLIRINDEENARALFETSVER-LEKTQLK 502 (660)
T ss_pred cCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhh
Confidence 87 5678888899888665 57888999999876665 2223333456677778899999999999976654 3323 5
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 040367 356 WTYRTFIDGLCKNSYIVEAVELFRTLRI 383 (400)
Q Consensus 356 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 383 (400)
..|..++.--..-|+...+..+=++|.+
T Consensus 503 ~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 503 RIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 6788888888888999888888888875
No 137
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.59 E-value=4.3e-06 Score=70.85 Aligned_cols=125 Identities=18% Similarity=0.157 Sum_probs=81.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHH
Q 040367 252 VYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLF 331 (400)
Q Consensus 252 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 331 (400)
....|+..+...++++.|..+++++.+.. |+ ....+++.+...++-.+|.+++.+.++.. +.+...+......+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34455566666677777777777777553 33 34456666666677777777777777543 224555555566677
Q ss_pred hhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 040367 332 EIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTLR 382 (400)
Q Consensus 332 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 382 (400)
+.++++.|+.+.+++.+. .+.+..+|..|..+|.+.|+++.|+-.++.+.
T Consensus 246 ~k~~~~lAL~iAk~av~l-sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVEL-SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHh-CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 777777777777777765 23345677777777777777777777777665
No 138
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.58 E-value=2.3e-05 Score=66.14 Aligned_cols=140 Identities=14% Similarity=0.124 Sum_probs=100.0
Q ss_pred HHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCh
Q 040367 60 NCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPN-VFTYNTLINGLYRTGHT 138 (400)
Q Consensus 60 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~ 138 (400)
-.+...|+++.|+..++.++..- +.|...+....+.+.+.++..+|.+.++++... .|+ ......+..++.+.|++
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCCh
Confidence 34456788888888888887763 345556666668888888888888888888876 444 66677788888888886
Q ss_pred HHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 040367 139 IVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTF 218 (400)
Q Consensus 139 ~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 218 (400)
.+|+.+++.... . .+.|+..|..|..+|...|+..++..-.-
T Consensus 391 ~eai~~L~~~~~-----------------------~-~p~dp~~w~~LAqay~~~g~~~~a~~A~A-------------- 432 (484)
T COG4783 391 QEAIRILNRYLF-----------------------N-DPEDPNGWDLLAQAYAELGNRAEALLARA-------------- 432 (484)
T ss_pred HHHHHHHHHHhh-----------------------c-CCCCchHHHHHHHHHHHhCchHHHHHHHH--------------
Confidence 666555555433 2 25577788888888888888777654433
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHc
Q 040367 219 NVIMDELCKNGKMDEASRLLDLMIQI 244 (400)
Q Consensus 219 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 244 (400)
..+...|++++|...+....+.
T Consensus 433 ----E~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 433 ----EGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred ----HHHHhCCCHHHHHHHHHHHHHh
Confidence 3455677788887777777665
No 139
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.55 E-value=1e-05 Score=59.31 Aligned_cols=126 Identities=12% Similarity=0.144 Sum_probs=78.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCch--hhHHHH
Q 040367 252 VYNTLMDGFCLTGRVNRAKELFVSMESMGCTHT---VFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDV--VIYNTL 326 (400)
Q Consensus 252 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l 326 (400)
.|..++..+ ..++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+........|+. .....+
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344444444 3677777777777777653 222 122333456667778888888888877776533322 233445
Q ss_pred HHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 040367 327 FVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTL 381 (400)
Q Consensus 327 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 381 (400)
...+...|++++|+..++..... ......+....+.+.+.|++++|...|+..
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 66777778888888877664332 223455666777788888888888877654
No 140
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.48 E-value=2.2e-05 Score=57.50 Aligned_cols=124 Identities=14% Similarity=0.181 Sum_probs=63.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC--HHhHHHHH
Q 040367 183 YTSVIRGFCYANDWNEAKCLLIEMMDQGVQPN---VVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPN--AFVYNTLM 257 (400)
Q Consensus 183 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~ 257 (400)
|..++..+ ..++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+.+......++ ......+.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 33344333 3566666666666665542 222 12222344455666666666666666666542221 12233345
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 040367 258 DGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGE 310 (400)
Q Consensus 258 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 310 (400)
..+...|++++|...++..... ......+......+...|++++|...|+.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5566666666666666553322 22334455555666666666666666654
No 141
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.45 E-value=1.5e-05 Score=67.70 Aligned_cols=125 Identities=14% Similarity=0.135 Sum_probs=80.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 040367 183 YTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCL 262 (400)
Q Consensus 183 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 262 (400)
...++..+...++++.|+.+++++.+.. |+ ....++..+...++..+|.+++++.++.. +.+......-...+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 3445556666677777777777777653 33 33345666666667777777777776542 3345555555666677
Q ss_pred cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040367 263 TGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLS 313 (400)
Q Consensus 263 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 313 (400)
.++++.|..+.+++.... |.+..+|..|..+|...|+++.|+..+..+..
T Consensus 247 k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred cCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 777777777777777664 44555777777777777777777776665554
No 142
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.41 E-value=1.3e-05 Score=65.98 Aligned_cols=283 Identities=15% Similarity=0.071 Sum_probs=176.1
Q ss_pred HHHHhccCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhhHHHHHHHHHh----cCCC-CChhhHHHHH
Q 040367 24 FGCLAKNKHYDTVLSLFKRLNSTGLFPDL----YTYNILINCFCKMGRVSHGFVVLGRILR----SCFT-PNAVTFTSLI 94 (400)
Q Consensus 24 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~ 94 (400)
..-+++.|+....+.+|+...+.|-. |. .+|..|.++|.-.+++++|++....=+- .|-+ -...+...|.
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG 102 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG 102 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence 34689999999999999999998833 43 4577888889999999999887643211 1111 1122333455
Q ss_pred HHHHhcCCHHHHHHHHHHH----HHcCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCC-CCCcccchHHHHHHH
Q 040367 95 KGLCAESRIMEAAALFTKL----RVFGC-EPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNG-EFGVEGFVDKAKELF 168 (400)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~~----~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~a~~~~ 168 (400)
..+--.|.+++|...-.+- .+.|- ......+..+...|...|..-....- ...+. .-.....++.|.+.|
T Consensus 103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~p----ee~g~f~~ev~~al~~Av~fy 178 (639)
T KOG1130|consen 103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAP----EEKGAFNAEVTSALENAVKFY 178 (639)
T ss_pred chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCCh----hhcccccHHHHHHHHHHHHHH
Confidence 5566677888877654332 22221 12445667777777776642100000 00000 000011234444444
Q ss_pred HH-------HHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHH----hCCC-CCCHHHHHHHHHHHHhCCChHHHHH
Q 040367 169 LQ-------MKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMM----DQGV-QPNVVTFNVIMDELCKNGKMDEASR 236 (400)
Q Consensus 169 ~~-------~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~ 236 (400)
.. +.+.. .-..+|..|...|.-.|+++.|+...+.-+ +-|- ......+..+.+++.-.|+++.|.+
T Consensus 179 ~eNL~l~~~lgDr~--aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~e 256 (639)
T KOG1130|consen 179 MENLELSEKLGDRL--AQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIE 256 (639)
T ss_pred HHHHHHHHHhhhHH--hhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHH
Confidence 33 22221 224567778888888899999988776533 2231 2234578888999999999999999
Q ss_pred HHHHHHHc----CC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCChhhHHHHHHHHHhcCCHHHHHH
Q 040367 237 LLDLMIQI----GV-RPNAFVYNTLMDGFCLTGRVNRAKELFVSMESM-----GCTHTVFSYSILINGYCKNKEIEGALS 306 (400)
Q Consensus 237 ~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~ 306 (400)
.|+..... |- ........+|.++|.-..++++|+..+.+-... +.--....+-+|..+|...|..++|+.
T Consensus 257 hYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~ 336 (639)
T KOG1130|consen 257 HYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALY 336 (639)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHH
Confidence 88765432 21 223456678889998888999999888764321 112245667789999999999999988
Q ss_pred HHHHHHh
Q 040367 307 LYGEMLS 313 (400)
Q Consensus 307 ~~~~~~~ 313 (400)
+...-++
T Consensus 337 fae~hl~ 343 (639)
T KOG1130|consen 337 FAELHLR 343 (639)
T ss_pred HHHHHHH
Confidence 8776554
No 143
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.36 E-value=2.2e-05 Score=64.36 Aligned_cols=129 Identities=12% Similarity=0.080 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 040367 217 TFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCL-TGRVNRAKELFVSMESMGCTHTVFSYSILINGY 295 (400)
Q Consensus 217 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 295 (400)
+|..++...-+.+..+.|..+|.++.+.+ ..+..+|......-.. .++.+.|..+|+...+.- +.+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f-~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF-PSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 44455555555555555555555555321 1223333333333222 344444555555555432 33444555555555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCch---hhHHHHHHHHHhhCcHHHHHHHHHHHHH
Q 040367 296 CKNKEIEGALSLYGEMLSKGIKPDV---VIYNTLFVVLFEIHQVERAFKLFDEMQR 348 (400)
Q Consensus 296 ~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 348 (400)
...++.+.|..+|++.+.. +.++. ..|...+..-.+.|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555543 22221 2455555555555555555555555544
No 144
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.33 E-value=9.4e-07 Score=46.72 Aligned_cols=33 Identities=48% Similarity=0.738 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhcccch
Q 040367 357 TYRTFIDGLCKNSYIVEAVELFRTLRILKCELD 389 (400)
Q Consensus 357 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 389 (400)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666665
No 145
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.32 E-value=1.2e-06 Score=46.28 Aligned_cols=33 Identities=33% Similarity=0.584 Sum_probs=27.2
Q ss_pred hHHHHHHHHhccCChhHHHHHHHHHHhCCCCCC
Q 040367 19 SFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPD 51 (400)
Q Consensus 19 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 51 (400)
+||.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888888776
No 146
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.32 E-value=1.2e-06 Score=45.96 Aligned_cols=33 Identities=30% Similarity=0.524 Sum_probs=26.5
Q ss_pred hhHHHHHHHHhccCChhHHHHHHHHHHhCCCCC
Q 040367 18 CSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFP 50 (400)
Q Consensus 18 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 50 (400)
.+|+.++.++.+.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888877766
No 147
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.31 E-value=1.5e-06 Score=45.53 Aligned_cols=33 Identities=18% Similarity=0.253 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHhcccc
Q 040367 356 WTYRTFIDGLCKNSYIVEAVELFRTLRILKCEL 388 (400)
Q Consensus 356 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 388 (400)
.+|+.++.+|.+.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356777777777777777777777777766665
No 148
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.28 E-value=1.8e-05 Score=67.54 Aligned_cols=124 Identities=13% Similarity=0.082 Sum_probs=99.0
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhh
Q 040367 245 GVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESM--GCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVI 322 (400)
Q Consensus 245 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 322 (400)
+.+.+......+++.+....+.+.+..++.+.... ....-..+..++++.|...|..+.++++++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44557777788888888888888898888888764 2223345567899999999999999999998888899999999
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 040367 323 YNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKN 368 (400)
Q Consensus 323 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 368 (400)
++.|+..+.+.|++..|.++...|...+...+..++..-+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999998888776666667766666666655
No 149
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.27 E-value=3.1e-05 Score=66.08 Aligned_cols=125 Identities=12% Similarity=0.133 Sum_probs=106.4
Q ss_pred CCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc--CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChh
Q 040367 209 QGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQI--GVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVF 286 (400)
Q Consensus 209 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 286 (400)
.+.+.+......+++.+....+.+.+..++.+.... ....-+.+..++++.|...|..+.+..+++.=...|+-||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 345677888888999998889999999999998876 222334566799999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhh
Q 040367 287 SYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEI 333 (400)
Q Consensus 287 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 333 (400)
+++.|+..+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999999998877777777777766666655
No 150
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=0.00079 Score=55.93 Aligned_cols=262 Identities=15% Similarity=0.068 Sum_probs=136.8
Q ss_pred HHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 040367 22 ILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAES 101 (400)
Q Consensus 22 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (400)
.....+.+..++..|+..+....+.. +.+...|..-...+...|++++|.--.+.-.+.... ......-.-+++...+
T Consensus 54 ~~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~ 131 (486)
T KOG0550|consen 54 EEGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALS 131 (486)
T ss_pred hhcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhH
Confidence 33445566677777888887777765 335556666666777777777776666555443211 1112222333333444
Q ss_pred CHHHHHHHHHHHH---------------HcCC-CCCHHHHHHHH-HHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHH
Q 040367 102 RIMEAAALFTKLR---------------VFGC-EPNVFTYNTLI-NGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKA 164 (400)
Q Consensus 102 ~~~~a~~~~~~~~---------------~~~~-~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a 164 (400)
+..+|.+.++.-. .... +|.-..+..+- .++...|+ .++|
T Consensus 132 ~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~-----------------------~~~a 188 (486)
T KOG0550|consen 132 DLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGD-----------------------YDEA 188 (486)
T ss_pred HHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhccc-----------------------chhH
Confidence 4444443333111 0000 11112222211 12333344 4444
Q ss_pred HHHHHHHHhCCCCCChHhHHHHHH--HHHhcCCHHHHHHHHHHHHhCCCCCCHHH-------------HHHHHHHHHhCC
Q 040367 165 KELFLQMKDENINPDVVTYTSVIR--GFCYANDWNEAKCLLIEMMDQGVQPNVVT-------------FNVIMDELCKNG 229 (400)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------------~~~l~~~~~~~~ 229 (400)
.+.--.+.+.. +.+ .+..+++ ++.-.++.+.|+..|++.+..+ |+-.. +..=.+-..+.|
T Consensus 189 ~~ea~~ilkld-~~n--~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G 263 (486)
T KOG0550|consen 189 QSEAIDILKLD-ATN--AEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNG 263 (486)
T ss_pred HHHHHHHHhcc-cch--hHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhcc
Confidence 44433333332 112 2222222 3445566777777777776543 33211 111122345677
Q ss_pred ChHHHHHHHHHHHHc---CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 040367 230 KMDEASRLLDLMIQI---GVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALS 306 (400)
Q Consensus 230 ~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 306 (400)
.+..|.+.+.+.+.. +..++...|.....+..+.|+.++|+.--+...+.+ +.-...+..-..++...++|++|.+
T Consensus 264 ~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~e~AV~ 342 (486)
T KOG0550|consen 264 NYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKWEEAVE 342 (486)
T ss_pred chhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888887764 334555666666677777888888887777777543 1112223333445666777888888
Q ss_pred HHHHHHhC
Q 040367 307 LYGEMLSK 314 (400)
Q Consensus 307 ~~~~~~~~ 314 (400)
-+++..+.
T Consensus 343 d~~~a~q~ 350 (486)
T KOG0550|consen 343 DYEKAMQL 350 (486)
T ss_pred HHHHHHhh
Confidence 87777664
No 151
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.24 E-value=4.6e-05 Score=54.86 Aligned_cols=95 Identities=14% Similarity=0.001 Sum_probs=61.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHh
Q 040367 253 YNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFE 332 (400)
Q Consensus 253 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 332 (400)
...+...+...|++++|..+|+.+...+ +.+..-|-.|..++...|++++|+..|..+...++ .|+..+-.+..++..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHH
Confidence 3344555556677777777777766655 44556666666666777777777777777666653 356666666677777
Q ss_pred hCcHHHHHHHHHHHHHc
Q 040367 333 IHQVERAFKLFDEMQRD 349 (400)
Q Consensus 333 ~~~~~~a~~~~~~~~~~ 349 (400)
.|+.+.|.+.|+..+..
T Consensus 116 lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 116 CDNVCYAIKALKAVVRI 132 (157)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 77777777777666553
No 152
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.24 E-value=6.9e-05 Score=52.89 Aligned_cols=100 Identities=9% Similarity=-0.041 Sum_probs=72.9
Q ss_pred hhHHHHHHHHhccCChhHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCC--CChhhHHHH
Q 040367 18 CSFNILFGCLAKNKHYDTVLSLFKRLNSTGLF--PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFT--PNAVTFTSL 93 (400)
Q Consensus 18 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l 93 (400)
.++..+...+.+.|++++|.+.|+.+.+.... .....+..+..++.+.|+++.|...++.+...... .....+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 35666777788888888888888888765311 11346667788888888888888888888765322 124556777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcC
Q 040367 94 IKGLCAESRIMEAAALFTKLRVFG 117 (400)
Q Consensus 94 ~~~~~~~~~~~~a~~~~~~~~~~~ 117 (400)
..++.+.|++++|...++++.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 778888888888888888888764
No 153
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.23 E-value=0.004 Score=57.04 Aligned_cols=180 Identities=14% Similarity=0.198 Sum_probs=108.8
Q ss_pred HhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHH
Q 040367 27 LAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEA 106 (400)
Q Consensus 27 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 106 (400)
+.+.|..++|..+++.....+.. |..+...+-.+|...++.++|..+|++..+. .|+......+..+|.+.+.+.+-
T Consensus 53 l~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~q 129 (932)
T KOG2053|consen 53 LFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQ 129 (932)
T ss_pred HHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888887777666533 7777888888888888888888888888776 45666666777777777766543
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-C---------hHHHHHHHHHHHcCCCCCCc-------------ccchHH
Q 040367 107 AALFTKLRVFGCEPNVFTYNTLINGLYRTG-H---------TIVALNLFEEMASGNGEFGV-------------EGFVDK 163 (400)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~---------~~~a~~~~~~~~~~~~~~~~-------------~~~~~~ 163 (400)
.+.--++-+ ..+-+...+=++++.....- . ..-|.+.++.+...++.... .+.+++
T Consensus 130 Qkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~e 208 (932)
T KOG2053|consen 130 QKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQE 208 (932)
T ss_pred HHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHH
Confidence 322222222 12334444444444443321 1 12344455555555422111 667788
Q ss_pred HHHHHHH-HHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 040367 164 AKELFLQ-MKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQG 210 (400)
Q Consensus 164 a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 210 (400)
|..++.. ..+.-.+.+...-+.-+..+...++|.+..++-.++...|
T Consensus 209 al~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 209 ALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 8887743 3333223344444556667777788888888877777765
No 154
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.23 E-value=0.0011 Score=53.16 Aligned_cols=183 Identities=10% Similarity=0.012 Sum_probs=111.3
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHH
Q 040367 180 VVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTF---NVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTL 256 (400)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 256 (400)
...+-.....+...|++++|++.|+++.... +-+.... -.+..++.+.+++++|...+++..+........-+...
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 3334345556677899999999999988753 2223222 45567888899999999999998886433222233223
Q ss_pred HHHHHh--cC---------------C---HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 040367 257 MDGFCL--TG---------------R---VNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGI 316 (400)
Q Consensus 257 ~~~~~~--~~---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 316 (400)
+.+.+. .+ | ..+|...|+++++. -|+ ..-..+|...+..+...
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~-------------S~ya~~A~~rl~~l~~~-- 173 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPN-------------SQYTTDATKRLVFLKDR-- 173 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcC-------------ChhHHHHHHHHHHHHHH--
Confidence 333221 11 1 12344444444443 232 23344444444433322
Q ss_pred CCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 040367 317 KPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRD--GVAADTWTYRTFIDGLCKNSYIVEAVELFRTLR 382 (400)
Q Consensus 317 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 382 (400)
-...--.+.+.|.+.|.+..|..-++.+++. +.+........++.+|.+.|..++|.++...+.
T Consensus 174 --la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 --LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred --HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 0111124567788899999999999999876 233345667788899999999999988877664
No 155
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.22 E-value=4.5e-05 Score=64.96 Aligned_cols=102 Identities=8% Similarity=0.005 Sum_probs=83.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCc
Q 040367 256 LMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQ 335 (400)
Q Consensus 256 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 335 (400)
....+...|++++|+..|+++.+.. +.+...|..+..+|...|++++|+..++++++... .+...|..+..++...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCC
Confidence 4556678899999999999999876 56778888899999999999999999999998753 367778888899999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHH
Q 040367 336 VERAFKLFDEMQRDGVAADTWTYRTF 361 (400)
Q Consensus 336 ~~~a~~~~~~~~~~~~~~~~~~~~~l 361 (400)
+++|...|+++++. .|+......+
T Consensus 86 ~~eA~~~~~~al~l--~P~~~~~~~~ 109 (356)
T PLN03088 86 YQTAKAALEKGASL--APGDSRFTKL 109 (356)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 99999999999885 4444333333
No 156
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.22 E-value=8.4e-05 Score=56.34 Aligned_cols=86 Identities=7% Similarity=0.006 Sum_probs=54.0
Q ss_pred ChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHH
Q 040367 16 PVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPD--LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSL 93 (400)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 93 (400)
+...+..+...+...|++++|...|++..+.+..+. ...+..+..++...|++++|...+++..+.. +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 444566666677777777777777777765432221 3466677777777777777777777777653 2244455555
Q ss_pred HHHHHhcCC
Q 040367 94 IKGLCAESR 102 (400)
Q Consensus 94 ~~~~~~~~~ 102 (400)
..++...|+
T Consensus 113 g~~~~~~g~ 121 (172)
T PRK02603 113 AVIYHKRGE 121 (172)
T ss_pred HHHHHHcCC
Confidence 566666555
No 157
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.20 E-value=0.00014 Score=51.27 Aligned_cols=26 Identities=8% Similarity=-0.156 Sum_probs=10.8
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHH
Q 040367 358 YRTFIDGLCKNSYIVEAVELFRTLRI 383 (400)
Q Consensus 358 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 383 (400)
+..+..++.+.|++++|.+.++++.+
T Consensus 79 ~~~~~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 79 LLKLGMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 33333344444444444444444443
No 158
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.19 E-value=0.0002 Score=59.04 Aligned_cols=204 Identities=13% Similarity=0.077 Sum_probs=97.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhcCCC---C--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC--H
Q 040367 54 TYNILINCFCKMGRVSHGFVVLGRILRSCFT---P--NAVTFTSLIKGLCAESRIMEAAALFTKLRVF----GCEPN--V 122 (400)
Q Consensus 54 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~ 122 (400)
.|......|-..|++++|.+.|.+....... + -...|.....+|.+. ++++|.+.+++..+. | .++ .
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~aA 114 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG-RFSQAA 114 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-cHHHHH
Confidence 3445555566667777776666665432110 0 111233333333332 566666555554321 1 111 1
Q ss_pred HHHHHHHHHHHhc-CChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHH
Q 040367 123 FTYNTLINGLYRT-GHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKC 201 (400)
Q Consensus 123 ~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 201 (400)
..+..+...|... |+++.|++.|++ |.++|+.-... ..-..++..+...+.+.|++++|++
T Consensus 115 ~~~~~lA~~ye~~~~d~e~Ai~~Y~~----------------A~~~y~~e~~~--~~a~~~~~~~A~l~~~l~~y~~A~~ 176 (282)
T PF14938_consen 115 KCLKELAEIYEEQLGDYEKAIEYYQK----------------AAELYEQEGSP--HSAAECLLKAADLYARLGRYEEAIE 176 (282)
T ss_dssp HHHHHHHHHHCCTT--HHHHHHHHHH----------------HHHHHHHTT-H--HHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH----------------HHHHHHHCCCh--hhHHHHHHHHHHHHHHhCCHHHHHH
Confidence 2333344444444 455555444322 23333222110 1123456677778888889999999
Q ss_pred HHHHHHhCCCC-----CCHH-HHHHHHHHHHhCCChHHHHHHHHHHHHcC--CCCC--HHhHHHHHHHHHhc--CCHHHH
Q 040367 202 LLIEMMDQGVQ-----PNVV-TFNVIMDELCKNGKMDEASRLLDLMIQIG--VRPN--AFVYNTLMDGFCLT--GRVNRA 269 (400)
Q Consensus 202 ~~~~~~~~~~~-----~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~--~~~~~~l~~~~~~~--~~~~~a 269 (400)
+|++....... .+.. .+...+-++...|++..|.+.+++..... +..+ ......|+.++-.. ..+..+
T Consensus 177 ~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~a 256 (282)
T PF14938_consen 177 IYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEA 256 (282)
T ss_dssp HHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHH
T ss_pred HHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 88887754221 1121 22333446667788888888888876542 2222 34455566666332 234455
Q ss_pred HHHHHHHH
Q 040367 270 KELFVSME 277 (400)
Q Consensus 270 ~~~~~~~~ 277 (400)
..-|+.+.
T Consensus 257 v~~~d~~~ 264 (282)
T PF14938_consen 257 VAEYDSIS 264 (282)
T ss_dssp CHHHTTSS
T ss_pred HHHHcccC
Confidence 55554444
No 159
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.19 E-value=5.3e-05 Score=50.89 Aligned_cols=93 Identities=17% Similarity=0.152 Sum_probs=45.8
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 040367 20 FNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCA 99 (400)
Q Consensus 20 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 99 (400)
+..+...+...|++++|...++...+.. +.+...+..+...+...++++.|.+.++...... +.+...+..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 3344445555555555555555555442 2233444445555555555555555555554442 2223344444455555
Q ss_pred cCCHHHHHHHHHHHH
Q 040367 100 ESRIMEAAALFTKLR 114 (400)
Q Consensus 100 ~~~~~~a~~~~~~~~ 114 (400)
.|+++.|...+....
T Consensus 81 ~~~~~~a~~~~~~~~ 95 (100)
T cd00189 81 LGKYEEALEAYEKAL 95 (100)
T ss_pred HHhHHHHHHHHHHHH
Confidence 555555555554444
No 160
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.18 E-value=6.3e-05 Score=50.49 Aligned_cols=90 Identities=19% Similarity=0.204 Sum_probs=41.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCc
Q 040367 291 LINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSY 370 (400)
Q Consensus 291 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 370 (400)
+...+...|++++|...++++.+... .+...+..+...+...|++++|.+.++...+.. +.+...+..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHh
Confidence 34444444555555555554444321 122334444444444555555555555544432 1223344444455555555
Q ss_pred HHHHHHHHHHHH
Q 040367 371 IVEAVELFRTLR 382 (400)
Q Consensus 371 ~~~a~~~~~~~~ 382 (400)
+++|...+....
T Consensus 84 ~~~a~~~~~~~~ 95 (100)
T cd00189 84 YEEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHHH
Confidence 555555555444
No 161
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.18 E-value=6.9e-06 Score=53.72 Aligned_cols=81 Identities=17% Similarity=0.193 Sum_probs=42.6
Q ss_pred cCCHHHHHHHHHHHHhCCCC-CchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHH
Q 040367 298 NKEIEGALSLYGEMLSKGIK-PDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVE 376 (400)
Q Consensus 298 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 376 (400)
.|+++.|+.+++++.+.... ++...+..+..++.+.|++++|..+++. .+.+. .+......+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 35666666666666654321 1333444456666666666666666665 22111 122333444566666666666666
Q ss_pred HHHH
Q 040367 377 LFRT 380 (400)
Q Consensus 377 ~~~~ 380 (400)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6654
No 162
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.17 E-value=0.00017 Score=54.45 Aligned_cols=111 Identities=11% Similarity=0.002 Sum_probs=77.6
Q ss_pred hhHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC--ChhhHHHHHHHHHhcCCHHHHHHH
Q 040367 33 YDTVLSLFKRLN-STGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTP--NAVTFTSLIKGLCAESRIMEAAAL 109 (400)
Q Consensus 33 ~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~ 109 (400)
+..+...+..+. ..+..-....+..+...+...|++++|...+++.......+ ...++..+..++...|++++|...
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 455555555553 32222235567778888888999999999999997663222 235788888999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHH-------hcCChHHHHHH
Q 040367 110 FTKLRVFGCEPNVFTYNTLINGLY-------RTGHTIVALNL 144 (400)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~a~~~ 144 (400)
+++..... +....++..+...+. ..|+++.|...
T Consensus 95 ~~~Al~~~-~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~ 135 (168)
T CHL00033 95 YFQALERN-PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAW 135 (168)
T ss_pred HHHHHHhC-cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHH
Confidence 99988763 344566667777776 66666666555
No 163
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.17 E-value=0.00013 Score=52.65 Aligned_cols=98 Identities=8% Similarity=-0.032 Sum_probs=83.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 040367 285 VFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDG 364 (400)
Q Consensus 285 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 364 (400)
....-.+...+...|++++|.++|+-+....+. +..-|-.|..++-..|++++|++.+..+.... +.++..+..+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 344456666778899999999999999887543 67778889999999999999999999999875 3578889999999
Q ss_pred HHhcCcHHHHHHHHHHHHHh
Q 040367 365 LCKNSYIVEAVELFRTLRIL 384 (400)
Q Consensus 365 ~~~~g~~~~a~~~~~~~~~~ 384 (400)
+...|+.+.|.+.|+..+..
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999998754
No 164
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.16 E-value=6.6e-05 Score=62.04 Aligned_cols=132 Identities=14% Similarity=0.021 Sum_probs=77.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh----cCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh----CCC-CCchh
Q 040367 252 VYNTLMDGFCLTGRVNRAKELFVSMES----MGC-THTVFSYSILINGYCKNKEIEGALSLYGEMLS----KGI-KPDVV 321 (400)
Q Consensus 252 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~ 321 (400)
.|..|.+.|.-.|+++.|+...+.-.. .|- ......+..|..++.-.|+++.|.+.|+.... .|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 455566666667777777765543221 111 11233466677777777788887777765443 221 11233
Q ss_pred hHHHHHHHHHhhCcHHHHHHHHHHHHH----c-CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 040367 322 IYNTLFVVLFEIHQVERAFKLFDEMQR----D-GVAADTWTYRTFIDGLCKNSYIVEAVELFRTLRI 383 (400)
Q Consensus 322 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 383 (400)
+..+|...|.-..+++.|+.++.+=+. . ...-....+.+|..+|...|..++|+.+.+..++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 445566677677777777777755221 1 1122455667777788888888887777666553
No 165
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.14 E-value=4.3e-05 Score=60.45 Aligned_cols=98 Identities=15% Similarity=0.183 Sum_probs=70.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHH
Q 040367 259 GFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVER 338 (400)
Q Consensus 259 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 338 (400)
-..+.+++.+|+..|.+.++.. +.|..-|..-..+|.+.|.++.|++--+..+..+.. ...+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHH
Confidence 3556778888888888888775 556777777777888888888888777777765322 34577778888888888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHH
Q 040367 339 AFKLFDEMQRDGVAADTWTYRT 360 (400)
Q Consensus 339 a~~~~~~~~~~~~~~~~~~~~~ 360 (400)
|++.|++.++ +.|+-.+|..
T Consensus 168 A~~aykKaLe--ldP~Ne~~K~ 187 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESYKS 187 (304)
T ss_pred HHHHHHhhhc--cCCCcHHHHH
Confidence 8888887776 4566555543
No 166
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.13 E-value=0.00013 Score=62.18 Aligned_cols=93 Identities=15% Similarity=0.018 Sum_probs=81.1
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 040367 221 IMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKE 300 (400)
Q Consensus 221 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 300 (400)
-...+...|++++|+..|.++++.. +.+...+..+..+|...|++++|+..++++.... +.+...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence 3456778899999999999999874 3467788888999999999999999999999886 5578889999999999999
Q ss_pred HHHHHHHHHHHHhCC
Q 040367 301 IEGALSLYGEMLSKG 315 (400)
Q Consensus 301 ~~~a~~~~~~~~~~~ 315 (400)
+++|...|+++++.+
T Consensus 86 ~~eA~~~~~~al~l~ 100 (356)
T PLN03088 86 YQTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999999864
No 167
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.13 E-value=0.0027 Score=50.89 Aligned_cols=66 Identities=9% Similarity=-0.037 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhH---HHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 040367 51 DLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTF---TSLIKGLCAESRIMEAAALFTKLRVFG 117 (400)
Q Consensus 51 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~ 117 (400)
+...+-.....+...|++++|.+.|+.+....+. +.... -.++.++.+.+++++|...+++..+..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 3444444555667789999999999999886432 22222 356678889999999999999988773
No 168
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.12 E-value=0.00031 Score=53.25 Aligned_cols=114 Identities=12% Similarity=0.045 Sum_probs=83.9
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 040367 51 DLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPN--AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTL 128 (400)
Q Consensus 51 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 128 (400)
....+..+...+...|++++|...+++..+....+. ...+..+..++.+.|++++|...+++..... +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 345678888889999999999999999987643332 4678888999999999999999999998864 4467777788
Q ss_pred HHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhC
Q 040367 129 INGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDE 174 (400)
Q Consensus 129 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 174 (400)
...+...|+...+..-++.... .+++|.+.+++....
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~---------~~~~A~~~~~~a~~~ 149 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEA---------LFDKAAEYWKQAIRL 149 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHH---------HHHHHHHHHHHHHhh
Confidence 8888888876555444333322 145566666665554
No 169
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.12 E-value=9.4e-05 Score=49.38 Aligned_cols=80 Identities=14% Similarity=0.190 Sum_probs=57.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCC-CCChhhHHHHHHHHHhcC--------CHHHHHHHHHHHHHcCCCCCHHHH
Q 040367 55 YNILINCFCKMGRVSHGFVVLGRILRSCF-TPNAVTFTSLIKGLCAES--------RIMEAAALFTKLRVFGCEPNVFTY 125 (400)
Q Consensus 55 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~ 125 (400)
....|..+...+++...-.+|+.+.+.|+ .|+..+|+.++.+.++.. +.-..+.+|+.|...+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34455556666777777777777777777 677777777777665432 234567788888888888888888
Q ss_pred HHHHHHHHh
Q 040367 126 NTLINGLYR 134 (400)
Q Consensus 126 ~~l~~~~~~ 134 (400)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 888887755
No 170
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=0.0033 Score=52.41 Aligned_cols=259 Identities=11% Similarity=0.018 Sum_probs=156.0
Q ss_pred hHHHHhcCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHH-------
Q 040367 4 FDYMLNMRPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG------- 76 (400)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~------- 76 (400)
+...++..|. ++..|.--+..+..-|++++|.--.+.-.+.. +-....+...-+++...++..+|.+.++
T Consensus 72 yt~Ai~~~pd--~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~ 148 (486)
T KOG0550|consen 72 YTFAIDMCPD--NASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSDLIEAEEKLKSKQAYKA 148 (486)
T ss_pred HHHHHHhCcc--chhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHHHHHHHHHhhhhhhhHH
Confidence 3444555554 56666666666666777777766555444321 1112233333333333333333333332
Q ss_pred --------HHHhcCC-CCChhhHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 040367 77 --------RILRSCF-TPNAVTFTSLI-KGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFE 146 (400)
Q Consensus 77 --------~~~~~~~-~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 146 (400)
....... +|.-..+..+- .++...|+.++|.+.--.+.+.. ..+......-..++.-.++.++|...|+
T Consensus 149 anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~ 227 (486)
T KOG0550|consen 149 ANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQ 227 (486)
T ss_pred hhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHh
Confidence 2222111 23334444443 46667899999998887777654 3344444444456667788899999999
Q ss_pred HHHcCCCCCCcccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHH
Q 040367 147 EMASGNGEFGVEGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQG---VQPNVVTFNVIMD 223 (400)
Q Consensus 147 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~ 223 (400)
+.+..++.....+..-...+.++.....| +-..+.|++..|.+.|.+.+..+ +.++...|.....
T Consensus 228 qal~ldpdh~~sk~~~~~~k~le~~k~~g------------N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~ 295 (486)
T KOG0550|consen 228 QALRLDPDHQKSKSASMMPKKLEVKKERG------------NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRAL 295 (486)
T ss_pred hhhccChhhhhHHhHhhhHHHHHHHHhhh------------hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHh
Confidence 98888777554444433344444443332 34568899999999999988653 4556667777777
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 040367 224 ELCKNGKMDEASRLLDLMIQIGVRPN-AFVYNTLMDGFCLTGRVNRAKELFVSMESMG 280 (400)
Q Consensus 224 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 280 (400)
...+.|+..+|+.--+...+.. +. ...+..-..++.-.++|++|.+-++...+..
T Consensus 296 v~~rLgrl~eaisdc~~Al~iD--~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 296 VNIRLGRLREAISDCNEALKID--SSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred hhcccCCchhhhhhhhhhhhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8888999999998888887642 11 1223333445666788899988888887653
No 171
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.10 E-value=1.4e-05 Score=52.32 Aligned_cols=20 Identities=25% Similarity=0.383 Sum_probs=9.0
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 040367 291 LINGYCKNKEIEGALSLYGE 310 (400)
Q Consensus 291 l~~~~~~~~~~~~a~~~~~~ 310 (400)
+..++.+.|++++|..++++
T Consensus 31 la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 34444444444444444443
No 172
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.09 E-value=0.00046 Score=61.58 Aligned_cols=134 Identities=8% Similarity=0.017 Sum_probs=69.8
Q ss_pred CCCHHhHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC--------CHHHHHHHHHHHHh
Q 040367 247 RPNAFVYNTLMDGFCLT-----GRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNK--------EIEGALSLYGEMLS 313 (400)
Q Consensus 247 ~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~ 313 (400)
+.+...|...+.+.... ++...|..+|+++.+.. +-....|..+..++.... +...+.+..++...
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 44555566555553322 22556666666666654 223344444333332211 12233333333222
Q ss_pred C-CCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 040367 314 K-GIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTLRI 383 (400)
Q Consensus 314 ~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 383 (400)
. ..+.+...|..+.......|++++|...++++... .|+...|..+...+...|+.++|.+.+++...
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1 12223445555555555567777777777776664 34666666666677777777777777766665
No 173
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.08 E-value=0.0016 Score=53.74 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=11.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 040367 255 TLMDGFCLTGRVNRAKELFVSMES 278 (400)
Q Consensus 255 ~l~~~~~~~~~~~~a~~~~~~~~~ 278 (400)
.+...+.+.|++++|..+|+++..
T Consensus 160 ~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 160 KAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344445555555555555555443
No 174
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.07 E-value=0.0089 Score=54.94 Aligned_cols=213 Identities=14% Similarity=0.139 Sum_probs=141.3
Q ss_pred HhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHH
Q 040367 27 LAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILIN--CFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIM 104 (400)
Q Consensus 27 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 104 (400)
....+++.+|+.....+.++ .|+... ..++. .+.+.|+.++|..+++.....+.. |..+...+-.+|...++.+
T Consensus 19 ~ld~~qfkkal~~~~kllkk--~Pn~~~-a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKK--HPNALY-AKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHH--CCCcHH-HHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhh
Confidence 45678999999999999877 355432 33333 456899999999999888766544 8889999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH----HHHHHHHHHcCC----------------CCCCc-ccchHH
Q 040367 105 EAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIV----ALNLFEEMASGN----------------GEFGV-EGFVDK 163 (400)
Q Consensus 105 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~----------------~~~~~-~~~~~~ 163 (400)
+|..+|++.... -|+......+..+|.+.+.+.+ |.++++...+.. +.... .-...-
T Consensus 95 ~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 95 EAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred HHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 999999999876 5778888888888888887654 445555433221 00000 122455
Q ss_pred HHHHHHHHHhCC-CCCChHhHHHHHHHHHhcCCHHHHHHHHH-HHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 040367 164 AKELFLQMKDEN-INPDVVTYTSVIRGFCYANDWNEAKCLLI-EMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLM 241 (400)
Q Consensus 164 a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 241 (400)
|.+.++.+.+.+ .--+..-...........|++++|.+++. ...+.-...+...-+.-+..+...+++.+..++-.++
T Consensus 173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 667777776654 11122223333445667889999999994 3333333334444445555666666666666666666
Q ss_pred HHcC
Q 040367 242 IQIG 245 (400)
Q Consensus 242 ~~~~ 245 (400)
...+
T Consensus 253 l~k~ 256 (932)
T KOG2053|consen 253 LEKG 256 (932)
T ss_pred HHhC
Confidence 6554
No 175
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.03 E-value=0.00011 Score=49.15 Aligned_cols=79 Identities=20% Similarity=0.385 Sum_probs=68.0
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC--------ChhhHHHHHHHHHhcCCCCChhhHH
Q 040367 21 NILFGCLAKNKHYDTVLSLFKRLNSTGL-FPDLYTYNILINCFCKMG--------RVSHGFVVLGRILRSCFTPNAVTFT 91 (400)
Q Consensus 21 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 91 (400)
..-|..+...+++...-.+|+.+++.|+ -|+..+|+.++.+.++.. +.-..+.+|+.++..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3446677778999999999999999999 899999999999887653 3446788999999999999999999
Q ss_pred HHHHHHHh
Q 040367 92 SLIKGLCA 99 (400)
Q Consensus 92 ~l~~~~~~ 99 (400)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99987754
No 176
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.01 E-value=0.00036 Score=57.37 Aligned_cols=131 Identities=10% Similarity=0.047 Sum_probs=98.3
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 040367 181 VTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDE-LCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDG 259 (400)
Q Consensus 181 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 259 (400)
.+|..++....+.+..+.|..+|.+..+.+ ..+..+|...... +...++.+.|.++|+...+. +..+...+...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 468888888888888999999999998643 3344555555555 33356777799999999886 56677888888898
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 040367 260 FCLTGRVNRAKELFVSMESMGCTHT---VFSYSILINGYCKNKEIEGALSLYGEMLSK 314 (400)
Q Consensus 260 ~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 314 (400)
+...++.+.|..+|++.... ++++ ...|...+..-.+.|+++.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 89999999999999998865 2222 247888888888899999999999888875
No 177
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=0.00074 Score=53.96 Aligned_cols=100 Identities=15% Similarity=0.083 Sum_probs=47.3
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhh---CcHHHHHHHHHHHHHcCCCCCHHHH
Q 040367 282 THTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEI---HQVERAFKLFDEMQRDGVAADTWTY 358 (400)
Q Consensus 282 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~ 358 (400)
+.|...|..|...|...|+.+.|..-|.+..+.. .+|...+..+..++... ....++..+|+++.+.. +-|....
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 3445555555555555555555555555555442 22344444444333221 12334555555555442 2234444
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHH
Q 040367 359 RTFIDGLCKNSYIVEAVELFRTLRI 383 (400)
Q Consensus 359 ~~l~~~~~~~g~~~~a~~~~~~~~~ 383 (400)
..|...+...|++++|...|+.|++
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHh
Confidence 4445555555555555555555554
No 178
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.97 E-value=0.00028 Score=53.25 Aligned_cols=62 Identities=11% Similarity=0.102 Sum_probs=28.1
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 040367 218 FNVIMDELCKNGKMDEASRLLDLMIQIGVRP--NAFVYNTLMDGFCLTGRVNRAKELFVSMESM 279 (400)
Q Consensus 218 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 279 (400)
+..+...+...|++++|...+++.......+ ...++..+..++...|++++|...+++....
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3344444444455555555555554432111 1123444445555555555555555555443
No 179
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.97 E-value=0.00083 Score=46.72 Aligned_cols=91 Identities=16% Similarity=0.105 Sum_probs=41.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CchhhHHHHHHHHHh
Q 040367 257 MDGFCLTGRVNRAKELFVSMESMGCTHT--VFSYSILINGYCKNKEIEGALSLYGEMLSKGIK--PDVVIYNTLFVVLFE 332 (400)
Q Consensus 257 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~ 332 (400)
..++-..|+.++|+.+|++....|.... ...+-.+..++...|++++|..++++....... .+......+..++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 3444455555555555555555443222 223334445555555555555555555543111 011111222234444
Q ss_pred hCcHHHHHHHHHHHH
Q 040367 333 IHQVERAFKLFDEMQ 347 (400)
Q Consensus 333 ~~~~~~a~~~~~~~~ 347 (400)
.|+.++|+..+-...
T Consensus 88 ~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 88 LGRPKEALEWLLEAL 102 (120)
T ss_pred CCCHHHHHHHHHHHH
Confidence 555555555554433
No 180
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.96 E-value=1.3e-05 Score=40.80 Aligned_cols=29 Identities=21% Similarity=0.518 Sum_probs=22.7
Q ss_pred hHHHHHHHHhccCChhHHHHHHHHHHhCC
Q 040367 19 SFNILFGCLAKNKHYDTVLSLFKRLNSTG 47 (400)
Q Consensus 19 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 47 (400)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 67788888888888888888888877765
No 181
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.96 E-value=1.4e-05 Score=40.72 Aligned_cols=29 Identities=38% Similarity=0.653 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhc
Q 040367 357 TYRTFIDGLCKNSYIVEAVELFRTLRILK 385 (400)
Q Consensus 357 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 385 (400)
+|+.++++|.+.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 46666666666666666666666666554
No 182
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.93 E-value=6.5e-05 Score=46.77 Aligned_cols=63 Identities=17% Similarity=0.166 Sum_probs=40.5
Q ss_pred HhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcccchhHHHHHH
Q 040367 331 FEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTLRILKCELDIRAYNCL 396 (400)
Q Consensus 331 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 396 (400)
...|++++|+++|+++.+.. +-+...+..+..+|.+.|++++|.++++++... .|+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 35677777777777777652 335666667777777777777777777777753 4554444444
No 183
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.92 E-value=0.00093 Score=59.70 Aligned_cols=137 Identities=10% Similarity=-0.003 Sum_probs=96.8
Q ss_pred CCChhhHHHHHHHHhcc-----CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--------ChhhHHHHHHHHHh
Q 040367 14 PPPVCSFNILFGCLAKN-----KHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG--------RVSHGFVVLGRILR 80 (400)
Q Consensus 14 ~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~ 80 (400)
|.|..+|...+++.... ++...|..+|+++.+.. +.....|..+..++.... +...+.+..++...
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 36889999998875442 23778999999999874 224556665544443321 22334444444333
Q ss_pred c-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCC
Q 040367 81 S-CFTPNAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNG 153 (400)
Q Consensus 81 ~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 153 (400)
. ....+...+..+.-.....|++++|...+++..+.+ |+...|..+...+...|+.++|...+++....++
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 2 123455778877777778899999999999999885 6889999999999999998888888777765443
No 184
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=0.00071 Score=54.06 Aligned_cols=99 Identities=12% Similarity=0.010 Sum_probs=55.9
Q ss_pred ChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CChhhHHHHHHHHHhcCCCCChhhHHH
Q 040367 16 PVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKM---GRVSHGFVVLGRILRSCFTPNAVTFTS 92 (400)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~ 92 (400)
|...|-.|..+|.+.|+++.|..-|....+.. +++...+..+..++... ....++.++++++++.+ +.|+.+...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHH
Confidence 66666666666666666666666666665552 34555555555444332 22445566666666553 334555555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 040367 93 LIKGLCAESRIMEAAALFTKLRVF 116 (400)
Q Consensus 93 l~~~~~~~~~~~~a~~~~~~~~~~ 116 (400)
|...+...|++.+|...|+.|.+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc
Confidence 555666666666666666666655
No 185
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.90 E-value=0.0013 Score=45.74 Aligned_cols=109 Identities=17% Similarity=0.102 Sum_probs=74.4
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCC--CChhhHHHHHHH
Q 040367 21 NILFGCLAKNKHYDTVLSLFKRLNSTGLFPD--LYTYNILINCFCKMGRVSHGFVVLGRILRSCFT--PNAVTFTSLIKG 96 (400)
Q Consensus 21 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~ 96 (400)
.....++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..+++........ .+......+..+
T Consensus 5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 5 YELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHH
Confidence 3455677778899999999999988876544 345667778888899999999999888765211 122233334456
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 040367 97 LCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLY 133 (400)
Q Consensus 97 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 133 (400)
+...|+.++|++.+-.... ++...|..-|..|.
T Consensus 85 L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred HHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 6788899998888876653 33345555555554
No 186
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.90 E-value=0.0064 Score=47.43 Aligned_cols=173 Identities=15% Similarity=0.090 Sum_probs=100.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 040367 182 TYTSVIRGFCYANDWNEAKCLLIEMMDQGV--QPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDG 259 (400)
Q Consensus 182 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 259 (400)
.+-.....+...|++.+|++.|+.+...-. +--....-.++.++.+.|+++.|...+++.++.........+...+.+
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g 86 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLG 86 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHH
Confidence 344455667788999999999999887521 222345566778888999999999999998876332222222222222
Q ss_pred HHhcCC-------------HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHH
Q 040367 260 FCLTGR-------------VNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTL 326 (400)
Q Consensus 260 ~~~~~~-------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 326 (400)
.+.... ..+|... +..++.-|-...-..+|...+..+.+. =...--.+
T Consensus 87 ~~~~~~~~~~~~~~~D~~~~~~A~~~---------------~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~i 147 (203)
T PF13525_consen 87 LSYYKQIPGILRSDRDQTSTRKAIEE---------------FEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYI 147 (203)
T ss_dssp HHHHHHHHHHH-TT---HHHHHHHHH---------------HHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHH
T ss_pred HHHHHhCccchhcccChHHHHHHHHH---------------HHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 211111 1222222 344444454555556665555554432 01111235
Q ss_pred HHHHHhhCcHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCcHHHHH
Q 040367 327 FVVLFEIHQVERAFKLFDEMQRDGVAAD----TWTYRTFIDGLCKNSYIVEAV 375 (400)
Q Consensus 327 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~ 375 (400)
...|.+.|.+..|..-++.+++. -|+ ......++.+|.+.|..+.+.
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 67888999999999999999886 233 344567788888888887543
No 187
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.86 E-value=0.00029 Score=55.97 Aligned_cols=92 Identities=10% Similarity=-0.002 Sum_probs=54.1
Q ss_pred HHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 040367 61 CFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIV 140 (400)
Q Consensus 61 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 140 (400)
-+.+.+++++|+..|.++++.. +-|...|..-..+|.+.|.++.|++-.+..+..+ +-...+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHH
Confidence 3445566666666666666553 2245555555666666666666666666555443 2244566666666666666666
Q ss_pred HHHHHHHHHcCCCC
Q 040367 141 ALNLFEEMASGNGE 154 (400)
Q Consensus 141 a~~~~~~~~~~~~~ 154 (400)
|++.|++.+..++.
T Consensus 168 A~~aykKaLeldP~ 181 (304)
T KOG0553|consen 168 AIEAYKKALELDPD 181 (304)
T ss_pred HHHHHHhhhccCCC
Confidence 66666666655554
No 188
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.85 E-value=0.0043 Score=48.54 Aligned_cols=132 Identities=13% Similarity=0.113 Sum_probs=70.6
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHH----
Q 040367 217 TFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILI---- 292 (400)
Q Consensus 217 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~---- 292 (400)
..+.++.++.-.|.+.-....+++.++...+.++.....|++.-.+.||.+.|...|++..+..-..+....+.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3444555555556666666666666665545556666666666666666666666666554432233333333222
Q ss_pred -HHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHc
Q 040367 293 -NGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRD 349 (400)
Q Consensus 293 -~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 349 (400)
..|.-.+++..|...+.+..+.+.. |....|.-.-+..-.|+...|++.++.|...
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2334455666666666665554322 3344444444444466666666666666654
No 189
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.84 E-value=0.00018 Score=44.92 Aligned_cols=63 Identities=17% Similarity=0.130 Sum_probs=40.1
Q ss_pred hhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-cHHHHHHHHHHHHH
Q 040367 320 VVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNS-YIVEAVELFRTLRI 383 (400)
Q Consensus 320 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~ 383 (400)
..+|..+...+...|++++|+..|++.++.. +.+...|..+..++...| ++++|++.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4556666666666677777777776666652 224556666666666666 56677766666654
No 190
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.82 E-value=0.0023 Score=49.90 Aligned_cols=62 Identities=13% Similarity=0.118 Sum_probs=33.0
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 040367 20 FNILFGCLAKNKHYDTVLSLFKRLNSTGL--FPDLYTYNILINCFCKMGRVSHGFVVLGRILRS 81 (400)
Q Consensus 20 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 81 (400)
.-.....+.+.|++.+|+..|+.+..... +-...+.-.++.++.+.|+++.|...+++.++.
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33344455566666666666666655421 112334455556666666666666666666654
No 191
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.80 E-value=0.0069 Score=44.77 Aligned_cols=156 Identities=11% Similarity=0.012 Sum_probs=106.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCH
Q 040367 187 IRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRV 266 (400)
Q Consensus 187 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 266 (400)
..+..+.=|++...+-..+-.+ ..|+...-..+..+....|++.+|...|++...--+..|....-.+.++....+++
T Consensus 63 ~~a~~q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~ 140 (251)
T COG4700 63 LMALQQKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEF 140 (251)
T ss_pred HHHHHHhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccH
Confidence 3334444445444433333332 35677777778888888999999999998888765666778888888888888999
Q ss_pred HHHHHHHHHHHhcCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHH
Q 040367 267 NRAKELFVSMESMGC-THTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDE 345 (400)
Q Consensus 267 ~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 345 (400)
..|...++++.+... .-++.+.-.+.+.+...|.+..|..-|+..... -|+...-......+.+.|+.+++..-+..
T Consensus 141 A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 141 AAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 999988888876531 113344556778888889998899888888876 34544444455566677776666544443
Q ss_pred H
Q 040367 346 M 346 (400)
Q Consensus 346 ~ 346 (400)
.
T Consensus 219 v 219 (251)
T COG4700 219 V 219 (251)
T ss_pred H
Confidence 3
No 192
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.80 E-value=0.00016 Score=44.47 Aligned_cols=55 Identities=11% Similarity=0.142 Sum_probs=27.6
Q ss_pred HHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 040367 328 VVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTLRI 383 (400)
Q Consensus 328 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 383 (400)
..+...|++++|...|+++++.. +-+...+..+..++...|++++|...|+++.+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445555555555555555442 22344555555555555555555555555543
No 193
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.76 E-value=0.0013 Score=50.04 Aligned_cols=104 Identities=20% Similarity=0.302 Sum_probs=61.6
Q ss_pred CCCHHhHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchh
Q 040367 247 RPNAFVYNTLMDGFCLT-----GRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVV 321 (400)
Q Consensus 247 ~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 321 (400)
..+..+|..+++.|.+. |..+-....++.|.+.|+..|..+|+.|++.+=+ |.+- |. .
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~-n 106 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PR-N 106 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------cc-c
Confidence 34667777777777644 5566666667777777777777777777776654 2211 00 0
Q ss_pred hHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 040367 322 IYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNS 369 (400)
Q Consensus 322 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 369 (400)
.+..+..- .-.+-+-|++++++|...|+-||..++..+++.+.+.+
T Consensus 107 ~fQ~~F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 107 FFQAEFMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHhcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 00111111 12334556777777777777777777777777775544
No 194
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.75 E-value=0.00017 Score=44.86 Aligned_cols=51 Identities=18% Similarity=0.156 Sum_probs=22.1
Q ss_pred cCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 040367 65 MGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKLRVF 116 (400)
Q Consensus 65 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 116 (400)
.|++++|++.|+.+.... +.+...+..++.+|.+.|++++|.++++++...
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344444444444444432 113334444444444444444444444444443
No 195
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.73 E-value=0.00034 Score=43.02 Aligned_cols=57 Identities=9% Similarity=0.210 Sum_probs=32.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHc
Q 040367 292 INGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRD 349 (400)
Q Consensus 292 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 349 (400)
...+.+.|++++|.+.|+++++.. +-+...+..+..++...|++++|..+|+++++.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345556666666666666666554 225555556666666666666666666666543
No 196
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.73 E-value=0.00022 Score=44.51 Aligned_cols=62 Identities=15% Similarity=0.073 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHH
Q 040367 52 LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAES-RIMEAAALFTKLR 114 (400)
Q Consensus 52 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~ 114 (400)
...|..+...+...|++++|+..|++.++.+ +.+...|..+..++...| ++++|++.+++..
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 3344444444555555555555555544443 223444444444444444 3445554444444
No 197
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.73 E-value=0.0016 Score=47.80 Aligned_cols=72 Identities=21% Similarity=0.228 Sum_probs=53.6
Q ss_pred hHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH-----HhcccchhHHHH
Q 040367 322 IYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTLR-----ILKCELDIRAYN 394 (400)
Q Consensus 322 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~p~~~~~~ 394 (400)
....++..+...|++++|..+.+.+... -+.+...|..++.+|...|+..+|.++|+++. +.|+.|+..+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~-dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALAL-DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 4456677778899999999999999987 34478899999999999999999999999885 568899887643
No 198
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.65 E-value=0.0065 Score=44.58 Aligned_cols=71 Identities=20% Similarity=0.323 Sum_probs=46.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH-----cCCCCCHHhH
Q 040367 182 TYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQ-----IGVRPNAFVY 253 (400)
Q Consensus 182 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 253 (400)
+...++..+...|++++|....+.+.... |.+...|..+|.++...|+...|.++|+++.. .|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 45566667777888888888888887764 55777788888888888888888888777643 2677766543
No 199
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.65 E-value=0.0013 Score=49.97 Aligned_cols=87 Identities=21% Similarity=0.238 Sum_probs=58.2
Q ss_pred CCChHhHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC----------------ChHHHH
Q 040367 177 NPDVVTYTSVIRGFCY-----ANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNG----------------KMDEAS 235 (400)
Q Consensus 177 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------~~~~a~ 235 (400)
..+..+|..+++.|.+ .|..+-....+..|.+-|+.-|..+|+.|++.+=+.. +-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 3477788888888764 4778888888888888899999999999998775421 223345
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHhc
Q 040367 236 RLLDLMIQIGVRPNAFVYNTLMDGFCLT 263 (400)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 263 (400)
+++++|...|+-||..++..+++.+.+.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~ 151 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRK 151 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccc
Confidence 5555555555555555555555555443
No 200
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.64 E-value=0.013 Score=43.34 Aligned_cols=134 Identities=13% Similarity=0.012 Sum_probs=105.6
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CchhhHH
Q 040367 246 VRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIK-PDVVIYN 324 (400)
Q Consensus 246 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~ 324 (400)
..|+...-..|..+....|+..+|...|.+...--...|....-.+.++....+++..|...++++.+.+.. -++.+.-
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 457777777899999999999999999999987666678888889999999999999999999999886311 1223345
Q ss_pred HHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 040367 325 TLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTL 381 (400)
Q Consensus 325 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 381 (400)
.+.+.+...|++..|..-|+.+... -|+...-......+.++|+.+++..-+..+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 6778999999999999999999986 556555555566678888777665544444
No 201
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.63 E-value=0.019 Score=45.07 Aligned_cols=130 Identities=7% Similarity=-0.016 Sum_probs=63.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHH-----HHH
Q 040367 184 TSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNT-----LMD 258 (400)
Q Consensus 184 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----l~~ 258 (400)
+.++.++.-.|.+.-....+.+.++...+.++.....+.+.-.+.|+.+.|...|++..+..-..+...++. ...
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 344444445555555555555555554444555555555555556666666666655544322222222222 222
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 040367 259 GFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSK 314 (400)
Q Consensus 259 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 314 (400)
.|.-++++..|...+.++...+ +.++...|.-.-+..-.|+...|.+.++.|.+.
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred heecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444455555555555555443 333333333333333345556666666555553
No 202
>PRK15331 chaperone protein SicA; Provisional
Probab=97.62 E-value=0.012 Score=42.92 Aligned_cols=89 Identities=15% Similarity=0.027 Sum_probs=59.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHH
Q 040367 258 DGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVE 337 (400)
Q Consensus 258 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 337 (400)
.-+...|++++|..+|+-+...+ +.+..-|..|..++-..+++++|...|......+. -|+..+-....++...|+.+
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHH
Confidence 33456777777777777776655 44566666777777777777777777776655443 24444455667777777777
Q ss_pred HHHHHHHHHHH
Q 040367 338 RAFKLFDEMQR 348 (400)
Q Consensus 338 ~a~~~~~~~~~ 348 (400)
.|...|+....
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 77777777766
No 203
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.62 E-value=0.032 Score=47.18 Aligned_cols=170 Identities=14% Similarity=0.109 Sum_probs=99.6
Q ss_pred HHHHHHhccCChhHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHh---cCChhhHHHHHHHHHhcCCCCChhhHHHHHH
Q 040367 22 ILFGCLAKNKHYDTVLSLFKRLNSTG---LFPDLYTYNILINCFCK---MGRVSHGFVVLGRILRSCFTPNAVTFTSLIK 95 (400)
Q Consensus 22 ~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 95 (400)
.++-.|....+++..+++.+.+.... +..+...-....-++-+ .|+.++|++++..+......++..++..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 44446888888888999888887651 11123333344455556 7888889988888665555677888887777
Q ss_pred HHHh---------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHH
Q 040367 96 GLCA---------ESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKE 166 (400)
Q Consensus 96 ~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~ 166 (400)
.|-. ...+++|...|.+.-+. .|+...-..++..+...|.......-++++ ..
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i----------------~~ 287 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKI----------------GV 287 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHH----------------HH
Confidence 6542 12356777777765544 355544444444444444422221111111 11
Q ss_pred HHHH-HHhCC---CCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 040367 167 LFLQ-MKDEN---INPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQ 209 (400)
Q Consensus 167 ~~~~-~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 209 (400)
.+.. +.+.| -..+-..+..++.++.-.|+.++|.+..++|.+.
T Consensus 288 ~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 288 KLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 1111 11111 2345666777778888888888888888888765
No 204
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.52 E-value=0.0024 Score=51.57 Aligned_cols=90 Identities=10% Similarity=-0.016 Sum_probs=37.4
Q ss_pred HhcCChhhHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCh
Q 040367 63 CKMGRVSHGFVVLGRILRSCFTPN--AVTFTSLIKGLCAESRIMEAAALFTKLRVFG--CEPNVFTYNTLINGLYRTGHT 138 (400)
Q Consensus 63 ~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~ 138 (400)
.+.|++++|...|+.+++..+... ...+-.+...|...|++++|...|+.+.+.. -+.....+..+...+...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 334444444444444444321100 1233344444444455555555444444321 011233333334444444555
Q ss_pred HHHHHHHHHHHcCC
Q 040367 139 IVALNLFEEMASGN 152 (400)
Q Consensus 139 ~~a~~~~~~~~~~~ 152 (400)
++|...|+.+....
T Consensus 234 ~~A~~~~~~vi~~y 247 (263)
T PRK10803 234 AKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHHHHHHHHC
Confidence 55555555444443
No 205
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.52 E-value=0.0042 Score=50.27 Aligned_cols=87 Identities=8% Similarity=-0.016 Sum_probs=39.3
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCchhhHHHHHHHHHhhC
Q 040367 261 CLTGRVNRAKELFVSMESMGCTHT----VFSYSILINGYCKNKEIEGALSLYGEMLSKGI--KPDVVIYNTLFVVLFEIH 334 (400)
Q Consensus 261 ~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~ 334 (400)
.+.|++++|...|+.+.+.. |+ ...+..+..+|...|++++|...|+.+.+.-. +.....+-.++..+...|
T Consensus 154 ~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC
Confidence 34455555555555555442 22 12444455555555555555555555544311 011222233334444455
Q ss_pred cHHHHHHHHHHHHHc
Q 040367 335 QVERAFKLFDEMQRD 349 (400)
Q Consensus 335 ~~~~a~~~~~~~~~~ 349 (400)
+.+.|...++.+++.
T Consensus 232 ~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 232 DTAKAKAVYQQVIKK 246 (263)
T ss_pred CHHHHHHHHHHHHHH
Confidence 555555555555443
No 206
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.45 E-value=0.051 Score=45.48 Aligned_cols=63 Identities=16% Similarity=0.182 Sum_probs=37.9
Q ss_pred hHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHH
Q 040367 19 SFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIK 95 (400)
Q Consensus 19 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 95 (400)
+|..+.......|+.+-|..+++ ..|+.. .-+-.+.+.|+.+.| +.+..+.| .||. +|..++.
T Consensus 2 S~a~IA~~A~~~GR~~LA~~LL~------~Ep~~~---~qVplLL~m~e~e~A---L~kAi~Sg-D~DL-i~~vLl~ 64 (319)
T PF04840_consen 2 SYAEIARKAYEEGRPKLATKLLE------LEPRAS---KQVPLLLKMGEDELA---LNKAIESG-DTDL-IYLVLLH 64 (319)
T ss_pred CHHHHHHHHHHcChHHHHHHHHH------cCCChH---HHHHHHhcCCchHHH---HHHHHHcC-CccH-HHHHHHH
Confidence 56777777788888888877653 245543 335556667777666 45555554 3332 3444444
No 207
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.43 E-value=0.018 Score=51.19 Aligned_cols=261 Identities=13% Similarity=0.063 Sum_probs=131.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHH
Q 040367 90 FTSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFL 169 (400)
Q Consensus 90 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 169 (400)
+.+-+..|.+.|.+++|.++- +.-....-|..|.......=+++-|.+.|.+..... +-+.+.-++
T Consensus 559 ~~~~m~q~Ieag~f~ea~~ia------clgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~--------~L~li~EL~ 624 (1081)
T KOG1538|consen 559 QSAPMYQYIERGLFKEAYQIA------CLGVTDTDWRELAMEALEALDFETARKAYIRVRDLR--------YLELISELE 624 (1081)
T ss_pred ccccchhhhhccchhhhhccc------ccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccH--------HHHHHHHHH
Confidence 333444566667777665432 112233345555555555555666666555543321 344455566
Q ss_pred HHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhCCChHHHHHHHHHHHH--
Q 040367 170 QMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQP----NVVTFNVIMDELCKNGKMDEASRLLDLMIQ-- 243 (400)
Q Consensus 170 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-- 243 (400)
++.++|-.|+.. .+...|+-.|++.+|-++|.+--..+-.. |...| ....-+...|..++-..+.++-.+
T Consensus 625 ~~k~rge~P~~i---LlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMF-D~aQE~~~~g~~~eKKmL~RKRA~WA 700 (1081)
T KOG1538|consen 625 ERKKRGETPNDL---LLADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMF-DYAQEFLGSGDPKEKKMLIRKRADWA 700 (1081)
T ss_pred HHHhcCCCchHH---HHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHH-HHHHHHhhcCChHHHHHHHHHHHHHh
Confidence 677777667644 24456667788888888876532221000 00111 112223333433333222221111
Q ss_pred cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH------HHhcCC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 040367 244 IGVRPNAFVYNTLMDGFCLTGRVNRAKELFVS------MESMGC---THTVFSYSILINGYCKNKEIEGALSLYGEMLSK 314 (400)
Q Consensus 244 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~------~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 314 (400)
.++... ......+...|+.++|..+..+ +.+.+. ..+..+...+...+.+...+.-|-++|+.|-+.
T Consensus 701 r~~keP----kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~ 776 (1081)
T KOG1538|consen 701 RNIKEP----KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL 776 (1081)
T ss_pred hhcCCc----HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH
Confidence 011111 1233444556666666554321 111111 223344444555555666677777777766432
Q ss_pred CCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCH-----------HHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 040367 315 GIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADT-----------WTYRTFIDGLCKNSYIVEAVELFRTLRI 383 (400)
Q Consensus 315 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 383 (400)
..+++.....+++++|..+-++..+. .||. .-|...-.+|.+.|+..+|.++++++..
T Consensus 777 ---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 777 ---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred ---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 34566666778888887777665442 2221 2234455677888888888888887764
No 208
>PRK15331 chaperone protein SicA; Provisional
Probab=97.38 E-value=0.012 Score=43.03 Aligned_cols=91 Identities=10% Similarity=-0.072 Sum_probs=75.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCc
Q 040367 291 LINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSY 370 (400)
Q Consensus 291 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 370 (400)
...-+...|++++|..+|+-+...++- +..-|..|..++-..+++++|+..+..+...+. .|+..+-....++...|+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCC
Confidence 344456789999999999998887644 666788888899999999999999998776543 345556678889999999
Q ss_pred HHHHHHHHHHHHH
Q 040367 371 IVEAVELFRTLRI 383 (400)
Q Consensus 371 ~~~a~~~~~~~~~ 383 (400)
.+.|...|+...+
T Consensus 121 ~~~A~~~f~~a~~ 133 (165)
T PRK15331 121 AAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999987
No 209
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.33 E-value=0.002 Score=40.67 Aligned_cols=53 Identities=13% Similarity=0.057 Sum_probs=24.2
Q ss_pred HHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 040367 330 LFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTLRI 383 (400)
Q Consensus 330 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 383 (400)
+.+.+++++|.++++.+...+ +.+...+.....++.+.|++++|.+.+++..+
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344444444444444444431 22334444444444444555555555544443
No 210
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.30 E-value=0.0013 Score=42.10 Aligned_cols=63 Identities=19% Similarity=0.195 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHhhCcHHHHHHHHHHHHHc----CC-CCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 040367 321 VIYNTLFVVLFEIHQVERAFKLFDEMQRD----GV-AAD-TWTYRTFIDGLCKNSYIVEAVELFRTLRI 383 (400)
Q Consensus 321 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 383 (400)
.+++.+...+...|++++|++.|++..+. |- .|+ ..++..+..++...|++++|++.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34566666666667777776666665532 11 111 44566666677777777777777766653
No 211
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.29 E-value=0.0021 Score=40.52 Aligned_cols=55 Identities=18% Similarity=0.280 Sum_probs=31.1
Q ss_pred HHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 040367 26 CLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRS 81 (400)
Q Consensus 26 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 81 (400)
.+.+.++++.|++.++.+...+ |.+...+.....++...|++++|.+.++...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4555566666666666665553 334455555555555666666666666655554
No 212
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.25 E-value=0.091 Score=43.99 Aligned_cols=103 Identities=10% Similarity=0.097 Sum_probs=53.0
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 040367 220 VIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNK 299 (400)
Q Consensus 220 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 299 (400)
..+.-+...|+...|.++-.+. -.|+...|..-+.+++..++|++-..+... +.++..|...+.+|.+.|
T Consensus 182 ~Ti~~li~~~~~k~A~kl~k~F----kv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 182 DTIRKLIEMGQEKQAEKLKKEF----KVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYG 251 (319)
T ss_pred HHHHHHHHCCCHHHHHHHHHHc----CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCC
Confidence 3344445555555555554443 124555566666666666666555443221 123455666666666666
Q ss_pred CHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHH
Q 040367 300 EIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKL 342 (400)
Q Consensus 300 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 342 (400)
+..+|..+..++ + +..-+..|.+.|++.+|.+.
T Consensus 252 ~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 252 NKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred CHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHH
Confidence 666666555441 1 13334555556666665554
No 213
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.24 E-value=0.15 Score=46.20 Aligned_cols=328 Identities=13% Similarity=0.008 Sum_probs=165.0
Q ss_pred CChhhHHHHHHHHhccCChhHHHHHHHHHHhC-CCCC--------CHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC
Q 040367 15 PPVCSFNILFGCLAKNKHYDTVLSLFKRLNST-GLFP--------DLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTP 85 (400)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 85 (400)
|-+..|..+.....+.-.++.|...|-+...- |++. +...-.+ ..-.--|++++|.++|-.+-+.+
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~a--ei~~~~g~feeaek~yld~drrD--- 764 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRA--EISAFYGEFEEAEKLYLDADRRD--- 764 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhH--hHhhhhcchhHhhhhhhccchhh---
Confidence 55667777777777777777777776655432 2210 0000111 11122467777777776665442
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHH
Q 040367 86 NAVTFTSLIKGLCAESRIMEAAALFTKLRVF-GCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKA 164 (400)
Q Consensus 86 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a 164 (400)
..+..+.+.|++-.+.++++.--.. .-..-...|+.+...++....++.|.++|........ .-++
T Consensus 765 ------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~-------~~ec 831 (1189)
T KOG2041|consen 765 ------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTEN-------QIEC 831 (1189)
T ss_pred ------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHh-------HHHH
Confidence 3455566677777666665431100 0011245677777777777788888777766422110 1111
Q ss_pred ---HHHHHHHH--hCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHH
Q 040367 165 ---KELFLQMK--DENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLD 239 (400)
Q Consensus 165 ---~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 239 (400)
.+.|..+. ...++.+....-.+..++.+.|.-++|.+.+-+... | ...+..|...+++.+|.++-+
T Consensus 832 ly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQW~~avelaq 902 (1189)
T KOG2041|consen 832 LYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQWGEAVELAQ 902 (1189)
T ss_pred HHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHHHHHHHHHHH
Confidence 12222221 123455666677777888888888887776644321 2 234556777777777776655
Q ss_pred HHHHcCCCCCHHh--------------HHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCCh----hhHHHHH-HHHH
Q 040367 240 LMIQIGVRPNAFV--------------YNTLMDGFCLTGRVNRAKELFVSMESM----GCTHTV----FSYSILI-NGYC 296 (400)
Q Consensus 240 ~~~~~~~~~~~~~--------------~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~----~~~~~l~-~~~~ 296 (400)
+..- |...+ ...-|..+.+.|++-.|.+++.+|.+. +.++-. .+..+++ .-+.
T Consensus 903 ~~~l----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~ 978 (1189)
T KOG2041|consen 903 RFQL----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHR 978 (1189)
T ss_pred hccc----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHH
Confidence 4321 11111 112344556667766777777766442 222211 1111111 1111
Q ss_pred ----------hcCCHHHHHHHHHHHHhC---CCC------CchhhHHHHHHHHHhhCcHHHHHHHHHHHHHc-CCCCCHH
Q 040367 297 ----------KNKEIEGALSLYGEMLSK---GIK------PDVVIYNTLFVVLFEIHQVERAFKLFDEMQRD-GVAADTW 356 (400)
Q Consensus 297 ----------~~~~~~~a~~~~~~~~~~---~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~ 356 (400)
..|..++|..+++...-. .+. .....|..+.+-....|..+.|+..--.+.+. .+-|...
T Consensus 979 ~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~e 1058 (1189)
T KOG2041|consen 979 QTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAE 1058 (1189)
T ss_pred HHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHH
Confidence 223444444433322110 000 01223334444455667777777654444432 3567778
Q ss_pred HHHHHHHHHHhcCcHHH
Q 040367 357 TYRTFIDGLCKNSYIVE 373 (400)
Q Consensus 357 ~~~~l~~~~~~~g~~~~ 373 (400)
+|+.+..+-+....+.-
T Consensus 1059 iySllALaaca~raFGt 1075 (1189)
T KOG2041|consen 1059 IYSLLALAACAVRAFGT 1075 (1189)
T ss_pred HHHHHHHHHhhhhhhhh
Confidence 88877666555544433
No 214
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.19 E-value=0.015 Score=41.03 Aligned_cols=99 Identities=10% Similarity=-0.004 Sum_probs=63.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHH
Q 040367 121 NVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAK 200 (400)
Q Consensus 121 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 200 (400)
|..++..++.++++.|+.+....+++..-..+......+.. .-......|+..+..+++.+|+..|++..|+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~--------~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al 72 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGD--------YPPSSPLYPTSRLLIAIVHSFGYNGDIFSAL 72 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCc--------cCCCCCCCCCHHHHHHHHHHHHhcccHHHHH
Confidence 34556666666666666666666665543332221111110 1123346788889999999999999999999
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHHHh
Q 040367 201 CLLIEMMDQ-GVQPNVVTFNVIMDELCK 227 (400)
Q Consensus 201 ~~~~~~~~~-~~~~~~~~~~~l~~~~~~ 227 (400)
++++...+. +++.+..+|..|+.-+..
T Consensus 73 ~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 73 KLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 999887653 566677888888875544
No 215
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.19 E-value=0.11 Score=43.99 Aligned_cols=166 Identities=12% Similarity=0.011 Sum_probs=101.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHh---CCChHHHHHHHHHHHHcCCCCCHHhHHH
Q 040367 182 TYTSVIRGFCYANDWNEAKCLLIEMMDQG---VQPNVVTFNVIMDELCK---NGKMDEASRLLDLMIQIGVRPNAFVYNT 255 (400)
Q Consensus 182 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 255 (400)
+...++-.|....+++..+++++.+.... +......-....-++.+ .|+.++|.+++..+......+++.++..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 44456667999999999999999998752 22233333344556667 8999999999999776666778888888
Q ss_pred HHHHHHhc---------CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC-HH---HHHHHH---H-HHHhCCC--
Q 040367 256 LMDGFCLT---------GRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKE-IE---GALSLY---G-EMLSKGI-- 316 (400)
Q Consensus 256 l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~---~a~~~~---~-~~~~~~~-- 316 (400)
+...|-.. ...++|...|.+.-+.. |+..+--.++..+...|. .+ +..++- . .+.++|.
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 87766422 23677777777766543 443322222222222332 11 222222 1 1112232
Q ss_pred -CCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHc
Q 040367 317 -KPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRD 349 (400)
Q Consensus 317 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 349 (400)
..+.-.+.+++.+..-.|++++|.+..++|.+.
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 223334456777777788888888888888875
No 216
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.16 E-value=0.19 Score=45.88 Aligned_cols=331 Identities=11% Similarity=0.063 Sum_probs=172.6
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh--hhHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 040367 21 NILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV--SHGFVVLGRILRSCFTPNAVTFTSLIKGLC 98 (400)
Q Consensus 21 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 98 (400)
..++.-+...+.+..|+++-..+...-... ...|......+.+..+. +++++..++=++... -....|........
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay 518 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAY 518 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHH
Confidence 345666777777788887777665332121 45566666666555322 222222222222211 23445666666666
Q ss_pred hcCCHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCC---CcccchHHHHHHHHHH
Q 040367 99 AESRIMEAAALFTKLRVFGC----EPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEF---GVEGFVDKAKELFLQM 171 (400)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~a~~~~~~~ 171 (400)
..|+++-|..+++.=...+. -.+..-+...+.-+.+.|+.+-...++-.+...-... ....+...|..+|.+.
T Consensus 519 ~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~ 598 (829)
T KOG2280|consen 519 QEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQF 598 (829)
T ss_pred hcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHH
Confidence 78888888877664222210 0122233445555666666666666655554311000 0000112222222222
Q ss_pred HhCCCCCChHhHHHHHHHHHhcCCHHHHHHHH-HHHHh----CCCCCCHHHHHHHHHHHHhCCChH----------HHHH
Q 040367 172 KDENINPDVVTYTSVIRGFCYANDWNEAKCLL-IEMMD----QGVQPNVVTFNVIMDELCKNGKMD----------EASR 236 (400)
Q Consensus 172 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~----------~a~~ 236 (400)
.+.. +.. .+-..|.+..+...+-.+. +...+ .+..|+ .....+.+.+..... +-++
T Consensus 599 ~r~~---~~~---~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ed~~kLl~ 669 (829)
T KOG2280|consen 599 MRHQ---DRA---TLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKALEDQMKLLK 669 (829)
T ss_pred HHhh---chh---hhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Confidence 2210 000 0111122222222221111 11111 122222 233344444433311 1112
Q ss_pred HHHHHHHc-CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 040367 237 LLDLMIQI-GVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKG 315 (400)
Q Consensus 237 ~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 315 (400)
+.+.+... |......+.+--+.-+...|+..+|.++-.+.. -|+...|-.=+.+++..+++++-+++-+...
T Consensus 670 lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk--- 742 (829)
T KOG2280|consen 670 LQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK--- 742 (829)
T ss_pred HHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---
Confidence 22222221 222233445555666778899999999888776 7888889888999999999998887755443
Q ss_pred CCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 040367 316 IKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTL 381 (400)
Q Consensus 316 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 381 (400)
.+.-|.-...+|.+.|+.++|.+++-+.... . ....+|.+.|++.+|.++--+-
T Consensus 743 ---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 743 ---SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred ---CCCCchhHHHHHHhcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHHHHh
Confidence 2445677889999999999999988765321 1 4667888889988887764443
No 217
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.13 E-value=0.14 Score=43.84 Aligned_cols=128 Identities=16% Similarity=0.204 Sum_probs=75.0
Q ss_pred HHhCCC-hHHHHHHHHHHHHcCCCCCHHhHHHHH----HHHHh---cCCHHHHHHHHHHHHhcCCCCChh----hHHHHH
Q 040367 225 LCKNGK-MDEASRLLDLMIQIGVRPNAFVYNTLM----DGFCL---TGRVNRAKELFVSMESMGCTHTVF----SYSILI 292 (400)
Q Consensus 225 ~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~ 292 (400)
+-+.|. -++|+++++.+.+-. +-|...-+.+. .+|.+ ...+.+-..+-+-+.+.|++|-.. .-|.|.
T Consensus 389 lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~La 467 (549)
T PF07079_consen 389 LWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLA 467 (549)
T ss_pred HHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHH
Confidence 334444 778888888887741 12332222221 22222 133444444545556666665332 233333
Q ss_pred HH--HHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHH
Q 040367 293 NG--YCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRT 360 (400)
Q Consensus 293 ~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 360 (400)
.+ +...|++.++.-.-..+.+ +.|++.+|..++-++....++++|..++..+ +|+..++++
T Consensus 468 DAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~ds 530 (549)
T PF07079_consen 468 DAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDS 530 (549)
T ss_pred HHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHH
Confidence 22 3467888887766666655 5678888888888888888888888887753 566665553
No 218
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.08 E-value=0.0025 Score=40.83 Aligned_cols=69 Identities=23% Similarity=0.297 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCC-ChHhHHHHHHHHHhcCCHHHHH
Q 040367 122 VFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENINP-DVVTYTSVIRGFCYANDWNEAK 200 (400)
Q Consensus 122 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~ 200 (400)
..+++.+...|...|++++|+..|++ |+++.+..... .| ...++..+..++...|++++|+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~----------------al~~~~~~~~~--~~~~a~~~~~lg~~~~~~g~~~~A~ 66 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEK----------------ALDIEEQLGDD--HPDTANTLNNLGECYYRLGDYEEAL 66 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHH----------------HHHHHHHTTTH--HHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH----------------HHHHHHHHCCC--CHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 45788999999999999999999655 44443333221 22 2667888999999999999999
Q ss_pred HHHHHHHh
Q 040367 201 CLLIEMMD 208 (400)
Q Consensus 201 ~~~~~~~~ 208 (400)
+.+++..+
T Consensus 67 ~~~~~al~ 74 (78)
T PF13424_consen 67 EYYQKALD 74 (78)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99988764
No 219
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.06 E-value=0.23 Score=45.07 Aligned_cols=315 Identities=13% Similarity=0.060 Sum_probs=159.6
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhc-CCCC--------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 040367 49 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRS-CFTP--------NAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCE 119 (400)
Q Consensus 49 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 119 (400)
.|.+..|..+.......-.++.|...|-+.... |++. +...-.+-+. .--|++++|+++|-.+.++.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhhhhhhccchhh--
Confidence 478889999988888877888887777665432 2211 1111112222 23588899999887776542
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHH
Q 040367 120 PNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEA 199 (400)
Q Consensus 120 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 199 (400)
..+..+.+.|++-...++++.- +...+.++ .+ ..++.+-+. -.+...|......|...|+.+.-
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g---~~d~dD~~-~e---~A~r~ig~~--fa~~~~We~A~~yY~~~~~~e~~ 828 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNG---GSDDDDEG-KE---DAFRNIGET--FAEMMEWEEAAKYYSYCGDTENQ 828 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHcc---CCCcchHH-HH---HHHHHHHHH--HHHHHHHHHHHHHHHhccchHhH
Confidence 3455566667665555444331 11111111 11 112222111 11233444455555555554433
Q ss_pred HHHHHHHH--------hCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 040367 200 KCLLIEMM--------DQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKE 271 (400)
Q Consensus 200 ~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 271 (400)
++.+-.+. ....+.+....-.+..++.+.|.-++|.+.+-+.. .|. ..+.+|...++|.+|.+
T Consensus 829 ~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~pk-----aAv~tCv~LnQW~~ave 899 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS----LPK-----AAVHTCVELNQWGEAVE 899 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc----CcH-----HHHHHHHHHHHHHHHHH
Confidence 33222211 11244556666777788888888888877765432 122 34567777888888887
Q ss_pred HHHHHHhcCCCCChhhH--------------HHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCchh----hHHHH-HH
Q 040367 272 LFVSMESMGCTHTVFSY--------------SILINGYCKNKEIEGALSLYGEMLSK----GIKPDVV----IYNTL-FV 328 (400)
Q Consensus 272 ~~~~~~~~~~~~~~~~~--------------~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~----~~~~l-~~ 328 (400)
+-+... -|...+. -.-|..+.+.|..-.|.+++.+|.+. +.++-.. ...++ +.
T Consensus 900 laq~~~----l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE 975 (1189)
T KOG2041|consen 900 LAQRFQ----LPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVE 975 (1189)
T ss_pred HHHhcc----chhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHH
Confidence 765543 2222221 11233455566665666666666543 3332211 11111 11
Q ss_pred HH----------HhhCcHHHHHHHHHHHHHc---CCC------CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-cccc
Q 040367 329 VL----------FEIHQVERAFKLFDEMQRD---GVA------ADTWTYRTFIDGLCKNSYIVEAVELFRTLRIL-KCEL 388 (400)
Q Consensus 329 ~~----------~~~~~~~~a~~~~~~~~~~---~~~------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p 388 (400)
-+ -..|..++|..+++...-. .+. -....|..|.+--...|..+.|++.--.+.+. .+-|
T Consensus 976 ~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lp 1055 (1189)
T KOG2041|consen 976 NHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLP 1055 (1189)
T ss_pred HHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCC
Confidence 11 1245666666655543211 011 12233445555556678888888765555422 2445
Q ss_pred hhHHHHHH
Q 040367 389 DIRAYNCL 396 (400)
Q Consensus 389 ~~~~~~~l 396 (400)
..+.|..|
T Consensus 1056 P~eiySll 1063 (1189)
T KOG2041|consen 1056 PAEIYSLL 1063 (1189)
T ss_pred HHHHHHHH
Confidence 55555443
No 220
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.04 E-value=0.027 Score=48.36 Aligned_cols=65 Identities=15% Similarity=0.039 Sum_probs=50.6
Q ss_pred CChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCC-H---HHHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 040367 15 PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPD-L---YTYNILINCFCKMGRVSHGFVVLGRILRS 81 (400)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 81 (400)
.+...|+.+..+|.+.|++++|+..|++..+.. |+ . .+|..+..+|...|+.++|++.+++.++.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 466678888888888888888888888887764 44 2 35788888888888888888888888765
No 221
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.03 E-value=0.014 Score=41.09 Aligned_cols=86 Identities=12% Similarity=0.063 Sum_probs=61.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---------------CCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHH
Q 040367 284 TVFSYSILINGYCKNKEIEGALSLYGEMLSK---------------GIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQR 348 (400)
Q Consensus 284 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 348 (400)
|..++..++.++++.|+.+....+++..-.- ...|+..+..+++.+|+..|++..|.++++...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4567888888999999998888888765321 2346667777777888888888888888877665
Q ss_pred c-CCCCCHHHHHHHHHHHHhcC
Q 040367 349 D-GVAADTWTYRTFIDGLCKNS 369 (400)
Q Consensus 349 ~-~~~~~~~~~~~l~~~~~~~g 369 (400)
. +++.+..+|..|+.-+...-
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHHhc
Confidence 4 56666777777777555443
No 222
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.00 E-value=0.19 Score=43.09 Aligned_cols=335 Identities=14% Similarity=0.147 Sum_probs=182.1
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 040367 37 LSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKLRVF 116 (400)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 116 (400)
+++=+++.+. |.|..+|-.|++-+...+..++..++++++..- .+--..+|..-+++-...+++..++.+|.+....
T Consensus 29 lrLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k 105 (660)
T COG5107 29 LRLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK 105 (660)
T ss_pred HHHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh
Confidence 3444444443 568889999999999999999999999999753 2334567888887777788999999999988876
Q ss_pred CCCCCHHHHHHHHHHHHhcCCh------HHHHHHHHHHHcC-----------------------CCCCCcccchHHHHHH
Q 040367 117 GCEPNVFTYNTLINGLYRTGHT------IVALNLFEEMASG-----------------------NGEFGVEGFVDKAKEL 167 (400)
Q Consensus 117 ~~~~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~-----------------------~~~~~~~~~~~~a~~~ 167 (400)
..+...|...+.---+.+.. ....+.|+-.... ...+..+.+++...+.
T Consensus 106 --~l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~ 183 (660)
T COG5107 106 --SLNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNG 183 (660)
T ss_pred --hccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 34566666655544443311 1112223322221 1111224556666666
Q ss_pred HHHHHhCCCCCChHhHH------HHHHHHH-------hcCCHHHHHHHHHHHHh--CCCC----CCHH------------
Q 040367 168 FLQMKDENINPDVVTYT------SVIRGFC-------YANDWNEAKCLLIEMMD--QGVQ----PNVV------------ 216 (400)
Q Consensus 168 ~~~~~~~~~~~~~~~~~------~l~~~~~-------~~~~~~~a~~~~~~~~~--~~~~----~~~~------------ 216 (400)
+.++....+..=...|+ .-+.-.. ..--+-.|...+++... .|.. .+..
T Consensus 184 Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~ 263 (660)
T COG5107 184 YMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSN 263 (660)
T ss_pred HHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccch
Confidence 66666532111111111 1111000 00112334444444321 1110 0001
Q ss_pred --------------------------HHHHHHH--------------HHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHH
Q 040367 217 --------------------------TFNVIMD--------------ELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTL 256 (400)
Q Consensus 217 --------------------------~~~~l~~--------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 256 (400)
.++..+. .+...++-+.|++...+. .+-.+...-.+
T Consensus 264 WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg----~~~spsL~~~l 339 (660)
T COG5107 264 WLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERG----IEMSPSLTMFL 339 (660)
T ss_pred hhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhc----ccCCCchheeH
Confidence 1111111 112233344444443332 22222111112
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh--------------cCC---------------CCChhhHHHHHHHHHhcCCHHHHHHH
Q 040367 257 MDGFCLTGRVNRAKELFVSMES--------------MGC---------------THTVFSYSILINGYCKNKEIEGALSL 307 (400)
Q Consensus 257 ~~~~~~~~~~~~a~~~~~~~~~--------------~~~---------------~~~~~~~~~l~~~~~~~~~~~~a~~~ 307 (400)
...|.-.++.+.....|+...+ .+. ..-..+|..++.+-.+..-++.|..+
T Consensus 340 se~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~ 419 (660)
T COG5107 340 SEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKL 419 (660)
T ss_pred HHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHH
Confidence 2233333333333332322200 010 11223466677777778889999999
Q ss_pred HHHHHhCC-CCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 040367 308 YGEMLSKG-IKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTLR 382 (400)
Q Consensus 308 ~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 382 (400)
|-++.+.+ +.++...+++++..++ .|++.-|..+|+--... ++.+...-...+..+.+-++-..|..+|++..
T Consensus 420 F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-f~d~~~y~~kyl~fLi~inde~naraLFetsv 493 (660)
T COG5107 420 FIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-FPDSTLYKEKYLLFLIRINDEENARALFETSV 493 (660)
T ss_pred HHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhH
Confidence 99999988 5677888888888775 68889999999987665 33333334556667778888888888888554
No 223
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.88 E-value=0.24 Score=42.49 Aligned_cols=121 Identities=19% Similarity=0.200 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHH----HHHHh---cCCHHHHHHHHHHHHhCCCCCchh----hHHHHHH--HHHh
Q 040367 266 VNRAKELFVSMESMGCTHTVFSYSILI----NGYCK---NKEIEGALSLYGEMLSKGIKPDVV----IYNTLFV--VLFE 332 (400)
Q Consensus 266 ~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~--~~~~ 332 (400)
-++|..+++.+.+-. +-|...-+.+. .+|.+ ...+.+-+.+-.-+.+.|+.|-.. .-|.+.. .+..
T Consensus 396 dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLys 474 (549)
T PF07079_consen 396 DEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYS 474 (549)
T ss_pred cHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHh
Confidence 566777777666543 22333222222 22222 123333334434444556655332 3333432 3456
Q ss_pred hCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcccchhHHHH
Q 040367 333 IHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTLRILKCELDIRAYN 394 (400)
Q Consensus 333 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 394 (400)
.|++.++.-.-..+.+ +.|++.+|..+.-+.....++++|..++..+. |+..+++
T Consensus 475 qgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP-----~n~~~~d 529 (549)
T PF07079_consen 475 QGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP-----PNERMRD 529 (549)
T ss_pred cccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC-----CchhhHH
Confidence 7888888777666665 68899999999999999999999999988764 5555544
No 224
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.12 Score=41.61 Aligned_cols=130 Identities=16% Similarity=0.130 Sum_probs=90.3
Q ss_pred HHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCH
Q 040367 24 FGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRI 103 (400)
Q Consensus 24 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 103 (400)
.......|++.+|..+|....... +-+...-..+..+|...|+.+.|..++..+....-.........-|..+.+....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 335677899999999999988774 3356677888899999999999999999887653222222222344555555555
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCC
Q 040367 104 MEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFG 156 (400)
Q Consensus 104 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 156 (400)
.+..++-.+.-.. +-|...-..+...+...|+.+.|++.+-.+...+....
T Consensus 220 ~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~ 270 (304)
T COG3118 220 PEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE 270 (304)
T ss_pred CCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 5555555555443 44777778888899999998888887777766554433
No 225
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.85 E-value=0.25 Score=44.39 Aligned_cols=209 Identities=13% Similarity=0.173 Sum_probs=105.7
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHH-----HHHHHHHhcCCHHHHHHHHHHH
Q 040367 39 LFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFT-----SLIKGLCAESRIMEAAALFTKL 113 (400)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~ 113 (400)
-++++.++|-.|+... +...++-.|++.+|-++|.+--..+ .-.+.|+ ...+-+...|..++-..+.++-
T Consensus 622 EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~en--RAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKR 696 (1081)
T KOG1538|consen 622 ELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHEN--RALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKR 696 (1081)
T ss_pred HHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCchh--hHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 3445666676676543 3445566777777777765432110 0001111 1122233334333333333222
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhc
Q 040367 114 RVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYA 193 (400)
Q Consensus 114 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 193 (400)
-+. ..+..-=......+...|+.++|..+.-. .|=.+.+.++-+++.. .+..+...+...+.+.
T Consensus 697 A~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~~d----------~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l 760 (1081)
T KOG1538|consen 697 ADW--ARNIKEPKAAAEMLISAGEHVKAIEICGD----------HGWVDMLIDIARKLDK----AEREPLLLCATYLKKL 760 (1081)
T ss_pred HHH--hhhcCCcHHHHHHhhcccchhhhhhhhhc----------ccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhc
Confidence 111 00111112234455566776666655322 1222333333333322 2445555566666667
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH-----------hHHHHHHHHHh
Q 040367 194 NDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAF-----------VYNTLMDGFCL 262 (400)
Q Consensus 194 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----------~~~~l~~~~~~ 262 (400)
..+.-|-++|.+|-+. ..++......+++++|..+-++.-+. .|+.. -|...-.+|.+
T Consensus 761 ~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhk 829 (1081)
T KOG1538|consen 761 DSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHK 829 (1081)
T ss_pred cccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHH
Confidence 7777888888777542 34566777788888888777665442 22221 12334456777
Q ss_pred cCCHHHHHHHHHHHHhc
Q 040367 263 TGRVNRAKELFVSMESM 279 (400)
Q Consensus 263 ~~~~~~a~~~~~~~~~~ 279 (400)
.|+-.+|..+++++...
T Consensus 830 AGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 830 AGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hcchHHHHHHHHHhhhh
Confidence 78888888888777543
No 226
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.81 E-value=0.23 Score=44.43 Aligned_cols=162 Identities=16% Similarity=0.092 Sum_probs=107.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH------hHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCChhh
Q 040367 218 FNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAF------VYNTLMDGFCL----TGRVNRAKELFVSMESMGCTHTVFS 287 (400)
Q Consensus 218 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 287 (400)
+..++...+-.|+-+.+++.+.+..+.+---.+. .|...+..++. ..+.+.|.+++..+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 4566777777899999999998877643211221 22333333322 45678899999999876 566665
Q ss_pred HHHH-HHHHHhcCCHHHHHHHHHHHHhCCC---CCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 040367 288 YSIL-INGYCKNKEIEGALSLYGEMLSKGI---KPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFID 363 (400)
Q Consensus 288 ~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 363 (400)
|... .+.+...|++++|++.+++...... ......+--++.++.-.+++++|.+.|..+.+.. .-+..+|..+..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence 5433 4566778999999999997664211 1123344556777888999999999999998862 223445554444
Q ss_pred H-HHhcCcH-------HHHHHHHHHHH
Q 040367 364 G-LCKNSYI-------VEAVELFRTLR 382 (400)
Q Consensus 364 ~-~~~~g~~-------~~a~~~~~~~~ 382 (400)
+ +...|+. ++|.++|++..
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 3 3456777 88888888875
No 227
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.042 Score=46.13 Aligned_cols=92 Identities=10% Similarity=0.012 Sum_probs=50.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC-----CCCC---------CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHh
Q 040367 187 IRGFCYANDWNEAKCLLIEMMDQ-----GVQP---------NVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFV 252 (400)
Q Consensus 187 ~~~~~~~~~~~~a~~~~~~~~~~-----~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 252 (400)
.+.+.+.|++..|...|++.... +.++ -..++..+.-++.+.+++..|+..-++.+..+ ++|...
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhH
Confidence 34677888888888888876542 1111 11234444445555555555555555555543 234444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 040367 253 YNTLMDGFCLTGRVNRAKELFVSMESM 279 (400)
Q Consensus 253 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 279 (400)
...-..++...|+++.|+..|+.+.+.
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 444455555555555555555555554
No 228
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.76 E-value=0.042 Score=47.31 Aligned_cols=64 Identities=17% Similarity=0.003 Sum_probs=37.9
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-h---hhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 040367 249 NAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHT-V---FSYSILINGYCKNKEIEGALSLYGEMLSK 314 (400)
Q Consensus 249 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 314 (400)
+...++.+..+|.+.|++++|...|++..+.+ |+ . ..|..+..+|...|+.++|++.++++++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34555666666666666666666666666553 32 2 23566666666666666666666666653
No 229
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.71 E-value=0.097 Score=37.40 Aligned_cols=82 Identities=13% Similarity=0.112 Sum_probs=58.5
Q ss_pred hhHHHHHHHHhccCChhHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHH
Q 040367 18 CSFNILFGCLAKNKHYDTVLSLFKRLNSTGL--FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIK 95 (400)
Q Consensus 18 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 95 (400)
..+..-.....+.|++++|.+.|+.+..+-. +-...+.-.++.++.+.++++.|...+++.++..+.-...-|...+.
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~ 90 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR 90 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence 3444455667788999999999999987621 22455677888999999999999999999998754333344555555
Q ss_pred HHHh
Q 040367 96 GLCA 99 (400)
Q Consensus 96 ~~~~ 99 (400)
+++.
T Consensus 91 gL~~ 94 (142)
T PF13512_consen 91 GLSY 94 (142)
T ss_pred HHHH
Confidence 4443
No 230
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.71 E-value=0.3 Score=41.12 Aligned_cols=292 Identities=14% Similarity=0.094 Sum_probs=171.0
Q ss_pred HHHHHHHHh--ccCChhHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHhcCChhhHHHHHHHHHhcCCCCChhh--HHHH
Q 040367 20 FNILFGCLA--KNKHYDTVLSLFKRLNSTGLFPDLYTYNILIN--CFCKMGRVSHGFVVLGRILRSCFTPNAVT--FTSL 93 (400)
Q Consensus 20 ~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l 93 (400)
|..|-.++. -.|+-..|.++-.+.... +..|..-...++. +-.-.|+++.|.+-|+.|... |.... ...|
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgL 160 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGL 160 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHH
Confidence 444443333 346666676666655432 2334444444443 344568888888888888752 22221 1122
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHh
Q 040367 94 IKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKD 173 (400)
Q Consensus 94 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 173 (400)
.-.--+.|..+.|.++-+..-..- +.-...+...+...+..|+++.|+++++.-... .+
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~--------------~v------ 219 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAA--------------KV------ 219 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHH--------------Hh------
Confidence 222335677777777777665542 334667788888888888888777776654321 11
Q ss_pred CCCCCCh--HhHHHHHHHH---HhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 040367 174 ENINPDV--VTYTSVIRGF---CYANDWNEAKCLLIEMMDQGVQPNVVT-FNVIMDELCKNGKMDEASRLLDLMIQIGVR 247 (400)
Q Consensus 174 ~~~~~~~--~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 247 (400)
+.++. ..-..|+.+- .-..+...|...-.+..+. .||..- -.....++.+.|+..++-.+++.+.+....
T Consensus 220 --ie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH 295 (531)
T COG3898 220 --IEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH 295 (531)
T ss_pred --hchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC
Confidence 11111 1111222211 1223456666666555553 455432 233456788999999999999999987444
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHH---HhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHH
Q 040367 248 PNAFVYNTLMDGFCLTGRVNRAKELFVSM---ESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYN 324 (400)
Q Consensus 248 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 324 (400)
|+ +. .+..+.+.|+. +..-+++. .... +.+..+.-.+..+-...|++..|..--+...+. .|....|.
T Consensus 296 P~--ia--~lY~~ar~gdt--a~dRlkRa~~L~slk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~l 366 (531)
T COG3898 296 PD--IA--LLYVRARSGDT--ALDRLKRAKKLESLK-PNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYL 366 (531)
T ss_pred hH--HH--HHHHHhcCCCc--HHHHHHHHHHHHhcC-ccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHH
Confidence 43 33 22334455553 33333333 2222 445666677778888889998888777766654 56777777
Q ss_pred HHHHHHH-hhCcHHHHHHHHHHHHHc
Q 040367 325 TLFVVLF-EIHQVERAFKLFDEMQRD 349 (400)
Q Consensus 325 ~l~~~~~-~~~~~~~a~~~~~~~~~~ 349 (400)
.|...-. ..|+-.++..++-+..+.
T Consensus 367 LlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 367 LLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHhhccCchHHHHHHHHHHhcC
Confidence 7766543 459999999999888875
No 231
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.71 E-value=0.2 Score=39.17 Aligned_cols=207 Identities=14% Similarity=0.088 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 040367 52 LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLING 131 (400)
Q Consensus 52 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 131 (400)
...|.....+|-..+++++|...+.+..+. ...+...|++ ...++.|.-+.+++.+. +.-+..|+.....
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~kl--sEvvdl~eKAs~l 100 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSKL--SEVVDLYEKASEL 100 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHH
Confidence 345666667777888888888877777642 2323333221 22335555555555543 2234455666667
Q ss_pred HHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhC---C--CCCChHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 040367 132 LYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDE---N--INPDVVTYTSVIRGFCYANDWNEAKCLLIEM 206 (400)
Q Consensus 132 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 206 (400)
|..+|.++.|-..+++.-..-. ..++++|+++|++...- + .+--...+..+.+.+.+...+.+|-..+.+-
T Consensus 101 Y~E~GspdtAAmaleKAak~le----nv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe 176 (308)
T KOG1585|consen 101 YVECGSPDTAAMALEKAAKALE----NVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKE 176 (308)
T ss_pred HHHhCCcchHHHHHHHHHHHhh----cCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHh
Confidence 7777777777666665432211 11245555555554321 1 0111223444455566666666655554433
Q ss_pred HhC----CCCCCH-HHHHHHHHHHHhCCChHHHHHHHHHHHHcCC---CCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 040367 207 MDQ----GVQPNV-VTFNVIMDELCKNGKMDEASRLLDLMIQIGV---RPNAFVYNTLMDGFCLTGRVNRAKELF 273 (400)
Q Consensus 207 ~~~----~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~ 273 (400)
... .--++. ..|...|-.+....++..|...++...+.+- ..+..+...|+.+| ..||.+++..++
T Consensus 177 ~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 177 GVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred hhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 211 001111 2233344445555566666666666444321 12344555566555 455655555443
No 232
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.69 E-value=0.08 Score=43.35 Aligned_cols=151 Identities=17% Similarity=0.151 Sum_probs=94.5
Q ss_pred ccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhCCChHHH
Q 040367 158 EGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQ---GVQPNVVTFNVIMDELCKNGKMDEA 234 (400)
Q Consensus 158 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a 234 (400)
.|...+|-..++++.+. .|.|..++...=.+|.-.|+.+.....+++.... ++|-....-.++.-++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 56677777777777765 3667777777777888888877777777777643 2222223333444455667888888
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 040367 235 SRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTH---TVFSYSILINGYCKNKEIEGALSLYGE 310 (400)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~ 310 (400)
++.-++..+.+ +.|...-.+....+...|++.++.+++.+-...=... -...|-...-.+...+.++.|+++|+.
T Consensus 195 Ek~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 195 EKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 88888877764 3355566667777777788888877766544311000 011122333345566788888888864
No 233
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.07 Score=44.89 Aligned_cols=92 Identities=13% Similarity=0.023 Sum_probs=57.2
Q ss_pred HHHHHhCCChHHHHHHHHHHHHc-----CCCC---------CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhh
Q 040367 222 MDELCKNGKMDEASRLLDLMIQI-----GVRP---------NAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFS 287 (400)
Q Consensus 222 ~~~~~~~~~~~~a~~~~~~~~~~-----~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 287 (400)
.+.+.+.|++..|..-|+++... +..+ -..++..+..++.+.+++..|+..-......+ ++|...
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhH
Confidence 35678889999998888886653 1111 12234445556666666666666666666655 555555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 040367 288 YSILINGYCKNKEIEGALSLYGEMLSK 314 (400)
Q Consensus 288 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 314 (400)
.-.=.+++...|+++.|...|+++++.
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 555566666666666666666666664
No 234
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.65 E-value=0.33 Score=40.85 Aligned_cols=296 Identities=12% Similarity=0.060 Sum_probs=181.0
Q ss_pred HHHHHHHHH--hcCChhhHHHHHHHHHhcCCCCChhhHHHHHH--HHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHH
Q 040367 55 YNILINCFC--KMGRVSHGFVVLGRILRSCFTPNAVTFTSLIK--GLCAESRIMEAAALFTKLRVFGCEPNVF--TYNTL 128 (400)
Q Consensus 55 ~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l 128 (400)
|..|-.+++ -.|+-..|.++-.+..+. +..|......++. +-.-.|+++.|.+-|+.|... |... -...|
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgL 160 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGL 160 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHH
Confidence 445544444 356777777776665432 2334444444443 334578999999999998852 2222 12233
Q ss_pred HHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040367 129 INGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMD 208 (400)
Q Consensus 129 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 208 (400)
.-..-+.|..+.|.++-+.. -... +.-...+.+.+...+..|+|+.|+++++.-..
T Consensus 161 yleAqr~GareaAr~yAe~A-----------------------a~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 161 YLEAQRLGAREAARHYAERA-----------------------AEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRA 216 (531)
T ss_pred HHHHHhcccHHHHHHHHHHH-----------------------Hhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 33344566655555544433 2221 22356788899999999999999999998765
Q ss_pred CC-CCCCHH--HHHHHHHHHH---hCCChHHHHHHHHHHHHcCCCCCHHh-HHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 040367 209 QG-VQPNVV--TFNVIMDELC---KNGKMDEASRLLDLMIQIGVRPNAFV-YNTLMDGFCLTGRVNRAKELFVSMESMGC 281 (400)
Q Consensus 209 ~~-~~~~~~--~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 281 (400)
.. +.++.. .-..++.+-. -..+...|...-.+..+. .|+... -..-..++.+.|+..++-.+++.+-+..
T Consensus 217 ~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e- 293 (531)
T COG3898 217 AKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAE- 293 (531)
T ss_pred HHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC-
Confidence 43 233332 2222333221 123566666666666553 444322 2234567889999999999999998874
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCC-chhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHH
Q 040367 282 THTVFSYSILINGYCKNKEIEGALSLYGEMLSK-GIKP-DVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYR 359 (400)
Q Consensus 282 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 359 (400)
|.+..+... .+.+.|+ .+..-+++..+. ..+| +..+...+..+-...|++..|..--+...+ ..|....|.
T Consensus 294 -PHP~ia~lY--~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~l 366 (531)
T COG3898 294 -PHPDIALLY--VRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYL 366 (531)
T ss_pred -CChHHHHHH--HHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHH
Confidence 555444322 2344554 333333333321 1233 556667777888899999999888777766 478888888
Q ss_pred HHHHHHHhc-CcHHHHHHHHHHHHHhcccc
Q 040367 360 TFIDGLCKN-SYIVEAVELFRTLRILKCEL 388 (400)
Q Consensus 360 ~l~~~~~~~-g~~~~a~~~~~~~~~~~~~p 388 (400)
.|.+.-... |+-.++..++-+..+.--.|
T Consensus 367 LlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 367 LLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred HHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 888766554 99999999988887643333
No 235
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.63 E-value=0.16 Score=36.91 Aligned_cols=125 Identities=15% Similarity=0.166 Sum_probs=72.1
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 040367 219 NVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKN 298 (400)
Q Consensus 219 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 298 (400)
..++..+...+.......+++.+...+. .+....+.++..|++.+ ..+....+.. ..+......+++.|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 4566666667777777777777777653 56667777777777653 3344444432 12333445566777777
Q ss_pred CCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhh-CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 040367 299 KEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEI-HQVERAFKLFDEMQRDGVAADTWTYRTFIDGLC 366 (400)
Q Consensus 299 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 366 (400)
+-++++..++.++-. . ...+..+... ++++.|.+++.+- .+...|..++..+.
T Consensus 83 ~l~~~~~~l~~k~~~-----~----~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 83 KLYEEAVELYKKDGN-----F----KDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred CcHHHHHHHHHhhcC-----H----HHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 777777777665532 1 1222223333 6667776665541 25556666665554
No 236
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.57 E-value=0.14 Score=45.07 Aligned_cols=159 Identities=14% Similarity=0.065 Sum_probs=92.2
Q ss_pred HHHHhcCCHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCH
Q 040367 188 RGFCYANDWNEAKCLLIEMM-DQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRV 266 (400)
Q Consensus 188 ~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 266 (400)
....-.++++++.+....-. -..++ ....+.++.-+.+.|..+.|+++...-. .-.....+.|++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L 334 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNL 334 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-H
T ss_pred HHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCH
Confidence 34456777888766665211 11122 4446777777778888888887754321 123344577888
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHH
Q 040367 267 NRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEM 346 (400)
Q Consensus 267 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 346 (400)
+.|.++.+++ .+...|..|.....+.|+++-|.+.+++..+ +..|+-.|.-.|+.+.-.++.+..
T Consensus 335 ~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 335 DIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp HHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHH
Confidence 8877765433 3566788888888888888888888776643 455666667778877777777766
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 040367 347 QRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTL 381 (400)
Q Consensus 347 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 381 (400)
...|- ++....++.-.|+.++..+++.+-
T Consensus 400 ~~~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 400 EERGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 66542 344455566667777776665443
No 237
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.47 E-value=0.56 Score=42.02 Aligned_cols=162 Identities=17% Similarity=0.156 Sum_probs=109.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCCHHh
Q 040367 183 YTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNV------VTFNVIMDELCK----NGKMDEASRLLDLMIQIGVRPNAFV 252 (400)
Q Consensus 183 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 252 (400)
+..+++...-.||-+.+++.+.+..+.+---.+ -.|..++..+.. ....+.|.+++..+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 455666677789999999999987764311122 234444444433 45678899999999886 455555
Q ss_pred HH-HHHHHHHhcCCHHHHHHHHHHHHhcC--C-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHH-
Q 040367 253 YN-TLMDGFCLTGRVNRAKELFVSMESMG--C-THTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLF- 327 (400)
Q Consensus 253 ~~-~l~~~~~~~~~~~~a~~~~~~~~~~~--~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~- 327 (400)
|. .-.+.+...|++++|.+.|+...... . ......+--+...+.-.++|++|.+.|..+.+.. ..+..+|.-+.
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence 43 34456778899999999999765321 1 1123344556677888999999999999999864 33555555444
Q ss_pred HHHHhhCcH-------HHHHHHHHHHH
Q 040367 328 VVLFEIHQV-------ERAFKLFDEMQ 347 (400)
Q Consensus 328 ~~~~~~~~~-------~~a~~~~~~~~ 347 (400)
.++...|+. ++|.++|.+..
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 344567777 88888888765
No 238
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=96.43 E-value=0.43 Score=39.58 Aligned_cols=139 Identities=12% Similarity=0.180 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--CC----ChHHHHHHHHHHHHcCCC---CCHHhHHHHHHHHHhcCC-
Q 040367 196 WNEAKCLLIEMMDQGVQPNVVTFNVIMDELCK--NG----KMDEASRLLDLMIQIGVR---PNAFVYNTLMDGFCLTGR- 265 (400)
Q Consensus 196 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~- 265 (400)
+++.+.+++.+.+.|+.-+..+|-+....... .. ....+..+++.|.+...- ++..++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45667788889999888887777664443333 22 355788999999987432 234445445433 3333
Q ss_pred ---HHHHHHHHHHHHhcCCCCCh--hhHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcH
Q 040367 266 ---VNRAKELFVSMESMGCTHTV--FSYSILINGYCKNKE--IEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQV 336 (400)
Q Consensus 266 ---~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 336 (400)
.+.++.+|+.+.+.|...+- ...+.++..+..... ..++.++++.+.+.|+++....|..++-...-.+..
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~ 233 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPE 233 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCch
Confidence 46677888888887755433 333334433322222 457888999999999998888887776544433333
No 239
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.43 E-value=0.12 Score=35.90 Aligned_cols=91 Identities=14% Similarity=0.087 Sum_probs=54.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchh---hHHHHHHHHHhhCc
Q 040367 259 GFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVV---IYNTLFVVLFEIHQ 335 (400)
Q Consensus 259 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~ 335 (400)
+....|+.+.|++.|.+....- +.....||.-.+++.-.|+.++|++-+.+..+..-.-+.. .|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4556677777777777766553 4466667777777777777777777776666541111221 22223344555666
Q ss_pred HHHHHHHHHHHHHcC
Q 040367 336 VERAFKLFDEMQRDG 350 (400)
Q Consensus 336 ~~~a~~~~~~~~~~~ 350 (400)
-+.|..=|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 777777676666654
No 240
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.41 E-value=0.32 Score=42.91 Aligned_cols=157 Identities=11% Similarity=0.082 Sum_probs=81.0
Q ss_pred HHHhccCChhHHHHHHH--HHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 040367 25 GCLAKNKHYDTVLSLFK--RLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESR 102 (400)
Q Consensus 25 ~~~~~~~~~~~a~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 102 (400)
....-+++++.+.++.+ .+.. .++ ....+.++..+.+.|.++.|+++.+.-. .-.....+.|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NIP--KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cCC--hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCC
Confidence 34445667777666654 1111 111 3446666666777777777766543321 12334456677
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCCChHh
Q 040367 103 IMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENINPDVVT 182 (400)
Q Consensus 103 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 182 (400)
++.|.++.++ ..+...|..|.....+.|+++-|.+.|++. .-
T Consensus 334 L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~--------------------------------~d 375 (443)
T PF04053_consen 334 LDIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKA--------------------------------KD 375 (443)
T ss_dssp HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHC--------------------------------T-
T ss_pred HHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhh--------------------------------cC
Confidence 7777766543 235667777777777777766555555442 12
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHH
Q 040367 183 YTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDL 240 (400)
Q Consensus 183 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 240 (400)
+..|+-.|.-.|+.+...++.+.....|. ++....++.-.|+.++..+++.+
T Consensus 376 ~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 376 FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44555566666776666666666655541 34444455556666666666554
No 241
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.38 E-value=1.1 Score=43.64 Aligned_cols=81 Identities=17% Similarity=0.145 Sum_probs=39.0
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHH
Q 040367 223 DELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIE 302 (400)
Q Consensus 223 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 302 (400)
..+.....+++|.-.|+..-+. ...+.+|..+|+|++|..+..++.... ..-..+-..|+.-+...+++-
T Consensus 947 ~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~~-de~~~~a~~L~s~L~e~~kh~ 1016 (1265)
T KOG1920|consen 947 DHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEGK-DELVILAEELVSRLVEQRKHY 1016 (1265)
T ss_pred HHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCCH-HHHHHHHHHHHHHHHHcccch
Confidence 3334455555555555543221 123455666666666666665554211 000111134555555566666
Q ss_pred HHHHHHHHHHh
Q 040367 303 GALSLYGEMLS 313 (400)
Q Consensus 303 ~a~~~~~~~~~ 313 (400)
+|-++..+...
T Consensus 1017 eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1017 EAAKILLEYLS 1027 (1265)
T ss_pred hHHHHHHHHhc
Confidence 66655555443
No 242
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.37 E-value=0.2 Score=35.06 Aligned_cols=62 Identities=11% Similarity=0.145 Sum_probs=27.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCC
Q 040367 289 SILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGV 351 (400)
Q Consensus 289 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 351 (400)
...+......|+-+.-.+++.++.+. -.+++...-.+..+|.+.|+..++.+++.++-+.|+
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 34444445555555555555554432 233444444555555555555555555555555443
No 243
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.30 E-value=0.11 Score=41.43 Aligned_cols=97 Identities=15% Similarity=0.127 Sum_probs=61.8
Q ss_pred hHHHHHHHHhccCChhHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCC-C-ChhhHHHHH
Q 040367 19 SFNILFGCLAKNKHYDTVLSLFKRLNSTGL--FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFT-P-NAVTFTSLI 94 (400)
Q Consensus 19 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~ 94 (400)
.|+.-+. +.+.|++..|.+.|....+... .-...++-.|..++...|+++.|..+|..+.+...+ | -+..+-.|.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 3555444 3456667777777777776531 112345666777777777777777777777765221 1 234555666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 040367 95 KGLCAESRIMEAAALFTKLRVF 116 (400)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~ 116 (400)
.+..+.|+.++|...|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 6677777777777777777765
No 244
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.29 E-value=0.14 Score=40.83 Aligned_cols=97 Identities=10% Similarity=0.116 Sum_probs=54.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC--CCHHhHHHHH
Q 040367 182 TYTSVIRGFCYANDWNEAKCLLIEMMDQGV--QPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVR--PNAFVYNTLM 257 (400)
Q Consensus 182 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~ 257 (400)
.|+.-+. +.+.|++..|...|...++... .-....+..|..++...|+++.|..+|..+.+.-.. .-+..+-.|.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 3554443 3455667777777776665421 112334555666666667777766666666654111 1234455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc
Q 040367 258 DGFCLTGRVNRAKELFVSMESM 279 (400)
Q Consensus 258 ~~~~~~~~~~~a~~~~~~~~~~ 279 (400)
.+..+.|+.++|..+|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 5666666666666666666654
No 245
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.22 E-value=0.59 Score=39.02 Aligned_cols=201 Identities=12% Similarity=0.052 Sum_probs=116.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHH----HhCC-CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc-CCCC---CHHh
Q 040367 182 TYTSVIRGFCYANDWNEAKCLLIEM----MDQG-VQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQI-GVRP---NAFV 252 (400)
Q Consensus 182 ~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~ 252 (400)
++..+..+.++.|.+++++..--.- .+.. -..--..|..+..++.+..++.+++.+-..-... |..| ....
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~ 124 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQV 124 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchh
Confidence 4455556667777776665433221 1110 0011234555555666656666666665554443 2222 1233
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCch---
Q 040367 253 YNTLMDGFCLTGRVNRAKELFVSMESMGCT-----HTVFSYSILINGYCKNKEIEGALSLYGEMLSK----GIKPDV--- 320 (400)
Q Consensus 253 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~--- 320 (400)
..++..+....+.++++.+.|+...+.... ....++..|...|.+..++++|.-+..++.+. ++..-.
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 445667777778888888888877553211 12456788888888888888888777665542 222111
Q ss_pred --hhHHHHHHHHHhhCcHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 040367 321 --VIYNTLFVVLFEIHQVERAFKLFDEMQRD----GVAA-DTWTYRTFIDGLCKNSYIVEAVELFRTLR 382 (400)
Q Consensus 321 --~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 382 (400)
...-.+..++...|....|.+.-++..+. |-.+ -......+.+.|...|+.+.|..-|+...
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 12233445667778888888777776543 3222 13344566777888888888887777664
No 246
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.20 E-value=0.97 Score=41.57 Aligned_cols=180 Identities=14% Similarity=0.062 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHH----H-HHhCCChHHHHHHHHHHHH-------cCCCCCHHhHHHHHHHHHhc
Q 040367 196 WNEAKCLLIEMMDQGVQPNVVTFNVIMD----E-LCKNGKMDEASRLLDLMIQ-------IGVRPNAFVYNTLMDGFCLT 263 (400)
Q Consensus 196 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 263 (400)
...|.++++...+.| +......+.. + +....+.+.|..+++.+.+ .+ .+.....+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 456777787777765 2222222222 2 4456788888888888866 44 233455666676653
Q ss_pred C-----CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHH----hh
Q 040367 264 G-----RVNRAKELFVSMESMGCTHTVFSYSILINGYCK-NKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLF----EI 333 (400)
Q Consensus 264 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~ 333 (400)
. +.+.|..++......+ .|+....-..+..... ..+...|.++|..+.+.|.. ..+-.+..++. ..
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcC
Confidence 2 6677888888888877 4555433322222222 24677899999888887743 22222332222 33
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhccc
Q 040367 334 HQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTLRILKCE 387 (400)
Q Consensus 334 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 387 (400)
.+...|..++++.-+.| .|....-...+..+.. ++++.+.-.+..+.+.|.+
T Consensus 378 r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE 429 (552)
T ss_pred CCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh
Confidence 46788888888888876 3333333333344444 7777777777777666543
No 247
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.54 Score=38.13 Aligned_cols=143 Identities=17% Similarity=0.130 Sum_probs=77.3
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHH
Q 040367 224 ELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEG 303 (400)
Q Consensus 224 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 303 (400)
.....|++.+|...|+........ +......++.+|...|+.+.|..++..+....-.........-+..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 445567777777777776665322 3445556667777777777777777766543211111121222334444444444
Q ss_pred HHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCc
Q 040367 304 ALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRD--GVAADTWTYRTFIDGLCKNSY 370 (400)
Q Consensus 304 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~ 370 (400)
...+-++.-.. +-|...-..+...+...|+.+.|.+.+=.+.+. |.. |...-..++..+...|.
T Consensus 222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGP 287 (304)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCC
Confidence 44444444332 114445555666667777777777766655543 222 44445556666655553
No 248
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.17 E-value=0.6 Score=38.61 Aligned_cols=169 Identities=11% Similarity=0.064 Sum_probs=88.2
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHH-------HHHHHHHHHhcC-ChHHHHHHHHHHHcCCCCCCcccchHHHHHHHH
Q 040367 98 CAESRIMEAAALFTKLRVFGCEPNVFT-------YNTLINGLYRTG-HTIVALNLFEEMASGNGEFGVEGFVDKAKELFL 169 (400)
Q Consensus 98 ~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 169 (400)
.+.|+++.|..++.+........++.. +..+.......+ +++.|..++++ |.++++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~----------------a~~~l~ 67 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQR----------------AYDILE 67 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHH----------------HHHHHH
Confidence 456777888887777765421112222 222333344455 78888877544 444543
Q ss_pred HH-HhCCCCCC-----hHhHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHH
Q 040367 170 QM-KDENINPD-----VVTYTSVIRGFCYANDWN---EAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDL 240 (400)
Q Consensus 170 ~~-~~~~~~~~-----~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 240 (400)
.. ......|+ ..++..++.++...+..+ +|..+++.+... .+..+.++..-+..+.+.++.+.+.+++.+
T Consensus 68 ~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~ 146 (278)
T PF08631_consen 68 KPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMR 146 (278)
T ss_pred hhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHH
Confidence 31 11111233 245666777777776654 455555555433 222345555566666667888888888888
Q ss_pred HHHcCCCCCHHhHHHHHHHHHh--cCCHHHHHHHHHHHHhcCCCCC
Q 040367 241 MIQIGVRPNAFVYNTLMDGFCL--TGRVNRAKELFVSMESMGCTHT 284 (400)
Q Consensus 241 ~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~ 284 (400)
|...- ......+..++..+.. ......+...+..+....+.|.
T Consensus 147 mi~~~-~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 147 MIRSV-DHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred HHHhc-ccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCC
Confidence 87752 2133344444444321 1233445555555544333333
No 249
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.16 E-value=0.37 Score=44.74 Aligned_cols=46 Identities=17% Similarity=0.244 Sum_probs=19.5
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 040367 261 CLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSL 307 (400)
Q Consensus 261 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 307 (400)
....+..+-...++.+.+.|. .+...-..|+.+|.+.++.++-.++
T Consensus 408 Ldaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~ef 453 (933)
T KOG2114|consen 408 LDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEF 453 (933)
T ss_pred cCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHH
Confidence 333334444444444444442 2333334444444444444444433
No 250
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.15 E-value=0.49 Score=37.53 Aligned_cols=181 Identities=11% Similarity=-0.020 Sum_probs=97.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 040367 182 TYTSVIRGFCYANDWNEAKCLLIEMMDQG--VQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDG 259 (400)
Q Consensus 182 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 259 (400)
.+-.-+..-.+.|++++|.+.|+.+.... -+-...+...++.++.+.++++.|+...++...........-|..-+.+
T Consensus 36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylkg 115 (254)
T COG4105 36 ELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKG 115 (254)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHH
Confidence 33334445668899999999999988652 1223455666777888999999999999998886433333334444444
Q ss_pred HHhc-------CCHHHH---HHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHH
Q 040367 260 FCLT-------GRVNRA---KELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVV 329 (400)
Q Consensus 260 ~~~~-------~~~~~a---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 329 (400)
.+.- .|...+ ..-|++++.. -||.. -...|......+... =...=..+.+.
T Consensus 116 Ls~~~~i~~~~rDq~~~~~A~~~f~~~i~r--yPnS~-------------Ya~dA~~~i~~~~d~----LA~~Em~Iary 176 (254)
T COG4105 116 LSYFFQIDDVTRDQSAARAAFAAFKELVQR--YPNSR-------------YAPDAKARIVKLNDA----LAGHEMAIARY 176 (254)
T ss_pred HHHhccCCccccCHHHHHHHHHHHHHHHHH--CCCCc-------------chhhHHHHHHHHHHH----HHHHHHHHHHH
Confidence 3321 233333 3333333332 22221 111121111111110 00000234566
Q ss_pred HHhhCcHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 040367 330 LFEIHQVERAFKLFDEMQRDGVAAD---TWTYRTFIDGLCKNSYIVEAVELFRTLR 382 (400)
Q Consensus 330 ~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 382 (400)
|.+.|.+-.|..-+++|++. .+-+ ...+-.+..+|.+.|-.++|.+.-+-+.
T Consensus 177 Y~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 177 YLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 67777777777777777765 2222 2334455666777777777666544443
No 251
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.14 E-value=0.17 Score=35.28 Aligned_cols=91 Identities=16% Similarity=0.035 Sum_probs=44.7
Q ss_pred HHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHH---HHHHHHHhcCC
Q 040367 26 CLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFT---SLIKGLCAESR 102 (400)
Q Consensus 26 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~ 102 (400)
++...|+.+.|++.|.+....- +.....|+.-.+++.-.|+.++|++=+++..+..-..+..... .-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4455556666666665555542 3345555555555555566666655555555442122222222 22223444555
Q ss_pred HHHHHHHHHHHHHcC
Q 040367 103 IMEAAALFTKLRVFG 117 (400)
Q Consensus 103 ~~~a~~~~~~~~~~~ 117 (400)
-+.|..-|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 555555555554443
No 252
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.12 E-value=0.33 Score=35.21 Aligned_cols=88 Identities=13% Similarity=0.067 Sum_probs=61.3
Q ss_pred hhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 040367 18 CSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGL 97 (400)
Q Consensus 18 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 97 (400)
.....++..+.+.+.+.....+++.+...+ ..+...++.++..|++.+ .+..++.++. ..+......+++.|
T Consensus 8 ~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c 79 (140)
T smart00299 8 IDVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLC 79 (140)
T ss_pred CCHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHH
Confidence 345678888888889999999999988876 467778899999988753 3344444442 12334445577777
Q ss_pred HhcCCHHHHHHHHHHH
Q 040367 98 CAESRIMEAAALFTKL 113 (400)
Q Consensus 98 ~~~~~~~~a~~~~~~~ 113 (400)
.+.+.++++.-++.++
T Consensus 80 ~~~~l~~~~~~l~~k~ 95 (140)
T smart00299 80 EKAKLYEEAVELYKKD 95 (140)
T ss_pred HHcCcHHHHHHHHHhh
Confidence 7777777777777665
No 253
>PRK11906 transcriptional regulator; Provisional
Probab=96.12 E-value=0.83 Score=39.79 Aligned_cols=145 Identities=13% Similarity=0.084 Sum_probs=90.5
Q ss_pred hHHHHHHHHHHHHc-CCCCC-HHhHHHHHHHHHh---------cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 040367 231 MDEASRLLDLMIQI-GVRPN-AFVYNTLMDGFCL---------TGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNK 299 (400)
Q Consensus 231 ~~~a~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 299 (400)
.+.|..+|.+.... ...|+ ...|..+..++.. ..+..+|.+.-+...+.+ +.|+.....+..+....+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 45677778887722 23343 3334333333221 234556677777777776 667777777777777778
Q ss_pred CHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCcHHHHHH
Q 040367 300 EIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAAD---TWTYRTFIDGLCKNSYIVEAVE 376 (400)
Q Consensus 300 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~ 376 (400)
+++.|...|++....++. ...+|......+.-.|+.++|.+.+++..+. .|. .......++.|+..+ .+.|++
T Consensus 353 ~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~~~-~~~~~~ 428 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVPNP-LKNNIK 428 (458)
T ss_pred chhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcCCc-hhhhHH
Confidence 888888888888876422 3455666666667788888888888887765 332 333344444565554 455666
Q ss_pred HHHH
Q 040367 377 LFRT 380 (400)
Q Consensus 377 ~~~~ 380 (400)
+|-+
T Consensus 429 ~~~~ 432 (458)
T PRK11906 429 LYYK 432 (458)
T ss_pred HHhh
Confidence 5543
No 254
>PRK11906 transcriptional regulator; Provisional
Probab=96.10 E-value=0.63 Score=40.51 Aligned_cols=132 Identities=9% Similarity=0.067 Sum_probs=90.2
Q ss_pred hhH--HHHHHHHhcc-----CChhHHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc---------CChhhHHHHHHHHH
Q 040367 18 CSF--NILFGCLAKN-----KHYDTVLSLFKRLNST-GLFPD-LYTYNILINCFCKM---------GRVSHGFVVLGRIL 79 (400)
Q Consensus 18 ~~~--~~l~~~~~~~-----~~~~~a~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~ 79 (400)
..| ...+.+.... ...+.|+.+|.+.... ...|+ ...|..+..++... .+..+|.++.++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 677 6666665552 2356788899999822 22444 45565555444322 23456777788888
Q ss_pred hcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcC
Q 040367 80 RSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASG 151 (400)
Q Consensus 80 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 151 (400)
+.+ +.|......+..+....++++.|...|++....+ +-...+|........-.|+.++|.+.+++..+.
T Consensus 332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 776 4577777777777788888999999999998875 445667777777777889977777776665443
No 255
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.03 E-value=0.0076 Score=31.09 Aligned_cols=32 Identities=13% Similarity=0.366 Sum_probs=23.0
Q ss_pred hHHHHhcCCCCCChhhHHHHHHHHhccCChhHHH
Q 040367 4 FDYMLNMRPSPPPVCSFNILFGCLAKNKHYDTVL 37 (400)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 37 (400)
|+..++..|. |+.+|+.+...+...|++++|+
T Consensus 2 y~kAie~~P~--n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN--NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC--CHHHHHHHHHHHHHCcCHHhhc
Confidence 5566666666 7777777777777777777765
No 256
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.02 E-value=0.35 Score=34.65 Aligned_cols=78 Identities=15% Similarity=0.073 Sum_probs=50.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 040367 183 YTSVIRGFCYANDWNEAKCLLIEMMDQG--VQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGF 260 (400)
Q Consensus 183 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 260 (400)
+..-.....+.|++++|++.|+.+...- -+-....-..++.+|.+.+++++|...+++.++.+......-|...+.++
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL 92 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGL 92 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 3344455667888888888888887652 12233455667778888888888888888888865433333444444443
No 257
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.98 E-value=1 Score=39.56 Aligned_cols=62 Identities=15% Similarity=0.180 Sum_probs=43.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CchhhHHHHHHHHHhhCcHHHHHHHHHHHHH
Q 040367 287 SYSILINGYCKNKEIEGALSLYGEMLSKGIK-PDVVIYNTLFVVLFEIHQVERAFKLFDEMQR 348 (400)
Q Consensus 287 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 348 (400)
.-..+..++.+.|+.++|.+.++++.+.... .+......|+.++...+.+.++..++.+-.+
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 3345666677788888888888888764322 2334566778888888888888888877644
No 258
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.98 E-value=0.61 Score=37.04 Aligned_cols=56 Identities=7% Similarity=-0.059 Sum_probs=38.0
Q ss_pred HHHhcCChhhHHHHHHHHHhcCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 040367 61 CFCKMGRVSHGFVVLGRILRSCF--TPNAVTFTSLIKGLCAESRIMEAAALFTKLRVF 116 (400)
Q Consensus 61 ~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 116 (400)
.-.+.|++++|...|+.+....+ +-...+...++.++.+.++++.|+...++....
T Consensus 43 ~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 43 TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 34567888888888888876521 112334555666777888888888888887765
No 259
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.97 E-value=0.039 Score=30.49 Aligned_cols=27 Identities=15% Similarity=0.164 Sum_probs=14.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 040367 90 FTSLIKGLCAESRIMEAAALFTKLRVF 116 (400)
Q Consensus 90 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 116 (400)
+..+...|...|++++|.++|+++.+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444555555555555555555555554
No 260
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.92 E-value=0.65 Score=36.95 Aligned_cols=202 Identities=16% Similarity=0.063 Sum_probs=140.4
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 040367 180 VVTYTSVIRGFCYANDWNEAKCLLIEMMDQ-GVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMD 258 (400)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 258 (400)
...+......+...+++..+...+...... ........+......+...+.+..+...+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 456677777888888999888888887752 234556667777777788888889999998888754332 122222333
Q ss_pred -HHHhcCCHHHHHHHHHHHHhcCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCc
Q 040367 259 -GFCLTGRVNRAKELFVSMESMGC--THTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQ 335 (400)
Q Consensus 259 -~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 335 (400)
.+...|+++.|...+........ ......+......+...++.+.+...+..............+..+...+...++
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 67889999999999998865321 123333444444466788999999999988876322135667777888888888
Q ss_pred HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Q 040367 336 VERAFKLFDEMQRDGVAAD-TWTYRTFIDGLCKNSYIVEAVELFRTLRIL 384 (400)
Q Consensus 336 ~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 384 (400)
++.+...+...... .|+ ...+..+...+...|..+++...+......
T Consensus 218 ~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 218 YEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999888875 333 444555555555677788888888887753
No 261
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.91 E-value=1.2 Score=39.90 Aligned_cols=88 Identities=8% Similarity=0.008 Sum_probs=41.3
Q ss_pred HhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCChhhHHHHHHHHHhc-CCC-CChhhHHHHHHHHHhcCCH
Q 040367 27 LAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFC-KMGRVSHGFVVLGRILRS-CFT-PNAVTFTSLIKGLCAESRI 103 (400)
Q Consensus 27 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~ 103 (400)
-.+-|..+.+..+|++.... ++.+...|.....-+. ..|+.+.....|+++... |.. .+...|...|..-..++++
T Consensus 89 E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~ 167 (577)
T KOG1258|consen 89 EYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSW 167 (577)
T ss_pred HHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccH
Confidence 34445555555555555442 3444444444433322 334444555555555443 111 1333455555544555555
Q ss_pred HHHHHHHHHHHH
Q 040367 104 MEAAALFTKLRV 115 (400)
Q Consensus 104 ~~a~~~~~~~~~ 115 (400)
.....+|+++++
T Consensus 168 k~v~~iyeRile 179 (577)
T KOG1258|consen 168 KRVANIYERILE 179 (577)
T ss_pred HHHHHHHHHHHh
Confidence 555555555553
No 262
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.90 E-value=0.36 Score=33.80 Aligned_cols=65 Identities=15% Similarity=0.087 Sum_probs=33.0
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 040367 181 VTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGV 246 (400)
Q Consensus 181 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 246 (400)
......+......|+-+.-.+++..+.+. -.+++.....+..+|.+.|+..++.+++.++-+.|.
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 34445555556666666666666655542 245555555566666666666666666666655553
No 263
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.89 E-value=0.87 Score=38.09 Aligned_cols=128 Identities=12% Similarity=0.084 Sum_probs=55.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc----CCCCCHHhHHH
Q 040367 185 SVIRGFCYANDWNEAKCLLIEMMDQG-----VQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQI----GVRPNAFVYNT 255 (400)
Q Consensus 185 ~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~ 255 (400)
++..++.-.+.++++++.|+...+.- .-....++..+-..|.+..++++|.-+..+..+. ++..-..-|..
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 34445555555666666665554311 0112234555555556666666655554444332 22211111211
Q ss_pred -----HHHHHHhcCCHHHHHHHHHHHHh----cCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040367 256 -----LMDGFCLTGRVNRAKELFVSMES----MGCT-HTVFSYSILINGYCKNKEIEGALSLYGEML 312 (400)
Q Consensus 256 -----l~~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 312 (400)
+.-++...|....|.+.-++..+ .|-. ........+.+.|...|+.+.|+.-|+++.
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 22334445555555555444432 1101 111222334455555555555555555444
No 264
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.86 E-value=0.04 Score=30.42 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=10.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh
Q 040367 289 SILINGYCKNKEIEGALSLYGEMLS 313 (400)
Q Consensus 289 ~~l~~~~~~~~~~~~a~~~~~~~~~ 313 (400)
..+...|...|++++|.++++++++
T Consensus 5 ~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 5 LALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3334444444444444444444444
No 265
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.86 E-value=0.84 Score=37.74 Aligned_cols=106 Identities=14% Similarity=0.124 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHH
Q 040367 123 FTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCL 202 (400)
Q Consensus 123 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 202 (400)
.++..++.++...+..+. .++|..+++.+.... +-.+..+..-+..+.+.++.+.+.+.
T Consensus 85 ~iL~~La~~~l~~~~~~~--------------------~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~ 143 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYES--------------------VEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEI 143 (278)
T ss_pred HHHHHHHHHHHcCCChHH--------------------HHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHH
Confidence 456677778877776543 455666666665542 22345565667778789999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHh--CCChHHHHHHHHHHHHcCCCCCH
Q 040367 203 LIEMMDQGVQPNVVTFNVIMDELCK--NGKMDEASRLLDLMIQIGVRPNA 250 (400)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~ 250 (400)
+..|+..- ......+..++..+.. ......+...+..+....+.|..
T Consensus 144 L~~mi~~~-~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 144 LMRMIRSV-DHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHhc-ccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 99999862 3233445555554422 12344566666666555444444
No 266
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.77 E-value=0.66 Score=35.78 Aligned_cols=63 Identities=16% Similarity=0.068 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040367 52 LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKLRV 115 (400)
Q Consensus 52 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 115 (400)
+..||.+.-.+...|+++.|.+.|+...+.++.-+-...|.-|. +.-.|++.-|.+-+...-+
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ 161 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQ 161 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHHHh
Confidence 44555555555566666666666666655533222222222222 2234555555554444433
No 267
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.63 E-value=0.18 Score=40.33 Aligned_cols=89 Identities=17% Similarity=0.185 Sum_probs=71.0
Q ss_pred CChHhHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC----------------ChHHHHH
Q 040367 178 PDVVTYTSVIRGFCY-----ANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNG----------------KMDEASR 236 (400)
Q Consensus 178 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------~~~~a~~ 236 (400)
-|..+|...+..+.. .+.++-....++.|.+-|+.-|..+|+.|++.+-+-. +-+=+++
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~ 144 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIK 144 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHH
Confidence 466677777776643 4677778888889999999999999999998775532 2344789
Q ss_pred HHHHHHHcCCCCCHHhHHHHHHHHHhcCCH
Q 040367 237 LLDLMIQIGVRPNAFVYNTLMDGFCLTGRV 266 (400)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 266 (400)
++++|...|+.||..+-..+++++.+.+-.
T Consensus 145 vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 145 VLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 999999999999999999999999887653
No 268
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.54 E-value=0.2 Score=40.60 Aligned_cols=79 Identities=8% Similarity=0.093 Sum_probs=46.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHH-----cCCCCCHHHHH
Q 040367 285 VFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQR-----DGVAADTWTYR 359 (400)
Q Consensus 285 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 359 (400)
..++..++..+...|+.+.+.+.++++..... -+...|..++.+|.+.|+...|+..++.+.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 34455566666666666666666666666542 2555666666666666666666666665544 25555555554
Q ss_pred HHHHH
Q 040367 360 TFIDG 364 (400)
Q Consensus 360 ~l~~~ 364 (400)
.+...
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 44433
No 269
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.52 E-value=1.2 Score=37.05 Aligned_cols=138 Identities=12% Similarity=0.134 Sum_probs=86.8
Q ss_pred hHHHHHHHHHHHhCCCCCChHhHHHHHHHHHh--cC----CHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhCCC-
Q 040367 161 VDKAKELFLQMKDENINPDVVTYTSVIRGFCY--AN----DWNEAKCLLIEMMDQGV---QPNVVTFNVIMDELCKNGK- 230 (400)
Q Consensus 161 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~- 230 (400)
+++.+.+++.+.+.|+.-+..+|-+....... .. ....|..+|+.|.+... .++-..+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 56778888888888888877666554433333 22 35688899999987641 2344555555543 3333
Q ss_pred ---hHHHHHHHHHHHHcCCCCCHH--hHHHHHHHHHhcCC--HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 040367 231 ---MDEASRLLDLMIQIGVRPNAF--VYNTLMDGFCLTGR--VNRAKELFVSMESMGCTHTVFSYSILINGYCKNKE 300 (400)
Q Consensus 231 ---~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 300 (400)
.+.++.+++.+.+.|+..+.. ....++........ ..++.++++.+.+.++++....|..+.-...-.+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~ 232 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDP 232 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCc
Confidence 356677888888877765433 23333333322222 45788899999999988888887766654433333
No 270
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.51 E-value=0.034 Score=29.10 Aligned_cols=25 Identities=8% Similarity=0.014 Sum_probs=16.7
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHH
Q 040367 358 YRTFIDGLCKNSYIVEAVELFRTLR 382 (400)
Q Consensus 358 ~~~l~~~~~~~g~~~~a~~~~~~~~ 382 (400)
|..|...|.+.|++++|+++|++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5566777777777777777777754
No 271
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.35 E-value=0.79 Score=33.94 Aligned_cols=138 Identities=17% Similarity=0.175 Sum_probs=75.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHH
Q 040367 86 NAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEP-NVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKA 164 (400)
Q Consensus 86 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a 164 (400)
+...|...++ +.+.+..++|+.-|..+.+.|... .+-............|+...|...|+++-...+.+....
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~r----- 131 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGR----- 131 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhh-----
Confidence 4445555554 456677788888888887765332 122223344455666776666666665544332211100
Q ss_pred HHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 040367 165 KELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQI 244 (400)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 244 (400)
|..- .--.-.+...|.++......+.+...+-+.-...-..|.-+-.+.|++..|.+.|.++...
T Consensus 132 --------------d~AR-lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 132 --------------DLAR-LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred --------------HHHH-HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 0000 0011234566777777777766665544444444555666666777777777777777654
No 272
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.19 E-value=0.28 Score=39.30 Aligned_cols=104 Identities=18% Similarity=0.267 Sum_probs=55.9
Q ss_pred CCHHhHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhh
Q 040367 248 PNAFVYNTLMDGFCLT-----GRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVI 322 (400)
Q Consensus 248 ~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 322 (400)
-|..+|...+..+... +..+-....++.|.+.|+.-|..+|..|+..+-+..-. |. ..
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfi----------------P~-nv 127 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFI----------------PQ-NV 127 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccc----------------cH-HH
Confidence 3556666666655432 44555556667777777777777777777765443211 10 01
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCc
Q 040367 323 YNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSY 370 (400)
Q Consensus 323 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 370 (400)
+......| -.+-+-+++++++|...|+.||..+-..|++++.+.|-
T Consensus 128 fQ~~F~HY--P~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 128 FQKVFLHY--PQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHhhC--chhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 11111111 11223355666666666666666666666666655543
No 273
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.15 E-value=0.37 Score=39.18 Aligned_cols=78 Identities=17% Similarity=0.225 Sum_probs=59.0
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCchhhHHH
Q 040367 251 FVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLS-----KGIKPDVVIYNT 325 (400)
Q Consensus 251 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 325 (400)
.++..++..+...|+.+.+...++++.... +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 455667777778888888888888888776 56777888888888888888888888877765 477777776666
Q ss_pred HHHH
Q 040367 326 LFVV 329 (400)
Q Consensus 326 l~~~ 329 (400)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5555
No 274
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.01 E-value=1.2 Score=34.35 Aligned_cols=55 Identities=11% Similarity=0.025 Sum_probs=24.7
Q ss_pred CCCcccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 040367 154 EFGVEGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQ 209 (400)
Q Consensus 154 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 209 (400)
-++..|...-|.-=|.+..... |.-+..||-+.-.+...|+++.|.+.|+...+.
T Consensus 74 lYDSlGL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL 128 (297)
T COG4785 74 LYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL 128 (297)
T ss_pred hhhhhhHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc
Confidence 3444444444444444443332 112334444444445555555555555555543
No 275
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.00 E-value=0.48 Score=35.94 Aligned_cols=97 Identities=15% Similarity=0.016 Sum_probs=60.7
Q ss_pred hhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC-hhhHH--H
Q 040367 18 CSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPD--LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPN-AVTFT--S 92 (400)
Q Consensus 18 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~--~ 92 (400)
..+..+...|.+.|+.+.|++.|.++......+. ...+-.+|......+++..+...+.++...-..+. ...-+ .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 3577788888888888888888888876643333 34567777888888888888777776655421211 11111 1
Q ss_pred H--HHHHHhcCCHHHHHHHHHHHH
Q 040367 93 L--IKGLCAESRIMEAAALFTKLR 114 (400)
Q Consensus 93 l--~~~~~~~~~~~~a~~~~~~~~ 114 (400)
. .-.+...+++..|-+.|-...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 1 112335677877777765543
No 276
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.82 E-value=0.11 Score=26.65 Aligned_cols=28 Identities=14% Similarity=0.090 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 040367 356 WTYRTFIDGLCKNSYIVEAVELFRTLRI 383 (400)
Q Consensus 356 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 383 (400)
.+|..+..+|...|++++|+..|++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3456666666677777777777766665
No 277
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.78 E-value=2 Score=35.65 Aligned_cols=114 Identities=12% Similarity=0.023 Sum_probs=47.5
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh----hhHHHHHHHHHhcCCHHH
Q 040367 228 NGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTV----FSYSILINGYCKNKEIEG 303 (400)
Q Consensus 228 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~ 303 (400)
.|+..+|-..++++++. .+.|...+...-.+|...|+...-...++++...= .++. ..-..+.-++..+|-+++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcHHHHHHHHHHhhHHHhccchh
Confidence 34444444444544443 23344444444444555555555444444444320 1121 111222223334555555
Q ss_pred HHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHH
Q 040367 304 ALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFD 344 (400)
Q Consensus 304 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 344 (400)
|.+.-++..+.+ +.|.-...++...+-..|+..++.+...
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~ 233 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMY 233 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHH
Confidence 555555544432 1122233333334444455555554443
No 278
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.78 E-value=3.8 Score=38.85 Aligned_cols=198 Identities=14% Similarity=0.073 Sum_probs=109.1
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHH-HHHhCCChHHHHHHHHHHHHc----CCCCCHHhHHHHHH
Q 040367 191 CYANDWNEAKCLLIEMMDQGVQPNV-------VTFNVIMD-ELCKNGKMDEASRLLDLMIQI----GVRPNAFVYNTLMD 258 (400)
Q Consensus 191 ~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~ 258 (400)
....++++|..++.++...-..|+. ..++.+-. .....|+++.|.++.+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 4567899999998887654222221 12333322 234578899999998888765 22334556667777
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCChhh---HHHHH--HHHHhcCCHH--HHHHHHHHHHhC---CCC---CchhhHHH
Q 040367 259 GFCLTGRVNRAKELFVSMESMGCTHTVFS---YSILI--NGYCKNKEIE--GALSLYGEMLSK---GIK---PDVVIYNT 325 (400)
Q Consensus 259 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~--~~~~~~~~~~--~a~~~~~~~~~~---~~~---~~~~~~~~ 325 (400)
+..-.|++++|..+..+..+....-+... |..+. ..+...|+.. +....+...... ..+ +-..+...
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 88889999999999888765422333333 33332 2345566332 223333322221 111 11233444
Q ss_pred HHHHHHh-hCcHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCcHHHHHHHHHHHHHhcccc
Q 040367 326 LFVVLFE-IHQVERAFKLFDEMQRDGVAADTWTYR--TFIDGLCKNSYIVEAVELFRTLRILKCEL 388 (400)
Q Consensus 326 l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 388 (400)
+..++.+ .+...++..-++-.......|-..... .|+......|+.++|...+.++......+
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~ 651 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNG 651 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 4555444 122233333333333332222222222 67778888999999999999987544333
No 279
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.77 E-value=1.6 Score=34.44 Aligned_cols=208 Identities=10% Similarity=0.120 Sum_probs=101.3
Q ss_pred hhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 040367 18 CSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGL 97 (400)
Q Consensus 18 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 97 (400)
..|..-..+|....++++|...+.+..+- ...+...|. ..+.++.|.-+.+++.+. +--...|+.....|
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHH
Confidence 35666677788888888888877776532 121222111 112233333344443332 11223344444555
Q ss_pred HhcCCHHHHHHHHHHHHHc--CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHH-
Q 040367 98 CAESRIMEAAALFTKLRVF--GCEPN--VFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMK- 172 (400)
Q Consensus 98 ~~~~~~~~a~~~~~~~~~~--~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~- 172 (400)
.++|.++.|-..+++.-+. +..|+ ...|..-+......++...|.+++.+....- .....+.+|-..+.+-.
T Consensus 102 ~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~l---Vrl~kf~Eaa~a~lKe~~ 178 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVL---VRLEKFTEAATAFLKEGV 178 (308)
T ss_pred HHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHh---hhhHHhhHHHHHHHHhhh
Confidence 5555555554444443221 22332 2234444444444444444444444332211 11111222222221111
Q ss_pred ---h-CCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhCCChHHHHHHHH
Q 040367 173 ---D-ENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQG---VQPNVVTFNVIMDELCKNGKMDEASRLLD 239 (400)
Q Consensus 173 ---~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 239 (400)
+ ...+.--..|.+.|-.+.-..++..|.+.++.--+.+ -+-+..+...|+.+|- .|+.+++.+++.
T Consensus 179 ~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 179 AADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKVLS 251 (308)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHHHc
Confidence 1 0111122345566667777889999999998855432 2345677888887664 577777766653
No 280
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.75 E-value=0.82 Score=34.71 Aligned_cols=61 Identities=18% Similarity=0.257 Sum_probs=31.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc--hhhHHHHHHHHHhhCcHHHHHHHHHHHH
Q 040367 287 SYSILINGYCKNKEIEGALSLYGEMLSKGIKPD--VVIYNTLFVVLFEIHQVERAFKLFDEMQ 347 (400)
Q Consensus 287 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 347 (400)
.+..+...|.+.|+.+.|.+.+.++.+....+. ...+-.+++.....+++..+...+.++.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 344555556666666666666665555432222 1233444555555566666555555544
No 281
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.71 E-value=0.09 Score=27.46 Aligned_cols=25 Identities=12% Similarity=0.130 Sum_probs=15.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 040367 183 YTSVIRGFCYANDWNEAKCLLIEMM 207 (400)
Q Consensus 183 ~~~l~~~~~~~~~~~~a~~~~~~~~ 207 (400)
|..|..+|.+.|++++|+++|++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5556666666666666666666643
No 282
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.44 E-value=0.14 Score=26.03 Aligned_cols=27 Identities=15% Similarity=0.106 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 040367 357 TYRTFIDGLCKNSYIVEAVELFRTLRI 383 (400)
Q Consensus 357 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 383 (400)
.+..+...+...|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455566666666777777766666665
No 283
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.41 E-value=4.2 Score=37.73 Aligned_cols=323 Identities=12% Similarity=0.099 Sum_probs=164.3
Q ss_pred hccCChhHHHHHHHHHH--------hCCCCCCHHHHH-----HHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHH
Q 040367 28 AKNKHYDTVLSLFKRLN--------STGLFPDLYTYN-----ILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLI 94 (400)
Q Consensus 28 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 94 (400)
.+..++++-..+.+.+. ..|++.+..-|. .+++-+...+.+..|+++-..+-..- ..+..+|....
T Consensus 400 l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~-~~~~~Vl~~Wa 478 (829)
T KOG2280|consen 400 LRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPE-SQGDRVLLEWA 478 (829)
T ss_pred cccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcc-ccccHHHHHHH
Confidence 34455555444444332 335665555443 34556667777888888777664321 11245666666
Q ss_pred HHHHhcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHH
Q 040367 95 KGLCAESR---IMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQM 171 (400)
Q Consensus 95 ~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 171 (400)
.-+.+..+ -+-+..+-+++... ..+..+|..+.+.....|+++-|..+++.=...+......=+.+
T Consensus 479 ~~kI~~~d~~d~~vld~I~~kls~~--~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~--------- 547 (829)
T KOG2280|consen 479 RRKIKQSDKMDEEVLDKIDEKLSAK--LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMK--------- 547 (829)
T ss_pred HHHHhccCccchHHHHHHHHHhccc--CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccc---------
Confidence 66665532 22233333333321 13455677777777888888888777665332221111100111
Q ss_pred HhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----------CCCCCHHHHHHHHH--------HHHhCCChH
Q 040367 172 KDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQ-----------GVQPNVVTFNVIMD--------ELCKNGKMD 232 (400)
Q Consensus 172 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~l~~--------~~~~~~~~~ 232 (400)
.+...+.-+...|+.+-...++-.+..+ ..+.....|.-+++ .+...++-.
T Consensus 548 ----------~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~ 617 (829)
T KOG2280|consen 548 ----------DSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNH 617 (829)
T ss_pred ----------hHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccch
Confidence 1222333334444444444443333221 01111122222222 111122222
Q ss_pred HHHHHH--HHHHHc-CCCCCHHhHHHHHHHHHhcCCH----------HHHHHHHHHHHh-cCCCCChhhHHHHHHHHHhc
Q 040367 233 EASRLL--DLMIQI-GVRPNAFVYNTLMDGFCLTGRV----------NRAKELFVSMES-MGCTHTVFSYSILINGYCKN 298 (400)
Q Consensus 233 ~a~~~~--~~~~~~-~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~ 298 (400)
++...| +..... .+.+-.........++.+.... .+-..+.+.+.. .+.....-+.+--+.-+...
T Consensus 618 ~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~ 697 (829)
T KOG2280|consen 618 QALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILI 697 (829)
T ss_pred hhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHc
Confidence 222111 110000 0111222233344445444331 111222222222 22223344556666778888
Q ss_pred CCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHH
Q 040367 299 KEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELF 378 (400)
Q Consensus 299 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 378 (400)
|+..+|.++-++.+ -||...|..-+.+++..+++++-+++-+.... +.-|.-...+|.+.|+.++|.+++
T Consensus 698 g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~~~n~~EA~KYi 767 (829)
T KOG2280|consen 698 GQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACLKQGNKDEAKKYI 767 (829)
T ss_pred cchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHhcccHHHHhhhh
Confidence 99999999877765 46888888889999999999988776554431 344666788999999999999988
Q ss_pred HHHH
Q 040367 379 RTLR 382 (400)
Q Consensus 379 ~~~~ 382 (400)
-+..
T Consensus 768 prv~ 771 (829)
T KOG2280|consen 768 PRVG 771 (829)
T ss_pred hccC
Confidence 7765
No 284
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=94.32 E-value=0.64 Score=30.50 Aligned_cols=46 Identities=4% Similarity=0.158 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHH
Q 040367 303 GALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQR 348 (400)
Q Consensus 303 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 348 (400)
++.+-+..+......|++....+.+++|.+.+++..|+++|+..+.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444445555555666666666666666666666666666666553
No 285
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.28 E-value=1.6 Score=32.46 Aligned_cols=28 Identities=14% Similarity=0.412 Sum_probs=12.7
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhCCChH
Q 040367 205 EMMDQGVQPNVVTFNVIMDELCKNGKMD 232 (400)
Q Consensus 205 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 232 (400)
.+.+.+++|+...+..+++.+.+.|++.
T Consensus 19 Sl~~~~i~~~~~L~~lli~lLi~~~~~~ 46 (167)
T PF07035_consen 19 SLNQHNIPVQHELYELLIDLLIRNGQFS 46 (167)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHH
Confidence 3333444444444444444444444433
No 286
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.18 E-value=1.7 Score=32.28 Aligned_cols=135 Identities=16% Similarity=0.120 Sum_probs=95.3
Q ss_pred ChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChh-hH--H
Q 040367 16 PVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPD-LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAV-TF--T 91 (400)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~--~ 91 (400)
+...|..-+. +.+.+..++|+.-|..+...|...= +-............|+...|...|.++-.....|-.. -. .
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 4455655554 4677889999999999998875421 2223334456678899999999999998764333322 11 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcC
Q 040367 92 SLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASG 151 (400)
Q Consensus 92 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 151 (400)
.-.-.+..+|.++......+-+...+-+.-...-..|.-+-.+.|++.+|.++|..+...
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 112345678999999988888776654556667778888999999999999999988764
No 287
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=94.05 E-value=0.58 Score=30.67 Aligned_cols=63 Identities=6% Similarity=0.091 Sum_probs=49.8
Q ss_pred cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcccchhHHHHHHhh
Q 040367 335 QVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTLRILKCELDIRAYNCLID 398 (400)
Q Consensus 335 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~ 398 (400)
+.=++.+-++.+....+.|++.+..+.+++|.+.+++.-|+++++..+.+ +..+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence 44466777777888889999999999999999999999999999988843 2334556766654
No 288
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.98 E-value=1.8 Score=31.83 Aligned_cols=19 Identities=21% Similarity=0.193 Sum_probs=9.0
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 040367 295 YCKNKEIEGALSLYGEMLS 313 (400)
Q Consensus 295 ~~~~~~~~~a~~~~~~~~~ 313 (400)
+...|++.+|..+++++.+
T Consensus 54 ~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHhCCHHHHHHHHHHHhc
Confidence 3444455555555554443
No 289
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.88 E-value=2.4 Score=34.84 Aligned_cols=103 Identities=17% Similarity=0.236 Sum_probs=66.1
Q ss_pred CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC---CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChh
Q 040367 210 GVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIG---VRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVF 286 (400)
Q Consensus 210 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 286 (400)
|.+....+...++.......+++.+...+-++.... ..++.. -...++.+ -.-++++++.++..-+..|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 344455555555555555677777777777665531 111111 11233333 2346678888888888888888888
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 040367 287 SYSILINGYCKNKEIEGALSLYGEMLSK 314 (400)
Q Consensus 287 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 314 (400)
+++.+++.+.+.+++.+|..+...|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 8888888888888888888877766654
No 290
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=93.81 E-value=0.55 Score=31.14 Aligned_cols=46 Identities=7% Similarity=0.169 Sum_probs=25.5
Q ss_pred HHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHc
Q 040367 304 ALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRD 349 (400)
Q Consensus 304 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 349 (400)
..+-+..+....+.|++....+.+++|.+.+++..|+++|+..+.+
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 4444445555556666666666666666666666666666666543
No 291
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.78 E-value=0.091 Score=27.02 Aligned_cols=19 Identities=26% Similarity=0.305 Sum_probs=7.4
Q ss_pred hhhHHHHHHHHHhcCCHHH
Q 040367 285 VFSYSILINGYCKNKEIEG 303 (400)
Q Consensus 285 ~~~~~~l~~~~~~~~~~~~ 303 (400)
...|..+...|...|++++
T Consensus 13 ~~a~~nla~~~~~~g~~~~ 31 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEE 31 (34)
T ss_pred HHHHHHHHHHHHHCcCHHh
Confidence 3333333333333333333
No 292
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.57 E-value=2.3 Score=31.70 Aligned_cols=136 Identities=12% Similarity=0.130 Sum_probs=86.8
Q ss_pred HHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 040367 164 AKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQ 243 (400)
Q Consensus 164 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 243 (400)
..+.++.+...+++|+...+..+++.+.+.|++.. +..+...++-+|.......+-.+. +.+..+.++--.|.+
T Consensus 13 llEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLk 86 (167)
T PF07035_consen 13 LLEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLK 86 (167)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHH
Confidence 34566667778899999999999999999998654 445555566667665555443332 233444444444443
Q ss_pred cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040367 244 IGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLS 313 (400)
Q Consensus 244 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 313 (400)
. . ...+..++..+...|++-+|.++.+...... ......++.+..+.+|...-..+++-..+
T Consensus 87 R-L---~~~~~~iievLL~~g~vl~ALr~ar~~~~~~----~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 87 R-L---GTAYEEIIEVLLSKGQVLEALRYARQYHKVD----SVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred H-h---hhhHHHHHHHHHhCCCHHHHHHHHHHcCCcc----cCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 0 0134567778889999999999887764322 22235566676677776665555555544
No 293
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=93.57 E-value=0.011 Score=43.12 Aligned_cols=85 Identities=12% Similarity=0.126 Sum_probs=52.6
Q ss_pred HHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 040367 22 ILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAES 101 (400)
Q Consensus 22 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (400)
.++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++.. +..-...++..|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcc
Confidence 356777777777777777777776654556777777778887777667766666511 1122234556666666
Q ss_pred CHHHHHHHHHHH
Q 040367 102 RIMEAAALFTKL 113 (400)
Q Consensus 102 ~~~~a~~~~~~~ 113 (400)
.++++.-++.++
T Consensus 85 l~~~a~~Ly~~~ 96 (143)
T PF00637_consen 85 LYEEAVYLYSKL 96 (143)
T ss_dssp SHHHHHHHHHCC
T ss_pred hHHHHHHHHHHc
Confidence 666666655543
No 294
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=93.36 E-value=1.6 Score=29.12 Aligned_cols=60 Identities=7% Similarity=0.110 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcccchhHHHHHHhh
Q 040367 338 RAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTLRILKCELDIRAYNCLID 398 (400)
Q Consensus 338 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~ 398 (400)
+..+-++.+....+.|++.+..+.+.+|.+.+++.-|+++++..+.+ +.+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 56666777777788999999999999999999999999999999854 2333336766654
No 295
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.25 E-value=1.1 Score=36.77 Aligned_cols=103 Identities=13% Similarity=0.138 Sum_probs=73.0
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchh
Q 040367 245 GVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMG---CTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVV 321 (400)
Q Consensus 245 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 321 (400)
|.+....+...++..-....+++.++..+-+++... ..++.. -..+++.+. .-++++++.++..=++.|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 455566666677777667788888888887776531 111211 123333333 336778888888888889999999
Q ss_pred hHHHHHHHHHhhCcHHHHHHHHHHHHHc
Q 040367 322 IYNTLFVVLFEIHQVERAFKLFDEMQRD 349 (400)
Q Consensus 322 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 349 (400)
+++.++..+.+.+++..|..+.-.|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999888888777654
No 296
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.11 E-value=1.5 Score=33.53 Aligned_cols=72 Identities=10% Similarity=0.032 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc---CCCCCHHhHHHHHHHHHhcCCHHHH
Q 040367 197 NEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQI---GVRPNAFVYNTLMDGFCLTGRVNRA 269 (400)
Q Consensus 197 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a 269 (400)
+.|.+.|-++...+.--++.....+...| ...+.+++..++.+..+. +-.+|+..+.+|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 44455555555444333333333333322 244555555555555443 1234555555555555555555554
No 297
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=93.10 E-value=0.38 Score=26.44 Aligned_cols=25 Identities=12% Similarity=0.004 Sum_probs=13.3
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHhc
Q 040367 361 FIDGLCKNSYIVEAVELFRTLRILK 385 (400)
Q Consensus 361 l~~~~~~~g~~~~a~~~~~~~~~~~ 385 (400)
+..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4445555555555555555555433
No 298
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.08 E-value=2.6 Score=30.98 Aligned_cols=107 Identities=10% Similarity=-0.020 Sum_probs=62.7
Q ss_pred HHHHhccCChhHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 040367 24 FGCLAKNKHYDTVLSLFKRLNSTGLFPDLYT-YNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESR 102 (400)
Q Consensus 24 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 102 (400)
+..-.+.++.+.+..++.-+.-. .|.... -..-...++..|++.+|..+++.+... .|.......|+..|....+
T Consensus 17 ~~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--~~~~p~~kALlA~CL~~~~ 92 (160)
T PF09613_consen 17 LSVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER--APGFPYAKALLALCLYALG 92 (160)
T ss_pred HHHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHHcC
Confidence 33446678999999999988875 344332 233345577899999999999998765 3444444555555554433
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 040367 103 IMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGH 137 (400)
Q Consensus 103 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 137 (400)
-..=...-+++.+.+ +|..+. .++..+....+
T Consensus 93 D~~Wr~~A~evle~~--~d~~a~-~Lv~~Ll~~~~ 124 (160)
T PF09613_consen 93 DPSWRRYADEVLESG--ADPDAR-ALVRALLARAD 124 (160)
T ss_pred ChHHHHHHHHHHhcC--CChHHH-HHHHHHHHhcc
Confidence 333333334455543 333332 34444444444
No 299
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.99 E-value=8.4 Score=36.48 Aligned_cols=85 Identities=14% Similarity=0.118 Sum_probs=54.5
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 040367 21 NILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAE 100 (400)
Q Consensus 21 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 100 (400)
..-.+.+.+.|++++|...|-+.... +.|. .++.-|....+...-...++.+.+.|.. +...-..|+.+|.+.
T Consensus 372 ~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKl 444 (933)
T KOG2114|consen 372 RKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKL 444 (933)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHh
Confidence 33455667889999998888776543 2322 2444455555666666777777777754 455556777888887
Q ss_pred CCHHHHHHHHHH
Q 040367 101 SRIMEAAALFTK 112 (400)
Q Consensus 101 ~~~~~a~~~~~~ 112 (400)
++.++-.+..+.
T Consensus 445 kd~~kL~efI~~ 456 (933)
T KOG2114|consen 445 KDVEKLTEFISK 456 (933)
T ss_pred cchHHHHHHHhc
Confidence 776665555443
No 300
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.91 E-value=6.4 Score=34.90 Aligned_cols=76 Identities=11% Similarity=0.099 Sum_probs=53.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHhHHHHH
Q 040367 182 TYTSVIRGFCYANDWNEAKCLLIEMMDQGVQ-PNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPN-AFVYNTLM 257 (400)
Q Consensus 182 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~ 257 (400)
.-..+..++-+.|+.++|++.++++.+.... ....+...++.++...+.+.++..++.+-.+...+.+ ...|+..+
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 3345666777889999999999999865322 2344677889999999999999999988755433222 33454433
No 301
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=92.63 E-value=4.2 Score=32.12 Aligned_cols=88 Identities=20% Similarity=0.182 Sum_probs=38.6
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHH
Q 040367 260 FCLTGRVNRAKELFVSMESMGCTH-TVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVER 338 (400)
Q Consensus 260 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 338 (400)
+...++.+.+...+....... +. ....+..+...+...++++.+...+......... ....+..+...+...+..+.
T Consensus 177 ~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 254 (291)
T COG0457 177 LEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEE 254 (291)
T ss_pred HHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHH
Confidence 334444455554444444432 11 2334444444455555555555555555443211 12222223333334445555
Q ss_pred HHHHHHHHHHc
Q 040367 339 AFKLFDEMQRD 349 (400)
Q Consensus 339 a~~~~~~~~~~ 349 (400)
+...+.+....
T Consensus 255 ~~~~~~~~~~~ 265 (291)
T COG0457 255 ALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHh
Confidence 55555555543
No 302
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.49 E-value=4.8 Score=32.42 Aligned_cols=159 Identities=14% Similarity=0.152 Sum_probs=94.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC---C--CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc-----CCCCCHH
Q 040367 182 TYTSVIRGFCYANDWNEAKCLLIEMMDQ---G--VQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQI-----GVRPNAF 251 (400)
Q Consensus 182 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~ 251 (400)
+...++....+.|++++....|.+++.- . -..+....+.++.....+.+.+.....++.-+.. +-+.--.
T Consensus 67 ALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFK 146 (440)
T KOG1464|consen 67 ALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFK 146 (440)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeee
Confidence 4456678888899999988888887631 1 1234456677777666666655544444332221 1111122
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-----------CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCc
Q 040367 252 VYNTLMDGFCLTGRVNRAKELFVSMESMGC-----------THTVFSYSILINGYCKNKEIEGALSLYGEMLSK-GIKPD 319 (400)
Q Consensus 252 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~ 319 (400)
+-..|...|...+.+.+...+++++..... ..-...|..=++.|....+-.+-..++++.+.. ..-|.
T Consensus 147 TNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPH 226 (440)
T KOG1464|consen 147 TNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPH 226 (440)
T ss_pred ccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCc
Confidence 334577778888888888888888854311 112345666778888887777777777766543 22344
Q ss_pred hhhHHHHHHHH-----HhhCcHHHHHH
Q 040367 320 VVIYNTLFVVL-----FEIHQVERAFK 341 (400)
Q Consensus 320 ~~~~~~l~~~~-----~~~~~~~~a~~ 341 (400)
+... .+++-| .+.|++++|-.
T Consensus 227 PlIm-GvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 227 PLIM-GVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred hHHH-hHHHHcCCccccccchHHHHHh
Confidence 4433 333333 45677766643
No 303
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.36 E-value=13 Score=36.94 Aligned_cols=81 Identities=17% Similarity=0.131 Sum_probs=48.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchh--hHHHHHHHHHhh
Q 040367 256 LMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVV--IYNTLFVVLFEI 333 (400)
Q Consensus 256 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~ 333 (400)
....+.....+++|.-.|+..-+ ....+.+|..+|+|.+|+.+..++... -+.. +-..|..-+...
T Consensus 945 ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~ 1012 (1265)
T KOG1920|consen 945 YADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQ 1012 (1265)
T ss_pred HHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHc
Confidence 33444455666666666655432 234566777788888888777766432 1211 124556666777
Q ss_pred CcHHHHHHHHHHHHH
Q 040367 334 HQVERAFKLFDEMQR 348 (400)
Q Consensus 334 ~~~~~a~~~~~~~~~ 348 (400)
+++-+|-+++.+...
T Consensus 1013 ~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1013 RKHYEAAKILLEYLS 1027 (1265)
T ss_pred ccchhHHHHHHHHhc
Confidence 777777777776654
No 304
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.26 E-value=3 Score=31.94 Aligned_cols=92 Identities=11% Similarity=0.078 Sum_probs=41.7
Q ss_pred HHhcCChhhHHHHHHHHHhcCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 040367 62 FCKMGRVSHGFVVLGRILRSCFTPNA----VTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGH 137 (400)
Q Consensus 62 ~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 137 (400)
+.+.|++++|..-|..++..-++... ..|..-..++.+.+.++.|+.--.+.++.+ +........-..+|.+...
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKMEK 183 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhhh
Confidence 34455555555555555544211111 122233334445555555555555544443 2223333333445555555
Q ss_pred hHHHHHHHHHHHcCCCC
Q 040367 138 TIVALNLFEEMASGNGE 154 (400)
Q Consensus 138 ~~~a~~~~~~~~~~~~~ 154 (400)
++.|+.-|.++...++.
T Consensus 184 ~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 184 YEEALEDYKKILESDPS 200 (271)
T ss_pred HHHHHHHHHHHHHhCcc
Confidence 55555555555554443
No 305
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=92.14 E-value=4 Score=30.72 Aligned_cols=117 Identities=11% Similarity=0.062 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCCC
Q 040367 103 IMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTG---HTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENINPD 179 (400)
Q Consensus 103 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 179 (400)
++.|.+.++.-...+ +.|...++.-..++.... +..++.++ +++|+.-|++....+ |..
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~m----------------iedAisK~eeAL~I~-P~~ 68 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKM----------------IEDAISKFEEALKIN-PNK 68 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHH----------------HHHHHHHHHHHHHH--TT-
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHH----------------HHHHHHHHHHHHhcC-Cch
Confidence 455556665544444 556666655555554443 33445444 455666666665543 223
Q ss_pred hHhHHHHHHHHHhcC----C-------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 040367 180 VVTYTSVIRGFCYAN----D-------WNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIG 245 (400)
Q Consensus 180 ~~~~~~l~~~~~~~~----~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 245 (400)
..++..+..++...+ + +++|...|++.... .|+...|+.-+.... +|-++..++.+++
T Consensus 69 hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~------kap~lh~e~~~~~ 137 (186)
T PF06552_consen 69 HDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA------KAPELHMEIHKQG 137 (186)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH------THHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH------hhHHHHHHHHHHH
Confidence 456666666665433 2 45555555555553 577777777776653 4556666665554
No 306
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=91.96 E-value=9.3 Score=34.61 Aligned_cols=357 Identities=13% Similarity=0.026 Sum_probs=193.2
Q ss_pred chhHHHHhcCCCCCChhhHHHHHHHH-hccCChhHHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 040367 2 CIFDYMLNMRPSPPPVCSFNILFGCL-AKNKHYDTVLSLFKRLNST-GLF-PDLYTYNILINCFCKMGRVSHGFVVLGRI 78 (400)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 78 (400)
.+|++.+..-|. ++..|...+..+ ...|+.+.....|+.+... |.. .+...|...|.--...+++.....+++++
T Consensus 100 ~Vfergv~aip~--SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRi 177 (577)
T KOG1258|consen 100 KVFERGVQAIPL--SVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERI 177 (577)
T ss_pred HHHHHHHHhhhh--HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 467777777665 777887666644 4578889999999988764 321 24557788888888889999999999999
Q ss_pred HhcCCCCChhhHHHHHHHHH---hc------CCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHh-cCChHHHHHH
Q 040367 79 LRSCFTPNAVTFTSLIKGLC---AE------SRIMEAAALFTKLRVF----GCEPNVFTYNTLINGLYR-TGHTIVALNL 144 (400)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~~~---~~------~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~-~~~~~~a~~~ 144 (400)
++.. ...++....-|. .. ...+++.++-...... ...+....+..-+.--.. .+..+++...
T Consensus 178 leiP----~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~ 253 (577)
T KOG1258|consen 178 LEIP----LHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTI 253 (577)
T ss_pred Hhhh----hhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHH
Confidence 8752 222222222221 11 2233333333222210 000111111111111111 1111111111
Q ss_pred HHHHHcCC-CCCCcccchHHHHHHHHHHHhC-------CCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 040367 145 FEEMASGN-GEFGVEGFVDKAKELFLQMKDE-------NINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVV 216 (400)
Q Consensus 145 ~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 216 (400)
+.+..... ..+.......+....++.-+.+ -.+++..+|...+..-...|+++.+.-.|+...-- +..=..
T Consensus 254 l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~e 332 (577)
T KOG1258|consen 254 LKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDE 332 (577)
T ss_pred HHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHH
Confidence 11111000 0000000011122222222221 11235667888888888999999999999887631 111122
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 040367 217 TFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYC 296 (400)
Q Consensus 217 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 296 (400)
.|-..+.-....|+.+-+..++....+-..+..+.+--.-....-..|++..|..+++.+.+.- +-....-..-+....
T Consensus 333 fWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~ 411 (577)
T KOG1258|consen 333 FWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWER 411 (577)
T ss_pred HHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHH
Confidence 3444444445558999998888887775444333322222223445789999999999998764 222223333345556
Q ss_pred hcCCHHHHHH---HHHHHHhCCCCCchhhHHHHHH-----HHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 040367 297 KNKEIEGALS---LYGEMLSKGIKPDVVIYNTLFV-----VLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKN 368 (400)
Q Consensus 297 ~~~~~~~a~~---~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 368 (400)
+.|+.+.+.. ++..... |-. +......+.. .+.-.++.+.|..++.++.+. .+++...|..+++.+...
T Consensus 412 r~~~~~~~~~~~~l~s~~~~-~~~-~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~ 488 (577)
T KOG1258|consen 412 RKGNLEDANYKNELYSSIYE-GKE-NNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQ 488 (577)
T ss_pred HhcchhhhhHHHHHHHHhcc-ccc-CcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhC
Confidence 7788877773 3333222 211 2222222222 223468889999999999886 677788888888877665
Q ss_pred C
Q 040367 369 S 369 (400)
Q Consensus 369 g 369 (400)
+
T Consensus 489 ~ 489 (577)
T KOG1258|consen 489 P 489 (577)
T ss_pred C
Confidence 5
No 307
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.93 E-value=0.48 Score=24.06 Aligned_cols=27 Identities=19% Similarity=0.050 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 040367 357 TYRTFIDGLCKNSYIVEAVELFRTLRI 383 (400)
Q Consensus 357 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 383 (400)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455566666666666666666666665
No 308
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.88 E-value=0.57 Score=25.10 Aligned_cols=29 Identities=14% Similarity=0.097 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 040367 355 TWTYRTFIDGLCKNSYIVEAVELFRTLRI 383 (400)
Q Consensus 355 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 383 (400)
..+++.+...|...|++++|..++++..+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35677888888888888888888888763
No 309
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.83 E-value=3.7 Score=31.55 Aligned_cols=74 Identities=8% Similarity=-0.121 Sum_probs=50.6
Q ss_pred hhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCChHHHH
Q 040367 68 VSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKLRVF---GCEPNVFTYNTLINGLYRTGHTIVAL 142 (400)
Q Consensus 68 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~ 142 (400)
-+.|.+.|-.+...+.--++.....|...|. ..+.+++.+++-+..+. +-.+|+..+.+|+..+.+.|+++.|.
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 4566777766666654445555555555554 56778888888777654 22567888888888888888887775
No 310
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.80 E-value=0.55 Score=23.85 Aligned_cols=24 Identities=33% Similarity=0.354 Sum_probs=9.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 040367 289 SILINGYCKNKEIEGALSLYGEML 312 (400)
Q Consensus 289 ~~l~~~~~~~~~~~~a~~~~~~~~ 312 (400)
..+..+|...|++++|+..|++.+
T Consensus 5 ~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 5 YNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCchHHHHHHHHHH
Confidence 333334444444444444444333
No 311
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=91.69 E-value=6.4 Score=32.17 Aligned_cols=71 Identities=10% Similarity=0.099 Sum_probs=55.8
Q ss_pred hHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH-----HhcccchhHHH
Q 040367 322 IYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTLR-----ILKCELDIRAY 393 (400)
Q Consensus 322 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~p~~~~~ 393 (400)
+++.....|..+|.+.+|.++.++.+... +.+...+..++..+...|+--.+.+.++++. +.|+..|...+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 34556678899999999999999998863 4577888899999999999888888888874 55666655443
No 312
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=91.56 E-value=7.8 Score=32.91 Aligned_cols=145 Identities=11% Similarity=0.008 Sum_probs=95.6
Q ss_pred hHHHHhcCCCCCChhhHHHHHHHHhccCC------------hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhH
Q 040367 4 FDYMLNMRPSPPPVCSFNILFGCLAKNKH------------YDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHG 71 (400)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 71 (400)
|++.+...|. |+.+|-.++..--+.-. .+.-+.+++++.+.+ +.+......++..+.+..+.+..
T Consensus 8 l~~~v~~~P~--di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l 84 (321)
T PF08424_consen 8 LNRRVRENPH--DIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKL 84 (321)
T ss_pred HHHHHHhCcc--cHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHH
Confidence 5566677776 99999888865433221 456678899988875 45777888889999999999999
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHh---cCCHHHHHHHHHHHHHc------CC----CCCH-------HHHHHHHHH
Q 040367 72 FVVLGRILRSCFTPNAVTFTSLIKGLCA---ESRIMEAAALFTKLRVF------GC----EPNV-------FTYNTLING 131 (400)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~------~~----~~~~-------~~~~~l~~~ 131 (400)
.+-++++.... +-+...|...+..... .-.++....+|.+.... +. .+.. ..+..+...
T Consensus 85 ~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~f 163 (321)
T PF08424_consen 85 AKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRF 163 (321)
T ss_pred HHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHH
Confidence 99999999874 3367788887775544 23466676666655432 11 0111 223334444
Q ss_pred HHhcCChHHHHHHHHHHHcCC
Q 040367 132 LYRTGHTIVALNLFEEMASGN 152 (400)
Q Consensus 132 ~~~~~~~~~a~~~~~~~~~~~ 152 (400)
+...|..+.|..+++.+.+-+
T Consensus 164 l~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 164 LRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHCCchHHHHHHHHHHHHHH
Confidence 556777666666666665543
No 313
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.46 E-value=0.14 Score=37.27 Aligned_cols=126 Identities=10% Similarity=0.049 Sum_probs=82.6
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 040367 57 ILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTG 136 (400)
Q Consensus 57 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 136 (400)
.++..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++.. +..-...++..|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcc
Confidence 356677778899999999999997766667888999999999998888888888722 1133345677777778
Q ss_pred ChHHHHHHHHHHHcCCCC---CCcccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCC
Q 040367 137 HTIVALNLFEEMASGNGE---FGVEGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYAND 195 (400)
Q Consensus 137 ~~~~a~~~~~~~~~~~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 195 (400)
.++.|.-++.++...... ....+.++.|.+... + .++...|..++..|...+.
T Consensus 85 l~~~a~~Ly~~~~~~~~al~i~~~~~~~~~a~e~~~---~---~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 85 LYEEAVYLYSKLGNHDEALEILHKLKDYEEAIEYAK---K---VDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp SHHHHHHHHHCCTTHTTCSSTSSSTHCSCCCTTTGG---G---CSSSHHHHHHHHHHCTSTC
T ss_pred hHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHH---h---cCcHHHHHHHHHHHHhcCc
Confidence 887887777765442221 122334444442221 1 2346677777777766554
No 314
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=90.88 E-value=18 Score=35.73 Aligned_cols=95 Identities=9% Similarity=0.072 Sum_probs=60.3
Q ss_pred hHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHH----HH---HhcC---ChhhHHHHHHHHHhcCCCCChh
Q 040367 19 SFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILIN----CF---CKMG---RVSHGFVVLGRILRSCFTPNAV 88 (400)
Q Consensus 19 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~---~~~~---~~~~a~~~~~~~~~~~~~~~~~ 88 (400)
++-++=+++...+.+++|+..|+++... +|.-.+.|.+..+ .+ ...| .+++|+.-|+.+... +.-+-
T Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 553 (932)
T PRK13184 477 SCLAVPDAFLAEKLYDQALIFYRRIRES-FPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGG--VGAPL 553 (932)
T ss_pred ecccCcHHHHhhHHHHHHHHHHHHHhhc-CCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCC--CCCch
Confidence 4556667888999999999999999865 2333344433332 22 2333 366777777777643 22223
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 040367 89 TFTSLIKGLCAESRIMEAAALFTKLRVF 116 (400)
Q Consensus 89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 116 (400)
-|..=.-+|-+.|++++-.+.+.-..++
T Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (932)
T PRK13184 554 EYLGKALVYQRLGEYNEEIKSLLLALKR 581 (932)
T ss_pred HHHhHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 3444445677899999888887766654
No 315
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=90.77 E-value=0.97 Score=22.78 Aligned_cols=22 Identities=23% Similarity=0.122 Sum_probs=8.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 040367 93 LIKGLCAESRIMEAAALFTKLR 114 (400)
Q Consensus 93 l~~~~~~~~~~~~a~~~~~~~~ 114 (400)
+...+...|++++|.+.|++..
T Consensus 7 lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 7 LGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHH
Confidence 3334444444444444444433
No 316
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.72 E-value=5 Score=29.13 Aligned_cols=53 Identities=13% Similarity=0.065 Sum_probs=37.5
Q ss_pred hccCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 040367 28 AKNKHYDTVLSLFKRLNSTGLFPDLY-TYNILINCFCKMGRVSHGFVVLGRILRSC 82 (400)
Q Consensus 28 ~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 82 (400)
...++++++..+++.|.-. .|+.. .-..-...+...|++.+|.++++++...+
T Consensus 21 L~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 4478889999999888765 34322 22223445678899999999999988763
No 317
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.56 E-value=12 Score=33.20 Aligned_cols=109 Identities=15% Similarity=0.071 Sum_probs=66.9
Q ss_pred HHHhcCCHHHHHHHHHHHHh---cCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHh-------CCCCCchh--
Q 040367 259 GFCLTGRVNRAKELFVSMES---MGCTHT-----VFSYSILINGYCKNKEIEGALSLYGEMLS-------KGIKPDVV-- 321 (400)
Q Consensus 259 ~~~~~~~~~~a~~~~~~~~~---~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~-- 321 (400)
.+.-.|++.+|.+++...-- .|...+ -..||.|.-.+.+.|.+..+..+|.++.+ .|++|...
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 34556888888777755422 121112 12245666666677788888888877764 34443211
Q ss_pred --------hHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 040367 322 --------IYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKN 368 (400)
Q Consensus 322 --------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 368 (400)
........+...|++-.|.+.|.+.... +..++..|-.+..+|...
T Consensus 329 ls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 329 LSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence 1122344566788888888888877765 556778888888887654
No 318
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.49 E-value=11 Score=32.53 Aligned_cols=53 Identities=11% Similarity=0.159 Sum_probs=27.0
Q ss_pred HHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 040367 24 FGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILR 80 (400)
Q Consensus 24 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 80 (400)
..+..+.|+|+...+........ .++...+..+... ..++++++...++.+..
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~ 57 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQ 57 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHH
Confidence 45566667776644444433322 1233334433333 56666666666655543
No 319
>PRK11619 lytic murein transglycosylase; Provisional
Probab=90.46 E-value=16 Score=34.54 Aligned_cols=105 Identities=12% Similarity=0.049 Sum_probs=62.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHH
Q 040367 91 TSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQ 170 (400)
Q Consensus 91 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 170 (400)
...+..+.+.+++......+.. .+.+...-.....+....|+.++|....+.+-..+... .+..-.+|+.
T Consensus 103 ~~~l~~La~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~-----p~~cd~l~~~ 172 (644)
T PRK11619 103 SRFVNELARREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSL-----PNACDKLFSV 172 (644)
T ss_pred HHHHHHHHHccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC-----ChHHHHHHHH
Confidence 3344455567777776663321 14466666777888888999888877777775544332 4556667777
Q ss_pred HHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 040367 171 MKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEM 206 (400)
Q Consensus 171 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 206 (400)
..+.|.-.+...+.- +......|+...|..+...+
T Consensus 173 ~~~~g~lt~~d~w~R-~~~al~~~~~~lA~~l~~~l 207 (644)
T PRK11619 173 WQQSGKQDPLAYLER-IRLAMKAGNTGLVTYLAKQL 207 (644)
T ss_pred HHHcCCCCHHHHHHH-HHHHHHCCCHHHHHHHHHhc
Confidence 766654444444443 34445666666665555543
No 320
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.43 E-value=5.6 Score=36.03 Aligned_cols=131 Identities=20% Similarity=0.145 Sum_probs=82.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 040367 183 YTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCL 262 (400)
Q Consensus 183 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 262 (400)
.+.++..+.+.|-.++|+++ .+|+.. -.....+.|+++.|.++..+. .+..-|..|.++..+
T Consensus 617 rt~va~Fle~~g~~e~AL~~---------s~D~d~---rFelal~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~ 678 (794)
T KOG0276|consen 617 RTKVAHFLESQGMKEQALEL---------STDPDQ---RFELALKLGRLDIAFDLAVEA------NSEVKWRQLGDAALS 678 (794)
T ss_pred hhhHHhHhhhccchHhhhhc---------CCChhh---hhhhhhhcCcHHHHHHHHHhh------cchHHHHHHHHHHhh
Confidence 34455555555555555433 223221 123445677777777765542 266778888888888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHH
Q 040367 263 TGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKL 342 (400)
Q Consensus 263 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 342 (400)
.+++..|.+.|..... |..|+-.+...|+.+....+-....+.|.. |....++...|+++++.++
T Consensus 679 ~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~l 743 (794)
T KOG0276|consen 679 AGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN------NLAFLAYFLSGDYEECLEL 743 (794)
T ss_pred cccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc------chHHHHHHHcCCHHHHHHH
Confidence 8888888888877663 456666777777777666666666665532 3334456678888888887
Q ss_pred HHHH
Q 040367 343 FDEM 346 (400)
Q Consensus 343 ~~~~ 346 (400)
+.+-
T Consensus 744 Li~t 747 (794)
T KOG0276|consen 744 LIST 747 (794)
T ss_pred HHhc
Confidence 7654
No 321
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=90.37 E-value=6.3 Score=29.71 Aligned_cols=27 Identities=19% Similarity=0.307 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 040367 337 ERAFKLFDEMQRDGVAADTWTYRTFIDGL 365 (400)
Q Consensus 337 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 365 (400)
++|.+.|+++... .|+..+|+.-+...
T Consensus 97 ~kA~~~FqkAv~~--~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 97 EKATEYFQKAVDE--DPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHH---TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CCCcHHHHHHHHHH
Confidence 3334444444332 45555555444443
No 322
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=90.18 E-value=2.6 Score=32.69 Aligned_cols=75 Identities=15% Similarity=0.147 Sum_probs=44.3
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC--CCChhhHHHHHH
Q 040367 20 FNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCF--TPNAVTFTSLIK 95 (400)
Q Consensus 20 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~ 95 (400)
.+..+..+.+.+..++|+...+.-.+.. +.|...-..+++.++-.|++++|..-++..-.... .+-...|..+|.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 4455666667777777777776665553 34555666677777777777777666665544321 223344444444
No 323
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.03 E-value=7.1 Score=29.84 Aligned_cols=90 Identities=13% Similarity=0.079 Sum_probs=40.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCch--hhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCc
Q 040367 293 NGYCKNKEIEGALSLYGEMLSKGIKPDV--VIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSY 370 (400)
Q Consensus 293 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 370 (400)
..+...+++++|..-++........-+. ..--.|.+.....|.+|+|+..++.....++. ......-.+.+...|+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg~ 174 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKGD 174 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcCc
Confidence 3444555555555555554432111010 01112334445555566666555554443221 1222233445555566
Q ss_pred HHHHHHHHHHHHHh
Q 040367 371 IVEAVELFRTLRIL 384 (400)
Q Consensus 371 ~~~a~~~~~~~~~~ 384 (400)
-++|..-|++.++.
T Consensus 175 k~~Ar~ay~kAl~~ 188 (207)
T COG2976 175 KQEARAAYEKALES 188 (207)
T ss_pred hHHHHHHHHHHHHc
Confidence 66666666665554
No 324
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.95 E-value=0.96 Score=24.16 Aligned_cols=25 Identities=24% Similarity=0.234 Sum_probs=11.0
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHHHH
Q 040367 323 YNTLFVVLFEIHQVERAFKLFDEMQ 347 (400)
Q Consensus 323 ~~~l~~~~~~~~~~~~a~~~~~~~~ 347 (400)
++.+...|...|++++|..++++..
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcchhhHHHHHHH
Confidence 3444444444444444444444433
No 325
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=89.93 E-value=19 Score=34.58 Aligned_cols=51 Identities=12% Similarity=0.102 Sum_probs=29.3
Q ss_pred ccchHHHHHHHHHHHhC----CCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040367 158 EGFVDKAKELFLQMKDE----NINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMD 208 (400)
Q Consensus 158 ~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 208 (400)
.|+++.+.++.+..... ...+....+..+..+..-.|++++|..+..+..+
T Consensus 471 ~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~ 525 (894)
T COG2909 471 RGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQ 525 (894)
T ss_pred cCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHH
Confidence 44455555555444332 2233445566666677777777777777766554
No 326
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=89.21 E-value=3.5 Score=32.03 Aligned_cols=76 Identities=16% Similarity=0.135 Sum_probs=54.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHc--CCCCCHHHHHHHHHH
Q 040367 288 YSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRD--GVAADTWTYRTFIDG 364 (400)
Q Consensus 288 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~ 364 (400)
.+..++.+.+.+.+.+++...++-++.+ +.|...-..+++.++-.|++++|..-++-.-.. ...+...+|..++.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 4455667778888999999888777764 335666677888999999999998888776654 223445666666654
No 327
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.07 E-value=8.7 Score=29.54 Aligned_cols=89 Identities=12% Similarity=0.040 Sum_probs=39.1
Q ss_pred HHhccCChhHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 040367 26 CLAKNKHYDTVLSLFKRLNSTGLFPD-----LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAE 100 (400)
Q Consensus 26 ~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 100 (400)
-+.++|++.+|..-|..++..- ++. ...|..-..++.+.+.++.|+.-....++.+.. .......-..+|-+.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKM 181 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhh
Confidence 3445555555555555555431 211 112333334445555555555555554444211 111222223344455
Q ss_pred CCHHHHHHHHHHHHHc
Q 040367 101 SRIMEAAALFTKLRVF 116 (400)
Q Consensus 101 ~~~~~a~~~~~~~~~~ 116 (400)
..+++|+.-|.++.+.
T Consensus 182 ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 182 EKYEEALEDYKKILES 197 (271)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 5555555555555544
No 328
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.07 E-value=8.6 Score=29.43 Aligned_cols=55 Identities=9% Similarity=0.084 Sum_probs=24.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHc
Q 040367 293 NGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRD 349 (400)
Q Consensus 293 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 349 (400)
+.....|.+++|+..+......+.. ......-...+...|+-++|+.-|+..+..
T Consensus 134 rvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 134 RVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 3344455555555555544443221 111223334455555555555555555544
No 329
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=88.62 E-value=12 Score=30.67 Aligned_cols=137 Identities=7% Similarity=0.053 Sum_probs=82.2
Q ss_pred CCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHh-C-CChHHHHHHHHHHHHc-CCCCCHHhHHHHHHHHHhcCCHHHH
Q 040367 194 NDWNEAKCLLIEMMD-QGVQPNVVTFNVIMDELCK-N-GKMDEASRLLDLMIQI-GVRPNAFVYNTLMDGFCLTGRVNRA 269 (400)
Q Consensus 194 ~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~-~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a 269 (400)
..+.+|.++|+.... ..+-.|..+...+++.... . .....-.++.+.+... +..++..+...++..++..+++.+-
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 345566666663222 2244566666666665544 2 1233333444444332 3456677777788888888888888
Q ss_pred HHHHHHHHhc-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHH-----HHhCCCCCchhhHHHHHHHH
Q 040367 270 KELFVSMESM-GCTHTVFSYSILINGYCKNKEIEGALSLYGE-----MLSKGIKPDVVIYNTLFVVL 330 (400)
Q Consensus 270 ~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~l~~~~ 330 (400)
.+++...... +...|...|..++..-...|+..-..++..+ +.+.++..+...-..+-+.+
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 8888777654 4456777888888888888887776666654 23445666655544444443
No 330
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.60 E-value=10 Score=34.53 Aligned_cols=100 Identities=16% Similarity=0.116 Sum_probs=52.2
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHH
Q 040367 190 FCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRA 269 (400)
Q Consensus 190 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 269 (400)
..+.|+.+.|.++..+. .+..-|..|..+..+.+++..|.+.|.+... +..|+-.+...|+.+..
T Consensus 647 al~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l 711 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGL 711 (794)
T ss_pred hhhcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHH
Confidence 34556666665554332 2555666666666666666666666655432 33455555555665544
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 040367 270 KELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGE 310 (400)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 310 (400)
..+-....+.| ..| ....+|...|+++++.+++..
T Consensus 712 ~~la~~~~~~g-~~N-----~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 712 AVLASLAKKQG-KNN-----LAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHHhhc-ccc-----hHHHHHHHcCCHHHHHHHHHh
Confidence 44444444443 222 222344456666666665543
No 331
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=88.57 E-value=2.4 Score=24.49 Aligned_cols=22 Identities=18% Similarity=-0.065 Sum_probs=10.3
Q ss_pred HHHHHhcCcHHHHHHHHHHHHH
Q 040367 362 IDGLCKNSYIVEAVELFRTLRI 383 (400)
Q Consensus 362 ~~~~~~~g~~~~a~~~~~~~~~ 383 (400)
.-++.+.|++++|.+..+.+++
T Consensus 8 Aig~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 8 AIGHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHh
Confidence 3344455555555555555544
No 332
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.42 E-value=1.7 Score=21.87 Aligned_cols=26 Identities=27% Similarity=0.277 Sum_probs=12.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040367 288 YSILINGYCKNKEIEGALSLYGEMLS 313 (400)
Q Consensus 288 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 313 (400)
|..+...|...|++++|.+.|++..+
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444455555555555555554443
No 333
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=88.20 E-value=6 Score=27.63 Aligned_cols=44 Identities=5% Similarity=0.203 Sum_probs=27.9
Q ss_pred HHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHc
Q 040367 306 SLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRD 349 (400)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 349 (400)
+-+..+...++.|++......+++|.+.+++..|.++|+-.+.+
T Consensus 70 kglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 70 KGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 33444444556667777777777777777777777777666543
No 334
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=88.18 E-value=1.2 Score=22.14 Aligned_cols=23 Identities=26% Similarity=0.192 Sum_probs=12.5
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHH
Q 040367 361 FIDGLCKNSYIVEAVELFRTLRI 383 (400)
Q Consensus 361 l~~~~~~~g~~~~a~~~~~~~~~ 383 (400)
+..++.+.|++++|.+.|+++++
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 44445555555555555555554
No 335
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.09 E-value=22 Score=32.99 Aligned_cols=84 Identities=13% Similarity=0.099 Sum_probs=48.6
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHH-----HHhcCChhhHHHHHHHHHh-------cCCCCChhhHHHHHHHHHhc
Q 040367 33 YDTVLSLFKRLNSTGLFPDLYTYNILINC-----FCKMGRVSHGFVVLGRILR-------SCFTPNAVTFTSLIKGLCAE 100 (400)
Q Consensus 33 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 100 (400)
...|.++++.....| +......+..+ +....+.+.|...++.+.+ .+ .......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 456778887777765 33333333322 2345678888888887766 33 233445555555553
Q ss_pred C-----CHHHHHHHHHHHHHcCCCCCHH
Q 040367 101 S-----RIMEAAALFTKLRVFGCEPNVF 123 (400)
Q Consensus 101 ~-----~~~~a~~~~~~~~~~~~~~~~~ 123 (400)
. +.+.|..++.+.-+.| .|+..
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a~ 328 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-NPDAQ 328 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-CchHH
Confidence 2 4566777777766665 34443
No 336
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.05 E-value=1.5 Score=24.10 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=11.9
Q ss_pred HHHHHHhhCcHHHHHHHHHHHHH
Q 040367 326 LFVVLFEIHQVERAFKLFDEMQR 348 (400)
Q Consensus 326 l~~~~~~~~~~~~a~~~~~~~~~ 348 (400)
+..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34455555555555555555553
No 337
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=87.76 E-value=0.88 Score=21.53 Aligned_cols=21 Identities=24% Similarity=0.159 Sum_probs=11.4
Q ss_pred HHHHHHHHhcCcHHHHHHHHH
Q 040367 359 RTFIDGLCKNSYIVEAVELFR 379 (400)
Q Consensus 359 ~~l~~~~~~~g~~~~a~~~~~ 379 (400)
..+..++...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 344555555666666655543
No 338
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=87.39 E-value=20 Score=31.75 Aligned_cols=126 Identities=10% Similarity=-0.021 Sum_probs=85.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHH
Q 040367 188 RGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVN 267 (400)
Q Consensus 188 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 267 (400)
.--...|+...|-+-+....... +-++.........+...|+++.+.+.+...... +.....+..+++....+.|+++
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~~-~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~ 374 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRNQ-QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWR 374 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHhC-CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHH
Confidence 33445677777666555554431 223333333444567789999999988776654 3345667888899889999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 040367 268 RAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGI 316 (400)
Q Consensus 268 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 316 (400)
.|...-.-|....++ ++..........-..|-++++...|++....+.
T Consensus 375 ~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 375 EALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred HHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCC
Confidence 999998888876544 444444444445567788999999999887643
No 339
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=87.32 E-value=6.5 Score=27.49 Aligned_cols=60 Identities=8% Similarity=0.147 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcccchhHHHHHHhh
Q 040367 338 RAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTLRILKCELDIRAYNCLID 398 (400)
Q Consensus 338 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~ 398 (400)
+..+-++.+....+.|++.+...-+++|.+.+|+.-|.++|+-+..+ +.+....|..+++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHHH
Confidence 34555666777789999999999999999999999999999998753 3344445665553
No 340
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=87.24 E-value=4.8 Score=33.64 Aligned_cols=94 Identities=9% Similarity=-0.032 Sum_probs=55.7
Q ss_pred HHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCH
Q 040367 24 FGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRI 103 (400)
Q Consensus 24 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 103 (400)
...|.++|.+++|++.|....... +-|..++..-..+|.+.+++..|..=.+..+..+ ..-...|..-+.+-...|..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence 345677788888888887766652 2277777777777777777777766655555432 11222333333343445555
Q ss_pred HHHHHHHHHHHHcCCCCC
Q 040367 104 MEAAALFTKLRVFGCEPN 121 (400)
Q Consensus 104 ~~a~~~~~~~~~~~~~~~ 121 (400)
.+|.+-++..++. +|+
T Consensus 182 ~EAKkD~E~vL~L--EP~ 197 (536)
T KOG4648|consen 182 MEAKKDCETVLAL--EPK 197 (536)
T ss_pred HHHHHhHHHHHhh--Ccc
Confidence 6666666655544 444
No 341
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=87.09 E-value=5.2 Score=33.47 Aligned_cols=58 Identities=12% Similarity=0.056 Sum_probs=44.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 040367 256 LMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSK 314 (400)
Q Consensus 256 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 314 (400)
-.+-|.++|.+++|+.+|....... +.|+.++..-..+|.+...+..|..--..++..
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL 160 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL 160 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 4567888999999999998887764 448888888888898888888777655555543
No 342
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.05 E-value=9.7 Score=27.71 Aligned_cols=64 Identities=9% Similarity=-0.022 Sum_probs=40.3
Q ss_pred HhHHHHHHH---HHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 040367 251 FVYNTLMDG---FCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKG 315 (400)
Q Consensus 251 ~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 315 (400)
.+.+.|+.. -...++++++..++..+.-.. |.....-..-...+...|++++|..++++..+.+
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLr-P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVLR-PNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 344444443 335688888888888887653 2222222223344677888999999988888764
No 343
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=86.80 E-value=1.6 Score=21.72 Aligned_cols=21 Identities=19% Similarity=0.132 Sum_probs=9.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 040367 95 KGLCAESRIMEAAALFTKLRV 115 (400)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~~~~ 115 (400)
.++.+.|++++|.+.|+++.+
T Consensus 8 ~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 8 RCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHH
Confidence 334444444444444444443
No 344
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.78 E-value=33 Score=33.51 Aligned_cols=129 Identities=12% Similarity=0.106 Sum_probs=78.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHcCC--CCCCcccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHH
Q 040367 124 TYNTLINGLYRTGHTIVALNLFEEMASGN--GEFGVEGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKC 201 (400)
Q Consensus 124 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 201 (400)
-|..|+..|...|..++|++++....... .+......++..++++....... .+-...|..+ .-..+.+...+
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~-~~Li~~y~~w----vl~~~p~~gi~ 580 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAEN-LDLILEYADW----VLNKNPEAGIQ 580 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccc-hhHHHHHhhh----hhccCchhhee
Confidence 37889999999999999999999987755 22223334444444444443321 0122223222 23556777777
Q ss_pred HHHHH---HhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc
Q 040367 202 LLIEM---MDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLT 263 (400)
Q Consensus 202 ~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 263 (400)
+|..- ....+.++ .+-.|......+-+..+++.+....-.++....+.++..|...
T Consensus 581 Ift~~~~~~~~sis~~------~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~ 639 (877)
T KOG2063|consen 581 IFTSEDKQEAESISRD------DVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEK 639 (877)
T ss_pred eeeccChhhhccCCHH------HHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHH
Confidence 77661 11122222 1224566777888888888888776666777777777777643
No 345
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=86.54 E-value=15 Score=29.94 Aligned_cols=90 Identities=14% Similarity=0.149 Sum_probs=64.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh-
Q 040367 184 TSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCL- 262 (400)
Q Consensus 184 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 262 (400)
..=|.+++..++|.++....-+.-+.--+..+.+...-|-.|.+.+.+..+.++-....+....-+..-|..++..|..
T Consensus 87 vvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 87 VVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 3346788999999999888766654322334455666667789999999999998888775333334447777666554
Q ss_pred ----cCCHHHHHHHH
Q 040367 263 ----TGRVNRAKELF 273 (400)
Q Consensus 263 ----~~~~~~a~~~~ 273 (400)
.|.+++|+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 59999999877
No 346
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.17 E-value=15 Score=29.10 Aligned_cols=23 Identities=9% Similarity=0.281 Sum_probs=14.1
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCC
Q 040367 295 YCKNKEIEGALSLYGEMLSKGIK 317 (400)
Q Consensus 295 ~~~~~~~~~a~~~~~~~~~~~~~ 317 (400)
-...+++.+|+++|++.....+.
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 34556677777777766665443
No 347
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=85.72 E-value=26 Score=31.43 Aligned_cols=166 Identities=11% Similarity=0.105 Sum_probs=94.9
Q ss_pred CCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHH
Q 040367 177 NPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTL 256 (400)
Q Consensus 177 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 256 (400)
+.|.....+++..+..+..+.-...+..+|..-| .+...|..++.+|..+ ..++...+++++.+..+. |...-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 3455566667777777777777777777777654 4556677777777766 556666777777665332 33334444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCC-----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCchhhHHHHHHHH
Q 040367 257 MDGFCLTGRVNRAKELFVSMESMGCTH-----TVFSYSILINGYCKNKEIEGALSLYGEMLSK-GIKPDVVIYNTLFVVL 330 (400)
Q Consensus 257 ~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~ 330 (400)
+..|.+ ++.+.+...|..+...-++. -...|..|...- ..+.+....+..+.... |...-...+.-+-.-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 444443 66677777776665432221 112344444311 23555556555555543 3222334444455666
Q ss_pred HhhCcHHHHHHHHHHHHHc
Q 040367 331 FEIHQVERAFKLFDEMQRD 349 (400)
Q Consensus 331 ~~~~~~~~a~~~~~~~~~~ 349 (400)
....++++|++++....+.
T Consensus 216 s~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 216 SENENWTEAIRILKHILEH 234 (711)
T ss_pred ccccCHHHHHHHHHHHhhh
Confidence 6677777777777766654
No 348
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=85.71 E-value=22 Score=30.55 Aligned_cols=54 Identities=15% Similarity=0.101 Sum_probs=32.4
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040367 58 LINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKLRV 115 (400)
Q Consensus 58 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 115 (400)
...+..+.|+++...+........ .++...+.++... +.++++++....+....
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~ 57 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQ 57 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHH
Confidence 345667788888854544444322 2344444444433 77888888887777664
No 349
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=85.58 E-value=18 Score=29.51 Aligned_cols=126 Identities=11% Similarity=-0.018 Sum_probs=83.3
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHhCC-----C-CCC-------HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC
Q 040367 20 FNILFGCLAKNKHYDTVLSLFKRLNSTG-----L-FPD-------LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPN 86 (400)
Q Consensus 20 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~-~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 86 (400)
...-.+.+.-..||..|++..++-.+.= . .+. ......=|++++..+++.+++.+.-+..+.--+..
T Consensus 38 Le~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklP 117 (309)
T PF07163_consen 38 LEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLP 117 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCC
Confidence 3344455566789999999988765420 1 111 11233447889999999998887766655432334
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-----cCChHHHHHHH
Q 040367 87 AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYR-----TGHTIVALNLF 145 (400)
Q Consensus 87 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~ 145 (400)
..+...-|-.|.+.+++..+.++-..-....-.-+..-|.+++..|.. .|.+++|.++.
T Consensus 118 pkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 118 PKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 556666777789999999999888877765223344447777666654 58888887766
No 350
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.99 E-value=36 Score=32.32 Aligned_cols=167 Identities=13% Similarity=0.155 Sum_probs=95.7
Q ss_pred HHHHhccCChhHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 040367 24 FGCLAKNKHYDTVLSLFKRLNSTGLFP---DLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAE 100 (400)
Q Consensus 24 ~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 100 (400)
++.+.+.+.+++|++.-+..... .| -......+|..+...|++++|-...-.|... +..-|..-+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 56678888999999887655433 33 2345677888888999999998888888754 566677667666666
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCC-CCcccchHHHHHHHHHHHhCCCCCC
Q 040367 101 SRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGE-FGVEGFVDKAKELFLQMKDENINPD 179 (400)
Q Consensus 101 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~ 179 (400)
++......++ .......+...|..++..+.. .+... +++....-.+. +...-..+. .-.+..+. .-+
T Consensus 437 ~~l~~Ia~~l---Pt~~~rL~p~vYemvLve~L~-~~~~~---F~e~i~~Wp~~Lys~l~iisa---~~~q~~q~--Se~ 504 (846)
T KOG2066|consen 437 DQLTDIAPYL---PTGPPRLKPLVYEMVLVEFLA-SDVKG---FLELIKEWPGHLYSVLTIISA---TEPQIKQN--SES 504 (846)
T ss_pred cccchhhccC---CCCCcccCchHHHHHHHHHHH-HHHHH---HHHHHHhCChhhhhhhHHHhh---cchHHHhh--ccc
Confidence 6655443332 222112356677777777766 22211 11111111100 000000000 11111111 112
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040367 180 VVTYTSVIRGFCYANDWNEAKCLLIEMMD 208 (400)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 208 (400)
...-..|+..|...+++..|+..+-.+.+
T Consensus 505 ~~L~e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 505 TALLEVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred hhHHHHHHHHHHHccChHHHHHHHHhccC
Confidence 23344588899999999999998877654
No 351
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=84.98 E-value=33 Score=32.00 Aligned_cols=27 Identities=11% Similarity=0.096 Sum_probs=18.0
Q ss_pred hhhHHHHHHHHhccCChhHHHHHHHHHH
Q 040367 17 VCSFNILFGCLAKNKHYDTVLSLFKRLN 44 (400)
Q Consensus 17 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 44 (400)
+.-|+ .+..+.-.|.++.|.+++....
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~~s 175 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRLHS 175 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-TTT
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHhcc
Confidence 44555 6777788889999998884443
No 352
>PRK09687 putative lyase; Provisional
Probab=84.91 E-value=21 Score=29.62 Aligned_cols=200 Identities=10% Similarity=-0.018 Sum_probs=115.8
Q ss_pred ChHhHHHHHHHHHhcCCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCh-----HHHHHHHHHHHHcCCCCC
Q 040367 179 DVVTYTSVIRGFCYANDW----NEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKM-----DEASRLLDLMIQIGVRPN 249 (400)
Q Consensus 179 ~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~ 249 (400)
|...-...+.++.+.|+. .++...+..+... .++..+-...+.++...+.. ..+...+..... .++
T Consensus 67 d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~ 141 (280)
T PRK09687 67 NPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKS 141 (280)
T ss_pred CHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCC
Confidence 444555556666666653 4566667666433 35666666666666555421 223333333332 335
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCchhhHHHHHH
Q 040367 250 AFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNK-EIEGALSLYGEMLSKGIKPDVVIYNTLFV 328 (400)
Q Consensus 250 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 328 (400)
..+-...+.++.+.++ .++...+-.+.+ .++..+-...+.++.+.+ +.+.+...+..+.. .++..+-...+.
T Consensus 142 ~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~ 214 (280)
T PRK09687 142 TNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAII 214 (280)
T ss_pred HHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHH
Confidence 5566667777777776 456666666654 344445555555555543 23456666666664 346666677788
Q ss_pred HHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcccchhHHHHHHhhc
Q 040367 329 VLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTLRILKCELDIRAYNCLIDG 399 (400)
Q Consensus 329 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~ 399 (400)
++.+.|+ ..++..+-+..+.+ + .....+.++...|+. +|+..+..+.+. .||..+-...+.+
T Consensus 215 aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a 276 (280)
T PRK09687 215 GLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDK 276 (280)
T ss_pred HHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHH
Confidence 8888887 45666665555542 2 234677788888885 688888888753 3465554444443
No 353
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=84.61 E-value=30 Score=31.11 Aligned_cols=166 Identities=13% Similarity=0.136 Sum_probs=122.7
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 040367 212 QPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSIL 291 (400)
Q Consensus 212 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 291 (400)
+.|.....+++..+..+-...-...+..+|...| .+...+..++.+|... ..++-..+|+++.+..+ .|...-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHH
Confidence 4566677888999999988999999999999864 4677888999999887 66888999999998863 345555566
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCC-----chhhHHHHHHHHHhhCcHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHH
Q 040367 292 INGYCKNKEIEGALSLYGEMLSKGIKP-----DVVIYNTLFVVLFEIHQVERAFKLFDEMQRD-GVAADTWTYRTFIDGL 365 (400)
Q Consensus 292 ~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~ 365 (400)
+.-|.+ ++.+.+..+|.++...-++. -...|..+...- ..+.+....+....... |..--...+.-+..-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 666655 88899999999887652221 123455544322 46778888888777654 4444566677777889
Q ss_pred HhcCcHHHHHHHHHHHHHh
Q 040367 366 CKNSYIVEAVELFRTLRIL 384 (400)
Q Consensus 366 ~~~g~~~~a~~~~~~~~~~ 384 (400)
....++++|+++++.+++.
T Consensus 216 s~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 216 SENENWTEAIRILKHILEH 234 (711)
T ss_pred ccccCHHHHHHHHHHHhhh
Confidence 9999999999999977654
No 354
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=84.30 E-value=19 Score=28.48 Aligned_cols=66 Identities=12% Similarity=0.014 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHH
Q 040367 104 MEAAALFTKLRVFGCEP-----NVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFL 169 (400)
Q Consensus 104 ~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 169 (400)
..|.+.|.+..+..-.| +......+.....+.|+.++|.++|.++.............+.|.+.++
T Consensus 142 ~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR~~w~ 212 (214)
T PF09986_consen 142 RKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMARDQWQ 212 (214)
T ss_pred HHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHH
Confidence 45666666665543121 2344455667778889998888888888776655443334444544443
No 355
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=84.25 E-value=22 Score=29.30 Aligned_cols=57 Identities=16% Similarity=0.142 Sum_probs=31.8
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 040367 219 NVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSM 276 (400)
Q Consensus 219 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 276 (400)
....+.|..+|.+.+|.++.++.+..+ +.+...+..++..+...||--.+..-++.+
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 344455566666666666666665542 334555555666666666655555555444
No 356
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=83.75 E-value=32 Score=30.79 Aligned_cols=212 Identities=8% Similarity=0.076 Sum_probs=119.6
Q ss_pred hHHHHHHHHHHHhCC-CCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC-ChHH-HHH
Q 040367 161 VDKAKELFLQMKDEN-INP-DVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNG-KMDE-ASR 236 (400)
Q Consensus 161 ~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~-a~~ 236 (400)
+.....+++.....+ ..+ ....|..+.-.+...+...++. ..+...++..+...|..-+....+.. +.+- ...
T Consensus 337 I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a---~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~ 413 (568)
T KOG2396|consen 337 ILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVA---VKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEE 413 (568)
T ss_pred HHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHH---HHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHH
Confidence 444555555554332 222 2345555555555554433322 22222234456666666665555332 2222 222
Q ss_pred HHHHHHHcCCCCCHHhHHHHHHHHHhcCC-HHH--HHHHHHHHHhcCCCCChhh-HHHHHHHHHhcCCHHHHHHHHHHHH
Q 040367 237 LLDLMIQIGVRPNAFVYNTLMDGFCLTGR-VNR--AKELFVSMESMGCTHTVFS-YSILINGYCKNKEIEGALSLYGEML 312 (400)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~--a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~ 312 (400)
.+......-..+....+++.. .++ +.. -..++..+...+ .++..+ -+.++..+.+.|-..+|...+..+.
T Consensus 414 l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s~~-~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~ 487 (568)
T KOG2396|consen 414 LFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLSVI-GADSVTLKSKYLDWAYESGGYKKARKVYKSLQ 487 (568)
T ss_pred HHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHHhc-CCceeehhHHHHHHHHHhcchHHHHHHHHHHH
Confidence 333333321122222233222 233 222 122334444444 444444 4677888888999999999999998
Q ss_pred hCCCCCchhhHHHHHHHHH--hhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 040367 313 SKGIKPDVVIYNTLFVVLF--EIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTLRI 383 (400)
Q Consensus 313 ~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 383 (400)
.. ++|+...|..+++.-. ..-+...+.++++.|... +.-|+..|...+..-...|..+.+-.++.++++
T Consensus 488 ~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~-fg~d~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 488 EL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALRE-FGADSDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred hC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHH-hCCChHHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 86 5667777777775432 223378889999998865 236888888888877889999988888777764
No 357
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=83.70 E-value=73 Score=34.85 Aligned_cols=117 Identities=16% Similarity=0.103 Sum_probs=79.5
Q ss_pred HHHHHHhccCChhHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 040367 22 ILFGCLAKNKHYDTVLSLFKRLNSTGL--FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCA 99 (400)
Q Consensus 22 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 99 (400)
.+..+-.+.+.+.+|+..++.-..... ......|..+...|...++++....+...-.. .|+ .+ .-|.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s--l~-~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS--LY-QQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc--HH-HHHHHHHh
Confidence 455566778899999999998421111 11233455555699999999998888775221 222 22 23444567
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 040367 100 ESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLF 145 (400)
Q Consensus 100 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 145 (400)
.|++..|...|+.+...+ ++....++.++......|.+...+...
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~ 1506 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHL 1506 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhh
Confidence 899999999999999875 445778888888887888766555433
No 358
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=83.32 E-value=41 Score=31.76 Aligned_cols=198 Identities=17% Similarity=0.152 Sum_probs=109.0
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHh-cCCCCCh--hhHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCCHH--
Q 040367 50 PDLYTYNILINCFCKMGRVSHGFVVLGRILR-SCFTPNA--VTFTSLIKGLC-AESRIMEAAALFTKLRVFGCEPNVF-- 123 (400)
Q Consensus 50 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~--~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~-- 123 (400)
.+...|..+|.. |+..++.+.+ ..++|.. .++-.+...+. ...+++.|+..+++.....-.++..
T Consensus 28 ~~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~ 98 (608)
T PF10345_consen 28 EQLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDL 98 (608)
T ss_pred hhHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH
Confidence 355667777744 4556666663 3333332 34455555555 7889999999999775443222221
Q ss_pred ---HHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCCChHhHHHH-HHHHHhcCCHHHH
Q 040367 124 ---TYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENINPDVVTYTSV-IRGFCYANDWNEA 199 (400)
Q Consensus 124 ---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a 199 (400)
.-..++..+.+.+... |.+.+++..+. + ...+..+-...|..+ +..+...+++..|
T Consensus 99 k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~----------------~---~~~~~~~w~~~frll~~~l~~~~~d~~~A 158 (608)
T PF10345_consen 99 KFRCQFLLARIYFKTNPKA-ALKNLDKAIED----------------S---ETYGHSAWYYAFRLLKIQLALQHKDYNAA 158 (608)
T ss_pred HHHHHHHHHHHHHhcCHHH-HHHHHHHHHHH----------------H---hccCchhHHHHHHHHHHHHHHhcccHHHH
Confidence 2234556666666544 66665554321 1 112222233344444 3333344789999
Q ss_pred HHHHHHHHhCC---CCCCHHHHHHHHHHHH--hCCChHHHHHHHHHHHHcCC---------CCCHHhHHHHHHHH--Hhc
Q 040367 200 KCLLIEMMDQG---VQPNVVTFNVIMDELC--KNGKMDEASRLLDLMIQIGV---------RPNAFVYNTLMDGF--CLT 263 (400)
Q Consensus 200 ~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~---------~~~~~~~~~l~~~~--~~~ 263 (400)
.+.++.+...- ..|...++..++.+.. +.+..+++.+.++++..... .|...++..+++.+ ...
T Consensus 159 l~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~ 238 (608)
T PF10345_consen 159 LENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQ 238 (608)
T ss_pred HHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHc
Confidence 99988876432 2344445555555443 45666777777776643211 23445566666554 456
Q ss_pred CCHHHHHHHHHHH
Q 040367 264 GRVNRAKELFVSM 276 (400)
Q Consensus 264 ~~~~~a~~~~~~~ 276 (400)
|+++.+...++++
T Consensus 239 ~~~~~~~~~L~~l 251 (608)
T PF10345_consen 239 GDVKNSKQKLKQL 251 (608)
T ss_pred CCHHHHHHHHHHH
Confidence 7766777666665
No 359
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=82.33 E-value=30 Score=29.45 Aligned_cols=60 Identities=2% Similarity=-0.096 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 040367 233 EASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILING 294 (400)
Q Consensus 233 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 294 (400)
.-+.+++++++.+ +.+......++..+.+..+.++..+.++++.... +-+...|...+..
T Consensus 49 ~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~ 108 (321)
T PF08424_consen 49 RKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDF 108 (321)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHH
Confidence 3344555555542 2344444455555555555555555555555443 2244444444443
No 360
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.55 E-value=25 Score=27.98 Aligned_cols=61 Identities=7% Similarity=0.068 Sum_probs=29.2
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHHHhC--CCCCCHH---HHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 040367 185 SVIRGFCYA-NDWNEAKCLLIEMMDQ--GVQPNVV---TFNVIMDELCKNGKMDEASRLLDLMIQIG 245 (400)
Q Consensus 185 ~l~~~~~~~-~~~~~a~~~~~~~~~~--~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 245 (400)
.+...|-.. .++++|+..|++.-+- |-..+.. .+.-+...-...+++.+|.++|+++....
T Consensus 118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s 184 (288)
T KOG1586|consen 118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSS 184 (288)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444433 5566666666655431 1111111 22222333345566777777777766553
No 361
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=80.73 E-value=55 Score=31.42 Aligned_cols=189 Identities=9% Similarity=-0.028 Sum_probs=105.5
Q ss_pred ChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH---hcCChhhHHHHHHHHHhcCCCCChhhHHH
Q 040367 16 PVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFC---KMGRVSHGFVVLGRILRSCFTPNAVTFTS 92 (400)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 92 (400)
+...+..||..+.+.|++++...--..|.+.- +.++..|...+.... ..++..++..++++.+... .++..|.-
T Consensus 112 ~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~-pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy--~~v~iw~e 188 (881)
T KOG0128|consen 112 KYAQMVQLIGLLRKLGDLEKLRQARLEMSEIA-PLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDY--NSVPIWEE 188 (881)
T ss_pred chHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhccc--ccchHHHH
Confidence 56677888999999999998888777777653 556667766654433 3467778888888877653 34444444
Q ss_pred HHHHHH-------hcCCHHHHHHHHHHHHHc-CCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCc--
Q 040367 93 LIKGLC-------AESRIMEAAALFTKLRVF-GCEPN-----VFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGV-- 157 (400)
Q Consensus 93 l~~~~~-------~~~~~~~a~~~~~~~~~~-~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-- 157 (400)
.+..+. ..++++....+|.+.... |...+ ...|.-+-..|...-..++.+.++..-...+.+...
T Consensus 189 ~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~~D~~~~~ 268 (881)
T KOG0128|consen 189 VVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQPLDEDTRG 268 (881)
T ss_pred HHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccchhhhhH
Confidence 444333 345677777777776643 22111 122222223333344344555555544443311111
Q ss_pred ---------------ccchHHHHHH-------HHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040367 158 ---------------EGFVDKAKEL-------FLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMD 208 (400)
Q Consensus 158 ---------------~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 208 (400)
....+.+..- +....+. .++-...|..++..+...|++-.....++++..
T Consensus 269 ~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~-~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~ 340 (881)
T KOG0128|consen 269 WDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQK-EPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVA 340 (881)
T ss_pred HHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 1122222222 2222222 133445677778888888887666666666543
No 362
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=80.54 E-value=9.3 Score=24.20 Aligned_cols=46 Identities=7% Similarity=0.050 Sum_probs=23.4
Q ss_pred hhCcHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCcHHHHHHH
Q 040367 332 EIHQVERAFKLFDEMQRDGVAAD--TWTYRTFIDGLCKNSYIVEAVEL 377 (400)
Q Consensus 332 ~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~ 377 (400)
...+.++|+..++..++.-..+. ..++..++.+|+..|++.++++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666665555422211 23344555566666666555544
No 363
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=80.38 E-value=15 Score=33.42 Aligned_cols=96 Identities=7% Similarity=-0.069 Sum_probs=47.6
Q ss_pred HHHHHHHHhc-cCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 040367 20 FNILFGCLAK-NKHYDTVLSLFKRLNSTGLFPD-LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGL 97 (400)
Q Consensus 20 ~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 97 (400)
+..+..+|.+ .|+..+|+.......-...+-. .....++...+.+.|...+|--++..+...-... ..-+-.+.+.+
T Consensus 215 lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~-t~n~y~l~~i~ 293 (886)
T KOG4507|consen 215 LHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFF-TSNYYTLGNIY 293 (886)
T ss_pred HHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCccc-cccceeHHHHH
Confidence 3344444433 6778888777766544311111 1234455566667777777666665544331100 01123344555
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 040367 98 CAESRIMEAAALFTKLRVF 116 (400)
Q Consensus 98 ~~~~~~~~a~~~~~~~~~~ 116 (400)
+..+++......|+...+.
T Consensus 294 aml~~~N~S~~~ydha~k~ 312 (886)
T KOG4507|consen 294 AMLGEYNHSVLCYDHALQA 312 (886)
T ss_pred HHHhhhhhhhhhhhhhhcc
Confidence 5555555555555555444
No 364
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=80.11 E-value=4.3 Score=19.30 Aligned_cols=25 Identities=16% Similarity=0.071 Sum_probs=13.3
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHH
Q 040367 358 YRTFIDGLCKNSYIVEAVELFRTLR 382 (400)
Q Consensus 358 ~~~l~~~~~~~g~~~~a~~~~~~~~ 382 (400)
+..+...+...|++++|...++..+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3444455555555555555555554
No 365
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=79.94 E-value=11 Score=23.95 Aligned_cols=46 Identities=15% Similarity=0.190 Sum_probs=23.4
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCc--hhhHHHHHHHHHhhCcHHHHHHH
Q 040367 297 KNKEIEGALSLYGEMLSKGIKPD--VVIYNTLFVVLFEIHQVERAFKL 342 (400)
Q Consensus 297 ~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~ 342 (400)
...+.++|+..|+...+.-..+. -.++..++.+++..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666666555422211 12344555566666666555544
No 366
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=79.38 E-value=30 Score=27.58 Aligned_cols=43 Identities=12% Similarity=0.012 Sum_probs=27.1
Q ss_pred HHHhcCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCC
Q 040367 6 YMLNMRPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLF 49 (400)
Q Consensus 6 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 49 (400)
..+..|....|.+ +..++-.+...|+++.|+++.+.+.+.|.+
T Consensus 73 g~L~~g~~~qd~V-l~~~mvW~~D~Gd~~~AL~ia~yAI~~~l~ 115 (230)
T PHA02537 73 GVLAAGAGYQDDV-LMTVMVWRFDIGDFDGALEIAEYALEHGLT 115 (230)
T ss_pred HHHHcCCCCCCCe-eeEeeeeeeeccCHHHHHHHHHHHHHcCCC
Confidence 3444444334433 444555667888888888888888887743
No 367
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=79.32 E-value=8 Score=21.77 Aligned_cols=31 Identities=13% Similarity=0.187 Sum_probs=15.3
Q ss_pred hhCcHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 040367 332 EIHQVERAFKLFDEMQRDGVAADTWTYRTFI 362 (400)
Q Consensus 332 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 362 (400)
+.|-.+++..++++|.+.|+..+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4444555555555555555544444444433
No 368
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=79.28 E-value=58 Score=30.82 Aligned_cols=191 Identities=14% Similarity=0.059 Sum_probs=85.7
Q ss_pred HhcCCHHHHHHHHHHHHhCCC-CCC-----HHHHHHHHH--HHHhCCChHHHHHHHH--------HHHHcCCCCCHHhHH
Q 040367 191 CYANDWNEAKCLLIEMMDQGV-QPN-----VVTFNVIMD--ELCKNGKMDEASRLLD--------LMIQIGVRPNAFVYN 254 (400)
Q Consensus 191 ~~~~~~~~a~~~~~~~~~~~~-~~~-----~~~~~~l~~--~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~ 254 (400)
+-.+++..|...+..+..... .|+ ...+...+. .+-..|+.+.|...|. .....+...+..++.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 456778888888888775321 111 112222222 3344688888988887 344444444444433
Q ss_pred HH--HHHHH--hcCCHHH--HHHHHHHHHhc-CCCC--ChhhHHHH-HHHHHhcC--CHHHHHHHHHHHHhC---CCCCc
Q 040367 255 TL--MDGFC--LTGRVNR--AKELFVSMESM-GCTH--TVFSYSIL-INGYCKNK--EIEGALSLYGEMLSK---GIKPD 319 (400)
Q Consensus 255 ~l--~~~~~--~~~~~~~--a~~~~~~~~~~-~~~~--~~~~~~~l-~~~~~~~~--~~~~a~~~~~~~~~~---~~~~~ 319 (400)
.+ +..+. ...+..+ +..+++.+... .-.| +..++..+ +.++.... ...++...+.+..+. ....+
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~ 531 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNS 531 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccc
Confidence 21 11122 2222333 66666666542 1122 22233333 32332111 112444333322221 01111
Q ss_pred ---hhhHHHHHHHHHhhCcHHHHHHHHHHHHHcC-CCC--CHHHHH-----HHHHHHHhcCcHHHHHHHHHHHH
Q 040367 320 ---VVIYNTLFVVLFEIHQVERAFKLFDEMQRDG-VAA--DTWTYR-----TFIDGLCKNSYIVEAVELFRTLR 382 (400)
Q Consensus 320 ---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~-----~l~~~~~~~g~~~~a~~~~~~~~ 382 (400)
..+++.+...+. .|+..+..+......... ..| ....|. .+...+...|+.++|.....+..
T Consensus 532 ~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 532 QLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred hHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 112233333333 577666555554433211 112 233442 33444677789888888777664
No 369
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=78.75 E-value=32 Score=27.52 Aligned_cols=129 Identities=16% Similarity=0.109 Sum_probs=83.9
Q ss_pred HHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCCCh-HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHH
Q 040367 144 LFEEMASGNGEFGVEGFVDKAKELFLQMKDENINPDV-VTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVT-FNVI 221 (400)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l 221 (400)
.++++.+.+..+.....+..|+..|.+.+.. .|+. .-|..=+.++.+..+++.+..--...++. .|+..- ...+
T Consensus 9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~fl 84 (284)
T KOG4642|consen 9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFL 84 (284)
T ss_pred HHHHHHhccccccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHH
Confidence 4455556666666666777888877776665 4554 45666777888899999888877777764 455443 3344
Q ss_pred HHHHHhCCChHHHHHHHHHHHH----cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 040367 222 MDELCKNGKMDEASRLLDLMIQ----IGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSM 276 (400)
Q Consensus 222 ~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 276 (400)
..+......+++|+..+.+... +.+.+.......|..+=-..-...+..++.+..
T Consensus 85 g~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 85 GQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 4566677889999999888743 234445556666666655555555555555444
No 370
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=78.61 E-value=22 Score=25.50 Aligned_cols=48 Identities=6% Similarity=0.059 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 040367 336 VERAFKLFDEMQR-DGVAADTWTYRTFIDGLCKNSYIVEAVELFRTLRI 383 (400)
Q Consensus 336 ~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 383 (400)
..+.+.++++..+ ............|.-++.+.|++++++++++.+.+
T Consensus 51 v~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 51 VQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 3344445555443 11111223333344445555555555555555544
No 371
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.58 E-value=34 Score=27.82 Aligned_cols=200 Identities=11% Similarity=0.067 Sum_probs=122.7
Q ss_pred CCCChHhHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhCCChHHHHHHHHHHHHc---CC--
Q 040367 176 INPDVVTYTSVIRG-FCYANDWNEAKCLLIEMMDQGVQP---NVVTFNVIMDELCKNGKMDEASRLLDLMIQI---GV-- 246 (400)
Q Consensus 176 ~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~-- 246 (400)
-.||...-|..-.. -.+..++++|+.-|++..+..-.. .-.....++....+.+++++....+.+++.. .+
T Consensus 22 sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTr 101 (440)
T KOG1464|consen 22 SEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTR 101 (440)
T ss_pred CCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhc
Confidence 35555444333221 124457899999999887642111 2234566788899999999999888887542 11
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh----c-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----
Q 040367 247 RPNAFVYNTLMDGFCLTGRVNRAKELFVSMES----M-GCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIK---- 317 (400)
Q Consensus 247 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---- 317 (400)
.-+..+.+++++.-....+.+-...+|+.-.+ . +-..-..+-..|...|...+++.+..++++++...-..
T Consensus 102 NySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGe 181 (440)
T KOG1464|consen 102 NYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGE 181 (440)
T ss_pred cccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCc
Confidence 22455677777776666666555555544322 1 11122334467888899999999999999888764111
Q ss_pred Cc-------hhhHHHHHHHHHhhCcHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHH-----HhcCcHHHHHH
Q 040367 318 PD-------VVIYNTLFVVLFEIHQVERAFKLFDEMQRDG-VAADTWTYRTFIDGL-----CKNSYIVEAVE 376 (400)
Q Consensus 318 ~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~-----~~~g~~~~a~~ 376 (400)
.| ...|..-++.|....+-.....++++.+... -.|.+.. ...++.| .+.|++++|-.
T Consensus 182 dD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI-mGvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 182 DDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI-MGVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred hhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH-HhHHHHcCCccccccchHHHHHh
Confidence 11 2456666777877787777778888766432 2344443 3445554 45678877654
No 372
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=77.60 E-value=1.2e+02 Score=33.45 Aligned_cols=285 Identities=8% Similarity=0.008 Sum_probs=153.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCC------CCCcccchHH
Q 040367 92 SLIKGLCAESRIMEAAALFTKLRVFGC--EPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNG------EFGVEGFVDK 163 (400)
Q Consensus 92 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~~ 163 (400)
.+..+-.+++.+.+|...++.-..... ......+..+...|...++++....+.......+. .....|++..
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl~~qil~~e~~g~~~d 1467 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSLYQQILEHEASGNWAD 1467 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccHHHHHHHHHhhccHHH
Confidence 455566788899999999888311100 12334455556689999999888777764222211 1223778899
Q ss_pred HHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhCCChHHHHHHHH---
Q 040367 164 AKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVI-MDELCKNGKMDEASRLLD--- 239 (400)
Q Consensus 164 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~--- 239 (400)
|...|+.+.+.+ ++...+++.++......|.++.++...+-.... ..+....++.+ +.+--+.++++.....+.
T Consensus 1468 a~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~~~n 1545 (2382)
T KOG0890|consen 1468 AAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLSDRN 1545 (2382)
T ss_pred HHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhhccc
Confidence 999999998875 444667887777777788888777766555543 22333333332 333355666666555533
Q ss_pred -----------HHHHcCCCCCHHhH-HHH----------HHHHHhcCCHHHHHHHHHHHHh-----------cCCCCC--
Q 040367 240 -----------LMIQIGVRPNAFVY-NTL----------MDGFCLTGRVNRAKELFVSMES-----------MGCTHT-- 284 (400)
Q Consensus 240 -----------~~~~~~~~~~~~~~-~~l----------~~~~~~~~~~~~a~~~~~~~~~-----------~~~~~~-- 284 (400)
.+... ..-|...+ ..+ +.++...|.+..+.++.-++.. .+..++
T Consensus 1546 ~e~w~~~~~g~~ll~~-~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~~~ 1624 (2382)
T KOG0890|consen 1546 IEYWSVESIGKLLLRN-KKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIEELKKVSYDED 1624 (2382)
T ss_pred ccchhHHHHHHHHHhh-cccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhccCcccc
Confidence 00111 11121111 111 1112222222222222211100 011111
Q ss_pred ----hhhHHHHHHHHHhcCCHHHHHHHHHHHH----hCCCCC-----chhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCC
Q 040367 285 ----VFSYSILINGYCKNKEIEGALSLYGEML----SKGIKP-----DVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGV 351 (400)
Q Consensus 285 ----~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 351 (400)
...|..-+.. .+....+.+-.-.++ .....| -..+|-...+.....|+++.|...+-.+.+.+
T Consensus 1625 s~~~sd~W~~Rl~~---tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r- 1700 (2382)
T KOG0890|consen 1625 SANNSDNWKNRLER---TQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR- 1700 (2382)
T ss_pred ccccchhHHHHHHH---hchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-
Confidence 1112112211 111111222211111 111111 24577778888888999999998887777764
Q ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhc
Q 040367 352 AADTWTYRTFIDGLCKNSYIVEAVELFRTLRILK 385 (400)
Q Consensus 352 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 385 (400)
-+..+-..+.-....|+...|+.++++-.+..
T Consensus 1701 --~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1701 --LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred --cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 23455667778899999999999999988553
No 373
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=77.55 E-value=41 Score=28.07 Aligned_cols=23 Identities=17% Similarity=0.044 Sum_probs=12.7
Q ss_pred cHHHHHHHHHHHHHhcccchhHH
Q 040367 370 YIVEAVELFRTLRILKCELDIRA 392 (400)
Q Consensus 370 ~~~~a~~~~~~~~~~~~~p~~~~ 392 (400)
+...|...+......+.......
T Consensus 252 ~~~~a~~~~~~~~~~~~~~~~~~ 274 (292)
T COG0790 252 DKKQALEWLQKACELGFDNACEA 274 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHH
Confidence 55666666666665554444433
No 374
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=77.47 E-value=17 Score=28.14 Aligned_cols=32 Identities=22% Similarity=0.345 Sum_probs=15.4
Q ss_pred CCchhhHHHHHHHHHhhCcHHHHHHHHHHHHH
Q 040367 317 KPDVVIYNTLFVVLFEIHQVERAFKLFDEMQR 348 (400)
Q Consensus 317 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 348 (400)
.|++.+|..++.++...|+.++|.++.+++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444444444445555555444444444
No 375
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=77.24 E-value=25 Score=25.57 Aligned_cols=81 Identities=12% Similarity=0.228 Sum_probs=55.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCchhhHHHHHHHHHhhCc-HHHHHHHHHHHHHcCCCCCHHHHHHH
Q 040367 288 YSILINGYCKNKEIEGALSLYGEMLSKGI-----KPDVVIYNTLFVVLFEIHQ-VERAFKLFDEMQRDGVAADTWTYRTF 361 (400)
Q Consensus 288 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l 361 (400)
.+.++......++......+++.+..... ..+...|..++.+.....- .--+..+|.-+.+.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 46666666777788888887777743210 1245567888888766555 44567777778777778888888888
Q ss_pred HHHHHhc
Q 040367 362 IDGLCKN 368 (400)
Q Consensus 362 ~~~~~~~ 368 (400)
+.++.+-
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 8877655
No 376
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=77.08 E-value=36 Score=27.24 Aligned_cols=85 Identities=13% Similarity=0.020 Sum_probs=51.5
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCCH
Q 040367 224 ELCKNGKMDEASRLLDLMIQIGVRPNA-FVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHT-VFSYSILINGYCKNKEI 301 (400)
Q Consensus 224 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~ 301 (400)
.|.....++.|...+.+.+.. .|+. .-|..-+.++.+..+++.+..--.+..+. .|| +.....+..+......+
T Consensus 19 k~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred cccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccc
Confidence 345556677777777666664 4454 33444555666677777776666666554 233 33344455666667777
Q ss_pred HHHHHHHHHHH
Q 040367 302 EGALSLYGEML 312 (400)
Q Consensus 302 ~~a~~~~~~~~ 312 (400)
++|+..+++..
T Consensus 95 ~eaI~~Lqra~ 105 (284)
T KOG4642|consen 95 DEAIKVLQRAY 105 (284)
T ss_pred cHHHHHHHHHH
Confidence 77777777664
No 377
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=76.93 E-value=18 Score=23.55 Aligned_cols=66 Identities=17% Similarity=0.099 Sum_probs=39.1
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 040367 36 VLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAA 107 (400)
Q Consensus 36 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 107 (400)
+.++++.+.++|+- +......+-.+-...|+.+.|.+++..+. .| +..|...++++...|.-+-|.
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhhh
Confidence 45567777777643 44444444443345577777777777776 42 234566677776666654443
No 378
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=76.83 E-value=18 Score=32.92 Aligned_cols=86 Identities=19% Similarity=0.187 Sum_probs=39.4
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 040367 228 NGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSL 307 (400)
Q Consensus 228 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 307 (400)
.|+...|...+..+..............|.....+.|-...|-.++.+..... ...+.++..+.+++....+.+.|++.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHH
Confidence 34445555544444332111112222233444444445555555555444433 23344444555555555555555555
Q ss_pred HHHHHhC
Q 040367 308 YGEMLSK 314 (400)
Q Consensus 308 ~~~~~~~ 314 (400)
|+++.+.
T Consensus 699 ~~~a~~~ 705 (886)
T KOG4507|consen 699 FRQALKL 705 (886)
T ss_pred HHHHHhc
Confidence 5555554
No 379
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=76.30 E-value=58 Score=29.23 Aligned_cols=304 Identities=13% Similarity=0.019 Sum_probs=151.2
Q ss_pred HHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhH--HHHHHHHHhcCCCC-----------ChhhHH
Q 040367 25 GCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHG--FVVLGRILRSCFTP-----------NAVTFT 91 (400)
Q Consensus 25 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a--~~~~~~~~~~~~~~-----------~~~~~~ 91 (400)
..-..++.++..+++++.+...|.......++.-...|.+.|....- ++-++.+...-..| ....+.
T Consensus 25 ~~~f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~ll~el~aL~~~~~~~~~~~~gld~~~~t~~~y 104 (696)
T KOG2471|consen 25 HEQFNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVLLKELEALTADADAPGDVSSGLSLKQGTVMDY 104 (696)
T ss_pred HhccCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHHHHHHHHHHHhhccccchhcchhhhcchHHhh
Confidence 33455788999999999999888666666688888888888765542 22222222110011 111122
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-----HHHHHHHHHHhcCChHHHHHHHHHH---HcCCCCCCcccchHH
Q 040367 92 SLIKGLCAESRIMEAAALFTKLRVFGCEPNVF-----TYNTLINGLYRTGHTIVALNLFEEM---ASGNGEFGVEGFVDK 163 (400)
Q Consensus 92 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~ 163 (400)
...-.|.....+..|+++...+...- +|=.. .-......+....+.++|+.++.-+ ...... ...|....
T Consensus 105 n~aVi~yh~~~~g~a~~~~~~lv~r~-e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~-~~~gn~~~ 182 (696)
T KOG2471|consen 105 NFAVIFYHHEENGSAMQLSSNLVSRT-ESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRM-KLVGNHIP 182 (696)
T ss_pred hhheeeeeHhhcchHHHhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cccccccc
Confidence 22223344455666666655544321 11111 1112233444555666666554433 221100 00111111
Q ss_pred HHHHHHHHH----hCCC---CCChHhHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCCHHHHHHH-HHHHHhCCChHHH
Q 040367 164 AKELFLQMK----DENI---NPDVVTYTSVIRGFCYANDWNEAKCLLIEMM-DQGVQPNVVTFNVI-MDELCKNGKMDEA 234 (400)
Q Consensus 164 a~~~~~~~~----~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l-~~~~~~~~~~~~a 234 (400)
+-.+..... +++. .+......--+.++.+..+...+.+-.+... ..+ +...+..+ -..+.-.|++.+|
T Consensus 183 ~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~---~s~~~l~LKsq~eY~~gn~~kA 259 (696)
T KOG2471|consen 183 ANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQ---DSSMALLLKSQLEYAHGNHPKA 259 (696)
T ss_pred hhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcC---CCcHHHHHHHHHHHHhcchHHH
Confidence 111111110 0000 0000111112233333333333333332222 111 22222222 2345667899999
Q ss_pred HHHHHHHHH---cCCCCCH-----HhHHHHHHHHHhcCCHHHHHHHHHHHHh-------cCCCCCh----------hhHH
Q 040367 235 SRLLDLMIQ---IGVRPNA-----FVYNTLMDGFCLTGRVNRAKELFVSMES-------MGCTHTV----------FSYS 289 (400)
Q Consensus 235 ~~~~~~~~~---~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~----------~~~~ 289 (400)
.+.+...-- .|...++ ..+|.+.....+.|.+..+..+|....+ .|..|.. ....
T Consensus 260 ~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilY 339 (696)
T KOG2471|consen 260 MKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILY 339 (696)
T ss_pred HHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHH
Confidence 888865422 2322232 1235566667788899999999988764 3433321 1112
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhC
Q 040367 290 ILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIH 334 (400)
Q Consensus 290 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 334 (400)
...-.|...|++-.|.+.|.+.... +..++..|-.+..+|....
T Consensus 340 NcG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima~ 383 (696)
T KOG2471|consen 340 NCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMAL 383 (696)
T ss_pred hhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHHh
Confidence 2344677889999999999988875 4568899999999887543
No 380
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=76.25 E-value=25 Score=24.95 Aligned_cols=43 Identities=16% Similarity=0.264 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 040367 338 RAFKLFDEMQRDGVAA-DTWTYRTFIDGLCKNSYIVEAVELFRT 380 (400)
Q Consensus 338 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 380 (400)
.+.++|+.|...|+.- -+..|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 7888888888776643 466777788888888888888888765
No 381
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=75.00 E-value=12 Score=22.55 Aligned_cols=24 Identities=17% Similarity=0.321 Sum_probs=11.9
Q ss_pred HHHHHHHhhCcHHHHHHHHHHHHH
Q 040367 325 TLFVVLFEIHQVERAFKLFDEMQR 348 (400)
Q Consensus 325 ~l~~~~~~~~~~~~a~~~~~~~~~ 348 (400)
.++.++...|++++|.++++++.+
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344555555555555555555443
No 382
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=74.78 E-value=11 Score=31.19 Aligned_cols=38 Identities=13% Similarity=0.152 Sum_probs=20.7
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHhcccchhHHHHH
Q 040367 358 YRTFIDGLCKNSYIVEAVELFRTLRILKCELDIRAYNC 395 (400)
Q Consensus 358 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 395 (400)
|+..|....+.||+++|+.++++..+.|+.--..+|-.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 34555555555666666666666655555544444433
No 383
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=74.65 E-value=14 Score=22.22 Aligned_cols=47 Identities=26% Similarity=0.239 Sum_probs=31.8
Q ss_pred cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 040367 335 QVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTLRI 383 (400)
Q Consensus 335 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 383 (400)
..+...++++.+... .-|..-.-.++.++...|++++|.++++.+..
T Consensus 5 ~~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 5 QLEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp -HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344555555555432 22455556789999999999999999999874
No 384
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=74.49 E-value=48 Score=27.43 Aligned_cols=134 Identities=13% Similarity=0.124 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHHH-cCCCCCHHhHHHHHHHHHh-cCC-HHHHHHHHHHHHh-cCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 040367 231 MDEASRLLDLMIQ-IGVRPNAFVYNTLMDGFCL-TGR-VNRAKELFVSMES-MGCTHTVFSYSILINGYCKNKEIEGALS 306 (400)
Q Consensus 231 ~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~~~-~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 306 (400)
..+|+++|+.... ..+-.|..+...+++.... .+. ...-.++.+-+.. .+..++..+...++..++..+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 3455555552111 1233466666667766655 222 2222222222222 2236677777888888888888888888
Q ss_pred HHHHHHhC-CCCCchhhHHHHHHHHHhhCcHHHHHHHHHH-----HHHcCCCCCHHHHHHHHHH
Q 040367 307 LYGEMLSK-GIKPDVVIYNTLFVVLFEIHQVERAFKLFDE-----MQRDGVAADTWTYRTFIDG 364 (400)
Q Consensus 307 ~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~l~~~ 364 (400)
+|...... +...|...|..++......|+..-..++.++ +.+.++..+...-..+-..
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~L 287 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSEL 287 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHH
Confidence 88877665 5666788888888888888888777777665 2234555555544444333
No 385
>PHA02875 ankyrin repeat protein; Provisional
Probab=74.44 E-value=62 Score=28.69 Aligned_cols=15 Identities=20% Similarity=0.479 Sum_probs=6.9
Q ss_pred HHHhCCChHHHHHHH
Q 040367 224 ELCKNGKMDEASRLL 238 (400)
Q Consensus 224 ~~~~~~~~~~a~~~~ 238 (400)
.....|+.+.+..++
T Consensus 74 ~A~~~g~~~~v~~Ll 88 (413)
T PHA02875 74 DAVEEGDVKAVEELL 88 (413)
T ss_pred HHHHCCCHHHHHHHH
Confidence 344455555444333
No 386
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=74.21 E-value=6.6 Score=32.34 Aligned_cols=30 Identities=23% Similarity=0.254 Sum_probs=17.1
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHhCCCC
Q 040367 20 FNILFGCLAKNKHYDTVLSLFKRLNSTGLF 49 (400)
Q Consensus 20 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 49 (400)
|+.-|....+.||+++|+.++++..+.|+.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 445555555556666666666665555544
No 387
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=73.26 E-value=24 Score=25.82 Aligned_cols=47 Identities=15% Similarity=0.100 Sum_probs=21.5
Q ss_pred HHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhh
Q 040367 275 SMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVI 322 (400)
Q Consensus 275 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 322 (400)
.+.+.|.+++.. -..++..+.+.++.-.|.++++++.+.++..+..|
T Consensus 11 ~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaT 57 (145)
T COG0735 11 RLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLAT 57 (145)
T ss_pred HHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhH
Confidence 334444443332 23344444445444555555555555544443333
No 388
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=72.88 E-value=24 Score=23.31 Aligned_cols=21 Identities=38% Similarity=0.303 Sum_probs=11.6
Q ss_pred HHHHHHhcCChHHHHHHHHHH
Q 040367 128 LINGLYRTGHTIVALNLFEEM 148 (400)
Q Consensus 128 l~~~~~~~~~~~~a~~~~~~~ 148 (400)
+.......|++++|...+++.
T Consensus 47 lA~~~~~~G~~~~A~~~l~eA 67 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEA 67 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHH
Confidence 444555566666666664443
No 389
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=72.37 E-value=3.7 Score=34.31 Aligned_cols=96 Identities=13% Similarity=0.004 Sum_probs=65.6
Q ss_pred HhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHH
Q 040367 27 LAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEA 106 (400)
Q Consensus 27 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 106 (400)
....|.++.|++.|...+..+ ++....|..-.+++.+.+++..|++=+...+..+.. +..-|-.--.+....|++++|
T Consensus 124 Aln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred HhcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhhchHHH
Confidence 345677888888888888775 556777777778888888888888888777765321 222333334444556888888
Q ss_pred HHHHHHHHHcCCCCCHHH
Q 040367 107 AALFTKLRVFGCEPNVFT 124 (400)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~ 124 (400)
...+....+.+..+....
T Consensus 202 a~dl~~a~kld~dE~~~a 219 (377)
T KOG1308|consen 202 AHDLALACKLDYDEANSA 219 (377)
T ss_pred HHHHHHHHhccccHHHHH
Confidence 888888877765554443
No 390
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=71.87 E-value=69 Score=28.10 Aligned_cols=57 Identities=14% Similarity=0.099 Sum_probs=42.5
Q ss_pred HHHHhccCChhHHHHHHHHHHhCCCCCCHH--HHHHHHHHHH--hcCChhhHHHHHHHHHhc
Q 040367 24 FGCLAKNKHYDTVLSLFKRLNSTGLFPDLY--TYNILINCFC--KMGRVSHGFVVLGRILRS 81 (400)
Q Consensus 24 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 81 (400)
+..+.+.+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 44556889999999999999987 565554 4555656655 456788899999987765
No 391
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=71.79 E-value=36 Score=24.81 Aligned_cols=95 Identities=17% Similarity=0.136 Sum_probs=67.4
Q ss_pred HHhCCCCCCHH--HHHHHHHHHHhcCChhhHHHHHHHHHhcCC-----CCChhhHHHHHHHHHhcCC-HHHHHHHHHHHH
Q 040367 43 LNSTGLFPDLY--TYNILINCFCKMGRVSHGFVVLGRILRSCF-----TPNAVTFTSLIKGLCAESR-IMEAAALFTKLR 114 (400)
Q Consensus 43 ~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~ 114 (400)
|.+.+..++.. ..+.++.-....+++.....+++.+..... ..+...|+.++.+...... --.+..+|.-+.
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk 107 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLK 107 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 44444444443 457777777778888888888887743311 2456678999988866655 345678888888
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCC
Q 040367 115 VFGCEPNVFTYNTLINGLYRTGH 137 (400)
Q Consensus 115 ~~~~~~~~~~~~~l~~~~~~~~~ 137 (400)
+.+.++++.-|..++.++.+...
T Consensus 108 ~~~~~~t~~dy~~li~~~l~g~~ 130 (145)
T PF13762_consen 108 KNDIEFTPSDYSCLIKAALRGYF 130 (145)
T ss_pred HcCCCCCHHHHHHHHHHHHcCCC
Confidence 87889999999999999877643
No 392
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=71.72 E-value=28 Score=23.42 Aligned_cols=88 Identities=11% Similarity=0.117 Sum_probs=55.3
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 040367 31 KHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALF 110 (400)
Q Consensus 31 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 110 (400)
...++|..+-+.+...+-. ....--.-+..+...|++++|..+.+.. ..||...|.+|-.. +.|..+.+..-+
T Consensus 19 HcHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~--rlGl~s~l~~rl 91 (115)
T TIGR02508 19 HCHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCEW--RLGLGSALESRL 91 (115)
T ss_pred hHHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHHH--hhccHHHHHHHH
Confidence 3467777777777665311 1222222245667888898888877665 36788877766543 667777777777
Q ss_pred HHHHHcCCCCCHHHHH
Q 040367 111 TKLRVFGCEPNVFTYN 126 (400)
Q Consensus 111 ~~~~~~~~~~~~~~~~ 126 (400)
.++-..| .|....|.
T Consensus 92 ~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 92 NRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHhCC-CHHHHHHH
Confidence 7777666 55554443
No 393
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=71.48 E-value=26 Score=23.04 Aligned_cols=52 Identities=13% Similarity=0.053 Sum_probs=24.7
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCC
Q 040367 51 DLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTP-NAVTFTSLIKGLCAESR 102 (400)
Q Consensus 51 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 102 (400)
|...-..+...+...|+++.|++.+-.+++..... +...-..++..+...|.
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 44555555556666666666666665555543222 23333445555544444
No 394
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=71.26 E-value=26 Score=23.01 Aligned_cols=55 Identities=13% Similarity=0.192 Sum_probs=32.1
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHh
Q 040367 119 EPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKD 173 (400)
Q Consensus 119 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 173 (400)
+.|......+...+...|+++.|++.+-.+...+..+...+--...+++|+.+..
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 4466666777777777777777777777777666555444444445555555543
No 395
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=70.97 E-value=29 Score=23.34 Aligned_cols=49 Identities=10% Similarity=0.029 Sum_probs=21.0
Q ss_pred HHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Q 040367 330 LFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTLRIL 384 (400)
Q Consensus 330 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 384 (400)
+...|+|++|..+.+.. ..||...|..|. -.+.|..++...-+-+|...
T Consensus 49 LmNrG~Yq~Al~l~~~~----~~pdlepw~ALc--e~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 49 LMNRGDYQSALQLGNKL----CYPDLEPWLALC--EWRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHccchHHHHHHhcCCC----CCchHHHHHHHH--HHhhccHHHHHHHHHHHHhC
Confidence 34445555555444433 234444444332 23444444444444444433
No 396
>PRK09857 putative transposase; Provisional
Probab=70.95 E-value=62 Score=27.14 Aligned_cols=57 Identities=11% Similarity=0.070 Sum_probs=26.2
Q ss_pred hhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcccch
Q 040367 332 EIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTLRILKCELD 389 (400)
Q Consensus 332 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 389 (400)
..++.++..++++.+.+. .+.......++..-+...|.-++++++.++|+..|+.++
T Consensus 218 ~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 218 QTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred hccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 344444444444444333 222223333444444444554555666666666555544
No 397
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=70.85 E-value=16 Score=20.49 Aligned_cols=35 Identities=14% Similarity=0.154 Sum_probs=22.3
Q ss_pred HHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 040367 26 CLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILIN 60 (400)
Q Consensus 26 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 60 (400)
...+.|-..++..++++|.+.|+.-+...+..++.
T Consensus 11 ~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 11 LAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 34456666677777777777776666666655553
No 398
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=70.54 E-value=28 Score=26.93 Aligned_cols=32 Identities=9% Similarity=-0.103 Sum_probs=16.1
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040367 282 THTVFSYSILINGYCKNKEIEGALSLYGEMLS 313 (400)
Q Consensus 282 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 313 (400)
.|++.+|..++.++...|+.++|.+..+++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555555555555555555555555544444
No 399
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=70.34 E-value=1e+02 Score=29.48 Aligned_cols=193 Identities=19% Similarity=0.239 Sum_probs=100.7
Q ss_pred hhHHHHhcCCCCCCh---hhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHH----------HHHHHHHHHhcCChh
Q 040367 3 IFDYMLNMRPSPPPV---CSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYT----------YNILINCFCKMGRVS 69 (400)
Q Consensus 3 ~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----------~~~l~~~~~~~~~~~ 69 (400)
.+++|..+-.. |++ .+...++-.|....+++..+++.+.+... ||..- |.-.++---+-|+.+
T Consensus 185 ~L~~mR~RlDn-p~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRa 260 (1226)
T KOG4279|consen 185 YLDKMRTRLDN-PDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRA 260 (1226)
T ss_pred HHHHHHhhcCC-ccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHH
Confidence 45667766655 443 34555666777778888899998888764 33211 222222222457778
Q ss_pred hHHHHHHHHHhcC--CCCChhh-----HHHHH--HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-hH
Q 040367 70 HGFVVLGRILRSC--FTPNAVT-----FTSLI--KGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGH-TI 139 (400)
Q Consensus 70 ~a~~~~~~~~~~~--~~~~~~~-----~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~ 139 (400)
+|+...-.+.+.. +.||... |.-+. +.|...+..+.|.++|++.-+. +|+..+=..+...+...|+ ++
T Consensus 261 kAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFev--eP~~~sGIN~atLL~aaG~~Fe 338 (1226)
T KOG4279|consen 261 KALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEV--EPLEYSGINLATLLRAAGEHFE 338 (1226)
T ss_pred HHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhcc--CchhhccccHHHHHHHhhhhcc
Confidence 8888777776652 3344432 22111 2334456677888888887755 6666554334433333332 22
Q ss_pred HHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 040367 140 VALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNV 215 (400)
Q Consensus 140 ~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 215 (400)
..+++-.-....+.-....|..+....++ |.. ..+.+-.-.+++.+|+..-+.|.+.. +|..
T Consensus 339 ns~Elq~IgmkLn~LlgrKG~leklq~YW----------dV~---~y~~asVLAnd~~kaiqAae~mfKLk-~P~W 400 (1226)
T KOG4279|consen 339 NSLELQQIGMKLNSLLGRKGALEKLQEYW----------DVA---TYFEASVLANDYQKAIQAAEMMFKLK-PPVW 400 (1226)
T ss_pred chHHHHHHHHHHHHHhhccchHHHHHHHH----------hHH---HhhhhhhhccCHHHHHHHHHHHhccC-Ccee
Confidence 22222111111111122222233322222 122 23344556788888888888887764 4443
No 400
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=70.08 E-value=9.9 Score=31.93 Aligned_cols=93 Identities=15% Similarity=0.053 Sum_probs=51.8
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHH
Q 040367 225 LCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGA 304 (400)
Q Consensus 225 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 304 (400)
....|.++.|++.+...++.+ ++....|..-..++.+.+.+..|++-+......+ +-+...|-.-..+....|++++|
T Consensus 124 Aln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein-~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN-PDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred HhcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccC-cccccccchhhHHHHHhhchHHH
Confidence 344566666666666666653 3344455555566666666666666666665543 22223333334444456666666
Q ss_pred HHHHHHHHhCCCCCc
Q 040367 305 LSLYGEMLSKGIKPD 319 (400)
Q Consensus 305 ~~~~~~~~~~~~~~~ 319 (400)
...+....+.++.+.
T Consensus 202 a~dl~~a~kld~dE~ 216 (377)
T KOG1308|consen 202 AHDLALACKLDYDEA 216 (377)
T ss_pred HHHHHHHHhccccHH
Confidence 666666666655443
No 401
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=70.06 E-value=5.9 Score=28.07 Aligned_cols=31 Identities=19% Similarity=0.345 Sum_probs=22.1
Q ss_pred ccchHHHHHHHHHHHhCCCCCChHhHHHHHHHH
Q 040367 158 EGFVDKAKELFLQMKDENINPDVVTYTSVIRGF 190 (400)
Q Consensus 158 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 190 (400)
.|.-..|..+|+.|.+.|-+|| .|+.|+..+
T Consensus 108 ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 4445667788888888887777 677777654
No 402
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=69.64 E-value=52 Score=27.56 Aligned_cols=51 Identities=16% Similarity=0.219 Sum_probs=31.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 040367 92 SLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEM 148 (400)
Q Consensus 92 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 148 (400)
.++....+.++.....+.++.+. ....-...+..+...|++..|++++.+.
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~ 153 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEEC 153 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34455555555555555555554 3334445667777888888888887665
No 403
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=69.38 E-value=48 Score=25.28 Aligned_cols=64 Identities=9% Similarity=0.165 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHhCCCCCC--hHh-----HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 040367 161 VDKAKELFLQMKDENINPD--VVT-----YTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCK 227 (400)
Q Consensus 161 ~~~a~~~~~~~~~~~~~~~--~~~-----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 227 (400)
.+.|+.+++.+.+.-..|. ... --..+-.|.+.|.+++|.++++..... |+......-+....+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II~ 155 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMIIR 155 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHHH
Confidence 6778888877776542221 111 122344688888888888888888763 344444444433333
No 404
>PRK09687 putative lyase; Provisional
Probab=68.87 E-value=67 Score=26.73 Aligned_cols=136 Identities=19% Similarity=0.105 Sum_probs=69.9
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 040367 214 NVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTG-RVNRAKELFVSMESMGCTHTVFSYSILI 292 (400)
Q Consensus 214 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 292 (400)
+..+-...+.++.+.++ +.+...+-.+.+. ++..+-...+.++.+.+ +...+...+..+.. .++..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 44555555556655554 3455555555542 33444444444444432 13345555544443 34555556666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 040367 293 NGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGL 365 (400)
Q Consensus 293 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 365 (400)
.++.+.++ ..+...+-+..+.+ + .....+.++...|.. +|+..+..+.+. .||..+-...+.+|
T Consensus 214 ~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 214 IGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred HHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 66666666 34555544444432 1 123455666666764 566666666653 34555555544444
No 405
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=68.24 E-value=13 Score=32.85 Aligned_cols=108 Identities=11% Similarity=0.047 Sum_probs=74.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhC
Q 040367 256 LMDGFCLTGRVNRAKELFVSMESMGCTHT-VFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIH 334 (400)
Q Consensus 256 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 334 (400)
-+.-+...++++.|..++.++.+.. || ...|..=..++.+.+++..|+.=...+++..+. ....|-.=..++...+
T Consensus 10 ean~~l~~~~fd~avdlysKaI~ld--pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIELD--PNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMALG 86 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhcC--CcceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHhHH
Confidence 3455667789999999999999874 54 444444447888999999999888888876421 1223333345566677
Q ss_pred cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 040367 335 QVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKN 368 (400)
Q Consensus 335 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 368 (400)
.+.+|...|+.... +.|+..-....+.-|-+.
T Consensus 87 ~~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~~~ 118 (476)
T KOG0376|consen 87 EFKKALLDLEKVKK--LAPNDPDATRKIDECNKI 118 (476)
T ss_pred HHHHHHHHHHHhhh--cCcCcHHHHHHHHHHHHH
Confidence 77788887777766 477777777777766544
No 406
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=68.04 E-value=1.3e+02 Score=30.85 Aligned_cols=164 Identities=12% Similarity=0.061 Sum_probs=95.6
Q ss_pred HHHHhccCChhHHHH------HHHH-HHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHH-------HhcCCCCChhh
Q 040367 24 FGCLAKNKHYDTVLS------LFKR-LNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI-------LRSCFTPNAVT 89 (400)
Q Consensus 24 ~~~~~~~~~~~~a~~------~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~~~~~~~~ 89 (400)
.......|.+.++.+ ++.. |... .++....|..+...+-+.++.++|+..-... ...+..-+...
T Consensus 939 gq~~~~e~~~~~~~~~~~slnl~~~v~~~~-h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~ 1017 (1236)
T KOG1839|consen 939 GQEALLEDGFSEAYELPESLNLLNNVMGVL-HPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLA 1017 (1236)
T ss_pred hhhhhcccchhhhhhhhhhhhHHHHhhhhc-chhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHH
Confidence 334555666666666 6663 3333 2456678888888999999999988765443 22222223344
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc-----C--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchH
Q 040367 90 FTSLIKGLCAESRIMEAAALFTKLRVF-----G--CEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVD 162 (400)
Q Consensus 90 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 162 (400)
|..+............|...+.+.+.. | -||...+++.+-..+...++++.|+++++.+..
T Consensus 1018 y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a------------ 1085 (1236)
T KOG1839|consen 1018 YGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALA------------ 1085 (1236)
T ss_pred hhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHH------------
Confidence 555555555666777777777666543 2 244455556555556666888888887665533
Q ss_pred HHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHH
Q 040367 163 KAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLI 204 (400)
Q Consensus 163 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 204 (400)
.-+......--.+..++..+.+.+...+++..|....+
T Consensus 1086 ----~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek 1123 (1236)
T KOG1839|consen 1086 ----KNKKVLGPKELETALSYHALARLFESMKDFRNALEHEK 1123 (1236)
T ss_pred ----HHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHh
Confidence 22222111112345566777776766666666554443
No 407
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=67.77 E-value=33 Score=22.71 Aligned_cols=19 Identities=11% Similarity=-0.108 Sum_probs=9.5
Q ss_pred HHHhcCcHHHHHHHHHHHH
Q 040367 364 GLCKNSYIVEAVELFRTLR 382 (400)
Q Consensus 364 ~~~~~g~~~~a~~~~~~~~ 382 (400)
.....|++++|...+++.+
T Consensus 50 ~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 50 LHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHhCCHHHHHHHHHHHH
Confidence 3344455555555555543
No 408
>PRK13342 recombination factor protein RarA; Reviewed
Probab=67.66 E-value=91 Score=27.79 Aligned_cols=118 Identities=18% Similarity=0.140 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHc---CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCC
Q 040367 103 IMEAAALFTKLRVF---GC-EPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENINP 178 (400)
Q Consensus 103 ~~~a~~~~~~~~~~---~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 178 (400)
.++...+++..... |+ ..+......++... .|+...++..++.+...+.. =..+...+++...... ...
T Consensus 153 ~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~----It~~~v~~~~~~~~~~-~d~ 225 (413)
T PRK13342 153 EEDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDS----ITLELLEEALQKRAAR-YDK 225 (413)
T ss_pred HHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCC----CCHHHHHHHHhhhhhc-cCC
Confidence 34555555554332 33 44555555554432 67777777777766443110 0122333333322111 111
Q ss_pred ChHhHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 040367 179 DVVTYTSVIRGFCY---ANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCK 227 (400)
Q Consensus 179 ~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 227 (400)
+......+++++.+ .++.+.|+.++..|.+.|..|....-..+..++..
T Consensus 226 ~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ed 277 (413)
T PRK13342 226 DGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASED 277 (413)
T ss_pred CccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 11223334444433 46777777777777777655554444444434333
No 409
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=67.65 E-value=96 Score=28.04 Aligned_cols=215 Identities=12% Similarity=0.110 Sum_probs=113.9
Q ss_pred HHHHHHHHhCCCCCChHhHHHHHHHHHhcC------CHHHHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhCCCh-HHHH
Q 040367 165 KELFLQMKDENINPDVVTYTSVIRGFCYAN------DWNEAKCLLIEMMDQG-VQP-NVVTFNVIMDELCKNGKM-DEAS 235 (400)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~-~~a~ 235 (400)
..+|+..... -|+...|+..|..|...- .......+++...+.+ ..+ ....|..+...+...... ..|.
T Consensus 302 ~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~ 379 (568)
T KOG2396|consen 302 CAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAV 379 (568)
T ss_pred HHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHH
Confidence 3444444443 345556666666664432 3455566666665432 222 344566665555555443 3333
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHhc-CCHHHHH-HHHHHHHhcCCCCChhhHHHHHHHHHhcCC-HHHH--HHHHHH
Q 040367 236 RLLDLMIQIGVRPNAFVYNTLMDGFCLT-GRVNRAK-ELFVSMESMGCTHTVFSYSILINGYCKNKE-IEGA--LSLYGE 310 (400)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a--~~~~~~ 310 (400)
.+.... +..+...+-.-+...... .+++--. ..+..+...-..+....|+... .|+ ++.. ..++..
T Consensus 380 ~l~~e~----f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a 450 (568)
T KOG2396|consen 380 KLTTEL----FRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISA 450 (568)
T ss_pred HhhHHH----hcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHH
Confidence 333333 344555555544444422 2322222 2233333322223333343333 233 3222 223344
Q ss_pred HHhCCCCCchhhH-HHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--cCcHHHHHHHHHHHH-Hhcc
Q 040367 311 MLSKGIKPDVVIY-NTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCK--NSYIVEAVELFRTLR-ILKC 386 (400)
Q Consensus 311 ~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~-~~~~ 386 (400)
+...+ .|+..++ +.++..+.+.|-+.+|...+..+... .+|+...|..++..-.. +-+..-+.++|+.|. ..|
T Consensus 451 ~~s~~-~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg- 527 (568)
T KOG2396|consen 451 LLSVI-GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG- 527 (568)
T ss_pred HHHhc-CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC-
Confidence 44443 4455544 66788888999999999999999887 56778888877764321 223777888888886 555
Q ss_pred cchhHHHH
Q 040367 387 ELDIRAYN 394 (400)
Q Consensus 387 ~p~~~~~~ 394 (400)
-|...|.
T Consensus 528 -~d~~lw~ 534 (568)
T KOG2396|consen 528 -ADSDLWM 534 (568)
T ss_pred -CChHHHH
Confidence 4444554
No 410
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=67.01 E-value=90 Score=31.85 Aligned_cols=160 Identities=16% Similarity=0.073 Sum_probs=89.7
Q ss_pred HHhcCCHHHHHH------HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHH
Q 040367 97 LCAESRIMEAAA------LFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQ 170 (400)
Q Consensus 97 ~~~~~~~~~a~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 170 (400)
....|.+.++.+ ++...-..--++....|..+...+.+.|+.++|+..-... .-+.++
T Consensus 942 ~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka----------------~ii~eR 1005 (1236)
T KOG1839|consen 942 ALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKA----------------CIISER 1005 (1236)
T ss_pred hhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccc----------------eeeech
Confidence 344455555555 4442221111456677888888888888887777664332 222222
Q ss_pred HHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 040367 171 MKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQ-------GVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQ 243 (400)
Q Consensus 171 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 243 (400)
+...+.+-+...|..+...+...++...|...+...... ..+|...+++.+-..+...++++.|.+.++.+..
T Consensus 1006 ~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1006 VLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred hccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 323332334455666655666666777777777666532 1244445555555555556788888888887765
Q ss_pred c-----CC--CCCHHhHHHHHHHHHhcCCHHHHHHH
Q 040367 244 I-----GV--RPNAFVYNTLMDGFCLTGRVNRAKEL 272 (400)
Q Consensus 244 ~-----~~--~~~~~~~~~l~~~~~~~~~~~~a~~~ 272 (400)
. |. -.+..++..+...+...+++..|...
T Consensus 1086 ~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ 1121 (1236)
T KOG1839|consen 1086 KNKKVLGPKELETALSYHALARLFESMKDFRNALEH 1121 (1236)
T ss_pred HHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHH
Confidence 4 11 12344555566666666666555443
No 411
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=66.34 E-value=27 Score=31.00 Aligned_cols=106 Identities=14% Similarity=0.034 Sum_probs=74.7
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 040367 221 IMDELCKNGKMDEASRLLDLMIQIGVRPNAFVY-NTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNK 299 (400)
Q Consensus 221 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 299 (400)
-++.+...+.++.|...+.++++. .|+...| ..-..++.+.+++..|..=+..+.+.. +-....|..=..++...+
T Consensus 10 ean~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHH
Confidence 345667778999999999999985 5654444 334478899999999999888888765 323334444455666677
Q ss_pred CHHHHHHHHHHHHhCCCCCchhhHHHHHHHHH
Q 040367 300 EIEGALSLYGEMLSKGIKPDVVIYNTLFVVLF 331 (400)
Q Consensus 300 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 331 (400)
.+.+|...|+.... +.|+..-....+.-|-
T Consensus 87 ~~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 87 EFKKALLDLEKVKK--LAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHHHhhh--cCcCcHHHHHHHHHHH
Confidence 77788877777665 4677776666665553
No 412
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.15 E-value=1.3e+02 Score=28.97 Aligned_cols=72 Identities=13% Similarity=0.076 Sum_probs=42.7
Q ss_pred HHHHhcCChhhHHHHHHHHHhcCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 040367 60 NCFCKMGRVSHGFVVLGRILRSCFTP---NAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTG 136 (400)
Q Consensus 60 ~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 136 (400)
.-+.+.+.+++|+++.+..... .| -...+...|..+...|++++|-...-.|. .-+..-|...+..+...+
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~----gn~~~eWe~~V~~f~e~~ 437 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKML----GNNAAEWELWVFKFAELD 437 (846)
T ss_pred HHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHh----cchHHHHHHHHHHhcccc
Confidence 3445666777777666654432 23 23455666667777777777777766666 235555555555555555
Q ss_pred C
Q 040367 137 H 137 (400)
Q Consensus 137 ~ 137 (400)
+
T Consensus 438 ~ 438 (846)
T KOG2066|consen 438 Q 438 (846)
T ss_pred c
Confidence 4
No 413
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=65.99 E-value=50 Score=26.85 Aligned_cols=59 Identities=12% Similarity=0.097 Sum_probs=41.4
Q ss_pred HHHHHHHHhhCcHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 040367 324 NTLFVVLFEIHQVERAFKLFDEMQRD----GV-AADTWTYRTFIDGLCKNSYIVEAVELFRTLR 382 (400)
Q Consensus 324 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 382 (400)
..+...|...|++++|.++|+.+... |. .+...+...+..++.+.|+.+..+.+.=++.
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 45667788888888888888887532 32 3445666677778888888888777655543
No 414
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=65.37 E-value=84 Score=26.58 Aligned_cols=100 Identities=11% Similarity=0.162 Sum_probs=52.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHcCCCCCCcccchH
Q 040367 88 VTFTSLIKGLCAESRIMEAAALFTKLRV----FGCEPNVFTYNTLING-LYRTGHTIVALNLFEEMASGNGEFGVEGFVD 162 (400)
Q Consensus 88 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 162 (400)
..+......|++.|+-+.|.+.+.+..+ .|.+.|+..+..-+.. |....-..+-++..+.+.+.|+++...
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRr---- 180 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERR---- 180 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhh----
Confidence 4555666778888888888887766544 3555666554433322 222222233333333333333332221
Q ss_pred HHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040367 163 KAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMD 208 (400)
Q Consensus 163 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 208 (400)
.-..+|..+- |....++.+|-.+|-+...
T Consensus 181 ---------------NRlKvY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 181 ---------------NRLKVYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred ---------------hhHHHHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 1223444442 3445678888888877654
No 415
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=65.02 E-value=27 Score=32.60 Aligned_cols=33 Identities=21% Similarity=0.369 Sum_probs=0.0
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 040367 192 YANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDE 224 (400)
Q Consensus 192 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 224 (400)
+.|++.+|.+.+-.+...+..|...-...+.++
T Consensus 507 ~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d~ 539 (566)
T PF07575_consen 507 DEGDFREAASLLVSLLKSPIAPKSFWPLLLCDA 539 (566)
T ss_dssp ---------------------------------
T ss_pred hhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHHH
Confidence 447777777777777776666666555554443
No 416
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=65.00 E-value=79 Score=26.16 Aligned_cols=198 Identities=13% Similarity=0.082 Sum_probs=0.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhCCChHHHHHHHHHHHHc----CCCCCHHhHH
Q 040367 186 VIRGFCYANDWNEAKCLLIEMMDQGVQPNV-------VTFNVIMDELCKNGKMDEASRLLDLMIQI----GVRPNAFVYN 254 (400)
Q Consensus 186 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~ 254 (400)
+.+-..+.+++++|+..+.+....|+..+. .+...+...|...|++...-+......+. .-+.......
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHhcCCCCChhhH-----HHHHHHHHhcCCHHHHHH----HHHHHHhCCCCCchhhHH
Q 040367 255 TLMDGFCLTGR-VNRAKELFVSMESMGCTHTVFSY-----SILINGYCKNKEIEGALS----LYGEMLSKGIKPDVVIYN 324 (400)
Q Consensus 255 ~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~ 324 (400)
+++..+....+ ++..+.+.....+.....+.... ..++..+.+.|.+.+|+. ++.++.+..-+|+..+..
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vh 168 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVH 168 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehh
Q ss_pred HHH-HHHHhhCcHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHH
Q 040367 325 TLF-VVLFEIHQVERAFKLFDEMQRD----GVAADTWTYRTFIDGLCKN--SYIVEAVELFRTLRI 383 (400)
Q Consensus 325 ~l~-~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~ 383 (400)
.+= .+|-...+..++..-+..++.. -.+|....---|+.+...+ .++.-|...|-+..+
T Consensus 169 llESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 169 LLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred hhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHh
No 417
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=64.94 E-value=42 Score=31.31 Aligned_cols=92 Identities=13% Similarity=0.135 Sum_probs=62.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCchhhHHHHHHHHHhhCcHH------HHHHHHHHHHHcCCCCCHHHHHH
Q 040367 289 SILINGYCKNKEIEGALSLYGEMLSKG--IKPDVVIYNTLFVVLFEIHQVE------RAFKLFDEMQRDGVAADTWTYRT 360 (400)
Q Consensus 289 ~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~ 360 (400)
.+|..+|...|++..+.++++.+..++ -+.-...+|..++...+.|.++ .|.+.++... +.-|..||..
T Consensus 32 ~sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~al 108 (1117)
T COG5108 32 ASLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYAL 108 (1117)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHH
Confidence 378999999999999999999988762 2223456788888888888754 3344444433 4557888888
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHH
Q 040367 361 FIDGLCKNSYIVEAVELFRTLRI 383 (400)
Q Consensus 361 l~~~~~~~g~~~~a~~~~~~~~~ 383 (400)
++.+-..--+-.-.+-++.+++.
T Consensus 109 l~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 109 LCQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHHhhcChHhHHhccHHHHHHHH
Confidence 87776654444444555555553
No 418
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=64.57 E-value=62 Score=24.75 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=13.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 040367 257 MDGFCLTGRVNRAKELFVSMES 278 (400)
Q Consensus 257 ~~~~~~~~~~~~a~~~~~~~~~ 278 (400)
+..|.+.|.+++|.+++++...
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc
Confidence 3456666666666666666654
No 419
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=64.04 E-value=1.7e+02 Score=29.75 Aligned_cols=176 Identities=16% Similarity=0.164 Sum_probs=101.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHH------HhCCCCCC-----hHhHHHHHHHHHhcCCH
Q 040367 128 LINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQM------KDENINPD-----VVTYTSVIRGFCYANDW 196 (400)
Q Consensus 128 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~------~~~~~~~~-----~~~~~~l~~~~~~~~~~ 196 (400)
+..+|...|+..+|+..|.+....-.. .+--.++.... ...|-.|+ ..-|..+++.+-+.+..
T Consensus 926 lg~~yl~tge~~kAl~cF~~a~Sg~ge------~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~ 999 (1480)
T KOG4521|consen 926 LGIAYLGTGEPVKALNCFQSALSGFGE------GNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHA 999 (1480)
T ss_pred hheeeecCCchHHHHHHHHHHhhcccc------HHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccH
Confidence 444577889999999999998765332 22111111111 01221221 23467788888899999
Q ss_pred HHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHH-----
Q 040367 197 NEAKCLLIEMMDQGVQPN----VVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVN----- 267 (400)
Q Consensus 197 ~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----- 267 (400)
+.+.++-..+++. .+++ ..+++.+.+.....|.+-+|...+-+--. ..........++..++.+|.++
T Consensus 1000 E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npd--serrrdcLRqlvivLfecg~l~~L~~f 1076 (1480)
T KOG4521|consen 1000 EEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPD--SERRRDCLRQLVIVLFECGELEALATF 1076 (1480)
T ss_pred HHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCc--HHHHHHHHHHHHHHHHhccchHHHhhC
Confidence 9999998888764 2222 34677788888888888887765533111 0111234555666666666643
Q ss_pred -------HHHH-HHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHH-HHHHH
Q 040367 268 -------RAKE-LFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSL-YGEML 312 (400)
Q Consensus 268 -------~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~ 312 (400)
+... +++..-+...-.....|+.|-..+...+++.+|-.+ |+...
T Consensus 1077 pfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyam 1130 (1480)
T KOG4521|consen 1077 PFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAM 1130 (1480)
T ss_pred CccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHH
Confidence 3333 333333322222334466666667788888887654 44333
No 420
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=63.21 E-value=69 Score=30.03 Aligned_cols=74 Identities=16% Similarity=0.116 Sum_probs=53.2
Q ss_pred HHHHHHhccCChhHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhh------HHHHHHHHHhcCCCCChhhHHHH
Q 040367 22 ILFGCLAKNKHYDTVLSLFKRLNSTG--LFPDLYTYNILINCFCKMGRVSH------GFVVLGRILRSCFTPNAVTFTSL 93 (400)
Q Consensus 22 ~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~------a~~~~~~~~~~~~~~~~~~~~~l 93 (400)
.++.+|..+|++.++.++++.....+ -+--...++..++..++.|.++- |.+.++... +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 78999999999999999999997653 22335678889999999998654 444444443 33466677666
Q ss_pred HHHHH
Q 040367 94 IKGLC 98 (400)
Q Consensus 94 ~~~~~ 98 (400)
+++-.
T Consensus 110 ~~~sl 114 (1117)
T COG5108 110 CQASL 114 (1117)
T ss_pred HHhhc
Confidence 66543
No 421
>PRK10941 hypothetical protein; Provisional
Probab=62.74 E-value=87 Score=25.87 Aligned_cols=63 Identities=14% Similarity=0.018 Sum_probs=48.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCC
Q 040367 90 FTSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNG 153 (400)
Q Consensus 90 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 153 (400)
.+.+-.+|.+.++++.|+.+.+.+.... +.++.-+.--.-.|.+.|.+..|..=++...+..+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P 246 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCP 246 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC
Confidence 4556667888999999999999998875 55666677777788899998888877777655443
No 422
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=62.74 E-value=58 Score=23.82 Aligned_cols=44 Identities=20% Similarity=0.205 Sum_probs=19.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 040367 93 LIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTG 136 (400)
Q Consensus 93 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 136 (400)
++..+.+.++.-.|.++++.+.+.+...+..|-...+..+...|
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 33333444444444445544444443334444444444444444
No 423
>PRK11619 lytic murein transglycosylase; Provisional
Probab=62.49 E-value=1.5e+02 Score=28.41 Aligned_cols=180 Identities=8% Similarity=-0.023 Sum_probs=85.5
Q ss_pred cCCHHHHHHHHHHHHhCC-CCCCH--HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHH
Q 040367 193 ANDWNEAKCLLIEMMDQG-VQPNV--VTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRA 269 (400)
Q Consensus 193 ~~~~~~a~~~~~~~~~~~-~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 269 (400)
..+.+.|...+....... ..+.. .+...+.......+..+++...+....... .+......-+......++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 445577777777654332 11111 122223222222222445555555433221 1333333334444466677766
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC------------CCCCc------hhh--------H
Q 040367 270 KELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSK------------GIKPD------VVI--------Y 323 (400)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------~~~~~------~~~--------~ 323 (400)
...+..|.... .....-.--+.+++...|+.++|...|+.+... |.+++ ... -
T Consensus 332 ~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~ 410 (644)
T PRK11619 332 NTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQRLGEEYPLKIDKAPKPDSALTQGPE 410 (644)
T ss_pred HHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHHHcCCCCCCCCCCCCchhhhhccChH
Confidence 66666664432 223334445666666667777777776665321 11100 000 0
Q ss_pred HHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHH
Q 040367 324 NTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELF 378 (400)
Q Consensus 324 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 378 (400)
-.-+..+...|....|...+..+... .+......+.......|.++.++...
T Consensus 411 ~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~ 462 (644)
T PRK11619 411 MARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQAT 462 (644)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 11223445567777777777666653 23344444555555566666655444
No 424
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=62.01 E-value=14 Score=18.67 Aligned_cols=24 Identities=4% Similarity=0.170 Sum_probs=16.8
Q ss_pred cHHHHHHHHHHHHHhcccchhHHHHH
Q 040367 370 YIVEAVELFRTLRILKCELDIRAYNC 395 (400)
Q Consensus 370 ~~~~a~~~~~~~~~~~~~p~~~~~~~ 395 (400)
.++.|..+|++... +.|+..+|..
T Consensus 2 E~dRAR~IyeR~v~--~hp~~k~Wik 25 (32)
T PF02184_consen 2 EFDRARSIYERFVL--VHPEVKNWIK 25 (32)
T ss_pred hHHHHHHHHHHHHH--hCCCchHHHH
Confidence 45777888888776 4677777754
No 425
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=61.90 E-value=34 Score=20.85 Aligned_cols=49 Identities=12% Similarity=0.111 Sum_probs=26.2
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 040367 85 PNAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYR 134 (400)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 134 (400)
|....++.++..+++..-.++++..+.+....| ..+..+|..-++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 344455556666666666666666666666655 3445555544444443
No 426
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=61.28 E-value=11 Score=26.71 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=10.1
Q ss_pred CChHHHHHHHHHHHHcCCCCC
Q 040367 229 GKMDEASRLLDLMIQIGVRPN 249 (400)
Q Consensus 229 ~~~~~a~~~~~~~~~~~~~~~ 249 (400)
|.-..|..+|.+|++.|-+||
T Consensus 109 gsk~DaY~VF~kML~~G~pPd 129 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD 129 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc
Confidence 334444555555555554444
No 427
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=61.01 E-value=18 Score=17.44 Aligned_cols=15 Identities=27% Similarity=0.541 Sum_probs=7.6
Q ss_pred cHHHHHHHHHHHHHc
Q 040367 335 QVERAFKLFDEMQRD 349 (400)
Q Consensus 335 ~~~~a~~~~~~~~~~ 349 (400)
+.+.|..+|+++...
T Consensus 2 ~~~~~r~i~e~~l~~ 16 (33)
T smart00386 2 DIERARKIYERALEK 16 (33)
T ss_pred cHHHHHHHHHHHHHH
Confidence 344555555555543
No 428
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=60.66 E-value=88 Score=25.23 Aligned_cols=59 Identities=10% Similarity=0.070 Sum_probs=32.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-CCChHHHHHHHHHHHH
Q 040367 185 SVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCK-NGKMDEASRLLDLMIQ 243 (400)
Q Consensus 185 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~ 243 (400)
.++..+-+.|+++++...++++...+...+..-.+.+..+|-. .|....+++++..+.+
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 3555666677777777777777766555555555555555422 2444455555555444
No 429
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=60.60 E-value=65 Score=26.18 Aligned_cols=59 Identities=14% Similarity=-0.030 Sum_probs=43.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc----C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 040367 90 FTSLIKGLCAESRIMEAAALFTKLRVF----G-CEPNVFTYNTLINGLYRTGHTIVALNLFEEM 148 (400)
Q Consensus 90 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 148 (400)
.-.+...|.+.|++++|.++|+.+... | ..+...+...+..++.+.|+.+..+.+.-++
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 335667888999999999999988532 2 2445667777888888889887776655443
No 430
>PRK14700 recombination factor protein RarA; Provisional
Probab=60.20 E-value=1e+02 Score=25.83 Aligned_cols=64 Identities=20% Similarity=0.227 Sum_probs=40.8
Q ss_pred HHHHHHHH---hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCh-----HHHHHHHHHHHHcCCC
Q 040367 184 TSVIRGFC---YANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKM-----DEASRLLDLMIQIGVR 247 (400)
Q Consensus 184 ~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~ 247 (400)
.-+++++. +-.|++.|+-++-.|++.|-.|....-..++-++..-|.- ..|...++.....|.+
T Consensus 127 Yd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~P 198 (300)
T PRK14700 127 YEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGMP 198 (300)
T ss_pred HHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCh
Confidence 33455553 4578888888888888888777766666666666666642 2344445555555544
No 431
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=59.37 E-value=33 Score=19.85 Aligned_cols=22 Identities=14% Similarity=-0.011 Sum_probs=10.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 040367 95 KGLCAESRIMEAAALFTKLRVF 116 (400)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~ 116 (400)
-++.+.|++++|.+..+.+.+.
T Consensus 9 ig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 9 IGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhh
Confidence 3444555555555555555544
No 432
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=58.87 E-value=1.3e+02 Score=26.51 Aligned_cols=53 Identities=21% Similarity=0.107 Sum_probs=33.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhc--CChHHHHHHHHHH
Q 040367 95 KGLCAESRIMEAAALFTKLRVFGCEPNVF--TYNTLINGLYRT--GHTIVALNLFEEM 148 (400)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~--~~~~~a~~~~~~~ 148 (400)
..+...+++..|.++++.+... ++++.. .+..+..+|..- -++.+|.+.++..
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~ 195 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKL 195 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 3455889999999999999986 555544 455555555443 3444444444443
No 433
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.55 E-value=1.5e+02 Score=27.37 Aligned_cols=52 Identities=15% Similarity=0.038 Sum_probs=23.0
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHH-hhCcHHHHHHHHHHH
Q 040367 295 YCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLF-EIHQVERAFKLFDEM 346 (400)
Q Consensus 295 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~ 346 (400)
..+.|.+..|.++-+-+.+....-|+.....++..|+ +..+|+-.+++++..
T Consensus 352 l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 352 LAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred HHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3344555555555554444433323333334443332 344444444444443
No 434
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=57.67 E-value=1e+02 Score=24.93 Aligned_cols=32 Identities=13% Similarity=0.013 Sum_probs=14.5
Q ss_pred cchHHHHHHHHHHHhCCCCCChHhHHHHHHHH
Q 040367 159 GFVDKAKELFLQMKDENINPDVVTYTSVIRGF 190 (400)
Q Consensus 159 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 190 (400)
++++++...++++...+...+..--+.+..+|
T Consensus 15 eRy~dmv~~mk~~~~~~~eLt~eERnLlsvay 46 (236)
T PF00244_consen 15 ERYDDMVEYMKQLIEMNPELTEEERNLLSVAY 46 (236)
T ss_dssp THHHHHHHHHHHHHHTSS---HHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 44555555555555554444444444444444
No 435
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=57.26 E-value=39 Score=23.18 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=13.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040367 253 YNTLMDGFCLTGRVNRAKELFVSMES 278 (400)
Q Consensus 253 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 278 (400)
|..|+..|...|..++|.+++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 44455555555555555555555443
No 436
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=56.94 E-value=2.3e+02 Score=28.94 Aligned_cols=167 Identities=13% Similarity=0.083 Sum_probs=91.0
Q ss_pred HHhccCChhHHHHHHHHHHhC-----------------------CCCCC-----HHHHHHHHHHHHhcCChhhHHHHHHH
Q 040367 26 CLAKNKHYDTVLSLFKRLNST-----------------------GLFPD-----LYTYNILINCFCKMGRVSHGFVVLGR 77 (400)
Q Consensus 26 ~~~~~~~~~~a~~~~~~~~~~-----------------------~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~ 77 (400)
+|...|...+|+..|.++... |-.|+ .+-|..+++.+-+.+-.+.+.++-..
T Consensus 929 ~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQlA~~ 1008 (1480)
T KOG4521|consen 929 AYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQLAVK 1008 (1480)
T ss_pred eeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 577788888888888776531 21121 23466777777777777777777666
Q ss_pred HHhcCCC--CC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCC
Q 040367 78 ILRSCFT--PN-AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGE 154 (400)
Q Consensus 78 ~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 154 (400)
+++.-.. |+ ..+++.+.......|.+-+|...+-.-... +.-......++..+..+|..+.-.+
T Consensus 1009 AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npds--errrdcLRqlvivLfecg~l~~L~~----------- 1075 (1480)
T KOG4521|consen 1009 AIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDS--ERRRDCLRQLVIVLFECGELEALAT----------- 1075 (1480)
T ss_pred HHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcH--HHHHHHHHHHHHHHHhccchHHHhh-----------
Confidence 6654111 11 224555555566666666665544331110 1122345566667777776532221
Q ss_pred CCcccchHHHHH-HHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHH
Q 040367 155 FGVEGFVDKAKE-LFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIE 205 (400)
Q Consensus 155 ~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 205 (400)
..--|..++... +++..-....--....|..|-..+...+++.+|-.+.-+
T Consensus 1076 fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYE 1127 (1480)
T KOG4521|consen 1076 FPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYE 1127 (1480)
T ss_pred CCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHH
Confidence 111233455555 333332222222334566666677888999888776544
No 437
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=55.33 E-value=1.6e+02 Score=26.56 Aligned_cols=91 Identities=7% Similarity=0.029 Sum_probs=53.4
Q ss_pred HHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHH
Q 040367 25 GCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIM 104 (400)
Q Consensus 25 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 104 (400)
..+...|+++.+.+.+...... +.....+...+++.....|+++.|..+-+-|+...+. +.+.........-..|-++
T Consensus 331 ~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d 408 (831)
T PRK15180 331 VIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFD 408 (831)
T ss_pred HHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHH
Confidence 3355566777776666555432 1234445666667777777777777777777665544 3333333333344556677
Q ss_pred HHHHHHHHHHHcC
Q 040367 105 EAAALFTKLRVFG 117 (400)
Q Consensus 105 ~a~~~~~~~~~~~ 117 (400)
++.-.|+++...+
T Consensus 409 ~~~~~wk~~~~~~ 421 (831)
T PRK15180 409 KSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHHhccC
Confidence 7777777766554
No 438
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=55.23 E-value=1.2e+02 Score=25.20 Aligned_cols=184 Identities=12% Similarity=0.063 Sum_probs=108.2
Q ss_pred ccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CC
Q 040367 158 EGFVDKAKELFLQMKDENINPDVVTYTSVIRGFC----YANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCK----NG 229 (400)
Q Consensus 158 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 229 (400)
.+.+..+...+......+ +......+...|. ...+..+|.++|....+.|.. .....+...|.. ..
T Consensus 54 ~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~---~a~~~lg~~~~~G~gv~~ 127 (292)
T COG0790 54 PPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLA---EALFNLGLMYANGRGVPL 127 (292)
T ss_pred cccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccH---HHHHhHHHHHhcCCCccc
Confidence 334555566665555433 2233334444443 334578899999987776632 333334444444 34
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC-------CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----c
Q 040367 230 KMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTG-------RVNRAKELFVSMESMGCTHTVFSYSILINGYCK----N 298 (400)
Q Consensus 230 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 298 (400)
+..+|..+++++.+.|..+.......+...|..-. +...|...+.++...+ +......+...|.. .
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCC
Confidence 88999999999999876543223444444444321 3347888888888776 44455555555543 3
Q ss_pred CCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhC---------------cHHHHHHHHHHHHHcCCCCC
Q 040367 299 KEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIH---------------QVERAFKLFDEMQRDGVAAD 354 (400)
Q Consensus 299 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------------~~~~a~~~~~~~~~~~~~~~ 354 (400)
.++.+|...|+...+.|. ......+. .+...| +...|...+......+....
T Consensus 205 ~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 271 (292)
T COG0790 205 RDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNA 271 (292)
T ss_pred cCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhH
Confidence 478999999999999874 22222233 333334 55566666666655544433
No 439
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.97 E-value=2.3e+02 Score=28.20 Aligned_cols=115 Identities=13% Similarity=0.045 Sum_probs=57.2
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCh--hhHHHHHHHHHhcCCCCChhhHHH--
Q 040367 20 FNILFGCLAKNKHYDTVLSLFKRLNSTG---LFPDLYTYNILINCFCKMGRV--SHGFVVLGRILRSCFTPNAVTFTS-- 92 (400)
Q Consensus 20 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~-- 92 (400)
|..|+..|...|+.++|++++.+..... -.--...+..++..+.+.+.. +..++.-....+........++..
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 7778888888888888888888876531 011122334455555555444 444444444444321111111111
Q ss_pred ----------HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 040367 93 ----------LIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYR 134 (400)
Q Consensus 93 ----------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 134 (400)
.+-.|......+-+..+++.+....-.++....+.++..|.+
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 111233444455555555555544434455555555555543
No 440
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.45 E-value=63 Score=21.66 Aligned_cols=24 Identities=17% Similarity=0.167 Sum_probs=13.5
Q ss_pred HHHHHHHHhhCcHHHHHHHHHHHH
Q 040367 324 NTLFVVLFEIHQVERAFKLFDEMQ 347 (400)
Q Consensus 324 ~~l~~~~~~~~~~~~a~~~~~~~~ 347 (400)
..|.-.|.+.|+.+.|.+-|+.=.
T Consensus 76 AhLGlLys~~G~~e~a~~eFetEK 99 (121)
T COG4259 76 AHLGLLYSNSGKDEQAVREFETEK 99 (121)
T ss_pred HHHHHHHhhcCChHHHHHHHHHhh
Confidence 445555566666666666555443
No 441
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=54.32 E-value=1.5e+02 Score=25.88 Aligned_cols=65 Identities=6% Similarity=0.082 Sum_probs=48.2
Q ss_pred ChHhHHHH---HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hCCChHHHHHHHHHHHH
Q 040367 179 DVVTYTSV---IRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELC-KNGKMDEASRLLDLMIQ 243 (400)
Q Consensus 179 ~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~ 243 (400)
|...|.++ +..+.+.|-+..|.++.+-+...+..-|+.....+|+.|+ +.++++-.+++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 44444444 5577899999999999999998775557777777788664 66788877777777654
No 442
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=54.18 E-value=59 Score=21.23 Aligned_cols=64 Identities=13% Similarity=0.055 Sum_probs=29.6
Q ss_pred HHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHH
Q 040367 305 LSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEA 374 (400)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 374 (400)
.+++..+.+.|+- +......+-.+-...|+.+.|.+++..+. .| +..|...+.++...|..+-|
T Consensus 22 ~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 22 RDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhh
Confidence 3445555555432 22222222222224466666666666665 31 22345555555555554433
No 443
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=53.82 E-value=80 Score=22.66 Aligned_cols=22 Identities=5% Similarity=0.107 Sum_probs=10.9
Q ss_pred HHHhcCChhhHHHHHHHHHhcC
Q 040367 61 CFCKMGRVSHGFVVLGRILRSC 82 (400)
Q Consensus 61 ~~~~~~~~~~a~~~~~~~~~~~ 82 (400)
-+...|+++.|+++.+.+++.|
T Consensus 57 W~~D~Gd~~~AL~~a~yAi~~~ 78 (132)
T PF05944_consen 57 WLFDVGDFDGALDIAEYAIEHG 78 (132)
T ss_pred hhhcccCHHHHHHHHHHHHHcC
Confidence 3444455555555555555444
No 444
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=53.69 E-value=1.3e+02 Score=25.04 Aligned_cols=159 Identities=13% Similarity=0.103 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcC-CCCChhhHHHHHHHHHhcCCHH
Q 040367 34 DTVLSLFKRLNSTG--------LFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSC-FTPNAVTFTSLIKGLCAESRIM 104 (400)
Q Consensus 34 ~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~ 104 (400)
.....++.-+.+.| ++-|...++.++.- ...+.++--+-+++....+ -.--..++..+...|++.++.+
T Consensus 55 ~~maplYkyL~E~~n~kt~a~~ikfD~~~~n~l~kk--neeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ 132 (412)
T COG5187 55 KCMAPLYKYLAEKGNPKTSASVIKFDRGRMNTLLKK--NEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQ 132 (412)
T ss_pred hhhhHHHHHHHhccCCcccchheehhhHHHHHHHHh--hHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhh
Q ss_pred HHHHHHHHHHHc----CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCc--------------ccchHHHH
Q 040367 105 EAAALFTKLRVF----GCEPNVF-TYNTLINGLYRTGHTIVALNLFEEMASGNGEFGV--------------EGFVDKAK 165 (400)
Q Consensus 105 ~a~~~~~~~~~~----~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------------~~~~~~a~ 165 (400)
.+.++..+..+. |.+.|+. +-..|.-.|....-.++.++..+.+.+.|+++.. ..++.+|-
T Consensus 133 ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa 212 (412)
T COG5187 133 NGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAA 212 (412)
T ss_pred hHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHH
Q ss_pred HHHHHHHhCCCCCChHhHHHHHHHHHhcC
Q 040367 166 ELFLQMKDENINPDVVTYTSVIRGFCYAN 194 (400)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 194 (400)
.++......--.....+|...+....-.|
T Consensus 213 ~Ll~d~l~tF~S~El~sY~~~vrYa~~~G 241 (412)
T COG5187 213 ILLSDILPTFESSELISYSRAVRYAIFCG 241 (412)
T ss_pred HHHHHHhccccccccccHHHHHHHHHHhh
No 445
>PRK10941 hypothetical protein; Provisional
Probab=53.44 E-value=1.3e+02 Score=24.91 Aligned_cols=56 Identities=9% Similarity=-0.085 Sum_probs=27.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040367 257 MDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLS 313 (400)
Q Consensus 257 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 313 (400)
-.+|.+.++++.|..+.+.+.... +.++.-+.--.-.|.+.|.+..|..=++..++
T Consensus 188 K~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 188 KAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 334445555555555555555443 33343344444445555555555555444444
No 446
>PHA02875 ankyrin repeat protein; Provisional
Probab=52.99 E-value=1.7e+02 Score=26.03 Aligned_cols=16 Identities=19% Similarity=0.113 Sum_probs=7.7
Q ss_pred HHHHhcCCHHHHHHHH
Q 040367 188 RGFCYANDWNEAKCLL 203 (400)
Q Consensus 188 ~~~~~~~~~~~a~~~~ 203 (400)
...+..|+.+.+..++
T Consensus 73 ~~A~~~g~~~~v~~Ll 88 (413)
T PHA02875 73 HDAVEEGDVKAVEELL 88 (413)
T ss_pred HHHHHCCCHHHHHHHH
Confidence 3444556655544433
No 447
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=52.08 E-value=1.4e+02 Score=25.05 Aligned_cols=227 Identities=15% Similarity=0.179 Sum_probs=0.0
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcC-ChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 040367 43 LNSTGLFPDLYTYNILINCFCKMG-RVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPN 121 (400)
Q Consensus 43 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 121 (400)
+...|..|....-..+=..+.+.| -..-|.++|+..+ .....+.+++.+.+.+.-+.-.++| ||+
T Consensus 157 ~l~nGt~~~tvl~~L~~d~LVkeGi~l~F~~~lFk~~~------~Ek~i~~lis~Lrkg~md~rLmeff--------Ppn 222 (412)
T KOG2297|consen 157 LLSNGTLPATVLQSLLNDNLVKEGIALSFAVKLFKEWL------VEKDINDLISSLRKGKMDDRLMEFF--------PPN 222 (412)
T ss_pred HHhCCCCCHHHHHHHHHhhHHHHhHHHHHHHHHHHHHH------hhccHHHHHHHHHhcChHhHHHHhc--------CCc
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHH
Q 040367 122 VFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKC 201 (400)
Q Consensus 122 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 201 (400)
-.+-......+...| ..+..++.+.-...+ .-...-..|..-..+...+++.+.
T Consensus 223 krs~E~Fak~Ft~ag------------------------L~elvey~~~q~~~~--a~kElq~~L~~q~s~e~p~~evi~ 276 (412)
T KOG2297|consen 223 KRSVEHFAKYFTDAG------------------------LKELVEYHRNQQSEG--ARKELQKELQEQVSEEDPVKEVIL 276 (412)
T ss_pred chhHHHHHHHHhHhh------------------------HHHHHHHHHHHHHHH--HHHHHHHHHHHHhccCCCHHHHHH
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHH-----------
Q 040367 202 LLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAK----------- 270 (400)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~----------- 270 (400)
..++-.+..--|++.....+-++......|.+-.+....-.-. ....|..|+.+++.+|+.+-..
T Consensus 277 ~VKee~k~~nlPe~eVi~ivWs~iMsaveWnKkeelva~qalr----hlK~yaPLL~af~s~g~sEL~Ll~KvQe~CYen 352 (412)
T KOG2297|consen 277 YVKEEMKRNNLPETEVIGIVWSGIMSAVEWNKKEELVAEQALR----HLKQYAPLLAAFCSQGQSELELLLKVQEYCYEN 352 (412)
T ss_pred HHHHHHHhcCCCCceEEeeeHhhhhHHHhhchHHHHHHHHHHH----HHHhhhHHHHHHhcCChHHHHHHHHHHHHHHhh
Q ss_pred ----HHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040367 271 ----ELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLS 313 (400)
Q Consensus 271 ----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 313 (400)
..|.++...-.+.++-+=..++..|-.......-..++++|..
T Consensus 353 ~~fMKaFqkiV~lfYk~dVLsEe~IL~Wyk~gh~~KGk~~Fleqmkk 399 (412)
T KOG2297|consen 353 IHFMKAFQKIVVLFYKADVLSEETILKWYKEGHVAKGKSVFLEQMKK 399 (412)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhccccccHHHHHHHHHH
No 448
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=51.73 E-value=76 Score=21.75 Aligned_cols=88 Identities=13% Similarity=0.126 Sum_probs=49.3
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 040367 30 NKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAAL 109 (400)
Q Consensus 30 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 109 (400)
....++|..+.+.+...+. .....--.-+..+...|++++| +..- .....||...|-+|-. .+.|--+++...
T Consensus 19 ~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A---Ll~~-~~~~~pdL~p~~AL~a--~klGL~~~~e~~ 91 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA---LLLP-QCHCYPDLEPWAALCA--WKLGLASALESR 91 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH---HHHH-TTS--GGGHHHHHHHH--HHCT-HHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH---HHhc-ccCCCccHHHHHHHHH--HhhccHHHHHHH
Confidence 4467888888888887652 1222223334566788888888 2111 2223567776665544 477777888888
Q ss_pred HHHHHHcCCCCCHHHH
Q 040367 110 FTKLRVFGCEPNVFTY 125 (400)
Q Consensus 110 ~~~~~~~~~~~~~~~~ 125 (400)
+.++-..| .|....|
T Consensus 92 l~rla~~g-~~~~q~F 106 (116)
T PF09477_consen 92 LTRLASSG-SPELQAF 106 (116)
T ss_dssp HHHHCT-S-SHHHHHH
T ss_pred HHHHHhCC-CHHHHHH
Confidence 87777665 4444333
No 449
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=51.64 E-value=65 Score=20.95 Aligned_cols=42 Identities=5% Similarity=-0.049 Sum_probs=20.8
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040367 73 VVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKLR 114 (400)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 114 (400)
++|+-....|+..|...|..+++...-+--++...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 444444444555555555555554444444444555555544
No 450
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=50.92 E-value=47 Score=20.25 Aligned_cols=48 Identities=17% Similarity=0.196 Sum_probs=25.7
Q ss_pred ChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 040367 16 PVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCK 64 (400)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 64 (400)
....++.++...++..-.+.++..+.++...|. -+..+|..-++.+++
T Consensus 7 ~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 7 EDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 334555566666666666666666666665552 345555554444443
No 451
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=50.65 E-value=58 Score=22.49 Aligned_cols=46 Identities=20% Similarity=0.198 Sum_probs=27.7
Q ss_pred HHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 040367 23 LFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV 68 (400)
Q Consensus 23 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 68 (400)
++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-.
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 4555555566666777777777666555555555555565555543
No 452
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=50.32 E-value=81 Score=21.64 Aligned_cols=39 Identities=13% Similarity=0.039 Sum_probs=15.8
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHH
Q 040367 265 RVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGA 304 (400)
Q Consensus 265 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 304 (400)
..++|..+.+.+...+. ....+--+-+..+.+.|+|++|
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A 59 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA 59 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH
Confidence 34555555555554431 1112222223334455555555
No 453
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=50.03 E-value=1.3e+02 Score=23.88 Aligned_cols=96 Identities=15% Similarity=0.056 Sum_probs=52.5
Q ss_pred hcCCHHHHHHHHHHHHH----cCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHH
Q 040367 99 AESRIMEAAALFTKLRV----FGCEPNV--FTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMK 172 (400)
Q Consensus 99 ~~~~~~~a~~~~~~~~~----~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 172 (400)
....+++|.+.|.-..- .+.++.. ..+..+.-.|-..|+.+....+ ...|.+.|.+..
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~f----------------l~~Al~~y~~a~ 152 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRF----------------LRKALEFYEEAY 152 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHH----------------HHHHHHHHHHHH
Confidence 34455555554443322 1223332 2334444555556664444433 455666676665
Q ss_pred hCCCCC----C-hHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 040367 173 DENINP----D-VVTYTSVIRGFCYANDWNEAKCLLIEMMDQG 210 (400)
Q Consensus 173 ~~~~~~----~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 210 (400)
...-.| + ......+.....+.|+.++|.+.|..+...+
T Consensus 153 ~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 153 ENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 432121 1 2334456667788899999999999888764
No 454
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=50.02 E-value=1.9e+02 Score=25.72 Aligned_cols=61 Identities=15% Similarity=0.118 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHc------CC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040367 217 TFNVIMDELCKNGKMDEASRLLDLMIQI------GV-RPNAFVYNTLMDGFCLTGRVNRAKELFVSME 277 (400)
Q Consensus 217 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 277 (400)
+...+++.++-.|++..|+++++.+.-. .+ .-...++.-+.-+|.-.+++.+|.++|..+.
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677788899999999998766322 11 1234566778888999999999999998874
No 455
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=49.98 E-value=2.4e+02 Score=26.93 Aligned_cols=18 Identities=17% Similarity=0.307 Sum_probs=13.5
Q ss_pred HHhcCcHHHHHHHHHHHH
Q 040367 365 LCKNSYIVEAVELFRTLR 382 (400)
Q Consensus 365 ~~~~g~~~~a~~~~~~~~ 382 (400)
+.+.|++++|++.++++.
T Consensus 515 ~~~~g~~~~AL~~i~~L~ 532 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKLD 532 (613)
T ss_dssp HHHTT-HHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHhCC
Confidence 467899999988877765
No 456
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=49.93 E-value=91 Score=22.14 Aligned_cols=43 Identities=16% Similarity=0.284 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHH
Q 040367 337 ERAFKLFDEMQRDGVAAD-TWTYRTFIDGLCKNSYIVEAVELFR 379 (400)
Q Consensus 337 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~ 379 (400)
+...++|..|...|+... +..|......+...|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 335677888888776443 5566777777788888888888875
No 457
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.45 E-value=1.2e+02 Score=29.76 Aligned_cols=95 Identities=14% Similarity=0.091 Sum_probs=60.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCCC
Q 040367 100 ESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENINPD 179 (400)
Q Consensus 100 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 179 (400)
+.++++.+.+.+...--| .++|..+.+.|-++-|+.+.+.-..+-.---..|+++.|++.-.++- +
T Consensus 606 ~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~tRF~LaLe~gnle~ale~akkld------d 671 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDERTRFELALECGNLEVALEAAKKLD------D 671 (1202)
T ss_pred hhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcchheeeehhcCCHHHHHHHHHhcC------c
Confidence 456666666554432212 34566667777777776665443322222223566777776654443 5
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040367 180 VVTYTSVIRGFCYANDWNEAKCLLIEMMD 208 (400)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 208 (400)
..+|..|.....+.|+.+-|+..|+....
T Consensus 672 ~d~w~rLge~Al~qgn~~IaEm~yQ~~kn 700 (1202)
T KOG0292|consen 672 KDVWERLGEEALRQGNHQIAEMCYQRTKN 700 (1202)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 67899999999999999988888887654
No 458
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=49.10 E-value=1.6e+02 Score=24.72 Aligned_cols=118 Identities=13% Similarity=0.088 Sum_probs=63.0
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 040367 221 IMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKE 300 (400)
Q Consensus 221 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 300 (400)
++....+.++.....+.+..+. ........+......|++..|+++..+..+.- .....++.+-..- .+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l--~~l~~~~c~~~L~---~~ 172 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQLL--EELKGYSCVRHLS---SQ 172 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH--HhcccchHHHHHh---HH
Confidence 3444444444445444444441 44455566777778899999988888776531 0111121111111 12
Q ss_pred HHHHHHHHHHHHhC-----CCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHc
Q 040367 301 IEGALSLYGEMLSK-----GIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRD 349 (400)
Q Consensus 301 ~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 349 (400)
+++-.....++.+. -...|+..|..+..+|.-.|+...+.+-+...-..
T Consensus 173 L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~~f~~ 226 (291)
T PF10475_consen 173 LQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQMHFTS 226 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 33333333332221 11347778888888888888777766655555443
No 459
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=48.90 E-value=1.4e+02 Score=24.06 Aligned_cols=36 Identities=8% Similarity=0.348 Sum_probs=19.0
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 040367 247 RPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTH 283 (400)
Q Consensus 247 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 283 (400)
.|.+.....++..|. .+++++|.+++.++-+.|..|
T Consensus 236 ~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp 271 (333)
T KOG0991|consen 236 EPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSP 271 (333)
T ss_pred CCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCH
Confidence 345555555554442 345666666666666555443
No 460
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=48.27 E-value=1.7e+02 Score=24.71 Aligned_cols=72 Identities=14% Similarity=0.121 Sum_probs=39.9
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----------cCChHHH
Q 040367 72 FVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYR----------TGHTIVA 141 (400)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~a 141 (400)
.++++.+...++.|.-.++.-+.-.+.+.=.+.+++.+|+.+... ..-|..|+..|+. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 455666666666666666666555566666666666666666532 2224444443332 3666666
Q ss_pred HHHHHHH
Q 040367 142 LNLFEEM 148 (400)
Q Consensus 142 ~~~~~~~ 148 (400)
.++++..
T Consensus 338 mkLLQ~y 344 (370)
T KOG4567|consen 338 MKLLQNY 344 (370)
T ss_pred HHHHhcC
Confidence 6555543
No 461
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=47.92 E-value=2e+02 Score=25.42 Aligned_cols=174 Identities=10% Similarity=0.020 Sum_probs=94.6
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc---------CCCCC
Q 040367 181 VTYTSVIRGFCYANDWNEAKCLLIEMMDQG--VQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQI---------GVRPN 249 (400)
Q Consensus 181 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~ 249 (400)
..+.-+..-|...|+++.|++.|-+..+-- ..-....|..+|..-.-.|+|.....+..+..+. .+++.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 456777888999999999999998855421 1123345556666667778888877777766554 12233
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCC-ChhhHHHHHHHHHhcCCHHHH-----HHHHHHHHhCCCC
Q 040367 250 AFVYNTLMDGFCLTGRVNRAKELFVSMESMG------CTH-TVFSYSILINGYCKNKEIEGA-----LSLYGEMLSKGIK 317 (400)
Q Consensus 250 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~-~~~~~~~l~~~~~~~~~~~~a-----~~~~~~~~~~~~~ 317 (400)
...+..+.... .+++..|...|-...... +.| |..+|. .+.+.+.-+.-+-- -..|+.+.+.
T Consensus 231 l~C~agLa~L~--lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYg-gLcALAtfdr~~Lk~~vi~n~~Fk~flel--- 304 (466)
T KOG0686|consen 231 LKCAAGLANLL--LKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYG-GLCALATFDRQDLKLNVIKNESFKLFLEL--- 304 (466)
T ss_pred hHHHHHHHHHH--HHHHHHHHHHHHhCCCCccCccceecchhhHHHH-hhHhhccCCHHHHHHHHHcchhhhhHHhc---
Confidence 33444444443 336666665554432211 112 333333 22233322221111 1223333332
Q ss_pred CchhhHHHHHHHHHhhCcHHHHHHHHHHHHHc-----CCCCCHHHHHHHHH
Q 040367 318 PDVVIYNTLFVVLFEIHQVERAFKLFDEMQRD-----GVAADTWTYRTFID 363 (400)
Q Consensus 318 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~ 363 (400)
.+..+..+...| .+++...+++++++... -+.|...+.-.+|+
T Consensus 305 -~Pqlr~il~~fy--~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR 352 (466)
T KOG0686|consen 305 -EPQLREILFKFY--SSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIR 352 (466)
T ss_pred -ChHHHHHHHHHh--hhhHHHHHHHHHHhccceeechhcchhHHHHHHHHH
Confidence 445556666655 57888888888887643 24455555444443
No 462
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=47.88 E-value=1.7e+02 Score=24.68 Aligned_cols=42 Identities=10% Similarity=0.091 Sum_probs=23.1
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040367 236 RLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSME 277 (400)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 277 (400)
++++.+.+.++.|.-..|.-+.-.+.+.=.+.+.+.+|+.+.
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~ 305 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL 305 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh
Confidence 345555555555555555555555555555555556665554
No 463
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=47.16 E-value=57 Score=22.51 Aligned_cols=45 Identities=18% Similarity=0.217 Sum_probs=28.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 040367 93 LIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGH 137 (400)
Q Consensus 93 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 137 (400)
++..+...+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 344444555566677777777776655666666666666666664
No 464
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=46.81 E-value=1e+02 Score=21.85 Aligned_cols=43 Identities=19% Similarity=0.175 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHH
Q 040367 268 RAKELFVSMESMGCTHT-VFSYSILINGYCKNKEIEGALSLYGE 310 (400)
Q Consensus 268 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~ 310 (400)
.+.++|..|...++... +..|......+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 55556666655443332 33445555555556666666665554
No 465
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=46.56 E-value=1.9e+02 Score=24.79 Aligned_cols=96 Identities=17% Similarity=0.008 Sum_probs=67.5
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhcC---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 040367 54 TYNILINCFCKMGRVSHGFVVLGRILRSC---FTPNAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLIN 130 (400)
Q Consensus 54 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 130 (400)
.|.-=.+-|.+.+++..|...|.+-++.. ...+...|+.-..+-...|++..|+.=-...+... +-....|..=..
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~-P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLK-PTHLKAYIRGAK 161 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhhhhhhH
Confidence 45566677888889999999998877653 22345566666666667788888887777777653 334556666666
Q ss_pred HHHhcCChHHHHHHHHHHHc
Q 040367 131 GLYRTGHTIVALNLFEEMAS 150 (400)
Q Consensus 131 ~~~~~~~~~~a~~~~~~~~~ 150 (400)
++....+++.|..+.++...
T Consensus 162 c~~eLe~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEEGLQ 181 (390)
T ss_pred HHHHHHHHHHHHHHHhhhhh
Confidence 77777788888877776644
No 466
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.37 E-value=3e+02 Score=27.13 Aligned_cols=49 Identities=10% Similarity=0.104 Sum_probs=33.4
Q ss_pred HHHhccCChhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChhhHHHHHHHHH
Q 040367 25 GCLAKNKHYDTVLSLFKRLNSTGLFPDL--YTYNILINCFCKMGRVSHGFVVLGRIL 79 (400)
Q Consensus 25 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~ 79 (400)
..|...|++++|++.-+. +|+. ..+..-...|.+.+++..|-++|.++.
T Consensus 366 k~yLd~g~y~kAL~~ar~------~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~ 416 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIART------RPDALETVLLKQADFLFQDKEYLRAAEIYAETL 416 (911)
T ss_pred HHHHhcchHHHHHHhccC------CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 456778888888876432 2332 234444566778889999999988873
No 467
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=46.24 E-value=1.6e+02 Score=26.22 Aligned_cols=19 Identities=26% Similarity=0.433 Sum_probs=13.7
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 040367 260 FCLTGRVNRAKELFVSMES 278 (400)
Q Consensus 260 ~~~~~~~~~a~~~~~~~~~ 278 (400)
+...|++.+|...|+.+..
T Consensus 214 ~~t~gKF~eA~~~Fr~iL~ 232 (422)
T PF06957_consen 214 LFTAGKFEEAIEIFRSILH 232 (422)
T ss_dssp HHHTT-HHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHH
Confidence 4567888888888888764
No 468
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=45.95 E-value=57 Score=22.76 Aligned_cols=45 Identities=16% Similarity=0.174 Sum_probs=24.5
Q ss_pred HHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 040367 22 ILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 66 (400)
Q Consensus 22 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 66 (400)
.++..+.+.+.+-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 455555555556666666666666655555554444444554444
No 469
>PF06855 DUF1250: Protein of unknown function (DUF1250); InterPro: IPR023089 This entry represents the YozE-like domain found in a group of proteins of unknown function.; PDB: 2KVS_A 2FJ6_A 2O6K_B.
Probab=45.75 E-value=53 Score=18.25 Aligned_cols=40 Identities=18% Similarity=0.278 Sum_probs=27.1
Q ss_pred HHHHhcCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHH
Q 040367 5 DYMLNMRPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLN 44 (400)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 44 (400)
+.+......|.....+..+...+..++....+++.|+++.
T Consensus 3 ~~i~~D~~FPK~~~~~~eI~~Yle~~~~~~~~~~~fd~aw 42 (46)
T PF06855_consen 3 NDIFQDHSFPKQETDFDEISSYLESNYDYLESMEIFDRAW 42 (46)
T ss_dssp HHHHTSTTS-TT-SSHHHHHHHHHCHCCHHCCHHHHHHHH
T ss_pred hhhhhCcCCCCCCCCHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 4455555556677788888888888888777777777664
No 470
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=45.64 E-value=59 Score=25.95 Aligned_cols=55 Identities=15% Similarity=0.070 Sum_probs=38.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHc
Q 040367 294 GYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRD 349 (400)
Q Consensus 294 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 349 (400)
+..+.++.+.+.+++.+....- +-....|-.+...--+.|+.+.|.+.+++..+.
T Consensus 4 ~~~~~~D~~aaaely~qal~la-p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELA-PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcC-chhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 3456677777888887777652 224566777777777788888888888877765
No 471
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=45.53 E-value=1e+02 Score=21.33 Aligned_cols=21 Identities=5% Similarity=0.064 Sum_probs=10.9
Q ss_pred HHhcCChhhHHHHHHHHHhcC
Q 040367 62 FCKMGRVSHGFVVLGRILRSC 82 (400)
Q Consensus 62 ~~~~~~~~~a~~~~~~~~~~~ 82 (400)
+.+....++|+++++.|.+.|
T Consensus 71 lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 71 LRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHhCcHHHHHHHHHHHHHhC
Confidence 344445555555555555554
No 472
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=45.50 E-value=1.7e+02 Score=23.84 Aligned_cols=160 Identities=14% Similarity=0.060 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC----------
Q 040367 234 ASRLLDLMIQIGVRPNAFVYNTLMDGFCLT----GRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNK---------- 299 (400)
Q Consensus 234 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------- 299 (400)
+.+.|.++.+. +..|......-+.-+... |.+.+--.++..-...+...+...-..++-++...+
T Consensus 33 v~k~f~~a~~~-i~vd~~~i~~a~~wL~~~Q~~dG~F~e~~~~~~~~~~g~~~~~~~lTA~VliAL~e~~~~~~~~~~~~ 111 (246)
T PF07678_consen 33 VVKVFSQAKKY-IFVDENVICRAVKWLISQQQPDGSFEEDGPVIHREMQGGVEDDIALTAYVLIALLEAGSLCDSEKPEY 111 (246)
T ss_dssp HHHHHHHHTTT-S-CEHHHHHHHHHHHHHHBETTSEB--SSS-SSGGGSGGGTHHHHHHHHHHHHHHHCHCCHTTTHHCH
T ss_pred HHHHHHHHHHh-hcCCHHHHHHHHHHHHHhhcCCCccccCCCccccccCCCCCCCeeehHHHHHHHHhhhhhccccchhh
Q ss_pred --CHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHc-------------------------CCC
Q 040367 300 --EIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRD-------------------------GVA 352 (400)
Q Consensus 300 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------------------------~~~ 352 (400)
-..+|..+++.-... ..+..+...+.-++...|+...+..+++.+.+. +..
T Consensus 112 ~~~i~kA~~~L~~~~~~--~~~~Y~lAl~aYAL~la~~~~~~~~~~~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~s 189 (246)
T PF07678_consen 112 ENAINKALNYLERHLDN--IQDPYTLALVAYALALAGDSPQASKLLNKLNSMATTEGGLRYWSSDESSSSSSSPWSRGSS 189 (246)
T ss_dssp HHHHHHHHHHHHHHHGC--TSSHHHHHHHHHHHHHTTTCHHHHHHHHHHHCHCEETTTTCEE-SSSSSSSSSSTTT-SHH
T ss_pred HHHHHHHHHHHHHhccc--cCCHHHHHHHHHHHHhhcccchHHHHHHHHHHhhhhccccCcccCCcccccccccccccch
Q ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-----cccchhHHHHHH
Q 040367 353 ADTWTYRTFIDGLCKNSYIVEAVELFRTLRIL-----KCELDIRAYNCL 396 (400)
Q Consensus 353 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~p~~~~~~~l 396 (400)
.+.++-...+.++.+.++.+.+..+.+-+.+. |+.-+..|..+|
T Consensus 190 ~~vEtTaYaLLa~l~~~~~~~~~~iv~WL~~qr~~~Ggf~STQdTvvaL 238 (246)
T PF07678_consen 190 LDVETTAYALLALLKRGDLEEASPIVRWLISQRNSGGGFGSTQDTVVAL 238 (246)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHCTTTTSSTSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcCCCCccCcHHHHHHHH
No 473
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=45.38 E-value=51 Score=23.02 Aligned_cols=46 Identities=20% Similarity=0.228 Sum_probs=29.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 040367 92 SLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGH 137 (400)
Q Consensus 92 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 137 (400)
.++..+...+..-.|.++++.+.+.+...+..|...-+..+.+.|-
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGL 57 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCe
Confidence 4555566666677777888888777666666666666666666664
No 474
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=45.35 E-value=2.2e+02 Score=25.27 Aligned_cols=63 Identities=14% Similarity=0.181 Sum_probs=46.6
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 040367 181 VTYTSVIRGFCYANDWNEAKCLLIEMMDQ------GVQ-PNVVTFNVIMDELCKNGKMDEASRLLDLMIQ 243 (400)
Q Consensus 181 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 243 (400)
.+...|++.++-.||+..|+++++.+.-. .++ -...++.-+.-+|.-.+++.+|.++|..++-
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566788899999999999999875321 112 2334666777788889999999999987754
No 475
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=44.93 E-value=2e+02 Score=24.71 Aligned_cols=65 Identities=15% Similarity=0.194 Sum_probs=48.8
Q ss_pred hhhHHHHHHHHHhcCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 040367 68 VSHGFVVLGRILRSCFTPNA----VTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYR 134 (400)
Q Consensus 68 ~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 134 (400)
.++.+.++..+++. -|+. -.|..++......|.++.++.+|++.+..|..|-...-..++..+..
T Consensus 119 ~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~~ 187 (353)
T PF15297_consen 119 KEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILKM 187 (353)
T ss_pred HHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHh
Confidence 44677777777765 4454 35777888888889999999999999999888877777777766553
No 476
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=44.44 E-value=3.2e+02 Score=26.88 Aligned_cols=84 Identities=13% Similarity=0.105 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHh-cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---C----------CchhhHHHHHHHHH
Q 040367 266 VNRAKELFVSMES-MGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGI---K----------PDVVIYNTLFVVLF 331 (400)
Q Consensus 266 ~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~----------~~~~~~~~l~~~~~ 331 (400)
.++....++.+.+ .++..+......+.. ...|+...|+.++++....+- . .+...+..++..+
T Consensus 180 ~eeIv~~L~~Il~~EgI~id~eAL~lIA~--~A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL- 256 (830)
T PRK07003 180 AGHIVSHLERILGEERIAFEPQALRLLAR--AAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDAL- 256 (830)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHH-
Confidence 4555566666543 455555555554443 447889999999887664321 0 1122223333333
Q ss_pred hhCcHHHHHHHHHHHHHcCCC
Q 040367 332 EIHQVERAFKLFDEMQRDGVA 352 (400)
Q Consensus 332 ~~~~~~~a~~~~~~~~~~~~~ 352 (400)
..++...++.+++++...|..
T Consensus 257 ~~~d~~~~l~~~~~l~~~g~~ 277 (830)
T PRK07003 257 AAGDGPEILAVADEMALRSLS 277 (830)
T ss_pred HcCCHHHHHHHHHHHHHhCCC
Confidence 346666666666666665543
No 477
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=44.41 E-value=2.3e+02 Score=25.09 Aligned_cols=132 Identities=14% Similarity=0.153 Sum_probs=75.5
Q ss_pred ChHhHHHHHHHH--HhcCCHHHHHHHHHHHHhCCCCCCHHHHH--------HHHHHHHhCCChHHHHHHHHHHHHc-CC-
Q 040367 179 DVVTYTSVIRGF--CYANDWNEAKCLLIEMMDQGVQPNVVTFN--------VIMDELCKNGKMDEASRLLDLMIQI-GV- 246 (400)
Q Consensus 179 ~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--------~l~~~~~~~~~~~~a~~~~~~~~~~-~~- 246 (400)
...+|--++-.. ...+++.+|.++-+.....-..-+..++. -+-..+-..|+...-...+...... .+
T Consensus 123 Ei~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLr 202 (493)
T KOG2581|consen 123 EIEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLR 202 (493)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhc
Confidence 345555444433 34577888888777765432222333333 2333445566766666666554432 11
Q ss_pred ---CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHH-------HHHHHHHhcCCHHHHHHHHHHHHhC
Q 040367 247 ---RPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYS-------ILINGYCKNKEIEGALSLYGEMLSK 314 (400)
Q Consensus 247 ---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~~~~~~a~~~~~~~~~~ 314 (400)
..-....|.|++.|...+.++.|..+..... .|....-+ .+....+-.+++..|.+.|-.+.+.
T Consensus 203 hd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~----~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rk 276 (493)
T KOG2581|consen 203 HDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSV----YPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRK 276 (493)
T ss_pred CcchhHHHHHHHHHHHHhhhHHHHHHHHHhhccc----CccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHh
Confidence 2224556778888888888888888776654 33322212 2233334567888898888887775
No 478
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=43.81 E-value=3.2e+02 Score=26.71 Aligned_cols=144 Identities=14% Similarity=0.098 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHH--------cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCc---ccchHHHHHHHHHHH
Q 040367 104 MEAAALFTKLRV--------FGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGV---EGFVDKAKELFLQMK 172 (400)
Q Consensus 104 ~~a~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~a~~~~~~~~ 172 (400)
++...+++.... .++..+..+...++... .|+...++.+++.+......... .=..+.+.+.+....
T Consensus 171 edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s--~GD~R~lln~Le~a~~~~~~~~~~~i~It~~~~~e~l~~~~ 248 (725)
T PRK13341 171 EDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVA--NGDARSLLNALELAVESTPPDEDGLIDITLAIAEESIQQRA 248 (725)
T ss_pred HHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccCCCCceeccHHHHHHHHHHhh
Confidence 455555555543 23455667776666643 78999999999886542111000 011233334333311
Q ss_pred ---hCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC-----hHHHHHHHHHHHHc
Q 040367 173 ---DENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGK-----MDEASRLLDLMIQI 244 (400)
Q Consensus 173 ---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~ 244 (400)
+..-.+......+++. ..+.+|++.|+.++.+|.+.|..|....-..++.+...-|. ...+...+......
T Consensus 249 ~~ydk~gd~hyd~Isa~~k-sirgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdigladp~al~~~~~~~~a~~~~ 327 (725)
T PRK13341 249 VLYDKEGDAHFDTISAFIK-SLRGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVGLADPQALVVVEACAAAFERV 327 (725)
T ss_pred hhcccCCCCCHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHh
Confidence 1111223334444444 34568999999999999999877766555555555545553 22344444455555
Q ss_pred CCCCCH
Q 040367 245 GVRPNA 250 (400)
Q Consensus 245 ~~~~~~ 250 (400)
|.+--.
T Consensus 328 g~pE~~ 333 (725)
T PRK13341 328 GLPEGL 333 (725)
T ss_pred CCcchh
Confidence 654333
No 479
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=43.27 E-value=92 Score=20.30 Aligned_cols=42 Identities=21% Similarity=0.309 Sum_probs=24.6
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 040367 341 KLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTLR 382 (400)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 382 (400)
++|+-....|+..|...|..+++...-+=-++...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 555555555666666666666665555555555556666554
No 480
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=42.93 E-value=1.3e+02 Score=22.82 Aligned_cols=61 Identities=5% Similarity=-0.083 Sum_probs=40.5
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHH
Q 040367 43 LNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIM 104 (400)
Q Consensus 43 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 104 (400)
+.+.|++.+..- ..++..+...++.-.|.++++.+.+.+...+..|...-+..+.+.|-+.
T Consensus 17 L~~~GlR~T~qR-~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 17 CAQRNVRLTPQR-LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHcCCCCCHHH-HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 455566655433 3555666666677788888888888776667666666667777776543
No 481
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=42.90 E-value=2.3e+02 Score=24.76 Aligned_cols=30 Identities=17% Similarity=0.119 Sum_probs=19.1
Q ss_pred CChHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040367 178 PDVVTYTSVIRGFCYANDWNEAKCLLIEMM 207 (400)
Q Consensus 178 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 207 (400)
-...++..+...+.+.|+.+.|.+++++.+
T Consensus 38 yHidtLlqls~v~~~~gd~~~A~~lleRAL 67 (360)
T PF04910_consen 38 YHIDTLLQLSEVYRQQGDHAQANDLLERAL 67 (360)
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344555566666777777777766666653
No 482
>PRK09462 fur ferric uptake regulator; Provisional
Probab=42.39 E-value=1.3e+02 Score=21.94 Aligned_cols=45 Identities=20% Similarity=0.265 Sum_probs=25.8
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 040367 93 LIKGLCAE-SRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGH 137 (400)
Q Consensus 93 l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 137 (400)
++..+... +..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 22 Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gl 67 (148)
T PRK09462 22 ILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (148)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCC
Confidence 33444433 3466677777777666645556665555666665554
No 483
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=40.39 E-value=4e+02 Score=26.79 Aligned_cols=51 Identities=16% Similarity=0.088 Sum_probs=25.5
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHc-CCCCCHHhHHHHHHHHHhcC
Q 040367 214 NVVTFNVIMDELCKNGKMDEASRLLDLMIQI-GVRPNAFVYNTLMDGFCLTG 264 (400)
Q Consensus 214 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~ 264 (400)
|..++..-...+...|++..+.+++.++.+. +-.++...+..++..+...|
T Consensus 1230 dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lg 1281 (1304)
T KOG1114|consen 1230 DSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLG 1281 (1304)
T ss_pred CchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhC
Confidence 4444444444555556666666666555542 33444444544444444443
No 484
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=39.95 E-value=1.2e+02 Score=20.78 Aligned_cols=26 Identities=15% Similarity=0.333 Sum_probs=14.5
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHh
Q 040367 55 YNILINCFCKMGRVSHGFVVLGRILR 80 (400)
Q Consensus 55 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 80 (400)
|..++..|...|..++|++++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 45555555555555555555555544
No 485
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=39.68 E-value=1.7e+02 Score=22.18 Aligned_cols=60 Identities=12% Similarity=0.065 Sum_probs=42.2
Q ss_pred HHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 040367 78 ILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHT 138 (400)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 138 (400)
+.+.|+..+..- ..++..+...++.-.|.++++.+.+.+...+..|....+..+.+.|-.
T Consensus 17 L~~~GlR~T~qR-~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 17 CAQRNVRLTPQR-LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHcCCCCCHHH-HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 344565544432 345555556677788999999999888777777877888888888864
No 486
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=38.89 E-value=2e+02 Score=26.30 Aligned_cols=60 Identities=8% Similarity=0.167 Sum_probs=43.4
Q ss_pred CCChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 040367 14 PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 79 (400)
Q Consensus 14 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 79 (400)
|.++..|-.++..+...++|++|+.+.+... ....|..+........+..-++..|..+.
T Consensus 570 pisV~py~~iL~e~~sssKWeqavRLCrfv~------eqTMWAtlAa~Av~~~~m~~~EiAYaA~~ 629 (737)
T KOG1524|consen 570 PISVNPYPEILHEYLSSSKWEQAVRLCRFVQ------EQTMWATLAAVAVRKHQMQISEIAYAAAL 629 (737)
T ss_pred eeeccccHHHHHHHhccchHHHHHHHHHhcc------chHHHHHHHHHHHhhccccHHHHHHHHhh
Confidence 3567778899999999999999999876544 34467777766666666666665555554
No 487
>PRK09462 fur ferric uptake regulator; Provisional
Probab=38.77 E-value=1.6e+02 Score=21.62 Aligned_cols=58 Identities=10% Similarity=0.032 Sum_probs=31.5
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhc-CChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 040367 43 LNSTGLFPDLYTYNILINCFCKM-GRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAES 101 (400)
Q Consensus 43 ~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (400)
+.+.|++.+.. -..++..+... +..-.|.++++.+.+.+...+..|....+..+.+.|
T Consensus 8 l~~~glr~T~q-R~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 8 LKKAGLKVTLP-RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 44556554433 23444444443 456677777777776665555555444455555544
No 488
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=38.59 E-value=1.5e+02 Score=21.47 Aligned_cols=71 Identities=8% Similarity=0.049 Sum_probs=44.5
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCC-CCCChHhHHHHHHHHHhcCCHH
Q 040367 119 EPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDEN-INPDVVTYTSVIRGFCYANDWN 197 (400)
Q Consensus 119 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~ 197 (400)
.++..+-..+..++.+..+.++ ..+.+.+++.+.+.. .........-|.-++.+.++++
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~d--------------------v~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~ 88 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTED--------------------VQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYS 88 (149)
T ss_pred cchHHHHHHHHHHHHcccchHH--------------------HHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHH
Confidence 4566666666677776665332 556666666666522 1122334444556788888888
Q ss_pred HHHHHHHHHHhC
Q 040367 198 EAKCLLIEMMDQ 209 (400)
Q Consensus 198 ~a~~~~~~~~~~ 209 (400)
.+.++.+.+.+.
T Consensus 89 ~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 89 KSLRYVDALLET 100 (149)
T ss_pred HHHHHHHHHHhh
Confidence 888888888775
No 489
>PRK13342 recombination factor protein RarA; Reviewed
Probab=38.19 E-value=2.9e+02 Score=24.64 Aligned_cols=56 Identities=20% Similarity=0.276 Sum_probs=28.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCc-----HHHHHHHHHHHHHcCCCC
Q 040367 298 NKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQ-----VERAFKLFDEMQRDGVAA 353 (400)
Q Consensus 298 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~ 353 (400)
.++.+.|+.++..|.+.|..|....-..+..++-..|. ...|...++.....|++-
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~~g~pe 303 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGMPE 303 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHhCCcH
Confidence 35677777777777777766554433333333333221 223344444444445543
No 490
>PRK09857 putative transposase; Provisional
Probab=38.16 E-value=2.4e+02 Score=23.70 Aligned_cols=65 Identities=12% Similarity=0.019 Sum_probs=35.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCC
Q 040367 289 SILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAAD 354 (400)
Q Consensus 289 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 354 (400)
..++....+.++.++..++++.+.+. .+.......++..-+.+.|.-+++.++..+|...|+.++
T Consensus 210 ~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 210 KGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 34444444555555555555555544 222333444555555566666667777777777766543
No 491
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=38.14 E-value=1.1e+02 Score=19.80 Aligned_cols=50 Identities=14% Similarity=0.171 Sum_probs=33.7
Q ss_pred CchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 040367 318 PDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNS 369 (400)
Q Consensus 318 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 369 (400)
|++.....++..+. .++++++...+.++...|+.+ ......+........
T Consensus 3 p~~~~i~~i~~~~~-~~~~~~~~~~~~~l~~~G~s~-~~Il~~l~~~l~~~~ 52 (89)
T PF08542_consen 3 PPPEVIEEILESCL-NGDFKEARKKLYELLVEGYSA-SDILKQLHEVLVESD 52 (89)
T ss_dssp --HHHHHHHHHHHH-HTCHHHHHHHHHHHHHTT--H-HHHHHHHHHHHHTST
T ss_pred CCHHHHHHHHHHHH-hCCHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHhh
Confidence 34455566666664 469999999999999988764 555677777777663
No 492
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=38.00 E-value=3.9e+02 Score=25.96 Aligned_cols=84 Identities=14% Similarity=0.097 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHH-hcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CC----------CchhhHHHHHHHHH
Q 040367 266 VNRAKELFVSME-SMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKG---IK----------PDVVIYNTLFVVLF 331 (400)
Q Consensus 266 ~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~----------~~~~~~~~l~~~~~ 331 (400)
.++....+..+. ..|+..+......++... .|+...++.+++++...| +. .+......++.++
T Consensus 180 ~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL- 256 (709)
T PRK08691 180 AQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGI- 256 (709)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHH-
Confidence 445455555444 346666666666666543 688999999988877643 11 0111222333333
Q ss_pred hhCcHHHHHHHHHHHHHcCCC
Q 040367 332 EIHQVERAFKLFDEMQRDGVA 352 (400)
Q Consensus 332 ~~~~~~~a~~~~~~~~~~~~~ 352 (400)
..++...++.+++++...|..
T Consensus 257 ~~~d~~~al~~l~~L~~~G~d 277 (709)
T PRK08691 257 INQDGAALLAKAQEMAACAVG 277 (709)
T ss_pred HcCCHHHHHHHHHHHHHhCCC
Confidence 346777777777777776654
No 493
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=37.74 E-value=1.3e+02 Score=20.50 Aligned_cols=22 Identities=18% Similarity=0.386 Sum_probs=12.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 040367 255 TLMDGFCLTGRVNRAKELFVSM 276 (400)
Q Consensus 255 ~l~~~~~~~~~~~~a~~~~~~~ 276 (400)
.++.-|...++.++|...+.++
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHh
Confidence 3444555666767666666664
No 494
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=37.70 E-value=72 Score=26.77 Aligned_cols=65 Identities=9% Similarity=0.057 Sum_probs=27.5
Q ss_pred ChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCChhhHHHHHHHHHhc
Q 040367 16 PVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNI-LINCFCKMGRVSHGFVVLGRILRS 81 (400)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~ 81 (400)
|+..|...+....+.|.+.+.-.+|.++.+.. |.|+..|.. --.-+...++++.+..++...++.
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~kh-P~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~ 171 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKH-PLNVDLWIYCCAFELFEIANIESSRAMFLKGLRM 171 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCceeeeeeccchhhhhccHHHHHHHHHhhhcc
Confidence 44444444444444444444444554444442 333333322 112223344444444444444443
No 495
>PRK12798 chemotaxis protein; Reviewed
Probab=37.56 E-value=3e+02 Score=24.51 Aligned_cols=82 Identities=13% Similarity=0.090 Sum_probs=40.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hCCChHHHHHHHHHHHHcCCCCC----HHhHHHHHHHHHhcCCHH
Q 040367 193 ANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELC-KNGKMDEASRLLDLMIQIGVRPN----AFVYNTLMDGFCLTGRVN 267 (400)
Q Consensus 193 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~ 267 (400)
.|+-.++.+.+..+.....++....+-.|+.+-. ...+...|+..|+...-. -|. ......-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 4566666666655554444455555555544332 334556666666655432 222 122333333445556665
Q ss_pred HHHHHHHHH
Q 040367 268 RAKELFVSM 276 (400)
Q Consensus 268 ~a~~~~~~~ 276 (400)
++..+-.+.
T Consensus 203 rf~~la~~Y 211 (421)
T PRK12798 203 KFEALARNY 211 (421)
T ss_pred HHHHHHHHH
Confidence 555444443
No 496
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=37.20 E-value=2e+02 Score=22.47 Aligned_cols=30 Identities=23% Similarity=0.159 Sum_probs=22.2
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 040367 251 FVYNTLMDGFCLTGRVNRAKELFVSMESMG 280 (400)
Q Consensus 251 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 280 (400)
...+.++..+...|+++.|.++|.-+.+..
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~ 71 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCP 71 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCC
Confidence 445667777778888888888888877654
No 497
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=37.02 E-value=1.5e+02 Score=20.93 Aligned_cols=68 Identities=15% Similarity=0.049 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCCChHhHHHHH----HHHHhcCCHH
Q 040367 122 VFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENINPDVVTYTSVI----RGFCYANDWN 197 (400)
Q Consensus 122 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~ 197 (400)
...+..|-.++...|++++++.- .+.|+.+|.+--+.. +.....|...+ .++-..|+.+
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~s----------------A~~aL~YFNRRGEL~-qdeGklWIaaVfsra~Al~~~Gr~~ 117 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQS----------------ADRALRYFNRRGELH-QDEGKLWIAAVFSRAVALEGLGRKE 117 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHH----------------HHHHHHHHHHH--TT-STHHHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHHHhhccHHHHHHH----------------HHHHHHHHhhccccc-cccchhHHHHHHHHHHHHHhcCChH
Confidence 45567788889999999888765 456666776654432 22233333322 2445567888
Q ss_pred HHHHHHHHH
Q 040367 198 EAKCLLIEM 206 (400)
Q Consensus 198 ~a~~~~~~~ 206 (400)
+|+..|+..
T Consensus 118 eA~~~fr~a 126 (144)
T PF12968_consen 118 EALKEFRMA 126 (144)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887777653
No 498
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=37.00 E-value=1.1e+02 Score=19.52 Aligned_cols=24 Identities=17% Similarity=0.324 Sum_probs=11.2
Q ss_pred HHHHhccCChhHHHHHHHHHHhCC
Q 040367 24 FGCLAKNKHYDTVLSLFKRLNSTG 47 (400)
Q Consensus 24 ~~~~~~~~~~~~a~~~~~~~~~~~ 47 (400)
++.+.++.--++|+++++.+.++|
T Consensus 38 ~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 38 IDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhC
Confidence 334444444444555554444444
No 499
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=36.87 E-value=3e+02 Score=24.38 Aligned_cols=147 Identities=17% Similarity=0.141 Sum_probs=85.6
Q ss_pred ChhhHHHHHHHH--hccCChhHHHHHHHHHHhCCCCCCHHHHHHHH--------HHHHhcCChhhHHHHHHHHHhc-CCC
Q 040367 16 PVCSFNILFGCL--AKNKHYDTVLSLFKRLNSTGLFPDLYTYNILI--------NCFCKMGRVSHGFVVLGRILRS-CFT 84 (400)
Q Consensus 16 ~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--------~~~~~~~~~~~a~~~~~~~~~~-~~~ 84 (400)
.+..|-.++..+ ..++++.+|..+-+.....-...+..++..+. .++-..|+...-..++...... ...
T Consensus 123 Ei~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLr 202 (493)
T KOG2581|consen 123 EIEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLR 202 (493)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhc
Confidence 456666665544 44578888888777654332222444433222 3344556666665555554432 112
Q ss_pred ----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH-------HHHHHHHhcCChHHHHHHHHHHHcCCC
Q 040367 85 ----PNAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYN-------TLINGLYRTGHTIVALNLFEEMASGNG 153 (400)
Q Consensus 85 ----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~~~~~~a~~~~~~~~~~~~ 153 (400)
--....|.|++.|...+.++.|..+..+.. -|....-+ .+....+-.+++..|.+.|-......+
T Consensus 203 hd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~----~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkap 278 (493)
T KOG2581|consen 203 HDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSV----YPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAP 278 (493)
T ss_pred CcchhHHHHHHHHHHHHhhhHHHHHHHHHhhccc----CccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCc
Confidence 223456778888999999999998877655 33322222 233344456788888888888877766
Q ss_pred CCCcccchHHHHH
Q 040367 154 EFGVEGFVDKAKE 166 (400)
Q Consensus 154 ~~~~~~~~~~a~~ 166 (400)
....-|..+.+.+
T Consensus 279 q~~alGf~q~v~k 291 (493)
T KOG2581|consen 279 QHAALGFRQQVNK 291 (493)
T ss_pred chhhhhHHHHHHH
Confidence 6555554444443
No 500
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=36.63 E-value=1.6e+02 Score=21.17 Aligned_cols=20 Identities=15% Similarity=0.406 Sum_probs=10.5
Q ss_pred HhhCcHHHHHHHHHHHHHcC
Q 040367 331 FEIHQVERAFKLFDEMQRDG 350 (400)
Q Consensus 331 ~~~~~~~~a~~~~~~~~~~~ 350 (400)
...|+++.|+++.+.+++.|
T Consensus 59 ~D~Gd~~~AL~~a~yAi~~~ 78 (132)
T PF05944_consen 59 FDVGDFDGALDIAEYAIEHG 78 (132)
T ss_pred hcccCHHHHHHHHHHHHHcC
Confidence 34555555555555555544
Done!